Citrus Sinensis ID: 005976

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660------

MELLQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTKNLVIRASKSAELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISGTLLTQ

ccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccHHHccccccccccccEEccccccccccEEccccEEEEEccccccEEEEEEEcccccccccEEEEEEccccccccccEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEccccccccccEEcccccccccccEccccEEEEEEEccccEEEEEEEcccccccccccEEEEccccccccccEEEEEEcccccccEEEEEEccccccccccccccccEEEcHHHHHEcccccccccccccccccccccEEEEccccccccccccccccHHHccEEEEcHHHHHccccccHcccccHHHHHcHHHHHHHccccEEEEccEEEEcccHHcccccccccccEcEcccccccccccccHHccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccEEEEEcccccEEcEccccccEcccccccccEccccHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccHHHcEEEEEcccccccccEcccccccccHHHHccccHHHHHHHHcccccHHHHHHHHHcccHHHHHHHcccHHHEEEcccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccEcccccEEEEEccccHHHHcc

mellqftsspllhgsskfinspefyksklsnlkkpptttfrccnhpnktshfansKAFENVTKNLVIRASKSAELETavikkpqsqrfqvskgyptpfgatlrdggvnfsIFSSNAVSATLCLITLsdlqenkvteEIALDSFANKTGDVWHVFLKGDfkdmlygykfdgkfspqeghyfdptkivldPYAKAVISraqfgvlgpdencwpqmaclvptpedefdwegdlplkypqrdlIIYEVHVrgftrhessktehpgtylGVVEKLDHLKDLginclelmpchefneleyfsynsvlgdykvnfWGYStinyfspmisyssagirncghDAINEFKLLVREAHKRGIEVVMDVVFNHtvegndkgpilsfrgvdnsvyymlapkgefynysgcgntfncnhpVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRgsslwdsvnvygipiegdllttgtplrspplidlisndpilRGVKLIAEAWdtgglyqvgifphwgiwsewngKYRDIVRQFIKGTDGFAGAFAEclcgspnlyqgggrkpwnsinfvcahdgfsladlvsynqkhnlangednndgethnnswncgqegeFANILVKKLRRRQMRNFFLCLMVsqgvpmismgdeyghtkggnnntychdndvNLCTLLISGTLLTQ

mellqftsspllhgsskfiNSPEFYKSKLSNLKKPPTTTFRCCNHPNKtshfanskafENVTKNLVIRASKSAELETAvikkpqsqrfqvskGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGftrhessktehpgtyLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHtvegndkgpilsfRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLangednndGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISGTLLTQ

**************************************TFRCCNH*****HFANSKAFENVTKNLVIRA********************VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRH******HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQK*****************SWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISGTL***

*******SSPLLHGSS****************************************************************************GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISG*****

MELLQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTKNLVIRASKSAELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFT********HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISGTLLTQ

***********LHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTKNLVIRASKSAELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHN************HNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVNLCTLLISG*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		666	2.2.26 [Sep-21-2011]
O04196		783	Isoamylase 1, chloroplast	yes	no	0.891	0.758	0.778	0.0
Q9M0S5		764	Isoamylase 3, chloroplast	no	no	0.858	0.748	0.482	1e-157
P0A4Y4		721	Glycogen operon protein G	yes	no	0.785	0.725	0.445	1e-127
P0A4Y5		721	Glycogen operon protein G	yes	no	0.785	0.725	0.445	1e-127
Q6CZK1		658	Glycogen debranching enzy	yes	no	0.782	0.791	0.389	1e-105
B7N1M3		657	Glycogen debranching enzy	yes	no	0.785	0.796	0.379	1e-105
Q31VJ2		657	Glycogen debranching enzy	yes	no	0.785	0.796	0.378	1e-105
B7L4W3		657	Glycogen debranching enzy	yes	no	0.785	0.796	0.378	1e-104
B7NE41		657	Glycogen debranching enzy	yes	no	0.785	0.796	0.378	1e-104
P15067		657	Glycogen debranching enzy	N/A	no	0.785	0.796	0.378	1e-104

>sp\|O04196\|ISOA1_ARATH Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1	Back alignment and function desciption

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/597 (77%), Positives = 535/597 (89%), Gaps = 3/597 (0%)

Query: 58  FENVTKNLVIRASKSAELETAVIKKP-QSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNA 116
           F  ++ +   R S  AE   AV++KP +S RF +S G P+PFG T+RD GVNFS++S+N+
Sbjct: 37  FRPISISAKDRRSNEAE-NIAVVEKPLKSDRFFISDGLPSPFGPTVRDDGVNFSVYSTNS 95

Query: 117 VSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQE 176
           VSAT+CLI+LSDL++NKVTEEI LD   N+TG VWHVFL+GDFKDMLYGY+FDGKFSP+E
Sbjct: 96  VSATICLISLSDLRQNKVTEEIQLDPSRNRTGHVWHVFLRGDFKDMLYGYRFDGKFSPEE 155

Query: 177 GHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQ 236
           GHY+D + I+LDPYAKA+ISR +FGVLGPD+NCWPQMAC+VPT E+EFDWEGD+ LK PQ
Sbjct: 156 GHYYDSSNILLDPYAKAIISRDEFGVLGPDDNCWPQMACMVPTREEEFDWEGDMHLKLPQ 215

Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
           +DL+IYE+HVRGFTRHESSK E PGTY GV EKLDHLK+LGINC+ELMPCHEFNELEY+S
Sbjct: 216 KDLVIYEMHVRGFTRHESSKIEFPGTYQGVAEKLDHLKELGINCIELMPCHEFNELEYYS 275

Query: 297 YNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 356
           YN++LGD++VNFWGYSTI +FSPMI Y+SA   N    AINEFK+LV+EAHKRGIEV+MD
Sbjct: 276 YNTILGDHRVNFWGYSTIGFFSPMIRYASASSNNFAGRAINEFKILVKEAHKRGIEVIMD 335

Query: 357 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCL 416
           VV NHT EGN+KGPI SFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI+DCL
Sbjct: 336 VVLNHTAEGNEKGPIFSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFILDCL 395

Query: 417 RYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND 476
           RYWVTEMHVDGFRFDL SIM+R SSLWD+ NVYG  +EGDLLTTGTP+  PP+ID+ISND
Sbjct: 396 RYWVTEMHVDGFRFDLGSIMSRSSSLWDAANVYGADVEGDLLTTGTPISCPPVIDMISND 455

Query: 477 PILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLC 536
           PILRGVKLIAEAWD GGLYQVG+FPHWGIWSEWNGK+RD+VRQFIKGTDGF+GAFAECLC
Sbjct: 456 PILRGVKLIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVRQFIKGTDGFSGAFAECLC 515

Query: 537 GSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQ 596
           GSPNLYQ GGRKPW+SINF+CAHDGF+LADLV+YN K+NLANGE+NNDGE HN SWNCG+
Sbjct: 516 GSPNLYQ-GGRKPWHSINFICAHDGFTLADLVTYNNKNNLANGEENNDGENHNYSWNCGE 574

Query: 597 EGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVN 653
           EG+FA+I VK+LR+RQMRNFF+ LMVSQGVPMI MGDEYGHTKGGNNNTYCHDN +N
Sbjct: 575 EGDFASISVKRLRKRQMRNFFVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYMN 631

Involved in the trimming of pre-amylopectin chains. Accelerates the crystallization of nascent amylopectin molecules during starch synthesis. ISA1 and ISA2 work exclusively together as a multimeric holoenzyme. ISA1-ISA2 removes preferentially branches that are very close to other branches.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 6EC: 8

>sp\|Q9M0S5\|ISOA3_ARATH Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2	Back alignment and function description

>sp\|P0A4Y4\|GLGX_MYCTU Glycogen operon protein GlgX homolog OS=Mycobacterium tuberculosis GN=glgX PE=3 SV=1	Back alignment and function description

>sp\|P0A4Y5\|GLGX_MYCBO Glycogen operon protein GlgX homolog OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=glgX PE=3 SV=1	Back alignment and function description

>sp\|Q6CZK1\|GLGX_ERWCT Glycogen debranching enzyme OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=glgX PE=3 SV=1	Back alignment and function description

>sp\|B7N1M3\|GLGX_ECO81 Glycogen debranching enzyme OS=Escherichia coli O81 (strain ED1a) GN=glgX PE=3 SV=1	Back alignment and function description

>sp\|Q31VJ2\|GLGX_SHIBS Glycogen debranching enzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=glgX PE=3 SV=1	Back alignment and function description

>sp\|B7L4W3\|GLGX_ECO55 Glycogen debranching enzyme OS=Escherichia coli (strain 55989 / EAEC) GN=glgX PE=3 SV=1	Back alignment and function description

>sp\|B7NE41\|GLGX_ECOLU Glycogen debranching enzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glgX PE=3 SV=1	Back alignment and function description

>sp\|P15067\|GLGX_ECOLI Glycogen debranching enzyme OS=Escherichia coli (strain K12) GN=glgX PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		666
224142633		801	predicted protein [Populus trichocarpa]	0.953	0.792	0.777	0.0
224087162		826	predicted protein [Populus trichocarpa]	0.933	0.753	0.785	0.0
255578059		795	isoamylase, putative [Ricinus communis]	0.885	0.742	0.824	0.0
359484905		748	PREDICTED: isoamylase 1, chloroplastic-l	0.888	0.791	0.815	0.0
139867053		791	isoamylase-type starch-debranching enzym	0.896	0.754	0.811	0.0
296090473		809	unnamed protein product [Vitis vinifera]	0.938	0.772	0.772	0.0
356527718		796	PREDICTED: isoamylase 1, chloroplastic-l	0.881	0.737	0.816	0.0
449463916		810	PREDICTED: isoamylase 1, chloroplastic-l	0.876	0.720	0.804	0.0
449507370		810	PREDICTED: isoamylase 1, chloroplastic-l	0.876	0.720	0.804	0.0
27728145		793	isoamylase isoform 1 [Solanum tuberosum]	0.885	0.744	0.791	0.0

>gi\|224142633\|ref\|XP_002324659.1\| predicted protein [Populus trichocarpa] gi\|222866093\|gb\|EEF03224.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1070 bits (2766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/648 (77%), Positives = 568/648 (87%), Gaps = 13/648 (2%)

Query: 11  LLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFAN--SKAFENVTKNLVIR 68
           LLH +S  ++  +F    +S  +  P     C    N TS+  N  S  F N T ++ I+
Sbjct: 3   LLHSTSHSVHVLKF----ISQFRSTPKF---CLLKRNVTSNLENFGSNLFSNSTASISIK 55

Query: 69  ASKSAELETAVI---KKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLIT 125
           A++   ++TAV+   + P+ ++FQV +G+P+PFGAT+RDGGVNF+IFS+NAVSATLCLI+
Sbjct: 56  AARDG-VDTAVVVEEEGPKLRKFQVFEGHPSPFGATVRDGGVNFAIFSANAVSATLCLIS 114

Query: 126 LSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKI 185
           LSDL EN+VTE+  LD   NKTGDVWHV LKGDFKDMLYGYKFDG FSP+EGHY+DP++I
Sbjct: 115 LSDLPENRVTEQFFLDPLTNKTGDVWHVHLKGDFKDMLYGYKFDGSFSPEEGHYYDPSQI 174

Query: 186 VLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVH 245
           VLDPYAKAVISR  FGVLG D+NCWPQMAC++PT +D+FDWEGD  LKYPQRDLI+YE+H
Sbjct: 175 VLDPYAKAVISRGDFGVLGSDDNCWPQMACMIPTADDKFDWEGDSLLKYPQRDLILYEMH 234

Query: 246 VRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYK 305
           VRGFT+HESS+TE PGTYLGVVEKL HLK+LG+NC+ELMPCHEFNELEY+ YNSV GDYK
Sbjct: 235 VRGFTQHESSRTEFPGTYLGVVEKLGHLKELGVNCIELMPCHEFNELEYYDYNSVFGDYK 294

Query: 306 VNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEG 365
           VNFWGYST+NYFSPM  YSSAG  NCGHDAINEFKLLVREAHKRGIEV MDVVFNHT EG
Sbjct: 295 VNFWGYSTVNYFSPMTRYSSAGTLNCGHDAINEFKLLVREAHKRGIEVFMDVVFNHTAEG 354

Query: 366 NDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHV 425
           N++GPILSF+GVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI+DCLRYWV EMHV
Sbjct: 355 NERGPILSFKGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFILDCLRYWVIEMHV 414

Query: 426 DGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLI 485
           DGFRFDLASIMTR SSLWD+VNV+G PIEGDL+TTGTPL SPPLI+++SNDPILR VKLI
Sbjct: 415 DGFRFDLASIMTRSSSLWDAVNVFGSPIEGDLVTTGTPLGSPPLIEMMSNDPILRDVKLI 474

Query: 486 AEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGG 545
           AEAWD GGLYQVG+FPHW IWSEWNGKYRDIVRQFIKGTDGF+GAFAECLCGSP LYQ G
Sbjct: 475 AEAWDAGGLYQVGMFPHWHIWSEWNGKYRDIVRQFIKGTDGFSGAFAECLCGSPGLYQEG 534

Query: 546 GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILV 605
           GRKPWNSINFVCAHDGF+LADLV+YN+KHNLANGEDNNDGE HNNSWNCGQEGE A+I V
Sbjct: 535 GRKPWNSINFVCAHDGFTLADLVTYNEKHNLANGEDNNDGENHNNSWNCGQEGELASISV 594

Query: 606 KKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDVN 653
           KKLR+RQMRNFFLCLMVSQGVPMI MGDEYGHTKGGNNNTYCHDN +N
Sbjct: 595 KKLRKRQMRNFFLCLMVSQGVPMIHMGDEYGHTKGGNNNTYCHDNYIN 642

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224087162\|ref\|XP_002308090.1\| predicted protein [Populus trichocarpa] gi\|222854066\|gb\|EEE91613.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255578059\|ref\|XP_002529900.1\| isoamylase, putative [Ricinus communis] gi\|223530627\|gb\|EEF32503.1\| isoamylase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359484905\|ref\|XP_002265964.2\| PREDICTED: isoamylase 1, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|139867053\|dbj\|BAF52941.1\| isoamylase-type starch-debranching enzyme 1 [Phaseolus vulgaris]	Back alignment and taxonomy information

>gi\|296090473\|emb\|CBI40669.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356527718\|ref\|XP_003532455.1\| PREDICTED: isoamylase 1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|449463916\|ref\|XP_004149676.1\| PREDICTED: isoamylase 1, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449507370\|ref\|XP_004163012.1\| PREDICTED: isoamylase 1, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|27728145\|gb\|AAN15317.1\| isoamylase isoform 1 [Solanum tuberosum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		666
TAIR\|locus:2061216		783	ISA1 "isoamylase 1" [Arabidops	0.912	0.776	0.766	1e-274
TAIR\|locus:2122343		764	ISA3 "isoamylase 3" [Arabidops	0.567	0.494	0.444	1.2e-149
UNIPROTKB\|Q8EGU6		750	glgX "Glycogen isoamylase GlgX	0.515	0.457	0.398	2.4e-108
TIGR_CMR\|SO_1495		750	SO_1495 "glycogen operon prote	0.515	0.457	0.398	2.4e-108
UNIPROTKB\|P15067		657	glgX [Escherichia coli K-12 (t	0.496	0.503	0.366	2.5e-100
UNIPROTKB\|Q9KKS1		656	VC_A1029 "Glycogen operon prot	0.267	0.271	0.491	2.7e-78
TIGR_CMR\|VC_A1029		656	VC_A1029 "glycogen operon prot	0.267	0.271	0.491	2.7e-78
TAIR\|locus:2014500		882	DBE1 "debranching enzyme 1" [A	0.288	0.217	0.365	4.9e-68
UNIPROTKB\|Q81KP1		713	BAS4597 "Putative pullulanase"	0.387	0.361	0.308	6.7e-28
TIGR_CMR\|BA_4953		713	BA_4953 "pullulanase, putative	0.387	0.361	0.308	6.7e-28

TAIR\|locus:2061216 ISA1 "isoamylase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2641 (934.7 bits), Expect = 1.0e-274, P = 1.0e-274
 Identities = 469/612 (76%), Positives = 539/612 (88%)

Query:    44 NHPNKTSHFANSKA-FENVTKNLVIRASKSAELETAVIKKP-QSQRFQVSKGYPTPFGAT 101
             NH        N K  F  ++ +   R S  AE   AV++KP +S RF +S G P+PFG T
Sbjct:    22 NHTFPKISAPNFKPLFRPISISAKDRRSNEAE-NIAVVEKPLKSDRFFISDGLPSPFGPT 80

Query:   102 LRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKD 161
             +RD GVNFS++S+N+VSAT+CLI+LSDL++NKVTEEI LD   N+TG VWHVFL+GDFKD
Sbjct:    81 VRDDGVNFSVYSTNSVSATICLISLSDLRQNKVTEEIQLDPSRNRTGHVWHVFLRGDFKD 140

Query:   162 MLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE 221
             MLYGY+FDGKFSP+EGHY+D + I+LDPYAKA+ISR +FGVLGPD+NCWPQMAC+VPT E
Sbjct:   141 MLYGYRFDGKFSPEEGHYYDSSNILLDPYAKAIISRDEFGVLGPDDNCWPQMACMVPTRE 200

Query:   222 DEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCL 281
             +EFDWEGD+ LK PQ+DL+IYE+HVRGFTRHESSK E PGTY GV EKLDHLK+LGINC+
Sbjct:   201 EEFDWEGDMHLKLPQKDLVIYEMHVRGFTRHESSKIEFPGTYQGVAEKLDHLKELGINCI 260

Query:   282 ELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341
             ELMPCHEFNELEY+SYN++LGD++VNFWGYSTI +FSPMI Y+SA   N    AINEFK+
Sbjct:   261 ELMPCHEFNELEYYSYNTILGDHRVNFWGYSTIGFFSPMIRYASASSNNFAGRAINEFKI 320

Query:   342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTF 401
             LV+EAHKRGIEV+MDVV NHT EGN+KGPI SFRGVDNSVYYMLAPKGEFYNYSGCGNTF
Sbjct:   321 LVKEAHKRGIEVIMDVVLNHTAEGNEKGPIFSFRGVDNSVYYMLAPKGEFYNYSGCGNTF 380

Query:   402 NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTG 461
             NCNHPVVRQFI+DCLRYWVTEMHVDGFRFDL SIM+R SSLWD+ NVYG  +EGDLLTTG
Sbjct:   381 NCNHPVVRQFILDCLRYWVTEMHVDGFRFDLGSIMSRSSSLWDAANVYGADVEGDLLTTG 440

Query:   462 TPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFI 521
             TP+  PP+ID+ISNDPILRGVKLIAEAWD GGLYQVG+FPHWGIWSEWNGK+RD+VRQFI
Sbjct:   441 TPISCPPVIDMISNDPILRGVKLIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVRQFI 500

Query:   522 KGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGED 581
             KGTDGF+GAFAECLCGSPNLYQGG RKPW+SINF+CAHDGF+LADLV+YN K+NLANGE+
Sbjct:   501 KGTDGFSGAFAECLCGSPNLYQGG-RKPWHSINFICAHDGFTLADLVTYNNKNNLANGEE 559

Query:   582 NNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG 641
             NNDGE HN SWNCG+EG+FA+I VK+LR+RQMRNFF+ LMVSQGVPMI MGDEYGHTKGG
Sbjct:   560 NNDGENHNYSWNCGEEGDFASISVKRLRKRQMRNFFVSLMVSQGVPMIYMGDEYGHTKGG 619

Query:   642 NNNTYCHDNDVN 653
             NNNTYCHDN +N
Sbjct:   620 NNNTYCHDNYMN 631

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0004556 "alpha-amylase activity" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0043169 "cation binding" evidence=IEA

GO:0010021 "amylopectin biosynthetic process" evidence=IMP

GO:0010368 "chloroplast isoamylase complex" evidence=IDA

GO:0019156 "isoamylase activity" evidence=IDA;IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR\|locus:2122343 ISA3 "isoamylase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8EGU6 glgX "Glycogen isoamylase GlgX" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_1495 SO_1495 "glycogen operon protein" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P15067 glgX [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KKS1 VC_A1029 "Glycogen operon protein GlgX" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_A1029 VC_A1029 "glycogen operon protein GlgX" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TAIR\|locus:2014500 DBE1 "debranching enzyme 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81KP1 BAS4597 "Putative pullulanase" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4953 BA_4953 "pullulanase, putative" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04196	ISOA1_ARATH	3, ., 2, ., 1, ., 6, 8	0.7788	0.8918	0.7586	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1.68	0.946
3rd Layer	3.2.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		666
cd11326		433	cd11326, AmyAc_Glg_debranch, Alpha amylase catalyt	0.0
COG1523		697	COG1523, PulA, Type II secretory pathway, pullulan	0.0
TIGR02100		688	TIGR02100, glgX_debranch, glycogen debranching enz	0.0
PRK03705		658	PRK03705, PRK03705, glycogen debranching enzyme; P	1e-166
PRK14510		1221	PRK14510, PRK14510, putative bifunctional 4-alpha-	1e-140
cd11346		347	cd11346, AmyAc_plant_IsoA, Alpha amylase catalytic	1e-82
cd11341		406	cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase	4e-71
TIGR02104		605	TIGR02104, pulA_typeI, pullulanase, type I	3e-57
cd11325		436	cd11325, AmyAc_GTHase, Alpha amylase catalytic dom	7e-46
cd11350		390	cd11350, AmyAc_4, Alpha amylase catalytic domain f	2e-43
cd00551		260	cd00551, AmyAc_family, Alpha amylase catalytic dom	2e-38
cd02856		130	cd02856, E_set_GDE_Isoamylase_N, N-terminal Early	1e-36
TIGR02102		1111	TIGR02102, pullulan_Gpos, pullulanase, extracellul	1e-34
COG0296		628	COG0296, GlgB, 1,4-alpha-glucan branching enzyme [	4e-34
TIGR02402		544	TIGR02402, trehalose_TreZ, malto-oligosyltrehalose	1e-30
cd11313		336	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly	2e-28
PLN02877		970	PLN02877, PLN02877, alpha-amylase/limit dextrinase	5e-23
TIGR02103		898	TIGR02103, pullul_strch, alpha-1,6-glucosidases, p	9e-22
cd11338		389	cd11338, AmyAc_CMD, Alpha amylase catalytic domain	3e-21
cd11316		403	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic	2e-20
cd11322		402	cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom	8e-20
cd11334		447	cd11334, AmyAc_TreS, Alpha amylase catalytic domai	2e-19
cd11321		406	cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic	1e-17
COG0366		505	COG0366, AmyA, Glycosidases [Carbohydrate transpor	7e-17
PRK12313		633	PRK12313, PRK12313, glycogen branching enzyme; Pro	4e-16
TIGR02456		539	TIGR02456, treS_nterm, trehalose synthase	4e-16
cd11337		328	cd11337, AmyAc_CMD_like, Alpha amylase catalytic d	2e-13
PLN02447		758	PLN02447, PLN02447, 1,4-alpha-glucan-branching enz	2e-13
pfam02922		83	pfam02922, CBM_48, Carbohydrate-binding module 48	3e-13
smart00642		166	smart00642, Aamy, Alpha-amylase domain	6e-13
pfam00128		314	pfam00128, Alpha-amylase, Alpha amylase, catalytic	7e-13
cd11353		366	cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase cat	7e-13
TIGR02403		543	TIGR02403, trehalose_treC, alpha,alpha-phosphotreh	2e-12
PLN02960		897	PLN02960, PLN02960, alpha-amylase	4e-12
cd11339		344	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal	5e-12
cd11234		101	cd11234, E_set_GDE_N, N-terminal Early set domain	1e-11
cd11333		428	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca	5e-11
cd11332		481	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti	2e-10
cd11340		407	cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal	2e-10
PRK05402		726	PRK05402, PRK05402, glycogen branching enzyme; Pro	4e-10
cd11354		357	cd11354, AmyAc_bac_CMD_like, Alpha amylase catalyt	7e-10
cd11348		429	cd11348, AmyAc_2, Alpha amylase catalytic domain f	1e-09
cd11328		470	cd11328, AmyAc_maltase, Alpha amylase catalytic do	2e-09
PRK10933		551	PRK10933, PRK10933, trehalose-6-phosphate hydrolas	4e-09
cd11331		450	cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly	5e-09
cd11330		472	cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d	6e-09
PRK14705		1224	PRK14705, PRK14705, glycogen branching enzyme; Pro	1e-08
TIGR01515		618	TIGR01515, branching_enzym, alpha-1,4-glucan:alpha	2e-08
cd02860		97	cd02860, E_set_Pullulanase, Early set domain assoc	4e-08
cd11320		389	cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase	6e-08
cd11315		352	cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic	7e-08
PRK09505		683	PRK09505, malS, alpha-amylase; Reviewed	3e-07
cd11324		536	cd11324, AmyAc_Amylosucrase, Alpha amylase catalyt	5e-07
PLN03244		872	PLN03244, PLN03244, alpha-amylase; Provisional	1e-06
cd11359		456	cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom	1e-06
PRK10785		598	PRK10785, PRK10785, maltodextrin glucosidase; Prov	3e-06
cd11352		443	cd11352, AmyAc_5, Alpha amylase catalytic domain f	4e-06
cd11346		347	cd11346, AmyAc_plant_IsoA, Alpha amylase catalytic	9e-06
PRK14706		639	PRK14706, PRK14706, glycogen branching enzyme; Pro	1e-05
PRK12568		730	PRK12568, PRK12568, glycogen branching enzyme; Pro	5e-05
cd11345		326	cd11345, AmyAc_SLC3A2, Alpha amylase catalytic dom	4e-04
cd11314		302	cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase	6e-04
cd11344		355	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic	0.003

>gnl\|CDD\|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes	Back alignment and domain information

 Score =  710 bits (1834), Expect = 0.0
 Identities = 222/435 (51%), Positives = 285/435 (65%), Gaps = 34/435 (7%)

Query: 224 FDWEGDLPLKYPQRDLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE--KLDHLKDLGINC 280
           FDWEGD   + P  D +IYE+HVRGFT+ H     E  GTY G+ E  K+ +LK+LG+  
Sbjct: 1   FDWEGDARPRIPWEDTVIYEMHVRGFTKLHPDVPEELRGTYAGLAEPAKIPYLKELGVTA 60

Query: 281 LELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340
           +EL+P H F++ E+      +     N+WGY+T+N+F+P   Y+S          ++EFK
Sbjct: 61  VELLPVHAFDDEEHL-----VERGLTNYWGYNTLNFFAPDPRYASDD---APGGPVDEFK 112

Query: 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN 399
            +V+  HK GIEV++DVV+NHT EG + GP LSFRG+DN+ YY L P G +Y NY+GCGN
Sbjct: 113 AMVKALHKAGIEVILDVVYNHTAEGGELGPTLSFRGLDNASYYRLDPDGPYYLNYTGCGN 172

Query: 400 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLT 459
           T N NHPVV + I+D LRYWVTEMHVDGFRFDLAS++ R                     
Sbjct: 173 TLNTNHPVVLRLILDSLRYWVTEMHVDGFRFDLASVLGRDPD------------------ 214

Query: 460 TGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGL-YQVGIFPHWGIWSEWNGKYRDIVR 518
            G P  +PPL++ I+ DP+L GVKLIAE WD GG  YQVG FP    W+EWN +YRD VR
Sbjct: 215 -GFPDPNPPLLEAIAQDPVLSGVKLIAEPWDIGGGGYQVGNFPPG--WAEWNDRYRDDVR 271

Query: 519 QFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLAN 578
           +F +G  G  G FA  L GS +L+   GR P  S+NF+ AHDGF+LADLVSYN+KHN AN
Sbjct: 272 RFWRGDGGLVGDFATRLAGSSDLFGHDGRSPSASVNFITAHDGFTLADLVSYNEKHNEAN 331

Query: 579 GEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHT 638
           GE+N DG   N SWNCG EG   +  +  LRRRQMRN    L++SQG PM+  GDE+G T
Sbjct: 332 GENNRDGHNDNLSWNCGVEGPTDDPEILALRRRQMRNLLATLLLSQGTPMLLAGDEFGRT 391

Query: 639 KGGNNNTYCHDNDVN 653
           + GNNN YC DN+++
Sbjct: 392 QQGNNNAYCQDNEIS 406

Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433

>gnl\|CDD\|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX	Back alignment and domain information

>gnl\|CDD\|235152 PRK03705, PRK03705, glycogen debranching enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|237739 PRK14510, PRK14510, putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|200484 cd11346, AmyAc_plant_IsoA, Alpha amylase catalytic domain family found in plant isoamylases	Back alignment and domain information

>gnl\|CDD\|200480 cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins	Back alignment and domain information

>gnl\|CDD\|233730 TIGR02104, pulA_typeI, pullulanase, type I	Back alignment and domain information

>gnl\|CDD\|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase)	Back alignment and domain information

>gnl\|CDD\|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family	Back alignment and domain information

>gnl\|CDD\|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family	Back alignment and domain information

>gnl\|CDD\|199886 cd02856, E_set_GDE_Isoamylase_N, N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)	Back alignment and domain information

>gnl\|CDD\|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive	Back alignment and domain information

>gnl\|CDD\|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase	Back alignment and domain information

>gnl\|CDD\|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	Back alignment and domain information

>gnl\|CDD\|215474 PLN02877, PLN02877, alpha-amylase/limit dextrinase	Back alignment and domain information

>gnl\|CDD\|233729 TIGR02103, pullul_strch, alpha-1,6-glucosidases, pullulanase-type	Back alignment and domain information

>gnl\|CDD\|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	Back alignment and domain information

>gnl\|CDD\|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	Back alignment and domain information

>gnl\|CDD\|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme)	Back alignment and domain information

>gnl\|CDD\|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase	Back alignment and domain information

>gnl\|CDD\|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes	Back alignment and domain information

>gnl\|CDD\|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|233874 TIGR02456, treS_nterm, trehalose synthase	Back alignment and domain information

>gnl\|CDD\|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	Back alignment and domain information

>gnl\|CDD\|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	Back alignment and domain information

>gnl\|CDD\|217288 pfam02922, CBM_48, Carbohydrate-binding module 48 (Isoamylase N-terminal domain)	Back alignment and domain information

>gnl\|CDD\|214758 smart00642, Aamy, Alpha-amylase domain	Back alignment and domain information

>gnl\|CDD\|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain	Back alignment and domain information

>gnl\|CDD\|200490 cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase catalytic domain found in eukaryotic and bacterial cyclomaltodextrinases and related proteins	Back alignment and domain information

>gnl\|CDD\|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase	Back alignment and domain information

>gnl\|CDD\|215519 PLN02960, PLN02960, alpha-amylase	Back alignment and domain information

>gnl\|CDD\|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins	Back alignment and domain information

>gnl\|CDD\|199893 cd11234, E_set_GDE_N, N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme	Back alignment and domain information

>gnl\|CDD\|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	Back alignment and domain information

>gnl\|CDD\|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	Back alignment and domain information

>gnl\|CDD\|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins	Back alignment and domain information

>gnl\|CDD\|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins	Back alignment and domain information

>gnl\|CDD\|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family	Back alignment and domain information

>gnl\|CDD\|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins	Back alignment and domain information

>gnl\|CDD\|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	Back alignment and domain information

>gnl\|CDD\|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	Back alignment and domain information

>gnl\|CDD\|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	Back alignment and domain information

>gnl\|CDD\|199890 cd02860, E_set_Pullulanase, Early set domain associated with the catalytic domain of pullulanase (also called dextrinase and alpha-dextrin endo-1,6-alpha glucosidase)	Back alignment and domain information

>gnl\|CDD\|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins	Back alignment and domain information

>gnl\|CDD\|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	Back alignment and domain information

>gnl\|CDD\|236543 PRK09505, malS, alpha-amylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|200463 cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	Back alignment and domain information

>gnl\|CDD\|178782 PLN03244, PLN03244, alpha-amylase; Provisional	Back alignment and domain information

>gnl\|CDD\|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins	Back alignment and domain information

>gnl\|CDD\|236759 PRK10785, PRK10785, maltodextrin glucosidase; Provisional	Back alignment and domain information

>gnl\|CDD\|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family	Back alignment and domain information

>gnl\|CDD\|200484 cd11346, AmyAc_plant_IsoA, Alpha amylase catalytic domain family found in plant isoamylases	Back alignment and domain information

>gnl\|CDD\|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|200483 cd11345, AmyAc_SLC3A2, Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins	Back alignment and domain information

>gnl\|CDD\|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	Back alignment and domain information

>gnl\|CDD\|200482 cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		666
PRK03705		658	glycogen debranching enzyme; Provisional	100.0
TIGR02100		688	glgX_debranch glycogen debranching enzyme GlgX. Th	100.0
COG1523		697	PulA Type II secretory pathway, pullulanase PulA a	100.0
PRK14510		1221	putative bifunctional 4-alpha-glucanotransferase/g	100.0
TIGR02104		605	pulA_typeI pullulanase, type I. Pullulan is an unu	100.0
TIGR02102		1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	100.0
PLN02877		970	alpha-amylase/limit dextrinase	100.0
TIGR02103		898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	100.0
KOG0470		757	consensus 1,4-alpha-glucan branching enzyme/starch	100.0
TIGR02402		542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	100.0
PRK12568		730	glycogen branching enzyme; Provisional	100.0
PRK12313		633	glycogen branching enzyme; Provisional	100.0
PRK14706		639	glycogen branching enzyme; Provisional	100.0
TIGR01515		613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	100.0
PRK05402		726	glycogen branching enzyme; Provisional	100.0
PRK14705		1224	glycogen branching enzyme; Provisional	100.0
PLN02447		758	1,4-alpha-glucan-branching enzyme	100.0
COG0296		628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	100.0
PRK10785		598	maltodextrin glucosidase; Provisional	100.0
PLN02960		897	alpha-amylase	100.0
PRK09505		683	malS alpha-amylase; Reviewed	100.0
PRK10933		551	trehalose-6-phosphate hydrolase; Provisional	100.0
TIGR02456		539	treS_nterm trehalose synthase. Trehalose synthase	100.0
TIGR02403		543	trehalose_treC alpha,alpha-phosphotrehalase. Treha	100.0
PF00128		316	Alpha-amylase: Alpha amylase, catalytic domain; In	100.0
PRK09441		479	cytoplasmic alpha-amylase; Reviewed	100.0
PLN00196		428	alpha-amylase; Provisional	100.0
PLN02361		401	alpha-amylase	100.0
PLN02784		894	alpha-amylase	100.0
PRK13840		495	sucrose phosphorylase; Provisional	100.0
TIGR03852		470	sucrose_gtfA sucrose phosphorylase. In the forward	100.0
PLN03244		872	alpha-amylase; Provisional	100.0
COG0366		505	AmyA Glycosidases [Carbohydrate transport and meta	100.0
KOG0471		545	consensus Alpha-amylase [Carbohydrate transport an	99.98
TIGR02455		688	TreS_stutzeri trehalose synthase, Pseudomonas stut	99.96
smart00642		166	Aamy Alpha-amylase domain.	99.88
TIGR02401		825	trehalose_TreY malto-oligosyltrehalose synthase. T	99.87
PF14872		811	GHL5: Hypothetical glycoside hydrolase 5	99.85
KOG2212		504	consensus Alpha-amylase [Carbohydrate transport an	99.78
PRK14511		879	maltooligosyl trehalose synthase; Provisional	99.74
cd02852		119	Isoamylase_N_term Isoamylase N-terminus domain. Is	99.73
cd02856		103	Glycogen_debranching_enzyme_N_term Glycogen_debran	99.71
cd02860		100	Pullulanase_N_term Pullulanase domain N-terminus.	99.61
PRK14507		1693	putative bifunctional 4-alpha-glucanotransferase/m	99.61
PF02922		85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	99.42
TIGR01531		1464	glyc_debranch glycogen debranching enzymye. glycog	99.37
COG3280		889	TreY Maltooligosyl trehalose synthase [Carbohydrat	99.36
cd02853		85	MTHase_N_term Maltooligosyl trehalose synthase (MT	99.23
cd02854		99	Glycogen_branching_enzyme_like_N_term Glycogen bra	99.1
cd02855		106	Glycogen_branching_enzyme_N_term Glycogen branchin	98.83
PF14701		423	hDGE_amylase: glucanotransferase domain of human g	98.66
PF02638		311	DUF187: Glycosyl hydrolase like GH101; InterPro: I	98.6
cd02858		85	Esterase_N_term Esterase N-terminal domain. Estera	98.57
PRK05402		726	glycogen branching enzyme; Provisional	98.38
PF14871		132	GHL6: Hypothetical glycosyl hydrolase 6	98.34
COG1649		418	Uncharacterized protein conserved in bacteria [Fun	98.17
cd02688		83	E_set E or "early" set of sugar utilizing enzymes	98.12
cd02861		82	E_set_proteins_like E or "early" set-like proteins	98.04
PF02324		809	Glyco_hydro_70: Glycosyl hydrolase family 70; Inte	97.65
cd06593		308	GH31_xylosidase_YicI YicI alpha-xylosidase is a gl	97.45
PF02065		394	Melibiase: Melibiase; InterPro: IPR000111 O-Glycos	97.42
cd06592		303	GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact	97.41
KOG3625		1521	consensus Alpha amylase [Carbohydrate transport an	97.23
cd06597		340	GH31_transferase_CtsY CtsY (cyclic tetrasaccharide	97.1
cd06594		317	GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl	96.9
PF02324		809	Glyco_hydro_70: Glycosyl hydrolase family 70; Inte	96.87
cd06602		339	GH31_MGAM_SI_GAA This family includes the followin	96.62
cd06591		319	GH31_xylosidase_XylS XylS is a glycosyl hydrolase	96.6
PLN02635		538	disproportionating enzyme	96.59
TIGR02401		825	trehalose_TreY malto-oligosyltrehalose synthase. T	96.59
PF13200		316	DUF4015: Putative glycosyl hydrolase domain	96.33
cd06600		317	GH31_MGAM-like This family includes the following	96.33
cd06599		317	GH31_glycosidase_Aec37 Glycosyl hydrolase family 3	96.32
PRK14582		671	pgaB outer membrane N-deacetylase; Provisional	96.26
PF13199		559	Glyco_hydro_66: Glycosyl hydrolase family 66; PDB:	96.01
PRK10426		635	alpha-glucosidase; Provisional	95.94
PRK14508		497	4-alpha-glucanotransferase; Provisional	95.9
PRK10658		665	putative alpha-glucosidase; Provisional	95.82
PRK14511		879	maltooligosyl trehalose synthase; Provisional	95.78
PF01055		441	Glyco_hydro_31: Glycosyl hydrolases family 31 ; In	95.76
cd02859		79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	95.74
cd06604		339	GH31_glucosidase_II_MalA Alpha-glucosidase II (alp	95.63
cd06598		317	GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide	95.37
cd06603		339	GH31_GANC_GANAB_alpha This family includes the clo	94.7
cd06595		292	GH31_xylosidase_XylS-like This family represents a	94.08
TIGR00217		513	malQ 4-alpha-glucanotransferase. This enzyme is kn	93.81
COG1501		772	Alpha-glucosidases, family 31 of glycosyl hydrolas	93.63
PRK14510		1221	putative bifunctional 4-alpha-glucanotransferase/g	93.38
PF00150		281	Cellulase: Cellulase (glycosyl hydrolase family 5)	93.33
PLN02763		978	hydrolase, hydrolyzing O-glycosyl compounds	93.3
cd06542		255	GH18_EndoS-like Endo-beta-N-acetylglucosaminidases	93.2
PRK11052		695	malQ 4-alpha-glucanotransferase; Provisional	92.77
cd06563		357	GH20_chitobiase-like The chitobiase of Serratia ma	92.17
cd06562		348	GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c	92.07
KOG1065		805	consensus Maltase glucoamylase and related hydrola	91.62
PLN03244		872	alpha-amylase; Provisional	91.19
PF05913		357	DUF871: Bacterial protein of unknown function (DUF	91.04
PLN02950		909	4-alpha-glucanotransferase	90.8
PF02449		374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	90.5
cd02857		116	CD_pullulan_degrading_enzymes_N_term CD and pullul	90.26
cd06601		332	GH31_lyase_GLase GLases (alpha-1,4-glucan lyases)	90.18
cd02875		358	GH18_chitobiase Chitobiase (also known as di-N-ace	90.0
cd06565		301	GH20_GcnA-like Glycosyl hydrolase family 20 (GH20)	89.88
cd06564		326	GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (	89.87
PF02446		496	Glyco_hydro_77: 4-alpha-glucanotransferase; InterP	88.99
PF14488		166	DUF4434: Domain of unknown function (DUF4434)	88.83
cd06568		329	GH20_SpHex_like A subgroup of the Glycosyl hydrola	88.75
cd02871		312	GH18_chitinase_D-like GH18 domain of Chitinase D (	88.68
COG1640		520	MalQ 4-alpha-glucanotransferase [Carbohydrate tran	88.6
COG3589		360	Uncharacterized conserved protein [Function unknow	88.52
PRK14507		1693	putative bifunctional 4-alpha-glucanotransferase/m	88.23
cd02742		303	GH20_hexosaminidase Beta-N-acetylhexosaminidases o	87.96
PF07745		332	Glyco_hydro_53: Glycosyl hydrolase family 53; Inte	87.95
cd06545		253	GH18_3CO4_chitinase The Bacteroides thetaiotaomicr	87.62
cd06589		265	GH31 The enzymes of glycosyl hydrolase family 31 (	86.29
COG1523		697	PulA Type II secretory pathway, pullulanase PulA a	85.36
PF14883		294	GHL13: Hypothetical glycosyl hydrolase family 13	85.34
PF00728		351	Glyco_hydro_20: Glycosyl hydrolase family 20, cata	83.64
PRK12568		730	glycogen branching enzyme; Provisional	81.72
cd06570		311	GH20_chitobiase-like_1 A functionally uncharacteri	80.69
PF02903		120	Alpha-amylase_N: Alpha amylase, N-terminal ig-like	80.65
PF01301		319	Glyco_hydro_35: Glycosyl hydrolases family 35; Int	80.43

>PRK03705 glycogen debranching enzyme; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.4e-100  Score=872.66  Aligned_cols=529  Identities=42%  Similarity=0.768  Sum_probs=455.7

Q ss_pred             ccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEEEeCCCCcCCccceeeecccccCCCCCEEEEEEcCCCCCceEEEEEc
Q 005976           90 VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD  169 (666)
Q Consensus        90 ~~~g~~~~lGa~~~~~g~~F~vwap~a~~v~L~l~~~~~~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~i~  169 (666)
                      +..|.+.||||++.++||+|+||||+|++|+|+||+..+    . ..+++|.   .+++|||+++|+++..+.+|+|+|+
T Consensus         4 ~~~g~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~----~-~~~~~m~---~~~~gvW~~~v~~~~~G~~Y~yrv~   75 (658)
T PRK03705          4 LAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENG----Q-EQRYDLP---ARSGDIWHGYLPGARPGLRYGYRVH   75 (658)
T ss_pred             cCCCCCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCC----C-eeeEeee---eccCCEEEEEECCCCCCCEEEEEEc
Confidence            457899999999999999999999999999999997532    1 2356663   4568999999999999999999999


Q ss_pred             CccCCCCCccccCcceecCccceeeeeccccCCc------CCC--CCCCCcceeccCCCCCCCCCCCCCCCCCCCCCeEE
Q 005976          170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL------GPD--ENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLII  241 (666)
Q Consensus       170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~------~~~--~~~~~~~~~~v~~~~~~~~W~~~~~~~~~~~~~vI  241 (666)
                      |.+.++.|+++++.++++||||+++..+..++..      .+.  .+..-...++|.+  ..|+|+++.++..+++++||
T Consensus        76 g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~W~~~~~p~~~~~~~vI  153 (658)
T PRK03705         76 GPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD--DHYDWEDDAPPRTPWGSTVI  153 (658)
T ss_pred             cccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec--CCCCCCCCCCCCCCccccEE
Confidence            9888889999999999999999999754322111      000  0000012334433  46999988888889999999


Q ss_pred             EEEEeCCcccC-CCCCCCCCcchhhhhh--hhHHHHHcCCceEEECccccccccccccccCcCCCCCccccCCcccCCCC
Q 005976          242 YEVHVRGFTRH-ESSKTEHPGTYLGVVE--KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS  318 (666)
Q Consensus       242 Yei~v~~f~~~-~~~~~~~~G~~~gi~~--~L~yLk~LGvnaI~L~Pi~e~~~~~~~~~~~~~~~~~~~~wGY~~~dy~~  318 (666)
                      ||+|||+|+.. .+++...+|||+++++  +|+|||+||||+||||||+++.+.....     .....++|||+|.+||+
T Consensus       154 YE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~-----~~g~~~ywGYd~~~yfa  228 (658)
T PRK03705        154 YEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQ-----RMGLSNYWGYNPLAMFA  228 (658)
T ss_pred             EEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCccccc-----ccccccccCcccccccc
Confidence            99999999974 4445567999999997  4999999999999999999986421110     01123679999999999


Q ss_pred             cCCCCCCCCccCCCCCcHHHHHHHHHHHHHcCCEEEEeeccccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCC
Q 005976          319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCG  398 (666)
Q Consensus       319 ~d~~ygt~~~~~~~~g~~~efk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~  398 (666)
                      |+++||+.+.     .+++|||+||++||++||+||||||+||++..+..++.+.+++.++..||+.++.|.+.+|++|+
T Consensus       229 ~d~~ygt~~~-----~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g  303 (658)
T PRK03705        229 LDPAYASGPE-----TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCG  303 (658)
T ss_pred             cccccCCCCc-----chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCcc
Confidence            9999999542     35899999999999999999999999999987666677788888889999988888999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCC
Q 005976          399 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPI  478 (666)
Q Consensus       399 ~dln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~  478 (666)
                      ++||+++|+||++|+++++||+++|||||||||+|.+|.+...||..                     .+++++|+.+|+
T Consensus       304 ~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~---------------------~~~~~ai~~d~v  362 (658)
T PRK03705        304 NTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQD---------------------APLFTAIQNDPV  362 (658)
T ss_pred             CcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchh---------------------hHHHHHHhhCcc
Confidence            99999999999999999999999999999999999999876556543                     346888998999


Q ss_pred             CCCceEEEeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCccccCCCCCCcceEEecc
Q 005976          479 LRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC  557 (666)
Q Consensus       479 ~~~~~liaE~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~~r~~l~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~infv~  557 (666)
                      +++++||||.|+.+ +.++.+.++.  .+++||+.|++.+|.|+.+.++..+.++..+.++..+|......|.++||||+
T Consensus       363 l~~~~ligE~Wd~~~~~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~  440 (658)
T PRK03705        363 LSQVKLIAEPWDIGPGGYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVT  440 (658)
T ss_pred             ccceEEEEecccCCCChhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEE
Confidence            99999999999987 5677887763  68999999999999999988888899999999998888766678999999999


Q ss_pred             cCCCCChhHHHhhhcccccccCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCceeccccccccC
Q 005976          558 AHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH  637 (666)
Q Consensus       558 nHD~~rl~d~~~~~~~~~~a~g~~~~dg~~~~~sw~~g~~g~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~  637 (666)
                      +||++||.|+++|+.|+|+++|+.++||+++|+|||||.||++....+..+|.+++|+++++||++|||||||||||+|+
T Consensus       441 ~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~gr  520 (658)
T PRK03705        441 AHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGH  520 (658)
T ss_pred             eCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhcc
Confidence            99999999999999999999999999999999999999999999988888999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCccccccccccc
Q 005976          638 TKGGNNNTYCHDNDVNLCTLLISG  661 (666)
Q Consensus       638 t~~gn~n~y~~~~~~n~~dw~~~~  661 (666)
                      ||.||+|+||+++++||+||...+
T Consensus       521 tq~G~nN~y~~~~~i~~~dW~~~~  544 (658)
T PRK03705        521 SQHGNNNAYCQDNALTWLDWSQAD  544 (658)
T ss_pred             CCCCCCCCccCCCCccccccchhh
Confidence            999999999999999999998653

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX	Back alignment and domain information

>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional	Back alignment and domain information

>TIGR02104 pulA_typeI pullulanase, type I	Back alignment and domain information

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive	Back alignment and domain information

>PLN02877 alpha-amylase/limit dextrinase	Back alignment and domain information

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type	Back alignment and domain information

>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase	Back alignment and domain information

>PRK12568 glycogen branching enzyme; Provisional	Back alignment and domain information

>PRK12313 glycogen branching enzyme; Provisional	Back alignment and domain information

>PRK14706 glycogen branching enzyme; Provisional	Back alignment and domain information

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	Back alignment and domain information

>PRK05402 glycogen branching enzyme; Provisional	Back alignment and domain information

>PRK14705 glycogen branching enzyme; Provisional	Back alignment and domain information

>PLN02447 1,4-alpha-glucan-branching enzyme	Back alignment and domain information

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10785 maltodextrin glucosidase; Provisional	Back alignment and domain information

>PLN02960 alpha-amylase	Back alignment and domain information

>PRK09505 malS alpha-amylase; Reviewed	Back alignment and domain information

>PRK10933 trehalose-6-phosphate hydrolase; Provisional	Back alignment and domain information

>TIGR02456 treS_nterm trehalose synthase	Back alignment and domain information

>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase	Back alignment and domain information

>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3	Back alignment and domain information

>PRK09441 cytoplasmic alpha-amylase; Reviewed	Back alignment and domain information

>PLN00196 alpha-amylase; Provisional	Back alignment and domain information

>PLN02361 alpha-amylase	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PRK13840 sucrose phosphorylase; Provisional	Back alignment and domain information

>TIGR03852 sucrose_gtfA sucrose phosphorylase	Back alignment and domain information

>PLN03244 alpha-amylase; Provisional	Back alignment and domain information

>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type	Back alignment and domain information

>smart00642 Aamy Alpha-amylase domain	Back alignment and domain information

>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase	Back alignment and domain information

>PF14872 GHL5: Hypothetical glycoside hydrolase 5	Back alignment and domain information

>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14511 maltooligosyl trehalose synthase; Provisional	Back alignment and domain information

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain	Back alignment and domain information

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain	Back alignment and domain information

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus	Back alignment and domain information

>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional	Back alignment and domain information

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3	Back alignment and domain information

>TIGR01531 glyc_debranch glycogen debranching enzymye	Back alignment and domain information

>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain	Back alignment and domain information

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain	Back alignment and domain information

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain	Back alignment and domain information

>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme	Back alignment and domain information

>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function	Back alignment and domain information

>cd02858 Esterase_N_term Esterase N-terminal domain	Back alignment and domain information

>PRK05402 glycogen branching enzyme; Provisional	Back alignment and domain information

>PF14871 GHL6: Hypothetical glycosyl hydrolase 6	Back alignment and domain information

>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies	Back alignment and domain information

>cd02861 E_set_proteins_like E or "early" set-like proteins	Back alignment and domain information

>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose	Back alignment and domain information

>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase	Back alignment and domain information

>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ	Back alignment and domain information

>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride	Back alignment and domain information

>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase	Back alignment and domain information

>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate	Back alignment and domain information

>PLN02635 disproportionating enzyme	Back alignment and domain information

>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase	Back alignment and domain information

>PF13200 DUF4015: Putative glycosyl hydrolase domain	Back alignment and domain information

>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II	Back alignment and domain information

>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37	Back alignment and domain information

>PRK14582 pgaB outer membrane N-deacetylase; Provisional	Back alignment and domain information

>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A	Back alignment and domain information

>PRK10426 alpha-glucosidase; Provisional	Back alignment and domain information

>PRK14508 4-alpha-glucanotransferase; Provisional	Back alignment and domain information

>PRK10658 putative alpha-glucosidase; Provisional	Back alignment and domain information

>PRK14511 maltooligosyl trehalose synthase; Provisional	Back alignment and domain information

>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)	Back alignment and domain information

>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities	Back alignment and domain information

>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY	Back alignment and domain information

>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB)	Back alignment and domain information

>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus	Back alignment and domain information

>TIGR00217 malQ 4-alpha-glucanotransferase	Back alignment and domain information

>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional	Back alignment and domain information

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3	Back alignment and domain information

>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins	Back alignment and domain information

>PRK11052 malQ 4-alpha-glucanotransferase; Provisional	Back alignment and domain information

>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	Back alignment and domain information

>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides	Back alignment and domain information

>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN03244 alpha-amylase; Provisional	Back alignment and domain information

>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea	Back alignment and domain information

>PLN02950 4-alpha-glucanotransferase	Back alignment and domain information

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain	Back alignment and domain information

>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end	Back alignment and domain information

>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes	Back alignment and domain information

>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	Back alignment and domain information

>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins	Back alignment and domain information

>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF14488 DUF4434: Domain of unknown function (DUF4434)	Back alignment and domain information

>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex)	Back alignment and domain information

>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD)	Back alignment and domain information

>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3589 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional	Back alignment and domain information

>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides	Back alignment and domain information

>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas	Back alignment and domain information

>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase	Back alignment and domain information

>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13	Back alignment and domain information

>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3	Back alignment and domain information

>PRK12568 glycogen branching enzyme; Provisional	Back alignment and domain information

>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	Back alignment and domain information

>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		666
2vnc_A		718	Crystal Structure Of Glycogen Debranching Enzyme Tr		1e-125
2wsk_A		657	Crystal Structure Of Glycogen Debranching Enzyme Gl		1e-106
1bf2_A		750	Structure Of Pseudomonas Isoamylase Length = 750		2e-67
2wan_A		921	Pullulanase From Bacillus Acidopullulyticus Length		1e-38
2e8y_A		718	Crystal Structure Of Pullulanase Type I From Bacill		1e-31
2ya2_A		708	Catalytic Module Of The Multi-Modular Glycogen-Degr		8e-31
2ya0_A		714	Catalytic Module Of The Multi-Modular Glycogen-Degr		8e-31
2ya1_A		1014	Product Complex Of A Multi-Modular Glycogen-Degradi		8e-31
3faw_A		877	Crystal Structure Of The Group B Streptococcus Pull		2e-26
1eha_A		558	Crystal Structure Of Glycosyltrehalose Trehalohydro		1e-19
3vgg_A		558	Crystal Structure Of Glycosyltrehalose Trehalohydro		1e-19
1eh9_A		558	Crystal Structure Of Sulfolobus Solfataricus Glycos		1e-19
3vgd_A		558	Ctystal Structure Of Glycosyltrehalose Trehalohydro		4e-19
3vge_A		558	Crystal Structure Of Glycosyltrehalose Trehalohydro		6e-19
2y4s_A		884	Barley Limit Dextrinase In Complex With Beta-Cyclod		2e-16
3m07_A		618	1.4 Angstrom Resolution Crystal Structure Of Putati		7e-16
2bhu_A		602	Crystal Structure Of Deinococcus Radiodurans Maltoo		2e-13
2fh6_A		920	Crystal Structure Analysis Of Klebsiella Pneumoniae		3e-12
2fhb_A		1083	Crystal Structure Analysis Of Klebsiella Pneumoniae		4e-12
2fgz_A		926	Crystal Structure Analysis Of Apo Pullulanase From		4e-12
2fh8_A		922	Crystal Structure Analysis Of Klebsiella Pneumoniae		4e-12
2bhy_A		602	Crystal Structure Of Deinococcus Radiodurans Maltoo		1e-11
1wza_A		488	Crystal Structure Of Alpha-Amylase From H.Orenii Le		5e-11
4gkl_A		422	Crystal Structure Of A Noncanonic Maltogenic Alpha-		1e-10
2wc7_A		488	Crystal Structure Of Nostoc Punctiforme Debranching		2e-10
3k1d_A		722	Crystal Structure Of Glycogen Branching Enzyme Syno		6e-10
1sma_A		588	Crystal Structure Of A Maltogenic Amylase Length =		1e-09
1gvi_A		588	Thermus Maltogenic Amylase In Complex With Beta-Cd		1e-09
3dhu_A		449	Crystal Structure Of An Alpha-Amylase From Lactobac		1e-09
1ea9_C		583	Cyclomaltodextrinase Length = 583		2e-09
1m53_A		570	Crystal Structure Of Isomaltulose Synthase (Pali) F		6e-09
1uok_A		558	Crystal Structure Of B. Cereus Oligo-1,6-Glucosidas		1e-08
1j0j_A		588	Crystal Structure Of Neopullulanase E357q Complex W		2e-08
1j0h_A		588	Crystal Structure Of Bacillus Stearothermophilus Ne		2e-08
1jf5_A		585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		3e-08
1g1y_A		585	Crystal Structure Of Alpha-Amylase Ii (Tvaii) From		5e-08
1wzk_A		585	Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T		5e-08
1wzm_A		585	Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (t		5e-08
1bvz_A		585	Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vul		5e-08
1jf6_A		585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		5e-08
1wzl_A		585	Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T		5e-08
3gbd_A		558	Crystal Structure Of The Isomaltulose Synthase Smua		1e-07
2ze0_A		555	Alpha-glucosidase Gsj Length = 555		2e-07
1jl8_A		585	Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoact		2e-07
1vfm_A		585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		2e-07
2z1k_A		475	Crystal Structure Of Ttha1563 From Thermus Thermoph		3e-07
4aef_A		645	The Crystal Structure Of Thermostable Amylase From		8e-07
1lwh_A		441	Crystal Structure Of T. Maritima 4-Alpha-Glucanotra		2e-06
4gi6_A		557	Crystal Structure Of The Mutb F164l Mutant In Compl		2e-06
1zja_A		557	Crystal Structure Of The Trehalulose Synthase Mutb		3e-06
2pwe_A		556	Crystal Structure Of The Mutb E254q Mutant In Compl		3e-06
2pwg_A		556	Crystal Structure Of The Trehalulose Synthase Mutb		3e-06
4h2c_A		557	Trehalulose Synthase Mutb R284c Mutant Length = 557		3e-06
4gin_A		584	Crystal Structure Of The Mutb R284c Mutant From Cry		4e-06
1m7x_A		617	The X-Ray Crystallographic Structure Of Branching E		9e-06
3aml_A		755	Structure Of The Starch Branching Enzyme I (Bei) Fr		2e-05
3amk_A		702	Structure Of The Starch Branching Enzyme I (Bei) Fr		2e-05
2pwf_A		556	Crystal Structure Of The Mutb D200a Mutant In Compl		2e-05
4aee_A		696	Crystal Structure Of Maltogenic Amylase From S.Mari		3e-05
1cyg_A		680	Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgt		4e-05
3k8l_A		669	Crystal Structure Of Susg-D498n Mutant With Maltohe		4e-05
3k8k_A		669	Crystal Structure Of Susg Length = 669		9e-05
2zic_A		543	Crystal Structure Of Streptococcus Mutans Dextran G		2e-04
2zid_A		543	Crystal Structure Of Dextran Glucosidase E236q Comp		2e-04
4cgt_A		678	Deletion Mutant Delta(145-150), F151d Of Cyclodextr		2e-04
6cgt_A		684	Hoxa Complex Of Cyclodextrin Glycosyltransferase Mu		4e-04
4aie_A		549	Structure Of Glucan-1,6-Alpha-Glucosidase From Lact		7e-04
8cgt_A		684	Structure Of Cyclodextrin Glycosyltransferase Compl		7e-04
1cgt_A		684	Structure Of Cyclodextrin Glycosyltransferase Refin		7e-04

>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From Sulfolobus Solfataricus Length = 718