Citrus Sinensis ID: 005970
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ11 | 759 | Probable glycerophosphory | yes | no | 0.913 | 0.802 | 0.588 | 0.0 | |
| Q9FJ62 | 766 | Probable glycerophosphory | no | no | 0.928 | 0.808 | 0.574 | 0.0 | |
| Q7Y208 | 763 | Probable glycerophosphory | no | no | 0.913 | 0.798 | 0.561 | 0.0 | |
| P96236 | 274 | Probable glycerophosphory | yes | no | 0.095 | 0.233 | 0.409 | 0.0003 |
| >sp|Q9SZ11|GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/620 (58%), Positives = 472/620 (76%), Gaps = 11/620 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVL-TMSLY--LKRGTSSQT 645
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ +S++ + ++QT
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 646 QLWRSTHITRELVLMELLQN 665
+ ++ V +EL QN
Sbjct: 601 NVVEKLQKSQLPVYVELFQN 620
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6 |
| >sp|Q9FJ62|GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/630 (57%), Positives = 461/630 (73%), Gaps = 11/630 (1%)
Query: 48 MCNTR---ALGLLLVSALVVLHCGVIAQVSAQ--GSNATSRWQTLTGDPPFVVARGGFSG 102
M N R + +L S + L +I +S Q + S WQTLTGD P V+ARGGFSG
Sbjct: 1 MINMRDNPTMHVLQASKFLFLALILIQLLSTQLFAQRSKSPWQTLTGDAPLVIARGGFSG 60
Query: 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162
+ PDSS AYS TS P +LWCDVQLTKD G+CFPD+K+ NASNI ++ ++ +Y
Sbjct: 61 LLPDSSLDAYSFVSQTSVPGAVLWCDVQLTKDAIGLCFPDVKMMNASNIQDVYPKRKTSY 120
Query: 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWL 222
L+NGVPT WF+ID+ DL+ +IL QG+ SR+ FDGN + I TV+D++ Q+KP G WL
Sbjct: 121 LLNGVPTQDWFTIDFNFKDLTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWL 180
Query: 223 NIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
N+QHDAFYAQHNLSM SF+LS+S++V+++Y+SSPEVNF R+I RF + K VFRFL K
Sbjct: 181 NVQHDAFYAQHNLSMSSFLLSISKTVIIDYLSSPEVNFFRNIGRRFGRNGPKFVFRFLEK 240
Query: 283 SEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLE 342
++E +TNQTYGSL NLTF+KTFASG+LVPK YIWP+ ES YLLP T+ V DAHK LE
Sbjct: 241 DDVEVSTNQTYGSLAGNLTFLKTFASGVLVPKSYIWPI-ESQYLLPRTSFVQDAHKAGLE 299
Query: 343 VFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNA 402
V+AS F ND +++NYS+DPL EYLSF+DNGDFSVDG+LSDFPLT S+AVDCF+HLG NA
Sbjct: 300 VYASGFGNDFDLAYNYSFDPLAEYLSFMDNGDFSVDGLLSDFPLTASSAVDCFSHLGSNA 359
Query: 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS 462
S + LVISKNGASGDYP CT+LAY KAI DG D IDC +QMS DG+PFCLS INL S
Sbjct: 360 SSQVDFLVISKNGASGDYPGCTDLAYTKAIKDGADVIDCSLQMSSDGIPFCLSSINLGES 419
Query: 463 TNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFK-FKLFRNPKNKNA 521
TN QS F + +TT+PEI + GI+SFSL W EIQTL P I NPY + F +FRNP+ +++
Sbjct: 420 TNVVQSPFRNRSTTVPEIGSLPGIYSFSLAWSEIQTLRPAIENPYSREFTMFRNPRERSS 479
Query: 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY-NKQTAL 580
GKF+ LSDFL +AKN++SL+GVLIS+ENA YL EKQG+ +V++ L AGY NK T
Sbjct: 480 GKFVSLSDFLNLAKNSSSLTGVLISVENATYLREKQGLDAVKAVLDTLTEAGYSNKTTTT 539
Query: 581 KVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRG 640
+VMIQST+SSVL+ ++++ YE VYKV+E IRD L+ IEDIKKFAD+VV++
Sbjct: 540 RVMIQSTNSSVLIDFKKQSRYETVYKVEETIRDILDTAIEDIKKFADAVVISKKSVFPTS 599
Query: 641 ---TSSQTQLWRSTHITRELVLMELLQNSL 667
T+ QT+L + V +E+ +N
Sbjct: 600 ESFTTGQTKLVERLQKFQLPVYVEVFRNEF 629
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
| >sp|Q7Y208|GLPQ3_ARATH Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/621 (56%), Positives = 456/621 (73%), Gaps = 12/621 (1%)
Query: 57 LLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSI 110
L++ + +L CGV+ AQ+ AQ S TSRWQTL GD P V+ARGGFSG++PDSS
Sbjct: 11 LVIRSSTLLFCGVVLIHLFAAQIDAQRS--TSRWQTLNGDAPLVIARGGFSGLYPDSSIA 68
Query: 111 AYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170
AY L +TS V+LWCD+QLTKD GICFPDL L NAS I +++ ++K+Y VNGV T
Sbjct: 69 AYQLATLTSVADVVLWCDLQLTKDGLGICFPDLNLANASTIDRVYPNREKSYSVNGVTTK 128
Query: 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFY 230
GWF D++L +L N +L +G+ SRTD+FDGNG+ I T++D+ + G WLN+QHDAFY
Sbjct: 129 GWFPNDFSLTELQNFLLIRGILSRTDRFDGNGYLISTIEDVVTTLNREGFWLNVQHDAFY 188
Query: 231 AQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTN 290
Q NLSM SF+LSVSR+V +++ISSPEVNF + I F + VF+FLGK + EPTTN
Sbjct: 189 EQQNLSMSSFLLSVSRTVSIDFISSPEVNFFKKITGSFGRNGPTFVFQFLGKEDFEPTTN 248
Query: 291 QTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAN 350
+TYGS+L NLTF+KTFASGILVPK YI P+D+ YL+PHT++V DAHK L+V+ S FAN
Sbjct: 249 RTYGSILSNLTFVKTFASGILVPKSYILPLDDEQYLVPHTSLVQDAHKAGLQVYVSGFAN 308
Query: 351 DIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLV 410
D+ I++NYS DP++EYLSF+DNGDFSVDGVLSDFP+T SAAVDCF+H+G+NA+K + LV
Sbjct: 309 DVDIAYNYSSDPVSEYLSFVDNGDFSVDGVLSDFPITASAAVDCFSHIGRNATKQVDFLV 368
Query: 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKF 470
ISK+GASGDYP CT+LAY+KAI DG D IDC VQMS DGVPFCL I+L NS A Q+ F
Sbjct: 369 ISKDGASGDYPGCTDLAYEKAIKDGADVIDCSVQMSSDGVPFCLRSIDLRNSIAALQNTF 428
Query: 471 NSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDF 530
++ +T++PEI + GIF+FSL W EIQ+L P ISNP+ +++FRNP+ KN+GK + LS F
Sbjct: 429 SNRSTSVPEISSVPGIFTFSLTWPEIQSLTPAISNPFRVYRIFRNPREKNSGKLISLSQF 488
Query: 531 LEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY-NKQTALKVMIQSTDS 589
L++AK SLSGVLIS+ENA YL EKQG+ V +V++ L AGY N T KVMIQST+S
Sbjct: 489 LDLAKTYTSLSGVLISVENAAYLREKQGLDVVQAVLDTLTEAGYSNGTTTTKVMIQSTNS 548
Query: 590 SVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTS---SQTQ 646
SVL+ ++++ YE VYK++E I + + IEDIKKFA++VV+ S QT
Sbjct: 549 SVLVDFKKQSKYETVYKIEETIGNIRDSAIEDIKKFANAVVINKDSVFPNSDSFLTGQTN 608
Query: 647 LWRSTHITRELVLMELLQNSL 667
+ ++ V +EL +N
Sbjct: 609 VVERLQKSQLPVYVELFRNEF 629
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
| >sp|P96236|GLPQ1_MYCTU Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis GN=glpQ1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
PFVVA G S P+ + AY L L A V CDV+LT+D +C D +LD S
Sbjct: 12 PFVVAHRGASAARPEHTLAAYDLALKEGADGVE--CDVRLTRDGHLVCVHDRRLDRTSTG 69
Query: 152 AQIFKT 157
A + T
Sbjct: 70 AGLVST 75
|
Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols. Mycobacterium tuberculosis (taxid: 1773) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| 255576268 | 768 | glycerophosphoryl diester phosphodiester | 0.854 | 0.742 | 0.679 | 0.0 | |
| 225460805 | 757 | PREDICTED: probable glycerophosphoryl di | 0.851 | 0.750 | 0.665 | 0.0 | |
| 147811111 | 642 | hypothetical protein VITISV_027762 [Viti | 0.842 | 0.875 | 0.667 | 0.0 | |
| 356552745 | 754 | PREDICTED: probable glycerophosphoryl di | 0.824 | 0.729 | 0.673 | 0.0 | |
| 83281191 | 752 | putative glycerophosphoryl diester phosp | 0.917 | 0.813 | 0.613 | 0.0 | |
| 356501592 | 753 | PREDICTED: probable glycerophosphoryl di | 0.832 | 0.737 | 0.662 | 0.0 | |
| 356524319 | 761 | PREDICTED: probable glycerophosphoryl di | 0.856 | 0.750 | 0.649 | 0.0 | |
| 18416801 | 759 | putative glycerophosphoryl diester phosp | 0.913 | 0.802 | 0.588 | 0.0 | |
| 4455192 | 770 | putative protein [Arabidopsis thaliana] | 0.920 | 0.797 | 0.585 | 0.0 | |
| 15810483 | 759 | unknown protein [Arabidopsis thaliana] | 0.913 | 0.802 | 0.588 | 0.0 |
| >gi|255576268|ref|XP_002529027.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] gi|223531507|gb|EEF33338.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/574 (67%), Positives = 481/574 (83%), Gaps = 4/574 (0%)
Query: 58 LVSALVVLHCGVIAQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLI 117
+V+A V+L+ + + VSAQGS + W+TL+G+PP V+ARGGFSGIFPDSSS AY L LI
Sbjct: 20 VVAAFVLLNS-LASLVSAQGSGTS--WKTLSGNPPLVIARGGFSGIFPDSSSAAYQLALI 76
Query: 118 TSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDY 177
T P +ILWCDVQLTKD GIC PDL+LDN+++I+ +FK + KNYLVNG PT GWFS+D+
Sbjct: 77 TGVPDLILWCDVQLTKDGVGICAPDLRLDNSTDISLVFKNKDKNYLVNGAPTQGWFSVDF 136
Query: 178 TLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSM 237
T NDLS+++L QGVYSR++KFDGN F I TV+++ +KPP +WLNIQHDAF+ QHNLSM
Sbjct: 137 TFNDLSSVVLTQGVYSRSNKFDGNLFPIQTVENVT-GLKPPSIWLNIQHDAFFTQHNLSM 195
Query: 238 RSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL 297
RS+VLS+S+ VV+NYISSPE+ FLR IA+RF P +TKLVFRFLG +EIEP+TNQTY +L
Sbjct: 196 RSYVLSLSKKVVINYISSPEMAFLRGIASRFNPKVTKLVFRFLGPNEIEPSTNQTYSALS 255
Query: 298 KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFN 357
KNLTFIKTFASGIL+PK YIWPVD SLYL PHT++V DAHK LEVFAS F ND+P SFN
Sbjct: 256 KNLTFIKTFASGILIPKGYIWPVDASLYLQPHTSVVSDAHKAGLEVFASEFYNDVPFSFN 315
Query: 358 YSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGAS 417
YSYDP++EYLSF+DNGDFS+DGVLSDFP+TPS A DCF+ +G+NA+K +N+LVISKNGAS
Sbjct: 316 YSYDPISEYLSFVDNGDFSIDGVLSDFPITPSGAFDCFSQIGQNATKQSNVLVISKNGAS 375
Query: 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI 477
GDYP CT++AYQKAISDG D IDCPVQMSKDG+PFCLS INLI+ST AQ+ + S+ I
Sbjct: 376 GDYPGCTDMAYQKAISDGADVIDCPVQMSKDGIPFCLSTINLIDSTKVAQTNYGSLAANI 435
Query: 478 PEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA 537
PE+ GSGI++F+L W +IQTL P I+NPY +KLFRNPK +NAGKF+ LSDFL +AKN
Sbjct: 436 PELEKGSGIYTFNLTWSQIQTLTPAIANPYAIYKLFRNPKFRNAGKFLTLSDFLALAKNT 495
Query: 538 NSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE 597
+SLSGVLISIE+A YL EKQ + VT++V+ AL AGY QTA+ VMIQST+S+VLMK ++
Sbjct: 496 SSLSGVLISIEHAAYLIEKQQLPVTDAVLGALSKAGYENQTAIDVMIQSTNSAVLMKFKD 555
Query: 598 KTSYELVYKVKENIRDALNQTIEDIKKFADSVVL 631
K +Y+LVYKV ENIRDAL+ TIEDI+ FA+SVV+
Sbjct: 556 KKNYKLVYKVDENIRDALDATIEDIRTFANSVVV 589
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460805|ref|XP_002276757.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 1 [Vitis vinifera] gi|297737518|emb|CBI26719.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/574 (66%), Positives = 465/574 (81%), Gaps = 6/574 (1%)
Query: 62 LVVLHCGVIAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSA 120
L +LH +A VSAQGS N TS WQTL G+ P V+ARGGFSG+FPDSSS AYSL L+TS
Sbjct: 10 LFLLHS--VALVSAQGSTNGTSSWQTLNGNAPLVIARGGFSGLFPDSSSAAYSLALMTSL 67
Query: 121 PSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLN 180
+V+LWCDVQLTKD AGICFPD+KL+NAS+I+ +FK + YLVNGV TPGWFS+D+TL
Sbjct: 68 SNVVLWCDVQLTKDGAGICFPDMKLENASDISIVFKNRNNVYLVNGVSTPGWFSVDFTLT 127
Query: 181 DLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSF 240
DL + LNQGVYSR+ +FDGN F ILTVQ+M + I+PPGLWLN+QHD FY +HNLSMR+F
Sbjct: 128 DLETVALNQGVYSRSGRFDGNLFPILTVQEMVKLIRPPGLWLNLQHDVFYTKHNLSMRNF 187
Query: 241 VLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300
VLSVS+SV+V+YISSPEV FLR ++ RF+ + TKL+FRFL K E +P+TNQTYGSLL NL
Sbjct: 188 VLSVSKSVIVDYISSPEVAFLRGVSQRFKATKTKLIFRFLEKEETDPSTNQTYGSLLNNL 247
Query: 301 TFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSY 360
TFIKTFASGILVPK YIWPV+++ YL T +V +AHKE LEVF S+F NDIP S+NYSY
Sbjct: 248 TFIKTFASGILVPKGYIWPVNKNSYLESSTLVVQNAHKEGLEVFGSDFINDIPFSYNYSY 307
Query: 361 DPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420
DP+ E L+FIDN FSVDGVLSDFP+TPSAA+DCFAH+GKNAS L+IS NGASGDY
Sbjct: 308 DPIAEVLNFIDNDAFSVDGVLSDFPITPSAAIDCFAHIGKNASGQEKPLIISYNGASGDY 367
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
PSCT+LAY KAISDGVD +DC VQM+KDG P CLS INL++ST AQ+ F++ TTTI E+
Sbjct: 368 PSCTDLAYTKAISDGVDVLDCNVQMTKDGTPICLSSINLMDSTKVAQTPFSTFTTTITEL 427
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSL 540
GSGIF+F+L W++I++L P ISNPY F+L RNP K AGK + LSDFL +AK ANSL
Sbjct: 428 QKGSGIFTFNLTWEDIRSLTPAISNPYSTFRLSRNPAAKTAGKLVSLSDFLSIAKEANSL 487
Query: 541 S-GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K 598
S GVLI IE+A +L K G+SVT++V++AL AGY+ T +VMIQST+SSVL + +E K
Sbjct: 488 SGGVLIGIEHAAFLV-KVGLSVTDAVLDALSKAGYDNVTTPRVMIQSTNSSVLKEFKEKK 546
Query: 599 TSYELVYKVKENIRDALNQTIEDIKKFADSVVLT 632
+YELVY+V ENIRDA + TIEDIKKFA SVV++
Sbjct: 547 KNYELVYRVDENIRDASDATIEDIKKFATSVVIS 580
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147811111|emb|CAN61355.1| hypothetical protein VITISV_027762 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/566 (66%), Positives = 460/566 (81%), Gaps = 4/566 (0%)
Query: 70 IAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCD 128
+A VSAQGS N TS WQTL G+ P V+ARGGFSG+FPDSSS AYSL L+TS +V+LWCD
Sbjct: 16 VALVSAQGSTNGTSSWQTLNGNAPLVIARGGFSGLFPDSSSAAYSLALMTSLSNVVLWCD 75
Query: 129 VQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILN 188
VQL+KD AGICFPD+KL+NAS+I+ +FK + YLVNGV TPGWFS+D+TL DL + LN
Sbjct: 76 VQLSKDGAGICFPDMKLENASDISIVFKNRNNVYLVNGVSTPGWFSVDFTLTDLETVALN 135
Query: 189 QGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248
QGVYSR+ KFDGN F ILTVQ+M + +PPGLWLN+QHD FY +HNLSMR+FVLSVS+SV
Sbjct: 136 QGVYSRSGKFDGNLFPILTVQEMVKLTRPPGLWLNLQHDVFYTKHNLSMRNFVLSVSKSV 195
Query: 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFAS 308
+V+YISSPEV FLR ++ RF+ + TKL+FRFL K E +P+TNQTYGSLL NLTFIKTFAS
Sbjct: 196 IVDYISSPEVAFLRGVSQRFKATKTKLIFRFLEKEETDPSTNQTYGSLLNNLTFIKTFAS 255
Query: 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS 368
GILVPK YIWPV+++ YL T +V +AHKE LEVF S+F NDIP S+NYSYDP+ E L+
Sbjct: 256 GILVPKGYIWPVNKNSYLESSTLVVQNAHKEGLEVFGSDFINDIPFSYNYSYDPIAEVLN 315
Query: 369 FIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAY 428
FIDN FSVDGVLSDFP+TPSAA+DCFAH+GKNAS L+IS NGASGDYPSCT+LAY
Sbjct: 316 FIDNDAFSVDGVLSDFPITPSAAIDCFAHIGKNASGQEKPLIISYNGASGDYPSCTDLAY 375
Query: 429 QKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488
KAISDGVD +DC VQM+KDG P CLS INL++ST AQ+ F++ TTTI E+ GSGIF+
Sbjct: 376 TKAISDGVDVLDCNVQMTKDGTPICLSSINLMDSTKVAQTPFSTFTTTITELQKGSGIFT 435
Query: 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLS-GVLISI 547
F+L W++I++L P ISNPY F+L RNP K AGK + LSDFL +AK ANSLS GVLI I
Sbjct: 436 FNLTWEDIRSLTPAISNPYSTFRLSRNPAAKTAGKLVSLSDFLSIAKEANSLSGGVLIGI 495
Query: 548 ENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-KTSYELVYK 606
E+A +L K G+SVT++V++AL AGY+ T +VMIQST+SSVL + +E K +YELVY+
Sbjct: 496 EHAAFLV-KVGLSVTDAVLDALSKAGYDNVTTPRVMIQSTNSSVLKEFKEKKKNYELVYR 554
Query: 607 VKENIRDALNQTIEDIKKFADSVVLT 632
V ENIRDA + TIEDIKKFA SVV++
Sbjct: 555 VDENIRDASDATIEDIKKFATSVVIS 580
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552745|ref|XP_003544723.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/551 (67%), Positives = 441/551 (80%), Gaps = 1/551 (0%)
Query: 82 SRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFP 141
S W TL G P VVARGGFSGI PDSS AY+L +I++ P V +WCDVQLTKD GIC P
Sbjct: 28 STWNTLGGGAPLVVARGGFSGILPDSSGAAYNLAVISTGPDVYIWCDVQLTKDGVGICQP 87
Query: 142 DLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGN 201
D+ L N++ IA I+ + +Y VNGVPT G+F +DYTL DLS++IL QGVYSR+ FDGN
Sbjct: 88 DINLANSTYIATIYPNKTTSYSVNGVPTSGYFPLDYTLKDLSSVILTQGVYSRSTLFDGN 147
Query: 202 GFQILTVQDMAR-QIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNF 260
GF ILTV D+ + KP G+WLNIQHDAFYAQHNLSMRSFVLSVSRSVV +YISSPEV F
Sbjct: 148 GFGILTVDDLVKLDQKPKGIWLNIQHDAFYAQHNLSMRSFVLSVSRSVVFSYISSPEVGF 207
Query: 261 LRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320
LRSIA+RF P TKLVFRF+ +S+++P+TNQTYGSLLKNLTFIKTFASGILVPK YIWPV
Sbjct: 208 LRSIASRFNPKTTKLVFRFMRQSDVDPSTNQTYGSLLKNLTFIKTFASGILVPKGYIWPV 267
Query: 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV 380
D +LYL HT++V DAHK LEVFAS+F ND+P SFNYSYDPL EYL F+DNGDFSVDGV
Sbjct: 268 DATLYLQSHTSLVSDAHKAGLEVFASDFVNDVPSSFNYSYDPLAEYLQFVDNGDFSVDGV 327
Query: 381 LSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440
LSDFP+TP A+ CFAHLG NA+K LVISK GASGDYP+CT+LAY KAISDGVD +D
Sbjct: 328 LSDFPITPFEAIGCFAHLGTNATKKDKTLVISKYGASGDYPACTDLAYNKAISDGVDVLD 387
Query: 441 CPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLI 500
CPVQMSKDG PFCL+ I+LI ST AQS F+ TIPEI +GSGIF+F+L W++I+ L
Sbjct: 388 CPVQMSKDGTPFCLNSIDLIESTTVAQSSFSKFAMTIPEIKSGSGIFAFNLTWNDIKILT 447
Query: 501 PQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMS 560
P I NP+ K++LFRNP++KNAG + LSDFL + KN SLSGV I +ENA YLA+KQG+S
Sbjct: 448 PSILNPFAKYRLFRNPRSKNAGTLLALSDFLSLTKNQTSLSGVAIIVENAAYLADKQGLS 507
Query: 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIE 620
V ++V+ AL AGY+K + KV IQST+SSVL+K +EKTSYELVYK+ E + DA N +E
Sbjct: 508 VIDAVIGALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTSYELVYKIDETVGDAANAAVE 567
Query: 621 DIKKFADSVVL 631
DIK FA SVV+
Sbjct: 568 DIKSFASSVVV 578
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83281191|dbj|BAE53680.1| putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] gi|115500890|dbj|BAF34116.1| glycerophosphodiesterase-like protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/624 (61%), Positives = 472/624 (75%), Gaps = 12/624 (1%)
Query: 48 MCNTRALGLLLVSALVVLHCGVIAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPD 106
M N R++ LL L C A VSAQ S NATS+W TLTGD P V+ARGGFSG+ PD
Sbjct: 1 MWNLRSISCLL------LLCCSAAFVSAQRSDNATSKWLTLTGDAPKVIARGGFSGLMPD 54
Query: 107 SSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNG 166
SS AY L S + WCDVQLTKD GIC D++LDN+S++ +FK +Q YLVNG
Sbjct: 55 SSFNAYILAKAISVADWVAWCDVQLTKDGVGICLSDIRLDNSSDVNVLFKNKQNTYLVNG 114
Query: 167 VPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQH 226
VP GWFS+D+ DL+ + L QGV+SR+ +FDG QILTVQD+A Q+KPPGLWLNIQH
Sbjct: 115 VPQKGWFSVDFNFKDLALVSLKQGVFSRSPRFDGTPQQILTVQDVASQVKPPGLWLNIQH 174
Query: 227 DAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIE 286
D+FY+Q NLS+RSFV+S+SRSV+VNYISSPEVNFLRSIA RF P +TK VFRFLG+ IE
Sbjct: 175 DSFYSQRNLSIRSFVVSLSRSVIVNYISSPEVNFLRSIARRFNPRVTKFVFRFLGEDGIE 234
Query: 287 PTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFAS 346
P+TNQTYGSLLKNLTF+KTFASGILVPK YIWPVD SLYL PHT++VLDAHKE LE+FA+
Sbjct: 235 PSTNQTYGSLLKNLTFVKTFASGILVPKHYIWPVDNSLYLQPHTSVVLDAHKEGLEIFAA 294
Query: 347 NFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSA 406
+FAND+P ++NYSYDP+ EYLS+IDNGDFSVDGVLSDFPLTPS++VDCF+HLGKN
Sbjct: 295 DFANDVPSAYNYSYDPVAEYLSYIDNGDFSVDGVLSDFPLTPSSSVDCFSHLGKNDKPQV 354
Query: 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAA 466
L +I+ GASGDYP CT+LAY KA SDG D + CPVQM+KD VPFCL INLI+ T AA
Sbjct: 355 KLQIITSEGASGDYPGCTDLAYTKAASDGADVLGCPVQMTKDRVPFCLGSINLIDKTTAA 414
Query: 467 QSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMK 526
QS F++I TT+PE+ +GI + +L W EIQ+L P ISN + +F+LFRNPK +N G FM
Sbjct: 415 QSPFSNIATTVPELKITNGILTINLTWTEIQSLKPAISNRWSEFRLFRNPKARNDGNFMS 474
Query: 527 LSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQS 586
L+DFL AKNA S+SGV+IS+ENA Y+A KQG+ VT +V++AL AGYN QTA KV+IQS
Sbjct: 475 LADFLTFAKNATSVSGVMISVENAAYMA-KQGLGVTGAVLDALSKAGYNNQTAKKVLIQS 533
Query: 587 TDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTS---S 643
TDSSVL + + K+SYELVY V ++IRD + TI +IK FA SV++T + +
Sbjct: 534 TDSSVLEEFK-KSSYELVYGVGDDIRDIESSTILEIKTFAKSVIITKQSVFPSEDAFIIA 592
Query: 644 QTQLWRSTHITRELVLMELLQNSL 667
QT + + + V ++LL N
Sbjct: 593 QTNVVQKLQSSNLTVYVQLLNNEF 616
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501592|ref|XP_003519608.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/560 (66%), Positives = 447/560 (79%), Gaps = 5/560 (0%)
Query: 73 VSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLT 132
+SAQ S W TL+G P VVARGGFSG+ PDSS +Y+L +ITS P V +WCDVQLT
Sbjct: 23 ISAQ----RSTWNTLSGGAPLVVARGGFSGMLPDSSDASYNLAVITSGPDVYIWCDVQLT 78
Query: 133 KDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVY 192
KD GIC PD+ L N++ IA + + +YLVNGVPT G+F +DYTL DLS+++L QGVY
Sbjct: 79 KDGLGICQPDINLANSTYIASAYPNKTTSYLVNGVPTRGYFPLDYTLKDLSSVVLTQGVY 138
Query: 193 SRTDKFDGNGFQILTVQDMAR-QIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251
SR++ FDGN F ILTV+D+A+ + KP G WLNIQHDAFYAQHNLSMRSFVLSVSR VV +
Sbjct: 139 SRSNLFDGNNFGILTVEDLAKLRQKPKGKWLNIQHDAFYAQHNLSMRSFVLSVSRKVVFS 198
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGIL 311
YISSPEV FLRSIA+RF P TKLVFRF+G S+++P+TN+TYGSLL+NLTFIKTFASGIL
Sbjct: 199 YISSPEVGFLRSIASRFNPKTTKLVFRFMGLSDVDPSTNRTYGSLLQNLTFIKTFASGIL 258
Query: 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID 371
VPK YIWPVD +LYL HT++V DAHK LEVFAS+F ND+P SFNYSYDPL EYL F+D
Sbjct: 259 VPKGYIWPVDATLYLQSHTSLVSDAHKAGLEVFASDFVNDVPFSFNYSYDPLAEYLQFVD 318
Query: 372 NGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKA 431
NGDFSVDGVLSDFP+TP A+ CFAHLG NA+K LVISK GASGDYP+CT+LAY KA
Sbjct: 319 NGDFSVDGVLSDFPITPFEAIGCFAHLGTNATKKDKTLVISKYGASGDYPACTDLAYNKA 378
Query: 432 ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSL 491
ISDGVD +DCPVQMSKDG PFCL+ I+LI ST AQS F+ TIPEI +G GIF+F+L
Sbjct: 379 ISDGVDVLDCPVQMSKDGTPFCLNSIDLIESTTVAQSSFSKFAMTIPEIKSGIGIFAFNL 438
Query: 492 IWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551
W++I++L P I NP+ K++LFRNP++KNAG + LSDFL + KN SLSGV I +ENA
Sbjct: 439 TWNDIKSLTPSILNPFAKYRLFRNPRSKNAGTLLALSDFLSLTKNQTSLSGVAIIVENAA 498
Query: 552 YLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENI 611
YLA+KQG+SV ++V+ AL AGY+K + KV IQST+SSVL+K +EKTSYELVYK+ E I
Sbjct: 499 YLADKQGLSVIDAVIGALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTSYELVYKIDETI 558
Query: 612 RDALNQTIEDIKKFADSVVL 631
DA N +EDIK FA SVV+
Sbjct: 559 GDAANAAVEDIKSFASSVVV 578
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524319|ref|XP_003530777.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/574 (64%), Positives = 452/574 (78%), Gaps = 3/574 (0%)
Query: 60 SALVVLHCGVIAQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITS 119
S L +L V+ VSAQGSN T+ W TLTG PP V+ARGGFSGIFPDSS AY+L +TS
Sbjct: 12 SLLHLLFHSVLVLVSAQGSNRTT-WNTLTGSPPLVIARGGFSGIFPDSSEFAYNLAAVTS 70
Query: 120 APSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTL 179
++I+WCDVQLTKD GIC P++KL+NA+NI +F+ + K Y VNGV T +F++D+T
Sbjct: 71 LKNLIVWCDVQLTKDGEGICIPNIKLENATNIDNVFQNRSKTYSVNGVQTSAYFAVDFTF 130
Query: 180 NDL-SNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMR 238
+L S + L QG ++R+DKFD N FQILTV D+ + PPGLWLNIQHDAFY QHNLSM+
Sbjct: 131 EELYSKVFLVQGDFTRSDKFDNNLFQILTVNDLVKNEAPPGLWLNIQHDAFYEQHNLSMK 190
Query: 239 SFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK 298
+FVLSVSR+V VNYISSPE FLR+I AR P +TKLVFRFL K E++P+TNQTYGSLLK
Sbjct: 191 NFVLSVSRTVNVNYISSPEAGFLRTIRARINPRITKLVFRFLEKDEVDPSTNQTYGSLLK 250
Query: 299 NLTFIKTFASGILVPKDYIWPVD-ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFN 357
NL IKTFASGILVPK YIWP+D SLYLLPHT++V DAHK LEVFAS+F ND+PIS+N
Sbjct: 251 NLASIKTFASGILVPKGYIWPIDPSSLYLLPHTSLVSDAHKVGLEVFASDFLNDVPISYN 310
Query: 358 YSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGAS 417
YSYDP+ EYL+FIDNG+FSVDGVLSDFPLTPS A+DCFAH+G NA+K N LVISK GAS
Sbjct: 311 YSYDPVAEYLNFIDNGNFSVDGVLSDFPLTPSEAIDCFAHVGLNATKKVNTLVISKYGAS 370
Query: 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI 477
GDYP CT+LAY+KAISDGVD +DCPVQMSK G+PFCLS I+LI STN AQS F+ + I
Sbjct: 371 GDYPPCTDLAYEKAISDGVDVLDCPVQMSKGGIPFCLSSIDLIESTNVAQSNFSKLGKII 430
Query: 478 PEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA 537
PEI +G+GIF+F L WD+I+TL P + NPY L+RNPK G F+ LSDFL + K
Sbjct: 431 PEIKSGNGIFTFDLAWDDIKTLTPSMLNPYSINSLYRNPKYNKKGHFLTLSDFLNLPKGQ 490
Query: 538 NSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE 597
SL GV+I+IENA YLA KQ +SVT +V++ L AGY+K A KVMIQST+SSVL+K +E
Sbjct: 491 TSLLGVVITIENAAYLARKQNLSVTEAVIDTLSKAGYDKPGAPKVMIQSTNSSVLLKFKE 550
Query: 598 KTSYELVYKVKENIRDALNQTIEDIKKFADSVVL 631
KT YELVYK+ E + DA++ I DIK+FA SVV+
Sbjct: 551 KTKYELVYKIDEIVGDAVDSAILDIKRFAHSVVV 584
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18416801|ref|NP_567755.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] gi|332278205|sp|Q9SZ11.3|GLPQ2_ARATH RecName: Full=Probable glycerophosphoryl diester phosphodiesterase 2; Flags: Precursor gi|332659838|gb|AEE85238.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/620 (58%), Positives = 472/620 (76%), Gaps = 11/620 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVL-TMSLY--LKRGTSSQT 645
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ +S++ + ++QT
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 646 QLWRSTHITRELVLMELLQN 665
+ ++ V +EL QN
Sbjct: 601 NVVEKLQKSQLPVYVELFQN 620
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4455192|emb|CAB36515.1| putative protein [Arabidopsis thaliana] gi|7269521|emb|CAB79524.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/625 (58%), Positives = 473/625 (75%), Gaps = 11/625 (1%)
Query: 50 NTRALGLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGI 103
N GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+
Sbjct: 9 NPTMRGLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGL 66
Query: 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163
FPDSS AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y
Sbjct: 67 FPDSSYDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYP 126
Query: 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLN 223
VNGVPT GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN
Sbjct: 127 VNGVPTSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLN 186
Query: 224 IQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKS 283
+QHDAFYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+
Sbjct: 187 VQHDAFYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQD 246
Query: 284 EIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEV 343
E EPTTN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEV
Sbjct: 247 EFEPTTNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEV 306
Query: 344 FASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNAS 403
F S FANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+
Sbjct: 307 FVSGFANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNAT 366
Query: 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINST 463
K + LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST
Sbjct: 367 KQVDFLVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNST 426
Query: 464 NAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGK 523
+ + F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK
Sbjct: 427 TVSLTAFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGK 486
Query: 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVM 583
LSDFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVM
Sbjct: 487 LFSLSDFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVM 546
Query: 584 IQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVL-TMSLY--LKRG 640
IQST+SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ +S++ +
Sbjct: 547 IQSTNSSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSF 606
Query: 641 TSSQTQLWRSTHITRELVLMELLQN 665
++QT + ++ V +EL QN
Sbjct: 607 ITTQTNVVEKLQKSQLPVYVELFQN 631
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15810483|gb|AAL07129.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/620 (58%), Positives = 471/620 (75%), Gaps = 11/620 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR+ KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSKKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVL-TMSLY--LKRGTSSQT 645
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ +S++ + ++QT
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 646 QLWRSTHITRELVLMELLQN 665
+ ++ V +EL QN
Sbjct: 601 NVVEKLQKSQLPVYVELFQN 620
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| TAIR|locus:2116377 | 759 | SHV3 "SHAVEN 3" [Arabidopsis t | 0.898 | 0.789 | 0.578 | 8.6e-191 | |
| TAIR|locus:2173977 | 766 | SVL1 "SHV3-like 1" [Arabidopsi | 0.886 | 0.771 | 0.582 | 1.5e-186 | |
| TAIR|locus:2085710 | 729 | SVL3 "SHV3-like 3" [Arabidopsi | 0.820 | 0.750 | 0.535 | 2.1e-155 | |
| TAIR|locus:2155816 | 753 | SVL4 "SHV3-like 4" [Arabidopsi | 0.875 | 0.775 | 0.484 | 4.2e-143 | |
| TAIR|locus:2161248 | 750 | SVL5 "SHV3-like 5" [Arabidopsi | 0.880 | 0.782 | 0.469 | 1.6e-141 | |
| TAIR|locus:2019642 | 392 | GDPD5 "glycerophosphodiester p | 0.307 | 0.522 | 0.273 | 3.8e-08 | |
| TAIR|locus:2142823 | 372 | GDPD6 "glycerophosphodiester p | 0.329 | 0.591 | 0.233 | 4.3e-08 |
| TAIR|locus:2116377 SHV3 "SHAVEN 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1849 (655.9 bits), Expect = 8.6e-191, P = 8.6e-191
Identities = 352/608 (57%), Positives = 451/608 (74%)
Query: 67 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSA 120
CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS AY+ ++TS
Sbjct: 13 CGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSV 72
Query: 121 PSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLN 180
P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVPT GWF+ID++L
Sbjct: 73 PDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTIDFSLK 132
Query: 181 DLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXX 240
DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDAFYAQHN
Sbjct: 133 DLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDAFYAQHNLSMSSF 192
Query: 241 XXXXXXXXXXNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300
++ISSPEVNF + IA RF + LVFRFLG+ E EPTTN+TYGS+L NL
Sbjct: 193 LVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPTTNRTYGSILSNL 252
Query: 301 TFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSY 360
TF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S FANDI I+ +YS+
Sbjct: 253 TFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGFANDIDIAHDYSF 312
Query: 361 DPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420
DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K + LVI+K+GASGDY
Sbjct: 313 DPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDFLVITKDGASGDY 372
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
P CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + + F + +TT+PE+
Sbjct: 373 PGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLTAFRNRSTTVPEL 432
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSL 540
+ I++FSL W EIQTL P ISNPY LFRNPK KNAGK LSDFL +AKN+ SL
Sbjct: 433 GSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLSDFLSLAKNSTSL 492
Query: 541 SGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTS 600
SGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+SSVL+ ++++
Sbjct: 493 SGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTNSSVLVDFKKQSQ 552
Query: 601 YELVYKVKENIRDALNQTIEDIKKFADSVVLT-MSLY--LKRGTSSQTQLWRSTHITREL 657
YE VYKV+ENIRD L+ IEDIKKFAD+VV+ +S++ + ++QT + ++
Sbjct: 553 YETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLP 612
Query: 658 VLMELLQN 665
V +EL QN
Sbjct: 613 VYVELFQN 620
|
|
| TAIR|locus:2173977 SVL1 "SHV3-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1809 (641.9 bits), Expect = 1.5e-186, P = 1.5e-186
Identities = 349/599 (58%), Positives = 440/599 (73%)
Query: 72 QVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQL 131
Q+ AQ S S WQTLTGD P V+ARGGFSG+ PDSS AYS TS P +LWCDVQL
Sbjct: 32 QLFAQRSK--SPWQTLTGDAPLVIARGGFSGLLPDSSLDAYSFVSQTSVPGAVLWCDVQL 89
Query: 132 TKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191
TKD G+CFPD+K+ NASNI ++ ++ +YL+NGVPT WF+ID+ DL+ +IL QG+
Sbjct: 90 TKDAIGLCFPDVKMMNASNIQDVYPKRKTSYLLNGVPTQDWFTIDFNFKDLTKVILKQGI 149
Query: 192 YSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXN 251
SR+ FDGN + I TV+D++ Q+KP G WLN+QHDAFYAQHN +
Sbjct: 150 LSRSAAFDGNSYGISTVKDISTQLKPEGFWLNVQHDAFYAQHNLSMSSFLLSISKTVIID 209
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGIL 311
Y+SSPEVNF R+I RF + K VFRFL K ++E +TNQTYGSL NLTF+KTFASG+L
Sbjct: 210 YLSSPEVNFFRNIGRRFGRNGPKFVFRFLEKDDVEVSTNQTYGSLAGNLTFLKTFASGVL 269
Query: 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID 371
VPK YIWP+ ES YLLP T+ V DAHK LEV+AS F ND +++NYS+DPL EYLSF+D
Sbjct: 270 VPKSYIWPI-ESQYLLPRTSFVQDAHKAGLEVYASGFGNDFDLAYNYSFDPLAEYLSFMD 328
Query: 372 NGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKA 431
NGDFSVDG+LSDFPLT S+AVDCF+HLG NAS + LVISKNGASGDYP CT+LAY KA
Sbjct: 329 NGDFSVDGLLSDFPLTASSAVDCFSHLGSNASSQVDFLVISKNGASGDYPGCTDLAYTKA 388
Query: 432 ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSL 491
I DG D IDC +QMS DG+PFCLS INL STN QS F + +TT+PEI + GI+SFSL
Sbjct: 389 IKDGADVIDCSLQMSSDGIPFCLSSINLGESTNVVQSPFRNRSTTVPEIGSLPGIYSFSL 448
Query: 492 IWDEIQTLIPQISNPYFK-FKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENA 550
W EIQTL P I NPY + F +FRNP+ +++GKF+ LSDFL +AKN++SL+GVLIS+ENA
Sbjct: 449 AWSEIQTLRPAIENPYSREFTMFRNPRERSSGKFVSLSDFLNLAKNSSSLTGVLISVENA 508
Query: 551 VYLAEKQGMSVTNSVMEALGNAGY-NKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKE 609
YL EKQG+ +V++ L AGY NK T +VMIQST+SSVL+ ++++ YE VYKV+E
Sbjct: 509 TYLREKQGLDAVKAVLDTLTEAGYSNKTTTTRVMIQSTNSSVLIDFKKQSRYETVYKVEE 568
Query: 610 NIRDALNQTIEDIKKFADSVVLTM-SLY--LKRGTSSQTQLWRSTHITRELVLMELLQN 665
IRD L+ IEDIKKFAD+VV++ S++ + T+ QT+L + V +E+ +N
Sbjct: 569 TIRDILDTAIEDIKKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPVYVEVFRN 627
|
|
| TAIR|locus:2085710 SVL3 "SHV3-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
Identities = 304/568 (53%), Positives = 401/568 (70%)
Query: 81 TSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICF 140
+S WQTL+G PP V+ARGGFSG+FPDSS AY L IT++P V+LWCD+QLTKD GICF
Sbjct: 22 SSSWQTLSGKPPAVIARGGFSGMFPDSSIQAYQLVNITTSPDVMLWCDLQLTKDGVGICF 81
Query: 141 PDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG 200
P+LKLDN SN+ +I +Y FS+D+T +LS++ L QGV SR FD
Sbjct: 82 PNLKLDNGSNVIRI----DPHYKER-------FSVDFTWKELSDVKLAQGVVSRPYIFDD 130
Query: 201 NGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNYISSPEVNF 260
IL ++++A+ + GLWLNIQ AFYA+HN N+ISSP ++F
Sbjct: 131 VS-SILAIEEVAK-LTASGLWLNIQDSAFYAKHNLSMRNSVVSLSRRLKVNFISSPGISF 188
Query: 261 LRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320
L+S+ +P++TKL+FRFL + IEP TNQ+YGSL KNL++I+TF+SGILVPK YIWPV
Sbjct: 189 LKSMKNSVKPTVTKLIFRFLKQEHIEPFTNQSYGSLAKNLSYIRTFSSGILVPKSYIWPV 248
Query: 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV 380
D +LYL PHT++V DAHKE L+VFAS FAND I++NYSYDP EYLSFIDNG+FSVDG
Sbjct: 249 DSALYLQPHTSLVTDAHKEGLQVFASEFANDFVIAYNYSYDPTAEYLSFIDNGNFSVDGF 308
Query: 381 LSDFPLTPSAAVDCFAHLG-KNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439
LSDFP+TP A++CF+H+ K A + A + +ISKNGASGD+P CT+LAYQ+A SDG D +
Sbjct: 309 LSDFPVTPYRAINCFSHVDPKRAKEQAKITIISKNGASGDFPGCTDLAYQRAASDGADIL 368
Query: 440 DCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG-SGIFSFSLIWDEIQT 498
DC VQMSKD +PFC+S +LINSTN ++ F ++++ + EI SGI++FSL +IQT
Sbjct: 369 DCNVQMSKDKIPFCMSSFDLINSTNVIETSFRNLSSVVSEINPRRSGIYTFSLTMSQIQT 428
Query: 499 LIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQG 558
L P ISN LFRNP+N AGKF+ LS+FL + +SL G+LI +ENA YL E QG
Sbjct: 429 LKPTISNLEKDSGLFRNPRNNKAGKFLTLSEFLFLPNRYSSLLGLLIEVENAAYLVEHQG 488
Query: 559 MSVTNSVMEALGNAG--YNKQTALKVMIQSTDSSVLMKLREKTSY---ELVYKVKENIRD 613
+SV ++V++ L A NK +A ++IQSTD SVLMK +EK ELVY+V +NIRD
Sbjct: 489 ISVVDAVLDELKRATTQQNKTSARTILIQSTDKSVLMKFKEKNKMNHDELVYRVDDNIRD 548
Query: 614 ALNQTIEDIKKFADSVVLTM-SLYLKRG 640
+ I+DIK FA S+V++ S++ +G
Sbjct: 549 VADSAIKDIKNFAGSIVISKKSVFPYKG 576
|
|
| TAIR|locus:2155816 SVL4 "SHV3-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
Identities = 288/595 (48%), Positives = 375/595 (63%)
Query: 66 HCGVIAQVSAQGSNAT--SRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSV 123
H V A + + A +W TL G P VVARGGFSG+FP+SS A L + TS+P
Sbjct: 13 HSSVAAPKTPAAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSISANDLAIGTSSPGF 72
Query: 124 ILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS 183
+ C++Q+TKD G+C D++LDNA+ I+ +F QK Y VNG GWF IDY + +
Sbjct: 73 TMLCNLQMTKDGVGLCLSDIRLDNATTISSVFPKAQKTYKVNGQDLKGWFVIDYDADTIF 132
Query: 184 N-IILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXX 242
N + L Q ++SR FDG + V+D+ KPP WL++Q+DAFY +H
Sbjct: 133 NKVTLVQNIFSRPSIFDGQ-MSVSAVEDVLGT-KPPKFWLSVQYDAFYMEHKLSPAEYLR 190
Query: 243 XXXXXXXXNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF 302
N ISSPE+ FL+SI + TKL+F F +EPTTN+ Y + +NL
Sbjct: 191 SLRFRGI-NVISSPEIGFLKSIGMDAGRAKTKLIFEFKDPEAVEPTTNKKYSEIQQNLAA 249
Query: 303 IKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDP 362
IK FASG+LVPKDYIWP+D + YL P TT V DAHK LEV+AS FAND+ SFNYSYDP
Sbjct: 250 IKAFASGVLVPKDYIWPIDSAKYLKPATTFVADAHKAGLEVYASGFANDLRTSFNYSYDP 309
Query: 363 LTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPS 422
EYL F+DNG FSVDGV++DFP T S ++ CF+H N K+ + LVI+ NGASGDYP
Sbjct: 310 SAEYLQFVDNGQFSVDGVITDFPPTASQSITCFSHQNGNLPKAGHALVITHNGASGDYPG 369
Query: 423 CTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482
CT+LAYQKAI DG D IDC VQMSKDG+ FC +L ST A ++ F S T++PEI
Sbjct: 370 CTDLAYQKAIDDGADIIDCSVQMSKDGIAFCHDAADLSASTTA-RTTFMSRATSVPEIQP 428
Query: 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSG 542
+GIFSF L W EIQ++ PQI NP+ RNP NKNAGKF L+DFLE+ K A +++G
Sbjct: 429 TNGIFSFDLTWAEIQSVKPQIENPFTATGFQRNPANKNAGKFTTLADFLELGK-AKAVTG 487
Query: 543 VLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYE 602
VLI+I+NA YLA K+G+ V + V AL N+ +KQ+ KV+IQS DSSVL Y
Sbjct: 488 VLINIQNAAYLASKKGLGVVDVVKSALTNSTLDKQSTQKVLIQSDDSSVLSSFEAVPPYT 547
Query: 603 LVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQLWRSTHITREL 657
V + + I DA +IE+IKK AD+V L + + T SQ+ T++ E+
Sbjct: 548 RVLSIDKEIGDAPKTSIEEIKKHADAVNLLRTSLI---TVSQSFATGKTNVVEEM 599
|
|
| TAIR|locus:2161248 SVL5 "SHV3-like 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
Identities = 280/596 (46%), Positives = 379/596 (63%)
Query: 74 SAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK 133
+A + +W TL G P VVARGGFSG+FP+SS+ A L + TS+P + + C++Q+TK
Sbjct: 23 AAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSASANDLAIGTSSPGLTMLCNLQMTK 82
Query: 134 DEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDL-SNIILNQGVY 192
D G+C D+ LDNA+ I+ +F QK Y VNG GWF +DY + + +N+ L Q ++
Sbjct: 83 DGVGLCLSDIILDNATTISSVFPKAQKTYKVNGQDLKGWFVLDYDADTIFNNVTLVQNIF 142
Query: 193 SRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNY 252
SR FDG + V+D+ KPP WL++Q+DAFY +H N
Sbjct: 143 SRPSIFDGQ-MSVSAVEDVLGT-KPPKFWLSVQYDAFYMEHKLSPAEYLRSLQFRGI-NV 199
Query: 253 ISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILV 312
ISSPE+ FL+SI + TKL+F F +EPTTN+ Y + +NL IK FASG+LV
Sbjct: 200 ISSPEIGFLKSIGMDAGRAKTKLIFEFKDPEAVEPTTNKKYSEIQQNLAAIKAFASGVLV 259
Query: 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDN 372
PKDYIWP+D + YL P TT V DAHK LEV+AS FAND+ SFNYSYDP EYL F+DN
Sbjct: 260 PKDYIWPIDSAKYLKPATTFVADAHKAGLEVYASGFANDLRTSFNYSYDPSAEYLQFVDN 319
Query: 373 GDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAI 432
G FSVDGV++DFP T S ++ CF+H N K+ + LVI+ NGASGDYP CT+LAYQKA+
Sbjct: 320 GQFSVDGVITDFPPTASQSITCFSHQNGNLPKAGHALVITHNGASGDYPGCTDLAYQKAV 379
Query: 433 SDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492
DG D IDC VQMSKDG+ FC +L ST A + F S T++PEI +GIFSF L
Sbjct: 380 DDGADVIDCSVQMSKDGIAFCHDAADLTASTTA-MTIFMSRATSVPEIQPTNGIFSFDLT 438
Query: 493 WDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVY 552
W EIQ++ PQI NP+ RNP NKNAGKF+ L+DFL+ +K A +++GV+I+IENA Y
Sbjct: 439 WAEIQSVKPQIENPFTATGFQRNPANKNAGKFITLADFLDFSK-AKAVTGVMINIENAAY 497
Query: 553 LAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR 612
LA K+G+ V ++V AL + +KQ+ KV+IQS DSSVL Y V + + I
Sbjct: 498 LASKKGLGVVDAVKSALAKSTLDKQSTQKVLIQSDDSSVLASFEAVPPYTRVLSIDKEIG 557
Query: 613 DALNQTIEDIKKFADSV-VLTMSLYL--KRGTSSQTQLWRSTHITRELVLMELLQN 665
A ++++IKK+A++V +L SL + T+ +T + H V + +L+N
Sbjct: 558 GAPKPSVDEIKKYAEAVNLLRTSLVTVSQSFTTGKTNVVEEMHKGNISVYVSVLRN 613
|
|
| TAIR|locus:2019642 GDPD5 "glycerophosphodiester phosphodiesterase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 62/227 (27%), Positives = 100/227 (44%)
Query: 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKF 470
I+ G++G+ P T AY KAI +G DFI+ + SKDGV C L +TN A K
Sbjct: 47 IAHRGSNGEIPEETTAAYLKAIEEGTDFIETDILSSKDGVLICFHDCILDETTNVASHKE 106
Query: 471 NSITTTIPEIMAGS--GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
+ ++ + G F+F E++ L +I Y FR+ + +
Sbjct: 107 FADRKRTYDVQGFNITGFFTFDFTLKELKQL--RIKQRY----AFRDQQYNGMYPIITFE 160
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQ----GMSVTNSVMEALGNAGY-----NKQTA 579
+FL +A++A + G+ I+N V + + G + V+E L GY +K+
Sbjct: 161 EFLTIARDAPRVVGIYPEIKNPVLMNQHVKWPGGKKFEDKVVETLKKYGYGGSYLSKKWL 220
Query: 580 LK-VMIQS---TDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDI 622
K + IQS T + L + L+ V +D NQT +I
Sbjct: 221 KKPLFIQSFAPTSLVYISNLTDSPKVLLIDDVTMPTQDT-NQTYAEI 266
|
|
| TAIR|locus:2142823 GDPD6 "glycerophosphodiester phosphodiesterase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 56/240 (23%), Positives = 110/240 (45%)
Query: 397 HLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSF 456
H K +++ ++ G++G+ P T AY +AI +G DFI+ + SKDGV C
Sbjct: 33 HATKKPLQTSRPYNLAHRGSNGELPEETAPAYMRAIEEGADFIETDILSSKDGVLICHHD 92
Query: 457 INLINSTNAAQSKFNSITTTIPEI--MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFR 514
+NL ++T+ A K + E+ M +G F+ E++TL + P FR
Sbjct: 93 VNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLKELKTLGAKQRYP------FR 146
Query: 515 NPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK----QGMSVTNSVMEALG 570
+ + + +++ +A +A + G+ I+N V++ ++ G + +E L
Sbjct: 147 DQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFMNQQVKWADGKKFEDKFVETLK 206
Query: 571 NAGYN----KQTALK--VMIQSTDSSVLMKLREKTSYELVYKVKEN--IRDALNQTIEDI 622
GY + LK + IQS ++ L+ + T ++ + + + + N+T +I
Sbjct: 207 KYGYKGSYLSEDWLKQPIFIQSFAATSLVYISNMTDSPKLFLIDDVTILTEDTNKTYAEI 266
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SZ11 | GLPQ2_ARATH | 3, ., 1, ., 4, ., 4, 6 | 0.5887 | 0.9130 | 0.8023 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 667 | |||
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 1e-169 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 1e-117 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 1e-111 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 2e-89 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 2e-34 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 6e-25 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 2e-21 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 6e-21 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 2e-16 | |
| pfam03009 | 238 | pfam03009, GDPD, Glycerophosphoryl diester phospho | 1e-14 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 2e-12 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 3e-09 | |
| cd08556 | 189 | cd08556, GDPD, Glycerophosphodiester phosphodieste | 6e-08 | |
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 7e-08 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 8e-08 | |
| cd08601 | 256 | cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p | 9e-07 | |
| PRK11143 | 355 | PRK11143, glpQ, glycerophosphodiester phosphodiest | 5e-06 | |
| cd08563 | 230 | cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph | 1e-05 | |
| cd08610 | 316 | cd08610, GDPD_GDE6, Glycerophosphodiester phosphod | 1e-05 | |
| cd08570 | 234 | cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste | 2e-05 | |
| cd08581 | 229 | cd08581, GDPD_like_1, Glycerophosphodiester phosph | 2e-05 | |
| cd08582 | 233 | cd08582, GDPD_like_2, Glycerophosphodiester phosph | 1e-04 | |
| cd08580 | 263 | cd08580, GDPD_Rv2277c_like, Glycerophosphodiester | 3e-04 | |
| cd08574 | 252 | cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester pho | 4e-04 | |
| cd08566 | 240 | cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph | 0.001 | |
| cd08562 | 229 | cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p | 0.002 | |
| cd08575 | 264 | cd08575, GDPD_GDE4_like, Glycerophosphodiester pho | 0.002 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 0.003 | |
| cd08609 | 315 | cd08609, GDPD_GDE3, Glycerophosphodiester phosphod | 0.003 |
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 484 bits (1249), Expect = e-169
Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 1/300 (0%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+ARGGFSG+FPDSS AY +S+P V LWCD+QLTKD GIC PDL LDN++ I
Sbjct: 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTI 60
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDM 211
A+++ ++K Y VNGV T GWFS+D+TL +L + L QG++SRT FDG + I TV+D+
Sbjct: 61 ARVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQ-YPISTVEDV 119
Query: 212 ARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPS 271
KP GLWLN+QHDAFY QHNLSM S++LS+S++V V+YISSPEV FL+SI R +
Sbjct: 120 VTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVDYISSPEVGFLKSIGGRVGRN 179
Query: 272 MTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331
TKLVFRFL K ++EP+TNQTYGS+LKNLTFIKTFASGILVPK YIWPVD YL P T+
Sbjct: 180 GTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239
Query: 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391
+V DAHK LEV+AS FAND IS+NYSYDP+ EYLSF+ NG+FSVDGVLSDFP+T S A
Sbjct: 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASEA 299
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299 |
| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 352 bits (904), Expect = e-117
Identities = 150/224 (66%), Positives = 179/224 (79%), Gaps = 1/224 (0%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
L+IS NGASGDYP CT+LAYQKA+ DG D IDC VQMSKDGVPFCL INLINST A S
Sbjct: 2 LIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATS 61
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
KF++ TT+PEI + SGIF+F L W EIQTL P ISNPY LFRNP NKNAGKF+ LS
Sbjct: 62 KFSNRATTVPEIGSTSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLS 121
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL++AKN SLSGVLI++ENA YLAEK+G+ V ++V++AL NAGY+ QTA KV+IQSTD
Sbjct: 122 DFLDLAKN-KSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLIQSTD 180
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLT 632
SSVL +++ SYE VY V E IRDA + +IE+IKKFAD+VV+
Sbjct: 181 SSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVID 224
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function. Length = 300 |
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 335 bits (862), Expect = e-111
Identities = 134/314 (42%), Positives = 186/314 (59%), Gaps = 26/314 (8%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+ARGG SG +PDS+ +AY + A +L CDVQLTKD IC P + LDN++ I
Sbjct: 1 PLVIARGGASGDYPDSTDLAYQKAISDGA--DVLDCDVQLTKDGVPICLPSINLDNSTTI 58
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR---TDKFDGNGFQILTV 208
A +F ++K Y+V G T G FS D T ++ + + + N +ILT+
Sbjct: 59 ASVFPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTL 118
Query: 209 QDMARQIKP---PGLWLNIQHDAFYAQH--NLSMRSFVLSVSR-----SVVVNYISSPEV 258
+D KP G+W+N+++ AF A+H LS+ + + S+S+ + YISSP+
Sbjct: 119 EDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYDQTAKKVYISSPDS 178
Query: 259 NFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIW 318
+ L+S R TKLVFR L + EP T LL NLT IK FASG+LVPK YIW
Sbjct: 179 SVLKSFKKRVG---TKLVFRVLDVDDTEPDT------LLSNLTEIKKFASGVLVPKSYIW 229
Query: 319 PVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSV 377
PVD +L P T++V DAHK LEV+ S FAN+ + ++++YS DP E LSF+ NG SV
Sbjct: 230 PVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNG-NSV 288
Query: 378 DGVLSDFPLTPSAA 391
DGV++DFP T + A
Sbjct: 289 DGVITDFPATAARA 302
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. Length = 302 |
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 2e-89
Identities = 118/245 (48%), Positives = 149/245 (60%), Gaps = 15/245 (6%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI++ GASGDYP T+LAYQKAISDG D +DC VQ++KDGVP CL INL NST A
Sbjct: 2 LVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV 61
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
T + E + SGIFSF L W EIQTL P ISNP+ FRNP+N NAGK + L
Sbjct: 62 FPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVL--FRNPRNDNAGKILTLE 119
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AK SLSGV I++ENA +LAE +G+ ++V+ +L AGY+ QTA KV I S D
Sbjct: 120 DFLTLAKP-KSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYD-QTAKKVYISSPD 177
Query: 589 SSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVL--------TMSLYL 637
SSVL +++ V V + D L + +IKKFA V++ +L
Sbjct: 178 SSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDSFL 237
Query: 638 KRGTS 642
TS
Sbjct: 238 TPQTS 242
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. Length = 302 |
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 91/322 (28%), Positives = 141/322 (43%), Gaps = 41/322 (12%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+A G SG P+ + AY L + A + D+ TKD IC + +L +++
Sbjct: 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDV 58
Query: 152 AQI--FKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQ 209
A F ++ V+GV GWF+ D+TL +L + Q + R +DG F I T +
Sbjct: 59 ADHPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPYRDQSYDGQ-FPIPTFE 117
Query: 210 DM--------ARQIKPPGLWLNIQHDAFYAQH-NLSMRSFVLSV--------SRSVVVNY 252
++ A + G++ I+H ++ L M +L ++ V +
Sbjct: 118 EIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKAPV--F 175
Query: 253 ISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT------TNQTYGSLL--KNLTFIK 304
I S EV L+ + + T L L P ++TY L L I
Sbjct: 176 IQSFEVTNLKYLR-----NKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIA 230
Query: 305 TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAN-DIPISFNYSYDPL 363
T+A GI KD I P D + L T +V DAH L+V F N + + ++ DP
Sbjct: 231 TYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPY 290
Query: 364 TEYLSFIDNGDFSVDGVLSDFP 385
EY +F+D G VDG+ +DFP
Sbjct: 291 AEYRAFLDAG---VDGLFTDFP 309
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 |
| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-25
Identities = 84/317 (26%), Positives = 126/317 (39%), Gaps = 44/317 (13%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+A G SG P+ + AY+L + A + D+ +TKD + D LD +N+
Sbjct: 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNV 58
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS----NIILNQGVYSRTDKFDGNGFQILT 207
A+ F + G G+F ID+TL +L NQ R + G F+I T
Sbjct: 59 AEHFPFR-------GRKDTGYFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGG-FKIPT 110
Query: 208 VQD--------MARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSV--------SRSVVVN 251
+++ + G++ +H F+ Q + +L V V
Sbjct: 111 LEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEEKLLEVLKKYGYTGKNDPV-- 168
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL--KNLTFIKTFASG 309
+I S E L+ + P + LV E TY L L I +A G
Sbjct: 169 FIQSFEPESLKRLRNET-PDI-PLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADG 226
Query: 310 ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLS 368
I K I P D + LL T +V DAHK L V F N+ + ++ ++ D Y
Sbjct: 227 IGPWKSLIIPEDSN-GLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDMDALYN- 284
Query: 369 FIDNGDFSVDGVLSDFP 385
VDGV +DFP
Sbjct: 285 -----AAGVDGVFTDFP 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs. Length = 296 |
| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-21
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 29/238 (12%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+ GASG P T AY AI G D+I+ + M+KDGV L +TN A+
Sbjct: 2 LVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEH 61
Query: 469 KFNSITTTIPEI-MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKL 527
P +G F E++TL + + + + R P K L
Sbjct: 62 F--------PFRGRKDTGYFVIDFTLAELKTL--RAGSWFNQRYPERAPSYYGGFKIPTL 111
Query: 528 SDFLEMAKNANSLS----GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVM 583
+ +E+A+ N + G+ ++ + ++G + ++E L GY + V
Sbjct: 112 EEVIELAQGLNKSTGRNVGIYPETKHPTFHK-QEGPDIEEKLLEVLKKYGYTGKND-PVF 169
Query: 584 IQSTDSSVLMKLREKT-SYELVYKVKEN-IRDALNQT----------IEDIKKFADSV 629
IQS + L +LR +T LV + + + +++I K+AD +
Sbjct: 170 IQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGI 227
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs. Length = 296 |
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 6e-21
Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 16/236 (6%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+ GASG P T AYQ AI G DFI+ + +KDGV C L +T+ A
Sbjct: 2 LVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADH 61
Query: 469 K--FNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMK 526
+ TT + + +G F+ E++TL + PY R+
Sbjct: 62 PEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPT 115
Query: 527 LSDFLEMAKNANSLS----GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
+ + +AK A++ + G+ I++ Y G+ + + ++E L GY + A V
Sbjct: 116 FEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKA-PV 174
Query: 583 MIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLK 638
IQS + + L LR KT LV + + + D + +AD LT LK
Sbjct: 175 FIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYAD---LTTDAGLK 227
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 |
| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 38/315 (12%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P +++ G SG +P + +AY + A ++ C VQ++KD C + L N++ +
Sbjct: 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTV 58
Query: 152 AQ-IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSN---IILN---QGVYSRTDKFDGNGFQ 204
A F + G T G F+ D T +++ I N R G +
Sbjct: 59 ATSKFSNRATTVPEIG-STSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAG-K 116
Query: 205 ILTVQD---MARQIKPPGLWLNIQHDAFYAQH-NLSMRSFVL-SVSRSVVVN------YI 253
LT+ D +A+ G+ +N+++ A+ A+ L + VL +++ + N I
Sbjct: 117 FLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLI 176
Query: 254 SSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313
S + + L + + + V+ ++ T S ++ IK FA +++
Sbjct: 177 QSTDSSVLAAFKKQ---ISYERVYV------VDETIRDASDSSIEE---IKKFADAVVID 224
Query: 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN 372
+ ++PV S +L T +V L V+ N+ + ++F++ DP E S++
Sbjct: 225 RGSVFPVSTS-FLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYV-- 281
Query: 373 GDFSVDGVLSDFPLT 387
VDG +++FP T
Sbjct: 282 QGAGVDGFITEFPAT 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function. Length = 300 |
| >gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 42/218 (19%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474
GASGDYP T LA++KA G D+I+ VQ++KDGVP + L +T+ A
Sbjct: 3 GASGDYPENTLLAFRKAAEAGADYIEFDVQLTKDGVPVVMHDFTLDRTTDGAG------- 55
Query: 475 TTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMA 534
L +E++ L + F R P L + LE
Sbjct: 56 ------------RVKDLTLEELKKLDA-GAGNSPPFSGERVP--------PTLEEVLERW 94
Query: 535 KNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG---YNKQTALKVMIQSTDSSV 591
++ + I ++V + A K +V+ S +
Sbjct: 95 DVGLNI-EIKIKQTPEA-------IAVEELGIVKDLLASVDEILKVDPRRVIFSSFNPDA 146
Query: 592 LMKLREK-TSYELV--YKVKENIRDALNQTIEDIKKFA 626
L +LRE + LV + D L + A
Sbjct: 147 LQRLRELAPTLPLVFLTSGRAPALDPLERAAAAAGAPA 184
|
E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold. Length = 238 |
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
++I+ GASG P T A A + G D+++ V ++KD + L N TN A+
Sbjct: 2 IIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE- 60
Query: 469 KFNSITTTIPEIMAGSGIFSFSLI---WDEIQTLIPQISNPYF-----KFKLFRN--PKN 518
KF P+ G + +I DE+++L ++ + K +++ N P
Sbjct: 61 KF-------PDRKRKDG--RYYVIDFTLDELKSL--SVTERFDIENGKKVQVYPNRFPLW 109
Query: 519 KNAGKFMKLSDFLEMAKNANSLSG--VLISIE-NAVYLAEKQGMSVTNSVMEALGNAGYN 575
K+ K L + +E+ + N +G V I E A + ++G + + +E L GY
Sbjct: 110 KSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYT 169
Query: 576 KQTALKVMIQSTDSSVLMKLREKTSYELVYKVK 608
+ KV +Q+ D + L +++ + ++ +K
Sbjct: 170 SKND-KVYLQTFDPNELKRIKNELLPKMGMDLK 201
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria. Length = 318 |
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 78/330 (23%), Positives = 131/330 (39%), Gaps = 53/330 (16%)
Query: 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ 153
++A G SG P+ + A +L A L DV LTKD+ + D LDN +N+A+
Sbjct: 3 IIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAE 60
Query: 154 IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT--------DKFDGN--GF 203
F +++ ++ ID+TL++L ++ + + ++F F
Sbjct: 61 KFPDRKR-------KDGRYYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDF 113
Query: 204 QILTVQDMARQI--------KPPGLWLNIQHDAFYAQHNLSMRSFVLSV-------SRSV 248
+I T+++ I K G++ I+ F+ Q + + L V S++
Sbjct: 114 KIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYTSKND 173
Query: 249 VVNYISSPEVNFLRSIAARFRPSMT---KLVFRFLGKSEIEPT--------TNQTYGSLL 297
V Y+ + + N L+ I P M KLV + + ++ T N Y +
Sbjct: 174 KV-YLQTFDPNELKRIKNELLPKMGMDLKLV-QLIAYTDWGETQEKDPGGWVNYDYDWMF 231
Query: 298 K--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPIS 355
L I +A G+ I S + T +V DAH+ LEV D
Sbjct: 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPE 291
Query: 356 FNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385
+ D L + L VDGV +DFP
Sbjct: 292 YAKDADQLLDALLN----KAGVDGVFTDFP 317
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria. Length = 318 |
| >gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
+I+ GASG+ P T A++KA+ G D ++ VQ++KDGV +
Sbjct: 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVI 45
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases. Length = 189 |
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 48/260 (18%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGV-DF-IDCPVQMSKDGVPFCLSFINLINSTNAA 466
LVI++ G SG +P + AYQ A S D + C +Q++KDGV CL +NL NST A
Sbjct: 2 LVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIA 61
Query: 467 QSKFNSITTTIPEIMAGSGIFSFSLIWDEIQ--TLIPQISN--PYFKFKLFRNPKNKNAG 522
+ T ++ G FS E+Q TLI I + P F +
Sbjct: 62 RVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQ----------- 110
Query: 523 KFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
+S ++ A G+ +++++ + + +S+++ ++ +K +
Sbjct: 111 --YPISTVEDVVTLAKP-EGLWLNVQHDAFYQQ-HNLSMSSYLL------SLSKTVKVDY 160
Query: 583 MIQSTDSSVLMKL-----REKTSYELVYKVKENIRDALNQT-------IEDIKKFADSVV 630
I S + L + R T + K+++ + NQT + IK FA ++
Sbjct: 161 -ISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGIL 219
Query: 631 --------LTMSLYLKRGTS 642
+ YL+ TS
Sbjct: 220 VPKSYIWPVDSDQYLQPATS 239
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299 |
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
A L+I+ GASG P T A++ A G D+I+ VQ++KDGV +
Sbjct: 3 LAMPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVI 52
|
Length = 257 |
| >gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAA 466
VI+ GASG P T AY A G D+I+ +QM+KDGV + L +TN
Sbjct: 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIE 59
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 256 |
| >gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 40/215 (18%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ SA +VI+ GASG P T A A + G D+++ + M+KD L L
Sbjct: 21 AADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDR 80
Query: 462 STNAAQSKFNSITTTIPEIMAGSGIF---SFSLIWDEIQTLIPQISNPYFKFKLFRNPKN 518
T+ A+ +F P+ G + F+L DEI++L KF + +N
Sbjct: 81 VTDVAE-RF-------PDRARKDGRYYAIDFTL--DEIKSL---------KFTEGFDIEN 121
Query: 519 KN-----AGKF-MKLSDF--------LEMAKNANSLSGVLISIE---NAVYLAEKQGMSV 561
G+F M SDF +E + N +G I I A + ++G +
Sbjct: 122 GKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHHQEGKDI 181
Query: 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLR 596
V+E L GY + KV +Q D++ L +++
Sbjct: 182 AAKVLEVLKKYGYTGKDD-KVYLQCFDANELKRIK 215
|
Length = 355 |
| >gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L+ + G SG P T LA++KAI G D I+ V ++KDG
Sbjct: 2 LIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQL 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. Length = 230 |
| >gnl|CDD|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
+I GA P T ++++KAI G ++ V +S DGVPF + L
Sbjct: 25 IIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTL---------- 74
Query: 470 FNSITTTIPEIMAGSGIFSFSLI-WDEIQTLIPQISNPYFKFKLFRNPK-----NKNAGK 523
TT I E+ S + + WD + TL + K + F N K +K +
Sbjct: 75 --KRTTNIGEVQPESACENPAFFNWDFLSTL--NAGKWFVKPRPFYNMKPLSEADKERAR 130
Query: 524 ---FMKLSDFLEMAKNANSL 540
KLS+FL +A+ N L
Sbjct: 131 NQSIPKLSNFLRLAEKENKL 150
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. Length = 316 |
| >gnl|CDD|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV 450
VI G YP T LA++KA+ G D I+ V ++KDGV
Sbjct: 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGV 41
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholipase C-type degradation mechanism. YPL206cp has been characterized as a PG-specific phospholipase C that selectively catalyzes the cleavage of PG, not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate. Members in this family are distantly related to S. cerevisiae YPL110cp, which selectively hydrolyzes glycerophosphocholine (GPC), not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate, and has been characterized as a cytoplasmic GPC-specific phosphodiesterase. Length = 234 |
| >gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
G YP T + ++ A+ G F++ VQ+S DGVP
Sbjct: 6 GYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVP 42
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 229 |
| >gnl|CDD|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG 449
VI+ GAS + P T A++ A G D I+ V+++KDG
Sbjct: 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDG 40
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 233 |
| >gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L+++ G + D P T LA KA+++G D I VQ+SKDGVP
Sbjct: 2 LIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVP 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. Length = 263 |
| >gnl|CDD|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 27/131 (20%)
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
P T ++++KA+ GV ++ V +S DGVPF + L +TN A F
Sbjct: 15 PENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVA-DVFPERAHE---- 69
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISN---------PYFKFKLFRNPKNKNAG--KFMKLSD 529
+ +F+ W ++Q L N P++ + AG L++
Sbjct: 70 --RASMFT----WTDLQQL-----NAGQWFLKDDPFWTASSLSESDREEAGNQSIPSLAE 118
Query: 530 FLEMAKNANSL 540
L +AK N
Sbjct: 119 LLRLAKKHNKS 129
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bone tissues and spleen. It selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol and functions as an inducer of osteoblast differentiation. Mammalian GDE6 is predominantly expressed in the spermatocytes of testis, and its specific physiological function has not been elucidated yet. Length = 252 |
| >gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPF 452
LV++ G G P + A + AI G D ++ V+ +KDGV
Sbjct: 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLV 45
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. Length = 240 |
| >gnl|CDD|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
+I+ GAS P T A++ A GV +++ V++S DG +
Sbjct: 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLI 45
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity. Length = 229 |
| >gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L I+ G + ++P T A++ A+ +G D ++ VQ++KDG
Sbjct: 2 LHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQV 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. Length = 264 |
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 87 LTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146
T P ++A G SG P+++ A+ L A + DVQLTKD + D LD
Sbjct: 1 ATLAMPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLD 58
Query: 147 NASN 150
+N
Sbjct: 59 RTTN 62
|
Length = 257 |
| >gnl|CDD|176551 cd08609, GDPD_GDE3, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
++ GA P T ++ +K++ GV + V +SKDGVPF + L+ +TN +
Sbjct: 29 LVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTN-VKDV 87
Query: 470 FNSITTTIPE-IMAGSGIFSFSLIWDEIQTLIPQI----SNPYFKFKLFRNPKNKNAG-- 522
F P AGS F+ W E++TL P++ + A
Sbjct: 88 F-------PGRDAAGSNNFT----WTELKTLNAGSWFLERRPFWTLSSLSEEDRREADNQ 136
Query: 523 KFMKLSDFLEMAKNAN 538
LS+ L++AK N
Sbjct: 137 TVPSLSELLDLAKKHN 152
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalian GDE3 functions as an inducer of osteoblast differentiation. It also plays a critical role for actin cytoskeletal modulation. The catalytic activity of GDPD domain is essential for mammalian GDE3 cellular function. Length = 315 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 99.97 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 99.97 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.96 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.95 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.94 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.93 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.89 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.89 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.83 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.82 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 99.17 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.16 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.07 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 98.2 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 98.14 | |
| PF13653 | 30 | GDPD_2: Glycerophosphoryl diester phosphodiesteras | 98.09 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 98.06 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 97.98 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 97.82 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 97.79 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 97.64 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 97.4 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 97.06 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 96.95 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 96.6 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 95.66 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 95.38 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 95.36 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 95.28 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 95.25 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 95.19 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 95.18 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 95.13 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 95.12 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 95.1 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 94.89 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 94.82 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 94.74 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 94.64 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 94.42 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 94.31 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 94.29 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 93.9 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 93.7 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 93.6 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 93.59 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 93.45 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 93.37 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 93.31 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 93.3 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 93.23 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 93.17 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 92.91 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 92.87 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 92.81 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 92.69 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 92.52 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 92.26 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 91.67 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 91.6 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 91.02 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 90.14 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 89.52 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 89.45 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 87.72 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 86.94 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 85.44 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 84.86 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 84.28 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 83.94 | |
| PRK06852 | 304 | aldolase; Validated | 82.6 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 81.96 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 81.29 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 81.27 | |
| cd00137 | 274 | PI-PLCc Catalytic domain of prokaryotic and eukary | 80.35 |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=489.71 Aligned_cols=298 Identities=64% Similarity=1.113 Sum_probs=271.6
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|+++|+++.+||||||+||||++||+||.+|+|+||+...|++|++++.++|++..|
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g 80 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKG 80 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCC
Confidence 68999999999999999999999999999422899999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhcCCcHHHHHHHHHhhcCCc
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~~ 251 (667)
|++.||||+||++|++.+++..+++.|+| .++||||+|+|++++..++++|||+|.++.+.+.++++.++++|++++.+
T Consensus 81 ~~~~d~TlaELk~L~~~~~~~~r~~~~~g-~~~IpTLeEvl~~~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~~v 159 (299)
T cd08603 81 WFSVDFTLAELQQVTLIQGIFSRTPIFDG-QYPISTVEDVVTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVD 159 (299)
T ss_pred ceeccCCHHHHhhCCCCCCcccCCcccCC-cCCCCCHHHHHHHhHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcCcE
Confidence 99999999999999998776667888888 56999999999999888999999999999999999999999999999999
Q ss_pred eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCCCCCChH
Q 005970 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331 (667)
Q Consensus 252 ~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~~~ 331 (667)
+||||+...|+++++.....+.++++.+++.+.+.+..+..|++|..+|++|++||++++|++.+++|.+.++++..++.
T Consensus 160 ~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~ 239 (299)
T cd08603 160 YISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239 (299)
T ss_pred EEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHHhHHHHHHHHhhcCCChhheeecCCCCcccCccH
Confidence 99999999999999863111578887677666666667789999999999999999999999999999877777888889
Q ss_pred HHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchh
Q 005970 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (667)
Q Consensus 332 ~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~ 390 (667)
+|+.||++||.||+||+++|....++|..|+..|+..+++.|++||||||||+|+++.+
T Consensus 240 lV~~Ah~agL~Vh~~tfr~e~~~~~~~~~d~~~e~~~~~~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred HHHHHHHcCCeEEEEEeeCCCCccccccCCHHHHHHHHHhcCCCCCCEEEecCchhhcc
Confidence 99999999999999999999668888888999999999987767799999999998764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=422.21 Aligned_cols=287 Identities=44% Similarity=0.732 Sum_probs=231.3
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|+++||| +||||||+||||++||+||.+|+||||+.+.++.+++++.++|.+..|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g 78 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGAD--VLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSG 78 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCC--EEEeeeeEcCCCcEEEeCCchhcCCcccccccccccceecccCcccCC
Confidence 689999999999999999999999999999 999999999999999999999999999999999999999999998889
Q ss_pred cccccCCHHhhcccccccccc----CCCCCCCCCCCccCCHHHHHHhhCC---CceEEeccCchhhhh-cCCcHHHHHHH
Q 005970 172 WFSIDYTLNDLSNIILNQGVY----SRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQ-HNLSMRSFVLS 243 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~----~~~~~~~~~~~~iptL~e~l~~~~~---~~~~ieiK~~~~~~~-~~~~~~~~l~~ 243 (667)
++|.||||+||++|+++.++. .+.+.|.+ +++||||+|+|++++. .+++||||.+..... .+..+++.+++
T Consensus 79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 157 (302)
T cd08571 79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDN-AGKILTLEDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLT 157 (302)
T ss_pred eeeeeCCHHHHhhCcccccCcccccCCCcccCC-CCCcCCHHHHHHhhhccCCceEEEEccCchhhhhhccccHHHHHHH
Confidence 889999999999999865332 24455666 6799999999999975 579999997654332 12468889999
Q ss_pred HHhhcCC------ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccc
Q 005970 244 VSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYI 317 (667)
Q Consensus 244 ~l~~~~~------~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~ 317 (667)
+++++++ ++||||++.+|+++++..+.+..++++ +.... .. .+ ....+.++..||.++++++..+
T Consensus 158 ~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~-l~~~~--~~----~~--~~~~l~~~~~~a~~v~~~~~~~ 228 (302)
T cd08571 158 SLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLVFRVL-DVDDT--EP----DT--LLSNLTEIKKFASGVLVPKSYI 228 (302)
T ss_pred HHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCceEEEe-ecCCC--cC----CC--ChhHHHHHHHhcCccccChhHe
Confidence 9999865 389999999999999985112455554 32111 00 00 0112567777899999988777
Q ss_pred cccCCCCCCCCChHHHHHHHHcCCeEEEEeccCC-CCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhh
Q 005970 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (667)
Q Consensus 318 ~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~ 391 (667)
.|.+...+...++.+|+.+|++|++|++||||++ ....|.|..|+..++..++..+ +||||||||+|++++++
T Consensus 229 ~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~-~gVDGiiTD~P~~~~~~ 302 (302)
T cd08571 229 WPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNG-NSVDGVITDFPATAARA 302 (302)
T ss_pred eecCCCCcccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhc-CCCCEEEecCchhhhcC
Confidence 6643223344456899999999999999999987 4578888889999999999761 14999999999988764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv |
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=411.96 Aligned_cols=284 Identities=31% Similarity=0.487 Sum_probs=235.7
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccc--cccccccccccCCCCC
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ--IFKTQQKNYLVNGVPT 169 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~--~~~~~~~~~~~~g~~~ 169 (667)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+ .|+.|++++.++|.+.
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~ 78 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNV 78 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCccc
Confidence 689999999999999999999999999999 999999999999999999999999999876 3788888888899888
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--------CCceEEeccCchhhhh-cCCcHHHH
Q 005970 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ-HNLSMRSF 240 (667)
Q Consensus 170 ~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--------~~~~~ieiK~~~~~~~-~~~~~~~~ 240 (667)
.|++|.+|||+||++|+++.++..+++.|.+ .++||||+|+|++++ +.+++||||.+..... .+..+++.
T Consensus 79 ~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 157 (309)
T cd08602 79 TGWFTEDFTLAELKTLRARQRLPYRDQSYDG-QFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDK 157 (309)
T ss_pred CCeeeccCCHHHHhhCccCCcCcccCcccCC-CcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHH
Confidence 8888999999999999999887554555666 569999999999985 3579999997664332 34578999
Q ss_pred HHHHHhhcCC------ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCcc---C--CCCCcchhHHhh--cHHHHHhhc
Q 005970 241 VLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI---E--PTTNQTYGSLLK--NLTFIKTFA 307 (667)
Q Consensus 241 l~~~l~~~~~------~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~---~--~~~~~~y~~~~~--~l~~i~~~a 307 (667)
++++++++++ ++|+|||+++|+++++.. +.++++.+ ..... . ...+..|.++.. .++.+..++
T Consensus 158 v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~---~~~~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
T cd08602 158 LLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT---DLPLVQLI-DDATIPPQDTPEGDSRTYADLTTDAGLKEIATYA 233 (309)
T ss_pred HHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh---CCCeEEEe-cCCCCCcccccccCccchhhhcCHHHHHHHHhhc
Confidence 9999999875 389999999999999985 46777633 22211 0 012345554433 466777789
Q ss_pred ceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCC-CCcccCCCCChHHHHHHHHhCCCcccceEecCCC
Q 005970 308 SGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (667)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P 385 (667)
.+++|++..+.|....+.+..++++|+.+|++|++|++||||++ ....++|..|+.++|+.++++| |||||||+|
T Consensus 234 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---VdgiiTD~P 309 (309)
T cd08602 234 DGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFLDAG---VDGLFTDFP 309 (309)
T ss_pred eEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHHHhC---CCEEeCCCC
Confidence 99999988887765555555667899999999999999999987 4677899999999999999887 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. |
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=405.97 Aligned_cols=291 Identities=23% Similarity=0.348 Sum_probs=215.1
Q ss_pred CCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCC
Q 005970 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (667)
Q Consensus 89 ~~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~ 168 (667)
..+|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+|++.+.|+.++++ +|
T Consensus 24 ~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD--~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~~~---~g-- 96 (355)
T PRK11143 24 SAEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARK---DG-- 96 (355)
T ss_pred CCCcEEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEeeeEccCCcEEEeCCchhcccCCccccccccccc---CC--
Confidence 347999999999999999999999999999999 99999999999999999999999999988888776654 22
Q ss_pred CCccccccCCHHhhccccccccccC--------CCCCCC--CCCCccCCHHHHHHhhC--------CCceEEeccCchhh
Q 005970 169 TPGWFSIDYTLNDLSNIILNQGVYS--------RTDKFD--GNGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (667)
Q Consensus 169 ~~g~~v~d~t~~el~~l~~~~~~~~--------~~~~~~--~~~~~iptL~e~l~~~~--------~~~~~ieiK~~~~~ 230 (667)
+++|.+|||+||++|+++.++.. ++..|. ..+++||||+|+|++++ +.+++||||.+.+.
T Consensus 97 --~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~ 174 (355)
T PRK11143 97 --RYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFH 174 (355)
T ss_pred --ceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccc
Confidence 36899999999999999987531 112222 11479999999999885 34799999986544
Q ss_pred hhcCCcHHHHHHHHHhhcCC------ceEecCCHHHHHHHHhhhCCC---CCceEEEeccCCccCC--------CCCcch
Q 005970 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAARFRPS---MTKLVFRFLGKSEIEP--------TTNQTY 293 (667)
Q Consensus 231 ~~~~~~~~~~l~~~l~~~~~------~~i~SFd~~~L~~l~~~~~~~---~~~~~~~l~~~~~~~~--------~~~~~y 293 (667)
...+.++++.++++++++++ ++|+|||+.+|+++++...|. +.++++.+........ ..+..|
T Consensus 175 ~~~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (355)
T PRK11143 175 HQEGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNY 254 (355)
T ss_pred cccchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccch
Confidence 33345688999999999876 489999999999999843231 1466653321110000 011234
Q ss_pred hHHhh--cHHHHHhhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHH-
Q 005970 294 GSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI- 370 (667)
Q Consensus 294 ~~~~~--~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li- 370 (667)
.++.. .+..+..++.++.|.+..+.+.+....+..++++|+++|++|++|++||||++... .|..| ..+|..++
T Consensus 255 ~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~~~--~~~~d-~~~~~~~~~ 331 (355)
T PRK11143 255 DWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQLP--EYATD-VNQLYDILY 331 (355)
T ss_pred hhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEeccccch--hhhcC-hHHHHHHHH
Confidence 43222 35666778999998776554321122244567899999999999999999987322 34334 45565554
Q ss_pred -hCCCcccceEecCCCCCchhhhhh
Q 005970 371 -DNGDFSVDGVLSDFPLTPSAAVDC 394 (667)
Q Consensus 371 -~~G~~gVDGIiTD~P~~~~~~l~~ 394 (667)
++| |||||||+|+++++++.+
T Consensus 332 ~~~G---VDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 332 NQAG---VDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred HccC---CCEEEcCChHHHHHHHhc
Confidence 666 999999999999888743
|
|
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=397.07 Aligned_cols=280 Identities=23% Similarity=0.410 Sum_probs=217.4
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccc-cccccccccccCCCCCC
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ-IFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~-~~~~~~~~~~~~g~~~~ 170 (667)
|+||||||+++.+||||++||+.|+++|+| +||||||+||||++||+||.+|+||||+.+ .|+.+++++ .+..+.+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~-~~~~~~~ 77 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTV-PEIGSTS 77 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCC--EEEEeeeEcCCCCEEEeccccccCcccCCccccccccccc-ccccccC
Confidence 689999999999999999999999999999 999999999999999999999999999876 677777663 3333456
Q ss_pred ccccccCCHHhhccccccc---ccc---CCCCCCCCCCCccCCHHHHHHhhCC---CceEEeccCchhhh-hcCCcHHHH
Q 005970 171 GWFSIDYTLNDLSNIILNQ---GVY---SRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYA-QHNLSMRSF 240 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~---~~~---~~~~~~~~~~~~iptL~e~l~~~~~---~~~~ieiK~~~~~~-~~~~~~~~~ 240 (667)
|+++.||||+||++|+++. |+. .+.+.|.+ +++||||+|+|++++. .+++||||.+.... ..+..+++.
T Consensus 78 ~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 156 (300)
T cd08604 78 GIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKN-AGKFLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDA 156 (300)
T ss_pred ceeeecCcHHHHhhCccCCcCcccccCcCCCcccCC-CCCCCCHHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHH
Confidence 7789999999999999874 221 23455665 5799999999999864 47999999765432 223468899
Q ss_pred HHHHHhhcCC-------ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCC
Q 005970 241 VLSVSRSVVV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (667)
Q Consensus 241 l~~~l~~~~~-------~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~ 313 (667)
++++++++++ ++|+||++.+|+++++.. +.++++ ++.... ..+. ...++.+..++.++++.
T Consensus 157 v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~---~~~~~~-l~~~~~------~~~~--~~~~~~~~~~a~~v~~~ 224 (300)
T cd08604 157 VLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI---SYERVY-VVDETI------RDAS--DSSIEEIKKFADAVVID 224 (300)
T ss_pred HHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc---CCceEE-EecCcc------cccC--hhHHHHHHHhccEEEeC
Confidence 9999998876 389999999999999985 467775 332110 0110 01245666778889988
Q ss_pred CccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCC-CCcccCCCCChHHHHHH-HHhCCCcccceEecCCCCCchhh
Q 005970 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLS-FIDNGDFSVDGVLSDFPLTPSAA 391 (667)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~e~~~-li~~G~~gVDGIiTD~P~~~~~~ 391 (667)
+..+.|... ..+...+.+|+.+|++|++|++||||++ ....++|..|+..++.+ +.++| |||||||+|+++.++
T Consensus 225 ~~~~~~~~~-~~~~~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~G---VdgIiTD~P~~~~~~ 300 (300)
T cd08604 225 RGSVFPVST-SFLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAG---VDGFITEFPATAARY 300 (300)
T ss_pred hhhcccccC-CcccCchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcC---CCEEEecCchhhhcC
Confidence 877765432 2233345899999999999999999987 56788888888766555 55666 999999999988764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-47 Score=399.71 Aligned_cols=278 Identities=26% Similarity=0.356 Sum_probs=209.2
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+.+.++.++.+ +| +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~---~g----~ 71 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRK---DG----R 71 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEeeeeECcCCcEEEeCCchhhccCCccccccccccc---CC----c
Confidence 689999999999999999999999999999 99999999999999999999999999988887777654 22 3
Q ss_pred cccccCCHHhhccccccccccCC--------CCCC---CCCCCccCCHHHHHHhhC--------CCceEEeccCchhhhh
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSR--------TDKF---DGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ 232 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~--------~~~~---~~~~~~iptL~e~l~~~~--------~~~~~ieiK~~~~~~~ 232 (667)
++|.||||+||++|+++.|+..+ +..| .+ +++||||+|+|++++ ..+++||||.+.++.+
T Consensus 72 ~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~ 150 (318)
T cd08600 72 YYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKS-DFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ 150 (318)
T ss_pred eeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCC-CCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh
Confidence 68999999999999999887432 1112 12 469999999999884 4579999997764443
Q ss_pred cCCcHHHHHHHHHhhcCC------ceEecCCHHHHHHHHh-hhCC---CCCceEEEeccCCccCC--------CCCcchh
Q 005970 233 HNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRP---SMTKLVFRFLGKSEIEP--------TTNQTYG 294 (667)
Q Consensus 233 ~~~~~~~~l~~~l~~~~~------~~i~SFd~~~L~~l~~-~~~~---~~~~~~~~l~~~~~~~~--------~~~~~y~ 294 (667)
.+.++++.++++++++++ ++|+||++.+|+++++ .. | .++++++++ ....... ..+..|+
T Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~-p~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
T cd08600 151 EGKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELL-PKMGMDLKLVQLI-AYTDWGETQEKDPGGWVNYDYD 228 (318)
T ss_pred ccccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhC-ccccCCcceEEEe-ccCCCCcccccccCCccccchh
Confidence 445789999999999886 4999999999999997 43 2 046777633 2111111 1123455
Q ss_pred HHhh--cHHHHHhhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHH-HHh
Q 005970 295 SLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS-FID 371 (667)
Q Consensus 295 ~~~~--~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~-li~ 371 (667)
++.. ++..++.+|++++|++..+.+.+.......++++|++||++|+.|++||||++....+. .+....+.. +++
T Consensus 229 ~~~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~--~~~~~~~~~~l~~ 306 (318)
T cd08600 229 WMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPEYA--KDADQLLDALLNK 306 (318)
T ss_pred hhcCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccccc--CCHHHHHHHHHHh
Confidence 5432 46777888999999888765532221223457899999999999999999987422221 222222122 466
Q ss_pred CCCcccceEecCCCC
Q 005970 372 NGDFSVDGVLSDFPL 386 (667)
Q Consensus 372 ~G~~gVDGIiTD~P~ 386 (667)
+| |||||||+|+
T Consensus 307 ~G---VDGiiTD~P~ 318 (318)
T cd08600 307 AG---VDGVFTDFPD 318 (318)
T ss_pred cC---CcEEEcCCCC
Confidence 66 9999999996
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP |
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=398.39 Aligned_cols=291 Identities=16% Similarity=0.158 Sum_probs=220.8
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCC-CCcccccccc--cccccccccccCC
Q 005970 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDL-KLDNASNIAQ--IFKTQQKNYLVNG 166 (667)
Q Consensus 90 ~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~-~l~rtt~~~~--~~~~~~~~~~~~g 166 (667)
..++||||||+++.+||||++||+.|+++||| +||+|||+||||++||+||. +|+||||+.. .|+.++++..++|
T Consensus 15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad--~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g 92 (356)
T cd08560 15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAG--ILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPA 92 (356)
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccc
Confidence 35889999999999999999999999999999 99999999999999999997 8999999986 5888888877777
Q ss_pred CC----CCccccccCCHHhhcccccccccc----------------CCCCCCCCCCCccCCHHHHHHhhC--CCceEEec
Q 005970 167 VP----TPGWFSIDYTLNDLSNIILNQGVY----------------SRTDKFDGNGFQILTVQDMARQIK--PPGLWLNI 224 (667)
Q Consensus 167 ~~----~~g~~v~d~t~~el~~l~~~~~~~----------------~~~~~~~~~~~~iptL~e~l~~~~--~~~~~iei 224 (667)
.. .++|+|.||||+||++|+++.+.. .++..|.+ +++||||+|+|++++ ++++++||
T Consensus 93 ~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~IPTL~Evl~lv~~~~v~l~iEi 171 (356)
T cd08560 93 NATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYAT-CGTLMTHKESIALFKSLGVKMTPEL 171 (356)
T ss_pred ccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccC-CCCCCCHHHHHHHHHhcCceEEEEe
Confidence 65 567899999999999998763210 12334555 579999999999986 47899999
Q ss_pred cCchhhhhc-----CCcHHHHHHHHHhhcCC----ceEecCCHHHHHHHHhhhCCCCCce--EEEeccCCccCCCCCcch
Q 005970 225 QHDAFYAQH-----NLSMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKL--VFRFLGKSEIEPTTNQTY 293 (667)
Q Consensus 225 K~~~~~~~~-----~~~~~~~l~~~l~~~~~----~~i~SFd~~~L~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~~~y 293 (667)
|.+.++... ...+++.++++++++++ ++|||||+..|+++++.. | ..++ ++ +...... . ...+
T Consensus 172 K~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~-p-~~~~~l~~-l~~~~~~-~--~~~~ 245 (356)
T cd08560 172 KSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNE-P-DFGRQAVY-LDDRDDT-A--DFPA 245 (356)
T ss_pred CCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhC-C-CCCeeEEE-EccCCcc-c--cccc
Confidence 987653321 12588899999999875 499999999999998875 3 3433 43 2222110 0 0112
Q ss_pred hHHhhcHHHH-HhhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCC-CCc--c-c---------CCC
Q 005970 294 GSLLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPI--S-F---------NYS 359 (667)
Q Consensus 294 ~~~~~~l~~i-~~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~--~-~---------~~~ 359 (667)
.++ ..++.+ +.++++++|++..+++.+..+. ..++.+|+.||++|++|++|||+++ .+. . + ++.
T Consensus 246 ~~~-~~l~~i~a~~a~~i~P~~~~l~~~~~~~~-~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~ 323 (356)
T cd08560 246 TWS-PSMDELKARGVNIIAPPIWMLVDPDENGK-IVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINND 323 (356)
T ss_pred cHH-HHHHHHHhCCccEecCchhhccccccccc-cCCHHHHHHHHHcCCEEEEEEeecCcccccCccccccccccccccc
Confidence 222 346676 5678999999887765533332 3568899999999999999999876 222 1 1 123
Q ss_pred CChHHHHHHHH-hCCCcccceEecCCCCCchhhhhh
Q 005970 360 YDPLTEYLSFI-DNGDFSVDGVLSDFPLTPSAAVDC 394 (667)
Q Consensus 360 ~d~~~e~~~li-~~G~~gVDGIiTD~P~~~~~~l~~ 394 (667)
.|-..++..++ ++| |||||||+|+++..|.+|
T Consensus 324 ~~~~~~~~~~~~~~G---vDGvftD~p~~~~~~~~~ 356 (356)
T cd08560 324 GDMYNVLDVLARDVG---ILGIFSDWPATVTYYANC 356 (356)
T ss_pred ccHHHHHHHHHHhcC---CCEEEccCCCceeEecCC
Confidence 34457777777 455 999999999999888764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=380.72 Aligned_cols=240 Identities=23% Similarity=0.324 Sum_probs=206.6
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCC--CeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccccc-ccccCC
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGV--DFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIP-EIMAGS 484 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Ga--d~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~-~~~~~~ 484 (667)
|+||||||++|.+||||++||+.|+++|| |+||||||+||||++||+||.+|+|+||++.. |++|++++. ||...+
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~-F~~r~~t~~idG~~~~ 79 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARV-YPKRKKTYSVNGVSTK 79 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccc-cccccccccccccccC
Confidence 57999999999999999999999999999 47999999999999999999999999998774 999998854 898889
Q ss_pred CcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHH
Q 005970 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (667)
Q Consensus 485 g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (667)
|+++.|+||+||++|++....+ .+++.|.|..+||||+|+|++++.. ++++|||.+.++. ..|..+++.
T Consensus 80 g~~~~d~TlaELk~L~~~~~~~------~r~~~~~g~~~IpTLeEvl~~~~~~----gi~i~ie~~~~~~-~~gl~~~~~ 148 (299)
T cd08603 80 GWFSVDFTLAELQQVTLIQGIF------SRTPIFDGQYPISTVEDVVTLAKPE----GLWLNVQHDAFYQ-QHNLSMSSY 148 (299)
T ss_pred CceeccCCHHHHhhCCCCCCcc------cCCcccCCcCCCCCHHHHHHHhHhc----CeEEEEecHHHHH-HcCCCHHHH
Confidence 9889999999999999875332 2567888766999999999999864 7999999999876 578899999
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc---cCCcEEE-Eecc---------chhhhhHHHHHHHHHhhhhcCC
Q 005970 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVY-KVKE---------NIRDALNQTIEDIKKFADSVVL 631 (667)
Q Consensus 565 v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~---p~~~~~~-L~~~---------~~~~~~~~~l~~~~~~a~~i~~ 631 (667)
|+++|++++ .++||||+...|+++++. +++++++ +.+. .|+++.. .++++++||++|||
T Consensus 149 l~~~L~~~~-------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~-~L~eIa~yAdgig~ 220 (299)
T cd08603 149 LLSLSKTVK-------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK-NLTFIKTFASGILV 220 (299)
T ss_pred HHHHHHHcC-------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH-hHHHHHHHHhhcCC
Confidence 999999874 489999999999999975 5788886 5543 1233332 68999999999999
Q ss_pred C-eeEEeCCC---CCccHHHHHHHHHcCCcEEEEeccCCC
Q 005970 632 T-MSLYLKRG---TSSQTQLWRSTHITRELVLMELLQNSL 667 (667)
Q Consensus 632 ~-~~i~~~~~---~~~~~~~v~~ah~~Gl~V~vWTVn~e~ 667 (667)
+ ..+.|... +...+.+|+.||++||.||+||+++|+
T Consensus 221 ~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~ 260 (299)
T cd08603 221 PKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDF 260 (299)
T ss_pred ChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCC
Confidence 9 78887642 445578999999999999999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=385.34 Aligned_cols=258 Identities=60% Similarity=0.909 Sum_probs=203.0
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
|+||||||+++.+||||++||++|+++|||+||||||+||||++||+||.+|+|+||.....|++|+++.++....+|++
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVPEIGSTSGIF 80 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccccccccCcee
Confidence 57999999999999999999999999999999999999999999999999999999987656999988877666567766
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
+.++||+||++|+++..++|...+..+.+.|.++++||||+|+|+.++.... ++++||||.+....+..+..+++++++
T Consensus 81 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~~-~~l~iEiK~~~~~~~~~~~~~~~~v~~ 159 (300)
T cd08604 81 TFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKSL-SGVLINVENAAYLAEKKGLDVVDAVLD 159 (300)
T ss_pred eecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcCC-ceEEEEeeccchhhhccCccHHHHHHH
Confidence 9999999999999975433221123355667766899999999999987522 379999997654321123468999999
Q ss_pred HHHhcCCCCCCCceEEEEeCCHHHHHHHHhccCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCC-eeEEeCCC--CCcc
Q 005970 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLT-MSLYLKRG--TSSQ 644 (667)
Q Consensus 568 ~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~-~~i~~~~~--~~~~ 644 (667)
+|+++++.....++++|+||++++|++++++.+++++++++....+.....+.++..+|++++++ ..+.+... +...
T Consensus 160 ~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~ 239 (300)
T cd08604 160 ALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQ 239 (300)
T ss_pred HHHHcCCCCCCCCeEEEEcCCHHHHHHHHhccCCceEEEecCcccccChhHHHHHHHhccEEEeChhhcccccCCcccCc
Confidence 99999985311148999999999999999998889999987433233333455666677777776 44433221 2234
Q ss_pred HHHHHHHHHcCCcEEEEeccCC
Q 005970 645 TQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 645 ~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
+++|+++|++|++|++||||++
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~ 261 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNE 261 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCC
Confidence 5899999999999999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=382.70 Aligned_cols=254 Identities=47% Similarity=0.703 Sum_probs=200.1
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccc-ccccccCCCc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTT-IPEIMAGSGI 486 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~-~~~~~~~~g~ 486 (667)
|+||||||+++.+||||++||++|+++|||+||||||+||||++||+||.+|+|+||+... |+.|+.+ ..++.+++|+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~-~~~~~~~~~~~~~~~~g~ 79 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV-FPKRKKTYVVEGQSTSGI 79 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCcccccc-cccccceecccCcccCCe
Confidence 5799999999999999999999999999999999999999999999999999999996643 6666554 5566678887
Q ss_pred ccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHH
Q 005970 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (667)
Q Consensus 487 ~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (667)
+|.++||+||++|+++....+. ...+++.|.++++||||+|+|++++..+ .++++||||.+.+.....+.++++.++
T Consensus 80 ~v~d~T~aeL~~l~~~~~~~~~--~~~~~~~~~~~~~IptL~evl~~~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~v~ 156 (302)
T cd08571 80 FSFDLTWAEIQTLKPIISNPFS--VLFRNPRNDNAGKILTLEDFLTLAKPKS-LSGVWINVENAAFLAEHKGLLSVDAVL 156 (302)
T ss_pred eeeeCCHHHHhhCcccccCccc--ccCCCcccCCCCCcCCHHHHHHhhhccC-CceEEEEccCchhhhhhccccHHHHHH
Confidence 7999999999999986432210 0124556666679999999999998752 237999999866432112346889999
Q ss_pred HHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc---cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCC-eeEEeCC---
Q 005970 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVLT-MSLYLKR--- 639 (667)
Q Consensus 567 ~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~---p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~-~~i~~~~--- 639 (667)
++|+++++... .++++|+|||+++|++++++ |.++++++++....+.....+.++..||.+++++ ..+.+..
T Consensus 157 ~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~~~~~ 235 (302)
T cd08571 157 TSLSKAGYDQT-AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDS 235 (302)
T ss_pred HHHHHcCCCCC-CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHeeecCCCC
Confidence 99999988521 15899999999999999997 7888888876422112234566777889988887 5555421
Q ss_pred CCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 640 GTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 640 ~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.....+++|+++|++|++|++||||++
T Consensus 236 ~~~~~~~~V~~ah~~Gl~V~~wTvn~~ 262 (302)
T cd08571 236 FLTPQTSVVQDAHKAGLEVYVSGFANE 262 (302)
T ss_pred cccCccHHHHHHHHcCCEEEEEEEecC
Confidence 133346899999999999999999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv |
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=382.58 Aligned_cols=274 Identities=30% Similarity=0.402 Sum_probs=203.1
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|+||+...++.. |....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~ 71 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTG 71 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCC--EEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCC
Confidence 689999999999999999999999999999 99999999999999999999999999976544432 334455
Q ss_pred cccccCCHHhhccccccccccC----CCCCCCCCCCccCCHHHHHHhhCC--------CceEEeccCchhhhhcCCcHHH
Q 005970 172 WFSIDYTLNDLSNIILNQGVYS----RTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRS 239 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~----~~~~~~~~~~~iptL~e~l~~~~~--------~~~~ieiK~~~~~~~~~~~~~~ 239 (667)
+.|.++||+||++++++.|+.. +.+.+.. +++||||+|+|++++. .+++||||.+.........+++
T Consensus 72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~ 150 (296)
T cd08559 72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYG-GFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEE 150 (296)
T ss_pred eeeecCcHHHHhcCCCCCcccccccccCccccC-CCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHH
Confidence 6899999999999999977522 1111222 4699999999999854 5799999976543333457889
Q ss_pred HHHHHHhhcCC------ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhh--cHHHHHhhcceec
Q 005970 240 FVLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK--NLTFIKTFASGIL 311 (667)
Q Consensus 240 ~l~~~l~~~~~------~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~--~l~~i~~~a~~i~ 311 (667)
.++++++++++ ++|+||++.+|+++++.. | +.++++.+.............|.++.. .+..++.++.+++
T Consensus 151 ~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~-p-~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 151 KLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNET-P-DIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhC-C-CCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999999864 489999999999999986 3 678886432211100001122333321 3445555677888
Q ss_pred CCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCC-CCcccCCCCChHHHHHHHHhC-CCcccceEecCCC
Q 005970 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN-GDFSVDGVLSDFP 385 (667)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~e~~~li~~-G~~gVDGIiTD~P 385 (667)
+.+..+..... .....++.+|+.+|++|++|++||||++ .+..+ +..++|.+++++ | |||||||+|
T Consensus 229 ~~~~~~~~~~~-~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~----~~~~~~~~l~~~~G---VdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPEDS-NGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAP----DFKQDMDALYNAAG---VDGVFTDFP 296 (296)
T ss_pred CCHHhcccccc-ccccCchHHHHHHHHcCCEEEEEEecCccccccc----ccccCHHHHHHHhC---CCEEEcCCC
Confidence 87665542211 1123347899999999999999999975 22222 224678999987 7 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), |
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=373.97 Aligned_cols=252 Identities=27% Similarity=0.367 Sum_probs=199.9
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCc-cCCcccc-ccccccCCC
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK-FNSITTT-IPEIMAGSG 485 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~-~~~~~~~-~~~~~~~~g 485 (667)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+...+ |++|+++ ..++.+..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 57999999999999999999999999999999999999999999999999999999986654 8888765 234444566
Q ss_pred cccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcC----CcceEEEEeecchhhhhhhcccH
Q 005970 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSV 561 (667)
Q Consensus 486 ~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~ 561 (667)
.+|.++|++||++|+++.+++. +++.|.+.++||||+|+|++++..+ +.++++||||.+.......+..+
T Consensus 81 ~~v~d~t~~eL~~l~~~~~~~~------~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 154 (309)
T cd08602 81 WFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPM 154 (309)
T ss_pred eeeccCCHHHHhhCccCCcCcc------cCcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCH
Confidence 5699999999999999876532 2345666579999999999998642 12589999997654321134579
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhccCCcEEEEeccchh---h------------hhHHHHHHHHHhh
Q 005970 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR---D------------ALNQTIEDIKKFA 626 (667)
Q Consensus 562 ~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~p~~~~~~L~~~~~~---~------------~~~~~l~~~~~~a 626 (667)
+++|+++|+++++... .++++|+|||+++|++++++.++++++|++.... + ..+..++++..++
T Consensus 155 ~~~v~~~l~~~~~~~~-~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
T cd08602 155 EDKLLETLKKYGYTGK-KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYA 233 (309)
T ss_pred HHHHHHHHHHcCCCCC-CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhc
Confidence 9999999999998631 1489999999999999999878899999864211 0 2234556666788
Q ss_pred hhcCCC-eeEEeCCC---CCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 627 DSVVLT-MSLYLKRG---TSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 627 ~~i~~~-~~i~~~~~---~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
++++++ ..+.+... ...++++|+++|++|++|++||||++
T Consensus 234 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~ 277 (309)
T cd08602 234 DGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNE 277 (309)
T ss_pred eEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCC
Confidence 888887 55554321 33456999999999999999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. |
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=369.30 Aligned_cols=244 Identities=18% Similarity=0.187 Sum_probs=177.8
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+||+.
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~l~R~t~~~------------------- 59 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGAD--AIWLTVQLSKDGVPVLYRPSDLKSLTNGS------------------- 59 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeEECCCCCEEEeCCCchhcccCCC-------------------
Confidence 689999999999999999999999999999 99999999999999999999999999943
Q ss_pred cccccCCHHhhccccccccccCC-CCCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSR-TDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~-~~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (667)
+.|.++||+||++|+++.|+... +..|.+.+++||||+|+|+++++..++||+|.+.. ..+++.++++++++++
T Consensus 60 g~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i~~~~~ 134 (263)
T cd08580 60 GAVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPDTPFILDMKSLPA-----DPQAKAVARVLERENA 134 (263)
T ss_pred CChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcCCeEEEEECCCCc-----HHHHHHHHHHHHhcCC
Confidence 27999999999999999887422 22355545689999999999988889999996531 1577889999999876
Q ss_pred c---eEecCCHHHHHHHHhhhCCCC-------CceEEEeccCCccCC-C-CCcchhH-----HhhcHHHHHhhcceecCC
Q 005970 251 N---YISSPEVNFLRSIAARFRPSM-------TKLVFRFLGKSEIEP-T-TNQTYGS-----LLKNLTFIKTFASGILVP 313 (667)
Q Consensus 251 ~---~i~SFd~~~L~~l~~~~~~~~-------~~~~~~l~~~~~~~~-~-~~~~y~~-----~~~~l~~i~~~a~~i~~~ 313 (667)
. +++|||+..|+++++.. | + .... ++....... . ....... +...+.....++.+.
T Consensus 135 ~~~v~v~SF~~~~l~~~~~~~-p-~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 207 (263)
T cd08580 135 WSRVRIYSTNADYQDALAPYP-Q-ARLFESRDVTRT--RLANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTLGE--- 207 (263)
T ss_pred CCCEEEEECCHHHHHHHHhcC-c-ccccccHHHHHH--HHHhhhcccccccCccchhhccccccccchheeeecccc---
Confidence 3 99999999999999884 2 1 1111 111000000 0 0000000 000011111111111
Q ss_pred CccccccCCCCCCCCChHHHHHHHHc-CCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCc
Q 005970 314 KDYIWPVDESLYLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (667)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~ 388 (667)
....+ .+...++++|+.+|++ |++|++||||++ ++|++++++| |||||||+|+.+
T Consensus 208 -~~~~~----~~~l~t~~~V~~~h~~~gl~V~~WTVN~~------------~~~~~l~~~G---VDgIiTD~P~~~ 263 (263)
T cd08580 208 -GRSPV----QATLWTPAAVDCFRRNSKVKIVLFGINTA------------DDYRLAKCLG---ADAVMVDSPAAM 263 (263)
T ss_pred -ccccc----ccccCCHHHHHHHHhcCCcEEEEEEeCCH------------HHHHHHHHcC---CCEEEeCCcccC
Confidence 11111 0122357899999999 999999999754 7899999888 999999999863
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. |
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=368.30 Aligned_cols=252 Identities=12% Similarity=0.046 Sum_probs=187.0
Q ss_pred ccccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccc
Q 005970 84 WQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (667)
Q Consensus 84 ~~~~~~~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~ 163 (667)
.+..-..+|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+.++.+..
T Consensus 15 ~~~~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~~~--- 89 (316)
T cd08610 15 EKETLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAH--GLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPESAC--- 89 (316)
T ss_pred cccccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEeCCCccccccCCCCccccccc---
Confidence 44444567899999999999999999999999999999 9999999999999999999999999997665554432
Q ss_pred cCCCCCCccccccCCHHhhccccccccccCCC-------------CCCCCCCCccCCHHHHHHhhCC--CceEEeccCch
Q 005970 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT-------------DKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDA 228 (667)
Q Consensus 164 ~~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~-------------~~~~~~~~~iptL~e~l~~~~~--~~~~ieiK~~~ 228 (667)
+.|.++||+||++++++.||.... ..+.+ ++||||+|+|+++++ ..++||||.+.
T Consensus 90 --------~~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~--e~IPTLeEvL~~~~~~~~~l~IEIK~~~ 159 (316)
T cd08610 90 --------ENPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN--QSIPKLSNFLRLAEKENKLVIFDLYRPP 159 (316)
T ss_pred --------cchhhCCHHHHhhCCCCCccCcccccccccccccccccccCC--CCCCCHHHHHHHhHhcCceEEEEeCCCc
Confidence 269999999999999998873210 12334 699999999999964 56899999542
Q ss_pred hhhhcCCcHHHHHHHHH-hhcCCc--eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh
Q 005970 229 FYAQHNLSMRSFVLSVS-RSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT 305 (667)
Q Consensus 229 ~~~~~~~~~~~~l~~~l-~~~~~~--~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~ 305 (667)
........+++.++..+ +++++. ++.||+...++++++.. | +.+..+.. .. . +..+..
T Consensus 160 ~~~~~~~~~~~~v~~~i~~~~~~~~~~v~sf~~~~l~~~~~~~-P-~~~~~l~~--~~--------~-------~~~l~~ 220 (316)
T cd08610 160 PKHPYRHTWIRRVLEVILNEVGIEQHLVLWLPAHDRQYVQSVA-P-GFKQHVGR--KV--------P-------IETLLK 220 (316)
T ss_pred ccCcchhHHHHHHHHHHHHHcCCCCCEEEEcCHHHHHHHHHHC-c-chhhhhcc--cc--------c-------HHHHHH
Confidence 11111123566777775 566653 55679999999999885 3 34432100 00 0 112221
Q ss_pred -hcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCC
Q 005970 306 -FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (667)
Q Consensus 306 -~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~ 384 (667)
.+.++++.+..+ ++++|+++|++|++|++||||+. ++|++++++| |||||||+
T Consensus 221 ~~~~~l~~~~~~l-----------~~~~v~~a~~~Gl~V~vWTVNd~------------~~~~~l~~~G---VDgIiTD~ 274 (316)
T cd08610 221 NNISILNLAYKKL-----------FSNDIRDYKAANIHTNVYVINEP------------WLFSLAWCSG---IHSVTTNN 274 (316)
T ss_pred cCCeEEccchhhC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhCC---cCEEEeCC
Confidence 244455443222 46799999999999999999753 7899999888 99999999
Q ss_pred CCCchhhhhhh
Q 005970 385 PLTPSAAVDCF 395 (667)
Q Consensus 385 P~~~~~~l~~~ 395 (667)
|+.+.++.+..
T Consensus 275 P~~l~~~~~~~ 285 (316)
T cd08610 275 IHLLKQLDHPH 285 (316)
T ss_pred HHHHHHhhchh
Confidence 99886655443
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. |
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=370.08 Aligned_cols=258 Identities=15% Similarity=0.194 Sum_probs=193.4
Q ss_pred cCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccC-cccccccCCCCc-cCCcccc-cccc
Q 005970 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI-NLINSTNAAQSK-FNSITTT-IPEI 480 (667)
Q Consensus 404 ~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~-~L~r~t~v~~~~-~~~~~~~-~~~~ 480 (667)
..+.++||||||+++.+||||++||++|+++|||+||+|||+||||++||+||. +|+||||+...| |++|+++ ..++
T Consensus 13 ~~~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g 92 (356)
T cd08560 13 FRKTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPA 92 (356)
T ss_pred CCCCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccc
Confidence 346789999999999999999999999999999999999999999999999997 899999998876 9888765 2233
Q ss_pred cc----CCCcccccCCHHHHcccCCCcc--CCcc--------cccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEE
Q 005970 481 MA----GSGIFSFSLIWDEIQTLIPQIS--NPYF--------KFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLIS 546 (667)
Q Consensus 481 ~~----~~g~~i~d~t~~EL~~L~~~~~--~p~~--------~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iE 546 (667)
.. ..+++|.|+||+||++|+++.. .++. .+...++..|.++++||||+|+|+++++.+ ++++||
T Consensus 93 ~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~~--v~l~iE 170 (356)
T cd08560 93 NATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSLG--VKMTPE 170 (356)
T ss_pred ccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhcC--ceEEEE
Confidence 32 2234699999999999987531 1100 000123445555689999999999998752 589999
Q ss_pred eecchhhhhhhc----ccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcE--EEEeccc----hhhhh
Q 005970 547 IENAVYLAEKQG----MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYEL--VYKVKEN----IRDAL 615 (667)
Q Consensus 547 iK~~~~~~~~~~----~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~--~~L~~~~----~~~~~ 615 (667)
||.+.+.....+ ..++++++++++++++.. ++|+|||||++.|+++++. |++++ +++.+.. .....
T Consensus 171 iK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~~~~~~~~~ 247 (356)
T cd08560 171 LKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDDTADFPATW 247 (356)
T ss_pred eCCCcccccccccccHHHHHHHHHHHHHHcCCCC---CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCccccccccH
Confidence 998765221011 258899999999999862 5899999999999999998 98765 5544421 00011
Q ss_pred HHHHHHH-HHhhhhcCCC-eeEEeCC--CCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 616 NQTIEDI-KKFADSVVLT-MSLYLKR--GTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 616 ~~~l~~~-~~~a~~i~~~-~~i~~~~--~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
...++++ ..+++.++|+ ..+.+.. ....++++|+.||++|++|++|||+++
T Consensus 248 ~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~~ 302 (356)
T cd08560 248 SPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLERS 302 (356)
T ss_pred HHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeecC
Confidence 2345555 5567788887 4444321 122467999999999999999999864
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=358.22 Aligned_cols=239 Identities=23% Similarity=0.290 Sum_probs=186.4
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCcc
Q 005970 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (667)
Q Consensus 93 ~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~ 172 (667)
+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.. + +
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d--~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~-----------~------g 62 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGAD--YIELDLQMTKDGVLVAMHDETLDRTTNIER-----------P------G 62 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCC--EEEEEeeECCCCeEEEeCCCccccccCCCC-----------C------c
Confidence 58999999999999999999999999999 999999999999999999999999998510 0 3
Q ss_pred ccccCCHHhhccccccccccCC-----CCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHHHHh
Q 005970 173 FSIDYTLNDLSNIILNQGVYSR-----TDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSR 246 (667)
Q Consensus 173 ~v~d~t~~el~~l~~~~~~~~~-----~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~~l~ 246 (667)
.|+++||+||++++++.++... +..+. +++||||+|+|+++++ .+++||+|.+... ..+++.+.++++
T Consensus 63 ~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~~l~IEiK~~~~~----~~~~~~v~~~l~ 136 (256)
T cd08601 63 PVKDYTLAEIKQLDAGSWFNKAYPEYARESYS--GLKVPTLEEVIERYGGRANYYIETKSPDLY----PGMEEKLLATLD 136 (256)
T ss_pred eeecCcHHHHHhcCCCccccccCccccccccC--CccCCCHHHHHHHhccCceEEEEeeCCCCC----CCHHHHHHHHHH
Confidence 7999999999999998775321 11233 3699999999999864 7899999965322 257788999999
Q ss_pred hcCC---------ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccc
Q 005970 247 SVVV---------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYI 317 (667)
Q Consensus 247 ~~~~---------~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~ 317 (667)
++++ ++++||++..|+++++.. | +.++++.+..... ...... .+..+..++.++++.+..
T Consensus 137 ~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~-p-~~~~~~l~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~- 205 (256)
T cd08601 137 KYGLLTDNLKNGQVIIQSFSKESLKKLHQLN-P-NIPLVQLLWYGEG-----AETYDK---WLDEIKEYAIGIGPSIAD- 205 (256)
T ss_pred HcCCCcccCCCCCEEEecCCHHHHHHHHHhC-C-CCcEEEEeccCcc-----cccchh---HHHHHHhcCeEeCCchhh-
Confidence 8854 489999999999999986 3 5777763322110 000111 133344456666654322
Q ss_pred cccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhh
Q 005970 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 318 ~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l 392 (667)
..+++++.+|++|++|++||||+ .++|++++++| |||||||+|+.+++++
T Consensus 206 ----------~~~~~v~~~~~~g~~v~~wTvn~------------~~~~~~l~~~G---vd~IiTD~p~~~~~~~ 255 (256)
T cd08601 206 ----------ADPWMVHLIHKKGLLVHPYTVNE------------KADMIRLINWG---VDGMFTNYPDRLKEVL 255 (256)
T ss_pred ----------cCHHHHHHHHHCCCEEEEEecCC------------HHHHHHHHhcC---CCEEEeCCHHHHHHhh
Confidence 14679999999999999999975 38899999887 9999999999887765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=355.68 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=176.4
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (667)
+|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+.+|.+..
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~~---------- 68 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVY--GLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERAH---------- 68 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEccCCcEEEeCCCcccccCCCCcccccccc----------
Confidence 4789999999999999999999999999999 9999999999999999999999999997654443321
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCC
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNL 235 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~~~~-------------~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~ 235 (667)
+.|.++||+||++|+++.||....+ .|.+ ++||||+|+|++++ +..++||||.+........
T Consensus 69 -~~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~--~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~ 145 (252)
T cd08574 69 -ERASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN--QSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQ 145 (252)
T ss_pred -cchhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC--CCCCCHHHHHHHHHHcCCeEEEEecCCcccCccHH
Confidence 2689999999999999998743222 3444 69999999999996 3679999996431111122
Q ss_pred cHHHHHHHHHhhcCCc---eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceec
Q 005970 236 SMRSFVLSVSRSVVVN---YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGIL 311 (667)
Q Consensus 236 ~~~~~l~~~l~~~~~~---~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~ 311 (667)
.+++.++++++++++. +++||+.. ++++++.. | +.++.+ + ... . ...+.. .+..++
T Consensus 146 ~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~-p-~~~~~~-~-~~~--------~-------~~~~~~~~~~~~~ 205 (252)
T cd08574 146 SYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVA-P-GFQQVS-G-RKL--------P-------VESLRENGISRLN 205 (252)
T ss_pred HHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHC-C-CCeEee-c-ccc--------c-------hHHHHhcCCeEEc
Confidence 4778899999998863 56566654 78898885 3 455543 1 111 0 111111 244555
Q ss_pred CCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecC
Q 005970 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (667)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD 383 (667)
+.+..+ ++.+|+.+|++|++|++||||+. .+|++++++| |||||||
T Consensus 206 ~~~~~~-----------~~~~v~~~~~~g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD 251 (252)
T cd08574 206 LEYSQL-----------SAQEIREYSKANISVNLYVVNEP------------WLYSLLWCSG---VQSVTTN 251 (252)
T ss_pred cCcccC-----------CHHHHHHHHHCCCEEEEEccCCH------------HHHHHHHHcC---CCEEecC
Confidence 543322 46799999999999999999753 7899999887 9999999
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=365.97 Aligned_cols=251 Identities=23% Similarity=0.270 Sum_probs=189.6
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+.. .|++|++. .+.+ +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~-~~~~~~~~-----~g~~-~ 73 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE-KFPDRKRK-----DGRY-Y 73 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCccc-cccccccc-----CCce-e
Confidence 579999999999999999999999999999999999999999999999999999999653 25555432 1344 4
Q ss_pred cccCCHHHHcccCCCccCCcc-cccc----cCCCCCCCCccccCHHHHHHHHHhcC----CcceEEEEeecchhhhhhhc
Q 005970 488 SFSLIWDEIQTLIPQISNPYF-KFKL----FRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQG 558 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~-~~~~----~~~~~~~~~~~iPtL~EvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~ 558 (667)
|.++||+||++|+++.++... +.+. .+.+.+.++++||||+|+|++++... ..++++||||.+.... ..+
T Consensus 74 v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~-~~~ 152 (318)
T cd08600 74 VIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHH-QEG 152 (318)
T ss_pred EeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhh-hcc
Confidence 999999999999999764210 0000 00111123479999999999997621 1257999999765321 123
Q ss_pred ccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHh-c-c----CCcEEEEecc-chhh-----------------h
Q 005970 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-T----SYELVYKVKE-NIRD-----------------A 614 (667)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~-~-p----~~~~~~L~~~-~~~~-----------------~ 614 (667)
.++++.++++|+++++... .++|+|+||++++|+++|+ + | ++++++|+.. .+.. .
T Consensus 153 ~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T cd08600 153 KDIAAATLEVLKKYGYTSK-NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWMF 231 (318)
T ss_pred ccHHHHHHHHHHHcCCCCC-CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhhc
Confidence 4699999999999998631 1589999999999999997 7 9 9999999852 1110 0
Q ss_pred hHHHHHHHHHhhhhcCCC-eeEEeCC---CCCccHHHHHHHHHcCCcEEEEeccCCC
Q 005970 615 LNQTIEDIKKFADSVVLT-MSLYLKR---GTSSQTQLWRSTHITRELVLMELLQNSL 667 (667)
Q Consensus 615 ~~~~l~~~~~~a~~i~~~-~~i~~~~---~~~~~~~~v~~ah~~Gl~V~vWTVn~e~ 667 (667)
+...+.++..+|+.++++ ..+.+.. ....++++|+.+|++|+.|++||||++.
T Consensus 232 ~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~ 288 (318)
T cd08600 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDA 288 (318)
T ss_pred CHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCc
Confidence 223466777889998888 4443311 1224568999999999999999999973
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP |
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=363.33 Aligned_cols=248 Identities=26% Similarity=0.304 Sum_probs=182.7
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||.... ++.+ +....+..
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~-~~~~------~~~~~~~~ 73 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEH-FPFR------GRKDTGYF 73 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccc-cccc------ccCCCCee
Confidence 5799999999999999999999999999999999999999999999999999999984321 1110 11122235
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcC----CcceEEEEeecchhhhhhhcccHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSVTN 563 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~ 563 (667)
|.++||+||++|+++.++.-. + ..+.+.+..+++||||+|+|+.++..+ +.++++||||.+.... ..+..+++
T Consensus 74 v~~~t~~eL~~l~~~~~~~~~-~-~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~-~~~~~~~~ 150 (296)
T cd08559 74 VIDFTLAELKTLRAGSWFNQR-Y-PERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHK-QEGPDIEE 150 (296)
T ss_pred eecCcHHHHhcCCCCCccccc-c-cccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhh-hcCCCHHH
Confidence 999999999999998653100 0 011222233589999999999998732 1258999999765421 12357899
Q ss_pred HHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhh-----------hhHHHHHHHHHhhhhcCC
Q 005970 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD-----------ALNQTIEDIKKFADSVVL 631 (667)
Q Consensus 564 ~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~-----------~~~~~l~~~~~~a~~i~~ 631 (667)
.|+++|+++++... .++++|+|||+++|+++|++ |++++++|+...... .....+..+..++..+++
T Consensus 151 ~v~~~l~~~~~~~~-~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (296)
T cd08559 151 KLLEVLKKYGYTGK-NDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIGP 229 (296)
T ss_pred HHHHHHHHcCCCCC-CCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhCC
Confidence 99999999987521 15899999999999999999 999999998642110 122334455556777777
Q ss_pred C-eeEEeCC--CCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 632 T-MSLYLKR--GTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 632 ~-~~i~~~~--~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
. ..+.... ....++++|+++|++|++|++||||+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~ 267 (296)
T cd08559 230 WKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNE 267 (296)
T ss_pred CHHhccccccccccCchHHHHHHHHcCCEEEEEEecCc
Confidence 6 3332110 112336999999999999999999983
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), |
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=362.10 Aligned_cols=244 Identities=12% Similarity=0.107 Sum_probs=183.8
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (667)
.|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+.++...
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~~~~~~----------- 92 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVV--VFETDVMVSKDGVPFLMHDEGLLRTTNVKDVFPGRD----------- 92 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEeCCCcccccCCCCCCccccc-----------
Confidence 4799999999999999999999999999999 999999999999999999999999999654221110
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCCccCCHHHHHHhhCC--CceEEeccCchhhhhcCC
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~~~~-------------~~~~~~~~iptL~e~l~~~~~--~~~~ieiK~~~~~~~~~~ 235 (667)
.+.|.++||+||++++++.||..+.+ .+. +++||||+|+|+++++ ..++||||.+........
T Consensus 93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~--ge~IPTL~EvL~~~~~~~~~l~IEIK~~~~~~~~~~ 170 (315)
T cd08609 93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREAD--NQTVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYS 170 (315)
T ss_pred cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccC--CCCCCCHHHHHHHHHhcCCEEEEEeCCCCCCCccHH
Confidence 12599999999999999988743211 123 3699999999999864 569999995421111123
Q ss_pred cHHHHHHHHHhhcCCc--eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCC
Q 005970 236 SMRSFVLSVSRSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (667)
Q Consensus 236 ~~~~~l~~~l~~~~~~--~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~ 313 (667)
.+...++++++++++. .+.+|+...++.+++.. | +.+.++.. . .......+..+++.
T Consensus 171 ~f~~~vl~~i~~~~~~~~~v~~~~~~~l~~~~~~~-P-~~~~~~~~---~----------------~~~~~~~~~~i~~~ 229 (315)
T cd08609 171 SFVFYTLETILKLGIPPDKVWWLPDEYRHDVMKME-P-GFKQVYGR---Q----------------KEMLMDGGNFMNLP 229 (315)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeCHHHHHHHHHhC-c-Cceeeccc---c----------------hhhHhcCCeEEecc
Confidence 5678889999999853 33456788999999885 2 45544211 0 00011124444443
Q ss_pred CccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhh
Q 005970 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (667)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~ 393 (667)
+..+ +.++|+.+|++|++|++||||++ ++|++++++| |||||||+|+.+.+.++
T Consensus 230 ~~~l-----------~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P~~l~~~~~ 283 (315)
T cd08609 230 YQDL-----------SALEIKELRKDNVSVNLWVVNEP------------WLFSLLWCSG---VSSVTTNACQLLKDMSK 283 (315)
T ss_pred cccC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhcC---CCEEEcCCHHHHHHhhh
Confidence 3221 46799999999999999999753 7899999888 99999999998888876
Q ss_pred hhh
Q 005970 394 CFA 396 (667)
Q Consensus 394 ~~~ 396 (667)
.+.
T Consensus 284 ~~~ 286 (315)
T cd08609 284 PIW 286 (315)
T ss_pred hhh
Confidence 653
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia |
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=351.77 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=174.1
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (667)
.|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 7 ~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d--~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~------------------ 66 (249)
T PRK09454 7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHR--MIEFDAKLSADGEIFLLHDDTLERTSNGW------------------ 66 (249)
T ss_pred CCeEEECCCCCCCCChHHHHHHHHHHHcCCC--EEEEEeeECCCCCEEEECCCcccccCCCC------------------
Confidence 5899999999999999999999999999999 99999999999999999999999999953
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
+.|.++||+||++++++.++ ...|.+ ++||||+|+|++++ +..++||+|...... ......+..+++..
T Consensus 67 -~~v~~~t~~el~~l~~~~~~---~~~~~~--~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~ 137 (249)
T PRK09454 67 -GVAGELTWQDLAQLDAGSWF---SAAFAG--EPLPTLSQVAARCRAHGMAANIEIKPTTGRE---AETGRVVALAARAL 137 (249)
T ss_pred -CchhhCCHHHHHhcCCCCcc---CCCCCC--CcCCCHHHHHHHHHhcCCEEEEEECCCCCcc---hhHHHHHHHHHHHH
Confidence 27999999999999998875 344555 69999999999985 467899999432111 11222233333322
Q ss_pred -----CCceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhh-cceecCCCccccccCC
Q 005970 249 -----VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDE 322 (667)
Q Consensus 249 -----~~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~~~~~~~ 322 (667)
+..+++||++..|+++++.. | +.++.+.. ... +..+ ...+.+. +..+++.+..
T Consensus 138 ~~~~~~~v~v~SF~~~~l~~l~~~~-p-~~~~~~l~-~~~------~~~~------~~~~~~~~~~~~~~~~~~------ 196 (249)
T PRK09454 138 WAGAAVPPLLSSFSEDALEAARQAA-P-ELPRGLLL-DEW------PDDW------LELTRRLGCVSLHLNHKL------ 196 (249)
T ss_pred hcCCCCCEEEEeCCHHHHHHHHHhC-C-CCcEEEEe-ccc------cccH------HHHHHhcCCeEEeccccc------
Confidence 23589999999999999986 3 57777533 111 0111 1111111 2233433221
Q ss_pred CCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhh
Q 005970 323 SLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (667)
Q Consensus 323 ~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~ 391 (667)
.++.+++.+|++|++|++||||++ .+|++++++| |||||||+|+.+...
T Consensus 197 -----~~~~~v~~~~~~g~~v~~WTvn~~------------~~~~~l~~~G---VdgIiTD~p~~~~~~ 245 (249)
T PRK09454 197 -----LDEARVAALKAAGLRILVYTVNDP------------ARARELLRWG---VDCICTDRIDLIGPD 245 (249)
T ss_pred -----CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCChHhcCcc
Confidence 257899999999999999999753 7899999888 999999999976544
|
|
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=365.50 Aligned_cols=242 Identities=13% Similarity=0.105 Sum_probs=181.1
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (667)
+|+||||||+++.+||||++||++|++.||| +||+|||+||||++||+||.+|+||||+.+.++.++..
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD--~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~v~~~~~~--------- 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVY--GLQADVTISLDGVPFLMHDRTLRRTTNVDRVFPERQYE--------- 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccccCCCCcccccccc---------
Confidence 4789999999999999999999999999999 99999999999999999999999999977655544322
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCCccCCHHHHHHhhCC--CceEEeccCchhhhhcCC
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~~~~-------------~~~~~~~~iptL~e~l~~~~~--~~~~ieiK~~~~~~~~~~ 235 (667)
.++++||+||++|+++.|+..+.+ .+.| ++||||+|+|+++++ ..++||||.+........
T Consensus 70 --~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g--e~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~~~~ 145 (351)
T cd08608 70 --DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN--QSVCSLAELLELAKRYNASVLLNLRRPPPNHPYHQ 145 (351)
T ss_pred --ccccCCHHHHhhCCCCcccccCCccccccccccccccccCC--CCCCCHHHHHHHHHhcCCeEEEEECCCcccCcchh
Confidence 578999999999999988743221 3334 699999999999964 568999995421111113
Q ss_pred cHHHHHHHHHhhcCCc----eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHH-hhccee
Q 005970 236 SMRSFVLSVSRSVVVN----YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGI 310 (667)
Q Consensus 236 ~~~~~l~~~l~~~~~~----~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~-~~a~~i 310 (667)
.+++.+++++.+++.. +++||+. ++++++.. | +.+.. . ... . .+..+. ..+.++
T Consensus 146 ~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~-P-~~~~~--~-~~~--------~------~~~~~~~~~~~~l 204 (351)
T cd08608 146 SWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVA-P-GFQQT--S-GEK--------L------PVASLRERGITRL 204 (351)
T ss_pred HHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHC-C-CCeee--c-ccc--------c------hHHHHHHcCCeEE
Confidence 4667788888887752 5678766 46788875 3 34432 1 000 0 011121 124455
Q ss_pred cCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchh
Q 005970 311 LVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (667)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~ 390 (667)
++.+..+ ++++|+.+|++|++|++||||++ .+|+.++++| |||||||+|+.+.+
T Consensus 205 ~~~~~~l-----------t~~~v~~~~~~Gl~V~vWTVN~~------------~~~~~l~~~G---VdgIiTD~P~~l~~ 258 (351)
T cd08608 205 NLRYTQA-----------SAQEIRDYSASNLSVNLYTVNEP------------WLYSLLWCSG---VPSVTSDASHVLRK 258 (351)
T ss_pred ccchhhc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEECCHHHHHH
Confidence 5544322 46799999999999999999753 7899999888 99999999998877
Q ss_pred hhhh
Q 005970 391 AVDC 394 (667)
Q Consensus 391 ~l~~ 394 (667)
+..-
T Consensus 259 l~~~ 262 (351)
T cd08608 259 VPFP 262 (351)
T ss_pred hhhh
Confidence 6543
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti |
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=359.45 Aligned_cols=255 Identities=17% Similarity=0.177 Sum_probs=181.0
Q ss_pred CCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCC
Q 005970 88 TGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (667)
Q Consensus 88 ~~~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (667)
...+|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 23 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~--------------- 85 (300)
T cd08612 23 SPFPCRHISHRGGSGENLENTMEAFEHAVKVGTD--MLELDVHLTKDGQVVVSHDENLLRSCGVD--------------- 85 (300)
T ss_pred cCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECcCCeEEEECCccccccCCCC---------------
Confidence 3457899999999999999999999999999999 99999999999999999999999999943
Q ss_pred CCCccccccCCHHhhcccccccccc-----CCCCCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhcCCcHHHHHH
Q 005970 168 PTPGWFSIDYTLNDLSNIILNQGVY-----SRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVL 242 (667)
Q Consensus 168 ~~~g~~v~d~t~~el~~l~~~~~~~-----~~~~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~~~~~~~~l~ 242 (667)
+.|+++||+||++++++..+. .++..|.| ++||||+|+|+++++..++||||.+. ..+++.++
T Consensus 86 ----g~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g--~~IPtL~EvL~~~~~~~lnIEiK~~~------~~~~~~v~ 153 (300)
T cd08612 86 ----KLVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD--RRIPLLEEVFEAFPDTPINIDIKVEN------DELIKKVS 153 (300)
T ss_pred ----cccccCCHHHHhhccccccccccCCccccccCCC--CCCCCHHHHHHhCCCCeEEEEECCCc------hHHHHHHH
Confidence 279999999999995543210 11234444 69999999999998889999999642 13678899
Q ss_pred HHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCC---------ccCCCCCcchhHHhhcHHH--HHhhcc
Q 005970 243 SVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKS---------EIEPTTNQTYGSLLKNLTF--IKTFAS 308 (667)
Q Consensus 243 ~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~y~~~~~~l~~--i~~~a~ 308 (667)
+++++++. ++++|||++.|+++++.. | ++++.+ +.... ...+..+.....+...... +..+..
T Consensus 154 ~~i~~~~~~~~v~isSF~~~~L~~~~~~~-p-~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (300)
T cd08612 154 DLVRKYKREDITVWGSFNDEIVKKCHKEN-P-NIPLFF-SLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFP 230 (300)
T ss_pred HHHHHcCCCCcEEEEeCCHHHHHHHHHhC-C-CccEEe-chHHHHHHHHHHHcccCccccCccccccccchhhhhhhccc
Confidence 99998876 399999999999999985 3 566654 21100 0000000000000000000 000000
Q ss_pred e--ecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCC
Q 005970 309 G--ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (667)
Q Consensus 309 ~--i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~ 386 (667)
. .........+. .+...++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+
T Consensus 231 ~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~ 292 (300)
T cd08612 231 KSMSRLNRFVLFLI---DWLLMRPSLFRHLQKRGIQVYGWVLNDE------------EEFERAFELG---ADGVMTDYPT 292 (300)
T ss_pred ccccccccceeccc---ccccCCHHHHHHHHHCCCEEEEeecCCH------------HHHHHHHhcC---CCEEEeCCHH
Confidence 0 00000001110 0122357899999999999999999753 8899999887 9999999999
Q ss_pred Cchhhh
Q 005970 387 TPSAAV 392 (667)
Q Consensus 387 ~~~~~l 392 (667)
.+.+++
T Consensus 293 ~l~~~l 298 (300)
T cd08612 293 KLREFL 298 (300)
T ss_pred HHHHHH
Confidence 877665
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family. |
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=345.29 Aligned_cols=221 Identities=15% Similarity=0.200 Sum_probs=162.2
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++. +.
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~-------------------~~ 59 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGAR--FVEFDVQLSADGVPVVFHDDTLLRLTGVE-------------------GL 59 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEECCCccccccCCC-------------------ce
Confidence 6899999999999999999999999999 99999999999999999999999999943 27
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC---CceEEeccCchhhhhcCCcHHHHHHHHHhhc--
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV-- 248 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~---~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~-- 248 (667)
|.++||+||++++++... .++..|.+ ++||||+|+|+++++ .+++||+|.+.... ..+.+.+..+++..
T Consensus 60 v~~~t~~el~~l~~~~~~-~~~~~~~~--~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~~~ 133 (229)
T cd08581 60 LHELEDAELDSLRVAEPA-RFGSRFAG--EPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR---FGLERVVDKVLRALPA 133 (229)
T ss_pred eccCCHHHHhhcccccCc-ccccccCC--ccCCCHHHHHHHHhhCCCceEEEEecCCcccc---cchhHHHHHHHHHHHh
Confidence 999999999999764321 12345555 699999999999854 57999999654221 12233334444433
Q ss_pred --CCceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCccccccCCCCC
Q 005970 249 --VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLY 325 (667)
Q Consensus 249 --~~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~~~~~~ 325 (667)
...+++|||+..|+++++. + ..++.+.+ ... . . .. ...... .+..+.+.+.
T Consensus 134 ~~~~~~i~SF~~~~l~~~r~~--~-~~~~~~l~-~~~--~---~---~~----~~~~~~~~~~~~~~~~~---------- 187 (229)
T cd08581 134 VAAQRVLISFDYDLLALAKQQ--G-GPRTGWVL-PDW--D---D---AS----LAEADELQPDYLFCDKN---------- 187 (229)
T ss_pred ccCCeEEEeCCHHHHHHHHhc--C-CCCeEEEe-ccC--C---h---HH----HHHHHhhCCCEEecccc----------
Confidence 3358999999999999998 2 46666532 111 0 0 00 011111 1222222111
Q ss_pred CCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCC
Q 005970 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (667)
Q Consensus 326 l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P 385 (667)
+ ...++.+|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 188 ~---~~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~G---VdgiiTD~P 229 (229)
T cd08581 188 L---LPDTGDLWAGTWKWVIYEVNEP------------AEALALAARG---VALIETDNI 229 (229)
T ss_pred c---ChhhHHHHhCCceEEEEEcCCH------------HHHHHHHHhC---CcEEEcCCC
Confidence 1 1358889999999999999754 7899999888 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=341.75 Aligned_cols=202 Identities=18% Similarity=0.200 Sum_probs=161.2
Q ss_pred eEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCccc
Q 005970 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (667)
Q Consensus 409 ~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i 488 (667)
+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|. |
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~------------------~~g~-v 61 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGG------------------VDLK-V 61 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCC------------------CCce-e
Confidence 48999999999999999999999999999999999999999999999999999999 7776 9
Q ss_pred ccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHH
Q 005970 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (667)
Q Consensus 489 ~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~ 568 (667)
.++||+||++++++ +++||||+|||+.+++. ..++||||.+ ..++.++++
T Consensus 62 ~~~t~~eL~~l~~~------------------g~~iPtL~evl~~~~~~---~~l~iEiK~~---------~~~~~~~~~ 111 (226)
T cd08568 62 KELTYKELKKLHPG------------------GELIPTLEEVFRALPND---AIINVEIKDI---------DAVEPVLEI 111 (226)
T ss_pred ecCCHHHHhhCCCC------------------CCcCCCHHHHHHhcCCC---cEEEEEECCc---------cHHHHHHHH
Confidence 99999999999875 27899999999999764 4799999964 245789999
Q ss_pred HHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHh--hhhcCCCeeEEeCCCCCccH
Q 005970 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF--ADSVVLTMSLYLKRGTSSQT 645 (667)
Q Consensus 569 l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~--a~~i~~~~~i~~~~~~~~~~ 645 (667)
++++++. ++++++|||+++|++++++ |+++++++++....... ...+.+. +..+++............++
T Consensus 112 l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (226)
T cd08568 112 VEKFNAL----DRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFS---IPELHEKLKLYSLHVPIDAIGYIGFEKFV 184 (226)
T ss_pred HHHcCCC----CcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccC---HHHHHHhcCCcEeccchhhhccccccccH
Confidence 9999887 7999999999999999999 99999999864211000 0011111 11222210000000111246
Q ss_pred HHHHHHHHcCCcEEEEeccCC
Q 005970 646 QLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 646 ~~v~~ah~~Gl~V~vWTVn~e 666 (667)
++|+.+|++|++|++||||++
T Consensus 185 ~~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 185 ELLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred HHHHHHHHCCCEEEEEcCCCH
Confidence 999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form. |
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=340.55 Aligned_cols=228 Identities=16% Similarity=0.118 Sum_probs=172.6
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. +.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~-------------------g~ 59 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVD--AVEFDVHLTADGEVVVIHDPTLDRTTHGT-------------------GA 59 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeEEEccCCCEEEECCChhhcccCCC-------------------Cc
Confidence 6899999999999999999999999999 99999999999999999999999999843 26
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHHHHHHhhcCCc
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~~ 251 (667)
|.++||+||++|+++.++ +++||||+|+|++++ +..++||+|.+... .....+++.++++++++++.
T Consensus 60 v~~~t~~el~~l~~~~~~----------~~~iptL~evl~~~~~~~~~l~iEiK~~~~~-~~~~~~~~~v~~~i~~~~~~ 128 (235)
T cd08565 60 VRDLTLAERKALRLRDSF----------GEKIPTLEEVLALFAPSGLELHVEIKTDADG-TPYPGAAALAAATLRRHGLL 128 (235)
T ss_pred eeeccHHHHhcCCCCCCC----------CCCCCCHHHHHHHhhccCcEEEEEECCCCCC-CccHHHHHHHHHHHHhCCCc
Confidence 999999999999998753 359999999999985 46799999964210 01124778899999998763
Q ss_pred ---eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHH-HhhcceecCCCccccccCCCCCCC
Q 005970 252 ---YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFI-KTFASGILVPKDYIWPVDESLYLL 327 (667)
Q Consensus 252 ---~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i-~~~a~~i~~~~~~~~~~~~~~~l~ 327 (667)
+++||++..|+++++. + +.++.+ +.......... .+. .+... ...+..+++..... .
T Consensus 129 ~~v~~~Sf~~~~l~~~~~~-p--~~~~~~-l~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~---------~ 189 (235)
T cd08565 129 ERSVLTSFDPAVLTEVRKH-P--GVRTLG-SVDEDMLERLG--GEL----PFLTATALKAHIVAVEQSLL---------A 189 (235)
T ss_pred CCEEEEECCHHHHHHHHhC-C--CCcEEE-Eeccccccccc--ccc----chhhhhhccCcEEccCcccc---------c
Confidence 9999999999999998 4 577775 33211100000 000 00011 11233333332210 1
Q ss_pred CChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCc
Q 005970 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (667)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~ 388 (667)
....+|+.+|+ |++|++||||++ ++|++++++| |||||||+|+.+
T Consensus 190 ~~~~~v~~~~~-g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD~P~~~ 234 (235)
T cd08565 190 ATWELVRAAVP-GLRLGVWTVNDD------------SLIRYWLACG---VRQLTTDRPDLA 234 (235)
T ss_pred CCHHHHHHHhC-CCEEEEEccCCH------------HHHHHHHHcC---CCEEEeCCcccc
Confidence 24678999974 999999999753 7899999888 999999999865
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=337.71 Aligned_cols=222 Identities=19% Similarity=0.214 Sum_probs=173.9
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. +.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad--~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~-------------------~~ 59 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVR--WVEFDVKLSGDGTLVLIHDDTLDRTTNGS-------------------GA 59 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEeECCCCCEEEEcCCCCccccCCC-------------------ce
Confidence 6899999999999999999999999999 99999999999999999999999999943 27
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~- 250 (667)
|+++||+||++++.+.++ .+.|.+ .+||||+|+|++++ +..++||+|.+... ...+++.+.+++++++.
T Consensus 60 i~~lt~~el~~l~~~~~~---~~~~~~--~~iptl~evl~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~~~~~ 131 (229)
T cd08562 60 VTELTWAELAQLDAGSWF---SPEFAG--EPIPTLADVLELARELGLGLNLEIKPDPGD---EALTARVVAAALRELWPH 131 (229)
T ss_pred eecCcHHHHhhcCCCccc---CCCCCC--CCCCCHHHHHHHHHhcCCEEEEEECCCCCc---cHHHHHHHHHHHHHhcCC
Confidence 999999999999988764 334444 59999999999995 46799999965321 23466778888888865
Q ss_pred ---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhh-cceecCCCccccccCCCCCC
Q 005970 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDESLYL 326 (667)
Q Consensus 251 ---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~~~~~~~~~~l 326 (667)
++++||+++.|+++++.. | ..++.+.. ... +... ...+... +..+.+.+..
T Consensus 132 ~~~v~~~Sf~~~~l~~~~~~~-p-~~~~~~l~-~~~------~~~~------~~~~~~~~~~~~~~~~~~---------- 186 (229)
T cd08562 132 ASKLLLSSFSLEALRAARRAA-P-ELPLGLLF-DTL------PADW------LELLAALGAVSIHLNYRG---------- 186 (229)
T ss_pred cCCEEEECCCHHHHHHHHHhC-C-CCcEEEEe-cCC------CcCH------HHHHHHcCCeEEecChhh----------
Confidence 389999999999999985 3 56666522 111 0111 1111111 3334443221
Q ss_pred CCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCC
Q 005970 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (667)
Q Consensus 327 ~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P 385 (667)
.+..+|+.+|++|++|++||+|++ ++++.++++| |||||||+|
T Consensus 187 -~~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---VdgiiTD~p 229 (229)
T cd08562 187 -LTEEQVKALKDAGYKLLVYTVNDP------------ARAAELLEWG---VDAIFTDRP 229 (229)
T ss_pred -CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCC
Confidence 246799999999999999999754 7899999888 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG) |
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=345.94 Aligned_cols=245 Identities=21% Similarity=0.218 Sum_probs=175.5
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|+++|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~------------------- 59 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGAD--MLELDVQLTKDGQVVVFHDWDLDRLTGGS------------------- 59 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEEcCCcccceeCCc-------------------
Confidence 689999999999999999999999999999 99999999999999999999999999943
Q ss_pred cccccCCHHhhccccccccccCCC------CCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhcCCcHHHHHHHHH
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSRT------DKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~~------~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~~~~~~~~l~~~l 245 (667)
+.|+++|++||++++++.++...+ ..+. +.+||||+|+|+.+++..++||+|.+.. ..+++.+++++
T Consensus 60 ~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i 132 (264)
T cd08575 60 GLVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG--DGRIPTLEEVFKAFPDTPINIDIKSPDA-----EELIAAVLDLL 132 (264)
T ss_pred eEEecCCHHHHHhcccCCccccCCCCcccccCCC--CCcCCcHHHHHHhCCCCeEEEEECCCCH-----HHHHHHHHHHH
Confidence 279999999999999987653211 1122 4699999999999988889999996532 25778899999
Q ss_pred hhcCCc---eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCc-------
Q 005970 246 RSVVVN---YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD------- 315 (667)
Q Consensus 246 ~~~~~~---~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~------- 315 (667)
+++++. +++||++..|+++++.. | +.++.+.. ......... ..+.... .....+..+..+.+...
T Consensus 133 ~~~~~~~~~~~~Sf~~~~l~~~~~~~-p-~~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 207 (264)
T cd08575 133 EKYKREDRTVWGSTNPEYLRALHPEN-P-NLFESFSM-TRCLLLYLA-LGYTGLL-PFVPIKESFFEIPRPVIVLETFTL 207 (264)
T ss_pred HhccccceEEEEeCCHHHHHHHHHhC-c-ccccccCc-hhHHHHHHH-hheeccC-CCCCCCceEEEeecccEEEEEecc
Confidence 988763 99999999999999985 3 34333211 000000000 0000000 00000000011111100
Q ss_pred ---cccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCc
Q 005970 316 ---YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (667)
Q Consensus 316 ---~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~ 388 (667)
.+.+ .+...++++|+.+|++|++|++||||+. .+|++++++| |||||||+|+.+
T Consensus 208 ~~~~~~~----~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~~~ 264 (264)
T cd08575 208 GEGASIV----AALLWWPNLFDHLRKRGIQVYLWVLNDE------------EDFEEAFDLG---ADGVMTDSPTKL 264 (264)
T ss_pred ccccchh----hhhhcCHHHHHHHHhcCCcEEEEEECCH------------HHHHHHHhcC---CCEEEeCCcccC
Confidence 0000 0112357899999999999999999754 7899999888 999999999853
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. |
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=355.34 Aligned_cols=256 Identities=22% Similarity=0.274 Sum_probs=189.6
Q ss_pred cccCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccc
Q 005970 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (667)
Q Consensus 402 ~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~ 481 (667)
..+..+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+... .|+++.+.
T Consensus 21 ~~~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~-~~~~~~~~----- 94 (355)
T PRK11143 21 AADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAE-RFPDRARK----- 94 (355)
T ss_pred hhcCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCccc-cccccccc-----
Confidence 346778999999999999999999999999999999999999999999999999999999999553 36665432
Q ss_pred cCCCcccccCCHHHHcccCCCccCCcc-ccc----ccCCCCCCCCccccCHHHHHHHHHhcC----CcceEEEEeecchh
Q 005970 482 AGSGIFSFSLIWDEIQTLIPQISNPYF-KFK----LFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVY 552 (667)
Q Consensus 482 ~~~g~~i~d~t~~EL~~L~~~~~~p~~-~~~----~~~~~~~~~~~~iPtL~EvL~~~~~~~----~~~~l~iEiK~~~~ 552 (667)
.+.+ +|.++||+||++|+++.++... +.. ..+.+.+..+++||||+|+|++++..+ ..++++||||.+..
T Consensus 95 ~g~~-~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~ 173 (355)
T PRK11143 95 DGRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWF 173 (355)
T ss_pred CCce-eEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCccc
Confidence 1334 4999999999999998643100 000 011122223589999999999998631 12579999998654
Q ss_pred hhhhhcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHh-c-cC----CcEEEEecc-chhh------------
Q 005970 553 LAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-TS----YELVYKVKE-NIRD------------ 613 (667)
Q Consensus 553 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~-~-p~----~~~~~L~~~-~~~~------------ 613 (667)
.. ..+.+++++|+++|+++++... .++++|+|||+++|+++++ + |+ +++++++.. .+..
T Consensus 174 ~~-~~~~~~~~~v~~~l~~~g~~~~-~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 251 (355)
T PRK11143 174 HH-QEGKDIAAKVLEVLKKYGYTGK-DDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVN 251 (355)
T ss_pred cc-ccchhHHHHHHHHHHHhCCCCC-CCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccc
Confidence 21 1235689999999999998521 1589999999999999998 6 87 488888742 1100
Q ss_pred --h----hHHHHHHHHHhhhhcCCC-eeEEeC---CCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 614 --A----LNQTIEDIKKFADSVVLT-MSLYLK---RGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 614 --~----~~~~l~~~~~~a~~i~~~-~~i~~~---~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
. +...+.++..++..++|+ ..+... +...+++++|+++|++|++|++||||++
T Consensus 252 ~~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~ 314 (355)
T PRK11143 252 YNYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRAD 314 (355)
T ss_pred cchhhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEeccc
Confidence 0 112345566678888877 333321 1234567999999999999999999974
|
|
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=344.64 Aligned_cols=226 Identities=20% Similarity=0.220 Sum_probs=164.7
Q ss_pred ceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCc
Q 005970 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (667)
Q Consensus 407 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~ 486 (667)
++.||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||... .++++ ..+
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g-~~~~~---------~~~- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVAD-VFPER---------AHE- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCc-ccccc---------ccc-
Confidence 3689999999999999999999999999999999999999999999999999999999321 11111 123
Q ss_pred ccccCCHHHHcccCCCccCCc----cccc-c--cCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcc
Q 005970 487 FSFSLIWDEIQTLIPQISNPY----FKFK-L--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (667)
Q Consensus 487 ~i~d~t~~EL~~L~~~~~~p~----~~~~-~--~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 559 (667)
.|.++||+||++|++|.++.. ..+. . +....|.+ ++||||+|+|+++++.+ ..++||||.+.... ....
T Consensus 70 ~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~IPtL~evl~~~~~~~--~~l~iEiK~~~~~~-~~~~ 145 (252)
T cd08574 70 RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN-QSIPSLAELLRLAKKHN--KSVIFDLRRPPPNH-PYYQ 145 (252)
T ss_pred chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC-CCCCCHHHHHHHHHHcC--CeEEEEecCCcccC-ccHH
Confidence 389999999999999976410 0000 0 00113454 89999999999998752 37999999753100 0123
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeC
Q 005970 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLK 638 (667)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~ 638 (667)
.++++++++|+++++. ++++++||+.. ++.++++ |+++++++..... ..+.. +++. .+.+.
T Consensus 146 ~~~~~v~~~l~~~~~~----~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~~--------~~~~~----~~~~-~~~~~ 207 (252)
T cd08574 146 SYVNITLDTILASGIP----QHQVFWLPDEY-RALVRKVAPGFQQVSGRKLPV--------ESLRE----NGIS-RLNLE 207 (252)
T ss_pred HHHHHHHHHHHHcCCC----cccEEEccHHH-HHHHHHHCCCCeEeeccccch--------HHHHh----cCCe-EEccC
Confidence 5889999999999986 46667666654 8999999 9999987543211 11111 2221 22221
Q ss_pred CCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 639 RGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 639 ~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
. ...++++|+.+|++|++|++||||++
T Consensus 208 ~-~~~~~~~v~~~~~~g~~v~~WTVn~~ 234 (252)
T cd08574 208 Y-SQLSAQEIREYSKANISVNLYVVNEP 234 (252)
T ss_pred c-ccCCHHHHHHHHHCCCEEEEEccCCH
Confidence 1 12356999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.89 Aligned_cols=215 Identities=16% Similarity=0.233 Sum_probs=169.2
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|| ++|. |.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~------------------~~g~-v~ 61 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTD------------------GTGL-VA 61 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecC------------------CCce-Ee
Confidence 6899999999999999999999999999999999999999999999999999999 6775 99
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++||+||++|+++.+++. ...|.+ ++||||+|+|+.+++.. +.++||||.+.. .++++++++|
T Consensus 62 ~~t~~el~~l~~~~~~~~-------~~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~~-------~~~~~v~~~l 124 (258)
T cd08573 62 ELTWEELRKLNAAAKHRL-------SSRFPG-EKIPTLEEAVKECLENN--LRMIFDVKSNSS-------KLVDALKNLF 124 (258)
T ss_pred cCcHHHHhhCCCCCCCCC-------ccccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCcH-------HHHHHHHHHH
Confidence 999999999999876532 234554 89999999999998642 479999997542 5778999999
Q ss_pred HhcC-CCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhh------------hH----HHHHHHHHh------
Q 005970 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDA------------LN----QTIEDIKKF------ 625 (667)
Q Consensus 570 ~~~~-~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~------------~~----~~l~~~~~~------ 625 (667)
++++ +. ++++|+||++++|++++++ |+++++++++...... .. ..+..+..+
T Consensus 125 ~~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (258)
T cd08573 125 KKYPGLY----DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWL 200 (258)
T ss_pred HHCCCcc----CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998 76 7999999999999999999 9999999985311000 00 001101101
Q ss_pred hhhcCCCeeEEeCCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 626 ADSVVLTMSLYLKRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 626 a~~i~~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
+..+++. .+.+. ....++++|+.+|++|++|++||||++
T Consensus 201 ~~~~~~~-~v~~~-~~~~~~~~v~~~~~~G~~v~vWTVn~~ 239 (258)
T cd08573 201 PYFLGVS-ALLIH-KDDISSAYVRYWRARGIRVIAWTVNTP 239 (258)
T ss_pred hhhcCee-EEEec-hHhcCHHHHHHHHHCCCEEEEEecCCH
Confidence 0122332 22222 222457999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G |
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=347.94 Aligned_cols=217 Identities=18% Similarity=0.154 Sum_probs=163.9
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
|+||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+|| ++|.
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~------------------~~g~- 61 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTN------------------GSGA- 61 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccC------------------CCCC-
Confidence 578999999999999999999999999999999999999999999999999999999 7776
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCC-CccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN-AGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~-~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (667)
|.++||+||++|++|.++... ....|.+ +++||||+|+|+.++.. .++||||.+.. ..+++.|+
T Consensus 62 v~~~t~~el~~ld~g~~~~~~-----~~~~~~~~~~~iPtL~evl~~~~~~----~l~iEiK~~~~------~~~~~~v~ 126 (263)
T cd08580 62 VSAYTAAQLATLNAGYNFKPE-----GGYPYRGKPVGIPTLEQVLRAFPDT----PFILDMKSLPA------DPQAKAVA 126 (263)
T ss_pred hhhCcHHHHhcCCCccccccc-----cCcccCCCCCcCccHHHHHHhhcCC----eEEEEECCCCc------HHHHHHHH
Confidence 999999999999998764210 0112332 25899999999999753 69999997542 26789999
Q ss_pred HHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cC-------CcEEEEeccchh---hhhH-----------HHHHHHHH
Q 005970 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TS-------YELVYKVKENIR---DALN-----------QTIEDIKK 624 (667)
Q Consensus 567 ~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~-------~~~~~L~~~~~~---~~~~-----------~~l~~~~~ 624 (667)
++|+++++. ++++|+|||+++|++++++ |+ +++++|.+.... +... ..+..+..
T Consensus 127 ~~i~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T cd08580 127 RVLERENAW----SRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVET 202 (263)
T ss_pred HHHHhcCCC----CCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheee
Confidence 999999987 7999999999999999999 95 444444321100 0000 00000001
Q ss_pred hhhhcCCCeeEEeCCCCCccHHHHHHHHHc-CCcEEEEeccCC
Q 005970 625 FADSVVLTMSLYLKRGTSSQTQLWRSTHIT-RELVLMELLQNS 666 (667)
Q Consensus 625 ~a~~i~~~~~i~~~~~~~~~~~~v~~ah~~-Gl~V~vWTVn~e 666 (667)
+ .++.. . .+.+....++++|+.+|++ |++|++||||++
T Consensus 203 ~--~~~~~-~-~~~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~ 241 (263)
T cd08580 203 F--TLGEG-R-SPVQATLWTPAAVDCFRRNSKVKIVLFGINTA 241 (263)
T ss_pred e--ccccc-c-cccccccCCHHHHHHHHhcCCcEEEEEEeCCH
Confidence 1 01111 1 1111123467999999999 999999999984
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. |
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=333.72 Aligned_cols=220 Identities=18% Similarity=0.170 Sum_probs=167.5
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCcc
Q 005970 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (667)
Q Consensus 93 ~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~ 172 (667)
+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. +
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~-------------------g 59 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGAD--GVELDVWLTKDGKLVVLHDENLKRVGGVD-------------------L 59 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcC--EEEEEEEEcCCCCEEEECCCcccccCCCC-------------------c
Confidence 48999999999999999999999999999 99999999999999999999999999843 2
Q ss_pred ccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 005970 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (667)
Q Consensus 173 ~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~- 250 (667)
.|.++||+||++++++ +++||||+|+|+++++ ..++||+|.+. ..+.++++++++++
T Consensus 60 ~v~~~t~~eL~~l~~~-------------g~~iPtL~evl~~~~~~~~l~iEiK~~~--------~~~~~~~~l~~~~~~ 118 (226)
T cd08568 60 KVKELTYKELKKLHPG-------------GELIPTLEEVFRALPNDAIINVEIKDID--------AVEPVLEIVEKFNAL 118 (226)
T ss_pred eeecCCHHHHhhCCCC-------------CCcCCCHHHHHHhcCCCcEEEEEECCcc--------HHHHHHHHHHHcCCC
Confidence 7999999999999875 2489999999999865 67999999642 35678888888874
Q ss_pred --ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCccccccCCCCCCC
Q 005970 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLL 327 (667)
Q Consensus 251 --~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~~~~~~l~ 327 (667)
.+++||+++.|+++++.. | ..++.+ +..... . .... ...... .+..+.+.+..+. . .+ ..
T Consensus 119 ~~v~i~SF~~~~l~~~~~~~-p-~~~~~~-l~~~~~--~--~~~~------~~~~~~~~~~~~~~~~~~~~-~--~~-~~ 181 (226)
T cd08568 119 DRVIFSSFNHDALRELRKLD-P-DAKVGL-LIGEEE--E--GFSI------PELHEKLKLYSLHVPIDAIG-Y--IG-FE 181 (226)
T ss_pred CcEEEEECCHHHHHHHHHhC-C-CCcEEE-Eeeccc--c--ccCH------HHHHHhcCCcEeccchhhhc-c--cc-cc
Confidence 499999999999999986 3 567765 322110 0 0000 011111 1233343322210 0 00 11
Q ss_pred CChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCC
Q 005970 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (667)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~ 387 (667)
.++++++.+|++|++|++||||++ ++++++.+ + |||||||+|+.
T Consensus 182 ~~~~~v~~~~~~G~~v~~WTvn~~------------~~~~~l~~-~---vdgiiTD~p~~ 225 (226)
T cd08568 182 KFVELLRLLRKLGLKIVLWTVNDP------------ELVPKLKG-L---VDGVITDDVEK 225 (226)
T ss_pred ccHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHh-h---CCEEEccCccc
Confidence 146899999999999999999753 67777763 4 99999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form. |
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=334.88 Aligned_cols=225 Identities=19% Similarity=0.216 Sum_probs=176.8
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. +.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~--~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~-------------------~~ 59 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGAD--GIETDVRLTKDGELVCVHDPTLKRTSGGD-------------------GA 59 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEecCCccccccCCC-------------------cc
Confidence 6899999999999999999999999999 99999999999999999999999999843 27
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC--CceEEeccCchhhhhcCCcHHHHHHHHHhhcC-C
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~--~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~-~ 250 (667)
|.++||+||++++++.++ ...|.+ ++||||+|+|+++++ ..++||+|.+ .....+++.+++++++++ .
T Consensus 60 i~~~t~~el~~l~~~~~~---~~~~~~--~~iptL~evl~~~~~~~~~l~ieiK~~----~~~~~~~~~~~~~~~~~~~~ 130 (233)
T cd08582 60 VSDLTLAELRKLDIGSWK---GESYKG--EKVPTLEEYLAIVPKYGKKLFIEIKHP----RRGPEAEEELLKLLKESGLL 130 (233)
T ss_pred hhhCCHHHHhcCCCCccc---CCCCCC--CcCCCHHHHHHHHHhcCceEEEEeCCC----ccCccHHHHHHHHHHHcCCC
Confidence 999999999999998764 234444 699999999999865 6799999975 122457888999999984 2
Q ss_pred ---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHH-hhcceecCCCccccccCCCCCC
Q 005970 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYL 326 (667)
Q Consensus 251 ---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~-~~a~~i~~~~~~~~~~~~~~~l 326 (667)
++++||++..++++++.. | ++++.+....... .... ..... ..+.++.+.+..
T Consensus 131 ~~~v~~~Sf~~~~l~~~~~~~-p-~~~~~~l~~~~~~------~~~~-----~~~~~~~~~~~i~~~~~~---------- 187 (233)
T cd08582 131 PEQIVIISFDAEALKRVRELA-P-TLETLWLRNYKSP------KEDP-----RPLAKSGGAAGLDLSYEK---------- 187 (233)
T ss_pred CCCEEEEecCHHHHHHHHHHC-C-CCcEEEEeccCcc------ccch-----hHHHHhhCceEEcccccc----------
Confidence 399999999999999986 3 5777753311110 0000 00111 124455543321
Q ss_pred CCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCC
Q 005970 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (667)
Q Consensus 327 ~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~ 386 (667)
...+++++.+|++|++|++||||+. ++|++++++| ||||+||+|+
T Consensus 188 ~~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---Vdgi~TD~p~ 232 (233)
T cd08582 188 KLNPAFIKALRDAGLKLNVWTVDDA------------EDAKRLIELG---VDSITTNRPG 232 (233)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCCC
Confidence 1247899999999999999999753 7899999887 9999999997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=338.70 Aligned_cols=212 Identities=16% Similarity=0.116 Sum_probs=162.6
Q ss_pred CceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCC
Q 005970 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (667)
Q Consensus 406 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g 485 (667)
..|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 6 ~~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~------------------~~~ 67 (249)
T PRK09454 6 PYPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSN------------------GWG 67 (249)
T ss_pred CCCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCC------------------CCC
Confidence 45899999999999999999999999999999999999999999999999999999999 667
Q ss_pred cccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHH
Q 005970 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (667)
Q Consensus 486 ~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (667)
. |.++||+||++++++.++ .+.|.+ ++||||+|+|+.++.. . +.++||||...... ....+.+
T Consensus 68 ~-v~~~t~~el~~l~~~~~~---------~~~~~~-~~iPtL~evl~~~~~~-~-~~l~iEiK~~~~~~----~~~~~~v 130 (249)
T PRK09454 68 V-AGELTWQDLAQLDAGSWF---------SAAFAG-EPLPTLSQVAARCRAH-G-MAANIEIKPTTGRE----AETGRVV 130 (249)
T ss_pred c-hhhCCHHHHHhcCCCCcc---------CCCCCC-CcCCCHHHHHHHHHhc-C-CEEEEEECCCCCcc----hhHHHHH
Confidence 5 999999999999998643 234554 8999999999999764 2 47999999643211 1233344
Q ss_pred HHHHHhc--CCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCC
Q 005970 566 MEALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTS 642 (667)
Q Consensus 566 ~~~l~~~--~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~ 642 (667)
..+++.. ++. ++++|+|||+++|++++++ |++++++++..... .....+. .++. ..+.+. ...
T Consensus 131 ~~~~~~~~~~~~----~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~----~~~~~~~----~~~~-~~~~~~-~~~ 196 (249)
T PRK09454 131 ALAARALWAGAA----VPPLLSSFSEDALEAARQAAPELPRGLLLDEWPD----DWLELTR----RLGC-VSLHLN-HKL 196 (249)
T ss_pred HHHHHHHhcCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccc----cHHHHHH----hcCC-eEEecc-ccc
Confidence 4444443 333 5899999999999999999 99999999864211 1111111 1222 122221 112
Q ss_pred ccHHHHHHHHHcCCcEEEEeccCC
Q 005970 643 SQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 643 ~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.++++++.+|++|++|++||||++
T Consensus 197 ~~~~~v~~~~~~g~~v~~WTvn~~ 220 (249)
T PRK09454 197 LDEARVAALKAAGLRILVYTVNDP 220 (249)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH
Confidence 357999999999999999999974
|
|
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=342.35 Aligned_cols=222 Identities=22% Similarity=0.205 Sum_probs=171.5
Q ss_pred eEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccC--CCc
Q 005970 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG--SGI 486 (667)
Q Consensus 409 ~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~--~g~ 486 (667)
+||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+|| + +|.
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~~g~ 63 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTN------------------IERPGP 63 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccC------------------CCCCce
Confidence 58999999999999999999999999999999999999999999999999999999 4 565
Q ss_pred ccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHH
Q 005970 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (667)
Q Consensus 487 ~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (667)
|.++||+||++++.+.++... +...++..+. +++||||+|+|+.+++. ++++||||.+... ..+++.++
T Consensus 64 -v~~~t~~el~~l~~~~~~~~~-~~~~~~~~~~-~~~iptL~evl~~~~~~---~~l~IEiK~~~~~-----~~~~~~v~ 132 (256)
T cd08601 64 -VKDYTLAEIKQLDAGSWFNKA-YPEYARESYS-GLKVPTLEEVIERYGGR---ANYYIETKSPDLY-----PGMEEKLL 132 (256)
T ss_pred -eecCcHHHHHhcCCCcccccc-CccccccccC-CccCCCHHHHHHHhccC---ceEEEEeeCCCCC-----CCHHHHHH
Confidence 999999999999987643100 0000112234 48999999999999875 4899999975431 25788999
Q ss_pred HHHHhcCCCCCC--CceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchh-hhhHHHHHHHHHhhhhcCCCeeEEeCCCCC
Q 005970 567 EALGNAGYNKQT--ALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-DALNQTIEDIKKFADSVVLTMSLYLKRGTS 642 (667)
Q Consensus 567 ~~l~~~~~~~~~--~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~-~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~ 642 (667)
++++++++.... .++++|+||++++|++++++ |+++++++++.... ......+..+..++.++++. ...
T Consensus 133 ~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 205 (256)
T cd08601 133 ATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPS-------IAD 205 (256)
T ss_pred HHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCc-------hhh
Confidence 999999875210 15899999999999999999 99999999864211 11112233333333344432 112
Q ss_pred ccHHHHHHHHHcCCcEEEEeccCC
Q 005970 643 SQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 643 ~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.++++|+.+|++|++|++||||+.
T Consensus 206 ~~~~~v~~~~~~g~~v~~wTvn~~ 229 (256)
T cd08601 206 ADPWMVHLIHKKGLLVHPYTVNEK 229 (256)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCH
Confidence 346899999999999999999973
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=335.30 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=160.3
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|. |.
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~~-v~ 61 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTG------------------VEGL-LH 61 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccC------------------CCce-ec
Confidence 6899999999999999999999999999999999999999999999999999999 6675 99
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++||+||++|+++.... ..+.|.+ ++||||+|+|+.+++.+. ++++||||.+.... ..+.+.+.+++
T Consensus 62 ~~t~~el~~l~~~~~~~-------~~~~~~~-~~iptL~evl~~~~~~~~-~~l~iEiK~~~~~~----~~~~~~v~~~~ 128 (229)
T cd08581 62 ELEDAELDSLRVAEPAR-------FGSRFAG-EPLPSLAAVVQWLAQHPQ-VTLFVEIKTESLDR----FGLERVVDKVL 128 (229)
T ss_pred cCCHHHHhhcccccCcc-------cccccCC-ccCCCHHHHHHHHhhCCC-ceEEEEecCCcccc----cchhHHHHHHH
Confidence 99999999997643211 1244554 899999999999987312 47999999765321 23445555566
Q ss_pred HhcC-CCCCCCceEEEEeCCHHHHHHHHhccCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHHHH
Q 005970 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQLW 648 (667)
Q Consensus 570 ~~~~-~~~~~~~~v~i~SFd~~~L~~~~~~p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~~v 648 (667)
+.++ +. ++++|+|||+++|+++|++|.++++++..... ... ...+..+++. .+.+...+. ..+
T Consensus 129 ~~~~~~~----~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~----~~~----~~~~~~~~~~-~~~~~~~~~---~~v 192 (229)
T cd08581 129 RALPAVA----AQRVLISFDYDLLALAKQQGGPRTGWVLPDWD----DAS----LAEADELQPD-YLFCDKNLL---PDT 192 (229)
T ss_pred HHHHhcc----CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCC----hHH----HHHHHhhCCC-EEecccccC---hhh
Confidence 6554 44 68999999999999999998899999875311 011 1223334554 222221221 468
Q ss_pred HHHHHcCCcEEEEeccCC
Q 005970 649 RSTHITRELVLMELLQNS 666 (667)
Q Consensus 649 ~~ah~~Gl~V~vWTVn~e 666 (667)
+.+|++|++|++||||++
T Consensus 193 ~~~~~~G~~v~vWTVn~~ 210 (229)
T cd08581 193 GDLWAGTWKWVIYEVNEP 210 (229)
T ss_pred HHHHhCCceEEEEEcCCH
Confidence 889999999999999984
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=341.60 Aligned_cols=249 Identities=18% Similarity=0.186 Sum_probs=182.0
Q ss_pred CCCEEEEeCCCCCC--CCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCC
Q 005970 90 DPPFVVARGGFSGI--FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (667)
Q Consensus 90 ~~~~iiaHRG~~~~--~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (667)
.+|+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.++++++...- .++. +|
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~-----~~~~--~~- 71 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVD--GVELDVFLTKDNEIVVFHGTEDDTNPDTSI-----QLDD--SG- 71 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCC--EEEEeeEECCCCCEEEEcCCccccCccccc-----cccC--CC-
Confidence 36899999999988 999999999999999999 999999999999999999998776332000 0000 01
Q ss_pred CCCccccccCCHHhhccccccccccCCCC---CCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHH
Q 005970 168 PTPGWFSIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLS 243 (667)
Q Consensus 168 ~~~g~~v~d~t~~el~~l~~~~~~~~~~~---~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~ 243 (667)
.+.|.++||+||++++++.++...+. .+. +++||||+|+|+++++ .+++||||.+. ..+++.+++
T Consensus 72 ---~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~~l~iEiK~~~------~~~~~~v~~ 140 (265)
T cd08564 72 ---FKNINDLSLDEITRLHFKQLFDEKPCGADEIK--GEKIPTLEDVLVTFKDKLKYNIELKGRE------VGLGERVLN 140 (265)
T ss_pred ---ccchhhCcHHHHhhcccCcccccCcccccccC--CccCCCHHHHHHHhccCcEEEEEeCCCc------hhHHHHHHH
Confidence 14799999999999999988743211 122 4699999999999965 68999999653 246788999
Q ss_pred HHhhcCC---ceEecCCH-HHHHHHHhhhCCCC---CceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCc
Q 005970 244 VSRSVVV---NYISSPEV-NFLRSIAARFRPSM---TKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKD 315 (667)
Q Consensus 244 ~l~~~~~---~~i~SFd~-~~L~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~ 315 (667)
++++++. ++|+||++ ++++++++.. + + +++.+ +..... ...+.+. +..... .+.++.+.+.
T Consensus 141 ~l~~~~~~~~v~i~SF~~~~~l~~~~~~~-~-~~~~~~~~~-l~~~~~-----~~~~~~~---~~~~~~~~~~~v~~~~~ 209 (265)
T cd08564 141 LVEKYGMILQVHFSSFLHYDRLDLLKALR-P-NKLNVPIAL-LFNEVK-----SPSPLDF---LEQAKYYNATWVNFSYD 209 (265)
T ss_pred HHHHcCCCCCEEEEecCchhHHHHHHHhC-c-CCCCceEEE-EecCCC-----CcccccH---HHHHHhcCCceeeechh
Confidence 9999886 49999999 9999999885 3 3 66665 322111 0011111 111121 1344444322
Q ss_pred cccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhh
Q 005970 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 316 ~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l 392 (667)
.+ .+.+|+.+|++|++|++||.+.- .|+.++|++++++| |||||||+|+.+.+++
T Consensus 210 ~~-----------~~~~v~~~~~~Gl~v~~wT~~~~--------~n~~~~~~~l~~~G---vdgiiTD~p~~~~~~~ 264 (265)
T cd08564 210 FW-----------TEEFVKKAHENGLKVMTYFDEPV--------NDNEEDYKVYLELG---VDCICPNDPVLLVNFL 264 (265)
T ss_pred hh-----------hHHHHHHHHHcCCEEEEecCCCC--------CCCHHHHHHHHHcC---CCEEEcCCHHHHHHhh
Confidence 21 36799999999999999993210 13458999999888 9999999999888765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=332.46 Aligned_cols=224 Identities=21% Similarity=0.290 Sum_probs=177.0
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
++||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~--~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~------------------- 59 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGAD--GIELDVHLTKDGQLVVIHDETVDRTTNGK------------------- 59 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCcccccCCC-------------------
Confidence 469999999999999999999999999999 99999999999999999999999999843
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHHHHHHhhcC
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~ 249 (667)
+.|.++||+||++++.+.++. ..+. ..+||||+|+|++++ +..++||+|.+... ...+++.+++++++++
T Consensus 60 ~~i~~~t~~el~~l~~~~~~~---~~~~--~~~iptL~evl~~~~~~~~~l~leiK~~~~~---~~~~~~~l~~~l~~~~ 131 (230)
T cd08563 60 GYVKDLTLEELKKLDAGSWFD---EKFT--GEKIPTLEEVLDLLKDKDLLLNIEIKTDVIH---YPGIEKKVLELVKEYN 131 (230)
T ss_pred CchhhCCHHHHHhcCCCCccC---ccCC--CCcCCCHHHHHHHHHhcCcEEEEEECCCCCc---ChhHHHHHHHHHHHcC
Confidence 269999999999999987642 2333 359999999999986 46799999965422 1357788999999987
Q ss_pred C---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhh-cceecCCCccccccCCCCC
Q 005970 250 V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDESLY 325 (667)
Q Consensus 250 ~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~~~~~~~~~~ 325 (667)
+ .+++||++..++++++.. | +.++.+ +.... ... ....+... +.++.+.+..
T Consensus 132 ~~~~v~~~Sf~~~~l~~~~~~~-p-~~~~~~-l~~~~-~~~-----------~~~~~~~~~~~~v~~~~~~--------- 187 (230)
T cd08563 132 LEDRVIFSSFNHESLKRLKKLD-P-KIKLAL-LYETG-LQD-----------PKDYAKKIGADSLHPDFKL--------- 187 (230)
T ss_pred CCCCEEEEcCCHHHHHHHHHHC-C-CCcEEE-EecCc-ccC-----------HHHHHHHhCCEEEccCchh---------
Confidence 5 399999999999999986 3 567765 32211 000 01111111 3344443321
Q ss_pred CCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCC
Q 005970 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (667)
Q Consensus 326 l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P 385 (667)
.++.+++.+|++|++|++||||+ .+++.+++++| ||||+||+|
T Consensus 188 --~~~~~i~~~~~~g~~v~~Wtvn~------------~~~~~~~~~~G---Vdgi~TD~P 230 (230)
T cd08563 188 --LTEEVVEELKKRGIPVRLWTVNE------------EEDMKRLKDLG---VDGIITNYP 230 (230)
T ss_pred --cCHHHHHHHHHCCCEEEEEecCC------------HHHHHHHHHCC---CCEEeCCCC
Confidence 24779999999999999999975 37899999888 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. |
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=346.57 Aligned_cols=227 Identities=16% Similarity=0.181 Sum_probs=169.1
Q ss_pred ccCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccccccccc
Q 005970 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (667)
Q Consensus 403 ~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~ 482 (667)
.....+.||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+++|+||
T Consensus 22 ~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~------------------ 83 (300)
T cd08612 22 KSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCG------------------ 83 (300)
T ss_pred ccCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCC------------------
Confidence 34567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHH
Q 005970 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVT 562 (667)
Q Consensus 483 ~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 562 (667)
++|. |.++|++||++|+++...-+. .+..+.+.+.+ ++||||+|+|+.++. +.++||||.+.. .++
T Consensus 84 ~~g~-V~~~t~~eL~~l~~~~~~~~~-~~~~~~~~~~g-~~IPtL~EvL~~~~~----~~lnIEiK~~~~-------~~~ 149 (300)
T cd08612 84 VDKL-VSDLNYADLPPYLEKLEVTFS-PGDYCVPKGSD-RRIPLLEEVFEAFPD----TPINIDIKVEND-------ELI 149 (300)
T ss_pred CCcc-cccCCHHHHhhcccccccccc-CCccccccCCC-CCCCCHHHHHHhCCC----CeEEEEECCCch-------HHH
Confidence 7776 999999999999654210000 00012344554 899999999999854 379999997532 478
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhh-------h------HH------HHHHH
Q 005970 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDA-------L------NQ------TIEDI 622 (667)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~-------~------~~------~l~~~ 622 (667)
++++++++++++. ++++|+|||+++|.+++++ |+++++++++...... . .. .....
T Consensus 150 ~~v~~~i~~~~~~----~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (300)
T cd08612 150 KKVSDLVRKYKRE----DITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFL 225 (300)
T ss_pred HHHHHHHHHcCCC----CcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhh
Confidence 8999999999987 7999999999999999999 9999999764310000 0 00 00000
Q ss_pred HHhhh----hcCCCeeEEeCCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 623 KKFAD----SVVLTMSLYLKRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 623 ~~~a~----~i~~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
..+.. .... ...++.+....++++|+.+|++|++|++||||++
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~ 272 (300)
T cd08612 226 KTYFPKSMSRLNR-FVLFLIDWLLMRPSLFRHLQKRGIQVYGWVLNDE 272 (300)
T ss_pred hhccccccccccc-ceecccccccCCHHHHHHHHHCCCEEEEeecCCH
Confidence 00000 0000 0111112223467999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family. |
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=331.17 Aligned_cols=215 Identities=17% Similarity=0.243 Sum_probs=171.6
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|+.. +.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad--~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~-------------------~~ 59 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPD--YVEIDVQETKDGQFVVMHDANLKRLAGVN-------------------KK 59 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcCCchhhccCCC-------------------CC
Confidence 6899999999999999999999999999 99999999999999999999999999843 27
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC--CceEEeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~--~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~- 250 (667)
|.++||+||++++++.++ . +.+||||+|+|+++++ ..++||+|.+.. ....+.+.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~~-------~--~~~iptL~evl~~~~~~~~~l~iEiK~~~~---~~~~~~~~v~~~l~~~~~~ 127 (220)
T cd08579 60 VWDLTLEELKKLTIGENG-------H--GAKIPSLDEYLALAKGLKQKLLIELKPHGH---DSPDLVEKFVKLYKQNLIE 127 (220)
T ss_pred hhhCCHHHHhcCcCccCC-------C--CCcCCCHHHHHHHhhccCCeEEEEECCCCC---CCHHHHHHHHHHHHHcCCC
Confidence 999999999999987652 2 3599999999999964 679999996542 223577888999998875
Q ss_pred --ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCCCCC
Q 005970 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (667)
Q Consensus 251 --~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~ 328 (667)
++++||++..++.+++.. | ..++.+.. ... .. . +. ...++.+++.+.. .
T Consensus 128 ~~v~v~Sf~~~~l~~~~~~~-p-~~~~~~~~-~~~-~~--------~----~~--~~~~~~~~~~~~~-----------~ 178 (220)
T cd08579 128 NQHQVHSLDYRVIEKVKKLD-P-KIKTGYIL-PFN-IG--------N----LP--KTNVDFYSIEYST-----------L 178 (220)
T ss_pred cCeEEEeCCHHHHHHHHHHC-C-CCeEEEEE-ecc-cC--------c----cc--ccCceEEeeehhh-----------c
Confidence 389999999999999875 3 56666522 111 00 0 00 1123334332211 2
Q ss_pred ChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCC
Q 005970 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (667)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P 385 (667)
++.+++.+|++|++|++||+|++ ++++.++++| ||||+||+|
T Consensus 179 ~~~~v~~~~~~G~~v~~wtvn~~------------~~~~~~~~~G---vd~i~TD~P 220 (220)
T cd08579 179 NKEFIRQAHQNGKKVYVWTVNDP------------DDMQRYLAMG---VDGIITDYP 220 (220)
T ss_pred CHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCEEeCCCC
Confidence 46799999999999999999753 7899999888 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. |
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=330.65 Aligned_cols=209 Identities=21% Similarity=0.208 Sum_probs=167.5
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|. |+
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~------------------~~~~-i~ 61 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTN------------------GSGA-VT 61 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccC------------------CCce-ee
Confidence 6899999999999999999999999999999999999999999999999999999 6665 99
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++||+||++|+.+.++ .+.|. +++||||+|+|+++++.+ +.++||||.+... ...+++.|++++
T Consensus 62 ~lt~~el~~l~~~~~~---------~~~~~-~~~iptl~evl~~~~~~~--~~l~iEiK~~~~~----~~~~~~~v~~~l 125 (229)
T cd08562 62 ELTWAELAQLDAGSWF---------SPEFA-GEPIPTLADVLELARELG--LGLNLEIKPDPGD----EALTARVVAAAL 125 (229)
T ss_pred cCcHHHHhhcCCCccc---------CCCCC-CCCCCCHHHHHHHHHhcC--CEEEEEECCCCCc----cHHHHHHHHHHH
Confidence 9999999999987542 23444 389999999999998652 4799999975431 135788899999
Q ss_pred HhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHHHH
Q 005970 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQLW 648 (667)
Q Consensus 570 ~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~~v 648 (667)
++++... ++++|+||++++|..+++. |+++++++......+ .. ..+..+++. .+.+... ..+.++|
T Consensus 126 ~~~~~~~---~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~----~~----~~~~~~~~~-~~~~~~~-~~~~~~v 192 (229)
T cd08562 126 RELWPHA---SKLLLSSFSLEALRAARRAAPELPLGLLFDTLPAD----WL----ELLAALGAV-SIHLNYR-GLTEEQV 192 (229)
T ss_pred HHhcCCc---CCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcC----HH----HHHHHcCCe-EEecChh-hCCHHHH
Confidence 9998741 6999999999999999999 999999987542111 11 111222322 2222111 2356899
Q ss_pred HHHHHcCCcEEEEeccCC
Q 005970 649 RSTHITRELVLMELLQNS 666 (667)
Q Consensus 649 ~~ah~~Gl~V~vWTVn~e 666 (667)
+.+|++|++|++||||++
T Consensus 193 ~~~~~~g~~v~~wTvn~~ 210 (229)
T cd08562 193 KALKDAGYKLLVYTVNDP 210 (229)
T ss_pred HHHHHCCCEEEEEeCCCH
Confidence 999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG) |
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=335.01 Aligned_cols=242 Identities=20% Similarity=0.184 Sum_probs=176.8
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCC--CCC
Q 005970 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV--PTP 170 (667)
Q Consensus 93 ~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~--~~~ 170 (667)
.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|+... +|+ ...
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad--~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~-----------~~~~~~~~ 68 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVD--TLELDLVLTKDGVIVVSHDPKLNPDITRDP-----------DGAWLPYE 68 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEcCCCCEEEeCCCccCcceeecC-----------CCCccccc
Confidence 58999999999999999999999999999 999999999999999999999998764111 011 112
Q ss_pred ccccccCCHHhhccccccccccC--CCCCCCCC----CCccCCHHHHHHhhCC-----CceEEeccCchhhh---hcCCc
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYS--RTDKFDGN----GFQILTVQDMARQIKP-----PGLWLNIQHDAFYA---QHNLS 236 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~--~~~~~~~~----~~~iptL~e~l~~~~~-----~~~~ieiK~~~~~~---~~~~~ 236 (667)
++.|+++||+||++|+++.++.. ....|.+. +.+||||+|+|+++++ ..++||+|.+.... .....
T Consensus 69 ~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 148 (263)
T cd08567 69 GPALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEE 148 (263)
T ss_pred CcchhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHH
Confidence 35899999999999999876411 12222210 2689999999999964 67999999653221 11235
Q ss_pred HHHHHHHHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecC
Q 005970 237 MRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILV 312 (667)
Q Consensus 237 ~~~~l~~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~ 312 (667)
+++.++++++++++ ++++||+++.++.+++.. | +.++.+.. .... ...+. ..+.. -+..+.+
T Consensus 149 ~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~-p-~~~~~~l~-~~~~-----~~~~~------~~~~~~~~~~~~~ 214 (263)
T cd08567 149 FVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLA-P-DIPTVALT-EETT-----LGNLP------RAAKKLGADIWSP 214 (263)
T ss_pred HHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHC-C-CccEEEEe-cCCc-----ccCHH------HHHHHhCCcEEec
Confidence 77889999998876 399999999999999885 3 56776533 1110 00111 11111 1222333
Q ss_pred CCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCC
Q 005970 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (667)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~ 387 (667)
.+ ...++.+++.+|++|+.|++||||+ ..+|..++++| ||||+||+|++
T Consensus 215 ~~-----------~~~~~~~i~~~~~~G~~v~vwtvn~------------~~~~~~~~~~G---vdgi~TD~P~~ 263 (263)
T cd08567 215 YF-----------TLVTKELVDEAHALGLKVVPWTVND------------PEDMARLIDLG---VDGIITDYPDL 263 (263)
T ss_pred ch-----------hhcCHHHHHHHHHCCCEEEEecCCC------------HHHHHHHHHcC---CCEEEcCCCCC
Confidence 21 1225789999999999999999974 36889999888 99999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=332.76 Aligned_cols=231 Identities=15% Similarity=0.130 Sum_probs=172.9
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. +.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~-------------------g~ 59 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGAD--GVEFDLEFTKDGVPVLMHDDTVDRTTDGT-------------------GL 59 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECCCCcEEEECCCCcceecCCC-------------------ce
Confidence 6899999999999999999999999999 99999999999999999999999999943 26
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHHHHHHhhcC-C
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~-~ 250 (667)
|+++||+||++++++.++.. ...|.+ ++||||+|+|++++ +..++||+|.+.. .+++.+.+++++++ .
T Consensus 60 v~~~t~~el~~l~~~~~~~~-~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~~------~~~~~v~~~l~~~~~~ 130 (258)
T cd08573 60 VAELTWEELRKLNAAAKHRL-SSRFPG--EKIPTLEEAVKECLENNLRMIFDVKSNSS------KLVDALKNLFKKYPGL 130 (258)
T ss_pred EecCcHHHHhhCCCCCCCCC-ccccCC--CCCCCHHHHHHHHHhcCCEEEEEeCCCcH------HHHHHHHHHHHHCCCc
Confidence 99999999999999877532 234555 69999999999985 4679999996531 46778889999888 4
Q ss_pred ---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCC----CCcc---hhHHhh-cHHHHH-----------hhcc
Q 005970 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT----TNQT---YGSLLK-NLTFIK-----------TFAS 308 (667)
Q Consensus 251 ---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~----~~~~---y~~~~~-~l~~i~-----------~~a~ 308 (667)
.+++||++..|+++++.. | +.++.+ ++........ .+.. +..... -+..+. .-++
T Consensus 131 ~~~v~v~SF~~~~l~~~~~~~-p-~~~~g~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T cd08573 131 YDKAIVCSFNPIVIYKVRKAD-P-KILTGL-TWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVS 207 (258)
T ss_pred cCCEEEEECCHHHHHHHHHhC-C-CceEEE-ecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCee
Confidence 499999999999999986 3 566664 3321110000 0010 110000 000000 0122
Q ss_pred eecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHh-CCCcccceEecCC
Q 005970 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID-NGDFSVDGVLSDF 384 (667)
Q Consensus 309 ~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~-~G~~gVDGIiTD~ 384 (667)
.+++.+.. .++.+|+.+|++|++|++||||+ ..+|+++++ +| || ||||+
T Consensus 208 ~v~~~~~~-----------~~~~~v~~~~~~G~~v~vWTVn~------------~~~~~~l~~~~G---Vd-iiTD~ 257 (258)
T cd08573 208 ALLIHKDD-----------ISSAYVRYWRARGIRVIAWTVNT------------PTEKQYFAKTLN---VP-YITDS 257 (258)
T ss_pred EEEechHh-----------cCHHHHHHHHHCCCEEEEEecCC------------HHHHHHHHHHhC---CC-eecCC
Confidence 23332221 25779999999999999999975 378999998 88 99 99997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G |
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=338.19 Aligned_cols=253 Identities=16% Similarity=0.134 Sum_probs=180.7
Q ss_pred EEEEeCCCC--------CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCccccccccccccccccccc
Q 005970 93 FVVARGGFS--------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLV 164 (667)
Q Consensus 93 ~iiaHRG~~--------~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~ 164 (667)
+||||||++ +.+||||++||+.|+++|+| +||+|||+||||++||+||.+++|+|++...+
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad--~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~--------- 69 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGAD--MVEFDVQLTKDGVPVIYHDFTISVSEKSKTGS--------- 69 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCcceeeccccccc---------
Confidence 589999997 68999999999999999999 99999999999999999999999999864321
Q ss_pred CCCCCCccccccCCHHhhccccccccccCCCCCC-------------CCCCCccCCHHHHHHhhCC-CceEEeccCchhh
Q 005970 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKF-------------DGNGFQILTVQDMARQIKP-PGLWLNIQHDAFY 230 (667)
Q Consensus 165 ~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~-------------~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~ 230 (667)
++....+++|.+|||+||++++++.++..+.+.+ ...+.+||||+|+|+++++ .+++||||.+...
T Consensus 70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~ 149 (293)
T cd08572 70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLL 149 (293)
T ss_pred ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcc
Confidence 1222223589999999999999987642211110 0113689999999999864 7899999965432
Q ss_pred hhc---------CCcHHHHHHHHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHh-
Q 005970 231 AQH---------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL- 297 (667)
Q Consensus 231 ~~~---------~~~~~~~l~~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~- 297 (667)
... ...+++.+++++++++. ++++||++.+|+.+++.. | +.++++.+ .... .. ..+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~-p-~~~~~~l~-~~~~-~~---~~~~~~~~ 222 (293)
T cd08572 150 EDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQ-N-KYPVLFLT-NGGT-NE---VEHMDPRR 222 (293)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhC-c-cCCEEEEe-cCCC-Cc---ccccchhh
Confidence 210 12467888999999876 399999999999999985 3 67887633 2111 00 0000000
Q ss_pred hcHHHHHhh-----cceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhC
Q 005970 298 KNLTFIKTF-----ASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDN 372 (667)
Q Consensus 298 ~~l~~i~~~-----a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~ 372 (667)
..+..+..+ +.++.+.... +..++.+|+.+|++|+.|++|||+| |..++|+.++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~Gl~v~~wTv~~----------n~~~~~~~l~~~ 283 (293)
T cd08572 223 RSLQAAVNFALAEGLLGVVLHAED---------LLKNPSLISLVKALGLVLFTYGDDN----------NDPENVKKQKEL 283 (293)
T ss_pred hhHHHHHHHHHHCCCeEEEechHH---------hhcCcHHHHHHHHcCcEEEEECCCC----------CCHHHHHHHHHc
Confidence 012222222 2233332221 1224679999999999999999943 234789999988
Q ss_pred CCcccceEecCCC
Q 005970 373 GDFSVDGVLSDFP 385 (667)
Q Consensus 373 G~~gVDGIiTD~P 385 (667)
| |||||||+|
T Consensus 284 G---VdgIiTD~~ 293 (293)
T cd08572 284 G---VDGVIYDRV 293 (293)
T ss_pred C---CCEEEecCC
Confidence 8 999999997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=332.78 Aligned_cols=209 Identities=18% Similarity=0.172 Sum_probs=163.0
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+++|+|+ ++|. |.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~g~-v~ 61 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTH------------------GTGA-VR 61 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccC------------------CCCc-ee
Confidence 6899999999999999999999999999999999999999999999999999999 6775 99
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++|++||++|+++.++ +++||||+|+|++++... +.++||||.+... .....+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~---------------~~~iptL~evl~~~~~~~--~~l~iEiK~~~~~--~~~~~~~~~v~~~i 122 (235)
T cd08565 62 DLTLAERKALRLRDSF---------------GEKIPTLEEVLALFAPSG--LELHVEIKTDADG--TPYPGAAALAAATL 122 (235)
T ss_pred eccHHHHhcCCCCCCC---------------CCCCCCHHHHHHHhhccC--cEEEEEECCCCCC--CccHHHHHHHHHHH
Confidence 9999999999987532 378999999999997642 4799999965310 01136889999999
Q ss_pred HhcCCCCCCCceEEEEeCCHHHHHHHHhccCCcEEEEeccchhhhhH--HHHHHHH-HhhhhcCCCeeEEeCCCCCccHH
Q 005970 570 GNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALN--QTIEDIK-KFADSVVLTMSLYLKRGTSSQTQ 646 (667)
Q Consensus 570 ~~~~~~~~~~~~v~i~SFd~~~L~~~~~~p~~~~~~L~~~~~~~~~~--~~l~~~~-~~a~~i~~~~~i~~~~~~~~~~~ 646 (667)
+++++. ++++|+||++++|++++++|+++++++++........ ..+.... ..+..+++. +. ....+++
T Consensus 123 ~~~~~~----~~v~~~Sf~~~~l~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~ 193 (235)
T cd08565 123 RRHGLL----ERSVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLGGELPFLTATALKAHIVAVE----QS-LLAATWE 193 (235)
T ss_pred HhCCCc----CCEEEEECCHHHHHHHHhCCCCcEEEEeccccccccccccchhhhhhccCcEEccC----cc-cccCCHH
Confidence 999987 7999999999999999999999999998632110000 0001111 111112221 11 0123568
Q ss_pred HHHHHHHcCCcEEEEeccCC
Q 005970 647 LWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 647 ~v~~ah~~Gl~V~vWTVn~e 666 (667)
+|+++|+ |++|++||||++
T Consensus 194 ~v~~~~~-g~~v~~WTVn~~ 212 (235)
T cd08565 194 LVRAAVP-GLRLGVWTVNDD 212 (235)
T ss_pred HHHHHhC-CCEEEEEccCCH
Confidence 9999975 999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=332.85 Aligned_cols=240 Identities=20% Similarity=0.229 Sum_probs=176.7
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. ..
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d--~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~-------------------~~ 59 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGAD--VLETDVHATKDGVLVVIHDETLDRTTDGT-------------------GP 59 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeECCCCCEEEECCCccccccCCC-------------------Cc
Confidence 6899999999999999999999999999 99999999999999999999999999953 26
Q ss_pred cccCCHHhhccccccccccCCCC---CCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~---~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (667)
|.++||+||++++.+.++...+. .+...++++|||+|+|+++++..++||+|.+. ..+++.+++++++++.
T Consensus 60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~ieiK~~~------~~~~~~~~~~l~~~~~ 133 (249)
T cd08561 60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQGIRIPTLEELFEAFPDVRLNIEIKDDG------PAAAAALADLIERYGA 133 (249)
T ss_pred hhhCCHHHHhhcCcCccccCccccccccCCCCccCCCHHHHHHhCcCCcEEEEECCCc------hhHHHHHHHHHHHcCC
Confidence 89999999999998876522111 11222369999999999998889999999653 2467889999998875
Q ss_pred ---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhh-cHHH-HHhhcceecCCCccccccCCCCC
Q 005970 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK-NLTF-IKTFASGILVPKDYIWPVDESLY 325 (667)
Q Consensus 251 ---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~l~~-i~~~a~~i~~~~~~~~~~~~~~~ 325 (667)
.+++||+...|.++++.. | +.++.+ +. .+ .. ....... ++.. .......+.++... .++
T Consensus 134 ~~~~~~~Sf~~~~l~~~~~~~-p-~~~~~~-~~-~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 197 (249)
T cd08561 134 QDRVLVASFSDRVLRRFRRLC-P-RVATSA-GE-GE-VA-----AFVLASRLGLGSLYSPPYDALQIPVRY------GGV 197 (249)
T ss_pred CCcEEEEECCHHHHHHHHHHC-C-Ccceec-cH-HH-HH-----HHHHHhhcccccccCCCCcEEEcCccc------CCe
Confidence 399999999999999985 2 445443 11 00 00 0000000 0000 00001122221110 011
Q ss_pred CCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhh
Q 005970 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (667)
Q Consensus 326 l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~ 391 (667)
....+.+++.+|++|+.|++||||+. ++|+.++++| ||||+||+|+.+.++
T Consensus 198 ~~~~~~~v~~~~~~G~~v~vWTVN~~------------~~~~~l~~~g---VdgIiTD~p~~~~~~ 248 (249)
T cd08561 198 PLVTPRFVRAAHAAGLEVHVWTVNDP------------AEMRRLLDLG---VDGIITDRPDLLLEV 248 (249)
T ss_pred ecCCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEcCCHHHHHhh
Confidence 12357899999999999999999753 7899999888 999999999987654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=328.95 Aligned_cols=200 Identities=19% Similarity=0.212 Sum_probs=165.2
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|. |.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~~-v~ 61 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAG------------------VNKK-VW 61 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccC------------------CCCC-hh
Confidence 6899999999999999999999999999999999999999999999999999999 5665 99
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++||+||++++.+.++ . +++||||+|+|+.++++. +.++||||.+.. ....+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~-------------~-~~~iptL~evl~~~~~~~--~~l~iEiK~~~~----~~~~~~~~v~~~l 121 (220)
T cd08579 62 DLTLEELKKLTIGENG-------------H-GAKIPSLDEYLALAKGLK--QKLLIELKPHGH----DSPDLVEKFVKLY 121 (220)
T ss_pred hCCHHHHhcCcCccCC-------------C-CCcCCCHHHHHHHhhccC--CeEEEEECCCCC----CCHHHHHHHHHHH
Confidence 9999999999987531 2 378999999999998742 479999997653 1246889999999
Q ss_pred HhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHHHH
Q 005970 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQLW 648 (667)
Q Consensus 570 ~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~~v 648 (667)
+++++. ++++|+||+++.++.+++. |++++++++....... . ...++.+++. ....++++|
T Consensus 122 ~~~~~~----~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~-----~--~~~~~~~~~~-------~~~~~~~~v 183 (220)
T cd08579 122 KQNLIE----NQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNL-----P--KTNVDFYSIE-------YSTLNKEFI 183 (220)
T ss_pred HHcCCC----cCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcc-----c--ccCceEEeee-------hhhcCHHHH
Confidence 999987 7999999999999999999 9999999986432211 0 0111222221 112346999
Q ss_pred HHHHHcCCcEEEEeccCC
Q 005970 649 RSTHITRELVLMELLQNS 666 (667)
Q Consensus 649 ~~ah~~Gl~V~vWTVn~e 666 (667)
+.+|++|++|++||||++
T Consensus 184 ~~~~~~G~~v~~wtvn~~ 201 (220)
T cd08579 184 RQAHQNGKKVYVWTVNDP 201 (220)
T ss_pred HHHHHCCCEEEEEcCCCH
Confidence 999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. |
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=327.74 Aligned_cols=219 Identities=19% Similarity=0.209 Sum_probs=167.1
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. |+.
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d--~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~------------------~~~ 60 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGAD--AIETDVHLTKDGVVVISHDPNLKRCFGKD------------------GLI 60 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCcEEEeCCCccceeeCCC------------------CCE
Confidence 6899999999999999999999999999 99999999999999999999999999843 137
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC-----CCceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-----PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~-----~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
|+++||+||++++++.. + .++||||+|+|++++ +..++||+|..... ..+++.+.++++++
T Consensus 61 v~~~t~~eL~~l~~~~~---------~-~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~----~~~~~~v~~~i~~~ 126 (234)
T cd08570 61 IDDSTWDELSHLRTIEE---------P-HQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP----EILFKLIAEMLAVK 126 (234)
T ss_pred eccCCHHHHhhcccccC---------C-CccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH----HHHHHHHHHHHHhc
Confidence 99999999999988632 2 358999999999984 45799999954211 24566777778776
Q ss_pred C-------CceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhh---cceecCCCcccc
Q 005970 249 V-------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF---ASGILVPKDYIW 318 (667)
Q Consensus 249 ~-------~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~---a~~i~~~~~~~~ 318 (667)
+ .++++||++..++.+++.. | +.++++...... . ...+..+ +.++.+.+..+.
T Consensus 127 ~~~~~~~~~v~i~Sf~~~~l~~l~~~~-p-~~~~~~l~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T cd08570 127 PDLDFWRERIILGLWHLDFLKYGKEVL-P-GFPVFHIGFSLD-----------Y----ARHFLNYSEKLVGISMHFVSLW 189 (234)
T ss_pred CCcccccCCEEEEeCCHHHHHHHHHhC-C-CCCeEEEEcCHH-----------H----HHHHhccccccceEEeeeehhh
Confidence 4 2389999999999999985 3 566664221100 0 0111111 223333221110
Q ss_pred ccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCC
Q 005970 319 PVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (667)
Q Consensus 319 ~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P 385 (667)
. . .++++++.+|++|++|++||||++ .+|++++++| |||||||+|
T Consensus 190 -----~-~-~~~~~v~~~~~~gl~v~~wTvn~~------------~~~~~l~~~g---vdgiiTD~P 234 (234)
T cd08570 190 -----G-P-FGQAFLPELKKNGKKVFVWTVNTE------------EDMRYAIRLG---VDGVITDDP 234 (234)
T ss_pred -----c-c-cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEeCCC
Confidence 0 0 257899999999999999999754 7899999888 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip |
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=336.46 Aligned_cols=252 Identities=15% Similarity=0.131 Sum_probs=175.3
Q ss_pred EEEEeCCCC-------CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccC
Q 005970 93 FVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVN 165 (667)
Q Consensus 93 ~iiaHRG~~-------~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~ 165 (667)
+.|||||++ +.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+|+..+.. +
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad--~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~---------~ 69 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGAD--MVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDS---------D 69 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCeeEeeccCcccc---------C
Confidence 468999984 89999999999999999999 99999999999999999999999999853211 1
Q ss_pred CCCCCccccccCCHHhhccccccccccCCCCCCCC--------CCCccCCHHHHHHhhC-CCceEEeccCchhhhhc---
Q 005970 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG--------NGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQH--- 233 (667)
Q Consensus 166 g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~--------~~~~iptL~e~l~~~~-~~~~~ieiK~~~~~~~~--- 233 (667)
+.+..++.|.++||+||++++++.++......|.+ .+.+||||+|+|++++ +.+++||||.+......
T Consensus 70 ~~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~ 149 (290)
T cd08607 70 RDDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWE 149 (290)
T ss_pred ccceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccc
Confidence 11122357999999999999987543222222321 1358999999999986 46799999965421110
Q ss_pred --------CCcHHHHHHHHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhh-cHH
Q 005970 234 --------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK-NLT 301 (667)
Q Consensus 234 --------~~~~~~~l~~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~l~ 301 (667)
...+++.+++.+.+++. ++++||++.+|..+++.. | ..++.+ +..... . ....+.+... .+.
T Consensus 150 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~-p-~~~~~~-l~~~~~-~--~~~~~~~~~~~~~~ 223 (290)
T cd08607 150 SELFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQ-N-KYPVLF-LTQGKT-Q--RYPEFMDLRTRTFE 223 (290)
T ss_pred cccccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhC-c-CCCEEE-EecCCC-C--ccccccchHHHhHH
Confidence 01366778888887764 499999999999999986 3 577775 332111 0 0000111100 011
Q ss_pred HHHhh-----cceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEec--cCCCCcccCCCCChHHHHHHHHhCCC
Q 005970 302 FIKTF-----ASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGD 374 (667)
Q Consensus 302 ~i~~~-----a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~e~~~li~~G~ 374 (667)
....+ +.++.+... ++...+.+|+.+|++|++|++||| |+ .++|++++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~G- 281 (290)
T cd08607 224 IAVNFAQAEELLGVNLHSE---------DLLKDPSQIELAKSLGLVVFCWGDDLND------------PENRKKLKELG- 281 (290)
T ss_pred HHHHHHHHcCCceeEechh---------hhhcChHHHHHHHHcCCEEEEECCCCCC------------HHHHHHHHHcC-
Confidence 11111 122222111 122357899999999999999999 53 47899999888
Q ss_pred cccceEecCCC
Q 005970 375 FSVDGVLSDFP 385 (667)
Q Consensus 375 ~gVDGIiTD~P 385 (667)
|||||||++
T Consensus 282 --VdgIiTD~~ 290 (290)
T cd08607 282 --VDGLIYDRI 290 (290)
T ss_pred --CCEEEecCC
Confidence 999999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism. |
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=338.53 Aligned_cols=235 Identities=17% Similarity=0.131 Sum_probs=168.5
Q ss_pred eEEEecCCC-------CCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccc
Q 005970 409 LVISKNGAS-------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (667)
Q Consensus 409 ~iiaHRG~~-------~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~ 481 (667)
+.|||||++ +.+||||++||+.|+++|||+||+|||+||||++||+||.+|+|+++... ..++.
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~---------~~~~~ 71 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKG---------DSDRD 71 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCcc---------ccCcc
Confidence 368999984 89999999999999999999999999999999999999999999987210 00000
Q ss_pred cCCCcccccCCHHHHcccCCCccCCcccccccCCCCCC---------CCccccCHHHHHHHHHhcCCcceEEEEeecchh
Q 005970 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNK---------NAGKFMKLSDFLEMAKNANSLSGVLISIENAVY 552 (667)
Q Consensus 482 ~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~---------~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~ 552 (667)
.+....|.++||+||++|+++.+..+ + .+.|. .+++||||+|+|+.++.. ++++||||.+..
T Consensus 72 ~~~~~~v~~lt~~eL~~l~~~~~~~~--~----~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~lnIEiK~~~~ 142 (290)
T cd08607 72 DLLEVPVKDLTYEQLKLLKLFHISAL--K----VKEYKSVEEDEDPPEHQPFPTLSDVLESVPED---VGFNIEIKWPQQ 142 (290)
T ss_pred ceEEEecccCCHHHHhhcCccccccc--c----cccccccccccccccccCCCCHHHHHHhCCCc---cceEEEEecCcc
Confidence 11122499999999999998753211 1 11121 147899999999999764 579999997542
Q ss_pred hhhh----------hcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccch------hhhh
Q 005970 553 LAEK----------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI------RDAL 615 (667)
Q Consensus 553 ~~~~----------~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~------~~~~ 615 (667)
.... ....+++.+++++.++++. ++++|+|||+++|..++++ |++++++|+.... .+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~ 218 (290)
T cd08607 143 QKDGSWESELFTYFDRNLFVDIILKIVLEHAGK----RRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLR 218 (290)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHhCCC----CCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchH
Confidence 1100 0113778999999998876 6999999999999999999 9999999986421 0111
Q ss_pred HHHHHHHHHhhhhcCCCeeEEeCCCCCccHHHHHHHHHcCCcEEEEec--cC
Q 005970 616 NQTIEDIKKFADSVVLTMSLYLKRGTSSQTQLWRSTHITRELVLMELL--QN 665 (667)
Q Consensus 616 ~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTV--n~ 665 (667)
...+.....++...++............++++|+.+|++|+.|++||| |+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~ 270 (290)
T cd08607 219 TRTFEIAVNFAQAEELLGVNLHSEDLLKDPSQIELAKSLGLVVFCWGDDLND 270 (290)
T ss_pred HHhHHHHHHHHHHcCCceeEechhhhhcChHHHHHHHHcCCEEEEECCCCCC
Confidence 111222233444444331111112233467999999999999999999 76
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism. |
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=325.80 Aligned_cols=210 Identities=22% Similarity=0.246 Sum_probs=169.9
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
++||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|.
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~~~- 61 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTN------------------GKGY- 61 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccC------------------CCCc-
Confidence 478999999999999999999999999999999999999999999999999999998 6665
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
|.++||+||++++.+..+. +.+. +++||||+|+|+.+++.+ +.++||+|.+.... ..+++.+++
T Consensus 62 i~~~t~~el~~l~~~~~~~---------~~~~-~~~iptL~evl~~~~~~~--~~l~leiK~~~~~~----~~~~~~l~~ 125 (230)
T cd08563 62 VKDLTLEELKKLDAGSWFD---------EKFT-GEKIPTLEEVLDLLKDKD--LLLNIEIKTDVIHY----PGIEKKVLE 125 (230)
T ss_pred hhhCCHHHHHhcCCCCccC---------ccCC-CCcCCCHHHHHHHHHhcC--cEEEEEECCCCCcC----hhHHHHHHH
Confidence 9999999999999876431 2333 478999999999998642 47999999765421 357899999
Q ss_pred HHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHH
Q 005970 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQ 646 (667)
Q Consensus 568 ~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~ 646 (667)
+++++++. ++++++||+++.|..+++. |++++++++...... ...++...++. .+.+. ....+++
T Consensus 126 ~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--------~~~~~~~~~~~-~v~~~-~~~~~~~ 191 (230)
T cd08563 126 LVKEYNLE----DRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD--------PKDYAKKIGAD-SLHPD-FKLLTEE 191 (230)
T ss_pred HHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--------HHHHHHHhCCE-EEccC-chhcCHH
Confidence 99999977 7999999999999999999 999999988642211 11222222221 12221 1123579
Q ss_pred HHHHHHHcCCcEEEEeccCC
Q 005970 647 LWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 647 ~v~~ah~~Gl~V~vWTVn~e 666 (667)
+++.+|++|++|++||||+.
T Consensus 192 ~i~~~~~~g~~v~~Wtvn~~ 211 (230)
T cd08563 192 VVEELKKRGIPVRLWTVNEE 211 (230)
T ss_pred HHHHHHHCCCEEEEEecCCH
Confidence 99999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. |
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=334.73 Aligned_cols=247 Identities=15% Similarity=0.186 Sum_probs=176.4
Q ss_pred CEEEEeCCCCCCCC--------ccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccc
Q 005970 92 PFVVARGGFSGIFP--------DSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (667)
Q Consensus 92 ~~iiaHRG~~~~~p--------ENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~ 163 (667)
+.||||||+++.+| |||++||+.|+++|+| +||+|||+||||++||+||.+++|| +..
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d--~vE~DV~lTkDg~~VV~HD~~l~rt-~~~----------- 67 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGAS--YVEVDVQLTKDLVPVIYHDFLVSET-GTD----------- 67 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCC--EEEEEEEEccCCEEEEeCCCeeccC-CCC-----------
Confidence 67999999999999 9999999999999999 9999999999999999999999995 421
Q ss_pred cCCCCCCccccccCCHHhhcccccc---ccccCCCCCCC----CC--CCccCCHHHHHHhhCC-CceEEeccCchhhhhc
Q 005970 164 VNGVPTPGWFSIDYTLNDLSNIILN---QGVYSRTDKFD----GN--GFQILTVQDMARQIKP-PGLWLNIQHDAFYAQH 233 (667)
Q Consensus 164 ~~g~~~~g~~v~d~t~~el~~l~~~---~~~~~~~~~~~----~~--~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~ 233 (667)
+.|.++||+||++++.. .++ ....|. |. ..+||||+|+|+.++. .+++||||.+......
T Consensus 68 --------~~v~~lt~~eL~~ld~~~~~~~~--~~~~~~~~~~g~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~ 137 (286)
T cd08606 68 --------VPIHDLTLEQFLHLSRMKYTVDF--KKKGFKGNSRGHSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAE 137 (286)
T ss_pred --------CccccCCHHHHHhhhcccccccc--cccCCCCcccccccccCCCcHHHHHHhCCCccceEEEEecCCcchhh
Confidence 26999999999999743 222 122232 21 1369999999999864 6899999975422110
Q ss_pred C----------CcHHHHHHHHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcH
Q 005970 234 N----------LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300 (667)
Q Consensus 234 ~----------~~~~~~l~~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l 300 (667)
. ..+++.+++++++++. ++++||++..|+.+++.. | ..++.+ +..... .+....... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~-p-~~~~~~-l~~~~~-~~~~~~~~~----~~ 209 (286)
T cd08606 138 EEEVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQ-P-GYPVLF-LTEAGK-APDMDVRAA----SL 209 (286)
T ss_pred hcccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhC-c-CCCEEE-EeCCCC-CccCCchhh----cH
Confidence 0 1356788999998875 489999999999999986 3 577775 332111 000000000 01
Q ss_pred HHHHhh-----cceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCc
Q 005970 301 TFIKTF-----ASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDF 375 (667)
Q Consensus 301 ~~i~~~-----a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~ 375 (667)
.....+ +.++.+.... +...+.+|+.+|++|++|++|||.+ |+.++|++++++|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~Gl~v~~WTv~~----------n~~~~~~~l~~~G-- 268 (286)
T cd08606 210 QEAIRFAKQWNLLGLVSAAEP---------LVMCPRLIQVVKRSGLVCVSYGVLN----------NDPENAKTQVKAG-- 268 (286)
T ss_pred HHHHHHHHHCCCeEEEechHH---------hhhChHHHHHHHHCCcEEEEECCcc----------CCHHHHHHHHHcC--
Confidence 111111 2222221111 1224679999999999999999932 1247899999888
Q ss_pred ccceEecCCCCCchhhh
Q 005970 376 SVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 376 gVDGIiTD~P~~~~~~l 392 (667)
|||||||+|+.+++.+
T Consensus 269 -VdgIiTD~p~~~~~~~ 284 (286)
T cd08606 269 -VDAVIVDSVLAIRRGL 284 (286)
T ss_pred -CCEEEECCHHHHHHHh
Confidence 9999999999887765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp |
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=324.63 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=166.4
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+++|+|| ++|. |.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~------------------~~~~-i~ 61 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG------------------GDGA-VS 61 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccC------------------CCcc-hh
Confidence 6899999999999999999999999999999999999999999999999999999 6665 99
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++||+||++++++.++ ...+. +++||||+|+|+.+++.+ +.++||||.+. ....+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~---------~~~~~-~~~iptL~evl~~~~~~~--~~l~ieiK~~~-----~~~~~~~~~~~~~ 124 (233)
T cd08582 62 DLTLAELRKLDIGSWK---------GESYK-GEKVPTLEEYLAIVPKYG--KKLFIEIKHPR-----RGPEAEEELLKLL 124 (233)
T ss_pred hCCHHHHhcCCCCccc---------CCCCC-CCcCCCHHHHHHHHHhcC--ceEEEEeCCCc-----cCccHHHHHHHHH
Confidence 9999999999987643 23344 389999999999998852 47999999751 1246889999999
Q ss_pred HhcC-CCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHHH
Q 005970 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQL 647 (667)
Q Consensus 570 ~~~~-~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~~ 647 (667)
++++ +. ++++++||++..|..+++. |++++++++......... .. .+...++. .+.+......++++
T Consensus 125 ~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~---~~---~~~~~~~~-~i~~~~~~~~~~~~ 193 (233)
T cd08582 125 KESGLLP----EQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDP---RP---LAKSGGAA-GLDLSYEKKLNPAF 193 (233)
T ss_pred HHcCCCC----CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccch---hH---HHHhhCce-EEcccccccCCHHH
Confidence 9995 44 6999999999999999999 999999998642110000 00 11111221 11111111245799
Q ss_pred HHHHHHcCCcEEEEeccCC
Q 005970 648 WRSTHITRELVLMELLQNS 666 (667)
Q Consensus 648 v~~ah~~Gl~V~vWTVn~e 666 (667)
|+.+|++|++|++||||+.
T Consensus 194 v~~~~~~G~~v~~wTvn~~ 212 (233)
T cd08582 194 IKALRDAGLKLNVWTVDDA 212 (233)
T ss_pred HHHHHHCCCEEEEEeCCCH
Confidence 9999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=338.92 Aligned_cols=230 Identities=19% Similarity=0.213 Sum_probs=165.1
Q ss_pred ccCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccccccccc
Q 005970 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (667)
Q Consensus 403 ~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~ 482 (667)
...+++.||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+||... .++++
T Consensus 18 ~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~-~~~~~--------- 87 (316)
T cd08610 18 TLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGE-VQPES--------- 87 (316)
T ss_pred ccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCC-ccccc---------
Confidence 34566889999999999999999999999999999999999999999999999999999999432 12222
Q ss_pred CCCcccccCCHHHHcccCCCccCC----ccccc-c--cCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhh
Q 005970 483 GSGIFSFSLIWDEIQTLIPQISNP----YFKFK-L--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (667)
Q Consensus 483 ~~g~~i~d~t~~EL~~L~~~~~~p----~~~~~-~--~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~ 555 (667)
..|. |.++||+||+++++|.++. |...+ . +....+.+ ++||||+|+|+++++.+ ..++||||.+....
T Consensus 88 ~~~~-V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~-e~IPTLeEvL~~~~~~~--~~l~IEIK~~~~~~- 162 (316)
T cd08610 88 ACEN-PAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN-QSIPKLSNFLRLAEKEN--KLVIFDLYRPPPKH- 162 (316)
T ss_pred cccc-hhhCCHHHHhhCCCCCccCcccccccccccccccccccCC-CCCCCHHHHHHHhHhcC--ceEEEEeCCCcccC-
Confidence 2343 9999999999999997652 10000 0 00113343 89999999999998742 36999999642110
Q ss_pred hhcccHHHHHHHHH-HhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCe
Q 005970 556 KQGMSVTNSVMEAL-GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTM 633 (667)
Q Consensus 556 ~~~~~~~~~v~~~l-~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~ 633 (667)
.....+++.+++++ +++++. +++++ ||+++++..+++. |++++++.... . +..+. ..++.
T Consensus 163 ~~~~~~~~~v~~~i~~~~~~~----~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~-----~---~~~l~----~~~~~- 224 (316)
T cd08610 163 PYRHTWIRRVLEVILNEVGIE----QHLVL-WLPAHDRQYVQSVAPGFKQHVGRKV-----P---IETLL----KNNIS- 224 (316)
T ss_pred cchhHHHHHHHHHHHHHcCCC----CCEEE-EcCHHHHHHHHHHCcchhhhhcccc-----c---HHHHH----HcCCe-
Confidence 01124778888886 677886 56655 6999999999999 99986653221 0 11111 12221
Q ss_pred eEEeCCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 634 SLYLKRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 634 ~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.+.+.. ...++++|+++|++|++|++||||++
T Consensus 225 ~l~~~~-~~l~~~~v~~a~~~Gl~V~vWTVNd~ 256 (316)
T cd08610 225 ILNLAY-KKLFSNDIRDYKAANIHTNVYVINEP 256 (316)
T ss_pred EEccch-hhCCHHHHHHHHHCCCEEEEECCCCH
Confidence 222211 12356999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. |
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=335.24 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=174.8
Q ss_pred eEEEecCCC--------CCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccccccc
Q 005970 409 LVISKNGAS--------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480 (667)
Q Consensus 409 ~iiaHRG~~--------~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~ 480 (667)
+||||||++ +.+||||++||+.|+++|||+||+|||+||||++||+||.+|+|+++.... .++
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~---------~~~ 71 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG---------SDE 71 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc---------ccc
Confidence 589999997 789999999999999999999999999999999999999999999984321 111
Q ss_pred ccCCCcccccCCHHHHcccCCCccCCccc---cc---ccCC---CCCCCCccccCHHHHHHHHHhcCCcceEEEEeecch
Q 005970 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFK---FK---LFRN---PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551 (667)
Q Consensus 481 ~~~~g~~i~d~t~~EL~~L~~~~~~p~~~---~~---~~~~---~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~ 551 (667)
..+.+..|.++|++||++|+++.+.+... ++ .... ..+. +++||||+|+|+.++.. ++++||||.+.
T Consensus 72 ~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~evL~~~~~~---~~l~IEiK~~~ 147 (293)
T cd08572 72 GELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDE-HDPFPTLQEVLEQVPKD---LGFNIEIKYPQ 147 (293)
T ss_pred CcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhh-ccCCCCHHHHHHhCCCc---cceEEEEecCC
Confidence 11223359999999999999986532100 00 0000 0122 37899999999999764 57999999755
Q ss_pred hhhh--------hhcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchh-----hhhHH
Q 005970 552 YLAE--------KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-----DALNQ 617 (667)
Q Consensus 552 ~~~~--------~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~-----~~~~~ 617 (667)
.... .....+++.++++++++++. ++++++|||+++|..+++. |+++++++++.... +....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~----~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 223 (293)
T cd08572 148 LLEDGEGELTPYFERNAFVDTILAVVFEHAGG----RRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRR 223 (293)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhCCC----CcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhh
Confidence 3210 00125789999999999987 7999999999999999999 99999999864221 11122
Q ss_pred HHHHHHHhhhhcCCCeeEEeCCCCCccHHHHHHHHHcCCcEEEEec--cC
Q 005970 618 TIEDIKKFADSVVLTMSLYLKRGTSSQTQLWRSTHITRELVLMELL--QN 665 (667)
Q Consensus 618 ~l~~~~~~a~~i~~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTV--n~ 665 (667)
.+..+..++...++.........+..++++|+.+|++|+.|++||| |+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~ 273 (293)
T cd08572 224 SLQAAVNFALAEGLLGVVLHAEDLLKNPSLISLVKALGLVLFTYGDDNND 273 (293)
T ss_pred hHHHHHHHHHHCCCeEEEechHHhhcCcHHHHHHHHcCcEEEEECCCCCC
Confidence 2344445555555442111111123456999999999999999999 65
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=323.64 Aligned_cols=232 Identities=20% Similarity=0.170 Sum_probs=171.3
Q ss_pred EEEEeCCCCCC-CCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 93 FVVARGGFSGI-FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 93 ~iiaHRG~~~~-~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d--~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~------------------- 59 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGAD--IVEIDVRRTKDGVLVLMHDDTLDRTTNGK------------------- 59 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCCccccCCC-------------------
Confidence 48999999999 999999999999999999 99999999999999999999999999943
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (667)
+.|.++||+||++++++.++ ..|.+ ++||||+|+|+++++ ..++||+|.+ ..+.+++++++++.
T Consensus 60 ~~v~~~t~~el~~l~~~~~~----~~~~~--~~iptL~evl~~~~~~~~l~iEiK~~---------~~~~~~~~~~~~~~ 124 (240)
T cd08566 60 GKVSDLTLAEIRKLRLKDGD----GEVTD--EKVPTLEEALAWAKGKILLNLDLKDA---------DLDEVIALVKKHGA 124 (240)
T ss_pred CchhhCcHHHHHhCCcCCCc----CCCCC--CCCCCHHHHHHhhhcCcEEEEEECch---------HHHHHHHHHHHcCC
Confidence 27999999999999998874 33444 699999999999865 6799999964 24668888888876
Q ss_pred c---eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCccccccCCCCCC
Q 005970 251 N---YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYL 326 (667)
Q Consensus 251 ~---~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~~~~~~l 326 (667)
. +++||++..++.+++.. | .+++.+ +.... . ...... ...+.. .+.++.+.+...
T Consensus 125 ~~~v~~~sf~~~~l~~~~~~~-p-~~~~~~-l~~~~--~----~~~~~~---~~~~~~~~~~~~~~~~~~~--------- 183 (240)
T cd08566 125 LDQVIFKSYSEEQAKELRALA-P-EVMLMP-IVRDA--E----DLDEEE---ARAIDALNLLAFEITFDDL--------- 183 (240)
T ss_pred cccEEEEECCHHHHHHHHHhC-C-CCEEEE-EEccC--c----chhHHH---HhcccccceEEEEEecccc---------
Confidence 3 99999999999999985 3 566664 32211 0 000000 000000 012222211110
Q ss_pred CCChHHHHHHHHc-CCeEEEEeccCCCCcc-cCCCCChHHHHHHHHhCCCcccceEecCCC
Q 005970 327 LPHTTIVLDAHKE-RLEVFASNFANDIPIS-FNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (667)
Q Consensus 327 ~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~-~~~~~d~~~e~~~li~~G~~gVDGIiTD~P 385 (667)
.....+..+|+. |++|++||+|++.... -....++..+|++++++| ||||+||+|
T Consensus 184 -~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---vd~I~TD~P 240 (240)
T cd08566 184 -DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELVDAG---VDVIQTDRP 240 (240)
T ss_pred -ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHHHcC---CCEEecCCC
Confidence 135678888887 9999999998631100 001113468899999888 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. |
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=326.91 Aligned_cols=207 Identities=16% Similarity=0.064 Sum_probs=160.4
Q ss_pred eeEEEecCCCCC---CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCC
Q 005970 408 LLVISKNGASGD---YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (667)
Q Consensus 408 ~~iiaHRG~~~~---~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~ 484 (667)
..+|||||+++. +||||++||++|++.|+ +||+|||+||||++||+||.+|+|+|| ++
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~------------------~~ 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTG------------------VE 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcC------------------CC
Confidence 457899999874 79999999999999999 899999999999999999999999999 66
Q ss_pred CcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHH
Q 005970 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (667)
Q Consensus 485 g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (667)
|. |.++||+||++|+++. . +++||||+|+|+.++.. +.++||||.+.. ....+++.
T Consensus 65 ~~-v~~~t~~eL~~l~~~~---------------~-~~~iPtL~evl~~~~~~---~~l~iEiK~~~~----~~~~l~~~ 120 (237)
T cd08585 65 GR-VEELTAAELRALRLLG---------------T-DEHIPTLDEVLELVAGR---VPLLIELKSCGG----GDGGLERR 120 (237)
T ss_pred Cc-cccCCHHHHhcCCCCC---------------C-CCCCCCHHHHHHHhccC---ceEEEEEccCCc----cchHHHHH
Confidence 75 9999999999999863 1 37899999999999754 479999997543 12468889
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHH-----HHHHHHhhhhcCCCeeEEeC
Q 005970 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQT-----IEDIKKFADSVVLTMSLYLK 638 (667)
Q Consensus 565 v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~-----l~~~~~~a~~i~~~~~i~~~ 638 (667)
+++++++++ .+++|+|||+++|+++++. |++++++++........... ...+. .....++. .+.+.
T Consensus 121 v~~~l~~~~------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 192 (237)
T cd08585 121 VLAALKDYK------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALF-SNLLTRPD-FIAYH 192 (237)
T ss_pred HHHHHHhcC------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhh-hhhccCCC-EEEeC
Confidence 999998763 4899999999999999999 99999999864211100000 00110 01112332 12221
Q ss_pred CCCCccHHHHHHHHHc-CCcEEEEeccCC
Q 005970 639 RGTSSQTQLWRSTHIT-RELVLMELLQNS 666 (667)
Q Consensus 639 ~~~~~~~~~v~~ah~~-Gl~V~vWTVn~e 666 (667)
.. ..+.++|+.+|++ |++|++||||++
T Consensus 193 ~~-~~~~~~v~~~~~~~G~~v~vWTVnd~ 220 (237)
T cd08585 193 LD-DLPNPFVTLARALLGMPVIVWTVRTE 220 (237)
T ss_pred hh-hCcCHHHHHHHHhcCCcEEEEeCCCH
Confidence 11 2345899999999 999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=330.32 Aligned_cols=225 Identities=18% Similarity=0.199 Sum_probs=165.6
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
|+||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+|| ++|.
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------~~~~- 61 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTG------------------GSGL- 61 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeC------------------CceE-
Confidence 579999999999999999999999999999999999999999999999999999999 6675
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
|.++|++||++++++.++..........+.+. +++||||+|+|+.+++ +.++||||.+.. ..+++.+++
T Consensus 62 v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~----~~l~iEiK~~~~------~~~~~~v~~ 130 (264)
T cd08575 62 VSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG-DGRIPTLEEVFKAFPD----TPINIDIKSPDA------EELIAAVLD 130 (264)
T ss_pred EecCCHHHHHhcccCCccccCCCCcccccCCC-CCcCCcHHHHHHhCCC----CeEEEEECCCCH------HHHHHHHHH
Confidence 99999999999999865421100000111233 4799999999999865 379999997542 268899999
Q ss_pred HHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhh---HHH-H--HHHHHhhhhcCCC-eeE----
Q 005970 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL---NQT-I--EDIKKFADSVVLT-MSL---- 635 (667)
Q Consensus 568 ~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~---~~~-l--~~~~~~a~~i~~~-~~i---- 635 (667)
+++++++. ++++|+|||+++|++++++ |+++++++......... ... . ...+..+..+++. ..+
T Consensus 131 ~i~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (264)
T cd08575 131 LLEKYKRE----DRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETFT 206 (264)
T ss_pred HHHhcccc----ceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEec
Confidence 99999987 7999999999999999999 99888776542110000 000 0 0000000001100 000
Q ss_pred -----EeCCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 636 -----YLKRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 636 -----~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
...+....++++|+.+|++|++|++||||+.
T Consensus 207 ~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~ 242 (264)
T cd08575 207 LGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDE 242 (264)
T ss_pred cccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCH
Confidence 0001123467999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. |
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=338.88 Aligned_cols=226 Identities=20% Similarity=0.218 Sum_probs=162.0
Q ss_pred ceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCc
Q 005970 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (667)
Q Consensus 407 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~ 486 (667)
+|.||||||+++.+||||++||++|+++|||+||+|||+||||+|||+||.+|+||||.... ++++. ..
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~-v~~~~----------~~ 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRV-FPERQ----------YE 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCCc-ccccc----------cc
Confidence 36899999999999999999999999999999999999999999999999999999993210 11110 01
Q ss_pred ccccCCHHHHcccCCCccC----Cccccc-ccC-C-CCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcc
Q 005970 487 FSFSLIWDEIQTLIPQISN----PYFKFK-LFR-N-PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (667)
Q Consensus 487 ~i~d~t~~EL~~L~~~~~~----p~~~~~-~~~-~-~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 559 (667)
.++++||+||++|++|.++ ||+... .++ + ..+. +++||||+|+|+++++.+ ..++||||.+.... ....
T Consensus 70 ~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~~--~~l~iEIK~~~~~~-~~~~ 145 (351)
T cd08608 70 DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAG-NQSVCSLAELLELAKRYN--ASVLLNLRRPPPNH-PYHQ 145 (351)
T ss_pred ccccCCHHHHhhCCCCcccccCCccccccccccccccccC-CCCCCCHHHHHHHHHhcC--CeEEEEECCCcccC-cchh
Confidence 2578999999999999764 222111 111 1 1344 489999999999998752 36999999653110 1123
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeC
Q 005970 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLK 638 (667)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~ 638 (667)
.+++.+++++.++++.. ++++++||+. ++.+|++ |+++++.... .....+ ..+++. .+.+.
T Consensus 146 ~~~~~v~~~i~~~~~~~---~~vi~sSf~~--~~~vr~l~P~~~~~~~~~--------~~~~~~----~~~~~~-~l~~~ 207 (351)
T cd08608 146 SWINLTLKTILASGIPQ---EQVMWTPDWQ--RKLVRKVAPGFQQTSGEK--------LPVASL----RERGIT-RLNLR 207 (351)
T ss_pred HHHHHHHHHHHHhCCCc---CeEEEEcchH--HHHHHHHCCCCeeecccc--------chHHHH----HHcCCe-EEccc
Confidence 67788999999998752 5788899976 4789999 9998753211 011111 122332 22222
Q ss_pred CCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 639 RGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 639 ~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.. ..++++|+.+|++|++|++||||++
T Consensus 208 ~~-~lt~~~v~~~~~~Gl~V~vWTVN~~ 234 (351)
T cd08608 208 YT-QASAQEIRDYSASNLSVNLYTVNEP 234 (351)
T ss_pred hh-hcCHHHHHHHHHCCCEEEEEecCCH
Confidence 11 2356999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti |
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=330.93 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=166.3
Q ss_pred EEEecCCCC-C----------CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccccc
Q 005970 410 VISKNGASG-D----------YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIP 478 (667)
Q Consensus 410 iiaHRG~~~-~----------~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~ 478 (667)
||||||+.. . +||||++||++|++.|||+||+|||+||||+|||+||.+|+|+++-.
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~------------ 69 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGE------------ 69 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCC------------
Confidence 799999765 3 45999999999999999999999999999999999999999998810
Q ss_pred ccccCCCcccccCCHHHHcccCCCccCCccc----ccccCCCC---C--CCCccccCHHHHHHHHHhcCCcceEEEEeec
Q 005970 479 EIMAGSGIFSFSLIWDEIQTLIPQISNPYFK----FKLFRNPK---N--KNAGKFMKLSDFLEMAKNANSLSGVLISIEN 549 (667)
Q Consensus 479 ~~~~~~g~~i~d~t~~EL~~L~~~~~~p~~~----~~~~~~~~---~--~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~ 549 (667)
...|. |.++||+||++|+++.++.... ......+. + ..+++||||+|+|+.++.. ++++||||.
T Consensus 70 ---~~~~~-V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~l~IEiK~ 142 (282)
T cd08605 70 ---VESSR-IRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPS---LGFNIELKF 142 (282)
T ss_pred ---cCccc-hhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCC---ccEEEEEec
Confidence 01454 9999999999999975431100 00000010 1 1247999999999999654 479999996
Q ss_pred chhhh--hhhcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccch---hhhhHHHHHHHH
Q 005970 550 AVYLA--EKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIK 623 (667)
Q Consensus 550 ~~~~~--~~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~---~~~~~~~l~~~~ 623 (667)
+.... ...-..++++++++++++++. ++++|+|||+++|+.++++ |++++++|++... .+.....+....
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~ 218 (282)
T cd08605 143 GDDNKTEAEELVRELRAILAVCKQHAPG----RRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAI 218 (282)
T ss_pred CccccchHHHHHHHHHHHHHHHHhcCCC----CeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHH
Confidence 53210 000012457889999999886 7999999999999999999 9999999986421 111111222333
Q ss_pred HhhhhcCCCeeEEeCCC-CCccHHHHHHHHHcCCcEEEEec--cC
Q 005970 624 KFADSVVLTMSLYLKRG-TSSQTQLWRSTHITRELVLMELL--QN 665 (667)
Q Consensus 624 ~~a~~i~~~~~i~~~~~-~~~~~~~v~~ah~~Gl~V~vWTV--n~ 665 (667)
.++..+++. .+.+... +..++++|+++|++|+.|++||| |+
T Consensus 219 ~~~~~~~~~-~~~~~~~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~ 262 (282)
T cd08605 219 QVALEGGLQ-GIVSEVKVLLRNPTAVSLVKASGLELGTYGKLNND 262 (282)
T ss_pred HHHHHcCCc-eEEecHHHhhcCcHHHHHHHHcCcEEEEeCCCCCC
Confidence 344444553 2222212 22467999999999999999999 86
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. |
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=330.75 Aligned_cols=230 Identities=14% Similarity=0.139 Sum_probs=167.3
Q ss_pred eeEEEecCCCCCCC--------chhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccc
Q 005970 408 LLVISKNGASGDYP--------SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPE 479 (667)
Q Consensus 408 ~~iiaHRG~~~~~P--------ENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~ 479 (667)
+.||||||+++.+| |||++||++|+++|||+||+|||+||||++||+||.+|+|+ |
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~--------------- 65 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-G--------------- 65 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-C---------------
Confidence 57999999999999 99999999999999999999999999999999999999995 6
Q ss_pred cccCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCC---ccccCHHHHHHHHHhcCCcceEEEEeecchhhhhh
Q 005970 480 IMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNA---GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK 556 (667)
Q Consensus 480 ~~~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~---~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~ 556 (667)
++|. |.++|++||++|+.+...+. +........+.|. ++||||+|+|+.++.. ++++||||.+......
T Consensus 66 ---~~~~-v~~lt~~eL~~ld~~~~~~~-~~~~~~~~~~~g~~~~~~iptL~evl~~~~~~---~~l~IEiK~~~~~~~~ 137 (286)
T cd08606 66 ---TDVP-IHDLTLEQFLHLSRMKYTVD-FKKKGFKGNSRGHSIQAPFTTLEELLKKLPKS---VGFNIELKYPMLHEAE 137 (286)
T ss_pred ---CCCc-cccCCHHHHHhhhccccccc-ccccCCCCcccccccccCCCcHHHHHHhCCCc---cceEEEEecCCcchhh
Confidence 4564 99999999999985421110 0000011111221 4699999999999754 4799999975421100
Q ss_pred ---------hcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhh---hhHHHHHHHH
Q 005970 557 ---------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD---ALNQTIEDIK 623 (667)
Q Consensus 557 ---------~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~---~~~~~l~~~~ 623 (667)
....+++.++++|+++++. ++++|+|||+++|+.++++ |+++++++++..... ..........
T Consensus 138 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 213 (286)
T cd08606 138 EEEVAPVAIELNAFVDTVLEKVFDYGAG----RNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEAI 213 (286)
T ss_pred hcccccchhHHHHHHHHHHHHHHhcCCC----CceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHHH
Confidence 0014678999999999886 7999999999999999999 999999998642110 1111122223
Q ss_pred HhhhhcCCCeeEEeCCCCCccHHHHHHHHHcCCcEEEEec--cC
Q 005970 624 KFADSVVLTMSLYLKRGTSSQTQLWRSTHITRELVLMELL--QN 665 (667)
Q Consensus 624 ~~a~~i~~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTV--n~ 665 (667)
.++...+.............++++|+.+|++|+.|++||| |+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~ 257 (286)
T cd08606 214 RFAKQWNLLGLVSAAEPLVMCPRLIQVVKRSGLVCVSYGVLNND 257 (286)
T ss_pred HHHHHCCCeEEEechHHhhhChHHHHHHHHCCcEEEEECCccCC
Confidence 3444444432111112123457999999999999999999 76
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp |
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=333.03 Aligned_cols=224 Identities=18% Similarity=0.186 Sum_probs=160.9
Q ss_pred CceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCC
Q 005970 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (667)
Q Consensus 406 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g 485 (667)
..+.||||||+++.+||||++||++|+++|||+||+|||+||||++||+||++|+|+||.... ++.+ ..
T Consensus 25 ~~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~-~~~~---------~~- 93 (315)
T cd08609 25 PKPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDV-FPGR---------DA- 93 (315)
T ss_pred CCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCC-cccc---------cc-
Confidence 357999999999999999999999999999999999999999999999999999999993210 0000 00
Q ss_pred cccccCCHHHHcccCCCccCCcc----cc-cc--cCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhc
Q 005970 486 IFSFSLIWDEIQTLIPQISNPYF----KF-KL--FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQG 558 (667)
Q Consensus 486 ~~i~d~t~~EL~~L~~~~~~p~~----~~-~~--~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~ 558 (667)
.+|.++||+||++|++|.++... .. .. +....+. +++||||+|+|+.+++.+ ..++||||...... ...
T Consensus 94 ~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~~--~~l~IEIK~~~~~~-~~~ 169 (315)
T cd08609 94 AGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREAD-NQTVPSLSELLDLAKKHN--VSIMFDLRNENNSH-VFY 169 (315)
T ss_pred ccHhhCCHHHHhhCCCCcccCcccccccccccccccccccC-CCCCCCHHHHHHHHHhcC--CEEEEEeCCCCCCC-ccH
Confidence 13899999999999998754210 00 00 0001234 489999999999998752 36999999753100 011
Q ss_pred ccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEe
Q 005970 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYL 637 (667)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~ 637 (667)
..+++.++++++++++.. .+++ +|++..++.++++ |+++++++... . . ....+..+++.
T Consensus 170 ~~f~~~vl~~i~~~~~~~---~~v~--~~~~~~l~~~~~~~P~~~~~~~~~~-------~-~--~~~~~~~i~~~----- 229 (315)
T cd08609 170 SSFVFYTLETILKLGIPP---DKVW--WLPDEYRHDVMKMEPGFKQVYGRQK-------E-M--LMDGGNFMNLP----- 229 (315)
T ss_pred HHHHHHHHHHHHHcCCCc---ceEE--EeCHHHHHHHHHhCcCceeecccch-------h-h--HhcCCeEEecc-----
Confidence 367889999999998752 3444 4578999999999 99998764321 0 0 01112222221
Q ss_pred CCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 638 KRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 638 ~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
. ...++++|+.+|++|++|++||||++
T Consensus 230 -~-~~l~~~~v~~~~~~G~~v~vWTVNd~ 256 (315)
T cd08609 230 -Y-QDLSALEIKELRKDNVSVNLWVVNEP 256 (315)
T ss_pred -c-ccCCHHHHHHHHHCCCEEEEECCCCH
Confidence 1 12356899999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia |
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=317.54 Aligned_cols=208 Identities=16% Similarity=0.138 Sum_probs=160.2
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCC-Cccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS-GIFS 488 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~-g~~i 488 (667)
|+||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|| ++ + .|
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~------------------~~~~-~v 61 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFG------------------KDGL-II 61 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeC------------------CCCC-Ee
Confidence 6899999999999999999999999999999999999999999999999999999 56 4 49
Q ss_pred ccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhc--CCcceEEEEeecchhhhhhhcccHHHHHH
Q 005970 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA--NSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (667)
Q Consensus 489 ~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~--~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (667)
+++|++||++|+++.. +.++||||+|+|++++.. +. +.++||||..... ..+++.+.
T Consensus 62 ~~~t~~eL~~l~~~~~---------------~~~~iptL~evl~~~~~~~~~~-~~l~iEiK~~~~~-----~~~~~~v~ 120 (234)
T cd08570 62 DDSTWDELSHLRTIEE---------------PHQPMPTLKDVLEWLVEHELPD-VKLMLDIKRDNDP-----EILFKLIA 120 (234)
T ss_pred ccCCHHHHhhcccccC---------------CCccCCcHHHHHHHHHhcCCCC-eEEEEEECCCCCH-----HHHHHHHH
Confidence 9999999999998631 136899999999999764 22 4799999964321 25677888
Q ss_pred HHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHh---hhhcCCCeeEEeCCCCC
Q 005970 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF---ADSVVLTMSLYLKRGTS 642 (667)
Q Consensus 567 ~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~---a~~i~~~~~i~~~~~~~ 642 (667)
+++++++......++++|+||+++.|+.+++. |+++++++..... ....+..+ +..+++. +......
T Consensus 121 ~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~ 191 (234)
T cd08570 121 EMLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD------YARHFLNYSEKLVGISMH---FVSLWGP 191 (234)
T ss_pred HHHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH------HHHHHhccccccceEEee---eehhhcc
Confidence 88888753211116999999999999999999 9999999864311 01111111 1111111 1000001
Q ss_pred ccHHHHHHHHHcCCcEEEEeccCC
Q 005970 643 SQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 643 ~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.++++++.+|++|++|++||||++
T Consensus 192 ~~~~~v~~~~~~gl~v~~wTvn~~ 215 (234)
T cd08570 192 FGQAFLPELKKNGKKVFVWTVNTE 215 (234)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCH
Confidence 357999999999999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip |
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=326.48 Aligned_cols=214 Identities=18% Similarity=0.114 Sum_probs=164.4
Q ss_pred CceeEEEecCCCCC--CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc--------cccCCCCccCCccc
Q 005970 406 ANLLVISKNGASGD--YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN--------STNAAQSKFNSITT 475 (667)
Q Consensus 406 ~~~~iiaHRG~~~~--~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r--------~t~v~~~~~~~~~~ 475 (667)
.+|+||||||+++. +||||++||++|++.|||+||+|||+||||++||+||.++++ +++
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~----------- 70 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDS----------- 70 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCC-----------
Confidence 45899999999988 999999999999999999999999999999999999987665 444
Q ss_pred cccccccCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhh
Q 005970 476 TIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (667)
Q Consensus 476 ~~~~~~~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~ 555 (667)
+.|. |.++|++||++++++.++.-. ......+. +++||||+|+|+.++.. ++++||||.+.
T Consensus 71 -------~~~~-v~~~t~~el~~l~~~~~~~~~---~~~~~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~~---- 131 (265)
T cd08564 71 -------GFKN-INDLSLDEITRLHFKQLFDEK---PCGADEIK-GEKIPTLEDVLVTFKDK---LKYNIELKGRE---- 131 (265)
T ss_pred -------Cccc-hhhCcHHHHhhcccCcccccC---cccccccC-CccCCCHHHHHHHhccC---cEEEEEeCCCc----
Confidence 5665 999999999999998754210 00001133 48999999999999874 58999999654
Q ss_pred hhcccHHHHHHHHHHhcCCCCCCCceEEEEeCCH-HHHHHHHhc-cC---CcEEEEeccchhhhhHHHHHHHHHhhhhcC
Q 005970 556 KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-SVLMKLREK-TS---YELVYKVKENIRDALNQTIEDIKKFADSVV 630 (667)
Q Consensus 556 ~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~-~~L~~~~~~-p~---~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~ 630 (667)
..+++.++++|+++++. ++++|+||++ ++|.+++++ |+ ++++++++..... ...+....+...+
T Consensus 132 ---~~~~~~v~~~l~~~~~~----~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~ 200 (265)
T cd08564 132 ---VGLGERVLNLVEKYGMI----LQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP----SPLDFLEQAKYYN 200 (265)
T ss_pred ---hhHHHHHHHHHHHcCCC----CCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc----ccccHHHHHHhcC
Confidence 25789999999999987 7999999999 999999999 98 9999998642100 0011111222223
Q ss_pred CCeeEEeCCCCCccHHHHHHHHHcCCcEEEEe
Q 005970 631 LTMSLYLKRGTSSQTQLWRSTHITRELVLMEL 662 (667)
Q Consensus 631 ~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWT 662 (667)
+. .+.+... ..++++|+.+|++|++|++||
T Consensus 201 ~~-~v~~~~~-~~~~~~v~~~~~~Gl~v~~wT 230 (265)
T cd08564 201 AT-WVNFSYD-FWTEEFVKKAHENGLKVMTYF 230 (265)
T ss_pred Cc-eeeechh-hhhHHHHHHHHHcCCEEEEec
Confidence 32 1222111 134689999999999999999
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=323.63 Aligned_cols=233 Identities=17% Similarity=0.126 Sum_probs=168.3
Q ss_pred eEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCC-ccCCccccccccccCCCcc
Q 005970 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS-KFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 409 ~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~-~~~~~~~~~~~~~~~~g~~ 487 (667)
.||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+|+.... .|+ ....+ .
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~---------~~~~~-~ 71 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWL---------PYEGP-A 71 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcc---------cccCc-c
Confidence 689999999999999999999999999999999999999999999999999987641100 000 00124 4
Q ss_pred cccCCHHHHcccCCCccCCccccc--ccCCCCCCCCccccCHHHHHHHHHhcC-CcceEEEEeecchhhh--hhhcccHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFK--LFRNPKNKNAGKFMKLSDFLEMAKNAN-SLSGVLISIENAVYLA--EKQGMSVT 562 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~--~~~~~~~~~~~~iPtL~EvL~~~~~~~-~~~~l~iEiK~~~~~~--~~~~~~~~ 562 (667)
|+++||+||++|+.+.+++....+ .+....+. +++||||+|+|+.++..+ ..++++||+|.+.... ......++
T Consensus 72 v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 150 (263)
T cd08567 72 LYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVP-GTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEFV 150 (263)
T ss_pred hhcCCHHHHHhcCCCccccCcCcccCCCccccCc-cccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHHH
Confidence 999999999999988653110000 00011122 278999999999998742 1257999999754310 00123688
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccch-hhhhHHHHHHHHHhhhhcCCCeeEEeCCC
Q 005970 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI-RDALNQTIEDIKKFADSVVLTMSLYLKRG 640 (667)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~-~~~~~~~l~~~~~~a~~i~~~~~i~~~~~ 640 (667)
+.++++|+++++. ++++|+||+++.|+.++++ |++++++++.... .. +.. .+...++. .+.+. .
T Consensus 151 ~~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~-----~~~---~~~~~~~~-~~~~~-~ 216 (263)
T cd08567 151 DAVLAVIRKAGLE----DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTLGN-----LPR---AAKKLGAD-IWSPY-F 216 (263)
T ss_pred HHHHHHHHHcCCC----CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcccC-----HHH---HHHHhCCc-EEecc-h
Confidence 9999999999987 7999999999999999999 9999999986421 01 111 11222332 12211 1
Q ss_pred CCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 641 TSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 641 ~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
...++++++.+|++|++|++||||+.
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtvn~~ 242 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTVNDP 242 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecCCCH
Confidence 22456999999999999999999973
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=325.98 Aligned_cols=246 Identities=16% Similarity=0.110 Sum_probs=170.4
Q ss_pred EEEeCCCCC-C----------CCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCccccccccccccccccc
Q 005970 94 VVARGGFSG-I----------FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162 (667)
Q Consensus 94 iiaHRG~~~-~----------~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~ 162 (667)
||||||+.. . +||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++..
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad--~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~--------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGAD--FVEFDVQVTRDGVPVIWHDDFIVVERGGEV--------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCC--EEEEEEEECcCCeEEEECCCceecccCCCc---------
Confidence 799999655 2 469999999999999999 999999999999999999999999988310
Q ss_pred ccCCCCCCccccccCCHHhhccccccccccCCC----------CC----CCCCCCccCCHHHHHHhhCC-CceEEeccCc
Q 005970 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT----------DK----FDGNGFQILTVQDMARQIKP-PGLWLNIQHD 227 (667)
Q Consensus 163 ~~~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~----------~~----~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~ 227 (667)
. .+.|.++||+||++|+++.++.... +. +...+++||||+|+|++++. .+++||||.+
T Consensus 71 -~------~~~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~ 143 (282)
T cd08605 71 -E------SSRIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFG 143 (282)
T ss_pred -C------ccchhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecC
Confidence 0 1379999999999999976542100 00 01014699999999999854 5799999965
Q ss_pred hhhhh---cCCcHHHHHHHHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHH
Q 005970 228 AFYAQ---HNLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLT 301 (667)
Q Consensus 228 ~~~~~---~~~~~~~~l~~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~ 301 (667)
..... .-..+++.+++++++++. ++|+|||+.+|++++++. | ..++.+ ++............ ..+.....
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~-p-~~~~~~-L~~~~~~~~~~~~~-~~~~~~~~ 219 (282)
T cd08605 144 DDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQ-S-LYPVMF-LTDCGPYTHNDPRR-NSIEAAIQ 219 (282)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcC-c-cCCEEE-EecCCCccccCchh-hhHHHHHH
Confidence 32110 001134667888888765 499999999999999986 3 677776 43211100000000 00000011
Q ss_pred HHHh-hcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEec--cCCCCcccCCCCChHHHHHHHHhCCCcccc
Q 005970 302 FIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSVD 378 (667)
Q Consensus 302 ~i~~-~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~e~~~li~~G~~gVD 378 (667)
.... .+.++.+.+.. +...+++|+.+|++|++|++||| |+ .++|++++++| ||
T Consensus 220 ~~~~~~~~~~~~~~~~---------l~~~~~~v~~~~~~Gl~v~vWTv~~n~------------~~~~~~l~~~G---Vd 275 (282)
T cd08605 220 VALEGGLQGIVSEVKV---------LLRNPTAVSLVKASGLELGTYGKLNND------------AEAVERQADLG---VD 275 (282)
T ss_pred HHHHcCCceEEecHHH---------hhcCcHHHHHHHHcCcEEEEeCCCCCC------------HHHHHHHHHcC---CC
Confidence 1111 23344443321 11246799999999999999998 64 37899999888 99
Q ss_pred eEecCCC
Q 005970 379 GVLSDFP 385 (667)
Q Consensus 379 GIiTD~P 385 (667)
|||||++
T Consensus 276 gIiTD~~ 282 (282)
T cd08605 276 GVIVDHV 282 (282)
T ss_pred EEEeCCC
Confidence 9999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. |
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=317.43 Aligned_cols=204 Identities=22% Similarity=0.209 Sum_probs=162.9
Q ss_pred eEEEecCCCCC-CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 409 ~iiaHRG~~~~-~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
+||||||+++. +||||++||++|+++|+|+||+|||+||||++||+||.+|+|+|| ++|.
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~~- 61 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTN------------------GKGK- 61 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccC------------------CCCc-
Confidence 48999999999 999999999999999999999999999999999999999999999 6775
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
|.++||+||++++++.++ ..+. +++||||+|+|+.+++. +.++||||.. .++.+++
T Consensus 62 v~~~t~~el~~l~~~~~~----------~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~----------~~~~~~~ 117 (240)
T cd08566 62 VSDLTLAEIRKLRLKDGD----------GEVT-DEKVPTLEEALAWAKGK---ILLNLDLKDA----------DLDEVIA 117 (240)
T ss_pred hhhCcHHHHHhCCcCCCc----------CCCC-CCCCCCHHHHHHhhhcC---cEEEEEECch----------HHHHHHH
Confidence 999999999999998643 2344 38999999999999875 4799999964 2467899
Q ss_pred HHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHH
Q 005970 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQ 646 (667)
Q Consensus 568 ~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~ 646 (667)
+++++++. ++++|+||++++|+.++++ |++++++++...... ..........+++. .+.+.........
T Consensus 118 ~~~~~~~~----~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 187 (240)
T cd08566 118 LVKKHGAL----DQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDL-----DEEEARAIDALNLL-AFEITFDDLDLPP 187 (240)
T ss_pred HHHHcCCc----ccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcch-----hHHHHhcccccceE-EEEEeccccccHH
Confidence 99999987 7999999999999999999 999999998642111 00011122222322 2222111102457
Q ss_pred HHHHHHHc-CCcEEEEeccC
Q 005970 647 LWRSTHIT-RELVLMELLQN 665 (667)
Q Consensus 647 ~v~~ah~~-Gl~V~vWTVn~ 665 (667)
.+.++|++ |++|++||||+
T Consensus 188 ~~~~~~~~~Gl~v~~wTvn~ 207 (240)
T cd08566 188 LFDELLRALGIRVWVNTLGD 207 (240)
T ss_pred HHHHHHHhCCCEEEEECCCc
Confidence 88888888 99999999995
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. |
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=316.92 Aligned_cols=258 Identities=12% Similarity=0.127 Sum_probs=180.6
Q ss_pred cccccCCCCCEEEEeCCCCCC----------------------CCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEc
Q 005970 83 RWQTLTGDPPFVVARGGFSGI----------------------FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICF 140 (667)
Q Consensus 83 ~~~~~~~~~~~iiaHRG~~~~----------------------~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~ 140 (667)
.+.......|+||||||++.. |||||++||+.|++.|+| +||+|||+||||++||+
T Consensus 15 ~~~~~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lVV~ 92 (309)
T cd08613 15 LLAPPPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGAD--VVELDVHPTKDGEFAVF 92 (309)
T ss_pred hhccCCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCeEEEE
Confidence 334445668999999998664 499999999999999999 99999999999999999
Q ss_pred cCCCCcccccccccccccccccccCCCCCCccccccCCHHhhccccccccccCC-CC--CCCCC-CCccCCHHHHHHhhC
Q 005970 141 PDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR-TD--KFDGN-GFQILTVQDMARQIK 216 (667)
Q Consensus 141 HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~t~~el~~l~~~~~~~~~-~~--~~~~~-~~~iptL~e~l~~~~ 216 (667)
||.+|+|+|++. +.|+|+||+||++|+++.++... .. .|.+. ..+||||+|+|++++
T Consensus 93 HD~tL~R~T~g~-------------------g~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~~~ 153 (309)
T cd08613 93 HDWTLDCRTDGS-------------------GVTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAAFP 153 (309)
T ss_pred ecCccccccCCC-------------------CchhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHhcC
Confidence 999999999843 27999999999999998876321 11 23321 247999999999998
Q ss_pred CCceEEeccCchhhhhcCCcHHHHHHHHHhhcCCc--eEecCC--HHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcc
Q 005970 217 PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN--YISSPE--VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQT 292 (667)
Q Consensus 217 ~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~~--~i~SFd--~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (667)
+.+++||||.+. ....+.+.+++++++.. .+.||+ ...|++++++. | +.++. ..... .
T Consensus 154 ~~~l~IEiK~~~------~~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~l~-P-~~~~~----s~~~~-----~- 215 (309)
T cd08613 154 DRRFLINFKSDD------AAEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRELT-P-DLRTL----SKASM-----K- 215 (309)
T ss_pred CCcEEEEeCCCC------ccHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHHHC-C-CCcee----cccch-----H-
Confidence 889999999653 12356788888888763 566776 78899999985 2 33332 11100 0
Q ss_pred hhHHhhcHHHHHhhcceecCCC----ccccccCCCCCCCC-ChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHH
Q 005970 293 YGSLLKNLTFIKTFASGILVPK----DYIWPVDESLYLLP-HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYL 367 (667)
Q Consensus 293 y~~~~~~l~~i~~~a~~i~~~~----~~~~~~~~~~~l~~-~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~ 367 (667)
...+..+.....+..|.. ...+|......+.. +..|++++|+.|.+|++|.-... ..+..+.|+.++|.
T Consensus 216 ----~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~--~~~~~~~d~~~~~~ 289 (309)
T cd08613 216 ----DCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTG--GEFSEGFDTPEDLK 289 (309)
T ss_pred ----HHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccC--CcccCCCCCHHHHH
Confidence 001111111112233322 12233332222333 67899999999999999931100 00111236679999
Q ss_pred HHHhCCCcccceEecCCCCCc
Q 005970 368 SFIDNGDFSVDGVLSDFPLTP 388 (667)
Q Consensus 368 ~li~~G~~gVDGIiTD~P~~~ 388 (667)
++.+.| +|||+||+|+.+
T Consensus 290 ~l~~~~---~~gi~T~r~~~l 307 (309)
T cd08613 290 RLPEGF---TGYIWTNKIEAL 307 (309)
T ss_pred HHHhhC---CCeEEeCCHhhc
Confidence 999887 999999999865
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet. |
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=316.50 Aligned_cols=217 Identities=18% Similarity=0.164 Sum_probs=162.6
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|. |.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~~-i~ 61 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTD------------------GTGP-VA 61 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccC------------------CCCc-hh
Confidence 6899999999999999999999999999999999999999999999999999999 5665 99
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++||+||++|+++.++.... +......+. ++++|||+|+|+.+++ +.++||+|.+. ..+++++++++
T Consensus 62 ~~t~~el~~l~~~~~~~~~~-~~~~~~~~~-~~~iptL~evl~~~~~----~~~~ieiK~~~-------~~~~~~~~~~l 128 (249)
T cd08561 62 DLTLAELRRLDAGYHFTDDG-GRTYPYRGQ-GIRIPTLEELFEAFPD----VRLNIEIKDDG-------PAAAAALADLI 128 (249)
T ss_pred hCCHHHHhhcCcCccccCcc-ccccccCCC-CccCCCHHHHHHhCcC----CcEEEEECCCc-------hhHHHHHHHHH
Confidence 99999999999875431000 000001223 3799999999999865 37999999754 25789999999
Q ss_pred HhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhh--cCCCeeEEeCC---CCCc
Q 005970 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADS--VVLTMSLYLKR---GTSS 643 (667)
Q Consensus 570 ~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~--i~~~~~i~~~~---~~~~ 643 (667)
+++++. ++++|+||++++|..+++. |+++++++..... .+ ........... .+......+.. ....
T Consensus 129 ~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (249)
T cd08561 129 ERYGAQ----DRVLVASFSDRVLRRFRRLCPRVATSAGEGEVA-AF---VLASRLGLGSLYSPPYDALQIPVRYGGVPLV 200 (249)
T ss_pred HHcCCC----CcEEEEECCHHHHHHHHHHCCCcceeccHHHHH-HH---HHHhhcccccccCCCCcEEEcCcccCCeecC
Confidence 999876 7999999999999999999 9999998764310 00 00000000000 01110001111 0134
Q ss_pred cHHHHHHHHHcCCcEEEEeccCC
Q 005970 644 QTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 644 ~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
++++|+.+|++|+.|++||||+.
T Consensus 201 ~~~~v~~~~~~G~~v~vWTVN~~ 223 (249)
T cd08561 201 TPRFVRAAHAAGLEVHVWTVNDP 223 (249)
T ss_pred CHHHHHHHHHCCCEEEEEecCCH
Confidence 57999999999999999999973
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=307.49 Aligned_cols=225 Identities=16% Similarity=0.086 Sum_probs=164.2
Q ss_pred CEEEEeCCCCCC---CCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCC
Q 005970 92 PFVVARGGFSGI---FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (667)
Q Consensus 92 ~~iiaHRG~~~~---~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~ 168 (667)
+.+|||||+++. +||||++||+.|++.|+ +||+|||+||||++||+||.+|+|+|++.
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~---~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~---------------- 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY---GIELDVQLTADGEVVVFHDDNLKRLTGVE---------------- 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC---cEEEEeeECCCCCEEEeccchHhhhcCCC----------------
Confidence 458999999874 79999999999999995 79999999999999999999999999843
Q ss_pred CCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHHHHhh
Q 005970 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (667)
Q Consensus 169 ~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~ 247 (667)
+.|.++||+||++++++. . +++||||+|+|+++++ ..++||+|.+.. ....+++.+.+++++
T Consensus 65 ---~~v~~~t~~eL~~l~~~~---------~--~~~iPtL~evl~~~~~~~~l~iEiK~~~~---~~~~l~~~v~~~l~~ 127 (237)
T cd08585 65 ---GRVEELTAAELRALRLLG---------T--DEHIPTLDEVLELVAGRVPLLIELKSCGG---GDGGLERRVLAALKD 127 (237)
T ss_pred ---CccccCCHHHHhcCCCCC---------C--CCCCCCHHHHHHHhccCceEEEEEccCCc---cchHHHHHHHHHHHh
Confidence 269999999999999863 1 3699999999999864 579999996532 123577888888887
Q ss_pred cCC-ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchh-HHhhcHH-HHHhhcceecCCCccccccCCCC
Q 005970 248 VVV-NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYG-SLLKNLT-FIKTFASGILVPKDYIWPVDESL 324 (667)
Q Consensus 248 ~~~-~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~-~~~~~l~-~i~~~a~~i~~~~~~~~~~~~~~ 324 (667)
++. ++++||++..|+++++.. | +.++.+ +..... ......... .+...+. .....++.+.+.+.
T Consensus 128 ~~~~v~i~SF~~~~l~~l~~~~-p-~~~~~~-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 194 (237)
T cd08585 128 YKGPAAIMSFDPRVVRWFRKLA-P-GIPRGQ-LSEGSN-DEADPAFWNEALLSALFSNLLTRPDFIAYHLD--------- 194 (237)
T ss_pred cCCCEEEEECCHHHHHHHHHHC-C-CCCEEE-EecCCc-ccccccchhHHHHHhhhhhhccCCCEEEeChh---------
Confidence 753 489999999999999985 3 677775 332110 000000000 0000000 00001222222211
Q ss_pred CCCCChHHHHHHHHc-CCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEec
Q 005970 325 YLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (667)
Q Consensus 325 ~l~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiT 382 (667)
..+.++|+.+|++ |++|++||||++ ++|++++++| +++||-
T Consensus 195 --~~~~~~v~~~~~~~G~~v~vWTVnd~------------~~~~~l~~~G---~~~i~~ 236 (237)
T cd08585 195 --DLPNPFVTLARALLGMPVIVWTVRTE------------EDIARLKQYA---DNIIFE 236 (237)
T ss_pred --hCcCHHHHHHHHhcCCcEEEEeCCCH------------HHHHHHHHhC---CeeEeC
Confidence 1146799999999 999999999753 7899999887 999984
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=309.69 Aligned_cols=242 Identities=24% Similarity=0.306 Sum_probs=187.7
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (667)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|||+..
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad--~iE~Dv~lTkDg~lVv~HD~~~drt~~~~------------------ 64 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLDRTTNGL------------------ 64 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCC--EEEeeccCccCCcEEEecccchhhhccCc------------------
Confidence 5899999999999999999999999999999 99999999999999999999999999943
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC-CCceEEeccCchhhhhcCCcHHHHHHHHHhhcC
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~-~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~ 249 (667)
..+.++|++|+++++.+.+. ...+ + ..+|+|+|+++.+. +.++++|+|.+........ +...++..+.+..
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~---~~~~-~--~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~~~-~~~~~~~~~~~~~ 136 (257)
T COG0584 65 -GTVRDLTLAELKRLDAGSFR---IPTF-G--EEIPTLEELLEATGRKIGLYIEIKSPGFHPQEGK-ILAALLALLKRYG 136 (257)
T ss_pred -cccccCChhhhcCcccCccc---CCCC-C--CccCCHHHHHHHhcccCCeEEEecCCCcccchhh-hHHHHHHHHHHhc
Confidence 25779999999999965542 3344 3 59999999999884 6899999998765433221 3455666655543
Q ss_pred ------CceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHh--hcHHHHHhhcceecCCCccccccC
Q 005970 250 ------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL--KNLTFIKTFASGILVPKDYIWPVD 321 (667)
Q Consensus 250 ------~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~--~~l~~i~~~a~~i~~~~~~~~~~~ 321 (667)
.++++||+...+.++++..+ ..++++.+ .... . |.++. ..+..+..++.++++.+..+.+.
T Consensus 137 ~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~-~~~~------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 205 (257)
T COG0584 137 GTAADDRVILSSFDHAALKRIKRLAP--DLPLGLLL-DATD------Q-YDWMELPRALKEVALYADGVGPDWAMLAEL- 205 (257)
T ss_pred ccCCCCceEEEecCHHHHHHHHHhCc--CCceEEEE-cccc------h-hhhhhccchhhHHHhhhcccCcccceeccc-
Confidence 34999999999999999863 57777633 2210 0 22221 14666777888888766544321
Q ss_pred CCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhh
Q 005970 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (667)
Q Consensus 322 ~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~ 393 (667)
.+.++..+|..|+.|++||||++ +.+..+.+.| ||||+||+|+.+.+.+.
T Consensus 206 -------~~~~v~~~~~~gl~v~~~tv~~~------------~~~~~~~~~g---vd~i~td~p~~~~~~~~ 255 (257)
T COG0584 206 -------LTELVDDAHAAGLKVHVWTVNEE------------DDIRLLLEAG---VDGLITDFPDLAVAFLN 255 (257)
T ss_pred -------ccHHHHHHHhCCCeEEEEecCcH------------HHHHHHHHcC---CCEEEcCCHHHHHHhhc
Confidence 35699999999999999999865 3378888777 99999999998877653
|
|
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=306.27 Aligned_cols=225 Identities=11% Similarity=0.169 Sum_probs=161.4
Q ss_pred EEEeCCC--CCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 94 VVARGGF--SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 94 iiaHRG~--~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
+|||||+ ++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+.+... ...
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~---------------~~~ 63 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYR--VFEVDLSLTSDGVLVARHSWDESLLKQLGL---------------PTS 63 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCCEEEEECCcCchhhhcCC---------------ccc
Confidence 4899996 788999999999999999999 999999999999999999999988633110 001
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC---CceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~---~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
..+.++|++||++++.. + +++||||+|+|+++++ ..++||+|.... .....++..+++.++++
T Consensus 64 ~~i~~~t~~el~~~~~~----------~--~~~iptL~evl~~~~~~~~~~l~iEiK~~~~--~~~~~~~~~l~~~~~~~ 129 (237)
T cd08583 64 KNTKPLSYEEFKSKKIY----------G--KYTPMDFKDVIDLLKKYPDVYIVTDTKQDDD--NDIKKLYEYIVKEAKEV 129 (237)
T ss_pred ccccCCCHHHHhhcccc----------C--CCCCCCHHHHHHHHHhCCCeEEEEEecCCCc--ccHHHHHHHHHHHHHhh
Confidence 25889999999987643 2 3699999999999853 468999995432 11113556788888775
Q ss_pred C--C---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhh-cceecCCCccccccCC
Q 005970 249 V--V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-ASGILVPKDYIWPVDE 322 (667)
Q Consensus 249 ~--~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~~~~~~~ 322 (667)
+ + ++++||++..|+.+++.. | .....+.+..... ...... ...+..+ +..+.+.+..
T Consensus 130 ~~~~~~~v~~~SF~~~~L~~~~~~~-p-~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~------ 192 (237)
T cd08583 130 DPDLLDRVIPQIYNEEMYEAIMSIY-P-FKSVIYTLYRQDS------IRLDEI---IAFCYENGIKAVTISKNY------ 192 (237)
T ss_pred cccccceeEEEecCHHHHHHHHHhC-C-CcceeeEeccccc------cchHHH---HHHHHHcCCcEEEechhh------
Confidence 2 3 489999999999999985 3 2233332211100 000000 1111211 3334443321
Q ss_pred CCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCC
Q 005970 323 SLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (667)
Q Consensus 323 ~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~ 386 (667)
.++.+++.+|++|++|++||||++ .+|++++++| |||||||+|.
T Consensus 193 -----~~~~~v~~~~~~Gl~v~vwTVn~~------------~~~~~l~~~G---VdgiiTD~~~ 236 (237)
T cd08583 193 -----VNDKLIEKLNKAGIYVYVYTINDL------------KDAQEYKKLG---VYGIYTDFLT 236 (237)
T ss_pred -----cCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCCCC
Confidence 147899999999999999999753 7899999888 9999999985
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=301.24 Aligned_cols=211 Identities=9% Similarity=0.090 Sum_probs=155.9
Q ss_pred EEEecCC--CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 410 VISKNGA--SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 410 iiaHRG~--~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
+|||||+ ++.+||||++||++|++.|||+||+|||+||||++||+||.+++|+.+.. ....+.
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g--------------~~~~~~- 65 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLG--------------LPTSKN- 65 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcC--------------Cccccc-
Confidence 4899996 78899999999999999999999999999999999999999998863310 001343
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
+.++|++||++++.. . +++||||+|+|++++..+. +.++||||..... ....++..+++
T Consensus 66 i~~~t~~el~~~~~~----------------~-~~~iptL~evl~~~~~~~~-~~l~iEiK~~~~~---~~~~~~~~l~~ 124 (237)
T cd08583 66 TKPLSYEEFKSKKIY----------------G-KYTPMDFKDVIDLLKKYPD-VYIVTDTKQDDDN---DIKKLYEYIVK 124 (237)
T ss_pred ccCCCHHHHhhcccc----------------C-CCCCCCHHHHHHHHHhCCC-eEEEEEecCCCcc---cHHHHHHHHHH
Confidence 899999999987643 2 3789999999999986422 4789999964321 11246678899
Q ss_pred HHHhc--CCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCcc
Q 005970 568 ALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQ 644 (667)
Q Consensus 568 ~l~~~--~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~ 644 (667)
.++++ ++. +|++|+|||+++|+.++++ |....+++..... ...+.....++..+++. .+.+... ..+
T Consensus 125 ~~~~~~~~~~----~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 194 (237)
T cd08583 125 EAKEVDPDLL----DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQD----SIRLDEIIAFCYENGIK-AVTISKN-YVN 194 (237)
T ss_pred HHHhhccccc----ceeEEEecCHHHHHHHHHhCCCcceeeEecccc----ccchHHHHHHHHHcCCc-EEEechh-hcC
Confidence 99886 355 7999999999999999999 9866666543210 00111222333444443 2222211 235
Q ss_pred HHHHHHHHHcCCcEEEEeccCC
Q 005970 645 TQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 645 ~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
+++|+++|++|++|++||||++
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~~ 216 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTINDL 216 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCCH
Confidence 7999999999999999999974
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=298.67 Aligned_cols=219 Identities=22% Similarity=0.286 Sum_probs=172.7
Q ss_pred ceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCc
Q 005970 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (667)
Q Consensus 407 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~ 486 (667)
.++||||||+++.+||||++||++|+++|+|+||+|||+||||++||+||.+++||++ +.|.
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~------------------~~~~ 66 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN------------------GLGT 66 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhcc------------------Cccc
Confidence 5799999999999999999999999999999999999999999999999999999998 6665
Q ss_pred ccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhccc-HHHHH
Q 005970 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMS-VTNSV 565 (667)
Q Consensus 487 ~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~-~~~~v 565 (667)
+.++|++|+++++.+.+. .+.+ .+.+|||+|+++.+ +. .+++++|||.+..... .. .+..+
T Consensus 67 -~~~~~~~~~~~~~~~~~~---------~~~~--~~~ip~l~~~l~~~-~~--~~~l~ieiK~~~~~~~---~~~~~~~~ 128 (257)
T COG0584 67 -VRDLTLAELKRLDAGSFR---------IPTF--GEEIPTLEELLEAT-GR--KIGLYIEIKSPGFHPQ---EGKILAAL 128 (257)
T ss_pred -cccCChhhhcCcccCccc---------CCCC--CCccCCHHHHHHHh-cc--cCCeEEEecCCCcccc---hhhhHHHH
Confidence 889999999999965432 2334 38999999999999 42 1589999998775321 12 45666
Q ss_pred HHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccch---hhhhHHHHHHHHHhhhhcCCCeeEEeCCCC
Q 005970 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIKKFADSVVLTMSLYLKRGT 641 (667)
Q Consensus 566 ~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~---~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~ 641 (667)
+..+.+..... ..++++++||++..+..+++. |.+++++++.... ....+..+..+..++..+++.......
T Consensus 129 ~~~~~~~~~~~-~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--- 204 (257)
T COG0584 129 LALLKRYGGTA-ADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWAMLAE--- 204 (257)
T ss_pred HHHHHHhcccC-CCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhccchhhHHHhhhcccCcccceecc---
Confidence 66666664311 126999999999999999999 9999999998641 122234455566777776665222210
Q ss_pred CccHHHHHHHHHcCCcEEEEeccCC
Q 005970 642 SSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 642 ~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
..+..+..+|..|+.|++||||++
T Consensus 205 -~~~~~v~~~~~~gl~v~~~tv~~~ 228 (257)
T COG0584 205 -LLTELVDDAHAAGLKVHVWTVNEE 228 (257)
T ss_pred -cccHHHHHHHhCCCeEEEEecCcH
Confidence 024799999999999999999986
|
|
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=295.08 Aligned_cols=239 Identities=24% Similarity=0.287 Sum_probs=150.1
Q ss_pred eCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCcccccc
Q 005970 97 RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSID 176 (667)
Q Consensus 97 HRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d 176 (667)
|||+++.+||||++||+.|++.|++ +||+|||+||||++||+||.+++|+|++.+ .|.+
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~--~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~~-------------------~i~~ 59 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGAD--GIELDVQLTKDGVPVVFHDDTLDRTTGGDG-------------------PISD 59 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSS--EEEEEEEE-TTS-EEE-SSSBSTTTSSTES-------------------BGGG
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCC--eEcccccccCCceeEeccCCeeeeecCCCc-------------------eecc
Confidence 9999999999999999999999999 999999999999999999999999999542 7999
Q ss_pred CCHHhhcccc-ccccc--cCCCCCCCCCCCccCCHHHHHHhhCCCceEE--eccCch-hhhhcCCcHHHHHHHHHhhcC-
Q 005970 177 YTLNDLSNII-LNQGV--YSRTDKFDGNGFQILTVQDMARQIKPPGLWL--NIQHDA-FYAQHNLSMRSFVLSVSRSVV- 249 (667)
Q Consensus 177 ~t~~el~~l~-~~~~~--~~~~~~~~~~~~~iptL~e~l~~~~~~~~~i--eiK~~~-~~~~~~~~~~~~l~~~l~~~~- 249 (667)
+||+||++++ ++.+. ..+...+++ ..+||||+|+|+++...++.+ ++|... ........+...+...+....
T Consensus 60 ~t~~el~~l~~~~~~~~~~~~~~~~~~-~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (256)
T PF03009_consen 60 LTYAELKKLRTLGSKNSPPFRGQRIPG-KQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPEFLKIVKDIVESVSDILK 138 (256)
T ss_dssp S-HHHHTTSBESSTTTTCGGTTTTSCT-CB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHhhCcccccCCcccccccceec-ccccCcHHHHHHhhhhccceeEEEEeecccccchhhcccccccccccccccc
Confidence 9999999999 43321 223333443 358999999999965555444 444211 111000023333333333332
Q ss_pred --------CceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhH--HhhcHHHHHhhcceecCCCccccc
Q 005970 250 --------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS--LLKNLTFIKTFASGILVPKDYIWP 319 (667)
Q Consensus 250 --------~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~--~~~~l~~i~~~a~~i~~~~~~~~~ 319 (667)
.++++||++..|..+++..+ ..++.+.... .. ..+.+ .......+. ...+........
T Consensus 139 ~~~~~~~~~i~~~sf~~~~l~~l~~~~~--~~~~~~l~~~-~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~- 206 (256)
T PF03009_consen 139 NSKQALSRRIIISSFDPEALKQLKQRAP--RYPVGFLFEQ-DD------EAPADISLFELYKFVK--CPGFLASVWNYA- 206 (256)
T ss_dssp HHHHHHCTSEEEEESCHHHHHHHHHHCT--TSEEEEEESS-CH------HHHHH-CCHHHHHHHT--TTEEEEEHGGGG-
T ss_pred ccccccccccccccCcHHHHHHHHhcCC--CceEEEEecc-Cc------cccccchhhHHHHhhc--cccccccccccc-
Confidence 34899999999999999862 4677653321 11 01111 000111111 111111100000
Q ss_pred cCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCC
Q 005970 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (667)
Q Consensus 320 ~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~ 387 (667)
. ...++++++.+|++|+.|++||||++ ...+++.++++| |||||||+|++
T Consensus 207 ----~-~~~~~~~v~~~~~~g~~v~~wtvn~~----------~~~~~~~l~~~g---vdgIiTD~P~~ 256 (256)
T PF03009_consen 207 ----D-RLGNPRLVQEAHKAGLKVYVWTVNDP----------DVEDMKRLLDLG---VDGIITDFPDT 256 (256)
T ss_dssp ----H-HCEBHHHHHHHHHTT-EEEEBSB-SH----------SHHHHHHHHHHT----SEEEES-HHH
T ss_pred ----c-ccccHHHHHHHHHCCCEEEEEecCCc----------HHHHHHHHHhCC---CCEEEEcCCCC
Confidence 0 00135699999999999999999753 137899999888 99999999963
|
; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B .... |
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=293.21 Aligned_cols=216 Identities=15% Similarity=0.128 Sum_probs=159.0
Q ss_pred ccCCceeEEEecCCCCC----------------------CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 403 SKSANLLVISKNGASGD----------------------YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 403 ~~~~~~~iiaHRG~~~~----------------------~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
.....|+||||||++.. +||||++||++|++.|+|+||||||+||||++||+||.+|+
T Consensus 19 ~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~ 98 (309)
T cd08613 19 PPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLD 98 (309)
T ss_pred CCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCccc
Confidence 44567899999998765 49999999999999999999999999999999999999999
Q ss_pred ccccCCCCccCCccccccccccCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCC--CccccCHHHHHHHHHhcC
Q 005970 461 NSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN--AGKFMKLSDFLEMAKNAN 538 (667)
Q Consensus 461 r~t~v~~~~~~~~~~~~~~~~~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~--~~~iPtL~EvL~~~~~~~ 538 (667)
|+|| ++|. |.++|++||++|+++.+++... .....|.+ ..+||||+|+|+.++..
T Consensus 99 R~T~------------------g~g~-V~dlTlaEL~~Ld~g~~~~~~~---g~~~p~~~~~~~~IPTL~EvL~~~~~~- 155 (309)
T cd08613 99 CRTD------------------GSGV-TRDHTMAELKTLDIGYGYTADG---GKTFPFRGKGVGMMPTLDEVFAAFPDR- 155 (309)
T ss_pred cccC------------------CCCc-hhhCCHHHHhhCCcCccccccc---ccccccccCCCCCCcCHHHHHHhcCCC-
Confidence 9999 7776 9999999999999986542100 00111222 24799999999999763
Q ss_pred CcceEEEEeecchhhhhhhcccHHHHHHHHHHhcCCCCCCCceEEEEeCC--HHHHHHHHhc-cCCcEEEEeccchhhhh
Q 005970 539 SLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD--SSVLMKLREK-TSYELVYKVKENIRDAL 615 (667)
Q Consensus 539 ~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd--~~~L~~~~~~-p~~~~~~L~~~~~~~~~ 615 (667)
.++||||.+.. ...+.++++|+++++. ++.+.||+ ++.|++++++ |++++.---...
T Consensus 156 ---~l~IEiK~~~~-------~~~~~v~~~i~~~~~~-----r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~~~----- 215 (309)
T cd08613 156 ---RFLINFKSDDA-------AEGELLAEKLATLPRK-----RLQVLTVYGGDKPIAALRELTPDLRTLSKASMK----- 215 (309)
T ss_pred ---cEEEEeCCCCc-------cHHHHHHHHHHhcCcc-----ceEEEEEECCHHHHHHHHHHCCCCceecccchH-----
Confidence 69999997642 3467899999998774 67778887 8889999999 999775221110
Q ss_pred HHHHHHHHHhhh----hcCCC-----eeEEeCCC---CCc-cHHHHHHHHHcCCcEEEE----------eccC
Q 005970 616 NQTIEDIKKFAD----SVVLT-----MSLYLKRG---TSS-QTQLWRSTHITRELVLME----------LLQN 665 (667)
Q Consensus 616 ~~~l~~~~~~a~----~i~~~-----~~i~~~~~---~~~-~~~~v~~ah~~Gl~V~vW----------TVn~ 665 (667)
.....|+. +.-+. ....|.+. +-. +..+++++|++|.+|++| |||+
T Consensus 216 ----~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~ 284 (309)
T cd08613 216 ----DCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDT 284 (309)
T ss_pred ----HHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCC
Confidence 00111111 00010 11122221 112 568999999999999999 8887
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet. |
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=286.26 Aligned_cols=220 Identities=21% Similarity=0.312 Sum_probs=145.3
Q ss_pred ecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccccCC
Q 005970 413 KNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492 (667)
Q Consensus 413 HRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~d~t 492 (667)
|||+++.+||||++||++|++.|+|+||+|||+||||+|||+||.+|.|+++ +.+. |.++|
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~------------------~~~~-i~~~t 61 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTG------------------GDGP-ISDLT 61 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSS------------------TESB-GGGS-
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecC------------------CCce-eccCC
Confidence 9999999999999999999999999999999999999999999999999999 4554 99999
Q ss_pred HHHHcccC-CCcc--CCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 493 WDEIQTLI-PQIS--NPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 493 ~~EL~~L~-~~~~--~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
|+||++++ .+.. .|+ ++..+.+..+||||+|+|+.+.... ..+.+++|............+.+.++..+
T Consensus 62 ~~el~~l~~~~~~~~~~~------~~~~~~~~~~i~tl~e~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 133 (256)
T PF03009_consen 62 YAELKKLRTLGSKNSPPF------RGQRIPGKQKIPTLEEVLELCAKVK--LNLEIKIKSKDEIKDPEFLKIVKDIVESV 133 (256)
T ss_dssp HHHHTTSBESSTTTTCGG------TTTTSCTCB--EBHHHHHHHHHTTT--SEEEEEEEECTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcccccCCcccc------cccceecccccCcHHHHHHhhhhcc--ceeEEEEeecccccchhhccccccccccc
Confidence 99999999 4332 121 2333333468999999999955542 25666666433211000002444555555
Q ss_pred HhcC------CCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCC
Q 005970 570 GNAG------YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTS 642 (667)
Q Consensus 570 ~~~~------~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~ 642 (667)
.... .. .+++++||+++.|..+++. |.+++++++.................++ .............
T Consensus 134 ~~~~~~~~~~~~----~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 206 (256)
T PF03009_consen 134 SDILKNSKQALS----RRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPADISLFELYKFV---KCPGFLASVWNYA 206 (256)
T ss_dssp HHCHHHHHHHHC----TSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH-CCHHHHHHH---TTTEEEEEHGGGG
T ss_pred cccccccccccc----cccccccCcHHHHHHHHhcCCCceEEEEeccCccccccchhhHHHHhh---ccccccccccccc
Confidence 5543 23 6899999999999999999 9999999987421110000001112222 2221111111111
Q ss_pred ---ccHHHHHHHHHcCCcEEEEeccCC
Q 005970 643 ---SQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 643 ---~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.++++|+.+|++|+.|++||||++
T Consensus 207 ~~~~~~~~v~~~~~~g~~v~~wtvn~~ 233 (256)
T PF03009_consen 207 DRLGNPRLVQEAHKAGLKVYVWTVNDP 233 (256)
T ss_dssp HHCEBHHHHHHHHHTT-EEEEBSB-SH
T ss_pred cccccHHHHHHHHHCCCEEEEEecCCc
Confidence 135799999999999999999985
|
; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B .... |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=255.91 Aligned_cols=185 Identities=22% Similarity=0.196 Sum_probs=144.0
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~--~iE~Dv~~tkDg~~vv~Hd------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGAD--GVELDVQLTKDGVLVVIHD------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcC-------------------------------
Confidence 5899999999999999999999999999 9999999999999999999
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC-CCceEEeccCchhhhhcCCcHHHHHHHHHhhcCC--
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV-- 250 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~-~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~-- 250 (667)
+|||+|+|++++ +..+++|+|.+.. ...+++.+++++++++.
T Consensus 48 -------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~----~~~~~~~l~~~i~~~~~~~ 92 (189)
T cd08556 48 -------------------------------IPTLEEVLELVKGGVGLNIELKEPTR----YPGLEAKVAELLREYGLEE 92 (189)
T ss_pred -------------------------------CCCHHHHHHhcccCcEEEEEECCCCC----chhHHHHHHHHHHHcCCcC
Confidence 469999999997 4789999997532 23567889999999864
Q ss_pred -ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCCCCCC
Q 005970 251 -NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPH 329 (667)
Q Consensus 251 -~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~ 329 (667)
++++||++..+.++++.. | +.++.+.. .... . .+... .......+.++.+.+.. ..
T Consensus 93 ~v~i~s~~~~~l~~~~~~~-p-~~~~~~~~-~~~~-~-----~~~~~---~~~~~~~~~~v~~~~~~-----------~~ 149 (189)
T cd08556 93 RVVVSSFDHEALRALKELD-P-EVPTGLLV-DKPP-L-----DPLLA---ELARALGADAVNPHYKL-----------LT 149 (189)
T ss_pred CEEEEeCCHHHHHHHHHhC-C-CCcEEEEe-ecCc-c-----cchhh---hHHHhcCCeEEccChhh-----------CC
Confidence 499999999999999986 3 56766533 2111 0 00000 00111124444443322 24
Q ss_pred hHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCC
Q 005970 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (667)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~ 384 (667)
+.+++.+|++|++|++||+|+ .++++.++++| ||||+||+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~------------~~~~~~~~~~G---VdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVND------------PEDARRLLALG---VDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCC------------HHHHHHHHHCC---CCEEecCC
Confidence 679999999999999999975 37899999887 99999996
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=250.62 Aligned_cols=170 Identities=25% Similarity=0.317 Sum_probs=136.7
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 58999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
+|||+|+|+.+++. +.+++|+|.+.. ...+++.+++++
T Consensus 48 ----------------------------------i~tL~e~l~~~~~~---~~i~leiK~~~~-----~~~~~~~l~~~i 85 (189)
T cd08556 48 ----------------------------------IPTLEEVLELVKGG---VGLNIELKEPTR-----YPGLEAKVAELL 85 (189)
T ss_pred ----------------------------------CCCHHHHHHhcccC---cEEEEEECCCCC-----chhHHHHHHHHH
Confidence 28999999999873 479999998653 136789999999
Q ss_pred HhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHHHH
Q 005970 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQLW 648 (667)
Q Consensus 570 ~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~~v 648 (667)
+++++. ++++|+||+++.+.++++. |++++++++........ .. ..+...++. .+.+ ......++++
T Consensus 86 ~~~~~~----~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~---~~---~~~~~~~~~-~v~~-~~~~~~~~~i 153 (189)
T cd08556 86 REYGLE----ERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPL---LA---ELARALGAD-AVNP-HYKLLTPELV 153 (189)
T ss_pred HHcCCc----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccch---hh---hHHHhcCCe-EEcc-ChhhCCHHHH
Confidence 999876 7999999999999999999 99999999875221110 00 011122322 1111 1112346999
Q ss_pred HHHHHcCCcEEEEeccCC
Q 005970 649 RSTHITRELVLMELLQNS 666 (667)
Q Consensus 649 ~~ah~~Gl~V~vWTVn~e 666 (667)
+.+|++|++|++||||+.
T Consensus 154 ~~~~~~g~~v~~wtvn~~ 171 (189)
T cd08556 154 RAAHAAGLKVYVWTVNDP 171 (189)
T ss_pred HHHHHcCCEEEEEcCCCH
Confidence 999999999999999973
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=247.11 Aligned_cols=165 Identities=25% Similarity=0.256 Sum_probs=130.0
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
||||||+++.+||||++||+.|++.|++ +||+|||+|+||++|++||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~--~iE~DV~lt~Dg~lvv~HD~~~~r~~~----------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGAR--GLELDVRLTKDGELVVYHGPTLDRTTA----------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEcCCCeEEEECCCccccccC-----------------------
Confidence 5899999999999999999999999999 999999999999999999999999862
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC--------CceEEeccCchhhhhcCCcHHHHHHHHH
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~--------~~~~ieiK~~~~~~~~~~~~~~~l~~~l 245 (667)
++++|||+|+|+++++ ..++||+|.+.. ....+.+.+++.+
T Consensus 56 ----------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~---~~~~~~~~~~~~~ 104 (179)
T cd08555 56 ----------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP---EYDEFLAKVLKEL 104 (179)
T ss_pred ----------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC---cchHHHHHHHHHH
Confidence 2489999999999864 568999996532 1235677888888
Q ss_pred hhcC---C---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccc
Q 005970 246 RSVV---V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWP 319 (667)
Q Consensus 246 ~~~~---~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~ 319 (667)
++++ . ++++|| ....+ . .+ . .. . .
T Consensus 105 ~~~~~~~~~~~v~i~sf---------~~~~~---~-~~------------------------~---~~----~-~----- 134 (179)
T cd08555 105 RVYFDYDLRGKVVLSSF---------NALGV---D-YY------------------------N---FS----S-K----- 134 (179)
T ss_pred HHcCCcccCCCEEEEee---------cccCC---C-hh------------------------c---cc----c-h-----
Confidence 8876 3 388898 10000 0 00 0 00 0 0
Q ss_pred cCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCC
Q 005970 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (667)
Q Consensus 320 ~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~ 384 (667)
....+++|+.+|++|++|++||+|+ ..++|++++++| ||||+||+
T Consensus 135 ------~~~~~~~v~~~~~~g~~v~~wtvn~-----------~~~~~~~l~~~G---vd~i~TD~ 179 (179)
T cd08555 135 ------LIKDTELIASANKLGLLSRIWTVND-----------NNEIINKFLNLG---VDGLITDF 179 (179)
T ss_pred ------hhcCHHHHHHHHHCCCEEEEEeeCC-----------hHHHHHHHHHcC---CCEEeCCC
Confidence 1124679999999999999999974 148899999887 99999996
|
The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph |
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=236.11 Aligned_cols=151 Identities=19% Similarity=0.110 Sum_probs=119.9
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
|+||||+++.+||||++||+.|++.||++||+|||+|+||++||+||.+++|++.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 5899999999999999999999999999999999999999999999999988652
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcC----CcceEEEEeecchhhhhhhcccHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQGMSVTNSV 565 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (667)
++++|||+|+|+.+++.. ..+.++||+|.+.. ....+++++
T Consensus 56 -------------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~----~~~~~~~~~ 100 (179)
T cd08555 56 -------------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP----EYDEFLAKV 100 (179)
T ss_pred -------------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC----cchHHHHHH
Confidence 257999999999998730 12479999997543 123678899
Q ss_pred HHHHHhcC---CCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCC
Q 005970 566 MEALGNAG---YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGT 641 (667)
Q Consensus 566 ~~~l~~~~---~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~ 641 (667)
++.+++++ +. ++++++||. .. +.. ..+.. ..
T Consensus 101 ~~~~~~~~~~~~~----~~v~i~sf~--------~~~~~~-------------------------------~~~~~--~~ 135 (179)
T cd08555 101 LKELRVYFDYDLR----GKVVLSSFN--------ALGVDY-------------------------------YNFSS--KL 135 (179)
T ss_pred HHHHHHcCCcccC----CCEEEEeec--------ccCCCh-------------------------------hcccc--hh
Confidence 99999998 54 699999990 00 110 00000 01
Q ss_pred CccHHHHHHHHHcCCcEEEEeccC
Q 005970 642 SSQTQLWRSTHITRELVLMELLQN 665 (667)
Q Consensus 642 ~~~~~~v~~ah~~Gl~V~vWTVn~ 665 (667)
..++++|+++|++|++|++||||+
T Consensus 136 ~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 136 IKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred hcCHHHHHHHHHCCCEEEEEeeCC
Confidence 124689999999999999999997
|
The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph |
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=234.12 Aligned_cols=217 Identities=12% Similarity=0.089 Sum_probs=164.9
Q ss_pred hHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccccCCHHHHcccCCCc
Q 005970 424 TNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQI 503 (667)
Q Consensus 424 Tl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~d~t~~EL~~L~~~~ 503 (667)
+..+|..|.++|||+||+|||+||||+|||+||.++.|+ + +.+. |.++||+||++++.+.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~------------------~~~~-V~dlTleqL~~l~~~~ 76 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-G------------------IKLL-VSDLTAEQLESILDYS 76 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-C------------------CcEE-eecCcHHHHhccCCcc
Confidence 467999999999999999999999999999999999775 5 4454 9999999999999875
Q ss_pred cCCc-cccc-ccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhh----------hcccHHHHHHHHHHh
Q 005970 504 SNPY-FKFK-LFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK----------QGMSVTNSVMEALGN 571 (667)
Q Consensus 504 ~~p~-~~~~-~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~----------~~~~~~~~v~~~l~~ 571 (667)
+... .... ...-..+. +.++|||+|+|+.++.. ++++||||.|...... .-..+++.|++.+-+
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~pTL~evL~~lp~~---iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 77 LDDLNSEISDMVDLKRLL-SSRVVSLETLLELLPPS---IQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccchhhhhc-CCcCCCHHHHHHhhccC---CeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 4211 0000 00001233 37899999999999765 6899999987653210 013578889888887
Q ss_pred cCCC-C---CCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccc--------------------------hhhhhHHHHH
Q 005970 572 AGYN-K---QTALKVMIQSTDSSVLMKLREK-TSYELVYKVKEN--------------------------IRDALNQTIE 620 (667)
Q Consensus 572 ~~~~-~---~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~--------------------------~~~~~~~~l~ 620 (667)
+.-. + ...++|+|+||||++|..++.+ |.+|+.|+++.. +.|.+...++
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~ 232 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIK 232 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhHH
Confidence 6310 0 0126899999999999999999 999999998752 2334456778
Q ss_pred HHHHhhhhcCCCeeEEeCCCCCccHHHHHHHHHcCCcEEEEecc
Q 005970 621 DIKKFADSVVLTMSLYLKRGTSSQTQLWRSTHITRELVLMELLQ 664 (667)
Q Consensus 621 ~~~~~a~~i~~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn 664 (667)
++.++|...++.+.+.+...+...+.+|+.++++|+-+++|+-.
T Consensus 233 ~Av~fA~~~nL~Giv~~~~~L~~~P~lV~~ik~~GL~lv~~g~~ 276 (300)
T cd08578 233 EAVRFAKNNNLLGLILPYSLLNIVPQLVESIKSRGLLLIASGEP 276 (300)
T ss_pred HHHHHHHHcCCcEEEecHHHHhhChHHHHHHHHcCCEEEEECCC
Confidence 88889988777666665444666789999999999999999863
|
This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos |
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=246.75 Aligned_cols=284 Identities=35% Similarity=0.472 Sum_probs=211.3
Q ss_pred HHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhhhhhcCcCcccCCceeEEEe
Q 005970 334 LDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISK 413 (667)
Q Consensus 334 ~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~~~~~~~~~~~~~~~iiaH 413 (667)
..+|..|+.+++|.+.+...+.++|..+...++...+..+...++++..|+|-.....+.++.+.+ ...+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 74 (341)
T KOG2258|consen 2 DDAHIAGLEVFASGFANDFSLAFNYSYALILVTLAFLLNVLFSLLFLFSDPPPTASAHKNLFLHIG-------GWLIIAH 74 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhhhhHhhhcCCccchhhhHHHhcCCC-------CceeEec
Confidence 356778888888888777667777777776777777777788899999999999888888875422 6899999
Q ss_pred cCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccccCCH
Q 005970 414 NGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIW 493 (667)
Q Consensus 414 RG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~d~t~ 493 (667)
||+++.+||||++||++|++.|||.|||||++|+||++|++||.+..|++++ +.. +.++||
T Consensus 75 rga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v------------------~~~-~~~lt~ 135 (341)
T KOG2258|consen 75 RGASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGV------------------PEI-VFDLTW 135 (341)
T ss_pred cCCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeecc------------------eee-eccCCH
Confidence 9999999999999999999999999999999999999999999999999994 333 899999
Q ss_pred HHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHHHhcC
Q 005970 494 DEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG 573 (667)
Q Consensus 494 ~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~ 573 (667)
.|++++......++ ..+.+. .+++|+|+|....+-+.+ +.+..|.| + .+.+.+++.+.+.+
T Consensus 136 ~e~~~l~~~~~~~~------~~~~~~-~~~~~~l~e~v~~~~~~n--~~~l~d~~---~-------~~~~~vl~~l~~~~ 196 (341)
T KOG2258|consen 136 MELRKLGPKIENPF------AGPIIT-LEKLLTLAEAVASVVGNN--VAMLNDVK---L-------LVVDKVLEALKNAT 196 (341)
T ss_pred HHHhccCccccCcc------cccccc-hhhhccHHHHHHHHHcCC--hhhhhhhh---h-------hhHHHHHHHHHHHh
Confidence 99999998765432 112222 378999999999998762 23455555 1 45677777777776
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCC-eeEEeCCC---CCccHHHH
Q 005970 574 YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLT-MSLYLKRG---TSSQTQLW 648 (667)
Q Consensus 574 ~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~-~~i~~~~~---~~~~~~~v 648 (667)
...+..+++++|||++.+|.++++. |.+.++..+... ......++++++..+.++ ..+.+... ....+.++
T Consensus 197 ~~~~~~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~~~----~ls~~~dik~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 272 (341)
T KOG2258|consen 197 SDFSLYDKVLVQSFNPIVLYRLKKLDPFILIGDTWRFT----FLSGIEDIKKRAFAVVSSKLAIFPVSDSLVLAITKNVV 272 (341)
T ss_pred cCCCccceEEEEecCcHHHHHhccCCceEEecceecch----hhccchhhhcccceeeechHHHHHHHHHHhhhhhccee
Confidence 6544447899999999999999999 885444443321 111223444554444433 22222111 11223678
Q ss_pred HHHHHcCCcEEEEeccCC
Q 005970 649 RSTHITRELVLMELLQNS 666 (667)
Q Consensus 649 ~~ah~~Gl~V~vWTVn~e 666 (667)
...++.++.|++|..|+|
T Consensus 273 ~~~~~~~~~v~~~~~~~e 290 (341)
T KOG2258|consen 273 APLQKLNLVVYVEVFNNE 290 (341)
T ss_pred eehhcCCcEEEEEEeecc
Confidence 888889999999988876
|
|
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=222.52 Aligned_cols=274 Identities=20% Similarity=0.257 Sum_probs=194.9
Q ss_pred hhcccCCCcCccccccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccc
Q 005970 72 QVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151 (667)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~ 151 (667)
..+.+.+....++.+.. ...|++|||+++.+||||++||++|++.|+| .||+||++|+||++|++||.+.+|++++
T Consensus 51 ~~~~~~~~~~~~~~~~~--~~~i~~~rga~g~~penT~~A~~~a~~~Gad--~ie~dV~~TsDg~~v~l~d~~~~r~~~v 126 (341)
T KOG2258|consen 51 DPPPTASAHKNLFLHIG--GWLIIAHRGASGDAPENTLAAYKKAIADGAD--LIELDVQMTSDGVPVILHDSTTVRVTGV 126 (341)
T ss_pred CCccchhhhHHHhcCCC--CceeEeccCCCCCCCcccHHHHHHHHHcCCc--EEEeccccCCCCceEEeecCcceeeecc
Confidence 33444344444444433 6889999999999999999999999999999 9999999999999999999999999986
Q ss_pred cccccccccccccCCCCCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCCC--ceEEeccCchh
Q 005970 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPP--GLWLNIQHDAF 229 (667)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~~--~~~ieiK~~~~ 229 (667)
.. .+.++||.|++++..........+.+. ..++|+|+|....+-+. .+.-|.|
T Consensus 127 ~~-------------------~~~~lt~~e~~~l~~~~~~~~~~~~~~--~~~~~~l~e~v~~~~~~n~~~l~d~~---- 181 (341)
T KOG2258|consen 127 PE-------------------IVFDLTWMELRKLGPKIENPFAGPIIT--LEKLLTLAEAVASVVGNNVAMLNDVK---- 181 (341)
T ss_pred ee-------------------eeccCCHHHHhccCccccCcccccccc--hhhhccHHHHHHHHHcCChhhhhhhh----
Confidence 43 489999999999987654322111122 25899999999887543 2223333
Q ss_pred hhhcCCcHHHHHHHHHhhcCC-------ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHH
Q 005970 230 YAQHNLSMRSFVLSVSRSVVV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF 302 (667)
Q Consensus 230 ~~~~~~~~~~~l~~~l~~~~~-------~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~ 302 (667)
..+.+.+++.+++.+. +++|||++.+|.++++.. + . + +. .+.+.. ......+.
T Consensus 182 -----~~~~~~vl~~l~~~~~~~~~~~kv~v~s~~~~~l~~~~~~~-~-~----~-~i-~~~~~~-------~~ls~~~d 241 (341)
T KOG2258|consen 182 -----LLVVDKVLEALKNATSDFSLYDKVLVQSFNPIVLYRLKKLD-P-F----I-LI-GDTWRF-------TFLSGIED 241 (341)
T ss_pred -----hhhHHHHHHHHHHHhcCCCccceEEEEecCcHHHHHhccCC-c-e----E-Ee-cceecc-------hhhccchh
Confidence 2456667777776543 499999999999999874 1 1 1 11 111111 01112445
Q ss_pred HHhhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEec
Q 005970 303 IKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (667)
Q Consensus 303 i~~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiT 382 (667)
+++++.++.+++..+.+......+...+.++...++.++.|+++..+++....+++..++.-++..++. ..|++|.+|
T Consensus 242 ik~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~ 319 (341)
T KOG2258|consen 242 IKKRAFAVVSSKLAIFPVSDSLVLAITKNVVAPLQKLNLVVYVEVFNNEVVLAVDFSAAPTIELAGWIT--NVGIDGYIT 319 (341)
T ss_pred hhcccceeeechHHHHHHHHHHhhhhhcceeeehhcCCcEEEEEEeeccceeeccccccCceEeeeeec--cccccCcee
Confidence 666777777776666554322222223368999999999999999999866777777777777777776 557999999
Q ss_pred CCCCCchhhhhhhh
Q 005970 383 DFPLTPSAAVDCFA 396 (667)
Q Consensus 383 D~P~~~~~~l~~~~ 396 (667)
++|-.+..+.+..+
T Consensus 320 ~~~~~~~~l~~~~~ 333 (341)
T KOG2258|consen 320 DFHLTAPRLTDNPC 333 (341)
T ss_pred eccchhhHhhcccc
Confidence 99988877776543
|
|
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=208.64 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=155.3
Q ss_pred HHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccccccCCHHhhccccc
Q 005970 108 SSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIIL 187 (667)
Q Consensus 108 Tl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~t~~el~~l~~ 187 (667)
+..+|-.|.++|+| +||+|||+||||+|||+||.++.|+ ++. ++|.|+||+||++++.
T Consensus 17 ~~~sfvtAsslgad--~VE~DVqLTkDgvpVV~HD~~i~~t-~~~-------------------~~V~dlTleqL~~l~~ 74 (300)
T cd08578 17 DGNSFVTASSLSGE--YLRVKVCVLKDGTPVVAPEWFVPVG-GIK-------------------LLVSDLTAEQLESILD 74 (300)
T ss_pred CchhHHHHHHcCCC--EEEEEEEECcCCEEEEECCCceEec-CCc-------------------EEeecCcHHHHhccCC
Confidence 46699999999999 9999999999999999999999775 421 3799999999999998
Q ss_pred cccccCCC--------CCCCCCCCccCCHHHHHHhhC-CCceEEeccCchhhhhcC-----------CcHHHHHHHHHhh
Q 005970 188 NQGVYSRT--------DKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHN-----------LSMRSFVLSVSRS 247 (667)
Q Consensus 188 ~~~~~~~~--------~~~~~~~~~iptL~e~l~~~~-~~~~~ieiK~~~~~~~~~-----------~~~~~~l~~~l~~ 247 (667)
+.++.... ..+. +.++|||+|+|+.+. ..+++||||.|...+... -.+++.+++.+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~--~~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 75 YSLDDLNSEISDMVDLKRLL--SSRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccccchhhhhc--CCcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 76542100 1122 358999999999884 478999999987653211 1245556666554
Q ss_pred cC-----------CceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCC-----------------CCCcchhHHhh-
Q 005970 248 VV-----------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEP-----------------TTNQTYGSLLK- 298 (667)
Q Consensus 248 ~~-----------~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~y~~~~~- 298 (667)
+. .++++|||++++..++.++ | ++|+.| ++....-.. .....|.+.+.
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQ-p-~yPV~f-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~ 229 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQ-P-NFPVFF-AMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSR 229 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcC-C-CCCEEE-EecCCccccccccccccccccccccccccccccCchhh
Confidence 41 2399999999999999886 3 688887 433221100 01113555544
Q ss_pred cHHHHHhhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccc
Q 005970 299 NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVD 378 (667)
Q Consensus 299 ~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVD 378 (667)
.+++..++|...+. .+.+.+. ..+...+.+|+.++++||.+++|+-.... .+ .... +.|||
T Consensus 230 Si~~Av~fA~~~nL-~Giv~~~---~~L~~~P~lV~~ik~~GL~lv~~g~~~~~-----------~~-~~~~---~~~vn 290 (300)
T cd08578 230 SIKEAVRFAKNNNL-LGLILPY---SLLNIVPQLVESIKSRGLLLIASGEPESL-----------IE-VAEA---GDGIN 290 (300)
T ss_pred hHHHHHHHHHHcCC-cEEEecH---HHHhhChHHHHHHHHcCCEEEEECCCCcc-----------cc-cccc---ccCCc
Confidence 56666666543222 1112111 11334578999999999999999864210 00 1122 34599
Q ss_pred eEecCC
Q 005970 379 GVLSDF 384 (667)
Q Consensus 379 GIiTD~ 384 (667)
|++.|.
T Consensus 291 G~~~~~ 296 (300)
T cd08578 291 GVVTED 296 (300)
T ss_pred eEEeCC
Confidence 999875
|
This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos |
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=173.05 Aligned_cols=187 Identities=12% Similarity=0.079 Sum_probs=127.2
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccc
Q 005970 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (667)
Q Consensus 94 iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (667)
|||||| ||++||++|++. | +||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--d--gvE~DVr~t-Dg~lVV~HD~~l~--------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--F--GVETDIRDY-GGQLVISHDPFVK--------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--C--EEEEEEEee-CCeEEEECCCCCC---------------------------
Confidence 589999 999999999999 8 999999999 9999999998752
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhcCCcHHHHHHHHHhhcCCc--
Q 005970 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN-- 251 (667)
Q Consensus 174 v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~~-- 251 (667)
++|||+|+|+++++..+++|||.+ .+++.+.+++++++..
T Consensus 42 ------------------------------~~PtLeEvL~~~~~~~l~inIK~~--------~l~~~l~~li~~~~~~~~ 83 (192)
T cd08584 42 ------------------------------NGELLEDWLKEYNHGTLILNIKAE--------GLELRLKKLLAEYGITNY 83 (192)
T ss_pred ------------------------------CCCCHHHHHHhcccccEEEEECch--------hHHHHHHHHHHhcCCcce
Confidence 468999999999887899999943 3678899999998764
Q ss_pred -eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCCCCCCh
Q 005970 252 -YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHT 330 (667)
Q Consensus 252 -~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~~ 330 (667)
+++||++..+++++.-. .+..... ++. +.. ..+-.+...+.++..+...-.+ -+.
T Consensus 84 vi~ssf~~~~l~~~~~~~----~~i~tr~-Se~--E~~---------~~~~~~~~~~~~VW~D~f~~~~--------~~~ 139 (192)
T cd08584 84 FFLDMSVPDIIKYLENGE----KRTATRV-SEY--EPI---------PTALSLYEKADWVWIDSFTSLW--------LDN 139 (192)
T ss_pred EEEEcCCHHHHHHHhcCC----CeeEEee-ccc--ccc---------hHHHHhhccccEEEEecccccC--------CCH
Confidence 89999999999997742 1222212 111 110 0111122335555554332221 246
Q ss_pred HHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHH--HhCCCcccceEecCCCCCc
Q 005970 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSF--IDNGDFSVDGVLSDFPLTP 388 (667)
Q Consensus 331 ~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~l--i~~G~~gVDGIiTD~P~~~ 388 (667)
..++...++|.+|..= -.|. .+-|-.++++.+ ++..+.--++|+||+|+.+
T Consensus 140 ~~~~~~~~~~~~~c~V--SpEL-----h~~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~~ 192 (192)
T cd08584 140 DLILKLLKAGKKICLV--SPEL-----HGRDHLAEWEAKQYIEFLKENFDALCTKVPDLW 192 (192)
T ss_pred HHHHHHHHCCcEEEEE--CHHH-----cCCChHHHHHHHHhhhhccccCeeEeccCcccC
Confidence 7899999999998653 2331 111223344422 2222112579999999863
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=175.02 Aligned_cols=152 Identities=10% Similarity=0.068 Sum_probs=111.9
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~ 489 (667)
|+|||| ||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 589999 999999999999 9999999999 9999999999763
Q ss_pred cCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHH
Q 005970 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (667)
Q Consensus 490 d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (667)
++|||+|+|+.++.. .++||||.. .+++++++++
T Consensus 42 ---------------------------------~~PtLeEvL~~~~~~----~l~inIK~~---------~l~~~l~~li 75 (192)
T cd08584 42 ---------------------------------NGELLEDWLKEYNHG----TLILNIKAE---------GLELRLKKLL 75 (192)
T ss_pred ---------------------------------CCCCHHHHHHhcccc----cEEEEECch---------hHHHHHHHHH
Confidence 149999999999754 589999943 4678999999
Q ss_pred HhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCC-eeEEeCCCCCccHHH
Q 005970 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLT-MSLYLKRGTSSQTQL 647 (667)
Q Consensus 570 ~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~-~~i~~~~~~~~~~~~ 647 (667)
+++++. ++++|+||++.++.+++.- +.+.+.+.-.+ ..+..+. -|...-++| .... ..-.+.+.
T Consensus 76 ~~~~~~----~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E----~~~~~~~---~~~~~~~VW~D~f~---~~~~~~~~ 141 (192)
T cd08584 76 AEYGIT----NYFFLDMSVPDIIKYLENGEKRTATRVSEYE----PIPTALS---LYEKADWVWIDSFT---SLWLDNDL 141 (192)
T ss_pred HhcCCc----ceEEEEcCCHHHHHHHhcCCCeeEEeecccc----cchHHHH---hhccccEEEEeccc---ccCCCHHH
Confidence 999987 7999999999999999976 54444332111 1112111 111222333 2111 11234578
Q ss_pred HHHHHHcCCcEEE
Q 005970 648 WRSTHITRELVLM 660 (667)
Q Consensus 648 v~~ah~~Gl~V~v 660 (667)
+....++|.+|..
T Consensus 142 ~~~~~~~~~~~c~ 154 (192)
T cd08584 142 ILKLLKAGKKICL 154 (192)
T ss_pred HHHHHHCCcEEEE
Confidence 8888888888764
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-10 Score=115.03 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=46.2
Q ss_pred CChHHHHHHHHcCC-----eEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhhh
Q 005970 328 PHTTIVLDAHKERL-----EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCF 395 (667)
Q Consensus 328 ~~~~~v~~ah~~Gl-----~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~ 395 (667)
...++++.+|++|. +|++||||+ .+++++++++| |||||||+|+.+.++++..
T Consensus 192 ~~~~lv~~~~~rd~~g~i~kV~vWTVn~------------~~~~~~ll~~G---VDGIITD~P~~i~~~l~~~ 249 (265)
T cd08576 192 TCARLREAIKKRDTPGYLGKVYGWTSDK------------GSSVRKLLRLG---VDGIITNYPKRIIDVLKES 249 (265)
T ss_pred ccHHHHHHHHHcCCCCcCCeEEEEeCCC------------HHHHHHHHhcC---CCEEEECCHHHHHHHHHhc
Confidence 35789999999999 999999965 37899999887 9999999999888877654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline |
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=116.02 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=63.6
Q ss_pred HHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCccccccCCHHhhccccccccc
Q 005970 112 YSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191 (667)
Q Consensus 112 ~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~t~~el~~l~~~~~~ 191 (667)
|..|++.|++ +||.||+++ ||+++|.||..+.|... -+.++++++|.++--...
T Consensus 15 l~~Al~~g~~--svEaDV~l~-dg~l~V~Hd~~~l~~~~----------------------tl~~Lyl~pL~~~l~~~n- 68 (228)
T cd08577 15 LYDALSAGFG--SIEADVWLV-NGDLLVAHDEVDLSPAR----------------------TLESLYLDPLLEILDQNN- 68 (228)
T ss_pred hHHHHHcCCC--EEEEeEEEE-CCEEEEEcChhHcCccC----------------------CHHHHhHHHHHHHHHHcC-
Confidence 6789999999 999999999 99999999999877622 478999999987543321
Q ss_pred cCCCCCCCCCCCccCCHHHHHHhh-CCCceEEeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 005970 192 YSRTDKFDGNGFQILTVQDMARQI-KPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (667)
Q Consensus 192 ~~~~~~~~~~~~~iptL~e~l~~~-~~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~ 250 (667)
+ ... ... ....++||+|..... ...++..+++.+++.+.
T Consensus 69 --------~---~~~------~~~~~~l~LlIDiKt~g~~---t~~~l~~~L~~~~~~~~ 108 (228)
T cd08577 69 --------G---QAY------NDPEQPLQLLIDIKTDGES---TYPALEEVLKPYIDIGY 108 (228)
T ss_pred --------C---CCC------CCCCCceEEEEEECCCChH---HHHHHHHHHHHHHhcCc
Confidence 1 111 211 235799999954321 12345555666665544
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-10 Score=113.84 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcccccCCHHHHcccCCCccCCc
Q 005970 428 YQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPY 507 (667)
Q Consensus 428 f~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~i~d~t~~EL~~L~~~~~~p~ 507 (667)
|..|++.||++||+||+++ ||+++|.||..+.+... .+.++++++|.++..+..
T Consensus 15 l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~~~----------------------tl~~Lyl~pL~~~l~~~n--- 68 (228)
T cd08577 15 LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSPAR----------------------TLESLYLDPLLEILDQNN--- 68 (228)
T ss_pred hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCccC----------------------CHHHHhHHHHHHHHHHcC---
Confidence 7789999999999999999 99999999999987622 388999999998664421
Q ss_pred ccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHHHHHhcCCC
Q 005970 508 FKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYN 575 (667)
Q Consensus 508 ~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~ 575 (667)
+. .. ....+...|+||||...... ..++..+++.+++.++.
T Consensus 69 --------~~------~~---------~~~~~~l~LlIDiKt~g~~t----~~~l~~~L~~~~~~~~~ 109 (228)
T cd08577 69 --------GQ------AY---------NDPEQPLQLLIDIKTDGEST----YPALEEVLKPYIDIGYL 109 (228)
T ss_pred --------CC------CC---------CCCCCceEEEEEECCCChHH----HHHHHHHHHHHHhcCce
Confidence 11 11 22112257999999765421 25667777777777765
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=87.24 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=44.8
Q ss_pred eEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 409 ~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
+..+|.-+ .-..+|||+.||++|++.||++||+||+-++||+|||+||.++..
T Consensus 13 I~SSHNTYL~g~Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlts 68 (229)
T cd08592 13 IASSHNTYLTGDQLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLTS 68 (229)
T ss_pred eeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCC
Confidence 33445442 346899999999999999999999999999999999999988753
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl |
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.3e-05 Score=79.04 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=36.4
Q ss_pred EEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeE-EEeccCcc
Q 005970 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP-FCLSFINL 459 (667)
Q Consensus 410 iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~-Vv~HD~~L 459 (667)
+|||| =||+.....|+++||..||+||...++|.+ ..+||--.
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pc 45 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPC 45 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCcc
Confidence 46776 399999999999999999999999999877 67777543
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline |
| >PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-06 Score=58.65 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=22.4
Q ss_pred eEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCC
Q 005970 342 EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (667)
Q Consensus 342 ~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~ 386 (667)
+|+.||+++ .+.++.++++| ||||+||+|+
T Consensus 1 kV~~WT~d~------------~~~~~~~l~~G---VDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDK------------PASWRELLDLG---VDGIMTDYPD 30 (30)
T ss_dssp EEEEET--S------------HHHHHHHHHHT----SEEEES-HH
T ss_pred CeEEecCCC------------HHHHHHHHHcC---CCEeeCCCCC
Confidence 689999965 47899999888 9999999984
|
|
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.9e-06 Score=83.49 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=41.1
Q ss_pred CCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
-..+|||+.||.+|+..||++||+||+-++||+|||+||.++..
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlts 68 (229)
T cd08627 25 QFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLTT 68 (229)
T ss_pred ccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCC
Confidence 45789999999999999999999999999999999999998753
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.8e-06 Score=81.66 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=43.9
Q ss_pred EEEeCC---CCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCc
Q 005970 94 VVARGG---FSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (667)
Q Consensus 94 iiaHRG---~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~ 146 (667)
-.+|.- |.-.++|||++||..|+..|++ .||+||+-++||+|||+||.++.
T Consensus 14 ~SSHNTYL~g~Ql~~ess~eay~~AL~~GcR--~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 14 ASSHNTYLTGDQLSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred eccccccccCCccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 345553 2356899999999999999999 99999999999999999998763
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl |
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.2e-06 Score=92.73 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=51.4
Q ss_pred CceeEEEecCCCC-------CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccccccc
Q 005970 406 ANLLVISKNGASG-------DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTN 464 (667)
Q Consensus 406 ~~~~iiaHRG~~~-------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~ 464 (667)
...+.++|||... ..+|||+..+..|++.|+|++|+|||+|+|.++||+||..+...-.
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~~ 388 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVSVI 388 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEeec
Confidence 3457899999653 3579999999999999999999999999999999999999876543
|
|
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.5e-05 Score=77.75 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=40.4
Q ss_pred CCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 101 ~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
.-..+|||++||..|+..|++ .||+||+-++||+|||+||.++
T Consensus 24 ~Ql~~~ss~e~y~~aL~~GcR--~vElD~wdg~dgePvV~Hg~tl 66 (229)
T cd08627 24 DQFSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPVIYHGHTL 66 (229)
T ss_pred CccCCcccHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcC
Confidence 346799999999999999999 9999999999999999999887
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.3e-06 Score=90.41 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=51.5
Q ss_pred CCCEEEEeCCCCC-------CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCccccc
Q 005970 90 DPPFVVARGGFSG-------IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASN 150 (667)
Q Consensus 90 ~~~~iiaHRG~~~-------~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~ 150 (667)
...+.++|||... ..+|||+..+..+++.|+| ++|+|||+|+|.++|++||..+...-.
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad--~ve~dvqlt~D~~~vvyh~f~~~~~~~ 388 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGAD--LVEMDVQLTKDLVPVVYHDFVLLVSVI 388 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhh--HHHhhcccccCCceeeeccceeEEeec
Confidence 4568899999643 3579999999999999999 999999999999999999998866533
|
|
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=74.60 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
..-+-|+.+|.+|+..||++||+||+-++||+|||+||.++..
T Consensus 26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tlts 68 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTLTS 68 (260)
T ss_pred ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcccc
Confidence 3456789999999999999999999999999999999988643
|
This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment |
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00065 Score=63.17 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=39.6
Q ss_pred CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcc
Q 005970 417 SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (667)
Q Consensus 417 ~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L 459 (667)
...+.+|+..+|..+++.|++++|+||+.++||.++|+|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 3567899999999999999999999999999999999999864
|
Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs. |
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00087 Score=68.59 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=38.0
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..-+-|+++|..|+..|++ .||+||+-++||.|||+||.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCR--CVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred ecCccCHHHHHHHHHhCCC--EEEEEeEcCCCCCEEEEeCCcc
Confidence 4567799999999999999 9999999999999999999875
|
This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment |
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0027 Score=59.01 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 101 ~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
...+.+|+..+|..+++.|+. ++|+||+.++||.++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR--~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCR--CVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCC--EEEEEcccCCCCCEEEEECCcc
Confidence 356789999999999999999 9999999999999999999764
|
Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs. |
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.012 Score=58.91 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=37.5
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
..-+.|..+|.+|+..||..||+|++=-.||+|||+|..++.
T Consensus 26 l~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tlt 67 (227)
T cd08594 26 LLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTLT 67 (227)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCcc
Confidence 455788899999999999999999999899999999987653
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif, |
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.017 Score=58.72 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=38.4
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
..-+-+..+|.+|+..||..||+|++=-.||+|||+|..++..
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tlts 68 (254)
T cd08633 26 LMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTLTS 68 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCccc
Confidence 4567789999999999999999999988899999999988743
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.025 Score=56.96 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=41.1
Q ss_pred ceeEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcc
Q 005970 407 NLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (667)
Q Consensus 407 ~~~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L 459 (667)
-.+.-.|.-+ .-..-+-|..+|..|++.||..||+||+=..||+|+|+|..++
T Consensus 11 YfI~sSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 11 YFIFSSHNSYLTGNQLSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred hEEeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 3445556432 1234466788999999999999999999888999999998764
|
This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi |
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.021 Score=57.33 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=37.3
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L 459 (667)
..-+-|..+|..|+..||..||+|++=-.||+|||+|..++
T Consensus 26 l~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 45678899999999999999999999999999999997764
|
This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki |
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.016 Score=59.20 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=38.0
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
..-+-+..+|.+|+..||..||+||+=-.||+|||+|..++.
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tlt 67 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTLT 67 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCcc
Confidence 445788999999999999999999999889999999998774
|
This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y) |
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.018 Score=58.89 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
.-+-|..+|.+|+..||..||+|++=-.||+|||+|..++..
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlts 68 (258)
T cd08631 27 RGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTFTS 68 (258)
T ss_pred cCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcccC
Confidence 446699999999999999999999988899999999988743
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which |
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.021 Score=57.95 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=37.3
Q ss_pred CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
.-+-+..+|.+|+..||..||+|++=-.||+|||+|..++..
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tlts 68 (253)
T cd08632 27 LSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTLTS 68 (253)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCCcc
Confidence 446688999999999999999999998999999999987643
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.023 Score=57.93 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=38.2
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
..-+-|..+|.+|+..||..||+|++=-.||+|||+|..++..
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tlts 68 (254)
T cd08596 26 LKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTLTT 68 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCccc
Confidence 3456789999999999999999999998899999999988743
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core |
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.019 Score=58.80 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=37.8
Q ss_pred CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
.-+-|..+|.+|+..||..||+|++=-.||+|||+|..++..
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlts 68 (258)
T cd08630 27 GGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLTS 68 (258)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcccc
Confidence 446789999999999999999999998999999999987654
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh |
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.021 Score=58.34 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
.-+-|..+|..|+..||..||+|++=-.||+|||+|..++.
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~t 67 (254)
T cd08628 27 RSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTRT 67 (254)
T ss_pred ecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCcc
Confidence 34667899999999999999999998889999999998764
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.029 Score=57.31 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
..-+-|..+|.+|+..||..||+|++=-.||+|||+|..++..
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlts 68 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTS 68 (258)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCCcc
Confidence 3456689999999999999999999988899999999987643
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain |
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.032 Score=56.23 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=37.1
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
..-+-|..+|.+|+..||..||+||+=-.||+|||+|..++.
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~t 67 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTLT 67 (231)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCCc
Confidence 345678999999999999999999998888999999987664
|
This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro |
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.032 Score=57.21 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=38.1
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
..-+-|..+|.+|+..||..||+|++=-.||+|||+|..++..
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~t~ 68 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTLTS 68 (257)
T ss_pred ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcccc
Confidence 3556789999999999999999999988899999999987653
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is |
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.033 Score=56.88 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=36.9
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeec--CCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dg~~Vv~HD~~L~r 461 (667)
..-+-+..+|.+|+..||..||+||+=-. ||+|||+|..++..
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tlts 70 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAMCT 70 (257)
T ss_pred ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCCcc
Confidence 34567899999999999999999999654 78999999988743
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.05 Score=54.58 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=38.2
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
-..-+.|.++|..|+..|+. .||+|++=-.||.|||+|..++
T Consensus 25 Ql~~~ss~e~Y~~aL~~GcR--cvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 25 QLLSQSRVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 35678889999999999999 9999999999999999998764
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif, |
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.045 Score=55.96 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHHCCCCeEEcceeeec--CCeEEEeccCcccc
Q 005970 420 YPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINLIN 461 (667)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dg~~Vv~HD~~L~r 461 (667)
.-+-|..+|.+|+..||..||+|++=-. ||.|||+|..++..
T Consensus 27 ~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tlts 70 (258)
T cd08623 27 AGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTMTT 70 (258)
T ss_pred CCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCccc
Confidence 3466899999999999999999999665 68999999987753
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.045 Score=56.09 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=36.7
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeee--cCCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMS--KDGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lT--kDg~~Vv~HD~~L~r 461 (667)
..-+-|..+|.+|+..||..||+|++=- .||+|||+|..++..
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tlts 70 (261)
T cd08624 26 FSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMTT 70 (261)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCccc
Confidence 3456789999999999999999999954 378999999988743
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.061 Score=54.99 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=37.1
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecC--CeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKD--GVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkD--g~~Vv~HD~~L~r 461 (667)
..-+-|..+|..|+..||..||+|++=-.| |+|||+|..++..
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tlts 70 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTMCT 70 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCCcc
Confidence 345778899999999999999999997664 9999999988753
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod |
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.083 Score=53.83 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=38.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
-...+-|.++|..|+..|+. .||+||+=-.||.|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCR--CVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 35667889999999999999 9999999999999999999876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.072 Score=54.72 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeee--cCCeEEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMS--KDGVPFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lT--kDg~~Vv~HD~~L~r 461 (667)
..-+-|..||..|+..||..||+|++=- .|+.|||+|..++..
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~ 70 (258)
T cd08625 26 LTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTMTT 70 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcccc
Confidence 3557789999999999999999999954 357999999988754
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.098 Score=52.59 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=38.2
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
-.+.+-|.++|..|+..|+. .||+|++=-.||.|||+|..++
T Consensus 25 Ql~~~Ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 25 QLTGESSVEAYIRALLRGCR--CVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCeEEeeCCCC
Confidence 35678899999999999999 9999999999999999998764
|
This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki |
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.11 Score=52.36 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=40.8
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 93 ~iiaHRG~---~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
+..+|.-+ .-..-+-|.++|..|+..|+. .||+||+=..||.|+|+|..++
T Consensus 13 I~sSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 13 IFSSHNSYLTGNQLSSRSSTAPIIEALLRGCR--VIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred EeccccccccCCccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCeEEEeCCCC
Confidence 34555432 223456788999999999999 9999999999999999998763
|
This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi |
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.097 Score=53.56 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
-..-+-|.++|..|+..|+. .||+||+=-.||.|||+|-.++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 25 QLVGPSDLDGYVSALRKGCR--CLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEecCCCc
Confidence 34568899999999999999 9999999999999999998775
|
This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y) |
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.11 Score=53.19 Aligned_cols=42 Identities=24% Similarity=0.160 Sum_probs=38.0
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
-..-+-|.++|..|+..|+. .||+|++=-+||.|||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 25 QLKGESSVELYSQVLLTGCR--CVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 34567889999999999999 9999999999999999999875
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core |
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.11 Score=53.00 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=37.1
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+|++=-.||.|||+|-.|+
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 26 LLSQSKVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred ccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 3556789999999999999 9999999999999999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.11 Score=53.30 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=37.4
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+||+=-.||.|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 26 LRGQSSVEGYIRALKRGCR--CVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred ccCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 3557799999999999999 9999999999999999999876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which |
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.11 Score=53.32 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=37.4
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+||+=-.||.|||+|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCR--CVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred ccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 4556799999999999999 9999999999999999998865
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh |
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.14 Score=51.77 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=37.6
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
-.+-+-|.++|..|+..|+. .||+||+=-.||.|||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 25 QLAGDSSVEGYIRALQRGCR--CVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred ccCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 34567889999999999999 9999999988999999998765
|
This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro |
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.13 Score=52.58 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=37.4
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+|++=-.||.|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred cCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 4567789999999999999 9999999999999999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain |
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.13 Score=52.59 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+||+=-.||.|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 26 LRSESSTEAYIRCLRMGCR--CIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCCCHHHHHHHHHcCCc--EEEEEeecCCCCCeEEeeCCCc
Confidence 3456788999999999999 9999999999999999998775
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.14 Score=52.62 Aligned_cols=41 Identities=22% Similarity=0.099 Sum_probs=37.5
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+|++=-.||.|||+|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCR--CVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 4567899999999999999 9999999999999999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.085 Score=60.54 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=39.4
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
..-|.++.||.+|+.+||.+||+|.+=-.||.||++|..|+.
T Consensus 333 lrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~T 374 (1267)
T KOG1264|consen 333 LRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTRT 374 (1267)
T ss_pred cccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEecccee
Confidence 467999999999999999999999999999999999998853
|
|
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.16 Score=51.97 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=36.5
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEec--CCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTk--Dg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+||+=-. ||.|||+|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCR--CIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCC
Confidence 4567889999999999999 9999999765 789999998876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.21 Score=51.16 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEec--CCeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTk--Dg~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+|++=-. ||.|||+|..++
T Consensus 26 l~g~ss~e~y~~aL~~GcR--cvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 26 LAGNSSVEMYRQVLLSGCR--CVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCC--EEEEEeeCCCCCCCCCEEeeCCCc
Confidence 4457789999999999999 9999999776 689999999865
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.21 Score=51.27 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=36.7
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEec--CCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTk--Dg~~vv~HD~~l 145 (667)
-..-+-|.++|..|+..|+. .||+||+=-. ||.|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 25 QFSGLSSPEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCc
Confidence 34567799999999999999 9999999653 789999999876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.27 Score=50.34 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=36.8
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeEecC--CeEEEccCCCC
Q 005970 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKD--EAGICFPDLKL 145 (667)
Q Consensus 103 ~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkD--g~~vv~HD~~l 145 (667)
..-+-|.++|..|+..|+. .||+||+=-.| |.|||+|-.++
T Consensus 26 l~g~ss~e~y~~aL~~GcR--cvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCR--CIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCCCCEEeeCCCC
Confidence 4567889999999999999 99999998875 99999998876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod |
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.34 Score=49.82 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=36.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeEe--cCCeEEEccCCCC
Q 005970 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLT--KDEAGICFPDLKL 145 (667)
Q Consensus 102 ~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lT--kDg~~vv~HD~~l 145 (667)
-..-+-|.+||..|+..|+. .||+||+=- .|+.|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 25 QLTGLSSVEMYRQVLLTGCR--CIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred ccCCccCHHHHHHHHHcCCC--EEEEEecCCCCCCCCCEEeeCCcc
Confidence 34568889999999999999 999999965 3579999999875
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.26 Score=56.79 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=42.5
Q ss_pred EEeCC---CCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 95 VARGG---FSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 95 iaHRG---~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
..|-- |--..-|.|++||.+|+.+|+. .||+|.+=-.||.+|++|..|+
T Consensus 322 SSHNTYLTGDQlrSESSleaYar~LrMGCR--CIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 322 SSHNTYLTGDQLRSESSLEAYARCLRMGCR--CIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred ccCcceecccccccccCHHHHHHHHHhCCe--EEEeecccCCCCCceEEeccce
Confidence 45554 2334689999999999999999 9999999999999999999985
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.4 Score=55.04 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=43.1
Q ss_pred ceeEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 407 NLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 407 ~~~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
-.+-.+|.-+ .-..-+-|..+|.+|+..||..||+|++=-.+|.|||+|..++..
T Consensus 124 YfI~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t~ 181 (598)
T PLN02230 124 YFIFTGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLTK 181 (598)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCcC
Confidence 3445556532 234456688999999999999999999987788999999988754
|
|
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.5 Score=43.23 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHCCCCeEEcceeeec------CCeEEEeccC
Q 005970 422 SCTNLAYQKAISDGVDFIDCPVQMSK------DGVPFCLSFI 457 (667)
Q Consensus 422 ENTl~Af~~A~~~Gad~iE~DV~lTk------Dg~~Vv~HD~ 457 (667)
=|+.+..+.|+...+.+||.||.+-+ +++||..|-+
T Consensus 11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP 52 (244)
T PF10223_consen 11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPP 52 (244)
T ss_pred cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCC
Confidence 38889999999999999999999984 6677777754
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.74 Score=52.62 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=36.3
Q ss_pred CCCchhHHHHHHHHHCCCCeEEcceeeecCCe-EEEeccCcccc
Q 005970 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLIN 461 (667)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~-~Vv~HD~~L~r 461 (667)
..-+-|..+|.+|+..||..||+|++=-.||. |||+|..++..
T Consensus 130 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ts 173 (567)
T PLN02228 130 VNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLTS 173 (567)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCcccC
Confidence 45677899999999999999999999555565 89999988754
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.44 E-value=0.92 Score=52.52 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=46.6
Q ss_pred ccCCceeEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 403 SKSANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 403 ~~~~~~~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
+...-.+--+|--+ .-..-+-++.+|-.|++.||..||+|++=-.+|.|||+|-.|+.-
T Consensus 294 PLsHYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~TlTs 355 (746)
T KOG0169|consen 294 PLSHYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTLTS 355 (746)
T ss_pred cchhheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCccccc
Confidence 33444555666642 223458899999999999999999999999999999999998753
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.86 E-value=14 Score=38.07 Aligned_cols=185 Identities=13% Similarity=0.130 Sum_probs=95.5
Q ss_pred HHHHHHHhhcCCceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhH-HhhcHHHHHh-hcceecCCCcc
Q 005970 239 SFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS-LLKNLTFIKT-FASGILVPKDY 316 (667)
Q Consensus 239 ~~l~~~l~~~~~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~-~~~~l~~i~~-~a~~i~~~~~~ 316 (667)
+.+++.+.+.+...+++ .+..++...+... .+.+++..+.....+.+.. |.. +...+++..+ -+++++... +
T Consensus 46 e~~v~~v~~~g~dav~~-~~G~~~~~~~~y~-~dvplivkl~~~t~l~~~~---~~~~~~~~ve~ai~lgadAV~~~V-y 119 (265)
T COG1830 46 ENIVAKVAEAGADAVAM-TPGIARSVHRGYA-HDVPLIVKLNGSTSLSPDP---NDQVLVATVEDAIRLGADAVGATV-Y 119 (265)
T ss_pred HHHHHHHHhcCCCEEEe-cHhHHhhcCcccc-CCcCEEEEeccccccCCCc---ccceeeeeHHHHHhCCCcEEEEEE-e
Confidence 34566666666654433 5556666655432 2566666554443333222 221 1123443332 244443211 1
Q ss_pred ccccCCCCCCCCChHHHHHHHHcCCeEEEEeccC-CCC-cccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhh
Q 005970 317 IWPVDESLYLLPHTTIVLDAHKERLEVFASNFAN-DIP-ISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDC 394 (667)
Q Consensus 317 ~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~-~~~-~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~ 394 (667)
+........+..-...++.||+.|+.+..|..-. ... ..+....|-.....++-. ++|+|.|=|+||..-..+.+-
T Consensus 120 ~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaa--elGADIiK~~ytg~~e~F~~v 197 (265)
T COG1830 120 VGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAA--ELGADIIKTKYTGDPESFRRV 197 (265)
T ss_pred cCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHH--HhcCCeEeecCCCChHHHHHH
Confidence 1111111112222458899999999999997642 211 111111122222222322 566999999999755444433
Q ss_pred hhhcCcCcccCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeE
Q 005970 395 FAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (667)
Q Consensus 395 ~~~~~~~~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~i 439 (667)
... . +-|.|++ -|.++.-++..+..-..|++.||.++
T Consensus 198 v~~-----~--~vpVvia-GG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 198 VAA-----C--GVPVVIA-GGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred HHh-----C--CCCEEEe-CCCCCCChHHHHHHHHHHHHccCcch
Confidence 221 1 1355554 23344588999999999999999875
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=84.28 E-value=1.2 Score=51.25 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=41.2
Q ss_pred eeEEEecC---CCCCCCchhHHHHHHHHHCCCCeEEcceeeecCC-eEEEeccCcccc
Q 005970 408 LLVISKNG---ASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG-VPFCLSFINLIN 461 (667)
Q Consensus 408 ~~iiaHRG---~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg-~~Vv~HD~~L~r 461 (667)
.+-.+|.- +.-..-+-|..+|.+|+..||..||+|++=-.|| .|||+|..++..
T Consensus 133 fI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ts 190 (599)
T PLN02952 133 FIYTGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTLTT 190 (599)
T ss_pred eeeccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcccc
Confidence 44455653 2234567789999999999999999999966655 489999988754
|
|
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
Probab=83.94 E-value=4.6 Score=41.30 Aligned_cols=36 Identities=19% Similarity=0.063 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHcCCCCcEEEeeeeEec------CCeEEEccCC
Q 005970 106 DSSSIAYSLTLITSAPSVILWCDVQLTK------DEAGICFPDL 143 (667)
Q Consensus 106 ENTl~a~~~A~~~g~d~~~vE~Dv~lTk------Dg~~vv~HD~ 143 (667)
=|+.+.++.|++..+. +||.||.+-+ +++||+.|.+
T Consensus 11 vNsk~~L~~aL~~~~~--miEaDV~l~~~~~~~~~~~PIMahPP 52 (244)
T PF10223_consen 11 VNSKAELEEALSSDIM--MIEADVLLGGLNTGNEDGIPIMAHPP 52 (244)
T ss_pred cCCHHHHHHHhCCCCC--EEEEEEEeecccCCCCCCCceeeCCC
Confidence 3889999999999998 9999999984 7888888875
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=82.60 E-value=7.3 Score=41.21 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=57.9
Q ss_pred hHHHHHHHHcCCeEEEEeccCCCCcccCCCCCh--HH-HHHHHHhCCCcccceEecCCC-----CCchhhhhhhhhcCcC
Q 005970 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDP--LT-EYLSFIDNGDFSVDGVLSDFP-----LTPSAAVDCFAHLGKN 401 (667)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~--~~-e~~~li~~G~~gVDGIiTD~P-----~~~~~~l~~~~~~~~~ 401 (667)
.++++.||+.|+.+.+|..-...... -..|+ .. ..+... +||+|.|=|+|| .....+.+....
T Consensus 157 ~~v~~ea~~~GlPll~~~yprG~~i~--~~~~~~~ia~aaRiaa---ELGADIVKv~y~~~~~~g~~e~f~~vv~~---- 227 (304)
T PRK06852 157 AQIIYEAHKHGLIAVLWIYPRGKAVK--DEKDPHLIAGAAGVAA---CLGADFVKVNYPKKEGANPAELFKEAVLA---- 227 (304)
T ss_pred HHHHHHHHHhCCcEEEEeeccCcccC--CCccHHHHHHHHHHHH---HHcCCEEEecCCCcCCCCCHHHHHHHHHh----
Confidence 45789999999999999874321110 00111 11 123334 455999999999 433333332211
Q ss_pred cccCCceeEEEecCCCCCCCchhHHHHHHHHH-CCCCeEE
Q 005970 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAIS-DGVDFID 440 (667)
Q Consensus 402 ~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~-~Gad~iE 440 (667)
-++.|.+|+ |++..-.+-.+.-.+.|++ .||.++=
T Consensus 228 --~g~vpVvia--GG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 228 --AGRTKVVCA--GGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred --CCCCcEEEe--CCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 123455554 5555555667788888989 8988763
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=81.96 E-value=1.5 Score=50.54 Aligned_cols=52 Identities=8% Similarity=-0.005 Sum_probs=43.2
Q ss_pred EEEEeCC---CCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCc
Q 005970 93 FVVARGG---FSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (667)
Q Consensus 93 ~iiaHRG---~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~ 146 (667)
+-.+|.- |.-..-+-|.++|..|+..|+. .||+|++=-.+|.|||+|..++-
T Consensus 126 I~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~t~t 180 (598)
T PLN02230 126 IFTGHNSYLTGNQLSSNCSELPIADALRRGVR--VVELDLWPRGTDDVCVKHGRTLT 180 (598)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEeccCCCCCCcEEeeCCCCc
Confidence 4567774 2345667799999999999999 99999998788999999998863
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=81.29 E-value=1.3 Score=50.18 Aligned_cols=39 Identities=10% Similarity=-0.010 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 422 SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 422 ENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
+-|..+|.+|+..||..||+|++=-.++.++|.|-.++.
T Consensus 134 ~ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tlt 172 (537)
T PLN02223 134 LYSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNFE 172 (537)
T ss_pred cccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCcee
Confidence 378999999999999999999995455567899998864
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=81.27 E-value=1.7 Score=49.79 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=40.8
Q ss_pred ceeEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCe-EEEeccCcccc
Q 005970 407 NLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLIN 461 (667)
Q Consensus 407 ~~~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~-~Vv~HD~~L~r 461 (667)
-.+-.+|.-+ .-..-+-|..+|.+|+..||..||+|++=-.||. |+|+|-.++..
T Consensus 112 YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt~ 170 (581)
T PLN02222 112 YFIFTGHNSYLTGNQLSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLTT 170 (581)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCcccC
Confidence 3444556531 2345577889999999999999999999655654 57999987654
|
|
| >cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C | Back alignment and domain information |
|---|
Probab=80.35 E-value=2.3 Score=44.46 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 421 PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
-.....++..+++.|+.++|+||+-.+|+.++|+|..++.
T Consensus 33 ~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~~ 72 (274)
T cd00137 33 GLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTFL 72 (274)
T ss_pred CcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCccc
Confidence 5788999999999999999999999999999999987654
|
This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 667 | ||||
| 1t8q_A | 336 | Structural Genomics, Crystal Structure Of Glyceroph | 8e-04 |
| >pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From E. Coli Length = 336 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 1e-21
Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 52/364 (14%)
Query: 68 GVIAQVSAQGSNATSRWQTLTGDPPFVVA-RGGFSGIFPDSSSIAYSLTLITSAPSVILW 126
+ + S + V+A RG SG P+ + A ++ A L
Sbjct: 7 NLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGA-SGYLPEHTLPAKAMAYAQGAD--YLE 63
Query: 127 CDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDL---- 182
D+ +TKD+ + D LD +++A F + + +++ID+TL+++
Sbjct: 64 QDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRAR-------KDGRYYAIDFTLDEIKSLK 116
Query: 183 ------SNIILNQGVYSRTDKFDGNGFQILTVQDM--------ARQIKPPGLWLNIQHDA 228
Y + F++ T ++ K G++ I+
Sbjct: 117 FTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPW 176
Query: 229 FYAQHNLSMRSFVLSVSRSVVVN------YISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
F+ Q + + L V + Y+ + + L+ I P M +
Sbjct: 177 FHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLI 236
Query: 283 SEIEP-----------TTNQTYGSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPH 329
+ + N Y + K + + +A GI + +
Sbjct: 237 AYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKL 296
Query: 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389
T +V DA + +L V +D + + L + L + G V+G+ +DFP
Sbjct: 297 TGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL-YNKAG---VNGLFTDFPDKAV 352
Query: 390 AAVD 393
++
Sbjct: 353 KFLN 356
|
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 2e-18
Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 16/215 (7%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ S +VI+ GASG P T A A + G D+++ + M+KD L L
Sbjct: 25 AADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDR 84
Query: 462 STNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTL-----IPQISNPYFKFKLFRNP 516
T+ A + G ++ DEI++L + + R P
Sbjct: 85 VTDVADRFPDRARKD------GRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFP 137
Query: 517 KNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV---YLAEKQGMSVTNSVMEALGNAG 573
K+ + + +E + N +G I I + + ++G + +E L G
Sbjct: 138 MGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYG 197
Query: 574 YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVK 608
Y + KV +Q D+ L +++ + ++ ++
Sbjct: 198 YTGKDD-KVYLQCFDADELKRIKNELEPKMGMELN 231
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 33/211 (15%), Positives = 73/211 (34%), Gaps = 17/211 (8%)
Query: 391 AVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV 450
++ F+ L + + VI GA G P T + ++ GV ++ V M+ DGV
Sbjct: 1 GMNGFSQLEGLRGHPSVVRVIGHRGARGVMPENTLEGFAFTLAAGVRALEFDVVMTADGV 60
Query: 451 PFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTL-IPQISNPYFK 509
P +L N+ + G+ + + EI+ L + +
Sbjct: 61 PVVTHNHHLANAMT---------RDGQGHWLTGAERQVAEMTYAEIRALDVGGLDGRTVY 111
Query: 510 FKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVL---ISIENAVYLAEKQGMSVTNSVM 566
+ F + +L + L++ + L + + A+ + +V+
Sbjct: 112 GRRFPDQAFLTGIHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVL 171
Query: 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLRE 597
+ + ++ S D ++L + R
Sbjct: 172 ADVRRYRMEPR----TVMHSFDWALLGECRR 198
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 1e-12
Identities = 58/366 (15%), Positives = 107/366 (29%), Gaps = 118/366 (32%)
Query: 19 LSLSLSKEEKSRTFIKRIGGAPAELNLSEMCNTRALGLLLVSALVVLHCGVIAQVSAQGS 78
S++L+ +E +K + P +L E+ T +IA+ G
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPR-----------RLSIIAESIRDGL 341
Query: 79 NATSRWQTLTGD-------------PPFVVARGGFS--GIFPDSSSIAYSLTLITSAPSV 123
W+ + D P R F +FP S+ I L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFPPSAHIPTI-LL------S 393
Query: 124 ILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS 183
++W DV + + KL S + + Q K ++ +
Sbjct: 394 LIWFDVIKSDVMVVVN----KLHKYSLVEK----QPKEST-------------ISIPSIY 432
Query: 184 --------------NIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPP--GLWLN-IQH 226
I++ Y+ FD + I P + + I H
Sbjct: 433 LELKVKLENEYALHRSIVDH--YNIPKTFDSDDL-----------IPPYLDQYFYSHIGH 479
Query: 227 DAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLR------SIAARFRPSMTKLV--FR 278
+H M F R V +++ FL S A S+ + +
Sbjct: 480 HLKNIEHPERMTLF-----RMVFLDF------RFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 279 FLGK--SEIEPTTNQTYGSLLKNLTFIKTFASGILVPK--DYIWPVDESLYLL-PHTTIV 333
F + +P + ++L F+ ++ K D + + L+ I
Sbjct: 529 FYKPYICDNDPKYERLVNAILD---FLPKIEENLICSKYTDLL-----RIALMAEDEAIF 580
Query: 334 LDAHKE 339
+AHK+
Sbjct: 581 EEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 53/386 (13%), Positives = 113/386 (29%), Gaps = 112/386 (29%)
Query: 357 NYSY-DPLTEYL-SFIDNGDFSVDGVLSDFP---LTPSAAVDCFAHLGKNASKSANLL-V 410
Y Y D L+ + +F+D +F V D P L+ +D S + L
Sbjct: 15 QYQYKDILSVFEDAFVD--NFDCKDVQ-DMPKSILS-KEEIDHIIMSKDAVSGTLRLFWT 70
Query: 411 ISKNGASG-----------DYP---SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSF 456
+ +Y S ++ +I+ ++ D F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 457 INLINSTNAAQSKFNSITTTIPEI----------MAGSG----------------IFSFS 490
++ + + + + E+ + GSG F
Sbjct: 131 VSRL-------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 491 LIW-------------DEIQTLIPQISNPYFK--FKLFRNPKNKNAGKFMKLSDFLEMAK 535
+ W + +Q L+ QI + ++ + +L L+
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKP 242
Query: 536 NANSLSGVLISIENAVYLAEKQGMSVTNS-VMEALGNAGYNKQTALKVMIQSTDSSVLMK 594
N L L+ L V N+ A + K+++ + V
Sbjct: 243 YENCL---LV-------LLN-----VQNAKAWNAFNLS-------CKILLTTRFKQVTDF 280
Query: 595 LREKTSYELVY----------KVKENIRDALNQTIEDIKKFADSVV-LTMSLY--LKRGT 641
L T+ + +VK + L+ +D+ + + +S+ R
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 642 SSQTQLWRSTHITRELVLMELLQNSL 667
+ W+ H+ + L ++++SL
Sbjct: 341 LATWDNWK--HVNCD-KLTTIIESSL 363
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 48/233 (20%), Positives = 79/233 (33%), Gaps = 59/233 (25%)
Query: 415 GASGDYPSCTNLAYQKAISD-GVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFN 471
GASG P T AY K+ ++ +I+ +Q +KDG + +N
Sbjct: 31 GASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNR------------ 78
Query: 472 SITTTIPEIMAGSG-IFSFSLIWDEIQTL-------IPQISNPYFKFKLFRNPKNKNAGK 523
TT G G + ++ DE++ L +K + P
Sbjct: 79 --TTN------GHGKVEDYT--LDELKQLDAGSWFNKKYPKYARASYKNAKVP------- 121
Query: 524 FMKLSDFLEMAKNANSLSGVLISIE---NAVY--LAEKQGMSVTNSVMEALGNAGYNKQT 578
L + LE IE VY + E+ + ++ NK
Sbjct: 122 --TLDEILERYGP-----NANYYIETKSPDVYPGMEEQ-----LLASLKKHHLLNNNKLK 169
Query: 579 ALKVMIQSTDSSVLMKLREKT-SYELVYKVKENIRDALN-QTIEDIKKFADSV 629
VMIQS L K+ + LV V + N Q +++I+ +A +
Sbjct: 170 NGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGL 222
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 59/330 (17%), Positives = 102/330 (30%), Gaps = 84/330 (25%)
Query: 75 AQGSNATSRWQTLTGDPPFVVA-RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK 133
A A LT + +A RG SG P+ + AY + S I D+Q TK
Sbjct: 7 ANKPQAIQWHTNLTNERFTTIAHRGA-SGYAPEHTFQAYDKSHNELKASYIE-IDLQRTK 64
Query: 134 DEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQG--- 190
D + D ++ +N DYTL++L L+ G
Sbjct: 65 DGHLVAMHDETVNRTTNGH-------------------GKVEDYTLDELKQ--LDAGSWF 103
Query: 191 --VYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQ--HDAFY-----------AQHNL 235
Y + + ++ T+ ++ + P I+ Y +H+L
Sbjct: 104 NKKYPKYARASYKNAKVPTLDEILERYGP-NANYYIETKSPDVYPGMEEQLLASLKKHHL 162
Query: 236 SMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS 295
+ + V+ I S L+ I R + LV + K E++ +Q
Sbjct: 163 LNNN---KLKNGHVM--IQSFSDESLKKIH-RQNKHV-PLVK-LVDKGELQQFNDQ---- 210
Query: 296 LLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPIS 355
L I+++A G+ + V
Sbjct: 211 ---RLKEIRSYAIGLGPDYTDLTE-----------QNTHHLKDLGFIVHP---------- 246
Query: 356 FNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385
Y+ + + L G VDGV ++F
Sbjct: 247 --YTVNEKADMLRLNKYG---VDGVFTNFA 271
|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 30/192 (15%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474
G G P T A+ KA+ GV ++ + +SKD +
Sbjct: 16 GCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFFHHEITM-----MVDG 70
Query: 475 TTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKF----MKLSDF 530
+ E + ++ + +I+ + + +P+ K+ K +
Sbjct: 71 EDVTEANEKNFNLY-AMNYADIKEI---------DVGMKTHPRFKSQKKVPAVKPLFREL 120
Query: 531 LEMAKNANSLSGVLISIE-----NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
+E A+ + + + + E + + V+ + A + +Q
Sbjct: 121 IETAEKLS--AKIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITDR----FTLQ 174
Query: 586 STDSSVLMKLRE 597
S D L +
Sbjct: 175 SFDVRALEYMHS 186
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 51/182 (28%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNS 472
G P + A AI+ VD ++ +Q +KDG + + ++
Sbjct: 25 GNWRSAPENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDR------------- 71
Query: 473 ITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLE 532
TTT G G + +I+ L ++ + K + P L + L
Sbjct: 72 -TTT------GKGEIK-NWTLADIKKL--KLKDKDGKVTNYVVP---------TLEEALL 112
Query: 533 MAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVL 592
AK ++++++ A + + V L Q V+++
Sbjct: 113 TAKG-----KIMVNLDKAYDIFDD--------VYAILEKTETQNQ----VIMKGGQPIET 155
Query: 593 MK 594
+K
Sbjct: 156 VK 157
|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
GA+ P T A A+ G D+I+ V+ S DGV + +
Sbjct: 9 GANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVI 48
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
G S + P T A+++A+ G D I+ VQ++KDG +
Sbjct: 19 GDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVI 58
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
G P T A G I+ ++SKDG F L
Sbjct: 14 GGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLL 53
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
G+SG P T + A G+ +++ V +S DG+P
Sbjct: 17 GSSGQAPENTLASLHLAGQQGIKWVEIDVMLSGDGIPVIF 56
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
GA T +++ A+ G+D ++ V ++DGV
Sbjct: 15 GAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVR 54
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 4/40 (10%), Positives = 15/40 (37%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
G + ++ T + + ++ ++ + + DG
Sbjct: 10 GGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVVH 49
|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
G S Y T A+ KAI G + ++ V++SKDG
Sbjct: 20 GYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVV 58
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 66/224 (29%)
Query: 376 SVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDG 435
+VD ++S + H G G YP + ++ +S
Sbjct: 16 NVDDLISFYQYADDRIPLISGHRG---------------GRGKGYPENSMETFENTLSYT 60
Query: 436 VDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIW 493
+ +++KD V + T+ G+G S W
Sbjct: 61 PATFEIDPRLTKDSVIVLFHDDTLER--------------TSN------GTGKVS-DYTW 99
Query: 494 DEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYL 553
+E+Q ++ +P +R P L + + A+ ++ ++
Sbjct: 100 EELQNF--RLKDPEGNITNYRIP---------TLEEAIRWARGK-----TILILDKKDVP 143
Query: 554 AEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE 597
E+ + + + VMI D + E
Sbjct: 144 MER--------TAQLITDMQAEPY----VMITVHDGASARFFYE 175
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 23/226 (10%), Positives = 59/226 (26%), Gaps = 59/226 (26%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL---SFINLINSTNAAQSKFN 471
G G P T ++ + + +I+ +++ K G + +
Sbjct: 16 GKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKD------- 68
Query: 472 SITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAG---KFMKLS 528
G+ L +E++ L + G L
Sbjct: 69 -----------GTSRIG-DLSLEELKRL--------------------DVGGGHTIPSLE 96
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
+ + + + ++ + ++ G ++ + ++ V S
Sbjct: 97 ELFVAIEEQKFNLKLNLELKGEEWKRKESGD--HQRLLLLVEKYHMQER----VDYCSFH 150
Query: 589 SSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSV 629
L L+ K +Y L + + + A+ V
Sbjct: 151 HEALAHLKALCPDVKITY-LFNYMGQPTPLDFVEQACYGD--ANGV 193
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 416 ASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
+ + + ++A G + V ++ D V
Sbjct: 15 KTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVV 52
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| 1ydy_A | 356 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 100.0 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 2oog_A | 287 | Glycerophosphoryl diester phosphodiesterase; phosp | 100.0 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3ch0_A | 272 | Glycerophosphodiester phosphodiesterase; YP_677622 | 100.0 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 100.0 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 100.0 | |
| 2oog_A | 287 | Glycerophosphoryl diester phosphodiesterase; phosp | 100.0 | |
| 1zcc_A | 248 | Glycerophosphodiester phosphodiesterase; NYSGXRC, | 100.0 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 1ydy_A | 356 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3ch0_A | 272 | Glycerophosphodiester phosphodiesterase; YP_677622 | 100.0 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 1o1z_A | 234 | GDPD, glycerophosphodiester phosphodiesterase; TM1 | 100.0 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 100.0 | |
| 1zcc_A | 248 | Glycerophosphodiester phosphodiesterase; NYSGXRC, | 100.0 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 1o1z_A | 234 | GDPD, glycerophosphodiester phosphodiesterase; TM1 | 100.0 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 1xx1_A | 285 | Smase I, sphingomyelinase I; structure, quick cryo | 99.97 | |
| 1xx1_A | 285 | Smase I, sphingomyelinase I; structure, quick cryo | 99.95 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 99.84 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 99.62 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 92.37 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 91.08 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 90.45 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 88.58 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 87.99 | |
| 3h4x_A | 339 | Phosphatidylinositol-specific phospholipase C1; PI | 87.12 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 86.91 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 85.84 |
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=411.28 Aligned_cols=286 Identities=20% Similarity=0.331 Sum_probs=215.7
Q ss_pred CCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCC
Q 005970 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (667)
Q Consensus 89 ~~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~ 168 (667)
+.+|+||||||+++.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|||++.+.|+.+++. +|.
T Consensus 28 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~f~~~~~~---~g~- 101 (356)
T 1ydy_A 28 SNEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---DGR- 101 (356)
T ss_dssp -CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT---TSC-
T ss_pred CCCceEEEeCCCCCCCCcchHHHHHHHHHcCCC--EEEeeeEECCCCcEEEeCCChHHhhcCccccccccccc---CCC-
Confidence 457999999999999999999999999999999 99999999999999999999999999988878776543 333
Q ss_pred CCccccccCCHHhhccccccccccC--------CCCCCC---CCCCccCCHHHHHHhhC--------CCceEEeccCchh
Q 005970 169 TPGWFSIDYTLNDLSNIILNQGVYS--------RTDKFD---GNGFQILTVQDMARQIK--------PPGLWLNIQHDAF 229 (667)
Q Consensus 169 ~~g~~v~d~t~~el~~l~~~~~~~~--------~~~~~~---~~~~~iptL~e~l~~~~--------~~~~~ieiK~~~~ 229 (667)
++|.|+||+||++|+++.|+.. ++..|. + +++||||+|+|++++ +.+++||+|.+..
T Consensus 102 ---~~v~d~T~~eL~~l~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~ 177 (356)
T 1ydy_A 102 ---YYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKS-DFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWF 177 (356)
T ss_dssp ---CBGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCS-CCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHH
T ss_pred ---cchhhCcHHHHHhCCCCccccccccccccccccccccccC-CCcCCCHHHHHHHHHHhhhcccCCceEEEeecCccc
Confidence 6899999999999999987631 122332 2 469999999999985 4789999998765
Q ss_pred hhhcCCcHHHHHHHHHhhcCC------ceEecCCHHHHHHHHhhh----CCCCCceEEEeccCCccCC---------CCC
Q 005970 230 YAQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAARF----RPSMTKLVFRFLGKSEIEP---------TTN 290 (667)
Q Consensus 230 ~~~~~~~~~~~l~~~l~~~~~------~~i~SFd~~~L~~l~~~~----~~~~~~~~~~l~~~~~~~~---------~~~ 290 (667)
....+..+++.++++++++++ ++|+|||+..|+++++.. .| +.++++ ++....+.. ..+
T Consensus 178 ~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~l~~~~~~~~p~~~p-~~~~~~-L~~~~~~~~~~~~~~~~~~~~ 255 (356)
T 1ydy_A 178 HHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGM-ELNLVQ-LIAYTDWNETQQKQPDGSWVN 255 (356)
T ss_dssp HHHTTCCHHHHHHHHHHHTTCCSTTSSBEEEESCHHHHHHHHHTHHHHHTC-CCEEEE-EECCGGGCCCEEECTTSCEEE
T ss_pred ccccchhHHHHHHHHHHHcCCCCCCCCEEEEcCCHHHHHHHHhhcccccCC-CceEEE-EeccCcccccccccccccccc
Confidence 544455788999999999875 499999999999999972 23 577776 433221110 011
Q ss_pred cchhHHh--hcHHHHHhhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHH-H
Q 005970 291 QTYGSLL--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEY-L 367 (667)
Q Consensus 291 ~~y~~~~--~~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~-~ 367 (667)
..|.++. ..+..+..++.+++|.+..+.+.........++++|+.+|++|++|++||||++... .|..|+ .++ +
T Consensus 256 ~~~~~~~~~~~l~~~~~~a~~i~p~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~l~--~~~~d~-~~~~~ 332 (356)
T 1ydy_A 256 YNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLP--EYTPDV-NQLYD 332 (356)
T ss_dssp CCCGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSCC--TTCSSH-HHHHH
T ss_pred cchhhhcchhhHHHHHhhCeEEccCHHHhccccccccccCCHHHHHHHHHCCCEEEEEEECccccc--ccccCH-HHHHH
Confidence 2344432 246777778999999877665321111112346799999999999999999987321 223344 555 6
Q ss_pred H-HHhCCCcccceEecCCCCCchhhh
Q 005970 368 S-FIDNGDFSVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 368 ~-li~~G~~gVDGIiTD~P~~~~~~l 392 (667)
+ ++++| |||||||+|+++++++
T Consensus 333 ~~l~~~G---VDgIiTD~P~~~~~~l 355 (356)
T 1ydy_A 333 ALYNKAG---VNGLFTDFPDKAVKFL 355 (356)
T ss_dssp HHHTTSC---CSEEEESCHHHHHHHH
T ss_pred HHHHHcC---CCEEEeCCHHHHHHhh
Confidence 5 55666 9999999999887765
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=373.47 Aligned_cols=242 Identities=19% Similarity=0.167 Sum_probs=191.5
Q ss_pred ccccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccc
Q 005970 84 WQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (667)
Q Consensus 84 ~~~~~~~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~ 163 (667)
|++..+..|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 2 ~~~~~~~~p~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~----------- 68 (252)
T 3qvq_A 2 MQSAYSFLPQVIAHRGSSGQAPENTLASLHLAGQQGIK--WVEIDVMLSGDGIPVIFHDDYLSRTTDGD----------- 68 (252)
T ss_dssp CSSGGGGCCSEEEETTTTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECCCSBSTTTSSCC-----------
T ss_pred CcccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCcEEEECCCccccccCCC-----------
Confidence 45555667999999999999999999999999999999 99999999999999999999999999943
Q ss_pred cCCCCCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHH
Q 005970 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFV 241 (667)
Q Consensus 164 ~~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l 241 (667)
+.|.++||+||++|+++.|+ ++.|.+ ++||||+|+|++++ +..++||+|...... ..+++.+
T Consensus 69 --------~~v~~~t~~el~~l~~~~~~---~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~~~~---~~~~~~v 132 (252)
T 3qvq_A 69 --------GLIYKTPLAELKQLDAGSWK---GQEYQQ--ETIPTLLEAIEVISQYGMGLNLELKPCEGLE---EETIAAS 132 (252)
T ss_dssp --------SBGGGSCHHHHTTSCSSTTT---CGGGTT--CCCCBHHHHHHHHHHTTCEEEEEECCCTTCH---HHHHHHH
T ss_pred --------ceeecCcHHHHhcCCCCCcc---CccCCC--CcCcCHHHHHHHHhccCcEEEEEecCCCCcc---HHHHHHH
Confidence 37999999999999999875 445665 69999999999985 578999999432111 1356677
Q ss_pred HHHHhhcCC----ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCcc
Q 005970 242 LSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDY 316 (667)
Q Consensus 242 ~~~l~~~~~----~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~ 316 (667)
.+++++++. ++++||++..|+++++.. | +.++.+ +.... +..+ ...+.. -+.++.+.+..
T Consensus 133 ~~~l~~~~~~~~~vii~SF~~~~l~~~~~~~-p-~~~~~~-l~~~~------~~~~------~~~~~~~~~~~i~~~~~~ 197 (252)
T 3qvq_A 133 VEVLKQHWPQDLPLLFSSFNYFALVSAKALW-P-EIARGY-NVSAI------PSAW------QERLEHLDCAGLHIHQSF 197 (252)
T ss_dssp HHHHHHHSCTTSCEEEEESCHHHHHHHHHHC-T-TSCEEE-ECSSC------CTTH------HHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHhCcccCCEEEEeCCHHHHHHHHHHC-C-CCcEEE-EEecC------chhH------HHHHHHcCCeEEecchhh
Confidence 888887653 499999999999999985 3 678776 43211 1111 111111 14444443322
Q ss_pred ccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhhh
Q 005970 317 IWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCF 395 (667)
Q Consensus 317 ~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~ 395 (667)
.++.+|+.+|++|++|++||||+ .++|++++++| |||||||+|+.+++++++.
T Consensus 198 -----------~~~~~v~~~~~~G~~v~~WTvn~------------~~~~~~l~~~G---VdgIiTD~P~~~~~~l~~~ 250 (252)
T 3qvq_A 198 -----------FDVQQVSDIKAAGYKVLAFTIND------------ESLALKLYNQG---LDAVFSDYPQKIQSAIDSH 250 (252)
T ss_dssp -----------CCHHHHHHHHHTTCEEEEECCCC------------HHHHHHHHHTT---CCEEEESSHHHHHHHHHHC
T ss_pred -----------CCHHHHHHHHHCCCEEEEEcCCC------------HHHHHHHHHcC---CCEEEeCCHHHHHHHHHHh
Confidence 24779999999999999999975 37899999888 9999999999999888664
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-45 Score=373.14 Aligned_cols=235 Identities=21% Similarity=0.189 Sum_probs=188.6
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCC
Q 005970 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (667)
Q Consensus 90 ~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (667)
-+|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.
T Consensus 10 ~~p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~----------------- 70 (252)
T 2pz0_A 10 MKTLVIAHRGDSKNVPENTIAAFKRAMELGAD--GIELDVQLTKDGHLVVIHDETVDRTTNGE----------------- 70 (252)
T ss_dssp -CCEEEEETTTTTTSCTTSHHHHHHHHHHTCS--EEEEEEEECTTCCEEECSSSBSTTTSSCC-----------------
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEecCCeEEEEcCCcccccCCCC-----------------
Confidence 36999999999999999999999999999999 99999999999999999999999999943
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC--CceEEeccCchhhhhcCCcHHHHHHHHHhh
Q 005970 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (667)
Q Consensus 170 ~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~--~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~ 247 (667)
+.|.++||+||++|+++.|+ ++.|.+ ++||||+|+|+++++ ..++||+|.+... ...+++.+++++++
T Consensus 71 --g~v~~~t~~eL~~l~~~~~~---~~~~~~--~~iPtL~evL~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~ 140 (252)
T 2pz0_A 71 --GFVKDFTLEEIKKLDAGIKF---GEKFAG--ERIPTLYEVFELIGDKDFLVNIEIKSGIVL---YPGIEEKLIKAIKE 140 (252)
T ss_dssp --SBGGGSCHHHHTTSCSSTTT---CGGGTT--CCCCBHHHHHHHHTTSCCEEEEEECCSSCC---CTTHHHHHHHHHHH
T ss_pred --cchhhCcHHHHhhcCCCCCC---CCCCCC--CcCCCHHHHHHHhhhcCCeEEEEeCCCCcc---cHHHHHHHHHHHHh
Confidence 27999999999999999875 345665 699999999999964 6899999965321 13578899999999
Q ss_pred cCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCccccccCCC
Q 005970 248 VVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDES 323 (667)
Q Consensus 248 ~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~~~~ 323 (667)
++. ++++||++..|+++++.. | +.++.+.+ .... ..+ ...++. .+.++++.+..+
T Consensus 141 ~~~~~~vii~SF~~~~l~~~~~~~-p-~~~~~~l~-~~~~------~~~------~~~~~~~~~~~i~~~~~~~------ 199 (252)
T 2pz0_A 141 YNFEERVIISSFNHYSLRDVKKMA-P-HLKIGLLY-QCGL------VEP------WHMALRMEAYSLHPFYFNI------ 199 (252)
T ss_dssp TTCTTTEEEEESBHHHHHHHHHHC-T-TSEEEEEE-CSBC------SST------HHHHHHTTCSEEEEBGGGC------
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHC-C-CCCEEEEe-cCcc------ccH------HHHHHHcCCeEEecchhcC------
Confidence 875 389999999999999985 3 57777533 2110 011 111111 245555543322
Q ss_pred CCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhh
Q 005970 324 LYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDC 394 (667)
Q Consensus 324 ~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~ 394 (667)
++.+|+.+|++|++|++||||++ .++++++++| |||||||+|+.++++++.
T Consensus 200 -----~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---vdgIiTD~P~~~~~~l~~ 250 (252)
T 2pz0_A 200 -----IPELVEGCKKNGVKLFPWTVDRK------------EDMERMIKAG---VDGIITDDPETLINLVRK 250 (252)
T ss_dssp -----CHHHHHHHHHTTCEECCBCCCSH------------HHHHHHHHHT---CSEEEESCHHHHHHHHC-
T ss_pred -----CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHHcC---CCEEEcCCHHHHHHHHhh
Confidence 47799999999999999999753 7899999888 999999999998887754
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=379.72 Aligned_cols=249 Identities=19% Similarity=0.241 Sum_probs=197.0
Q ss_pred ccc-ccCCCCCEEEEeCCCCCCCCccHHHHHHHH-HHcCCCCcEEEeeeeEecCCeEEEccCCCCccccccccccccccc
Q 005970 83 RWQ-TLTGDPPFVVARGGFSGIFPDSSSIAYSLT-LITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQK 160 (667)
Q Consensus 83 ~~~-~~~~~~~~iiaHRG~~~~~pENTl~a~~~A-~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~ 160 (667)
.|. +..+.+|+||||||+++.+||||++||+.| ++.|+| +||+|||+||||++||+||.+|+|||++.
T Consensus 14 ~~~~~~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~-------- 83 (287)
T 2oog_A 14 QWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKAS--YIEIDLQRTKDGHLVAMHDETVNRTTNGH-------- 83 (287)
T ss_dssp CCCCCTTSCSSEEEETTTTTTTSCSSSHHHHHHHHHTSCCS--EEEEEEEECTTCCEEECSSSBSTTTSSCC--------
T ss_pred cccccCCCCcceEEecCCCCCCCCchhHHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCChhcccCCCC--------
Confidence 444 445678999999999999999999999999 699999 99999999999999999999999999943
Q ss_pred ccccCCCCCCccccccCCHHhhccccccccccCC-----CCCCCCCCCccCCHHHHHHhhC-CCceEEeccCchhhhhcC
Q 005970 161 NYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR-----TDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHN 234 (667)
Q Consensus 161 ~~~~~g~~~~g~~v~d~t~~el~~l~~~~~~~~~-----~~~~~~~~~~iptL~e~l~~~~-~~~~~ieiK~~~~~~~~~ 234 (667)
+.|.|+||+||++|+++.|+... ...|.+ ++||||+|+|++++ +.+++||+|.+...
T Consensus 84 -----------g~v~d~T~~eL~~l~~~~~f~~~~p~~~~~~~~~--~~iPtL~evL~~~~~~~~l~IEiK~~~~~---- 146 (287)
T 2oog_A 84 -----------GKVEDYTLDELKQLDAGSWFNKKYPKYARASYKN--AKVPTLDEILERYGPNANYYIETKSPDVY---- 146 (287)
T ss_dssp -----------SBGGGSCHHHHTTSCSSHHHHHHCGGGCCGGGTT--CCCCBHHHHHHHHCTTSCEEEECCCTTTS----
T ss_pred -----------eehhhCcHHHHHhcCCCcccCccCccccccccCC--ccCCCHHHHHHhhCcCceEEEEECCCCCc----
Confidence 37999999999999998775321 123444 69999999999986 47899999975421
Q ss_pred CcHHHHHHHHHhhcCC----------ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHH
Q 005970 235 LSMRSFVLSVSRSVVV----------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK 304 (667)
Q Consensus 235 ~~~~~~l~~~l~~~~~----------~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~ 304 (667)
..+++.++++++++++ ++|+||++..|.++++.. | +.++++ ++....... ... ..++.+.
T Consensus 147 ~~~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~-p-~~~~~~-l~~~~~~~~---~~~----~~~~~~~ 216 (287)
T 2oog_A 147 PGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQN-K-HVPLVK-LVDKGELQQ---FND----QRLKEIR 216 (287)
T ss_dssp TTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHC-T-TSCEEE-EECTTTGGG---CCH----HHHHHHH
T ss_pred chHHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhC-C-CCcEEE-EecCCcccc---cCH----HHHHHHh
Confidence 2477889999998876 489999999999999985 3 678776 333221100 000 1244555
Q ss_pred hhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCC
Q 005970 305 TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (667)
Q Consensus 305 ~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~ 384 (667)
.++.++++.+..+ ++.+|+.+|++|++|++||||++ ++|++++++| |||||||+
T Consensus 217 ~~~~~v~~~~~~~-----------~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---VdgIiTD~ 270 (287)
T 2oog_A 217 SYAIGLGPDYTDL-----------TEQNTHHLKDLGFIVHPYTVNEK------------ADMLRLNKYG---VDGVFTNF 270 (287)
T ss_dssp TTCSEEEEBGGGC-----------CHHHHHHHHHTTCEECCBCCCSH------------HHHHHHHHHT---CSEEEESC
T ss_pred hhheEEcccHhhc-----------CHHHHHHHHHCCCeEEEEeCCCH------------HHHHHHHHcC---CCEEEeCC
Confidence 6677777654332 46799999999999999999753 7899999888 99999999
Q ss_pred CCCchhhhhh
Q 005970 385 PLTPSAAVDC 394 (667)
Q Consensus 385 P~~~~~~l~~ 394 (667)
|+.+++++..
T Consensus 271 P~~~~~~~~~ 280 (287)
T 2oog_A 271 ADKYKEVIKE 280 (287)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9988777643
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-44 Score=364.20 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=184.8
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (667)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 6 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~R~t~~~------------------ 65 (247)
T 2otd_A 6 YPRIVAHRGGGKLAPENTLAAIDVGAKYGHK--MIEFDAKLSKDGEIFLLHDDNLERTSNGW------------------ 65 (247)
T ss_dssp CCSEEETTTTTTSSCSSSHHHHHHHHHTTCS--EEEEEEEECTTCCEEECSSSBSSTTSSCC------------------
T ss_pred CCeEEECCCCCCCCCchhHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCCccccCCCC------------------
Confidence 5789999999999999999999999999999 99999999999999999999999999943
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
+.|.|+||+||++|+++.|+ .+.|.+ ++||||+|+|++++ +..++||+|.+.... ..+++.++++++++
T Consensus 66 -g~v~~~t~~eL~~l~~g~~~---~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~l~~~ 136 (247)
T 2otd_A 66 -GVAGELNWQDLLRVDAGSWY---SKAFKG--EPLPLLSQVAERCREHGMMANIEIKPTTGTG---PLTGKMVALAARQL 136 (247)
T ss_dssp -SBGGGSCHHHHTTCCSSTTT---CGGGTT--CCCCBHHHHHHHHHHTTCEEEEEECCCTTCH---HHHHHHHHHHHHHH
T ss_pred -ccHhhCcHHHHhhCCCCCcc---CCCCCC--CcCCCHHHHHHHHHhcCCEEEEEECCCCCcc---hHHHHHHHHHHHHH
Confidence 27999999999999999875 345665 69999999999985 578999999654221 12456778888765
Q ss_pred --C--CceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCccccccCCC
Q 005970 249 --V--VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDES 323 (667)
Q Consensus 249 --~--~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~~~~ 323 (667)
+ .++++||++..|.++++.. | +.++.+ +.... +..+. +.+.. .+.++.+.+..+
T Consensus 137 ~~~~~~v~i~Sf~~~~l~~~~~~~-p-~~~~~~-l~~~~------~~~~~------~~~~~~~~~~i~~~~~~~------ 195 (247)
T 2otd_A 137 WAGMTPPLLSSFEIDALEAAQQAA-P-ELPRGL-LLDEW------RDDWR------ELTARLGCVSIHLNHKLL------ 195 (247)
T ss_dssp TTTSCCCEEEESCHHHHHHHHHHC-T-TSCEEE-EESSC------CTTHH------HHHHHHTCSEEEEEGGGC------
T ss_pred hcCcCCEEEEcCCHHHHHHHHHHC-C-CCCEEE-EecCC------cccHH------HHHHHcCCeEEecChHhC------
Confidence 3 3589999999999999985 3 577775 32211 11111 11111 145555543221
Q ss_pred CCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhh
Q 005970 324 LYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (667)
Q Consensus 324 ~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~ 393 (667)
++.+|+.+|++|++|++||+|++ .++++++++| |||||||+|+.+.++++
T Consensus 196 -----~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---vdgI~TD~p~~~~~~l~ 245 (247)
T 2otd_A 196 -----DKARVMQLKDAGLRILVYTVNKP------------QHAAELLRWG---VDCICTDAIDVIGPNFT 245 (247)
T ss_dssp -----CHHHHHHHHHTTCEEEEECCCCH------------HHHHHHHHHT---CSEEEESCTTTSCTTCC
T ss_pred -----CHHHHHHHHHCCCEEEEEccCCH------------HHHHHHHHcC---CCEEEeCCHHHHHHHHh
Confidence 47799999999999999999753 7899999888 99999999999887764
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=370.83 Aligned_cols=263 Identities=16% Similarity=0.160 Sum_probs=191.2
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCC
Q 005970 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (667)
Q Consensus 90 ~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (667)
.++.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|||+... +|...
T Consensus 16 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lTkDg~~Vv~HD~~l~rtt~~~~-----------~G~~~ 82 (313)
T 3l12_A 16 SVVRVIGHRGARGVMPENTLEGFAFTLAAGVR--ALEFDVVMTADGVPVVTHNHHLANAMTRDG-----------QGHWL 82 (313)
T ss_dssp TBCEEEEETTTTTTSCTTCHHHHHHHHHTTCC--EEEEEEEECTTSCEEECSSSBCCTTTCBCT-----------TSCBC
T ss_pred CCeEEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEECCchhcccccccC-----------CCccc
Confidence 46889999999999999999999999999999 999999999999999999999999965321 12111
Q ss_pred --CccccccCCHHhhcccccccccc------CC--CCCCCCCCCccCCHHHHHHhhC-----CCceEEeccCchhhhhc-
Q 005970 170 --PGWFSIDYTLNDLSNIILNQGVY------SR--TDKFDGNGFQILTVQDMARQIK-----PPGLWLNIQHDAFYAQH- 233 (667)
Q Consensus 170 --~g~~v~d~t~~el~~l~~~~~~~------~~--~~~~~~~~~~iptL~e~l~~~~-----~~~~~ieiK~~~~~~~~- 233 (667)
.++.|.++||+||++|+++.+.. .+ ...+.| ++||||+|+|++++ +..++||||.+......
T Consensus 83 ~~~~~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~g--~~iptL~evl~~~~~~~~~~~~l~IEiK~~~~~~~~~ 160 (313)
T 3l12_A 83 TGAERQVAEMTYAEIRALDVGGLDGRTVYGRRFPDQAFLTG--IHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDH 160 (313)
T ss_dssp CSSCCBGGGSCHHHHHTSBCSSCCTTSHHHHHSTTSCCCSS--CCCCBHHHHHHHHHTTGGGCCEEEEEECCCGGGTTCH
T ss_pred CCCCcchhcCcHHHHhhCCCCCccccccccccCccccccCC--CcCCCHHHHHHHHHhcCCCCceEEEEEccCCcccccc
Confidence 12589999999999999987311 00 112233 69999999999985 46899999976432210
Q ss_pred --CCcHHHHHHHHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCC------C-CCcchhHHhhcH-
Q 005970 234 --NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEP------T-TNQTYGSLLKNL- 300 (667)
Q Consensus 234 --~~~~~~~l~~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~y~~~~~~l- 300 (667)
...+++.++++++++++ ++++||++..|+++++.. | ++++.+.......+.. . ....|..+...+
T Consensus 161 ~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~-p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (313)
T 3l12_A 161 AARAEMVAAVLADVRRYRMEPRTVMHSFDWALLGECRRQA-P-DLPTSYLSQLPENADDPGEDSAKPVGPDYDRMTESLP 238 (313)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHC-T-TSCEEEEECCCC-------------CCCTTTCCSCHH
T ss_pred ccHHHHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHC-C-CCcEEEEeccccccccccccccccccccchhccccHH
Confidence 12578889999999876 399999999999999985 3 6788763321110000 0 000010000001
Q ss_pred HHHHhh-cceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccce
Q 005970 301 TFIKTF-ASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDG 379 (667)
Q Consensus 301 ~~i~~~-a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDG 379 (667)
..++.. +..+++.+.. .++++|+.+|++|++|++||||++ .+|++++++| |||
T Consensus 239 ~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~Gl~V~~WTVn~~------------~~~~~l~~~G---VDg 292 (313)
T 3l12_A 239 QAVASAGGQLWCPYFLD-----------VTPELVAEAHDLGLIVLTWTVNEP------------EDIRRMATTG---VDG 292 (313)
T ss_dssp HHHHHHTCSEEEEBGGG-----------CCHHHHHHHHHTTCEEEEBCCCSH------------HHHHHHHHHT---CSE
T ss_pred HHHHHhCCcEEecchhc-----------CCHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCE
Confidence 111111 4555554322 247899999999999999999753 7899999888 999
Q ss_pred EecCCCCCchhhhhhh
Q 005970 380 VLSDFPLTPSAAVDCF 395 (667)
Q Consensus 380 IiTD~P~~~~~~l~~~ 395 (667)
||||+|+.+++++++.
T Consensus 293 IiTD~P~~~~~~l~~~ 308 (313)
T 3l12_A 293 IVTDYPGRTQRILIDM 308 (313)
T ss_dssp EEESCHHHHHHHHHHT
T ss_pred EEeCCHHHHHHHHHhc
Confidence 9999999999988764
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=361.20 Aligned_cols=239 Identities=14% Similarity=0.047 Sum_probs=185.1
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (667)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 2 mp~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~------------------ 61 (250)
T 3ks6_A 2 MTRIASHRGGTLEFGDSTPHGFTATAAMALE--EVEFDLHPTADGAIVVHHDPTLDATTDMT------------------ 61 (250)
T ss_dssp CCEEEEETTTHHHHCTTCHHHHHHHHTSSSS--EEEEEEEECTTSCEEECSSSBSTTTBSCC------------------
T ss_pred CceEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEEEeEccCCCEEEECCCccccccCCC------------------
Confidence 4899999999999999999999999999999 99999999999999999999999999943
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC--CCceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 171 g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~--~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
+.|.++||+||++|+++.+ . +++||||+|+|++++ +..++||+|.+.... ....+++.++++++++
T Consensus 62 -g~v~~~t~~el~~l~~~~~--------~--~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~-~~~~~~~~v~~~l~~~ 129 (250)
T 3ks6_A 62 -GAIVDMTLAKVKTATIRYG--------A--GSHPMTLEELCALYVDSHVNFRCEIKPGVDGL-PYEGFVALVIAGLERH 129 (250)
T ss_dssp -SBGGGSCHHHHHHCCBTTS--------T--TCCCEEHHHHHHHHTTCSCEEEEEECCCTTSC-CCTTHHHHHHHHHHHT
T ss_pred -CeeecCcHHHHhcCCCCCC--------C--CccCcCHHHHHHHHhccCcEEEEEeCCCcccC-cchHHHHHHHHHHHhc
Confidence 2799999999999999865 2 369999999999995 578999999643111 1236788999999998
Q ss_pred CC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCC
Q 005970 249 VV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLY 325 (667)
Q Consensus 249 ~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~ 325 (667)
++ .+++||++..|+++++.. | +.++.+ +.. .. .... ++..+..++...++. .+.+. +
T Consensus 130 ~~~~~v~~~SF~~~~l~~~~~~~-p-~~~~~l-~~~-~~------~~~~----~~~~~~~~~~~~~~~--~~~~~----~ 189 (250)
T 3ks6_A 130 SMLERTTFSSFLLASMDELWKAT-T-RPRLWL-VSP-SV------LQQL----GPGAVIETAIAHSIH--EIGVH----I 189 (250)
T ss_dssp TCGGGEEEEESCHHHHHHHHHHC-C-SCEEEE-ECH-HH------HHHH----HHHHHHHHHHHTTCC--EEEEE----G
T ss_pred CCCCCEEEEeCCHHHHHHHHHHC-C-CCcEEE-Eec-cc------cccc----chhHHHHHHHhcCCC--EEecc----h
Confidence 76 389999999999999985 3 566543 211 00 0000 112222222212211 11111 0
Q ss_pred CCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhhhh
Q 005970 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFA 396 (667)
Q Consensus 326 l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~~ 396 (667)
...++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+.++++++...
T Consensus 190 ~~~~~~~v~~~~~~G~~V~~WTvn~~------------~~~~~l~~~G---VDgIiTD~P~~~~~~~~~~~ 245 (250)
T 3ks6_A 190 DTADAGLMAQVQAAGLDFGCWAAHTP------------SQITKALDLG---VKVFTTDRPTLAIALRTEHR 245 (250)
T ss_dssp GGCCHHHHHHHHHTTCEEEEECCCSH------------HHHHHHHHHT---CSEEEESCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEcCCHHHHHHHHHHhh
Confidence 12257899999999999999999753 7899999888 99999999999999987664
|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-43 Score=361.12 Aligned_cols=246 Identities=14% Similarity=0.155 Sum_probs=183.9
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCccc----ccccccccccccccccCC
Q 005970 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNA----SNIAQIFKTQQKNYLVNG 166 (667)
Q Consensus 91 ~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rt----t~~~~~~~~~~~~~~~~g 166 (667)
.+.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+ |++.+.. +
T Consensus 8 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~r~~~~tt~g~~~~----------~ 75 (272)
T 3ch0_A 8 SFDIQGHRGCRGLLPENTIAAFTKALLLGVT--TLEFDLVISKDNRVVVSHDTFFHHEITMMVDGEDVT----------E 75 (272)
T ss_dssp TCEEEETTTTTTTSSTTSHHHHHHHHHHTCS--EEEEEEEECTTCCEEECSSSBCCTTTCCEETTEECC----------T
T ss_pred cccEEecCCCCCCCCcccHHHHHHHHHcCCC--EEEEeeeEcCCCcEEEeCCCcccccccccCCCcccc----------c
Confidence 5789999999999999999999999999999 9999999999999999999999994 4432111 1
Q ss_pred CCCCccccccCCHHhhccccccccccCCCCCCCCC---CCccCCHHHHHHhhC----CCceEEeccCchhhhh----cCC
Q 005970 167 VPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGN---GFQILTVQDMARQIK----PPGLWLNIQHDAFYAQ----HNL 235 (667)
Q Consensus 167 ~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~---~~~iptL~e~l~~~~----~~~~~ieiK~~~~~~~----~~~ 235 (667)
....++.|.|+||+||++|+++.|+ ++.|++. ..+||||+|+|++++ +..++||+|.+..... ...
T Consensus 76 ~~~~~~~v~d~t~~eL~~l~~~~~~---~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 152 (272)
T 3ch0_A 76 ANEKNFNLYAMNYADIKEIDVGMKT---HPRFKSQKKVPAVKPLFRELIETAEKLSAKIQYNGEIKSTVEGDNIDHPNIA 152 (272)
T ss_dssp TTGGGSBGGGSCHHHHTTSCCSSSC---CTTCTTSCCCCCCCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBTTTBCCHH
T ss_pred ccccCceeecCCHHHHHhcCCCCcc---CccCcccccCCCCCcCHHHHHHHHHHhCCCceEEEEECCCcCcccccCccHH
Confidence 1122358999999999999999876 3344431 138999999999985 5789999997653211 112
Q ss_pred cHHHHHHHHHhhcCCc---eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecC
Q 005970 236 SMRSFVLSVSRSVVVN---YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILV 312 (667)
Q Consensus 236 ~~~~~l~~~l~~~~~~---~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~ 312 (667)
.+++.++++++++++. +++||++..|+++++.. | +.++.+.. ... ..+..+ ++.+..++.++++
T Consensus 153 ~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~-p-~~~~~~l~-~~~-------~~~~~~---~~~~~~~~~~i~~ 219 (272)
T 3ch0_A 153 LFCDLVVAEIKKAHITDRFTLQSFDVRALEYMHSQY-P-DIKLSYLV-ETK-------GTLKKQ---LEKLSFTPAVYSP 219 (272)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHC-T-TSEEEEEE-CSS-------CCHHHH---HTTSSSCCSEEEE
T ss_pred HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHHC-C-CCcEEEEe-cCC-------CCHHHH---HHHcCCCCcEEcc
Confidence 4678899999998763 89999999999999985 3 57777633 211 011100 0000001134444
Q ss_pred CCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchh
Q 005970 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (667)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~ 390 (667)
.+.. .++.+|+.+|++|++|++||||++ ++|++++++| |||||||+|+.+++
T Consensus 220 ~~~~-----------~~~~~v~~~~~~Gl~v~~wTvn~~------------~~~~~l~~~G---vdgIiTD~P~~~~~ 271 (272)
T 3ch0_A 220 DVTL-----------VSKKDIDAAHKLGMRVIPWTVNTK------------EEIETLISLG---VDGIITDYPDLFFE 271 (272)
T ss_dssp BGGG-----------CCHHHHHHHHHTTCEECCBCCCSH------------HHHHHHHHHT---CSEEEESCGGGGTC
T ss_pred chhh-----------cCHHHHHHHHHcCCEEEEeccCCH------------HHHHHHHHcC---CCEEEeCCHHHHhh
Confidence 3221 247899999999999999999753 7899999888 99999999998754
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=357.43 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=185.8
Q ss_pred CCCEEEEeCCCC--CCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCC---CCccccccccccccccccccc
Q 005970 90 DPPFVVARGGFS--GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDL---KLDNASNIAQIFKTQQKNYLV 164 (667)
Q Consensus 90 ~~~~iiaHRG~~--~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~---~l~rtt~~~~~~~~~~~~~~~ 164 (667)
.+|+||||||++ +.+||||++||+.|++.|+| +||+|||+||||++||+||. +|+||||+.
T Consensus 5 ~~~~iiaHRG~~~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~~~~l~Rtt~~~------------ 70 (258)
T 2o55_A 5 IIPKIVGHRGVGKEGLAPENTLRSFVLCMERNIP--YIETDLRVCKTGEIVLFHGTPEGTIPFYKDGT------------ 70 (258)
T ss_dssp CCCEEEEETTTTTSTTSCTTCHHHHHHHHHTTCC--EEEEEEEECTTSCEEECCCSTTSBCTTSTTTT------------
T ss_pred cCceEEECCCCCCCCCCCccHHHHHHHHHHcCcC--EEEEEEEEecCCeEEEEeCCCCccceeeCCCC------------
Confidence 478999999999 99999999999999999999 99999999999999999999 999999843
Q ss_pred CCCCCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC----CCceEEeccCchhhhhcCCcHHHH
Q 005970 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK----PPGLWLNIQHDAFYAQHNLSMRSF 240 (667)
Q Consensus 165 ~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~----~~~~~ieiK~~~~~~~~~~~~~~~ 240 (667)
+.|.++||+||++|+++. +++||||+|+|++++ +..++||+|.+.... ....+++.
T Consensus 71 -------g~v~~~t~~eL~~l~~~~------------~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~-~~~~~~~~ 130 (258)
T 2o55_A 71 -------SRIGDLSLEELKRLDVGG------------GHTIPSLEELFVAIEEQKFNLKLNLELKGEEWKR-KESGDHQR 130 (258)
T ss_dssp -------CBGGGSCHHHHTTCBSSS------------SCBCCBHHHHHHHHHHSCSCCEEEEEECCSSSSS-TTSSHHHH
T ss_pred -------eehhhCcHHHHhhcCCCC------------CCccCCHHHHHHHhhhhcCceEEEEEEccCCccc-cchHHHHH
Confidence 379999999999999862 369999999999985 578999999653210 12357889
Q ss_pred HHHHHhhcCCc---eEecCCHHHHHHHHhhhCCCCCceEEEec-cCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCc
Q 005970 241 VLSVSRSVVVN---YISSPEVNFLRSIAARFRPSMTKLVFRFL-GKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKD 315 (667)
Q Consensus 241 l~~~l~~~~~~---~i~SFd~~~L~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~ 315 (667)
++++++++++. +++||++..|+++++.. | ..++.+ +. ..... .+..+ +..... .+.++++.+.
T Consensus 131 v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~-p-~~~~~~-l~~~~~~~---~~~~~------~~~~~~~~~~~v~~~~~ 198 (258)
T 2o55_A 131 LLLLVEKYHMQERVDYCSFHHEALAHLKALC-P-DVKITY-LFNYMGQP---TPLDF------VEQACYGDANGVSMLFH 198 (258)
T ss_dssp HHHHHHTTTCGGGEEEEESSHHHHHHHHHHC-T-TCEEEE-ECCTTSCC---CCTTH------HHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHcCCCCCEEEEeCCHHHHHHHHHHC-C-CCcEEE-EEeCCCCC---CHHHH------HHHHHhcCCeEEecChh
Confidence 99999998763 89999999999999985 3 577775 43 21110 11111 111111 2445555432
Q ss_pred cccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhhh
Q 005970 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCF 395 (667)
Q Consensus 316 ~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~ 395 (667)
. .++.+|+.+|++|++|++|||.+. .|+..+|++++++| |||||||+|+.++++++..
T Consensus 199 ~-----------~~~~~v~~~~~~G~~v~~wTv~~~--------~n~~~~~~~l~~~G---vdgI~TD~p~~~~~~l~~~ 256 (258)
T 2o55_A 199 Y-----------LTKEQVCTAHEKGLSVTVWMPWIF--------DDSEEDWKKCLELQ---VDLICSNYPFGLMNFLSNI 256 (258)
T ss_dssp G-----------CCHHHHHHHHHTTCEEEEECCTTC--------CCCHHHHHHHHHHT---CSEEEESCHHHHHHHHTC-
T ss_pred h-----------cCHHHHHHHHHCCCEEEEeeCCCC--------CCCHHHHHHHHHcC---CCEEEeCCHHHHHHHHHHh
Confidence 2 247799999999999999999321 13458899999888 9999999999998887643
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=356.68 Aligned_cols=212 Identities=19% Similarity=0.201 Sum_probs=175.0
Q ss_pred CceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCC
Q 005970 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (667)
Q Consensus 406 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g 485 (667)
-+|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 10 ~~p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~------------------~~g 71 (252)
T 2pz0_A 10 MKTLVIAHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTN------------------GEG 71 (252)
T ss_dssp -CCEEEEETTTTTTSCTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBSTTTSS------------------CCS
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCCcccccCC------------------CCc
Confidence 35899999999999999999999999999999999999999999999999999999999 777
Q ss_pred cccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHH
Q 005970 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (667)
Q Consensus 486 ~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (667)
. |.++||+||++|+++.++ ++.|.+ ++||||+|+|+.+++. . +.++||||.+... ...+++.+
T Consensus 72 ~-v~~~t~~eL~~l~~~~~~---------~~~~~~-~~iPtL~evL~~~~~~-~-~~l~iEiK~~~~~----~~~~~~~v 134 (252)
T 2pz0_A 72 F-VKDFTLEEIKKLDAGIKF---------GEKFAG-ERIPTLYEVFELIGDK-D-FLVNIEIKSGIVL----YPGIEEKL 134 (252)
T ss_dssp B-GGGSCHHHHTTSCSSTTT---------CGGGTT-CCCCBHHHHHHHHTTS-C-CEEEEEECCSSCC----CTTHHHHH
T ss_pred c-hhhCcHHHHhhcCCCCCC---------CCCCCC-CcCCCHHHHHHHhhhc-C-CeEEEEeCCCCcc----cHHHHHHH
Confidence 5 999999999999998653 345664 8999999999999763 2 5899999976432 13688999
Q ss_pred HHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCcc
Q 005970 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQ 644 (667)
Q Consensus 566 ~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~ 644 (667)
+++|+++++. ++++|+|||+++|.+++++ |++++++++.....+. ..++..+++. .+.+... ..+
T Consensus 135 ~~~l~~~~~~----~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~--------~~~~~~~~~~-~i~~~~~-~~~ 200 (252)
T 2pz0_A 135 IKAIKEYNFE----ERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLVEP--------WHMALRMEAY-SLHPFYF-NII 200 (252)
T ss_dssp HHHHHHTTCT----TTEEEEESBHHHHHHHHHHCTTSEEEEEECSBCSST--------HHHHHHTTCS-EEEEBGG-GCC
T ss_pred HHHHHhcCCC----CCEEEEeCCHHHHHHHHHHCCCCCEEEEecCccccH--------HHHHHHcCCe-EEecchh-cCC
Confidence 9999999987 7999999999999999999 9999999987532111 1122333443 2332221 235
Q ss_pred HHHHHHHHHcCCcEEEEeccCC
Q 005970 645 TQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 645 ~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
+++|+.+|++|++|++||||++
T Consensus 201 ~~~v~~~~~~G~~v~~wTvn~~ 222 (252)
T 2pz0_A 201 PELVEGCKKNGVKLFPWTVDRK 222 (252)
T ss_dssp HHHHHHHHHTTCEECCBCCCSH
T ss_pred HHHHHHHHHCCCEEEEECCCCH
Confidence 7999999999999999999974
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=352.90 Aligned_cols=217 Identities=17% Similarity=0.179 Sum_probs=175.6
Q ss_pred cccCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccc
Q 005970 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (667)
Q Consensus 402 ~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~ 481 (667)
...++.|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+||
T Consensus 4 ~~~~~~p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~----------------- 66 (252)
T 3qvq_A 4 SAYSFLPQVIAHRGSSGQAPENTLASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDDYLSRTTD----------------- 66 (252)
T ss_dssp SGGGGCCSEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECCCSBSTTTSS-----------------
T ss_pred ccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCcEEEECCCccccccC-----------------
Confidence 345667999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccH
Q 005970 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSV 561 (667)
Q Consensus 482 ~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 561 (667)
++|. |.++||+||++|+++.++ ++.|.+ ++||||+|+|+.+++.. +.++||||...... ..+
T Consensus 67 -~~~~-v~~~t~~el~~l~~~~~~---------~~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~~~~----~~~ 128 (252)
T 3qvq_A 67 -GDGL-IYKTPLAELKQLDAGSWK---------GQEYQQ-ETIPTLLEAIEVISQYG--MGLNLELKPCEGLE----EET 128 (252)
T ss_dssp -CCSB-GGGSCHHHHTTSCSSTTT---------CGGGTT-CCCCBHHHHHHHHHHTT--CEEEEEECCCTTCH----HHH
T ss_pred -CCce-eecCcHHHHhcCCCCCcc---------CccCCC-CcCcCHHHHHHHHhccC--cEEEEEecCCCCcc----HHH
Confidence 6775 999999999999998654 345665 89999999999998642 48999999643211 257
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCC
Q 005970 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRG 640 (667)
Q Consensus 562 ~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~ 640 (667)
++.+.+++++++... ++++++|||+++|.+++++ |++++++++.....+ ...++..+++. .+.+..
T Consensus 129 ~~~v~~~l~~~~~~~---~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~--------~~~~~~~~~~~-~i~~~~- 195 (252)
T 3qvq_A 129 IAASVEVLKQHWPQD---LPLLFSSFNYFALVSAKALWPEIARGYNVSAIPSA--------WQERLEHLDCA-GLHIHQ- 195 (252)
T ss_dssp HHHHHHHHHHHSCTT---SCEEEEESCHHHHHHHHHHCTTSCEEEECSSCCTT--------HHHHHHHHTCS-EEEEEG-
T ss_pred HHHHHHHHHHhCccc---CCEEEEeCCHHHHHHHHHHCCCCcEEEEEecCchh--------HHHHHHHcCCe-EEecch-
Confidence 788899999987531 5899999999999999999 999999998642111 11223334443 222211
Q ss_pred CCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 641 TSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 641 ~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
...++++|+.+|++|++|++||||++
T Consensus 196 ~~~~~~~v~~~~~~G~~v~~WTvn~~ 221 (252)
T 3qvq_A 196 SFFDVQQVSDIKAAGYKVLAFTINDE 221 (252)
T ss_dssp GGCCHHHHHHHHHTTCEEEEECCCCH
T ss_pred hhCCHHHHHHHHHCCCEEEEEcCCCH
Confidence 13457999999999999999999974
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=361.70 Aligned_cols=223 Identities=21% Similarity=0.197 Sum_probs=176.5
Q ss_pred cCCceeEEEecCCCCCCCchhHHHHHHH-HHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccccccccc
Q 005970 404 KSANLLVISKNGASGDYPSCTNLAYQKA-ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (667)
Q Consensus 404 ~~~~~~iiaHRG~~~~~PENTl~Af~~A-~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~ 482 (667)
...++.||||||+++.+||||++||++| ++.|||+||+|||+||||++||+||.+|+|+||
T Consensus 20 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~------------------ 81 (287)
T 2oog_A 20 TNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTN------------------ 81 (287)
T ss_dssp TSCSSEEEETTTTTTTSCSSSHHHHHHHHHTSCCSEEEEEEEECTTCCEEECSSSBSTTTSS------------------
T ss_pred CCCcceEEecCCCCCCCCchhHHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCChhcccCC------------------
Confidence 3567899999999999999999999999 699999999999999999999999999999999
Q ss_pred CCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHH
Q 005970 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVT 562 (667)
Q Consensus 483 ~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 562 (667)
++|. |.++||+||++|+++.++... ......+.|.+ ++||||+|+|+.++.. ++++||||.+... ..++
T Consensus 82 ~~g~-v~d~T~~eL~~l~~~~~f~~~-~p~~~~~~~~~-~~iPtL~evL~~~~~~---~~l~IEiK~~~~~-----~~~~ 150 (287)
T 2oog_A 82 GHGK-VEDYTLDELKQLDAGSWFNKK-YPKYARASYKN-AKVPTLDEILERYGPN---ANYYIETKSPDVY-----PGME 150 (287)
T ss_dssp CCSB-GGGSCHHHHTTSCSSHHHHHH-CGGGCCGGGTT-CCCCBHHHHHHHHCTT---SCEEEECCCTTTS-----TTHH
T ss_pred CCee-hhhCcHHHHHhcCCCcccCcc-CccccccccCC-ccCCCHHHHHHhhCcC---ceEEEEECCCCCc-----chHH
Confidence 7775 999999999999998643100 00011223454 8999999999999654 5799999976432 2578
Q ss_pred HHHHHHHHhcCC-------CCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccch-hhhhHHHHHHHHHhhhhcCCCe
Q 005970 563 NSVMEALGNAGY-------NKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI-RDALNQTIEDIKKFADSVVLTM 633 (667)
Q Consensus 563 ~~v~~~l~~~~~-------~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~-~~~~~~~l~~~~~~a~~i~~~~ 633 (667)
++|+++|+++++ . ++++|+|||+++|.+++++ |++++++|+.... .......++.+..++.++++.
T Consensus 151 ~~v~~~l~~~~~~~~~~~~~----~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~- 225 (287)
T 2oog_A 151 EQLLASLKKHHLLNNNKLKN----GHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPD- 225 (287)
T ss_dssp HHHHHHHHHTTCSSHHHHHT----TSEEEEESCHHHHHHHHHHCTTSCEEEEECTTTGGGCCHHHHHHHHTTCSEEEEB-
T ss_pred HHHHHHHHHcCCcccccCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEecCCcccccCHHHHHHHhhhheEEccc-
Confidence 999999999988 5 7999999999999999999 9999999986421 112223334444444333332
Q ss_pred eEEeCCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 634 SLYLKRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 634 ~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
. ...++++|+.+|++|++|++||||++
T Consensus 226 -----~-~~~~~~~v~~~~~~G~~v~~wTvn~~ 252 (287)
T 2oog_A 226 -----Y-TDLTEQNTHHLKDLGFIVHPYTVNEK 252 (287)
T ss_dssp -----G-GGCCHHHHHHHHHTTCEECCBCCCSH
T ss_pred -----H-hhcCHHHHHHHHHCCCeEEEEeCCCH
Confidence 1 12346899999999999999999984
|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=359.68 Aligned_cols=229 Identities=15% Similarity=0.062 Sum_probs=183.5
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.
T Consensus 2 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~Rtt~~~------------------- 60 (248)
T 1zcc_A 2 TKIVSHRGANRFAPENTFAAADLALQQGAD--YIELDVRESADGVLYVIHDETLDRTTNGT------------------- 60 (248)
T ss_dssp CEEEETTTTTTTSCSSSHHHHHHHHHTTCS--EEEEEEEECTTCCEEECSSSBTTTTSSCC-------------------
T ss_pred CeEEECCCCCCCCCchHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCccccccCCC-------------------
Confidence 689999999999999999999999999999 99999999999999999999999999943
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC--CceEEeccCchhhhhcCCcHHHHHHHHHhhcC
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~--~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~ 249 (667)
+.|.++||+||++|+++.+ ++||||+|+|+++++ ..++||+|.+... .. .+++.+++++++++
T Consensus 61 g~v~~~t~~eL~~l~~g~~------------~~iptL~evl~~~~~~~~~l~iEiK~~~~~-~~--~~~~~v~~~l~~~~ 125 (248)
T 1zcc_A 61 GPVGHMLSSEIDTLDAGGW------------FDDRFKGAIVPRLDAYLEHLRGRAGVYIEL-KY--CDPAKVAALVRHLG 125 (248)
T ss_dssp SBSTTSCHHHHTTSCSSTT------------TCGGGTTCCCCBHHHHHHHHTTTCEEEEEE-EE--SCHHHHHHHHHHHT
T ss_pred cchhhCCHHHHHhCCCCCC------------CCCCCHHHHHHHHHhcCcEEEEEeCCCCCc-cc--HHHHHHHHHHHHhC
Confidence 2799999999999998753 499999999999864 6789999965321 11 15778999999887
Q ss_pred C---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCccccccCCCCC
Q 005970 250 V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLY 325 (667)
Q Consensus 250 ~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~~~~~~ 325 (667)
+ ++++||++..|+++++.. | +.++.+ +.... . . . ...... .+.++.+.+..+
T Consensus 126 ~~~~v~i~Sf~~~~l~~~~~~~-p-~~~~~~-l~~~~--~---~--~------~~~~~~~~~~~i~~~~~~~-------- 181 (248)
T 1zcc_A 126 MVRDTFYFSFSEEMRQGLQSIA-P-EFRRMM-TLDIA--K---S--P------SLVGAVHHASIIEITPAQM-------- 181 (248)
T ss_dssp CSTTEEEECSCHHHHHHHHHHC-T-TSEEEE-EHHHH--S---S--T------HHHHHTTCCSEEEECHHHH--------
T ss_pred CCCCEEEEECCHHHHHHHHHHC-C-CCcEEE-EecCC--c---c--H------HHHHHHcCCCEEEecHHHh--------
Confidence 5 389999999999999985 3 577765 32211 0 0 0 111121 245555544332
Q ss_pred CCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHH-HHhCCCcccceEecCCCCCchhhhhhhhh
Q 005970 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS-FIDNGDFSVDGVLSDFPLTPSAAVDCFAH 397 (667)
Q Consensus 326 l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~-li~~G~~gVDGIiTD~P~~~~~~l~~~~~ 397 (667)
.++.+|+.+|++|++|++||||++ .++++ ++++| |||||||+|+.++++++....
T Consensus 182 --~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~~l~~~G---vdgIiTD~p~~~~~~~~~~~~ 237 (248)
T 1zcc_A 182 --RRPGIIEASRKAGLEIMVYYGGDD------------MAVHREIATSD---VDYINLDRPDLFAAVRSGMAE 237 (248)
T ss_dssp --HSHHHHHHHHHHTCEEEEECCCCC------------HHHHHHHHHSS---CSEEEESCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHHHcC---CCEEEECCHHHHHHHHHHhcc
Confidence 136799999999999999999865 78899 99888 999999999999998876543
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=355.51 Aligned_cols=245 Identities=19% Similarity=0.178 Sum_probs=187.9
Q ss_pred cccccCCCCCEEEEeCCCCC-CCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccc
Q 005970 83 RWQTLTGDPPFVVARGGFSG-IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKN 161 (667)
Q Consensus 83 ~~~~~~~~~~~iiaHRG~~~-~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~ 161 (667)
.|...+..+|+||||||+++ .+||||++||+.|++.|+| +||+|||+||||++||+||.+++|||++.
T Consensus 23 ~~~~~~~~~~~iiaHRG~~~~~~pENTl~af~~A~~~g~d--~iE~Dv~~TkDg~~Vv~HD~~l~rtt~~~--------- 91 (292)
T 3mz2_A 23 FYQYADDRIPLISGHRGGRGKGYPENSMETFENTLSYTPA--TFEIDPRLTKDSVIVLFHDDTLERTSNGT--------- 91 (292)
T ss_dssp HTBCCTTCCCEEEEGGGCCBTTBCTTCHHHHHHHHHHCCC--EEEECEEECTTCCEEECCSSSSTTTBSCC---------
T ss_pred HHhCCCCCCCEEEECCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeECCCCcEEEECCchhcccCCCC---------
Confidence 34445667899999999985 7999999999999999999 99999999999999999999999999943
Q ss_pred cccCCCCCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHH
Q 005970 162 YLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSF 240 (667)
Q Consensus 162 ~~~~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~ 240 (667)
+.|.++||+||++|+++.+. ..|.+ ++||||+|+|+++++ ..++||+|... .+.
T Consensus 92 ----------g~v~~~t~~el~~l~~~~~~----~~~~~--~~iptL~evl~~~~~~~~l~iE~K~~~---------~~~ 146 (292)
T 3mz2_A 92 ----------GKVSDYTWEELQNFRLKDPE----GNITN--YRIPTLEEAIRWARGKTILILDKKDVP---------MER 146 (292)
T ss_dssp ----------SCGGGSCHHHHTTSCBBCTT----CCBCS--CCCCBHHHHHHHHTTTCCEEECCSSSC---------HHH
T ss_pred ----------CchhhCcHHHHhcCCCCCCC----CccCC--cCCCCHHHHHHHhCCCcEEEEEECCCc---------HHH
Confidence 27999999999999998653 23444 699999999999864 67999999642 257
Q ss_pred HHHHHhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhh-------ccee
Q 005970 241 VLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-------ASGI 310 (667)
Q Consensus 241 l~~~l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~-------a~~i 310 (667)
++++++++++ ++++||++..|+++++.. | +.++.+ +.. . +. .+..+... +..+
T Consensus 147 v~~~l~~~~~~~~vii~Sf~~~~l~~~~~~~-p-~~~~~~-l~~-~------~~-------~l~~~~~~g~~~~~~~~~~ 209 (292)
T 3mz2_A 147 TAQLITDMQAEPYVMITVHDGASARFFYEKN-P-NFMFEA-FVK-T------KE-------AVQDYEDNGIPWSHIMAYV 209 (292)
T ss_dssp HHHHHHHTTCTTTEEEEESSHHHHHHHHHHC-T-TCCEEE-ECC-S------HH-------HHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHcCCCCCEEEEECCHHHHHHHHHHC-C-CCeEEE-EeC-C------HH-------HHHHHHHhCCChhheeeee
Confidence 8888998876 499999999999999985 3 577775 321 1 00 12222111 1112
Q ss_pred cCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchh
Q 005970 311 LVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (667)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~ 390 (667)
++.+ ...++++|+.+|++|++|++||+|+..... ...|+.++|++++++| |||||||+|+.+.+
T Consensus 210 ~~~~-----------~~~~~~~V~~ah~~G~~V~vWTv~t~d~~~--~~~~~~~~~~~L~~~G---VDgIiTD~P~~l~~ 273 (292)
T 3mz2_A 210 GPKI-----------TPEVREVIDMLHERGVMCMISTAPSDDKLS--TPESRAEAYRMIIRQG---VDIIESDRPIEVAE 273 (292)
T ss_dssp ESSC-----------CHHHHHHHHHHHHTTBCEEEECTTTGGGSS--SHHHHHHHHHHHHHTT---CCEEEESCHHHHHH
T ss_pred cccc-----------cccCHHHHHHHHHCCCEEEEEeCCCcchhh--hccccHHHHHHHHHcC---CCEEEeCCHHHHHH
Confidence 2211 112467999999999999999998631000 0012357899999988 99999999999999
Q ss_pred hhhhhh
Q 005970 391 AVDCFA 396 (667)
Q Consensus 391 ~l~~~~ 396 (667)
+++...
T Consensus 274 ~L~~~~ 279 (292)
T 3mz2_A 274 AISSLI 279 (292)
T ss_dssp HHGGGS
T ss_pred HHHHhc
Confidence 998764
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=359.59 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=181.5
Q ss_pred hhcCcCcccCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccc
Q 005970 396 AHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITT 475 (667)
Q Consensus 396 ~~~~~~~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~ 475 (667)
.++........++.||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+|+.+..
T Consensus 6 ~~~~~~~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~rtt~~~~~------- 78 (313)
T 3l12_A 6 SQLEGLRGHPSVVRVIGHRGARGVMPENTLEGFAFTLAAGVRALEFDVVMTADGVPVVTHNHHLANAMTRDGQ------- 78 (313)
T ss_dssp GGGGGTCCBTTBCEEEEETTTTTTSCTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECSSSBCCTTTCBCTT-------
T ss_pred ccccccccCCCCeEEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEECCchhcccccccCC-------
Confidence 3444445566779999999999999999999999999999999999999999999999999999999753210
Q ss_pred cccccccCCCcccccCCHHHHcccCCCccCCccccc--ccCCCCCCCCccccCHHHHHHHHHhcC-CcceEEEEeecchh
Q 005970 476 TIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFK--LFRNPKNKNAGKFMKLSDFLEMAKNAN-SLSGVLISIENAVY 552 (667)
Q Consensus 476 ~~~~~~~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~--~~~~~~~~~~~~iPtL~EvL~~~~~~~-~~~~l~iEiK~~~~ 552 (667)
..+..+.+..|.++||+||++|+++.+.+..|++ .+....+.| ++||||+|+|+.+++.+ ..++++||||.+..
T Consensus 79 --G~~~~~~~~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~g-~~iptL~evl~~~~~~~~~~~~l~IEiK~~~~ 155 (313)
T 3l12_A 79 --GHWLTGAERQVAEMTYAEIRALDVGGLDGRTVYGRRFPDQAFLTG-IHVPRLGELLDLCAGYGDQAPYLLLELKSDPA 155 (313)
T ss_dssp --SCBCCSSCCBGGGSCHHHHHTSBCSSCCTTSHHHHHSTTSCCCSS-CCCCBHHHHHHHHHTTGGGCCEEEEEECCCGG
T ss_pred --CcccCCCCcchhcCcHHHHhhCCCCCccccccccccCccccccCC-CcCCCHHHHHHHHHhcCCCCceEEEEEccCCc
Confidence 0000111235999999999999998632211111 111122343 89999999999998731 02589999997654
Q ss_pred hhh--hhcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchh--h---hhHH--HH---
Q 005970 553 LAE--KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR--D---ALNQ--TI--- 619 (667)
Q Consensus 553 ~~~--~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~--~---~~~~--~l--- 619 (667)
... .....++++|+++|+++++. ++++|+|||+++|.+++++ |++++++|+..... + .... .+
T Consensus 156 ~~~~~~~~~~~~~~v~~~l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 231 (313)
T 3l12_A 156 LMHDHAARAEMVAAVLADVRRYRME----PRTVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDYD 231 (313)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCTTSCEEEEECCCC-------------CCCTT
T ss_pred cccccccHHHHHHHHHHHHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEeccccccccccccccccccccch
Confidence 210 01136899999999999987 7999999999999999999 99999999875321 0 0000 00
Q ss_pred ---HHHHHhhhhcCCCeeEEeCCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 620 ---EDIKKFADSVVLTMSLYLKRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 620 ---~~~~~~a~~i~~~~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
..+..++..+++. .+.+.. ...++++|+.+|++|++|++||||++
T Consensus 232 ~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~v~~~~~~Gl~V~~WTVn~~ 279 (313)
T 3l12_A 232 RMTESLPQAVASAGGQ-LWCPYF-LDVTPELVAEAHDLGLIVLTWTVNEP 279 (313)
T ss_dssp TCCSCHHHHHHHHTCS-EEEEBG-GGCCHHHHHHHHHTTCEEEEBCCCSH
T ss_pred hccccHHHHHHHhCCc-EEecch-hcCCHHHHHHHHHCCCEEEEEcCCCH
Confidence 0011222233433 233221 13457999999999999999999984
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=347.24 Aligned_cols=213 Identities=16% Similarity=0.091 Sum_probs=171.1
Q ss_pred CceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCC
Q 005970 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (667)
Q Consensus 406 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g 485 (667)
+.|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 5 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~R~t~------------------~~g 66 (247)
T 2otd_A 5 PYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSN------------------GWG 66 (247)
T ss_dssp CCCSEEETTTTTTSSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBSSTTSS------------------CCS
T ss_pred CCCeEEECCCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCccccCC------------------CCc
Confidence 45789999999999999999999999999999999999999999999999999999999 777
Q ss_pred cccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHH
Q 005970 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (667)
Q Consensus 486 ~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (667)
. |.++||+||++|+++.++ ++.|.+ ++||||+|+|+.+++.. +.++||||.+.... ..+++.+
T Consensus 67 ~-v~~~t~~eL~~l~~g~~~---------~~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~~~~----~~~~~~v 129 (247)
T 2otd_A 67 V-AGELNWQDLLRVDAGSWY---------SKAFKG-EPLPLLSQVAERCREHG--MMANIEIKPTTGTG----PLTGKMV 129 (247)
T ss_dssp B-GGGSCHHHHTTCCSSTTT---------CGGGTT-CCCCBHHHHHHHHHHTT--CEEEEEECCCTTCH----HHHHHHH
T ss_pred c-HhhCcHHHHhhCCCCCcc---------CCCCCC-CcCCCHHHHHHHHHhcC--CEEEEEECCCCCcc----hHHHHHH
Confidence 5 999999999999998653 345665 89999999999998542 48999999765421 2467889
Q ss_pred HHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCcc
Q 005970 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQ 644 (667)
Q Consensus 566 ~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~ 644 (667)
+++|+++... . ++++|+||+++.|..++++ |++++++++.....+. ..++..+++. .+.+... ..+
T Consensus 130 ~~~l~~~~~~-~--~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~--------~~~~~~~~~~-~i~~~~~-~~~ 196 (247)
T 2otd_A 130 ALAARQLWAG-M--TPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDW--------RELTARLGCV-SIHLNHK-LLD 196 (247)
T ss_dssp HHHHHHHTTT-S--CCCEEEESCHHHHHHHHHHCTTSCEEEEESSCCTTH--------HHHHHHHTCS-EEEEEGG-GCC
T ss_pred HHHHHHHhcC-c--CCEEEEcCCHHHHHHHHHHCCCCCEEEEecCCcccH--------HHHHHHcCCe-EEecChH-hCC
Confidence 9999887211 1 3899999999999999999 9999999987422111 1122333443 2222111 235
Q ss_pred HHHHHHHHHcCCcEEEEeccCC
Q 005970 645 TQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 645 ~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
+++|+.+|++|++|++||||++
T Consensus 197 ~~~v~~~~~~G~~v~~wTvn~~ 218 (247)
T 2otd_A 197 KARVMQLKDAGLRILVYTVNKP 218 (247)
T ss_dssp HHHHHHHHHTTCEEEEECCCCH
T ss_pred HHHHHHHHHCCCEEEEEccCCH
Confidence 7999999999999999999974
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=349.04 Aligned_cols=213 Identities=10% Similarity=0.034 Sum_probs=174.5
Q ss_pred ceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCc
Q 005970 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (667)
Q Consensus 407 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~ 486 (667)
.|+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+ ++|.
T Consensus 2 mp~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------~~g~ 63 (250)
T 3ks6_A 2 MTRIASHRGGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVVHHDPTLDATTD------------------MTGA 63 (250)
T ss_dssp CCEEEEETTTHHHHCTTCHHHHHHHHTSSSSEEEEEEEECTTSCEEECSSSBSTTTBS------------------CCSB
T ss_pred CceEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEEeEccCCCEEEECCCccccccC------------------CCCe
Confidence 3789999999999999999999999999999999999999999999999999999999 6775
Q ss_pred ccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHH
Q 005970 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (667)
Q Consensus 487 ~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (667)
|.++||+||++|+++.+ . +++||||+|+|+.+++.+ +.++||||.+.... ....++++++
T Consensus 64 -v~~~t~~el~~l~~~~~--------------~-~~~iptL~evl~~~~~~~--~~l~iEiK~~~~~~--~~~~~~~~v~ 123 (250)
T 3ks6_A 64 -IVDMTLAKVKTATIRYG--------------A-GSHPMTLEELCALYVDSH--VNFRCEIKPGVDGL--PYEGFVALVI 123 (250)
T ss_dssp -GGGSCHHHHHHCCBTTS--------------T-TCCCEEHHHHHHHHTTCS--CEEEEEECCCTTSC--CCTTHHHHHH
T ss_pred -eecCcHHHHhcCCCCCC--------------C-CccCcCHHHHHHHHhccC--cEEEEEeCCCcccC--cchHHHHHHH
Confidence 99999999999999853 1 389999999999997532 58999999753210 1236899999
Q ss_pred HHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccH
Q 005970 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQT 645 (667)
Q Consensus 567 ~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~ 645 (667)
++|+++++. ++++++|||++.|.+++++ |+++++++..... ....+..+..++..+++. .+.+.. ...++
T Consensus 124 ~~l~~~~~~----~~v~~~SF~~~~l~~~~~~~p~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~ 194 (250)
T 3ks6_A 124 AGLERHSML----ERTTFSSFLLASMDELWKATTRPRLWLVSPSVL---QQLGPGAVIETAIAHSIH-EIGVHI-DTADA 194 (250)
T ss_dssp HHHHHTTCG----GGEEEEESCHHHHHHHHHHCCSCEEEEECHHHH---HHHHHHHHHHHHHHTTCC-EEEEEG-GGCCH
T ss_pred HHHHhcCCC----CCEEEEeCCHHHHHHHHHHCCCCcEEEEecccc---cccchhHHHHHHHhcCCC-EEecch-hhCCH
Confidence 999999987 7999999999999999999 9999987764211 111233344556666664 233221 23467
Q ss_pred HHHHHHHHcCCcEEEEeccCC
Q 005970 646 QLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 646 ~~v~~ah~~Gl~V~vWTVn~e 666 (667)
++|+.+|++|++|++||||++
T Consensus 195 ~~v~~~~~~G~~V~~WTvn~~ 215 (250)
T 3ks6_A 195 GLMAQVQAAGLDFGCWAAHTP 215 (250)
T ss_dssp HHHHHHHHTTCEEEEECCCSH
T ss_pred HHHHHHHHCCCEEEEEeCCCH
Confidence 999999999999999999984
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=347.70 Aligned_cols=225 Identities=16% Similarity=0.159 Sum_probs=178.5
Q ss_pred CCCEEEEeCCC--CCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCC
Q 005970 90 DPPFVVARGGF--SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (667)
Q Consensus 90 ~~~~iiaHRG~--~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (667)
.+|.||||||+ ++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++| .
T Consensus 3 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~~--~----------------- 61 (238)
T 3no3_A 3 DNTKVIAHRGYWKTEGSAQNSIRSLERASEIGAY--GSEFDVHLTADNVLVVYHDNDIQG--K----------------- 61 (238)
T ss_dssp CCCEEEETTSSCSSTTCCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSEETT--E-----------------
T ss_pred CCCeEEeCCCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCCCCC--C-----------------
Confidence 46899999999 689999999999999999999 999999999999999999999986 1
Q ss_pred CCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC---CCceEEeccCchhhhhcCCcHHHHHHHH
Q 005970 168 PTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK---PPGLWLNIQHDAFYAQHNLSMRSFVLSV 244 (667)
Q Consensus 168 ~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~---~~~~~ieiK~~~~~~~~~~~~~~~l~~~ 244 (667)
.|.++||+||++|+++. +++||||+|+|++++ +..++||+|.+.... ....+++.++++
T Consensus 62 -----~v~~~t~~el~~l~~~~------------~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~-~~~~~~~~v~~~ 123 (238)
T 3no3_A 62 -----HIQSCTYDELKDLQLSN------------GEKLPTLEQYLKRAKKLKNIRLIFELKSHDTPE-RNRDAARLSVQM 123 (238)
T ss_dssp -----EGGGSCHHHHTTCBCTT------------SCBCCBHHHHHHHHHHCTTCEEEEEECCCSSHH-HHHHHHHHHHHH
T ss_pred -----ChHhCCHHHHhhCCCCC------------CCcCCcHHHHHHHHhhcCCceEEEEeCCCCCcc-hhHHHHHHHHHH
Confidence 68999999999999763 369999999999985 368999999654221 112477889999
Q ss_pred HhhcCC---ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCcccccc
Q 005970 245 SRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPV 320 (667)
Q Consensus 245 l~~~~~---~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~ 320 (667)
++++++ ++++||++..|.++++.. | +.++.+ +.... . ...++. .+.++.+.+..+
T Consensus 124 l~~~~~~~~v~~~Sf~~~~l~~~~~~~-p-~~~~~~-l~~~~--~-------------~~~~~~~~~~~~~~~~~~~--- 182 (238)
T 3no3_A 124 VKRMKLAKRTDYISFNMDACKEFIRLC-P-KSEVSY-LNGEL--S-------------PMELKELGFTGLDYHYKVL--- 182 (238)
T ss_dssp HHHTTCGGGEEEEESCHHHHHHHHHHC-T-TSCEEE-CSSCS--C-------------HHHHHHTTCCEEEEEHHHH---
T ss_pred HHHcCCcCCEEEEECCHHHHHHHHHHC-C-CCeEEE-EeCCC--C-------------HHHHHHCCCceEeccHHhh---
Confidence 999876 389999999999999986 3 577775 32211 0 111221 133343322211
Q ss_pred CCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhhh
Q 005970 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCF 395 (667)
Q Consensus 321 ~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~ 395 (667)
..++++|+.+|++|++|++||||++ .+|++++++| |||||||+|+.+++++++.
T Consensus 183 ------~~~~~~v~~~~~~G~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD~P~~~~~~l~~r 236 (238)
T 3no3_A 183 ------QSHPDWVKDCKVLGMTSNVWTVDDP------------KLMEEMIDMG---VDFITTDLPEETQKILHSR 236 (238)
T ss_dssp ------HHSTTHHHHHHHTTCEEEEECCCSH------------HHHHHHHHHT---CSEEEESCHHHHHHHHHHH
T ss_pred ------hCCHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHHcC---CCEEECCCHHHHHHHHHhc
Confidence 1135699999999999999999753 7899999888 9999999999999988765
|
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=366.02 Aligned_cols=253 Identities=20% Similarity=0.223 Sum_probs=186.9
Q ss_pred CCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCC
Q 005970 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (667)
Q Consensus 405 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~ 484 (667)
+.++.||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+||+.. .|++|.+. .++
T Consensus 28 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~-~f~~~~~~-----~g~ 101 (356)
T 1ydy_A 28 SNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD-RFPDRARK-----DGR 101 (356)
T ss_dssp -CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBCTTTBSHHH-HSTTCCCT-----TSC
T ss_pred CCCceEEEeCCCCCCCCcchHHHHHHHHHcCCCEEEeeeEECCCCcEEEeCCChHHhhcCccc-cccccccc-----CCC
Confidence 567899999999999999999999999999999999999999999999999999999998543 36655431 245
Q ss_pred CcccccCCHHHHcccCCCccCCcc-cc----cccCCCCCCCCccccCHHHHHHHHHhc----CCcceEEEEeecchhhhh
Q 005970 485 GIFSFSLIWDEIQTLIPQISNPYF-KF----KLFRNPKNKNAGKFMKLSDFLEMAKNA----NSLSGVLISIENAVYLAE 555 (667)
Q Consensus 485 g~~i~d~t~~EL~~L~~~~~~p~~-~~----~~~~~~~~~~~~~iPtL~EvL~~~~~~----~~~~~l~iEiK~~~~~~~ 555 (667)
|. |.++||+||++|+++.++.-. +. ...+.+.+.++++||||+|+|+++++. +..++++||||.+....
T Consensus 102 ~~-v~d~T~~eL~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~- 179 (356)
T 1ydy_A 102 YY-AIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHH- 179 (356)
T ss_dssp CB-GGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHHH-
T ss_pred cc-hhhCcHHHHHhCCCCccccccccccccccccccccccCCCcCCCHHHHHHHHHHhhhcccCCceEEEeecCccccc-
Confidence 54 999999999999998653100 00 000111112358999999999999862 11258999999876432
Q ss_pred hhcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc------cCCcEEEEeccch------------------
Q 005970 556 KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK------TSYELVYKVKENI------------------ 611 (667)
Q Consensus 556 ~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~------p~~~~~~L~~~~~------------------ 611 (667)
..+..++++|+++|+++++... .++++|+|||+++|+++|++ |++++++|+....
T Consensus 180 ~~~~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~l~~~~~~~~p~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 258 (356)
T 1ydy_A 180 QEGKDIAAKTLEVLKKYGYTGK-DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNY 258 (356)
T ss_dssp HTTCCHHHHHHHHHHHTTCCST-TSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECCC
T ss_pred ccchhHHHHHHHHHHHcCCCCC-CCCEEEEcCCHHHHHHHHhhcccccCCCceEEEEeccCcccccccccccccccccch
Confidence 1335689999999999998421 16899999999999999996 7899999986321
Q ss_pred hh-hhHHHHHHHHHhhhhcCCC-eeEEeCC---CCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 612 RD-ALNQTIEDIKKFADSVVLT-MSLYLKR---GTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 612 ~~-~~~~~l~~~~~~a~~i~~~-~~i~~~~---~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
.. ..+..+.++..+++.++++ ..+.+.. ....++++|+.+|++|++|++||||++
T Consensus 259 ~~~~~~~~l~~~~~~a~~i~p~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~ 318 (356)
T 1ydy_A 259 DWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSD 318 (356)
T ss_dssp GGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTT
T ss_pred hhhcchhhHHHHHhhCeEEccCHHHhccccccccccCCHHHHHHHHHCCCEEEEEEECcc
Confidence 00 1123455556667666665 2222100 011336899999999999999999974
|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=347.36 Aligned_cols=228 Identities=15% Similarity=0.136 Sum_probs=173.5
Q ss_pred CceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccccc----ccCCCCccCCccccccccc
Q 005970 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS----TNAAQSKFNSITTTIPEIM 481 (667)
Q Consensus 406 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~----t~v~~~~~~~~~~~~~~~~ 481 (667)
.++.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+ |+-. ... +.
T Consensus 7 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~~~~tt~g~---------~~~-~~ 76 (272)
T 3ch0_A 7 ASFDIQGHRGCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFFHHEITMMVDGE---------DVT-EA 76 (272)
T ss_dssp TTCEEEETTTTTTTSSTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBCCTTTCCEETTE---------ECC-TT
T ss_pred ccccEEecCCCCCCCCcccHHHHHHHHHcCCCEEEEeeeEcCCCcEEEeCCCcccccccccCCCc---------ccc-cc
Confidence 457899999999999999999999999999999999999999999999999999994 3300 000 00
Q ss_pred cCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCC----CccccCHHHHHHHHHhcCCcceEEEEeecchhhhh--
Q 005970 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN----AGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE-- 555 (667)
Q Consensus 482 ~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~----~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~-- 555 (667)
.+.+..|.++||+||++|+++.++ ++.|.+ ..+||||+|+|+++++.+..+.++||||.+.....
T Consensus 77 ~~~~~~v~d~t~~eL~~l~~~~~~---------~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~ 147 (272)
T 3ch0_A 77 NEKNFNLYAMNYADIKEIDVGMKT---------HPRFKSQKKVPAVKPLFRELIETAEKLSAKIQYNGEIKSTVEGDNID 147 (272)
T ss_dssp TGGGSBGGGSCHHHHTTSCCSSSC---------CTTCTTSCCCCCCCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBTTT
T ss_pred cccCceeecCCHHHHHhcCCCCcc---------CccCcccccCCCCCcCHHHHHHHHHHhCCCceEEEEECCCcCccccc
Confidence 122335999999999999998754 123332 13899999999999874222589999997653110
Q ss_pred -hhcccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCC-
Q 005970 556 -KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLT- 632 (667)
Q Consensus 556 -~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~- 632 (667)
.....++++++++|+++++. ++++|+|||+++|.+++++ |++++++++... .+ +..++..+++.
T Consensus 148 ~~~~~~~~~~v~~~l~~~~~~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~-~~--------~~~~~~~~~~~~ 214 (272)
T 3ch0_A 148 HPNIALFCDLVVAEIKKAHIT----DRFTLQSFDVRALEYMHSQYPDIKLSYLVETK-GT--------LKKQLEKLSFTP 214 (272)
T ss_dssp BCCHHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCTTSEEEEEECSS-CC--------HHHHHTTSSSCC
T ss_pred CccHHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHHHHHHCCCCcEEEEecCC-CC--------HHHHHHHcCCCC
Confidence 01124789999999999987 7999999999999999999 999999998742 11 11233444542
Q ss_pred eeEEeCCCCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 633 MSLYLKRGTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 633 ~~i~~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
..+.+... ..++++|+.+|++|++|++||||++
T Consensus 215 ~~i~~~~~-~~~~~~v~~~~~~Gl~v~~wTvn~~ 247 (272)
T 3ch0_A 215 AVYSPDVT-LVSKKDIDAAHKLGMRVIPWTVNTK 247 (272)
T ss_dssp SEEEEBGG-GCCHHHHHHHHHTTCEECCBCCCSH
T ss_pred cEEccchh-hcCHHHHHHHHHcCCEEEEeccCCH
Confidence 23433222 2357999999999999999999984
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=334.84 Aligned_cols=215 Identities=14% Similarity=0.053 Sum_probs=170.5
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCC
Q 005970 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (667)
Q Consensus 90 ~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (667)
.+|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++ +
T Consensus 6 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lT~Dg~lVv~HD~~l~---~------------------- 61 (224)
T 1vd6_A 6 QRPLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTP---L------------------- 61 (224)
T ss_dssp -CCEEEEETSCTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSCSEET---T-------------------
T ss_pred CCceEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEecCCcEEEECCCccC---C-------------------
Confidence 46899999999999999999999999999999 99999999999999999999997 2
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC---CCceEEeccCchhhhhcCCcHHHHHHHHHh
Q 005970 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK---PPGLWLNIQHDAFYAQHNLSMRSFVLSVSR 246 (667)
Q Consensus 170 ~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~---~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~ 246 (667)
+.|.++||+||++|+ ++||||+|+|++++ +..++||+|.+.... ..+++.++++++
T Consensus 62 --g~v~~~t~~eL~~l~----------------~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~l~ 120 (224)
T 1vd6_A 62 --GPVFQVDYADLKAQE----------------PDLPRLEEVLALKEAFPQAVFNVELKSFPGLG---EEAARRLAALLR 120 (224)
T ss_dssp --EEGGGSCHHHHHHHS----------------TTCCBHHHHHGGGGTCTTCEEEEEECCCTTSH---HHHHHHHHHHTT
T ss_pred --CChhhCCHHHHHhcC----------------CCCCCHHHHHHhhhccCCceEEEEECCCCCcc---HHHHHHHHHHHh
Confidence 168999999999887 28999999999997 367999999653211 135678888888
Q ss_pred hcCCceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCCC
Q 005970 247 SVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYL 326 (667)
Q Consensus 247 ~~~~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~l 326 (667)
+.+.++++||++..|.++++.. | +.++.+ +..... . .. ++. ..+.++++.+..
T Consensus 121 ~~~~v~i~Sf~~~~l~~~~~~~-p-~~~~~~-l~~~~~------~---~~---~~~--~~~~~i~~~~~~---------- 173 (224)
T 1vd6_A 121 GREGVWVSSFDPLALLALRKAA-P-GLPLGF-LMAEDH------S---AL---LPC--LGVEAVHPHHAL---------- 173 (224)
T ss_dssp TCSSEEEEESCHHHHHHHHHHC-T-TSCEEE-EESSCC------G---GG---GGG--SCCSEEEEBGGG----------
T ss_pred cCCcEEEEeCCHHHHHHHHHHC-C-CCCEEE-Eecccc------H---HH---HHH--cCCcEEecCccc----------
Confidence 8555699999999999999985 3 577775 322110 0 00 000 124445443322
Q ss_pred CCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhh
Q 005970 327 LPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 327 ~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l 392 (667)
.++.+++.+|++|++|++||||+ ..++++++++| ||||+||+|+.+++++
T Consensus 174 -~~~~~v~~~~~~G~~v~~wtvn~------------~~~~~~l~~~G---vdgI~TD~p~~~~~~~ 223 (224)
T 1vd6_A 174 -VTEEAVAGWRKRGLFVVAWTVNE------------EGEARRLLALG---LDGLIGDRPEVLLPLG 223 (224)
T ss_dssp -CCHHHHHHHHHTTCEEEEECCCC------------HHHHHHHHHTT---CSEEEESCHHHHTTSC
T ss_pred -CCHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHhcC---CCEEEcCCHHHHHHhc
Confidence 24779999999999999999975 37899999888 9999999999877654
|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=339.62 Aligned_cols=222 Identities=17% Similarity=0.181 Sum_probs=172.2
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCC
Q 005970 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (667)
Q Consensus 90 ~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (667)
..++||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.
T Consensus 11 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~----------------- 71 (234)
T 1o1z_A 11 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGAN--GVELDVRLSKDGKVVVSHDEDLKRLFGLD----------------- 71 (234)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSEEHHHHCEE-----------------
T ss_pred ceEEEEEcCCCCCCCCCchHHHHHHHHHcCCC--EEEEEeeEecCCCEEEEcCCcHHhcCCcC-----------------
Confidence 46899999999999999999999999999999 99999999999999999999999999953
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 170 ~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
+.|.++||+||++|+ + ++||||+|+|+++++ ..++||+|.+. .++.+++++++.
T Consensus 72 --g~v~d~T~~eL~~l~-------------~--~~iptL~evL~~~~~~~~l~iEiK~~~--------~~~~v~~~l~~~ 126 (234)
T 1o1z_A 72 --VKIRDATVSELKELT-------------D--GKITTLKEVFENVSDDKIINIEIKERE--------AADAVLEISKKR 126 (234)
T ss_dssp --EEGGGSCHHHHHHHT-------------T--TCCCBHHHHHHHSCTTSEEEEEECCGG--------GHHHHHHHHTTC
T ss_pred --cCcccCcHHHHhcCC-------------C--CCCCCHHHHHHhcccCCeEEEEeCCcc--------HHHHHHHHHhcc
Confidence 379999999999988 2 499999999999975 78999999653 356788888874
Q ss_pred CCceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHH-hhcceecCCCccccccCCCCCCC
Q 005970 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYLL 327 (667)
Q Consensus 249 ~~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~-~~a~~i~~~~~~~~~~~~~~~l~ 327 (667)
+.++++||+ |+++++.. | +.++.+ +...... ..+..+ +..+. .+..++.+.+..+. +.
T Consensus 127 ~~vii~Sf~---l~~~~~~~-p-~~~~~~-l~~~~~~-----~~~~~~---~~~~~~~~~~~i~~~~~~~g-------~~ 185 (234)
T 1o1z_A 127 KNLIFSSFD---LDLLDEKF-K-GTKYGY-LIDEENY-----GSIENF---VERVEKERPYSLHVPYQAFE-------LE 185 (234)
T ss_dssp CSEEEEESC---HHHHHHHC-T-TSCEEE-ECCTTTT-----CSHHHH---HHHHHHHCCSEEEEEGGGGG-------SH
T ss_pred CCEEEEchh---HHHHHhhC-C-CCcEEE-Eeccccc-----cCHHHH---HHHcCCCCCCEEEeCHHHhc-------CC
Confidence 456999999 88898885 3 677775 3322110 011111 11221 12255665544330 00
Q ss_pred CChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhh
Q 005970 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l 392 (667)
..+.+++.+|++|++|++||||++ ++|++++ ++ ||||+||+|+.+++++
T Consensus 186 ~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~---~~-vdgIiTD~P~~~~~~~ 234 (234)
T 1o1z_A 186 YAVEVLRSFRKKGIVIFVWTLNDP------------EIYRKIR---RE-IDGVITDEVELFVKLR 234 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEESCCCH------------HHHHHHG---GG-CSEEEESCHHHHHHTC
T ss_pred ccHHHHHHHHHcCCEEEEeCCCCH------------HHHHHHH---Hh-CCEEEcCCHHHHhhcC
Confidence 116799999999999999999753 7888888 56 9999999999877653
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.42 Aligned_cols=212 Identities=10% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCceeEEEecCCC--CCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccC---cccccccCCCCccCCccccccc
Q 005970 405 SANLLVISKNGAS--GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI---NLINSTNAAQSKFNSITTTIPE 479 (667)
Q Consensus 405 ~~~~~iiaHRG~~--~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~---~L~r~t~v~~~~~~~~~~~~~~ 479 (667)
..+|+||||||++ +.+||||++||++|++.|||+||+|||+||||++||+||. +|+|+||
T Consensus 4 ~~~~~iiaHRG~~~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~l~Rtt~--------------- 68 (258)
T 2o55_A 4 VIIPKIVGHRGVGKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKD--------------- 68 (258)
T ss_dssp CCCCEEEEETTTTTSTTSCTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECCCSTTSBCTTSTT---------------
T ss_pred ccCceEEECCCCCCCCCCCccHHHHHHHHHHcCcCEEEEEEEEecCCeEEEEeCCCCccceeeCC---------------
Confidence 4568999999999 9999999999999999999999999999999999999999 9999999
Q ss_pred cccCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcc
Q 005970 480 IMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (667)
Q Consensus 480 ~~~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 559 (667)
++|. |.++||+||++|+++. +++||||+|+|+.+++.+..+.++||||.+.... ...
T Consensus 69 ---~~g~-v~~~t~~eL~~l~~~~-----------------~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~--~~~ 125 (258)
T 2o55_A 69 ---GTSR-IGDLSLEELKRLDVGG-----------------GHTIPSLEELFVAIEEQKFNLKLNLELKGEEWKR--KES 125 (258)
T ss_dssp ---TTCB-GGGSCHHHHTTCBSSS-----------------SCBCCBHHHHHHHHHHSCSCCEEEEEECCSSSSS--TTS
T ss_pred ---CCee-hhhCcHHHHhhcCCCC-----------------CCccCCHHHHHHHhhhhcCceEEEEEEccCCccc--cch
Confidence 7775 9999999999999862 3799999999999987421258999999754210 113
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEe-ccchhhhhHHHHHHHHHhhhhcCCCeeEEe
Q 005970 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKV-KENIRDALNQTIEDIKKFADSVVLTMSLYL 637 (667)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~-~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~ 637 (667)
.+++.++++|+++++. ++++|+||+++.|..++++ |++++++++ .....+.. ..+. .+..+++. .+.+
T Consensus 126 ~~~~~v~~~l~~~~~~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~-~~~~----~~~~~~~~-~v~~ 195 (258)
T 2o55_A 126 GDHQRLLLLVEKYHMQ----ERVDYCSFHHEALAHLKALCPDVKITYLFNYMGQPTPL-DFVE----QACYGDAN-GVSM 195 (258)
T ss_dssp SHHHHHHHHHHTTTCG----GGEEEEESSHHHHHHHHHHCTTCEEEEECCTTSCCCCT-THHH----HHHHTTCS-EEEE
T ss_pred HHHHHHHHHHHHcCCC----CCEEEEeCCHHHHHHHHHHCCCCcEEEEEeCCCCCCHH-HHHH----HHHhcCCe-EEec
Confidence 6889999999999987 7999999999999999999 999999998 43211100 1111 12233443 2222
Q ss_pred CCCCCccHHHHHHHHHcCCcEEEEec----cC
Q 005970 638 KRGTSSQTQLWRSTHITRELVLMELL----QN 665 (667)
Q Consensus 638 ~~~~~~~~~~v~~ah~~Gl~V~vWTV----n~ 665 (667)
... ..++++|+.+|++|++|++||| |+
T Consensus 196 ~~~-~~~~~~v~~~~~~G~~v~~wTv~~~~n~ 226 (258)
T 2o55_A 196 LFH-YLTKEQVCTAHEKGLSVTVWMPWIFDDS 226 (258)
T ss_dssp EGG-GCCHHHHHHHHHTTCEEEEECCTTCCCC
T ss_pred Chh-hcCHHHHHHHHHCCCEEEEeeCCCCCCC
Confidence 111 2357999999999999999999 86
|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=346.25 Aligned_cols=202 Identities=14% Similarity=0.066 Sum_probs=167.4
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|.
T Consensus 2 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~Rtt~------------------~~g~- 62 (248)
T 1zcc_A 2 TKIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN------------------GTGP- 62 (248)
T ss_dssp CEEEETTTTTTTSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSS------------------CCSB-
T ss_pred CeEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCccccccC------------------CCcc-
Confidence 579999999999999999999999999999999999999999999999999999999 7776
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
|.++||+||++|+++. .++||||+|+|+.+++.. +.++||||.+... ...+++.+++
T Consensus 63 v~~~t~~eL~~l~~g~-----------------~~~iptL~evl~~~~~~~--~~l~iEiK~~~~~----~~~~~~~v~~ 119 (248)
T 1zcc_A 63 VGHMLSSEIDTLDAGG-----------------WFDDRFKGAIVPRLDAYL--EHLRGRAGVYIEL----KYCDPAKVAA 119 (248)
T ss_dssp STTSCHHHHTTSCSST-----------------TTCGGGTTCCCCBHHHHH--HHHTTTCEEEEEE----EESCHHHHHH
T ss_pred hhhCCHHHHHhCCCCC-----------------CCCCCCHHHHHHHHHhcC--cEEEEEeCCCCCc----ccHHHHHHHH
Confidence 9999999999999874 258999999999998731 4789999976431 0126789999
Q ss_pred HHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCc-cH
Q 005970 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSS-QT 645 (667)
Q Consensus 568 ~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~-~~ 645 (667)
+|+++++. ++++|+|||++.|.+++++ |++++++++..... ...++...++. .+.+... .. ++
T Consensus 120 ~l~~~~~~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~---------~~~~~~~~~~~-~i~~~~~-~~~~~ 184 (248)
T 1zcc_A 120 LVRHLGMV----RDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKS---------PSLVGAVHHAS-IIEITPA-QMRRP 184 (248)
T ss_dssp HHHHHTCS----TTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSS---------THHHHHTTCCS-EEEECHH-HHHSH
T ss_pred HHHHhCCC----CCEEEEECCHHHHHHHHHHCCCCcEEEEecCCcc---------HHHHHHHcCCC-EEEecHH-HhCCH
Confidence 99999987 7999999999999999999 99999999764210 11233334543 2222111 23 56
Q ss_pred HHHHHHHHcCCcEEEEeccCC
Q 005970 646 QLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 646 ~~v~~ah~~Gl~V~vWTVn~e 666 (667)
++|+.+|++|++|++||||++
T Consensus 185 ~~v~~~~~~G~~v~~wTvn~~ 205 (248)
T 1zcc_A 185 GIIEASRKAGLEIMVYYGGDD 205 (248)
T ss_dssp HHHHHHHHHTCEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCH
Confidence 899999999999999999985
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=331.79 Aligned_cols=201 Identities=12% Similarity=0.090 Sum_probs=163.5
Q ss_pred CceeEEEecCC--CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccC
Q 005970 406 ANLLVISKNGA--SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (667)
Q Consensus 406 ~~~~iiaHRG~--~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~ 483 (667)
.+|.||||||+ ++.+||||++||++|++.|||+||+|||+||||++||+||.+++| +
T Consensus 3 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~~--~------------------- 61 (238)
T 3no3_A 3 DNTKVIAHRGYWKTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQG--K------------------- 61 (238)
T ss_dssp CCCEEEETTSSCSSTTCCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEETT--E-------------------
T ss_pred CCCeEEeCCCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCCCC--C-------------------
Confidence 46899999999 689999999999999999999999999999999999999999997 3
Q ss_pred CCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHH
Q 005970 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTN 563 (667)
Q Consensus 484 ~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 563 (667)
.|.++||+||++|+++. +++||||+|+|+.+++.+. +.++||||.+.... ....+++
T Consensus 62 ---~v~~~t~~el~~l~~~~-----------------~~~iptL~evl~~~~~~~~-~~l~iEiK~~~~~~--~~~~~~~ 118 (238)
T 3no3_A 62 ---HIQSCTYDELKDLQLSN-----------------GEKLPTLEQYLKRAKKLKN-IRLIFELKSHDTPE--RNRDAAR 118 (238)
T ss_dssp ---EGGGSCHHHHTTCBCTT-----------------SCBCCBHHHHHHHHHHCTT-CEEEEEECCCSSHH--HHHHHHH
T ss_pred ---ChHhCCHHHHhhCCCCC-----------------CCcCCcHHHHHHHHhhcCC-ceEEEEeCCCCCcc--hhHHHHH
Confidence 39999999999999862 3789999999999987532 48999999765321 1236889
Q ss_pred HHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCC-C
Q 005970 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRG-T 641 (667)
Q Consensus 564 ~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~-~ 641 (667)
.++++|+++++. ++++++||+++.|.+++++ |++++++++... .+ ..+ ...++. .+.+... +
T Consensus 119 ~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~----~~---~~~----~~~~~~-~~~~~~~~~ 182 (238)
T 3no3_A 119 LSVQMVKRMKLA----KRTDYISFNMDACKEFIRLCPKSEVSYLNGEL----SP---MEL----KELGFT-GLDYHYKVL 182 (238)
T ss_dssp HHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCTTSCEEECSSCS----CH---HHH----HHTTCC-EEEEEHHHH
T ss_pred HHHHHHHHcCCc----CCEEEEECCHHHHHHHHHHCCCCeEEEEeCCC----CH---HHH----HHCCCc-eEeccHHhh
Confidence 999999999987 7999999999999999999 999999997642 11 111 222332 1111111 1
Q ss_pred CccHHHHHHHHHcCCcEEEEeccCC
Q 005970 642 SSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 642 ~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
..++++|+.+|++|++|++||||++
T Consensus 183 ~~~~~~v~~~~~~G~~v~~WTVn~~ 207 (238)
T 3no3_A 183 QSHPDWVKDCKVLGMTSNVWTVDDP 207 (238)
T ss_dssp HHSTTHHHHHHHTTCEEEEECCCSH
T ss_pred hCCHHHHHHHHHCCCEEEEECCCCH
Confidence 2245899999999999999999984
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=336.01 Aligned_cols=206 Identities=15% Similarity=0.201 Sum_probs=167.7
Q ss_pred ccCCceeEEEecCCCC-CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccc
Q 005970 403 SKSANLLVISKNGASG-DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (667)
Q Consensus 403 ~~~~~~~iiaHRG~~~-~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~ 481 (667)
....+|+||||||+++ .+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+
T Consensus 27 ~~~~~~~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~Vv~HD~~l~rtt~----------------- 89 (292)
T 3mz2_A 27 ADDRIPLISGHRGGRGKGYPENSMETFENTLSYTPATFEIDPRLTKDSVIVLFHDDTLERTSN----------------- 89 (292)
T ss_dssp CTTCCCEEEEGGGCCBTTBCTTCHHHHHHHHHHCCCEEEECEEECTTCCEEECCSSSSTTTBS-----------------
T ss_pred CCCCCCEEEECCCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeECCCCcEEEECCchhcccCC-----------------
Confidence 3456799999999985 7999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccH
Q 005970 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSV 561 (667)
Q Consensus 482 ~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 561 (667)
++|. |.++||+||++|+++.+. ..|. .++||||+|+|+.++.. +.++||+|...
T Consensus 90 -~~g~-v~~~t~~el~~l~~~~~~----------~~~~-~~~iptL~evl~~~~~~---~~l~iE~K~~~---------- 143 (292)
T 3mz2_A 90 -GTGK-VSDYTWEELQNFRLKDPE----------GNIT-NYRIPTLEEAIRWARGK---TILILDKKDVP---------- 143 (292)
T ss_dssp -CCSC-GGGSCHHHHTTSCBBCTT----------CCBC-SCCCCBHHHHHHHHTTT---CCEEECCSSSC----------
T ss_pred -CCCc-hhhCcHHHHhcCCCCCCC----------CccC-CcCCCCHHHHHHHhCCC---cEEEEEECCCc----------
Confidence 6775 999999999999987532 2244 37999999999999865 47999998642
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCC----eeEE
Q 005970 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLT----MSLY 636 (667)
Q Consensus 562 ~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~----~~i~ 636 (667)
.+.++++|+++++. ++++++||+++.|++++++ |++++++++.. ...+..+.. .++. ....
T Consensus 144 ~~~v~~~l~~~~~~----~~vii~Sf~~~~l~~~~~~~p~~~~~~l~~~------~~~l~~~~~----~g~~~~~~~~~~ 209 (292)
T 3mz2_A 144 MERTAQLITDMQAE----PYVMITVHDGASARFFYEKNPNFMFEAFVKT------KEAVQDYED----NGIPWSHIMAYV 209 (292)
T ss_dssp HHHHHHHHHHTTCT----TTEEEEESSHHHHHHHHHHCTTCCEEEECCS------HHHHHHHHH----TTCCGGGEEEEE
T ss_pred HHHHHHHHHHcCCC----CCEEEEECCHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHH----hCCChhheeeee
Confidence 26889999999987 7999999999999999999 99999999753 122222221 1221 1111
Q ss_pred eCCCCCccHHHHHHHHHcCCcEEEEeccC
Q 005970 637 LKRGTSSQTQLWRSTHITRELVLMELLQN 665 (667)
Q Consensus 637 ~~~~~~~~~~~v~~ah~~Gl~V~vWTVn~ 665 (667)
.......++++|+.+|++|++|++||||+
T Consensus 210 ~~~~~~~~~~~V~~ah~~G~~V~vWTv~t 238 (292)
T 3mz2_A 210 GPKITPEVREVIDMLHERGVMCMISTAPS 238 (292)
T ss_dssp ESSCCHHHHHHHHHHHHTTBCEEEECTTT
T ss_pred cccccccCHHHHHHHHHCCCEEEEEeCCC
Confidence 22222346799999999999999999986
|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=330.14 Aligned_cols=195 Identities=21% Similarity=0.216 Sum_probs=156.0
Q ss_pred CCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCC
Q 005970 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (667)
Q Consensus 405 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~ 484 (667)
....+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++
T Consensus 10 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~------------------~~ 71 (234)
T 1o1z_A 10 HHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFG------------------LD 71 (234)
T ss_dssp CCCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHC------------------EE
T ss_pred cceEEEEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeEecCCCEEEEcCCcHHhcCC------------------cC
Confidence 346899999999999999999999999999999999999999999999999999999999 67
Q ss_pred CcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHH
Q 005970 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (667)
Q Consensus 485 g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (667)
|. |.++||+||++|+ + ++||||+|+|+.+++. +.++||||.+. .+++
T Consensus 72 g~-v~d~T~~eL~~l~-~-------------------~~iptL~evL~~~~~~---~~l~iEiK~~~---------~~~~ 118 (234)
T 1o1z_A 72 VK-IRDATVSELKELT-D-------------------GKITTLKEVFENVSDD---KIINIEIKERE---------AADA 118 (234)
T ss_dssp EE-GGGSCHHHHHHHT-T-------------------TCCCBHHHHHHHSCTT---SEEEEEECCGG---------GHHH
T ss_pred cC-cccCcHHHHhcCC-C-------------------CCCCCHHHHHHhcccC---CeEEEEeCCcc---------HHHH
Confidence 75 9999999999987 2 6899999999999875 58999999643 4678
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchh-hhhHHHHHHHHHhhhhcCCCeeEEeCCC-C
Q 005970 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-DALNQTIEDIKKFADSVVLTMSLYLKRG-T 641 (667)
Q Consensus 565 v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~-~~~~~~l~~~~~~a~~i~~~~~i~~~~~-~ 641 (667)
+++++++ . ++++++||+ |.+++++ |++++++++..... +. ......+. + -++. .+.+... +
T Consensus 119 v~~~l~~---~----~~vii~Sf~---l~~~~~~~p~~~~~~l~~~~~~~~~-~~~~~~~~--~--~~~~-~i~~~~~~~ 182 (234)
T 1o1z_A 119 VLEISKK---R----KNLIFSSFD---LDLLDEKFKGTKYGYLIDEENYGSI-ENFVERVE--K--ERPY-SLHVPYQAF 182 (234)
T ss_dssp HHHHHTT---C----CSEEEEESC---HHHHHHHCTTSCEEEECCTTTTCSH-HHHHHHHH--H--HCCS-EEEEEGGGG
T ss_pred HHHHHhc---c----CCEEEEchh---HHHHHhhCCCCcEEEEeccccccCH-HHHHHHcC--C--CCCC-EEEeCHHHh
Confidence 8888887 3 699999999 9999999 99999999875211 11 01111111 1 0112 2222111 2
Q ss_pred Ccc--HHHHHHHHHcCCcEEEEeccCC
Q 005970 642 SSQ--TQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 642 ~~~--~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
..+ +++|+.+|++|++|++||||++
T Consensus 183 g~~~~~~~v~~~~~~G~~v~~wTvn~~ 209 (234)
T 1o1z_A 183 ELEYAVEVLRSFRKKGIVIFVWTLNDP 209 (234)
T ss_dssp GSHHHHHHHHHHHHTTCEEEEESCCCH
T ss_pred cCCccHHHHHHHHHcCCEEEEeCCCCH
Confidence 013 7899999999999999999984
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=326.17 Aligned_cols=251 Identities=16% Similarity=0.154 Sum_probs=180.8
Q ss_pred CCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCC
Q 005970 88 TGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (667)
Q Consensus 88 ~~~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (667)
.+++|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.
T Consensus 14 ~~~~~~iiaHRG~~~~~pENTl~af~~A~~~g~d--~iE~Dv~~TkDg~~vv~HD~~l~r~t~~~--------------- 76 (278)
T 3i10_A 14 KSNKVLVVAHRGNWRSAPENSTAAIDSAIAMKVD--IVEIDIQKTKDGQLILMHDNTLDRTTTGK--------------- 76 (278)
T ss_dssp TCCSCEEEEETSCTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBSTTTBSCC---------------
T ss_pred CCCCCEEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCeEEEecCcchhhcCCCC---------------
Confidence 4567999999999999999999999999999999 99999999999999999999999999943
Q ss_pred CCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhcCCcHHHHHHHHHhh
Q 005970 168 PTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (667)
Q Consensus 168 ~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~ 247 (667)
+.|.++||+||++|+++.++. .+. +++||||+|+|+++++ ++.++|+.. ..+++.+++++++
T Consensus 77 ----g~v~~~t~~el~~l~~~~~~~----~~~--~~~iptL~evl~~~~~-~~~~nie~~-------~~~~~~v~~~l~~ 138 (278)
T 3i10_A 77 ----GEIKNWTLADIKKLKLKDKDG----KVT--NYVVPTLEEALLTAKG-KIMVNLDKA-------YDIFDDVYAILEK 138 (278)
T ss_dssp ----SBGGGSCHHHHTTSCBBCTTS----CBC--SCCCCBHHHHHHHHTT-TSEEEEESC-------GGGHHHHHHHHHH
T ss_pred ----ceeecCcHHHHhcCCCCCCCc----ccC--CCCCCCHHHHHHHhcC-CeEEEEecC-------chHHHHHHHHHHH
Confidence 379999999999999987642 233 3699999999999975 344444421 2367889999999
Q ss_pred cCCc---eEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCC-ccccccCCC
Q 005970 248 VVVN---YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPK-DYIWPVDES 323 (667)
Q Consensus 248 ~~~~---~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~-~~~~~~~~~ 323 (667)
+++. +++|+ ..++++++..+ +.+..+.++.. +....+. ..+.+..|+..+.|.. ...++. .
T Consensus 139 ~~~~~~v~i~s~--~~l~~~~~~~p--~~~~~~l~~p~--i~~~~~~-------~~~~i~~~~~~~~p~~~~~~~~~-~- 203 (278)
T 3i10_A 139 TETQNQVIMKGG--QPIETVKREFG--SYLDKVLYMPV--IDLGNKE-------AEKIITDYLKELRPAAFEIIYSD-P- 203 (278)
T ss_dssp HTCGGGEEEEES--SCHHHHHHHHG--GGTTTSEEEEE--EETTSTT-------HHHHHHHHHHHTCCSEEEEEBCC-T-
T ss_pred cCCCCeEEEEEh--HHHHHHHHHCc--CCccceEEEee--ecccccc-------hHHHHHHHHHhcCceEEEEeecC-C-
Confidence 9874 78884 34777777642 23222211100 0000000 1344555554444432 222221 1
Q ss_pred CCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCC-----CChHHHHHHHHhC-CCcccceEecCCCCCchhhhhhh
Q 005970 324 LYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYS-----YDPLTEYLSFIDN-GDFSVDGVLSDFPLTPSAAVDCF 395 (667)
Q Consensus 324 ~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~-----~d~~~e~~~li~~-G~~gVDGIiTD~P~~~~~~l~~~ 395 (667)
....+.+++.+|++|++|++||+.++.. ..+. .|+...|..++++ | ||||+||+|+.+.++++..
T Consensus 204 --~~~~~~~v~~~~~~g~~v~~nTlw~~~~--~g~~d~~a~~d~~~~~~~l~~~~G---vd~I~TD~P~~l~~yL~~~ 274 (278)
T 3i10_A 204 --KNPLPPKIKQLLFKKSLIWYNTLWGSLA--GNHDDNLALTDPEKSYGYLIEQLG---ARILQTDQPAYLLDYLRKK 274 (278)
T ss_dssp --TCSSHHHHHHHHTTTSEEEEECSSGGGB--TTCCHHHHHHCHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHCCCEEEEEecccccc--cCccchhhccChHHHHHHHHhcCC---CCEEEeCCHHHHHHHHhhc
Confidence 1223679999999999999999865421 1111 1566789999998 8 9999999999999999765
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=316.13 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=156.0
Q ss_pred cCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccC
Q 005970 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (667)
Q Consensus 404 ~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~ 483 (667)
...++.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+ ++
T Consensus 4 ~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lT~Dg~lVv~HD~~l~--~g------------------- 62 (224)
T 1vd6_A 4 FRQRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTP--LG------------------- 62 (224)
T ss_dssp ---CCEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEET--TE-------------------
T ss_pred CCCCceEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEecCCcEEEECCCccC--CC-------------------
Confidence 345689999999999999999999999999999999999999999999999999998 33
Q ss_pred CCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHH-hcCCcceEEEEeecchhhhhhhcccHH
Q 005970 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAK-NANSLSGVLISIENAVYLAEKQGMSVT 562 (667)
Q Consensus 484 ~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~-~~~~~~~l~iEiK~~~~~~~~~~~~~~ 562 (667)
.|.++||+||++|+ ++||||+|+|+.++ .. .+.++||||...... ..++
T Consensus 63 ---~v~~~t~~eL~~l~---------------------~~iptL~evl~~~~~~~--~~~l~iEiK~~~~~~----~~~~ 112 (224)
T 1vd6_A 63 ---PVFQVDYADLKAQE---------------------PDLPRLEEVLALKEAFP--QAVFNVELKSFPGLG----EEAA 112 (224)
T ss_dssp ---EGGGSCHHHHHHHS---------------------TTCCBHHHHHGGGGTCT--TCEEEEEECCCTTSH----HHHH
T ss_pred ---ChhhCCHHHHHhcC---------------------CCCCCHHHHHHhhhccC--CceEEEEECCCCCcc----HHHH
Confidence 39999999999986 36999999999998 32 258999999765421 2467
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCC
Q 005970 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGT 641 (667)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~ 641 (667)
++++++|++ . ++++|+|||++.|..++++ |++++++++.... ..++..+++. .+.+...
T Consensus 113 ~~v~~~l~~---~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~-~i~~~~~- 172 (224)
T 1vd6_A 113 RRLAALLRG---R----EGVWVSSFDPLALLALRKAAPGLPLGFLMAEDH-----------SALLPCLGVE-AVHPHHA- 172 (224)
T ss_dssp HHHHHHTTT---C----SSEEEEESCHHHHHHHHHHCTTSCEEEEESSCC-----------GGGGGGSCCS-EEEEBGG-
T ss_pred HHHHHHHhc---C----CcEEEEeCCHHHHHHHHHHCCCCCEEEEecccc-----------HHHHHHcCCc-EEecCcc-
Confidence 888888876 3 6899999999999999999 9999999987421 1233344543 2333222
Q ss_pred CccHHHHHHHHHcCCcEEEEeccCC
Q 005970 642 SSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 642 ~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
..++++|+.+|++|++|++||||++
T Consensus 173 ~~~~~~v~~~~~~G~~v~~wtvn~~ 197 (224)
T 1vd6_A 173 LVTEEAVAGWRKRGLFVVAWTVNEE 197 (224)
T ss_dssp GCCHHHHHHHHHTTCEEEEECCCCH
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCH
Confidence 2357999999999999999999974
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=320.82 Aligned_cols=212 Identities=18% Similarity=0.178 Sum_probs=169.5
Q ss_pred ccCCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCcccccccccc
Q 005970 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (667)
Q Consensus 403 ~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~ 482 (667)
....+++||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+
T Consensus 13 ~~~~~~~iiaHRG~~~~~pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~vv~HD~~l~r~t~------------------ 74 (278)
T 3i10_A 13 PKSNKVLVVAHRGNWRSAPENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDRTTT------------------ 74 (278)
T ss_dssp TTCCSCEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBSTTTBS------------------
T ss_pred CCCCCCEEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCeEEEecCcchhhcCC------------------
Confidence 45567999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHH
Q 005970 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVT 562 (667)
Q Consensus 483 ~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 562 (667)
+.|. |.++||+||++|+++.++ ..+. .++||||+|+|+.+++. +.++||. . . .++
T Consensus 75 ~~g~-v~~~t~~el~~l~~~~~~----------~~~~-~~~iptL~evl~~~~~~---~~~nie~--~-~-------~~~ 129 (278)
T 3i10_A 75 GKGE-IKNWTLADIKKLKLKDKD----------GKVT-NYVVPTLEEALLTAKGK---IMVNLDK--A-Y-------DIF 129 (278)
T ss_dssp CCSB-GGGSCHHHHTTSCBBCTT----------SCBC-SCCCCBHHHHHHHHTTT---SEEEEES--C-G-------GGH
T ss_pred CCce-eecCcHHHHhcCCCCCCC----------cccC-CCCCCCHHHHHHHhcCC---eEEEEec--C-c-------hHH
Confidence 7775 999999999999998643 1233 48999999999999864 3555553 1 1 467
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCC-eeEEeCCC
Q 005970 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLT-MSLYLKRG 640 (667)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~-~~i~~~~~ 640 (667)
++|+++|+++++. ++++++|+ ..+..++++ |++++++++...+....+...+.+.+|+..+++. ..+.....
T Consensus 130 ~~v~~~l~~~~~~----~~v~i~s~--~~l~~~~~~~p~~~~~~l~~p~i~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~ 203 (278)
T 3i10_A 130 DDVYAILEKTETQ----NQVIMKGG--QPIETVKREFGSYLDKVLYMPVIDLGNKEAEKIITDYLKELRPAAFEIIYSDP 203 (278)
T ss_dssp HHHHHHHHHHTCG----GGEEEEES--SCHHHHHHHHGGGTTTSEEEEEEETTSTTHHHHHHHHHHHTCCSEEEEEBCCT
T ss_pred HHHHHHHHHcCCC----CeEEEEEh--HHHHHHHHHCcCCccceEEEeeecccccchHHHHHHHHHhcCceEEEEeecCC
Confidence 8999999999998 79999994 469999999 9998877765422222223345567777777776 33332222
Q ss_pred CCccHHHHHHHHHcCCcEEEEec
Q 005970 641 TSSQTQLWRSTHITRELVLMELL 663 (667)
Q Consensus 641 ~~~~~~~v~~ah~~Gl~V~vWTV 663 (667)
....+++|+.+|++|++|++||+
T Consensus 204 ~~~~~~~v~~~~~~g~~v~~nTl 226 (278)
T 3i10_A 204 KNPLPPKIKQLLFKKSLIWYNTL 226 (278)
T ss_dssp TCSSHHHHHHHHTTTSEEEEECS
T ss_pred ccchHHHHHHHHHCCCEEEEEec
Confidence 23447899999999999999995
|
| >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-32 Score=286.72 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=153.4
Q ss_pred CCC-EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCC---CcccccccccccccccccccC
Q 005970 90 DPP-FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLK---LDNASNIAQIFKTQQKNYLVN 165 (667)
Q Consensus 90 ~~~-~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~---l~rtt~~~~~~~~~~~~~~~~ 165 (667)
.+| +||||| |||++||+.|++.||| +||+|||+ |||++||+||.+ |+|||++.
T Consensus 4 ~~p~~iiaHr-------ENTl~Af~~A~~~Gad--~IE~DV~l-kDG~lVv~HD~~~~~l~Rtt~~~------------- 60 (285)
T 1xx1_A 4 RRPIWNLAHM-------VNAVAQIPDFLDLGAN--ALEADVTF-KGSVPTYTYHGTPCDFGRDCIRW------------- 60 (285)
T ss_dssp SEEEEEEESC-------CCSTTHHHHHHHHTCS--EEEEEEEE-ETTEEEEEECCSSCCTTSCSCCE-------------
T ss_pred CCCcEEEEeh-------hccHHHHHHHHHhCCC--EEEEEEEE-ECCEEEEEcCCcccccccccCCC-------------
Confidence 456 899999 9999999999999999 99999999 999999999999 99999943
Q ss_pred CCCCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhhc----CCcHHHHH
Q 005970 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQH----NLSMRSFV 241 (667)
Q Consensus 166 g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~~----~~~~~~~l 241 (667)
+.|.|+ |+||++|++ ++ .+.|.+ .|+ .++||||.+...... +..+++.+
T Consensus 61 ------g~v~d~-l~eL~~l~~--~~---~~~~~~----------~L~-----~l~iEiK~~~~~~~~~~~~~~~~~~~l 113 (285)
T 1xx1_A 61 ------EYFNVF-LKTLREYTT--PG---NAKYRD----------GFI-----LFVLDLKTGSLSNDQVRPAGENVAKEL 113 (285)
T ss_dssp ------EEHHHH-HHHHHHHTS--TT---CTTCCT----------TCC-----EEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ------ccHHHH-HHHHHHccc--CC---CCcccc----------ccc-----EEEEecCCCcccccccchhhhhHHHHH
Confidence 379999 999999998 31 233333 222 799999976432110 11133333
Q ss_pred HHHHhhc----CC----ceEecCCHHHHHH-HHhh-------hCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh
Q 005970 242 LSVSRSV----VV----NYISSPEVNFLRS-IAAR-------FRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT 305 (667)
Q Consensus 242 ~~~l~~~----~~----~~i~SFd~~~L~~-l~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~ 305 (667)
++.+... .. ++++||++..|.+ +++. . | ..++.+.+ ..... .+... +..+..
T Consensus 114 l~~~~~~~~~~~~~~~~v~i~SF~~~~l~~~~~~~~~~~~~~~-p-~~~~~~l~-~~~~~--~~~~~-------~~~~~~ 181 (285)
T 1xx1_A 114 LQNYWNNGNNGGRAYVVLSLPDIGHYEFVRGFKEVLKKEGHED-L-LEKVGYDF-SGPYL--PSLPT-------LDATHE 181 (285)
T ss_dssp HHHTSGGGSSCCCCEEEEEESCGGGHHHHHHHHHHHHHTTCGG-G-GGGEEEEE-CCCCS--SSCCC-------HHHHHH
T ss_pred HHHHhhccccccccceeEEEEeCCHHHHHHHHHHHhhhccccC-c-ccceEEec-ccccc--cchhh-------HHHHHH
Confidence 3333332 23 5899999999999 9987 4 3 56777633 21100 00001 111222
Q ss_pred hcceecCCCcccc-ccCC------CCCCCCChHHHHHHHHcCC--eEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcc
Q 005970 306 FASGILVPKDYIW-PVDE------SLYLLPHTTIVLDAHKERL--EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFS 376 (667)
Q Consensus 306 ~a~~i~~~~~~~~-~~~~------~~~l~~~~~~v~~ah~~Gl--~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~g 376 (667)
++..++... ..+ +... ..+...++.+++.+|++|+ +|++||||++ ++|++++++|
T Consensus 182 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Glg~~V~~WTvn~~------------~~~~~l~~~G--- 245 (285)
T 1xx1_A 182 AYKKAGVDG-HIWLSDGLTNFSPLGDMARLKEAIKSRDSANGFINKIYYWSVDKV------------STTKAALDVG--- 245 (285)
T ss_dssp HHHHHTCCS-CBEEEECSCCSSHHHHHHHHHHHHHHHTSTTCCCCEEEEECCCSH------------HHHHHHHHHT---
T ss_pred HHHHhCCCC-ccccccccccccccccHHHHhHHHHHHHHhcCCCCeEEEeeCCCH------------HHHHHHHhcC---
Confidence 222222111 000 0000 0000113668999999999 9999999754 7899999888
Q ss_pred cceEecCCCCCchhhhhhh
Q 005970 377 VDGVLSDFPLTPSAAVDCF 395 (667)
Q Consensus 377 VDGIiTD~P~~~~~~l~~~ 395 (667)
|||||||+|+.++++++..
T Consensus 246 VDgIiTD~P~~~~~~l~~~ 264 (285)
T 1xx1_A 246 VDGIMTNYPNVLIGVLKES 264 (285)
T ss_dssp CSEEEESCHHHHHHHHHST
T ss_pred CCEEEeCCHHHHHHHHhhh
Confidence 9999999999988888654
|
| >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-29 Score=260.21 Aligned_cols=200 Identities=8% Similarity=0.027 Sum_probs=138.0
Q ss_pred Cce-eEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCc---ccccccCCCCccCCccccccccc
Q 005970 406 ANL-LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFIN---LINSTNAAQSKFNSITTTIPEIM 481 (667)
Q Consensus 406 ~~~-~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~---L~r~t~v~~~~~~~~~~~~~~~~ 481 (667)
++| +||||| |||++||++|+++|||+||+|||+ |||++||+||.+ |+|+|+
T Consensus 4 ~~p~~iiaHr-------ENTl~Af~~A~~~Gad~IE~DV~l-kDG~lVv~HD~~~~~l~Rtt~----------------- 58 (285)
T 1xx1_A 4 RRPIWNLAHM-------VNAVAQIPDFLDLGANALEADVTF-KGSVPTYTYHGTPCDFGRDCI----------------- 58 (285)
T ss_dssp SEEEEEEESC-------CCSTTHHHHHHHHTCSEEEEEEEE-ETTEEEEEECCSSCCTTSCSC-----------------
T ss_pred CCCcEEEEeh-------hccHHHHHHHHHhCCCEEEEEEEE-ECCEEEEEcCCcccccccccC-----------------
Confidence 455 999999 999999999999999999999999 999999999999 999999
Q ss_pred cCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhh---hc
Q 005970 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK---QG 558 (667)
Q Consensus 482 ~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~---~~ 558 (667)
++|. |.++ ++||++|++. + ++.|.+ .|+ .++||||.+...... .+
T Consensus 59 -~~g~-v~d~-l~eL~~l~~~--~---------~~~~~~---------~L~---------~l~iEiK~~~~~~~~~~~~~ 106 (285)
T 1xx1_A 59 -RWEY-FNVF-LKTLREYTTP--G---------NAKYRD---------GFI---------LFVLDLKTGSLSNDQVRPAG 106 (285)
T ss_dssp -CEEE-HHHH-HHHHHHHTST--T---------CTTCCT---------TCC---------EEEEEECCTTCCHHHHHHHH
T ss_pred -CCcc-HHHH-HHHHHHcccC--C---------CCcccc---------ccc---------EEEEecCCCcccccccchhh
Confidence 7776 9999 9999999982 1 123332 221 599999986542100 00
Q ss_pred ccHHHHHHHHHHhcCCCCCCCce----EEEEeCCHHHHHH-HHhc--------cCCcEEEEeccchhhhhHHHHHHHHHh
Q 005970 559 MSVTNSVMEALGNAGYNKQTALK----VMIQSTDSSVLMK-LREK--------TSYELVYKVKENIRDALNQTIEDIKKF 625 (667)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~----v~i~SFd~~~L~~-~~~~--------p~~~~~~L~~~~~~~~~~~~l~~~~~~ 625 (667)
..+++. +++++++.....++ ++|+||++.+|.+ ++++ |.+++++++..... .+...+..+..+
T Consensus 107 ~~~~~~---ll~~~~~~~~~~~~~~~~v~i~SF~~~~l~~~~~~~~~~~~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~ 182 (285)
T 1xx1_A 107 ENVAKE---LLQNYWNNGNNGGRAYVVLSLPDIGHYEFVRGFKEVLKKEGHEDLLEKVGYDFSGPYL-PSLPTLDATHEA 182 (285)
T ss_dssp HHHHHH---HHHHTSGGGSSCCCCEEEEEESCGGGHHHHHHHHHHHHHTTCGGGGGGEEEEECCCCS-SSCCCHHHHHHH
T ss_pred hhHHHH---HHHHHhhccccccccceeEEEEeCCHHHHHHHHHHHhhhccccCcccceEEecccccc-cchhhHHHHHHH
Confidence 113333 56666553111136 9999999999999 9986 88999999864310 000012223334
Q ss_pred hhhcCCCeeEE-eC--------C-CCCccHHHHHHHHHcCC--cEEEEeccCC
Q 005970 626 ADSVVLTMSLY-LK--------R-GTSSQTQLWRSTHITRE--LVLMELLQNS 666 (667)
Q Consensus 626 a~~i~~~~~i~-~~--------~-~~~~~~~~v~~ah~~Gl--~V~vWTVn~e 666 (667)
+..+++...++ +. . ....++.+|+++|++|+ +|++||||++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Glg~~V~~WTvn~~ 235 (285)
T 1xx1_A 183 YKKAGVDGHIWLSDGLTNFSPLGDMARLKEAIKSRDSANGFINKIYYWSVDKV 235 (285)
T ss_dssp HHHHTCCSCBEEEECSCCSSHHHHHHHHHHHHHHHTSTTCCCCEEEEECCCSH
T ss_pred HHHhCCCCccccccccccccccccHHHHhHHHHHHHHhcCCCCeEEEeeCCCH
Confidence 44444321110 00 0 01134678999999999 9999999984
|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=192.33 Aligned_cols=226 Identities=14% Similarity=0.081 Sum_probs=141.1
Q ss_pred CCCC-EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC---ccccccccccccccccccc
Q 005970 89 GDPP-FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL---DNASNIAQIFKTQQKNYLV 164 (667)
Q Consensus 89 ~~~~-~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l---~rtt~~~~~~~~~~~~~~~ 164 (667)
..+| .+|||| |||++||+.|++.||+ +||+||++|+||++|++||... .|.+....
T Consensus 25 ~~rp~~~i~H~-------vNTl~~~~~a~~~GAn--~IE~DV~~~~dg~~v~~hhg~pcdc~r~C~~~~----------- 84 (302)
T 3rlg_A 25 NRRPIWIMGAM-------VNAIGQIDEFVNLGAN--SIETDVSFDDNANPEYTYHGIPCDCGRNCKKYE----------- 84 (302)
T ss_dssp CCEEEEEEESC-------CCSHHHHHHHHHTTCS--EEEEEECBCTTSCBCBCCCCSSCCTTCCSCCCC-----------
T ss_pred CCCceEEEeeh-------hhhHHHHHHHHHcCCC--EEEEEEEECCCCCEEEEECCCCcchhccCCCCc-----------
Confidence 3455 699997 9999999999999999 9999999999999999999844 45444211
Q ss_pred CCCCCCccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCCCceEEeccCchhhhh----cCCcHHHH
Q 005970 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQ----HNLSMRSF 240 (667)
Q Consensus 165 ~g~~~~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~~~~~ieiK~~~~~~~----~~~~~~~~ 240 (667)
.+.+ .+++|+++..-. ++.|.. +=.-+++++|.+..... .+.++++.
T Consensus 85 --------~~~~-~l~~lr~~ttpg-----~~k~~~---------------~l~lv~~DlK~~~l~~~~~~~aG~~la~k 135 (302)
T 3rlg_A 85 --------NFND-FLKGLRSATTPG-----NSKYQE---------------KLVLVVFDLKTGSLYDNQANDAGKKLAKN 135 (302)
T ss_dssp --------BHHH-HHHHHHHHHSTT-----STTCCT---------------TCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred --------cHHH-HHHHHHHhcCCC-----CCcccc---------------ceEEEEEEcCCCCCCHHHHHHhHHHHHHH
Confidence 3444 677776654311 122222 01347889996554332 35667777
Q ss_pred HHHHHhhcCC------ceEecCCHHHHHHHHhhh---CCCC-----CceEEEeccCCccCCCCCcchhHHhh--cHHHHH
Q 005970 241 VLSVSRSVVV------NYISSPEVNFLRSIAARF---RPSM-----TKLVFRFLGKSEIEPTTNQTYGSLLK--NLTFIK 304 (667)
Q Consensus 241 l~~~l~~~~~------~~i~SFd~~~L~~l~~~~---~~~~-----~~~~~~l~~~~~~~~~~~~~y~~~~~--~l~~i~ 304 (667)
+++.+-..|. +++|+|+...++.++... .... -+..|-+...++ ...+..+.+ ++....
T Consensus 136 Ll~~~w~~g~~~~ra~vilsi~~~~~~~~l~gf~~~l~~~g~~~LldkvG~Dfs~n~d-----l~~i~~~~~~~Gi~~h~ 210 (302)
T 3rlg_A 136 LLQHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLTKDGHPELMDKVGHDFSGNDD-----IGDVGKAYKKAGITGHI 210 (302)
T ss_dssp HHHHTSGGGSSCCCCEEEEEESCGGGTHHHHHHHHHHHHTTCGGGGGGEEEEECSCCC-----HHHHHHHHHHTTCCSCB
T ss_pred HHHHHHhcCCCCceeEEEEecCcchHHHHHHHHHHHHhhcCHHHHhhhcCccccCCCC-----HHHHHHHHHhcCCcCcE
Confidence 7777765432 489999986555544331 0001 122332221111 112222221 222223
Q ss_pred hhcceecCCCccccccCCCCCCCCChHHHHHHHHc-----C--CeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCccc
Q 005970 305 TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKE-----R--LEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSV 377 (667)
Q Consensus 305 ~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~-----G--l~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gV 377 (667)
-+++|+.++. +. +...++.+.+. | ++|++||||++ ++|++++++| |
T Consensus 211 wqsDGItnC~--~r----------~~~rl~~ai~~RDs~~~~i~~V~vWTVNd~------------~~m~~l~~~G---V 263 (302)
T 3rlg_A 211 WQSDGITNCL--PR----------GLSRVNAAVANRDSANGFINKVYYWTVDKR------------STTRDALDAG---V 263 (302)
T ss_dssp EEEEECCTTS--CC----------CSHHHHHHHHHHTSTTCCCSEEEEECCCSH------------HHHHHHHHTT---C
T ss_pred EecCCcccce--ec----------cHHHHHHHHHhccCCCCceEEEEEEeCCCH------------HHHHHHHHcC---C
Confidence 3566777654 11 12233333333 3 79999999753 8899999988 9
Q ss_pred ceEecCCCCCchhhhhhh
Q 005970 378 DGVLSDFPLTPSAAVDCF 395 (667)
Q Consensus 378 DGIiTD~P~~~~~~l~~~ 395 (667)
||||||+|+.++++++..
T Consensus 264 DGIITD~Pd~l~~~l~~~ 281 (302)
T 3rlg_A 264 DGIMTNYPDVITDVLNEA 281 (302)
T ss_dssp SEEEESCHHHHHHHHTSH
T ss_pred CEEECCCHHHHHHHHHhc
Confidence 999999999999988654
|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=154.27 Aligned_cols=137 Identities=9% Similarity=0.069 Sum_probs=96.0
Q ss_pred CCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcc---cccccCCCCccCCccccccccc
Q 005970 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL---INSTNAAQSKFNSITTTIPEIM 481 (667)
Q Consensus 405 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L---~r~t~v~~~~~~~~~~~~~~~~ 481 (667)
.+++.+|||| |||++||+.|+++||++||+||++|+||+||++||... .|.++
T Consensus 26 ~rp~~~i~H~-------vNTl~~~~~a~~~GAn~IE~DV~~~~dg~~v~~hhg~pcdc~r~C~----------------- 81 (302)
T 3rlg_A 26 RRPIWIMGAM-------VNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNCK----------------- 81 (302)
T ss_dssp CEEEEEEESC-------CCSHHHHHHHHHTTCSEEEEEECBCTTSCBCBCCCCSSCCTTCCSC-----------------
T ss_pred CCceEEEeeh-------hhhHHHHHHHHHcCCCEEEEEEEECCCCCEEEEECCCCcchhccCC-----------------
Confidence 3456899997 99999999999999999999999999999999999854 44443
Q ss_pred cCCCcccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhh---hhc
Q 005970 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE---KQG 558 (667)
Q Consensus 482 ~~~g~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~---~~~ 558 (667)
.+..+.+ .+++|+++... .+++|.. +.+-+.+++|......+ ..|
T Consensus 82 --~~~~~~~-~l~~lr~~ttp-----------g~~k~~~------------------~l~lv~~DlK~~~l~~~~~~~aG 129 (302)
T 3rlg_A 82 --KYENFND-FLKGLRSATTP-----------GNSKYQE------------------KLVLVVFDLKTGSLYDNQANDAG 129 (302)
T ss_dssp --CCCBHHH-HHHHHHHHHST-----------TSTTCCT------------------TCCEEEEEECGGGSCGGGHHHHH
T ss_pred --CCccHHH-HHHHHHHhcCC-----------CCCcccc------------------ceEEEEEEcCCCCCCHHHHHHhH
Confidence 1112555 67777765432 1233332 12458999997654332 245
Q ss_pred ccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc
Q 005970 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK 598 (667)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~ 598 (667)
..+++++++.+-+.|..... -.|++|+|+.+-++.++..
T Consensus 130 ~~la~kLl~~~w~~g~~~~r-a~vilsi~~~~~~~~l~gf 168 (302)
T 3rlg_A 130 KKLAKNLLQHYWNNGNNGGR-AYIVLSIPDLNHYPLIKGF 168 (302)
T ss_dssp HHHHHHHHHHTSGGGSSCCC-CEEEEEESCGGGTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCce-eEEEEecCcchHHHHHHHH
Confidence 66777777776665444322 4899999999766666543
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.073 Score=60.57 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=43.6
Q ss_pred eEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccc
Q 005970 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (667)
Q Consensus 409 ~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r 461 (667)
+--+|--+ .-..-+-|..+|.+|+..||..||+|++=-.||.|||+|-.||..
T Consensus 175 i~SsHNTYL~G~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tlts 230 (624)
T 1djx_A 175 VSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTS 230 (624)
T ss_dssp ECEESSTTBSSCSSSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEECCTTSCCC
T ss_pred eecccchhhhcCcccCCcCHHHHHHHHHhCCcEEEEEeecCCCCCeEEecCCcccc
Confidence 33566542 334668899999999999999999999988899999999988743
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=91.08 E-value=0.14 Score=59.97 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=44.0
Q ss_pred ceeEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeec--CCeEEEeccCcccc
Q 005970 407 NLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINLIN 461 (667)
Q Consensus 407 ~~~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dg~~Vv~HD~~L~r 461 (667)
-.+--+|.-+ .-..-+-|..+|.+|+..||..||+|++=-. ||.|||+|-.||..
T Consensus 321 YfI~SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~ep~v~HG~Tlts 380 (799)
T 2zkm_X 321 YFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMTT 380 (799)
T ss_dssp EEECBBSSTTBSSCSSSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTTSSCC
T ss_pred heEeccccceeecCcccCcccHHHHHHHHHhCCCEEEEEeecCCCCCCCCEEEeCCcccc
Confidence 3444566542 2345688999999999999999999999776 89999999998743
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=90.45 E-value=0.16 Score=59.25 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=44.3
Q ss_pred ceeEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 407 NLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 407 ~~~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
-.+--+|.-+ .-..-+-|..+|.+|+..||..||+|++=-.||+|||+|-.||.
T Consensus 332 YfI~sshntyL~g~ql~g~ss~~~y~~aL~~gcRcvEld~wdg~~~ePvv~HG~Tlt 388 (816)
T 3qr0_A 332 YYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDGKDGEPIITHGFTMC 388 (816)
T ss_dssp EEECBBSSTTBSSCTTTSCBCSHHHHHHHHTTCCEEEEEEECCTTSSCEECCTTSSC
T ss_pred heecccccchhccccccCcccHHHHHHHHHhCCcEEEEEEecCCCCCceEccCCccc
Confidence 3444566542 23456888999999999999999999999999999999998875
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=88.58 E-value=0.3 Score=55.52 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=42.8
Q ss_pred EEeCC---CCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 95 VARGG---FSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 95 iaHRG---~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
.+|-- |.-..-+-|.++|.+|+..|+. .||+|++=-.||.|||+|-.|+
T Consensus 177 SsHNTYL~G~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~tl 228 (624)
T 1djx_A 177 SSHNTYLLEDQLTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 228 (624)
T ss_dssp EESSTTBSSCSSSCCBCHHHHHHHHHTTCC--EEEEEEECCGGGCCEECCTTSC
T ss_pred cccchhhhcCcccCCcCHHHHHHHHHhCCc--EEEEEeecCCCCCeEEecCCcc
Confidence 56754 3345678999999999999999 9999999999999999999987
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.99 E-value=0.22 Score=58.59 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=41.9
Q ss_pred eeEEEecCC---CCCCCchhHHHHHHHHHCCCCeEEcceeee--cCCeEEEeccCccc
Q 005970 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMS--KDGVPFCLSFINLI 460 (667)
Q Consensus 408 ~~iiaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lT--kDg~~Vv~HD~~L~ 460 (667)
.+--+|.-+ .-..-+-|..+|.+|+..||..||+|++=- .||+|||+|..++.
T Consensus 326 fI~ssHNtYL~g~Ql~~~ss~~~y~~aL~~gcRcvEld~wdg~~~~~ep~v~hg~t~t 383 (885)
T 3ohm_B 326 FINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMT 383 (885)
T ss_dssp EECCBSSTTBSSCSSEECBCSHHHHHHHHTTCCEEEEEEECCCSSSCCCEECSTTSEE
T ss_pred eeeccccceeccccccCcCcHHHHHHHHHhCCCEEEEEeeCCCCCCCCCEEeeCCccc
Confidence 344556542 223457789999999999999999999954 78999999999874
|
| >3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A | Back alignment and structure |
|---|
Probab=87.12 E-value=1.3 Score=45.47 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=39.2
Q ss_pred CCceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeec-CCeEEEeccCcccc
Q 005970 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSK-DGVPFCLSFINLIN 461 (667)
Q Consensus 405 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTk-Dg~~Vv~HD~~L~r 461 (667)
..-..+-+|--+-... ...+.+|++.|+.+||+||+-.. .|.+-|+|...|..
T Consensus 29 s~~T~~g~HNSY~~g~----~~~i~~qLd~GVR~LELDIw~n~~~g~~~V~Hg~~l~~ 82 (339)
T 3h4x_A 29 GTSTSVGVHNAYEKEK----YRYFADALDSGAALLELDLWSNALGRSWRVSHSNPLGN 82 (339)
T ss_dssp TSEEEEEETTTTCTTT----CSSHHHHHTTCCSEEEEEEESSSSSSSCEECSSSCSSC
T ss_pred ccceEeeccccccccC----cccHHHHHHhCCCEEEEEeecCCCCCCeEEeCCCcccc
Confidence 3345677776543221 46889999999999999999774 56799999877643
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=86.91 E-value=0.41 Score=55.98 Aligned_cols=50 Identities=18% Similarity=0.083 Sum_probs=43.1
Q ss_pred EEEeCC---CCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEec--CCeEEEccCCCC
Q 005970 94 VVARGG---FSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (667)
Q Consensus 94 iiaHRG---~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTk--Dg~~vv~HD~~l 145 (667)
-.+|-- |.-+.-+-|.++|.+|+..|+. .||+|++=-. ||.|||+|-.|+
T Consensus 324 ~SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcR--cvElD~Wdg~~~~~ep~v~HG~Tl 378 (799)
T 2zkm_X 324 NSSHNTYLTAGQFSGLSSAEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 378 (799)
T ss_dssp CBBSSTTBSSCSSSSCBCTHHHHHHHHTTCC--EEEEEEECCCTTCCSCEECCTTSS
T ss_pred eccccceeecCcccCcccHHHHHHHHHhCCC--EEEEEeecCCCCCCCCEEEeCCcc
Confidence 456664 3445678999999999999999 9999999887 999999999987
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=85.84 E-value=0.49 Score=55.23 Aligned_cols=50 Identities=20% Similarity=0.070 Sum_probs=43.3
Q ss_pred EEEeCC---CCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 94 VVARGG---FSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 94 iiaHRG---~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
-.+|.- |.-+.-+-|.++|..|+..|+. .||+|++=-.||.|||+|-.|+
T Consensus 335 ~sshntyL~g~ql~g~ss~~~y~~aL~~gcR--cvEld~wdg~~~ePvv~HG~Tl 387 (816)
T 3qr0_A 335 NSSHNTYLTGHQLTGKSSVEIYRQVLLTGCR--CLELDCWDGKDGEPIITHGFTM 387 (816)
T ss_dssp CBBSSTTBSSCTTTSCBCSHHHHHHHHTTCC--EEEEEEECCTTSSCEECCTTSS
T ss_pred cccccchhccccccCcccHHHHHHHHHhCCc--EEEEEEecCCCCCceEccCCcc
Confidence 456664 2345678999999999999999 9999999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 667 | ||||
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 4e-23 | |
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 3e-16 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 8e-11 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 6e-10 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 2e-09 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 0.002 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 98.6 bits (244), Expect = 4e-23
Identities = 59/326 (18%), Positives = 109/326 (33%), Gaps = 36/326 (11%)
Query: 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149
+ V+A G SG P+ + A ++ A L D+ +TKD+ + D LD +
Sbjct: 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVT 58
Query: 150 NIAQIFKTQQK---NYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQIL 206
++A F + + Y S+ +T Y + F++
Sbjct: 59 DVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVH 118
Query: 207 TVQDMARQI--------KPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN------Y 252
T ++ + K G++ I+ F+ Q + + L V + Y
Sbjct: 119 TFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVY 178
Query: 253 ISSPEVNFLRSIAARFRP---SMTKLVFRFLGKSEIEPTTNQTYGSLL----------KN 299
+ + + L+ I P LV E Q GS +
Sbjct: 179 LQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGA 238
Query: 300 LTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYS 359
+ + +A GI + + T +V DA + +L V +D Y+
Sbjct: 239 MKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL--PEYT 296
Query: 360 YDPLTEYLSFIDNGDFSVDGVLSDFP 385
D Y + + V+G+ +DFP
Sbjct: 297 PDVNQLYDALYN--KAGVNGLFTDFP 320
|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 78.2 bits (191), Expect = 3e-16
Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 6/198 (3%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
+VI+ GASG P T A A + G D+++ + M+KD L L T+ A
Sbjct: 4 IVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD- 62
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
+F A + + R P K+ +
Sbjct: 63 RFPDRARKDGRYYAIDFTLDEIKSLK-FTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFE 121
Query: 529 DFLEMAKNANSLSGVLISIENAV---YLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
+ +E + N +G I I + + ++G + +E L GY + KV +Q
Sbjct: 122 EEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDD-KVYLQ 180
Query: 586 STDSSVLMKLREKTSYEL 603
D+ L +++ + ++
Sbjct: 181 CFDADELKRIKNELEPKM 198
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Score = 60.4 bits (145), Expect = 8e-11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
++S GA+ P T A A+ G D+I+ V+ S DGV +
Sbjct: 4 IVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYV 47
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Score = 57.8 bits (138), Expect = 6e-10
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
+V+ G S Y T A+ KAI G + ++ V++SKDG
Sbjct: 6 IVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVV 50
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
L + GA T +++ A+ G+D ++ V ++DGV
Sbjct: 2 LRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAV 46
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Score = 38.1 bits (87), Expect = 0.002
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146
P + G +++ ++ L L + DV T+D D
Sbjct: 1 PLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTP 53
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 94.61 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 93.52 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 92.67 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 89.39 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 83.63 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-45 Score=383.81 Aligned_cols=288 Identities=21% Similarity=0.324 Sum_probs=215.5
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCC
Q 005970 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (667)
Q Consensus 90 ~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (667)
++|+||||||+++.+||||++||+.|++.||| +||+|||+||||++||+||.+|+|+|++...+...... +|.
T Consensus 1 ~~~liIaHRG~~~~~PENTl~af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~---~~~-- 73 (328)
T d1ydya1 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---DGR-- 73 (328)
T ss_dssp CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT---TSC--
T ss_pred CCCEEEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeEccCCcEEEECCchhhcccCCCCCccccccc---CCC--
Confidence 46999999999999999999999999999999 99999999999999999999999999977654433222 122
Q ss_pred CccccccCCHHhhcccccccccc-----------CCCCCCCCCCCccCCHHHHHHhhC--------CCceEEeccCchhh
Q 005970 170 PGWFSIDYTLNDLSNIILNQGVY-----------SRTDKFDGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (667)
Q Consensus 170 ~g~~v~d~t~~el~~l~~~~~~~-----------~~~~~~~~~~~~iptL~e~l~~~~--------~~~~~ieiK~~~~~ 230 (667)
+.|.++||+||++|+++.++. .+...+.+ ..+||||+|+++.++ +..+++|+|.+...
T Consensus 74 --~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~ 150 (328)
T d1ydya1 74 --YYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKS-DFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFH 150 (328)
T ss_dssp --CBGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCS-CCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHH
T ss_pred --ceeeecchhhhhccccccccccccccccccccccccccCC-CcccCcHHHHHHHHHHHhhhcCCCceeeeccCCcchh
Confidence 589999999999999887642 11222233 579999999999884 47899999999887
Q ss_pred hhcCCcHHHHHHHHHhhcCC------ceEecCCHHHHHHHHhhhCC---CCCceEEEeccCCccCC---------CCCcc
Q 005970 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAARFRP---SMTKLVFRFLGKSEIEP---------TTNQT 292 (667)
Q Consensus 231 ~~~~~~~~~~l~~~l~~~~~------~~i~SFd~~~L~~l~~~~~~---~~~~~~~~l~~~~~~~~---------~~~~~ 292 (667)
.+.+..+++.+..++++++. ++++||++..|+.+++...| ...+.+. +........ .....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
T d1ydya1 151 HQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQ-LIAYTDWNETQQKQPDGSWVNYN 229 (328)
T ss_dssp HHTTCCHHHHHHHHHHHTTCCSTTSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEE-EECCGGGCCCEEECTTSCEEECC
T ss_pred hhcchhhHHHHHHHHHHhcccCCCceEEEEecCHHHHHHHHHHcCcccccccceee-eecccccchhccccccccccccc
Confidence 77778888888888887653 48999999999999864321 1223332 221111110 01223
Q ss_pred hhHHhh--cHHHHHhhcceecCCCccccccCCCCCCCCChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHH
Q 005970 293 YGSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI 370 (667)
Q Consensus 293 y~~~~~--~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li 370 (667)
|..+.. .+..+..++.++++.+..+.+..........+.+|+.+|++|++|++||||++.. +.+..|...++..++
T Consensus 230 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~~~--~~~~~d~~~~~~~~~ 307 (328)
T d1ydya1 230 YDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL--PEYTPDVNQLYDALY 307 (328)
T ss_dssp CGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSC--CTTCSSHHHHHHHHH
T ss_pred hhhhcChhhHHHHHhhCCeeecchhhcccccccccccCCHHHHHHHHHCCCEEEEEccCChHH--hhhccCHHHHHHHHH
Confidence 444433 5778888999999888877765544445556789999999999999999998742 233345555555544
Q ss_pred hCCCcccceEecCCCCCchhhh
Q 005970 371 DNGDFSVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 371 ~~G~~gVDGIiTD~P~~~~~~l 392 (667)
. ++||||||||+|+++++++
T Consensus 308 ~--~~GVDgIiTD~P~~~~~~l 327 (328)
T d1ydya1 308 N--KAGVNGLFTDFPDKAVKFL 327 (328)
T ss_dssp T--TSCCSEEEESCHHHHHHHH
T ss_pred H--HcCCcEEEEcCHHHHHHHh
Confidence 3 4459999999999998886
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=2e-42 Score=349.61 Aligned_cols=231 Identities=16% Similarity=0.153 Sum_probs=180.2
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCcc
Q 005970 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (667)
Q Consensus 93 ~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~ 172 (667)
.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+||+. +
T Consensus 3 ~iiaHRG~~~~~pENT~~a~~~A~~~G~~--~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~-------------------~ 61 (240)
T d1zcca1 3 KIVSHRGANRFAPENTFAAADLALQQGAD--YIELDVRESADGVLYVIHDETLDRTTNGT-------------------G 61 (240)
T ss_dssp EEEETTTTTTTSCSSSHHHHHHHHHTTCS--EEEEEEEECTTCCEEECSSSBTTTTSSCC-------------------S
T ss_pred EEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEEecCCCEEEecccccccccccc-------------------c
Confidence 59999999999999999999999999999 99999999999999999999999999943 3
Q ss_pred ccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 005970 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (667)
Q Consensus 173 ~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~~~- 250 (667)
.|.++||+||++|+++.++ +..+.+ .+||||+|+|+++++ .+++||+|.+. .+.+.+++++++.
T Consensus 62 ~v~~~t~~el~~l~~~~~~---~~~~~~--~~IptL~evl~~~~~~~~l~iEiK~~~---------~~~v~~l~~~~~~~ 127 (240)
T d1zcca1 62 PVGHMLSSEIDTLDAGGWF---DDRFKG--AIVPRLDAYLEHLRGRAGVYIELKYCD---------PAKVAALVRHLGMV 127 (240)
T ss_dssp BSTTSCHHHHTTSCSSTTT---CGGGTT--CCCCBHHHHHHHHTTTCEEEEEEEESC---------HHHHHHHHHHHTCS
T ss_pred cHHHhhHHHHHHhhccCcC---ccccCC--CcCChHHHhhhcccccceeEEEEccCc---------chhhhHHHHHHHhh
Confidence 7999999999999998875 334555 699999999999974 68999999643 2356677777665
Q ss_pred --ceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCCCCC
Q 005970 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (667)
Q Consensus 251 --~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~ 328 (667)
++++||++..++++++.. | +++.++ ++... . .. .+......+..+......+ .
T Consensus 128 ~~v~~~Sf~~~~l~~~~~~~-P-~~~~~~-~~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~----------~ 182 (240)
T d1zcca1 128 RDTFYFSFSEEMRQGLQSIA-P-EFRRMM-TLDIA--K---SP-------SLVGAVHHASIIEITPAQM----------R 182 (240)
T ss_dssp TTEEEECSCHHHHHHHHHHC-T-TSEEEE-EHHHH--S---ST-------HHHHHTTCCSEEEECHHHH----------H
T ss_pred cccccccccHHHHHHHHHhh-h-ccceEE-eeccc--c---cc-------hhHHHHhcccccccchhhh----------C
Confidence 499999999999999985 3 577775 32110 0 00 1122222233332211111 1
Q ss_pred ChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhhhhhhh
Q 005970 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAH 397 (667)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~~~ 397 (667)
++.+++.+|++|++|++||+|++ .+.++.++++| ||||+||+|+++.++++...+
T Consensus 183 ~~~~v~~~~~~Gl~v~~wTvnd~-----------~~~~~~l~~~g---VdgI~TD~P~l~~~vr~~~~~ 237 (240)
T d1zcca1 183 RPGIIEASRKAGLEIMVYYGGDD-----------MAVHREIATSD---VDYINLDRPDLFAAVRSGMAE 237 (240)
T ss_dssp SHHHHHHHHHHTCEEEEECCCCC-----------HHHHHHHHHSS---CSEEEESCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEEccCCH-----------HHHHHHHHHcC---CCEEEeCcHHHHHHHHHHHHH
Confidence 46799999999999999999853 35567788877 999999999999998877643
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-41 Score=339.19 Aligned_cols=221 Identities=17% Similarity=0.169 Sum_probs=167.7
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCC
Q 005970 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (667)
Q Consensus 90 ~~~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (667)
++|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++.
T Consensus 3 ~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~--~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~~~----------------- 63 (226)
T d1o1za_ 3 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGAN--GVELDVRLSKDGKVVVSHDEDLKRLFGLD----------------- 63 (226)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSEEHHHHCEE-----------------
T ss_pred CCCEEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEccCCCEEeeccceeeeeeccc-----------------
Confidence 47999999999999999999999999999999 99999999999999999999999999954
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhCC-CceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 170 ~g~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~~-~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
+.|+++||+||++++. .+||||+|+|+++++ ..++||+|.+. ..+.++++++++
T Consensus 64 --~~i~~~t~~el~~l~~---------------~~iptL~evl~~~~~~~~l~iEiK~~~--------~~~~~~~~~~~~ 118 (226)
T d1o1za_ 64 --VKIRDATVSELKELTD---------------GKITTLKEVFENVSDDKIINIEIKERE--------AADAVLEISKKR 118 (226)
T ss_dssp --EEGGGSCHHHHHHHTT---------------TCCCBHHHHHHHSCTTSEEEEEECCGG--------GHHHHHHHHTTC
T ss_pred --ceeeecchhhhhhhhh---------------hcchhHHHHHHHhhcccccchhhcccc--------ccchhhhhhhhc
Confidence 3799999999998752 389999999999974 67999999653 356788888888
Q ss_pred CCceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHh-hcceecCCCccccccCCCCCCC
Q 005970 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLL 327 (667)
Q Consensus 249 ~~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~~~~~~~~~~l~ 327 (667)
+..+++||+++.|+++.+. .+..+.+ .... ......+ .+.+.. .+.++.+++..+. ..
T Consensus 119 ~~vi~~SF~~~~l~~~~~~-----~~~~~l~-~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~ 177 (226)
T d1o1za_ 119 KNLIFSSFDLDLLDEKFKG-----TKYGYLI-DEEN-----YGSIENF---VERVEKERPYSLHVPYQAFE-------LE 177 (226)
T ss_dssp CSEEEEESCHHHHHHHCTT-----SCEEEEC-CTTT-----TCSHHHH---HHHHHHHCCSEEEEEGGGGG-------SH
T ss_pred cceeccccchHHHHHHHhc-----cceeeEe-cccc-----cchhHHH---HHhhhhcccccccCchhhhh-------hh
Confidence 8789999999988766543 4555422 2111 0111111 111111 1333443332221 00
Q ss_pred CChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhh
Q 005970 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (667)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~ 391 (667)
..+++++.+|++|++|++||||+ .++.+++++| |||||||+|+.++++
T Consensus 178 ~~~~~v~~~~~~g~~v~~wTVN~-------------~~~~~~l~~g---VdgIiTD~P~~~~~~ 225 (226)
T d1o1za_ 178 YAVEVLRSFRKKGIVIFVWTLND-------------PEIYRKIRRE---IDGVITDEVELFVKL 225 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEESCCC-------------HHHHHHHGGG---CSEEEESCHHHHHHT
T ss_pred hhHHHHHHHHHCCCEEEEECCCh-------------HHHHHHHHcC---CCEEEECcHHHHHhc
Confidence 12569999999999999999975 2455678776 999999999987765
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=7.5e-41 Score=338.02 Aligned_cols=203 Identities=18% Similarity=0.191 Sum_probs=164.3
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
..||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+++|+|| ++|.
T Consensus 2 t~iiaHRG~~~~~pENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~~- 62 (240)
T d1zcca1 2 TKIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN------------------GTGP- 62 (240)
T ss_dssp CEEEETTTTTTTSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSS------------------CCSB-
T ss_pred CEEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccccccc------------------cccc-
Confidence 369999999999999999999999999999999999999999999999999999999 7775
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
|.++||+||++|+++.++ +..+.+ ++||||+|+|+.++.. ++++||+|.+.. +.+.+
T Consensus 63 v~~~t~~el~~l~~~~~~---------~~~~~~-~~IptL~evl~~~~~~---~~l~iEiK~~~~----------~~v~~ 119 (240)
T d1zcca1 63 VGHMLSSEIDTLDAGGWF---------DDRFKG-AIVPRLDAYLEHLRGR---AGVYIELKYCDP----------AKVAA 119 (240)
T ss_dssp STTSCHHHHTTSCSSTTT---------CGGGTT-CCCCBHHHHHHHHTTT---CEEEEEEEESCH----------HHHHH
T ss_pred HHHhhHHHHHHhhccCcC---------ccccCC-CcCChHHHhhhccccc---ceeEEEEccCcc----------hhhhH
Confidence 999999999999998654 234554 8999999999999865 589999997542 46788
Q ss_pred HHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHH
Q 005970 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQ 646 (667)
Q Consensus 568 ~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~ 646 (667)
+++++++. ++++++||+++.+.+++++ |+++++++++.... .........+ . .+........+++
T Consensus 120 l~~~~~~~----~~v~~~Sf~~~~l~~~~~~~P~~~~~~~~~~~~~----~~~~~~~~~~-----~-~~~~~~~~~~~~~ 185 (240)
T d1zcca1 120 LVRHLGMV----RDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKS----PSLVGAVHHA-----S-IIEITPAQMRRPG 185 (240)
T ss_dssp HHHHHTCS----TTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSS----THHHHHTTCC-----S-EEEECHHHHHSHH
T ss_pred HHHHHHhh----cccccccccHHHHHHHHHhhhccceEEeeccccc----chhHHHHhcc-----c-ccccchhhhCCHH
Confidence 88998887 7999999999999999999 99999998763211 1111111111 1 1111111123468
Q ss_pred HHHHHHHcCCcEEEEeccCC
Q 005970 647 LWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 647 ~v~~ah~~Gl~V~vWTVn~e 666 (667)
+|+.+|++|++|++||+||+
T Consensus 186 ~v~~~~~~Gl~v~~wTvnd~ 205 (240)
T d1zcca1 186 IIEASRKAGLEIMVYYGGDD 205 (240)
T ss_dssp HHHHHHHHTCEEEEECCCCC
T ss_pred HHHHHHHCCCEEEEEccCCH
Confidence 99999999999999999974
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.4e-39 Score=317.37 Aligned_cols=213 Identities=15% Similarity=0.054 Sum_probs=164.3
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCCcccccccccccccccccccCCCCCCc
Q 005970 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (667)
Q Consensus 92 ~~iiaHRG~~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (667)
|+||||||+++.+||||++||+.|++.|++ +||+|||+||||++||+||.+++|+
T Consensus 1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~--~iE~DV~~TkDg~~vv~HD~~~~r~----------------------- 55 (217)
T d1vd6a1 1 PLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTPLG----------------------- 55 (217)
T ss_dssp CEEEEETSCTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSCSEETTE-----------------------
T ss_pred CeEEECCCCCCCCCchhHHHHHHHHHcCCC--EEEEEEEEecCCCEEEecccccCcc-----------------------
Confidence 799999999999999999999999999999 9999999999999999999998875
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCCccCCHHHHHHhhC---CCceEEeccCchhhhhcCCcHHHHHHHHHhhc
Q 005970 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK---PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (667)
Q Consensus 172 ~~v~d~t~~el~~l~~~~~~~~~~~~~~~~~~~iptL~e~l~~~~---~~~~~ieiK~~~~~~~~~~~~~~~l~~~l~~~ 248 (667)
.++++||+||+.+. .++|||+|++++++ +..+++|+|...... ..+...+.+.++..
T Consensus 56 -~i~~~~~~el~~~~----------------~~iptl~e~l~~~~~~~~~~~~ie~K~~~~~~---~~~~~~l~~~~~~~ 115 (217)
T d1vd6a1 56 -PVFQVDYADLKAQE----------------PDLPRLEEVLALKEAFPQAVFNVELKSFPGLG---EEAARRLAALLRGR 115 (217)
T ss_dssp -EGGGSCHHHHHHHS----------------TTCCBHHHHHGGGGTCTTCEEEEEECCCTTSH---HHHHHHHHHHTTTC
T ss_pred -cccchhHHHHhhhh----------------ccCCCHHHHHHHHHhCCCceeeeeeccCcchh---HHHHHHHHHHhhcc
Confidence 35688999997432 48999999999885 356789999542211 13455566666666
Q ss_pred CCceEecCCHHHHHHHHhhhCCCCCceEEEeccCCccCCCCCcchhHHhhcHHHHHhhcceecCCCccccccCCCCCCCC
Q 005970 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (667)
Q Consensus 249 ~~~~i~SFd~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~~~~~~~~~~l~~ 328 (667)
...+++||++..+.++++.. | +.++.+.. ... +..+. + ...+..+.+++.. .
T Consensus 116 ~~v~~~Sf~~~~l~~~~~~~-p-~~~~~~l~-~~~---------~~~~~---~--~~~~~~i~~~~~~-----------~ 167 (217)
T d1vd6a1 116 EGVWVSSFDPLALLALRKAA-P-GLPLGFLM-AED---------HSALL---P--CLGVEAVHPHHAL-----------V 167 (217)
T ss_dssp SSEEEEESCHHHHHHHHHHC-T-TSCEEEEE-SSC---------CGGGG---G--GSCCSEEEEBGGG-----------C
T ss_pred ceEEEeeccHHHHHHHHHHh-c-cCceeeec-ccc---------ccchh---h--hccceEEcchHhH-----------H
Confidence 66799999999999999985 3 67777633 211 11110 0 0124444443322 2
Q ss_pred ChHHHHHHHHcCCeEEEEeccCCCCcccCCCCChHHHHHHHHhCCCcccceEecCCCCCchhhh
Q 005970 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (667)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~e~~~li~~G~~gVDGIiTD~P~~~~~~l 392 (667)
++++|+.+|++|++|++||||++ +++++++++| ||||+||+|+++.+++
T Consensus 168 ~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---vdgI~TD~P~~l~~l~ 216 (217)
T d1vd6a1 168 TEEAVAGWRKRGLFVVAWTVNEE------------GEARRLLALG---LDGLIGDRPEVLLPLG 216 (217)
T ss_dssp CHHHHHHHHHTTCEEEEECCCCH------------HHHHHHHHTT---CSEEEESCHHHHTTSC
T ss_pred HHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhCC---CCEEEECCHHHHhhcc
Confidence 47799999999999999999753 7899999888 9999999999877653
|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-38 Score=332.83 Aligned_cols=251 Identities=20% Similarity=0.223 Sum_probs=181.2
Q ss_pred ceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCc
Q 005970 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (667)
Q Consensus 407 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~ 486 (667)
+++||||||+++.+||||++||++|++.|||+||||||+||||+|||+||.+|+|+||+.... .. .....+.+.
T Consensus 2 ~~liIaHRG~~~~~PENTl~af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~-~~-----~~~~~~~~~ 75 (328)
T d1ydya1 2 EKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRF-PD-----RARKDGRYY 75 (328)
T ss_dssp CCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBCTTTBSHHHHS-TT-----CCCTTSCCB
T ss_pred CCEEEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeEccCCcEEEECCchhhcccCCCCCc-cc-----ccccCCCce
Confidence 579999999999999999999999999999999999999999999999999999999854321 11 111124554
Q ss_pred ccccCCHHHHcccCCCccCCccc-cc----ccCCCCCCCCccccCHHHHHHHHHhcC----CcceEEEEeecchhhhhhh
Q 005970 487 FSFSLIWDEIQTLIPQISNPYFK-FK----LFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQ 557 (667)
Q Consensus 487 ~i~d~t~~EL~~L~~~~~~p~~~-~~----~~~~~~~~~~~~iPtL~EvL~~~~~~~----~~~~l~iEiK~~~~~~~~~ 557 (667)
|.++|++||++|+++.++.-.. .. ..+.+.+.++++||||+|+++.+++.. ..+.+++|||.+.... ..
T Consensus 76 -v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~~-~~ 153 (328)
T d1ydya1 76 -AIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHH-QE 153 (328)
T ss_dssp -GGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHHH-HT
T ss_pred -eeecchhhhhccccccccccccccccccccccccccCCCcccCcHHHHHHHHHHHhhhcCCCceeeeccCCcchhh-hc
Confidence 9999999999999885431100 00 012233344589999999999997521 1257999999877654 35
Q ss_pred cccHHHHHHHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhc--c----CCcEEEEeccc------------------hh-
Q 005970 558 GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T----SYELVYKVKEN------------------IR- 612 (667)
Q Consensus 558 ~~~~~~~v~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~--p----~~~~~~L~~~~------------------~~- 612 (667)
+...++.+..++++++..... ++++++||++++|+.+++. | .++++.++... +.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (328)
T d1ydya1 154 GKDIAAKTLEVLKKYGYTGKD-DKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDW 232 (328)
T ss_dssp TCCHHHHHHHHHHHTTCCSTT-SSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECCCGG
T ss_pred chhhHHHHHHHHHHhcccCCC-ceEEEEecCHHHHHHHHHHcCcccccccceeeeecccccchhccccccccccccchhh
Confidence 567889999999998765332 6899999999999999864 3 44555554321 00
Q ss_pred hhhHHHHHHHHHhhhhcCCC-eeEEeCC---CCCccHHHHHHHHHcCCcEEEEeccCC
Q 005970 613 DALNQTIEDIKKFADSVVLT-MSLYLKR---GTSSQTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 613 ~~~~~~l~~~~~~a~~i~~~-~~i~~~~---~~~~~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
...+..+..+..++..+++. ..+.+.. ....++.+|+.+|++|+.|++||||++
T Consensus 233 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~ 290 (328)
T d1ydya1 233 MFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSD 290 (328)
T ss_dssp GGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTT
T ss_pred hcChhhHHHHHhhCCeeecchhhcccccccccccCCHHHHHHHHHCCCEEEEEccCCh
Confidence 12234556666666665544 2222211 123456899999999999999999985
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.2e-38 Score=314.36 Aligned_cols=197 Identities=18% Similarity=0.172 Sum_probs=151.7
Q ss_pred CceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCC
Q 005970 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (667)
Q Consensus 406 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g 485 (667)
.+|+||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 3 ~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~------------------~~~ 64 (226)
T d1o1za_ 3 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFG------------------LDV 64 (226)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHC------------------EEE
T ss_pred CCCEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEccCCCEEeeccceeeeeec------------------ccc
Confidence 56899999999999999999999999999999999999999999999999999999999 667
Q ss_pred cccccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHH
Q 005970 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (667)
Q Consensus 486 ~~i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (667)
. |.++||+||++|+. ++||||+|+|+.+++. +.++||||.+. .++.+
T Consensus 65 ~-i~~~t~~el~~l~~--------------------~~iptL~evl~~~~~~---~~l~iEiK~~~---------~~~~~ 111 (226)
T d1o1za_ 65 K-IRDATVSELKELTD--------------------GKITTLKEVFENVSDD---KIINIEIKERE---------AADAV 111 (226)
T ss_dssp E-GGGSCHHHHHHHTT--------------------TCCCBHHHHHHHSCTT---SEEEEEECCGG---------GHHHH
T ss_pred e-eeecchhhhhhhhh--------------------hcchhHHHHHHHhhcc---cccchhhcccc---------ccchh
Confidence 5 99999999999863 4799999999999765 47999999653 35667
Q ss_pred HHHHHhcCCCCCCCceEEEEeCCHHHHHHHHhccCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCC--CCc
Q 005970 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRG--TSS 643 (667)
Q Consensus 566 ~~~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~--~~~ 643 (667)
+++++++ ++++++||+++.|+++. |.+++++++...... ........+...++.....+... ...
T Consensus 112 ~~~~~~~-------~~vi~~SF~~~~l~~~~--~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (226)
T d1o1za_ 112 LEISKKR-------KNLIFSSFDLDLLDEKF--KGTKYGYLIDEENYG----SIENFVERVEKERPYSLHVPYQAFELEY 178 (226)
T ss_dssp HHHHTTC-------CSEEEEESCHHHHHHHC--TTSCEEEECCTTTTC----SHHHHHHHHHHHCCSEEEEEGGGGGSHH
T ss_pred hhhhhhc-------cceeccccchHHHHHHH--hccceeeEecccccc----hhHHHHHhhhhcccccccCchhhhhhhh
Confidence 7776653 58999999998765422 888899887542110 11111222222233211112111 123
Q ss_pred cHHHHHHHHHcCCcEEEEeccCC
Q 005970 644 QTQLWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 644 ~~~~v~~ah~~Gl~V~vWTVn~e 666 (667)
++++|+.+|++|++|++||||++
T Consensus 179 ~~~~v~~~~~~g~~v~~wTVN~~ 201 (226)
T d1o1za_ 179 AVEVLRSFRKKGIVIFVWTLNDP 201 (226)
T ss_dssp HHHHHHHHHHTTCEEEEESCCCH
T ss_pred hHHHHHHHHHCCCEEEEECCChH
Confidence 46899999999999999999974
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.5e-36 Score=297.51 Aligned_cols=189 Identities=13% Similarity=0.085 Sum_probs=149.4
Q ss_pred eeEEEecCCCCCCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCcccccccCCCCccCCccccccccccCCCcc
Q 005970 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (667)
Q Consensus 408 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~r~t~v~~~~~~~~~~~~~~~~~~~g~~ 487 (667)
|+||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.++.|++
T Consensus 1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~~iE~DV~~TkDg~~vv~HD~~~~r~~------------------------ 56 (217)
T d1vd6a1 1 PLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGP------------------------ 56 (217)
T ss_dssp CEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEETTEE------------------------
T ss_pred CeEEECCCCCCCCCchhHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccCccc------------------------
Confidence 78999999999999999999999999999999999999999999999999998864
Q ss_pred cccCCHHHHcccCCCccCCcccccccCCCCCCCCccccCHHHHHHHHHhcCCcceEEEEeecchhhhhhhcccHHHHHHH
Q 005970 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (667)
Q Consensus 488 i~d~t~~EL~~L~~~~~~p~~~~~~~~~~~~~~~~~iPtL~EvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (667)
+.++|++||+.+. +++|||+|++++++..+. +.+++|+|..... ....+..
T Consensus 57 i~~~~~~el~~~~---------------------~~iptl~e~l~~~~~~~~-~~~~ie~K~~~~~-------~~~~~~~ 107 (217)
T d1vd6a1 57 VFQVDYADLKAQE---------------------PDLPRLEEVLALKEAFPQ-AVFNVELKSFPGL-------GEEAARR 107 (217)
T ss_dssp GGGSCHHHHHHHS---------------------TTCCBHHHHHGGGGTCTT-CEEEEEECCCTTS-------HHHHHHH
T ss_pred ccchhHHHHhhhh---------------------ccCCCHHHHHHHHHhCCC-ceeeeeeccCcch-------hHHHHHH
Confidence 6789999998632 579999999999987633 4788999965431 1233444
Q ss_pred HHHhcCCCCCCCceEEEEeCCHHHHHHHHhc-cCCcEEEEeccchhhhhHHHHHHHHHhhhhcCCCeeEEeCCCCCccHH
Q 005970 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLTMSLYLKRGTSSQTQ 646 (667)
Q Consensus 568 ~l~~~~~~~~~~~~v~i~SFd~~~L~~~~~~-p~~~~~~L~~~~~~~~~~~~l~~~~~~a~~i~~~~~i~~~~~~~~~~~ 646 (667)
+++.++.. ++++++||++..+.+++++ |++++++++....... ....++. .+.+.. ...+++
T Consensus 108 l~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~-----------~~~~~~~-~i~~~~-~~~~~~ 170 (217)
T d1vd6a1 108 LAALLRGR----EGVWVSSFDPLALLALRKAAPGLPLGFLMAEDHSAL-----------LPCLGVE-AVHPHH-ALVTEE 170 (217)
T ss_dssp HHHHTTTC----SSEEEEESCHHHHHHHHHHCTTSCEEEEESSCCGGG-----------GGGSCCS-EEEEBG-GGCCHH
T ss_pred HHHHhhcc----ceEEEeeccHHHHHHHHHHhccCceeeeccccccch-----------hhhccce-EEcchH-hHHHHH
Confidence 45555544 6899999999999999999 9999999987643221 1222332 222211 123568
Q ss_pred HHHHHHHcCCcEEEEeccCC
Q 005970 647 LWRSTHITRELVLMELLQNS 666 (667)
Q Consensus 647 ~v~~ah~~Gl~V~vWTVn~e 666 (667)
+|+.+|++|++|++||||++
T Consensus 171 ~v~~~~~~g~~v~~wTvn~~ 190 (217)
T d1vd6a1 171 AVAGWRKRGLFVVAWTVNEE 190 (217)
T ss_dssp HHHHHHHTTCEEEEECCCCH
T ss_pred HHHHHHHCCCEEEEECCCCH
Confidence 99999999999999999974
|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C isozyme D1 (PLC-D1) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.61 E-value=0.0073 Score=60.77 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=43.2
Q ss_pred eeEEEecCCCC---CCCchhHHHHHHHHHCCCCeEEcceeeecCCeEEEeccCccc
Q 005970 408 LLVISKNGASG---DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (667)
Q Consensus 408 ~~iiaHRG~~~---~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~L~ 460 (667)
.+--+|+-+-. ..-.-++.++..|+..||..||+||+--.||+|||+|..++.
T Consensus 8 fI~SShNtyl~g~Ql~~~ss~~~~~~~l~~G~R~ielD~w~g~d~ePvV~HG~t~t 63 (327)
T d1qasa3 8 LVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFT 63 (327)
T ss_dssp EEEEESSTTBSSCSSSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEESCTTSCC
T ss_pred eeeccccccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCccc
Confidence 45567776432 345668999999999999999999998889999999997753
|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.015 Score=58.78 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=40.2
Q ss_pred eEEEecCCC---CCCCchhHHHHHHHHHCCCCeEEcceee--ecCCeEEEeccCccc
Q 005970 409 LVISKNGAS---GDYPSCTNLAYQKAISDGVDFIDCPVQM--SKDGVPFCLSFINLI 460 (667)
Q Consensus 409 ~iiaHRG~~---~~~PENTl~Af~~A~~~Gad~iE~DV~l--TkDg~~Vv~HD~~L~ 460 (667)
+--+|+-+- -..-.-++.+|..|+..||.+||+||+= ++||+|||.|..++.
T Consensus 12 I~SShNtyl~g~q~~~~~s~~~~~~~l~~G~R~~eldi~dG~~~d~~Pvv~hg~t~t 68 (349)
T d2zkmx4 12 INSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMT 68 (349)
T ss_dssp ECBBSSTTBSSCSSSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTTSSC
T ss_pred eeccccccccCCcCCCcccHHHHHHHHHhCCcEEEEEecCCCCCCCCcEEeeCCeec
Confidence 334566532 1234567999999999999999999993 578999999997763
|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C isozyme D1 (PLC-D1) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.67 E-value=0.054 Score=54.11 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=42.8
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeEecCCeEEEccCCCC
Q 005970 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (667)
Q Consensus 93 ~iiaHRG~---~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~lTkDg~~vv~HD~~l 145 (667)
+-.+|+-+ .-..-.-++.||..|+..|+. .||+||+--.||.|||+|..++
T Consensus 9 I~SShNtyl~g~Ql~~~ss~~~~~~~l~~G~R--~ielD~w~g~d~ePvV~HG~t~ 62 (327)
T d1qasa3 9 VSSSHNTYLLEDQLTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 62 (327)
T ss_dssp EEEESSTTBSSCSSSCCBCHHHHHHHHHTTCC--EEEEEEECCGGGCCEESCTTSC
T ss_pred eeccccccccCCcccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCeEEeeCCcc
Confidence 45678863 334567789999999999999 9999999889999999998764
|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.12 Score=52.00 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=38.8
Q ss_pred EEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeE--ecCCeEEEccCCCC
Q 005970 95 VARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQL--TKDEAGICFPDLKL 145 (667)
Q Consensus 95 iaHRG~---~~~~pENTl~a~~~A~~~g~d~~~vE~Dv~l--TkDg~~vv~HD~~l 145 (667)
.+|+-+ .-..-.-++.||..|+..||. .||+||+= ++||+|||.|..++
T Consensus 14 SShNtyl~g~q~~~~~s~~~~~~~l~~G~R--~~eldi~dG~~~d~~Pvv~hg~t~ 67 (349)
T d2zkmx4 14 SSHNTYLTAGQFSGLSSAEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 67 (349)
T ss_dssp BBSSTTBSSCSSSSCBCTHHHHHHHHTTCC--EEEEEEECCCTTCCSCEECCTTSS
T ss_pred ccccccccCCcCCCcccHHHHHHHHHhCCc--EEEEEecCCCCCCCCcEEeeCCee
Confidence 355542 223456689999999999999 99999994 57899999998664
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=83.63 E-value=1.6 Score=41.00 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=61.7
Q ss_pred hHHHHHHHHcCCeEEEEeccCCCCcccCCCCCh--HH-HHHHHHhCCCcccceEecCCCCCchhhhhhhhhcCcCcccCC
Q 005970 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDP--LT-EYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSA 406 (667)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~--~~-e~~~li~~G~~gVDGIiTD~P~~~~~~l~~~~~~~~~~~~~~ 406 (667)
..+++.+++.|+.+++|.+....... ...++ .. -.....+ +|+|-|=|.+|.....+.+.... . ..
T Consensus 126 ~~v~~e~~~~glP~v~e~~p~g~~~~--~~~~~~~v~~aaria~E---lGaDivK~~~p~~~~~~~~~v~~-----a-~~ 194 (251)
T d1ojxa_ 126 ARIKRDAVKFDLPLVVWSYPRGGKVV--NETAPEIVAYAARIALE---LGADAMKIKYTGDPKTFSWAVKV-----A-GK 194 (251)
T ss_dssp HHHHHHHHHHTCCEEEEECCCSTTCC--CTTCHHHHHHHHHHHHH---HTCSEEEECCCSSHHHHHHHHHH-----T-TT
T ss_pred HHHHHHHHHcCCeEEEEEeecCCccc--cCCCHHHHHHHHHHHHH---hCCCEEEecCCCcHHHHHHHHHh-----c-CC
Confidence 45899999999999999884221111 11122 11 1233444 45999999999876655543311 0 11
Q ss_pred ceeEEEecCCCCCCCchhHHHHHHHHHCCCCeEE
Q 005970 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440 (667)
Q Consensus 407 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE 440 (667)
.|.+++ -|+.+.-++-++...+.|++.||.++=
T Consensus 195 ~pv~~~-gG~~~~~~~~~l~~~~~a~~~Ga~G~~ 227 (251)
T d1ojxa_ 195 VPVLMS-GGPKTKTEEDFLKQVEGVLEAGALGIA 227 (251)
T ss_dssp SCEEEE-CCSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEe-CCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence 232222 234456778899999999999998873
|