Citrus Sinensis ID: 005981
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 666 | 2.2.26 [Sep-21-2011] | |||||||
| O22285 | 694 | Probable methyltransferas | yes | no | 0.984 | 0.945 | 0.684 | 0.0 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.972 | 0.950 | 0.693 | 0.0 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.951 | 0.967 | 0.646 | 0.0 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.807 | 0.648 | 0.450 | 1e-141 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.729 | 0.631 | 0.485 | 1e-141 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.740 | 0.550 | 0.483 | 1e-140 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.803 | 0.694 | 0.452 | 1e-139 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.711 | 0.777 | 0.485 | 1e-138 | |
| Q9SIZ3 | 589 | Probable methyltransferas | no | no | 0.786 | 0.889 | 0.447 | 1e-138 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.732 | 0.802 | 0.471 | 1e-135 |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/701 (68%), Positives = 556/701 (79%), Gaps = 45/701 (6%)
Query: 3 NPLSNTDLFK------LSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYV 55
PL+N DLFK +SAL+FV+ FFYLGK WSD G Q+++FFSS TS + + V
Sbjct: 2 KPLTNGDLFKSPTLIKISALVFVTVAFFYLGKHWSDDGYQQLVFFSSSTSGSSIPE---V 58
Query: 56 SLSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPE------------- 102
S+SPN N+ F++S++I N + + PA + PP +
Sbjct: 59 SVSPNSNRVFNLSAIIPTNHTQ-----IEIPATIRQQPPSVVADTEKVKVEANPPPPPPP 113
Query: 103 ------------RFGIVNEDGTMSDDFEIGEYDPDLVE-----TEWNGDRNGTEATKSFK 145
FGIV+ +G MSDDFE+GE + D VE TE ++ ++ +
Sbjct: 114 SPSPPPPPGPVKSFGIVDANGVMSDDFEVGEVESDTVEDWGNQTEIVEAKSDGDSKARVR 173
Query: 146 ITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTP 205
I ++ MCP SMREYIPCLDN + IK+LKST++GERFERHCP G GLNCLVP PKGY+ P
Sbjct: 174 IKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQP 233
Query: 206 IPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKM 265
IPWP+SR+EVW++NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KM
Sbjct: 234 IPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKM 293
Query: 266 VPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVA 325
V DIT+G HIRV MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM A
Sbjct: 294 VSDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAA 353
Query: 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385
AFATRRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A
Sbjct: 354 AFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPA 413
Query: 386 QEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVW 445
EE W EML+LT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD D+PDNVW
Sbjct: 414 LEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVW 473
Query: 446 YVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII 505
Y +LK CI+R+PE GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII
Sbjct: 474 YTNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEII 533
Query: 506 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL 565
YVRAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL
Sbjct: 534 GGYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGL 593
Query: 566 IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 625
+GVMHDWCEPFDTYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSID
Sbjct: 594 LGVMHDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSID 653
Query: 626 VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKRLLHA 666
VMDE+QEI KAMGWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 654 VMDEIQEITKAMGWHTSLRDTSEGPHASYRILTCEKRLLRA 694
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/669 (69%), Positives = 550/669 (82%), Gaps = 21/669 (3%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWS-DGNQRILFFSSYTSSRTSQQNGYVSLSPNL 61
N L N+ FK+SA + +S F+LGK WS DG +R++FFS+ S ++ V+LSP+
Sbjct: 8 NLLRNSIFFKISAFVLISVACFFLGKHWSEDGFRRLIFFSAEPS-----RSPIVALSPDF 62
Query: 62 NKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIGE 121
K+++IS LI ++ + P + P P P + FGIVNE+GTMSD+F+IG+
Sbjct: 63 GKTYNISGLIYESHPILPPSLSPPPPP--------DSVELKVFGIVNENGTMSDEFQIGD 114
Query: 122 YDPDLVET-------EWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKS 174
YD + ET E + D + T + ++E+C +M EYIPCLDNVEAIK+L S
Sbjct: 115 YDVESAETLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDNVEAIKRLNS 174
Query: 175 TDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNW 234
T +GERFER+CP +G GLNC VP P+GY++PIPWPRSR+EVW+NNVPH++LVEDKGGQNW
Sbjct: 175 TARGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNW 234
Query: 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP 294
I KE DKFKFPGGGTQFIHGADQYLDQI++M+PDI++G+H RVV+D GCGVASFGAYL+
Sbjct: 235 IYKENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 295 RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354
RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YPSQAFDL+HCSRCRINWTRD
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 355 DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414
DGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+LTTRLCW LVKKEGYIAIW
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRT 474
+KP NN+CYL+R AG PPLC+ +D+PDNVWYVDLKACITR+ ENGYGAN++ WP RL T
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGYGANLAPWPARLLT 474
Query: 475 SPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAA 534
PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK++ LRNVLDMRAGFGGFAA
Sbjct: 475 PPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWKQIGLRNVLDMRAGFGGFAA 534
Query: 535 ALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594
AL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDWCEPFDTYPRTYDLLHAAGLFS+
Sbjct: 535 ALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSI 594
Query: 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASY 654
E KRCNM+T+MLEMDR+LRPGG VYIRD+I+V ELQEIG AM WH +LRETAEGPH+SY
Sbjct: 595 ERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETAEGPHSSY 654
Query: 655 RILTADKRL 663
R+L +KR
Sbjct: 655 RVLLCEKRF 663
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/660 (64%), Positives = 513/660 (77%), Gaps = 26/660 (3%)
Query: 10 LFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVSLSPNLNKSFDISS 69
L KL A F+S + +L +SD FS Y SL ++ S +++
Sbjct: 16 LVKLIAFAFLSISTIFLFNHFSDS------FS------------YPSLPFPISSSSNVTE 57
Query: 70 LISQN-QSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIGEYDPDLVE 128
I N S+A+ P P P + PPP PP R GI+NE+G MSD FEIG +DPD ++
Sbjct: 58 AIQTNITSVAAVAPSPPPRPRLKISPPPLPPTVVRTGIINENGAMSDSFEIGGFDPDSID 117
Query: 129 TEWNGDRNGTEATK-----SFKITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGERFER 183
+ N + K F+I + ++C + +YIPCLDN E IK+L +TD+GE +ER
Sbjct: 118 ELKSATGNSSVEEKESPEVGFQIEKLKLCDKTKIDYIPCLDNEEEIKRLNNTDRGENYER 177
Query: 184 HCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFK 243
HCP L+CL+P P GYK PI WP+SR+++W+NNVPH+RLVEDKGGQNWI +EKDKF
Sbjct: 178 HCP--KQSLDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFV 235
Query: 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIA 303
FPGGGTQFIHGADQYLDQI++M+PDIT+G RV +D GCGVASFGA+L+ RN T+S+A
Sbjct: 236 FPGGGTQFIHGADQYLDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVA 295
Query: 304 PKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVN 363
PKDVHENQIQFALERG PAMVA FATRRL YPSQ+F++IHCSRCRINWTRDDGILLLEVN
Sbjct: 296 PKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVN 355
Query: 364 RMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCY 423
RMLRAGGYF WAAQPVYKHE+ +E WKEMLDLT R+CWEL+KKEGYIA+W+KP NNSCY
Sbjct: 356 RMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCY 415
Query: 424 LNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQ 483
++REAGT PPLC PDD+PD+VWYVD+K CITRLP+NGYGANVS WP RL P+RLQSIQ
Sbjct: 416 VSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGYGANVSTWPARLHDPPERLQSIQ 475
Query: 484 LDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDC 543
+DA+I+RKE+ KAES++W E++ESYVR WK+ KLRNVLDMRAGFGGFAAAL + DC
Sbjct: 476 MDAYISRKEIMKAESRFWLEVVESYVRVFRWKEFKLRNVLDMRAGFGGFAAALNDLGLDC 535
Query: 544 WVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMST 603
WVMN+VPVSGFNTLPVIYDRGL G MHDWCEPFDTYPRTYDL+HAA LFSVE KRCN++
Sbjct: 536 WVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVEKKRCNITN 595
Query: 604 IMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKRL 663
IMLEMDRMLRPGGHVYIRDS+ +MD+LQ++ KA+GW + +T EGPHAS RIL DKR+
Sbjct: 596 IMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGWTAGVHDTGEGPHASVRILICDKRI 655
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/562 (45%), Positives = 348/562 (61%), Gaps = 24/562 (4%)
Query: 99 PPPERFGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMR- 157
PP + ++NE + F TE ++ + + ++ +C +
Sbjct: 255 PPGAQLELLNETTAQNGSFST-------QATESKNEKEAQKGSGDKLDYKWALCNTTAGP 307
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDNV+AI+ L ST E ERHCP + CLVP P GYK PI WP+SR ++WY
Sbjct: 308 DYIPCLDNVQAIRSLPSTKHYEHRERHCP--DSPPTCLVPLPDGYKRPIEWPKSREKIWY 365
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NVPH++L E KG QNW+ + FPGGGTQF HGA Y+D I + VP I WG RV
Sbjct: 366 TNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRV 425
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
V+D GCGVASFG +L R+VITMS+APKD HE Q+QFALERG PA+ A T RLP+P +
Sbjct: 426 VLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGR 485
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FD++HC+RCR+ W + G LLLE+NR+LR GG+F W+A PVY+ + E WK M +L
Sbjct: 486 VFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELI 545
Query: 398 TRLCWELVKKEG------YIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKA 451
++CWELV +A ++KPT+N CY NR + +PP+C D+P+ W V L+A
Sbjct: 546 KKMCWELVSINKDTINGVGVATYRKPTSNECYKNR-SEPVPPICADSDDPNASWKVPLQA 604
Query: 452 CITRLPENGYGANVS---LWPERLRTSPDRLQSIQLDAF-IARKELFKAESKYWNEII-E 506
C+ PE+ WP RL +P L S Q + A E F A+ ++W ++ +
Sbjct: 605 CMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTK 664
Query: 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLI 566
SY+ L +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TL +IY+RGL
Sbjct: 665 SYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKV--WVMNVVPIDSPDTLAIIYERGLF 722
Query: 567 GVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV 626
G+ HDWCE F TYPR+YDLLHA LFS +RCN++ ++ E+DR+LRP G + +RD +
Sbjct: 723 GIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAET 782
Query: 627 MDELQEIGKAMGWHVTLRETAE 648
+ +++ + KAM W V + + E
Sbjct: 783 IQQVEGMVKAMKWEVRMTYSKE 804
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/501 (48%), Positives = 328/501 (65%), Gaps = 15/501 (2%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN +AIK+L +T E ERHCP +CLV P GYK I WP+SR ++WY
Sbjct: 250 DYIPCLDNWQAIKKLHTTMHYEHRERHCPEESP--HCLVSLPDGYKRSIKWPKSREKIWY 307
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NNVPH++L E KG QNW+ + FPGGGTQF +GA Y+D I + P I WG+ RV
Sbjct: 308 NNVPHTKLAEIKGHQNWVKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRV 367
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
++D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM+ T+RLP+P
Sbjct: 368 ILDVGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGS 427
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E WK M +LT
Sbjct: 428 VFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELT 487
Query: 398 TRLCWELVK------KEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKA 451
+CW+LV E AI++KPT+N CY N+ PPLC D+ + W V L+A
Sbjct: 488 KAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCY-NKRPQNEPPLCKDSDDQNAAWNVPLEA 546
Query: 452 CITRLPENGYGANV---SLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ES 507
C+ ++ E+ ++WPER+ T+P+ L S + E F A+ + W I+ ++
Sbjct: 547 CMHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKA 606
Query: 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIG 567
Y+ + +RNV+DMRA +GGFAAAL + K WVMNVVPV +TLP+IY+RGL G
Sbjct: 607 YLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPVDAPDTLPIIYERGLFG 664
Query: 568 VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM 627
+ HDWCE F+TYPRTYDLLHA LFS KRCN+ ++M E+DR+LRP G IRD ++ +
Sbjct: 665 IYHDWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETL 724
Query: 628 DELQEIGKAMGWHVTLRETAE 648
E++++ K+M W V + ++ +
Sbjct: 725 GEVEKMVKSMKWKVKMTQSKD 745
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/517 (48%), Positives = 337/517 (65%), Gaps = 24/517 (4%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN EAI +L+S E ERHCP + CLVP P+GYK I WP SR+++WY
Sbjct: 381 DYIPCLDNEEAIMKLRSRRHFEHRERHCPEDPP--TCLVPLPEGYKEAIKWPESRDKIWY 438
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH++L E KG QNW+ + FPGGGTQFIHGA Y+D + + + +I WG RV
Sbjct: 439 HNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRV 498
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
++D GCGVASFG +L R+VI MS+APKD HE Q+QFALER PA+ A ++RLP+PS+
Sbjct: 499 ILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSR 558
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FDLIHC+RCR+ W + G+LLLE+NRMLR GGYF W+A PVY+ E + WKEM LT
Sbjct: 559 VFDLIHCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALT 618
Query: 398 TRLCWELV-----KKEGY-IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKA 451
LCWELV K G AI++KP N CY R+ PPLC +D+ + WYV L+A
Sbjct: 619 KSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNK-PPLCKNNDDANAAWYVPLQA 677
Query: 452 CITRLPEN--GYGANVSL-WPERLRTSPDRLQSIQLDAFIA-RKELFKAESKYWNEIIES 507
C+ ++P N G+ + WP RL+T P L S Q+ + F + ++W ++
Sbjct: 678 CMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSK 737
Query: 508 -YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLI 566
Y+ + +RNV+DMRA +GGFAAAL + WVMNVV ++ +TLP+IY+RGL
Sbjct: 738 VYMNEIGISWSNVRNVMDMRAVYGGFAAAL--KDLQVWVMNVVNINSPDTLPIIYERGLF 795
Query: 567 GVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV 626
G+ HDWCE F TYPR+YDLLHA LFS RCN+ +M E+DR++RPGG + +RD +V
Sbjct: 796 GIYHDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNV 855
Query: 627 MDELQEIGKAMGW--HVTLRETAEGPHASYRILTADK 661
+ E++ + K++ W H+T + EG IL+A K
Sbjct: 856 IREVENMLKSLHWDVHLTFSKHQEG------ILSAQK 886
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/561 (45%), Positives = 345/561 (61%), Gaps = 26/561 (4%)
Query: 99 PPPERFGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMRE 158
P ++ I E T S G + LVE++ ++ ++ +K+ P +
Sbjct: 202 PAGDQAEITKESSTGS-----GAWSTQLVESQ--NEKKAQVSSIKWKVCNVTAGP----D 250
Query: 159 YIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYN 218
YIPCLDN +AI++L ST E ERHCP CLV P+GYK I WP+SR ++WY
Sbjct: 251 YIPCLDNWQAIRKLHSTKHYEHRERHCPEESP--RCLVSLPEGYKRSIKWPKSREKIWYT 308
Query: 219 NVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVV 278
N+PH++L E KG QNW+ + FPGGGTQF +GA Y+D + + PDI WG+ RV+
Sbjct: 309 NIPHTKLAEVKGHQNWVKMSGEYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVI 368
Query: 279 MDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQA 338
+D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM T+RLP+P
Sbjct: 369 LDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSV 428
Query: 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTT 398
FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E WK M LT
Sbjct: 429 FDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTK 488
Query: 399 RLCWEL--VKK----EGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKAC 452
+CWEL +KK E AI++KP +N CY N + PPLC D+ + W V L+AC
Sbjct: 489 AMCWELMTIKKDELNEVGAAIYQKPMSNKCY-NERSQNEPPLCKDSDDQNAAWNVPLEAC 547
Query: 453 ITRLPENGYGANV---SLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ESY 508
I ++ E+ WPER+ T P L S + +E F A+ + W I+ +SY
Sbjct: 548 IHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSY 607
Query: 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGV 568
+ + +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TLP+IY+RGL G+
Sbjct: 608 LNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPIDSPDTLPIIYERGLFGI 665
Query: 569 MHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMD 628
HDWCE F TYPRTYDLLHA LFS KRCN+ +M E+DR+LRP G +RD ++ +
Sbjct: 666 YHDWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIG 725
Query: 629 ELQEIGKAMGWHVTLRETAEG 649
E++++ K+M W+V + + +G
Sbjct: 726 EIEKMVKSMKWNVRMTHSKDG 746
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/494 (48%), Positives = 333/494 (67%), Gaps = 20/494 (4%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN +AIK+LKS E ERHCP CLVP P+ YK P+PWP+SR+ +WY
Sbjct: 114 DYIPCLDNTKAIKKLKSKRNMEHRERHCPERSP--KCLVPLPQHYKVPLPWPQSRDMIWY 171
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH +LVE K QNW+ K F FPGGGTQF G Y++ I K +P + WG +RV
Sbjct: 172 DNVPHPKLVEYKKDQNWVRKSGPFFVFPGGGTQFKDGVIHYINFIQKTLPILDWGKKVRV 231
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
V+D GCGVASFG LL +NVITMS APKD HE QIQFALERG PA +A T++LP+P
Sbjct: 232 VLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPATLAVIGTQKLPFPDN 291
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
A+D+IHC+RCR++W G LLE+NR+LR GG+F W+A PVY+H+E WK M LT
Sbjct: 292 AYDVIHCARCRVHWHGYGGRPLLELNRVLRPGGFFVWSATPVYQHDEGHRNVWKTMESLT 351
Query: 398 TRLCWELVKKEGY----IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDN-VWYVDLKAC 452
T +CW++V + + I++KP ++SCY +R+ PPLC ++ N WY L C
Sbjct: 352 TSMCWKVVARTRFTKVGFVIYQKPDSDSCYESRKNKD-PPLCIEEETKKNSSWYTPLLTC 410
Query: 453 ITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIES---YV 509
+ +LP + G S WPERL +P L Q +E F+ +SK W+ ++ + Y
Sbjct: 411 LPKLPVSPIGKWPSGWPERLTETPVSLFREQ-----RSEESFREDSKLWSGVMSNIYLYS 465
Query: 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 569
A++W ++ NV+DM AG+GGFAAALI + WVMNV+PV G +TL I+DRGLIG+
Sbjct: 466 LAINW--TRIHNVMDMNAGYGGFAAALINKPL--WVMNVIPVEGEDTLSTIFDRGLIGIY 521
Query: 570 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDE 629
HDWCE F+TYPR+YDLLH++ LF+ S+RC++ +++E+DR+LRPGG++ ++D+++++ +
Sbjct: 522 HDWCESFNTYPRSYDLLHSSFLFTNLSQRCDLMEVVVEIDRILRPGGYLAVQDTVEMLKK 581
Query: 630 LQEIGKAMGWHVTL 643
L I ++ W L
Sbjct: 582 LNPILLSLRWSTNL 595
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/574 (44%), Positives = 353/574 (61%), Gaps = 50/574 (8%)
Query: 84 PSPAPVDPLPPPPPPPPPERFGIVNEDGT-----MSDDFEIGEYDPDLVETEWNGDRNGT 138
PS + D P P P P R V+ D T ++ E+GE
Sbjct: 35 PSLSTTDYYTPIPKSPIPHRIVDVSSDQTPQKMKLNTSLEVGEL---------------- 78
Query: 139 EATKSFKITRYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVP 197
++++C G+ +YIPCLDN AIKQLKS E ERHCP CL+P
Sbjct: 79 ---------KWDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCP--EPSPKCLLP 127
Query: 198 APKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQ 257
P YK P+PWP+SR+ +WY+NVPH +LVE K QNW+ KE + FPGGGTQF G
Sbjct: 128 LPDNYKPPVPWPKSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTH 187
Query: 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317
Y++ I K +P I WG +IRVV+D GCGVASFG LL ++VITMS APKD HE QIQFALE
Sbjct: 188 YVEFIEKALPSIKWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALE 247
Query: 318 RGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377
RG PA ++ T++L +PS AFDLIHC+RCR++W D G LLE+NR+LR GG+F W+A
Sbjct: 248 RGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSAT 307
Query: 378 PVYKHEEAQEEHWKEMLDLTTRLCWELVKK----EGY-IAIWKKPTNNSCYLNREAGTIP 432
PVY+ + W EM+ LT +CW++V K G + I++KPT+ SCY N+ + P
Sbjct: 308 PVYRDNDRDSRIWNEMVSLTKSICWKVVTKTVDSSGIGLVIYQKPTSESCY-NKRSTQDP 366
Query: 433 PLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKE 492
PLCD + + WYV L C+++LP NV WPE P RL S++ + + E
Sbjct: 367 PLCDKKEA-NGSWYVPLAKCLSKLP----SGNVQSWPELW---PKRLVSVKPQSISVKAE 418
Query: 493 LFKAESKYWN-EIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551
K +++ W+ + + Y++ L +RNV+DM AGFGGFAAALI WVMNVVPV
Sbjct: 419 TLKKDTEKWSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALIN--LPLWVMNVVPV 476
Query: 552 SGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRM 611
+TL V+YDRGLIGV HDWCE +TYPRTYDLLH++ L ++RC + ++ E+DR+
Sbjct: 477 DKPDTLSVVYDRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRI 536
Query: 612 LRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 645
+RPGG++ ++D+++ + +L+ I ++ W + E
Sbjct: 537 VRPGGYLVVQDNMETIMKLESILGSLHWSTKIYE 570
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/509 (47%), Positives = 328/509 (64%), Gaps = 21/509 (4%)
Query: 144 FKITRYEMCPGSMREYIPCLDNVEAIKQLK---STDKGERFERHCPLNGTGLNCLVPAPK 200
F + +C E IPCLD I Q++ E +ERHCP NCL+P P
Sbjct: 71 FTPRSFPVCDDRHSELIPCLDR-NLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPN 129
Query: 201 GYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLD 260
GYK PI WP+SR+EVW N+PH+ L +K QNW+ + DK FPGGGT F +GAD+Y+
Sbjct: 130 GYKVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIA 189
Query: 261 QIAKMV--PD--ITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFAL 316
+A M+ P+ + G +R V D GCGVASFG YLL +++TMS+AP DVH+NQIQFAL
Sbjct: 190 SMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFAL 249
Query: 317 ERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376
ERG PA + T+RLPYPS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFA+++
Sbjct: 250 ERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSS 309
Query: 377 QPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCD 436
Y +E W+EM L R+CW++ K IW+KP N CYL RE GT PPLC
Sbjct: 310 PEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCR 369
Query: 437 PDDNPDNVWYVDLKACITRLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKEL 493
D++PD VW V+++ACIT ++ + G+ ++ WP RL + P RL F +
Sbjct: 370 SDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLAD-----FGYSTGM 424
Query: 494 FKAESKYWNEIIESYVRAL--HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551
F+ +++ W + +++Y L + +RN++DM+A G FAAAL E+ D WVMNVVP
Sbjct: 425 FEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPE 482
Query: 552 SGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFS-VESKRCNMSTIMLEMDR 610
G NTL +IYDRGL+G +H WCE F TYPRTYDLLHA + S ++ K C+ ++LEMDR
Sbjct: 483 DGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDR 542
Query: 611 MLRPGGHVYIRDSIDVMDELQEIGKAMGW 639
+LRP G + IRD V+D +++ KA+ W
Sbjct: 543 ILRPSGFIIIRDKQRVVDFVKKYLKALHW 571
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 666 | ||||||
| 255566464 | 673 | ATP binding protein, putative [Ricinus c | 0.983 | 0.973 | 0.730 | 0.0 | |
| 224101039 | 664 | predicted protein [Populus trichocarpa] | 0.977 | 0.980 | 0.737 | 0.0 | |
| 449465844 | 678 | PREDICTED: probable methyltransferase PM | 0.989 | 0.971 | 0.711 | 0.0 | |
| 224109464 | 669 | predicted protein [Populus trichocarpa] | 0.978 | 0.974 | 0.740 | 0.0 | |
| 297827583 | 689 | dehydration-responsive family protein [A | 0.981 | 0.949 | 0.698 | 0.0 | |
| 18405149 | 694 | putative methyltransferase PMT11 [Arabid | 0.984 | 0.945 | 0.684 | 0.0 | |
| 356569344 | 663 | PREDICTED: probable methyltransferase PM | 0.981 | 0.986 | 0.702 | 0.0 | |
| 225449394 | 686 | PREDICTED: probable methyltransferase PM | 0.990 | 0.962 | 0.712 | 0.0 | |
| 449441370 | 678 | PREDICTED: probable methyltransferase PM | 0.996 | 0.979 | 0.709 | 0.0 | |
| 449476436 | 679 | PREDICTED: probable methyltransferase PM | 0.996 | 0.977 | 0.711 | 0.0 |
| >gi|255566464|ref|XP_002524217.1| ATP binding protein, putative [Ricinus communis] gi|223536494|gb|EEF38141.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/680 (73%), Positives = 568/680 (83%), Gaps = 25/680 (3%)
Query: 1 MKNPLSNTDLFK------LSALLFVSFTFFYLGKRWS-DGNQRILFFSSYTSSRTSQQNG 53
MK+ +N DL K ++A +S TFFYLGK WS +G Q+++FFS+ T S
Sbjct: 1 MKSLNTNMDLLKTPLVLKITAFCLLSITFFYLGKHWSSNGYQQLIFFSTPTES------- 53
Query: 54 YVSLSPNLNKSFDISSLISQNQSLASP-----YIVPSPAPVDPLPPPPPPPPPERFGIVN 108
VS+SPNLNK F+I+ LI+QNQS P + P+PAP+D FG+++
Sbjct: 54 -VSISPNLNKPFNITDLIAQNQSQIVPDKTQNVVSPTPAPIDQNSVGSDSDSNRTFGVID 112
Query: 109 EDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKS---FK-ITRYEMCPGSMREYIPCLD 164
DG M+DDFE+GE+DP++VE+ W + E+ S FK I R+++CP SMRE IPCLD
Sbjct: 113 SDGKMTDDFEVGEFDPEIVES-WGNESGVVESGDSDVKFKGIKRFDLCPESMRERIPCLD 171
Query: 165 NVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSR 224
NVEAIK+LKST++GE+FERHCP G GLNCLVP PKGYK PIPWPRSR+EVW++NVPHSR
Sbjct: 172 NVEAIKELKSTERGEKFERHCPQEGKGLNCLVPPPKGYKQPIPWPRSRDEVWFSNVPHSR 231
Query: 225 LVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCG 284
LVEDKGGQNWI KEK+KFKFPGGGTQFIHGADQYL+QI+KMVP+I +G H RVV+D GCG
Sbjct: 232 LVEDKGGQNWIYKEKNKFKFPGGGTQFIHGADQYLNQISKMVPEIAFGSHTRVVLDVGCG 291
Query: 285 VASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 344
VASFGAYLL RNV+TMS+APKDVHENQIQFALERG PAMV AFAT RL YPSQAF++IHC
Sbjct: 292 VASFGAYLLSRNVLTMSVAPKDVHENQIQFALERGVPAMVVAFATHRLLYPSQAFEIIHC 351
Query: 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWEL 404
SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE EE W+EML+LTTRLCW L
Sbjct: 352 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEAILEEQWEEMLNLTTRLCWTL 411
Query: 405 VKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGAN 464
VKKEGYIAIW+KP NNSCYL+RE GT PPLCDPDDNPDNVWYVDLKACITRLPE+GYGAN
Sbjct: 412 VKKEGYIAIWQKPINNSCYLSREEGTKPPLCDPDDNPDNVWYVDLKACITRLPEDGYGAN 471
Query: 465 VSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLD 524
++ WP RL T PDRLQSIQLDA+I+RKELFKAESKYW EII YVRA HWKK KLRNVLD
Sbjct: 472 ITTWPARLHTPPDRLQSIQLDAYISRKELFKAESKYWYEIIAGYVRAWHWKKFKLRNVLD 531
Query: 525 MRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYD 584
M+AGFGGFAAALI+Q+FDCWV+NVVP+SG NTLPVIYDRGL+GVMHDWCEPFDTYPRTYD
Sbjct: 532 MKAGFGGFAAALIDQQFDCWVLNVVPISGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYD 591
Query: 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR 644
LLHA GLFS+E KRC++STIMLEMDR+LRPGG YIRD++DVMDELQE KAMGWHV L
Sbjct: 592 LLHANGLFSIEKKRCSISTIMLEMDRILRPGGRAYIRDTLDVMDELQETAKAMGWHVALH 651
Query: 645 ETAEGPHASYRILTADKRLL 664
+T+EGPHASYRILT DKRLL
Sbjct: 652 DTSEGPHASYRILTCDKRLL 671
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101039|ref|XP_002312116.1| predicted protein [Populus trichocarpa] gi|222851936|gb|EEE89483.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/670 (73%), Positives = 562/670 (83%), Gaps = 19/670 (2%)
Query: 4 PLSNTDL------FKLSALLFVSFTFFYLGKRWSDGN-QRILFFSSYTSSRTSQQNGYVS 56
PL+NTDL K++A +S TFFYLGK WS+G Q++LFFS+ +S +S
Sbjct: 3 PLTNTDLIKTPLILKITAFTLISITFFYLGKHWSNGGYQQLLFFSTPQNS--------IS 54
Query: 57 LSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPER-FGIVNEDGTMSD 115
+SPN ++SF+I+ L+S NQS + + P P P P P R FGI++ DG MSD
Sbjct: 55 ISPNNDRSFNITPLVSLNQSEQP--LTDQATTISPPPDESPLPDPNRTFGIIDSDGKMSD 112
Query: 116 DFEIGEYDPDLVETEWNGDRNGTEATKS-FKITRYEMCPGSMREYIPCLDNVEAIKQLKS 174
DFE GE+DPD+VE NG + + S F+ RYE+CP SMREYIPCLDNV+A+K+LKS
Sbjct: 113 DFEAGEFDPDIVENWGNGSEIESGSKDSRFRAERYELCPVSMREYIPCLDNVKALKRLKS 172
Query: 175 TDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNW 234
T+KGERFERHCP G LNCLVP PKGY+ PIPWPRSR+EVWY+NVPHSRLVEDKGGQNW
Sbjct: 173 TEKGERFERHCPEKGDELNCLVPPPKGYRPPIPWPRSRDEVWYSNVPHSRLVEDKGGQNW 232
Query: 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP 294
ISK KDKF FPGGGTQFIHGAD+YLDQI++MVPDI +G H RVV+D GCGVASFGAYLL
Sbjct: 233 ISKAKDKFTFPGGGTQFIHGADKYLDQISEMVPDIAFGRHTRVVLDVGCGVASFGAYLLS 292
Query: 295 RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354
R+V+TMSIAPKDVHENQIQFALERG PAMVAAFAT RLPYPSQAF+LIHCSRCRINWTRD
Sbjct: 293 RDVMTMSIAPKDVHENQIQFALERGVPAMVAAFATHRLPYPSQAFELIHCSRCRINWTRD 352
Query: 355 DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414
DGILLLEVNRMLRAGGYFAWAAQPVYKHE+ EE W+EML+LTTRLCWELVKKEGYIAIW
Sbjct: 353 DGILLLEVNRMLRAGGYFAWAAQPVYKHEQVLEEQWEEMLNLTTRLCWELVKKEGYIAIW 412
Query: 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRT 474
+KP NNSCYL+R+ G P LCD DD+PDNVWYVDLKACI+RLPENGYGANVS+WP RL T
Sbjct: 413 QKPLNNSCYLSRDTGAKPHLCDSDDDPDNVWYVDLKACISRLPENGYGANVSMWPSRLHT 472
Query: 475 SPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAA 534
PDRLQSIQ ++FIARKEL KAE+K+W+E I YVRA HWKK KLRNV+DM+AGFGGFAA
Sbjct: 473 PPDRLQSIQYESFIARKELLKAENKFWSETIAGYVRAWHWKKFKLRNVMDMKAGFGGFAA 532
Query: 535 ALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594
ALIEQ FDCWV+NVVPVSG NTLPV+YDRGL+GVMHDWCEPFDTYPRTYDLLHAAGLFSV
Sbjct: 533 ALIEQGFDCWVLNVVPVSGSNTLPVLYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSV 592
Query: 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASY 654
E KRCNMSTIMLEMDR+LRPGG YIRD++DVMDELQ+I K +GW T+R+T+EGPHASY
Sbjct: 593 ERKRCNMSTIMLEMDRILRPGGRAYIRDTLDVMDELQQIAKVVGWEATVRDTSEGPHASY 652
Query: 655 RILTADKRLL 664
RILT DKRLL
Sbjct: 653 RILTCDKRLL 662
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465844|ref|XP_004150637.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] gi|449516433|ref|XP_004165251.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/676 (71%), Positives = 563/676 (83%), Gaps = 17/676 (2%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVSLSPNLN 62
+ L + +FK+SAL+ +S TFFYLGK WSDG +++FF+ T VS+SPN +
Sbjct: 8 DSLKSPSIFKISALILISLTFFYLGKHWSDGYPQLIFFTE-----TRYPPPSVSISPNHD 62
Query: 63 KSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPP----------ERFGIVNEDGT 112
F++SSLI N + +P S A P P PP +RFGIV+E+GT
Sbjct: 63 TLFNVSSLIELNLTREAPEKPLSSASAPLPSPILPSSPPPPTPPPSDSVQRFGIVDENGT 122
Query: 113 MSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKI--TRYEMCPGSMREYIPCLDNVEAIK 170
M+D+FE+G+ DP+L E N +GT+ + S KI ++ +CP SMREYIPCLDNV+AIK
Sbjct: 123 MADEFEVGDLDPELTENWGNETESGTDESGSAKIRIKKFALCPKSMREYIPCLDNVDAIK 182
Query: 171 QLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKG 230
QLKST+KGE+FERHCP +G GL+CLVPAPKGYK PIPWPRSR+EVW+NNVPH+RLV+DKG
Sbjct: 183 QLKSTEKGEKFERHCPDSGGGLSCLVPAPKGYKMPIPWPRSRDEVWFNNVPHTRLVDDKG 242
Query: 231 GQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGA 290
GQNWIS++KDKFKFPGGGTQFIHGA++YLD I+K+VPD+ +G H RVV+D GCGVASFGA
Sbjct: 243 GQNWISRDKDKFKFPGGGTQFIHGANEYLDHISKIVPDVAFGSHTRVVLDIGCGVASFGA 302
Query: 291 YLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350
YLL RNV+TMSIAPKDVHENQIQFALERG PAMVAAF+TRRL YPSQAFDLIHCSRCRIN
Sbjct: 303 YLLSRNVVTMSIAPKDVHENQIQFALERGVPAMVAAFSTRRLLYPSQAFDLIHCSRCRIN 362
Query: 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410
WTRDDG+LLLEV+RMLRAGGYFAWAAQPVYKHEEA E+ W+EM++LTTRLCW+ VKK+GY
Sbjct: 363 WTRDDGVLLLEVDRMLRAGGYFAWAAQPVYKHEEALEQQWEEMINLTTRLCWKFVKKDGY 422
Query: 411 IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPE 470
IAIW+KP NNSCYL R+A PPLCD DD+PD VWYV LK CITRLPENG+G NV+ WP
Sbjct: 423 IAIWQKPMNNSCYLTRDAEVKPPLCDIDDDPDKVWYVKLKPCITRLPENGFGRNVTKWPA 482
Query: 471 RLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFG 530
RL+T PDRLQSIQ DA+I+R ELF AESKYWNEII SYVRALHWKK++LRNV+DMRAGFG
Sbjct: 483 RLQTPPDRLQSIQYDAYISRNELFTAESKYWNEIIGSYVRALHWKKIRLRNVMDMRAGFG 542
Query: 531 GFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAG 590
GFAAALI+ K D WVMNVVPVSG NTLPVIYDRGL+GV+HDWCEPFDTYPRTYDLLHAAG
Sbjct: 543 GFAAALIDHKLDSWVMNVVPVSGPNTLPVIYDRGLLGVLHDWCEPFDTYPRTYDLLHAAG 602
Query: 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGP 650
LFSVE +RC+MSTIMLEMDR+LRPGG VY+RD++ VMDELQ IGKAMGW V+LR+T+EGP
Sbjct: 603 LFSVEMRRCSMSTIMLEMDRILRPGGRVYVRDTVAVMDELQAIGKAMGWRVSLRDTSEGP 662
Query: 651 HASYRILTADKRLLHA 666
HASYRIL +KRLLH
Sbjct: 663 HASYRILIGEKRLLHT 678
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109464|ref|XP_002315205.1| predicted protein [Populus trichocarpa] gi|222864245|gb|EEF01376.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/674 (74%), Positives = 566/674 (83%), Gaps = 22/674 (3%)
Query: 4 PLSNTD------LFKLSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYVS 56
PL NTD + K++A +S TFFYLGK WS+ G Q++LFFS+ +S +S
Sbjct: 3 PLINTDFIKTPQILKITAFALISITFFYLGKHWSNSGYQQLLFFSTPQNS--------IS 54
Query: 57 LSPNLNKSFDISSLISQNQSLASPY---IVPSPAPVDPLPPPPPPPPPER-FGIVNEDGT 112
+SPN +KSF+I+SLI NQS P I P+P + P P P P R FGI++ DG
Sbjct: 55 ISPNNDKSFNITSLIPPNQSDHPPTEQAINPTPPSIYPPPDESPLSDPNRTFGIIDSDGK 114
Query: 113 MSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKIT--RYEMCPGSMREYIPCLDNVEAIK 170
M+DDFE+GE+DPD+ E W + A+ +FK+ +YE+CPGSMREYIPCLDNVEAIK
Sbjct: 115 MTDDFEVGEFDPDIAEN-WGNETEIESASTNFKVRVRKYELCPGSMREYIPCLDNVEAIK 173
Query: 171 QLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKG 230
+LK T+KGERFERHCP G GLNCLVP PKGY+ PIPWPRSR+EVWY+NVPH+RL +DKG
Sbjct: 174 RLKLTEKGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPRSRDEVWYSNVPHTRLADDKG 233
Query: 231 GQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGA 290
GQNWISKEK+KFKFPGGGTQFIHGAD+YLDQIA+MVPDIT+GHH R+++D GCGVASFGA
Sbjct: 234 GQNWISKEKEKFKFPGGGTQFIHGADKYLDQIAQMVPDITFGHHTRMILDVGCGVASFGA 293
Query: 291 YLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350
YLL RNV+TMSIAPKDVHENQIQFALERG PAMVAAFAT RL YPSQAF+LIHCSRCRIN
Sbjct: 294 YLLSRNVMTMSIAPKDVHENQIQFALERGVPAMVAAFATHRLLYPSQAFELIHCSRCRIN 353
Query: 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410
WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE EE W EML+LTT LCWELVKKEGY
Sbjct: 354 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEHVLEEQWAEMLNLTTHLCWELVKKEGY 413
Query: 411 IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPE 470
IAIWKKP NN+CYL+R+ G IPPLCDPDD+PDNVWYVDLKACI+RLPENGYGANV WP
Sbjct: 414 IAIWKKPLNNNCYLSRDTGAIPPLCDPDDDPDNVWYVDLKACISRLPENGYGANVPTWPS 473
Query: 471 RLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFG 530
RL T PDRLQSIQ +++IARKEL KAE+K+W+E I YVRA HWKK KLRNV+DM+AGFG
Sbjct: 474 RLHTPPDRLQSIQYESYIARKELLKAENKFWSETIAGYVRAWHWKKFKLRNVMDMKAGFG 533
Query: 531 GFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAG 590
GFAAALI+Q FDCWV+NVVPVSG NTLPV+YDRGL+GVMHDWCEPFDTYPRTYDLLHAAG
Sbjct: 534 GFAAALIDQGFDCWVLNVVPVSGSNTLPVLYDRGLLGVMHDWCEPFDTYPRTYDLLHAAG 593
Query: 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGP 650
LFSVE KRCNMSTIMLEMDR+LRPGG VYIRDS+DVMDEL +I KAMGW T R+T+EGP
Sbjct: 594 LFSVERKRCNMSTIMLEMDRILRPGGRVYIRDSLDVMDELLQIAKAMGWQATSRDTSEGP 653
Query: 651 HASYRILTADKRLL 664
HASYRILT DKRLL
Sbjct: 654 HASYRILTCDKRLL 667
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827583|ref|XP_002881674.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297327513|gb|EFH57933.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/696 (69%), Positives = 561/696 (80%), Gaps = 42/696 (6%)
Query: 4 PLSNTDLFK------LSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYVS 56
PL N DL K +SAL+FV+ FFYLGK WSD G Q+++FFSS TS + + VS
Sbjct: 3 PLPNGDLLKSPTLIKISALVFVTVAFFYLGKHWSDDGYQQLVFFSSSTSRSSIPE---VS 59
Query: 57 LSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPP--------------------P 96
+SPN N+ F++S++I N + + PA + PP P
Sbjct: 60 VSPNSNRVFNLSAIIPTNHTE-----IEIPATIQQQPPSVVKVEANPPPPPPSPPPPSPP 114
Query: 97 PPPPPERFGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKS------FKITRYE 150
PP P + FGIV+E+G MSDDFE+GE + D VE +W EA + +I ++
Sbjct: 115 PPGPVKSFGIVDENGVMSDDFEVGEVESDTVE-DWGNQTEIVEAKRDGDSKARVRIKKFG 173
Query: 151 MCPGSMREYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPR 210
MCP SMREYIPCLDN +AIK+LKST++GERFERHCP G GLNCLVP PKGY+ PIPWP+
Sbjct: 174 MCPESMREYIPCLDNTDAIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPK 233
Query: 211 SRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDIT 270
SR+EVW++NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KMV DIT
Sbjct: 234 SRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDIT 293
Query: 271 WGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330
+G HIRV MD GCGVASFGAYLL R+V+T+S+APKDVHENQIQFALERG PAM AAFATR
Sbjct: 294 FGKHIRVAMDVGCGVASFGAYLLSRDVLTLSVAPKDVHENQIQFALERGVPAMAAAFATR 353
Query: 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390
RL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE W
Sbjct: 354 RLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQW 413
Query: 391 KEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLK 450
EML+LTT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD ++PDNVWY +LK
Sbjct: 414 TEMLNLTTSLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESEDPDNVWYTNLK 473
Query: 451 ACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVR 510
CI+R+PENGYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YVR
Sbjct: 474 PCISRIPENGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVR 533
Query: 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH 570
AL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVMH
Sbjct: 534 ALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMH 593
Query: 571 DWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDEL 630
DWCEPFDTYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSIDVMDE+
Sbjct: 594 DWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEI 653
Query: 631 QEIGKAMGWHVTLRETAEGPHASYRILTADKRLLHA 666
QEI KAMGWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 654 QEITKAMGWHTSLRDTSEGPHASYRILTCEKRLLRA 689
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18405149|ref|NP_030521.1| putative methyltransferase PMT11 [Arabidopsis thaliana] gi|75097411|sp|O22285.1|PMTB_ARATH RecName: Full=Probable methyltransferase PMT11 gi|2642157|gb|AAB87124.1| expressed protein [Arabidopsis thaliana] gi|15450749|gb|AAK96646.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gi|21700885|gb|AAM70566.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gi|330254624|gb|AEC09718.1| putative methyltransferase PMT11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/701 (68%), Positives = 556/701 (79%), Gaps = 45/701 (6%)
Query: 3 NPLSNTDLFK------LSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYV 55
PL+N DLFK +SAL+FV+ FFYLGK WSD G Q+++FFSS TS + + V
Sbjct: 2 KPLTNGDLFKSPTLIKISALVFVTVAFFYLGKHWSDDGYQQLVFFSSSTSGSSIPE---V 58
Query: 56 SLSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPE------------- 102
S+SPN N+ F++S++I N + + PA + PP +
Sbjct: 59 SVSPNSNRVFNLSAIIPTNHTQ-----IEIPATIRQQPPSVVADTEKVKVEANPPPPPPP 113
Query: 103 ------------RFGIVNEDGTMSDDFEIGEYDPDLVE-----TEWNGDRNGTEATKSFK 145
FGIV+ +G MSDDFE+GE + D VE TE ++ ++ +
Sbjct: 114 SPSPPPPPGPVKSFGIVDANGVMSDDFEVGEVESDTVEDWGNQTEIVEAKSDGDSKARVR 173
Query: 146 ITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTP 205
I ++ MCP SMREYIPCLDN + IK+LKST++GERFERHCP G GLNCLVP PKGY+ P
Sbjct: 174 IKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQP 233
Query: 206 IPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKM 265
IPWP+SR+EVW++NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KM
Sbjct: 234 IPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKM 293
Query: 266 VPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVA 325
V DIT+G HIRV MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM A
Sbjct: 294 VSDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAA 353
Query: 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385
AFATRRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A
Sbjct: 354 AFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPA 413
Query: 386 QEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVW 445
EE W EML+LT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD D+PDNVW
Sbjct: 414 LEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVW 473
Query: 446 YVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII 505
Y +LK CI+R+PE GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII
Sbjct: 474 YTNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEII 533
Query: 506 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL 565
YVRAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL
Sbjct: 534 GGYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGL 593
Query: 566 IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 625
+GVMHDWCEPFDTYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSID
Sbjct: 594 LGVMHDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSID 653
Query: 626 VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKRLLHA 666
VMDE+QEI KAMGWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 654 VMDEIQEITKAMGWHTSLRDTSEGPHASYRILTCEKRLLRA 694
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569344|ref|XP_003552862.1| PREDICTED: probable methyltransferase PMT11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/670 (70%), Positives = 552/670 (82%), Gaps = 16/670 (2%)
Query: 1 MKNPLSNTDLFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVSLSPN 60
++ PL+ K++A F++ TFFY GK WSDG Q+++FF+ S S N +VS SPN
Sbjct: 6 LRTPLT----LKIAAFFFIAVTFFYFGKHWSDGYQQLVFFTQ-RSDPDSNSNPFVSTSPN 60
Query: 61 LNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIG 120
KSF++S+LI N A P P P + E+ G+VNE+GTMSD+FE+G
Sbjct: 61 NAKSFNVSALIENNTQPAPPENAPPPPAPEE-------GSIEKLGVVNENGTMSDEFEVG 113
Query: 121 EYDPDLVETEWN----GDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKSTD 176
++DP +V+ N + G+ + F I ++ +CP M EYIPCLDN + I++L ST+
Sbjct: 114 DFDPGMVDQWVNETQVDESEGSSSDVGFGIKKFGLCPREMSEYIPCLDNEDEIRKLPSTE 173
Query: 177 KGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWIS 236
KGERFERHCP G GLNCLVPAP GY+TPIPWPRSR+EVWYNNVPH+RLVEDKGGQNWIS
Sbjct: 174 KGERFERHCPEQGRGLNCLVPAPNGYRTPIPWPRSRDEVWYNNVPHTRLVEDKGGQNWIS 233
Query: 237 KEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRN 296
++KDKFKFPGGGTQFIHGA++YLD I+KM+PDIT+G HIRVV+D GCGVASFGAYLL RN
Sbjct: 234 RDKDKFKFPGGGTQFIHGANEYLDHISKMIPDITFGKHIRVVLDVGCGVASFGAYLLSRN 293
Query: 297 VITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG 356
V+TMS+APKDVHENQIQFALERG PAM AAFATRRL YPSQAFDL+HCSRCRINWTRDDG
Sbjct: 294 VVTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLVHCSRCRINWTRDDG 353
Query: 357 ILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKK 416
ILLLEVNRMLRAGGYF WAAQPVYKHEE EE W+EML+LTTRLCW +KK+GYIA+W+K
Sbjct: 354 ILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWEEMLNLTTRLCWNFLKKDGYIAVWQK 413
Query: 417 PTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSP 476
P++NSCY +REAGT PP+CDP D+PDNVWYVDLKACI+ LP+NGYGANV+ WP RL+T P
Sbjct: 414 PSDNSCYRDREAGTKPPMCDPSDDPDNVWYVDLKACISELPKNGYGANVTEWPARLQTPP 473
Query: 477 DRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAAL 536
DRLQSI+LDAF +R ELF+AESKYWNEII SYVR LHWK+++LRNV+DMRAGFGGFAAAL
Sbjct: 474 DRLQSIKLDAFTSRSELFRAESKYWNEIIASYVRVLHWKEIRLRNVMDMRAGFGGFAAAL 533
Query: 537 IEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596
I Q D WVMNVVPVSG NTLPVIYDRGLIGVMHDWCE FDTYPRTYDLLHAA L SVE
Sbjct: 534 INQNLDSWVMNVVPVSGPNTLPVIYDRGLIGVMHDWCEAFDTYPRTYDLLHAANLLSVEK 593
Query: 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRI 656
KRCN+S+IMLEMDR+LRPGG VYIRDS+D+MDELQEI KA+GW+V LR+T EGPHASYR+
Sbjct: 594 KRCNVSSIMLEMDRILRPGGRVYIRDSLDIMDELQEIAKAIGWYVMLRDTEEGPHASYRV 653
Query: 657 LTADKRLLHA 666
L DK LL +
Sbjct: 654 LVCDKHLLRS 663
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449394|ref|XP_002282557.1| PREDICTED: probable methyltransferase PMT11 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/682 (71%), Positives = 560/682 (82%), Gaps = 22/682 (3%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNG--YVSLSPN 60
+P L +S + VSF FFY+GK WS+G Q+++F YTS +T +G + +SPN
Sbjct: 8 DPRRAPSLLTISTFVVVSFAFFYVGKHWSNGYQQLIF---YTSRQTPMASGAPTIGISPN 64
Query: 61 LNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPP-------------PPPPPERFGIV 107
N +FD+SS+I++NQ+L S P+P PP P + FGIV
Sbjct: 65 FNMTFDVSSMIAKNQTLDSTLPSPAPISSPAPAPPAPIPSPAPAPPAHLAPGSIKTFGIV 124
Query: 108 NEDGTMSDDFEIGEYDPDLVETEWNGD--RNGTEATKSFK--ITRYEMCPGSMREYIPCL 163
+E+GTM+++FE+G+YDP+ VE NG G + SF+ I +++MCP +MREYIPCL
Sbjct: 125 DENGTMAEEFEVGDYDPEFVENWGNGSDAEVGGSSGGSFRFGIKKFKMCPETMREYIPCL 184
Query: 164 DNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHS 223
DN EAI+ LKST GE+FERHCP GLNCLVPAPKGY+TPIPWP+SR+EVW++NVPH+
Sbjct: 185 DNEEAIRNLKSTKNGEKFERHCPERSRGLNCLVPAPKGYRTPIPWPKSRDEVWFSNVPHT 244
Query: 224 RLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGC 283
+LVEDKGGQNWIS +K+KFKFPGGGTQFIHGADQYLDQI+KMVPDI +G H RVV+D GC
Sbjct: 245 KLVEDKGGQNWISVDKNKFKFPGGGTQFIHGADQYLDQISKMVPDIAFGRHTRVVLDVGC 304
Query: 284 GVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 343
GVASFGAYLL RNVIT+SIAPKDVHENQIQFALERG PAMVAAF TRRL YPSQAFDLIH
Sbjct: 305 GVASFGAYLLSRNVITLSIAPKDVHENQIQFALERGVPAMVAAFVTRRLLYPSQAFDLIH 364
Query: 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWE 403
CSRCRI+WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE EE WKEM++LTTRLCWE
Sbjct: 365 CSRCRIDWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEENLEEQWKEMVNLTTRLCWE 424
Query: 404 LVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 463
LVKKEGYIAIW+KP NNSCYLNR+A T PPLCDPDD+PD+VWYVDLKACITRLPE+GYGA
Sbjct: 425 LVKKEGYIAIWQKPFNNSCYLNRKAATKPPLCDPDDDPDDVWYVDLKACITRLPEDGYGA 484
Query: 464 NVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVL 523
N+ WP RL+ PDRLQSI++DA+I+RKELFKAE KYW EII+ Y R L WK KLRNVL
Sbjct: 485 NLPTWPGRLQNYPDRLQSIRMDAYISRKELFKAEYKYWKEIIDGYYRVLKWKNFKLRNVL 544
Query: 524 DMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTY 583
DMRAGFGGFAAAL E+K DCWV+NVVPVSG NTLPVIYDRGLIGVMHDWCE FDTYPRTY
Sbjct: 545 DMRAGFGGFAAALTERKVDCWVLNVVPVSGPNTLPVIYDRGLIGVMHDWCESFDTYPRTY 604
Query: 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643
D LHAAGLFS+E KRCNMS+IMLEMDR+LRPGGH YIRDSI VMDELQEI KAMGW V++
Sbjct: 605 DFLHAAGLFSIERKRCNMSSIMLEMDRILRPGGHAYIRDSIIVMDELQEIAKAMGWKVSV 664
Query: 644 RETAEGPHASYRILTADKRLLH 665
R T+EGPHASYRILT +KR+LH
Sbjct: 665 RPTSEGPHASYRILTCEKRMLH 686
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441370|ref|XP_004138455.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/675 (70%), Positives = 563/675 (83%), Gaps = 11/675 (1%)
Query: 3 NPLSNTD------LFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVS 56
+ LSN D LFK+ + LF++ TFFY GK WSDG Q+++FFS+ +++TS +
Sbjct: 4 DSLSNGDSFRFPSLFKILSFLFLALTFFYFGKHWSDGYQQLIFFSTTATTQTSSSSSSSV 63
Query: 57 LS-PNLNKSFDISSLISQN--QSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTM 113
PN NK FDIS+LI N Q++ + P P PPPPP +RFGIV+E+GTM
Sbjct: 64 SLSPNYNKHFDISNLIDNNDTQTIPDHTLNLDPTPSPFNPPPPPSDSVQRFGIVDENGTM 123
Query: 114 SDDFEIGEYDPDLVETEWNGDR--NGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQ 171
SD FE+G++DP+ V+ N + +G T+SF+IT++ +CP +M EYIPCLDN +AI +
Sbjct: 124 SDQFEVGDFDPEYVDNWGNSTQVDDGDGGTRSFRITKFGLCPQNMSEYIPCLDNADAIAK 183
Query: 172 LKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGG 231
L+ST++GE+FERHCP G +CL+P P GY+TPIPWPRSR+EVW++NVPH+RLVEDKGG
Sbjct: 184 LESTERGEKFERHCPDAGRAFDCLIPPPNGYQTPIPWPRSRDEVWFSNVPHTRLVEDKGG 243
Query: 232 QNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAY 291
QNWI+++KDKF+FPGGGTQFIHGAD+YLD I+KM+PDI +G H RVV+D GCGVASFGAY
Sbjct: 244 QNWITRDKDKFRFPGGGTQFIHGADEYLDHISKMIPDIAFGLHTRVVLDIGCGVASFGAY 303
Query: 292 LLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351
LL RNVITMSIAPKDVHENQIQFALERG PAMV+AFAT RL YPSQAFDLIHCSRCRINW
Sbjct: 304 LLSRNVITMSIAPKDVHENQIQFALERGVPAMVSAFATHRLLYPSQAFDLIHCSRCRINW 363
Query: 352 TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYI 411
TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE EE W+EML+LTTRLCWE VKK+GYI
Sbjct: 364 TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEVLEEQWEEMLNLTTRLCWEFVKKDGYI 423
Query: 412 AIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPER 471
AIW+KP NNSCYLNREA T PPLCD +D+PD VW V+LK CI+RLPE+G+G N+S WP R
Sbjct: 424 AIWRKPLNNSCYLNREAATKPPLCDQNDDPDRVWNVNLKPCISRLPEDGFGGNISDWPAR 483
Query: 472 LRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGG 531
L T P RLQ+IQ DA+I+R ELFKAESKYWNEII+SYVRA HWK +LRNV+DM+AGFGG
Sbjct: 484 LHTPPGRLQTIQYDAYISRNELFKAESKYWNEIIDSYVRAFHWKSFRLRNVMDMKAGFGG 543
Query: 532 FAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGL 591
FAAALI+ K DCWV+NVVPVSG NTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGL
Sbjct: 544 FAAALIDLKLDCWVLNVVPVSGSNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGL 603
Query: 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPH 651
FSVE KRCNMSTIMLEMDR+LRPGG VYIRDS+ VMDELQ+IGKAMGWHV +R+T+EGPH
Sbjct: 604 FSVERKRCNMSTIMLEMDRILRPGGRVYIRDSVAVMDELQDIGKAMGWHVNVRDTSEGPH 663
Query: 652 ASYRILTADKRLLHA 666
ASY+I+ ADK LL A
Sbjct: 664 ASYKIMMADKILLKA 678
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449476436|ref|XP_004154736.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/676 (71%), Positives = 566/676 (83%), Gaps = 12/676 (1%)
Query: 3 NPLSNTD------LFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVS 56
+ LSN D LFK+ + LF++ TFFY GK WSDG Q+++FFS+ +++TS + S
Sbjct: 4 DSLSNGDSFRFPSLFKILSFLFLALTFFYFGKHWSDGYQQLIFFSTTATTQTSSSSSSSS 63
Query: 57 LS--PNLNKSFDISSLISQN--QSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGT 112
+S PN NK FDIS+LI N Q++ + P P PPPPP +RFGIV+E+GT
Sbjct: 64 VSLSPNYNKHFDISNLIDNNDTQTIPDHTLNLDPTPSPFNPPPPPSDSVQRFGIVDENGT 123
Query: 113 MSDDFEIGEYDPDLVETEWNGDR--NGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIK 170
MSD FE+G++DP+ V+ N + +G T+SF+IT++ +CP +M EYIPCLDN +AI
Sbjct: 124 MSDQFEVGDFDPEYVDNWGNSTQVDDGDGGTRSFRITKFGLCPQNMSEYIPCLDNADAIA 183
Query: 171 QLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKG 230
+L+ST++GE+FERHCP G +CL+P P GY+TPIPWPRSR+EVW++NVPH+RLVEDKG
Sbjct: 184 KLESTERGEKFERHCPDAGRAFDCLIPPPNGYQTPIPWPRSRDEVWFSNVPHTRLVEDKG 243
Query: 231 GQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGA 290
GQNWI+++KDKF+FPGGGTQFIHGAD+YLD I+KM+PDI +G H RVV+D GCGVASFGA
Sbjct: 244 GQNWITRDKDKFRFPGGGTQFIHGADEYLDHISKMIPDIAFGLHTRVVLDIGCGVASFGA 303
Query: 291 YLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350
YLL RNVITMSIAPKDVHENQIQFALERG PAMV+AFAT RL YPSQAFDLIHCSRCRIN
Sbjct: 304 YLLSRNVITMSIAPKDVHENQIQFALERGVPAMVSAFATHRLLYPSQAFDLIHCSRCRIN 363
Query: 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410
WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE EE W+EML+LTTRLCWE VKK+GY
Sbjct: 364 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEVLEEQWEEMLNLTTRLCWEFVKKDGY 423
Query: 411 IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPE 470
IAIW+KP NNSCYLNREA T PPLCD +D+PD VW V+LK CI+RLPE+G+G N+S WP
Sbjct: 424 IAIWRKPLNNSCYLNREAATKPPLCDQNDDPDRVWNVNLKPCISRLPEDGFGGNISDWPA 483
Query: 471 RLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFG 530
RL T P RLQ+IQ DA+I+R ELFKAESKYWNEII+SYVRA HWK +LRNV+DM+AGFG
Sbjct: 484 RLHTPPGRLQTIQYDAYISRNELFKAESKYWNEIIDSYVRAFHWKSFRLRNVMDMKAGFG 543
Query: 531 GFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAG 590
GFAAALI+ K DCWV+NVVPVSG NTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAG
Sbjct: 544 GFAAALIDLKLDCWVLNVVPVSGSNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAG 603
Query: 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGP 650
LFSVE KRCNMSTIMLEMDR+LRPGG VYIRDS+ VMDELQ+IGKAMGWHV +R+T+EGP
Sbjct: 604 LFSVERKRCNMSTIMLEMDRILRPGGRVYIRDSVAVMDELQDIGKAMGWHVNVRDTSEGP 663
Query: 651 HASYRILTADKRLLHA 666
HASY+I+ ADK LL A
Sbjct: 664 HASYKIMMADKILLKA 679
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 666 | ||||||
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.843 | 0.809 | 0.755 | 2.3e-260 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.971 | 0.948 | 0.678 | 6.2e-252 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.839 | 0.853 | 0.690 | 4.8e-229 | |
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.773 | 0.621 | 0.467 | 5.9e-128 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.786 | 0.680 | 0.457 | 8.7e-127 | |
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.729 | 0.543 | 0.478 | 2.9e-126 | |
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.725 | 0.820 | 0.473 | 9.9e-126 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.779 | 0.674 | 0.453 | 1.6e-125 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.755 | 0.807 | 0.455 | 4.5e-124 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.803 | 0.875 | 0.441 | 2.4e-122 |
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2358 (835.1 bits), Expect = 2.3e-260, Sum P(2) = 2.3e-260
Identities = 430/569 (75%), Positives = 485/569 (85%)
Query: 104 FGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEA-----TKS-FKITRYEMCPGSMR 157
FGIV+ +G MSDDFE+GE + D VE +W EA +K+ +I ++ MCP SMR
Sbjct: 127 FGIVDANGVMSDDFEVGEVESDTVE-DWGNQTEIVEAKSDGDSKARVRIKKFGMCPESMR 185
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
EYIPCLDN + IK+LKST++GERFERHCP G GLNCLVP PKGY+ PIPWP+SR+EVW+
Sbjct: 186 EYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWF 245
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KMV DIT+G HIRV
Sbjct: 246 SNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDITFGKHIRV 305
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM AAFATRRL YPSQ
Sbjct: 306 AMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQ 365
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
AFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE W EML+LT
Sbjct: 366 AFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLT 425
Query: 398 TRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLP 457
LCW+LVKKEGY+AIW+KP NN CYL+REAGT VWY +LK CI+R+P
Sbjct: 426 ISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIP 485
Query: 458 ENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKM 517
E GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YVRAL WKKM
Sbjct: 486 EKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKWKKM 545
Query: 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD 577
KLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVMHDWCEPFD
Sbjct: 546 KLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFD 605
Query: 578 TYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM 637
TYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSIDVMDE+QEI KAM
Sbjct: 606 TYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAM 665
Query: 638 GWHVTLRETAEGPHASYRILTADKRLLHA 666
GWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 666 GWHTSLRDTSEGPHASYRILTCEKRLLRA 694
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2426 (859.1 bits), Expect = 6.2e-252, P = 6.2e-252
Identities = 453/668 (67%), Positives = 536/668 (80%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWS-DGNQRILFFSSYTSSRTSQQNGYVSLSPNL 61
N L N+ FK+SA + +S F+LGK WS DG +R++FFS+ S ++ V+LSP+
Sbjct: 8 NLLRNSIFFKISAFVLISVACFFLGKHWSEDGFRRLIFFSAEPS-----RSPIVALSPDF 62
Query: 62 NKSFDISSLISQNQSLASPYIVXXXXXXXXXXXXXXXXXXERFGIVNEDGTMSDDFEIGE 121
K+++IS LI ++ + P + + FGIVNE+GTMSD+F+IG+
Sbjct: 63 GKTYNISGLIYESHPILPPSL--------SPPPPPDSVELKVFGIVNENGTMSDEFQIGD 114
Query: 122 YDPDLVET-------EWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKS 174
YD + ET E + D + T + ++E+C +M EYIPCLDNVEAIK+L S
Sbjct: 115 YDVESAETLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDNVEAIKRLNS 174
Query: 175 TDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNW 234
T +GERFER+CP +G GLNC VP P+GY++PIPWPRSR+EVW+NNVPH++LVEDKGGQNW
Sbjct: 175 TARGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNW 234
Query: 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP 294
I KE DKFKFPGGGTQFIHGADQYLDQI++M+PDI++G+H RVV+D GCGVASFGAYL+
Sbjct: 235 IYKENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 295 RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354
RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YPSQAFDL+HCSRCRINWTRD
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 355 DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414
DGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+LTTRLCW LVKKEGYIAIW
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 415 KKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGYGANVSLWPERLRT 474
+KP NN+CYL+R AG VWYVDLKACITR+ ENGYGAN++ WP RL T
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGYGANLAPWPARLLT 474
Query: 475 SPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAA 534
PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK++ LRNVLDMRAGFGGFAA
Sbjct: 475 PPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWKQIGLRNVLDMRAGFGGFAA 534
Query: 535 ALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594
AL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDWCEPFDTYPRTYDLLHAAGLFS+
Sbjct: 535 ALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSI 594
Query: 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASY 654
E KRCNM+T+MLEMDR+LRPGG VYIRD+I+V ELQEIG AM WH +LRETAEGPH+SY
Sbjct: 595 ERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETAEGPHSSY 654
Query: 655 RILTADKR 662
R+L +KR
Sbjct: 655 RVLLCEKR 662
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2195 (777.7 bits), Expect = 4.8e-229, Sum P(2) = 4.8e-229
Identities = 391/566 (69%), Positives = 463/566 (81%)
Query: 103 RFGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKS-----FKITRYEMCPGSMR 157
R GI+NE+G MSD FEIG +DPD ++ + N + K F+I + ++C +
Sbjct: 92 RTGIINENGAMSDSFEIGGFDPDSIDELKSATGNSSVEEKESPEVGFQIEKLKLCDKTKI 151
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN E IK+L +TD+GE +ERHCP L+CL+P P GYK PI WP+SR+++W+
Sbjct: 152 DYIPCLDNEEEIKRLNNTDRGENYERHCPKQS--LDCLIPPPDGYKKPIQWPQSRDKIWF 209
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NNVPH+RLVEDKGGQNWI +EKDKF FPGGGTQFIHGADQYLDQI++M+PDIT+G RV
Sbjct: 210 NNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMIPDITFGSRTRV 269
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
+D GCGVASFGA+L+ RN T+S+APKDVHENQIQFALERG PAMVA FATRRL YPSQ
Sbjct: 270 ALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQ 329
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
+F++IHCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+ +E WKEMLDLT
Sbjct: 330 SFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLT 389
Query: 398 TRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLP 457
R+CWEL+KKEGYIA+W+KP NNSCY++REAGT VWYVD+K CITRLP
Sbjct: 390 NRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLP 449
Query: 458 ENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKM 517
+NGYGANVS WP RL P+RLQSIQ+DA+I+RKE+ KAES++W E++ESYVR WK+
Sbjct: 450 DNGYGANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWKEF 509
Query: 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD 577
KLRNVLDMRAGFGGFAAAL + DCWVMN+VPVSGFNTLPVIYDRGL G MHDWCEPFD
Sbjct: 510 KLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFD 569
Query: 578 TYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM 637
TYPRTYDL+HAA LFSVE KRCN++ IMLEMDRMLRPGGHVYIRDS+ +MD+LQ++ KA+
Sbjct: 570 TYPRTYDLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAI 629
Query: 638 GWHVTLRETAEGPHASYRILTADKRL 663
GW + +T EGPHAS RIL DKR+
Sbjct: 630 GWTAGVHDTGEGPHASVRILICDKRI 655
|
|
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 250/535 (46%), Positives = 338/535 (63%)
Query: 129 TEWNGDRNGTEATKSF--KIT-RYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKGERFERH 184
T+ +N EA K K+ ++ +C + +YIPCLDNV+AI+ L ST E ERH
Sbjct: 275 TQATESKNEKEAQKGSGDKLDYKWALCNTTAGPDYIPCLDNVQAIRSLPSTKHYEHRERH 334
Query: 185 CPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKF 244
CP + CLVP P GYK PI WP+SR ++WY NVPH++L E KG QNW+ + F
Sbjct: 335 CP--DSPPTCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYLTF 392
Query: 245 PGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAP 304
PGGGTQF HGA Y+D I + VP I WG RVV+D GCGVASFG +L R+VITMS+AP
Sbjct: 393 PGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAP 452
Query: 305 KDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR 364
KD HE Q+QFALERG PA+ A T RLP+P + FD++HC+RCR+ W + G LLLE+NR
Sbjct: 453 KDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNR 512
Query: 365 MLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVK--KE---GY-IAIWKKPT 418
+LR GG+F W+A PVY+ + E WK M +L ++CWELV K+ G +A ++KPT
Sbjct: 513 VLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVATYRKPT 572
Query: 419 NNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY--GAN-VSLWPERLRTS 475
+N CY NR + W V L+AC+ PE+ G+ WP RL +
Sbjct: 573 SNECYKNRSE-PVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQWPARLEKA 631
Query: 476 PDRLQSIQLDAF-IARKELFKAESKYWNEII-ESYVRALHWKKMKLRNVLDMRAGFGGFA 533
P L S Q + A E F A+ ++W ++ +SY+ L +RNV+DMRA +GGFA
Sbjct: 632 PFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNVMDMRAVYGGFA 691
Query: 534 AALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFS 593
AAL + K WVMNVVP+ +TL +IY+RGL G+ HDWCE F TYPR+YDLLHA LFS
Sbjct: 692 AALRDLKV--WVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFS 749
Query: 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAE 648
+RCN++ ++ E+DR+LRP G + +RD + + +++ + KAM W V + + E
Sbjct: 750 KLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEVRMTYSKE 804
|
|
| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
Identities = 247/540 (45%), Positives = 339/540 (62%)
Query: 120 GEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKG 178
G + LVE++ + +K ++ C + +YIPCLDN +AIK+L +T
Sbjct: 211 GAWSTQLVESQNEKKAQQSSISKDQSSYGWKTCNVTAGPDYIPCLDNWQAIKKLHTTMHY 270
Query: 179 ERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKE 238
E ERHCP +CLV P GYK I WP+SR ++WYNNVPH++L E KG QNW+
Sbjct: 271 EHRERHCPEESP--HCLVSLPDGYKRSIKWPKSREKIWYNNVPHTKLAEIKGHQNWVKMS 328
Query: 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVI 298
+ FPGGGTQF +GA Y+D I + P I WG+ RV++D GCGVASFG YL R+V+
Sbjct: 329 GEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILDVGCGVASFGGYLFERDVL 388
Query: 299 TMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGIL 358
+S APKD HE Q+QFALERG PAM+ T+RLP+P FDLIHC+RCR+ W + G L
Sbjct: 389 ALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKL 448
Query: 359 LLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV--KKEGY----IA 412
LLE+NR LR GG+F W+A PVY+ E WK M +LT +CW+LV KK+ A
Sbjct: 449 LLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNEVGAA 508
Query: 413 IWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY--GAN-VSLWP 469
I++KPT+N CY N+ W V L+AC+ ++ E+ GA ++WP
Sbjct: 509 IYQKPTSNKCY-NKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKRGAVWPNMWP 567
Query: 470 ERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ESYVRALHWKKMKLRNVLDMRAG 528
ER+ T+P+ L S + E F A+ + W I+ ++Y+ + +RNV+DMRA
Sbjct: 568 ERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSNVRNVMDMRAV 627
Query: 529 FGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHA 588
+GGFAAAL + K WVMNVVPV +TLP+IY+RGL G+ HDWCE F+TYPRTYDLLHA
Sbjct: 628 YGGFAAALKDLKL--WVMNVVPVDAPDTLPIIYERGLFGIYHDWCESFNTYPRTYDLLHA 685
Query: 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAE 648
LFS KRCN+ ++M E+DR+LRP G IRD ++ + E++++ K+M W V + ++ +
Sbjct: 686 DHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEVEKMVKSMKWKVKMTQSKD 745
|
|
| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 242/506 (47%), Positives = 327/506 (64%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN EAI +L+S E ERHCP + CLVP P+GYK I WP SR+++WY
Sbjct: 381 DYIPCLDNEEAIMKLRSRRHFEHRERHCPEDPP--TCLVPLPEGYKEAIKWPESRDKIWY 438
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH++L E KG QNW+ + FPGGGTQFIHGA Y+D + + + +I WG RV
Sbjct: 439 HNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRV 498
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
++D GCGVASFG +L R+VI MS+APKD HE Q+QFALER PA+ A ++RLP+PS+
Sbjct: 499 ILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSR 558
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FDLIHC+RCR+ W + G+LLLE+NRMLR GGYF W+A PVY+ E + WKEM LT
Sbjct: 559 VFDLIHCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALT 618
Query: 398 TRLCWELV-----KKEGY-IAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKA 451
LCWELV K G AI++KP N CY R+ WYV L+A
Sbjct: 619 KSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNK-PPLCKNNDDANAAWYVPLQA 677
Query: 452 CITRLPENGY--GANVSL-WPERLRTSPDRLQSIQLDAF--IARKELFKAESKYWNEIIE 506
C+ ++P N G+ + WP RL+T P L S Q+ + A ++ F + ++W ++
Sbjct: 678 CMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRD-FTTDYEHWKHVVS 736
Query: 507 S-YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL 565
Y+ + +RNV+DMRA +GGFAAAL + WVMNVV ++ +TLP+IY+RGL
Sbjct: 737 KVYMNEIGISWSNVRNVMDMRAVYGGFAAAL--KDLQVWVMNVVNINSPDTLPIIYERGL 794
Query: 566 IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 625
G+ HDWCE F TYPR+YDLLHA LFS RCN+ +M E+DR++RPGG + +RD +
Sbjct: 795 FGIYHDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESN 854
Query: 626 VMDELQEIGKAMGW--HVTLRETAEG 649
V+ E++ + K++ W H+T + EG
Sbjct: 855 VIREVENMLKSLHWDVHLTFSKHQEG 880
|
|
| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 240/507 (47%), Positives = 329/507 (64%)
Query: 148 RYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPI 206
++++C G+ +YIPCLDN AIKQLKS E ERHCP CL+P P YK P+
Sbjct: 79 KWDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCPEPSP--KCLLPLPDNYKPPV 136
Query: 207 PWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMV 266
PWP+SR+ +WY+NVPH +LVE K QNW+ KE + FPGGGTQF G Y++ I K +
Sbjct: 137 PWPKSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKAL 196
Query: 267 PDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAA 326
P I WG +IRVV+D GCGVASFG LL ++VITMS APKD HE QIQFALERG PA ++
Sbjct: 197 PSIKWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERGIPATLSV 256
Query: 327 FATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQ 386
T++L +PS AFDLIHC+RCR++W D G LLE+NR+LR GG+F W+A PVY+ +
Sbjct: 257 IGTQQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSATPVYRDNDRD 316
Query: 387 EEHWKEMLDLTTRLCWELVKK----EGY-IAIWKKPTNNSCYLNREAGTIXXXXXXXXXX 441
W EM+ LT +CW++V K G + I++KPT+ SCY R T
Sbjct: 317 SRIWNEMVSLTKSICWKVVTKTVDSSGIGLVIYQKPTSESCYNKRS--TQDPPLCDKKEA 374
Query: 442 XXVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYW 501
WYV L C+++LP NV WPE P RL S++ + + E K +++ W
Sbjct: 375 NGSWYVPLAKCLSKLPSG----NVQSWPELW---PKRLVSVKPQSISVKAETLKKDTEKW 427
Query: 502 N-EIIESYVR--ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLP 558
+ + + Y++ A++W + RNV+DM AGFGGFAAALI WVMNVVPV +TL
Sbjct: 428 SASVSDVYLKHLAVNWSTV--RNVMDMNAGFGGFAAALIN--LPLWVMNVVPVDKPDTLS 483
Query: 559 VIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHV 618
V+YDRGLIGV HDWCE +TYPRTYDLLH++ L ++RC + ++ E+DR++RPGG++
Sbjct: 484 VVYDRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYL 543
Query: 619 YIRDSIDVMDELQEIGKAMGWHVTLRE 645
++D+++ + +L+ I ++ W + E
Sbjct: 544 VVQDNMETIMKLESILGSLHWSTKIYE 570
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 245/540 (45%), Positives = 333/540 (61%)
Query: 120 GEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGE 179
G + LVE++ ++ ++ +K+ P +YIPCLDN +AI++L ST E
Sbjct: 218 GAWSTQLVESQ--NEKKAQVSSIKWKVCNVTAGP----DYIPCLDNWQAIRKLHSTKHYE 271
Query: 180 RFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEK 239
ERHCP CLV P+GYK I WP+SR ++WY N+PH++L E KG QNW+
Sbjct: 272 HRERHCPEESP--RCLVSLPEGYKRSIKWPKSREKIWYTNIPHTKLAEVKGHQNWVKMSG 329
Query: 240 DKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVIT 299
+ FPGGGTQF +GA Y+D + + PDI WG+ RV++D GCGVASFG YL R+V+
Sbjct: 330 EYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVILDVGCGVASFGGYLFDRDVLA 389
Query: 300 MSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILL 359
+S APKD HE Q+QFALERG PAM T+RLP+P FDLIHC+RCR+ W + G LL
Sbjct: 390 LSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLL 449
Query: 360 LEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWEL--VKKEGY----IAI 413
LE+NR LR GG+F W+A PVY+ E WK M LT +CWEL +KK+ AI
Sbjct: 450 LELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAI 509
Query: 414 WKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY--GAN-VSLWPE 470
++KP +N CY N + W V L+ACI ++ E+ GA WPE
Sbjct: 510 YQKPMSNKCY-NERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPE 568
Query: 471 RLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ESYVRALHWKKMKLRNVLDMRAGF 529
R+ T P L S + +E F A+ + W I+ +SY+ + +RNV+DMRA +
Sbjct: 569 RVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVY 628
Query: 530 GGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAA 589
GGFAAAL + K WVMNVVP+ +TLP+IY+RGL G+ HDWCE F TYPRTYDLLHA
Sbjct: 629 GGFAAALKDLKL--WVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHAD 686
Query: 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEG 649
LFS KRCN+ +M E+DR+LRP G +RD ++ + E++++ K+M W+V + + +G
Sbjct: 687 HLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHSKDG 746
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 240/527 (45%), Positives = 328/527 (62%)
Query: 134 DRNGTEATKSFKITR-YEMCPGSMREYIPCLDNVEAIKQLK-STDKG--ERFERHCPLNG 189
D + A S + + + +C E IPCLD I Q++ D E +ERHCP
Sbjct: 68 DDSVANAEDSLVVAKSFPVCDDRHSEIIPCLDR-NFIYQMRLKLDLSLMEHYERHCPPPE 126
Query: 190 TGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGT 249
NCL+P P GYK PI WP+SR+EVW N+PH+ L ++K QNW+ ++ +K FPGGGT
Sbjct: 127 RRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGT 186
Query: 250 QFIHGADQYLDQIAKMVP---DITWGH-HIRVVMDAGCGVASFGAYLLPRNVITMSIAPK 305
F +GAD+Y+ IA M+ D+ +R V+D GCGVASFGAYLL +++TMS+AP
Sbjct: 187 HFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPN 246
Query: 306 DVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRM 365
DVH+NQIQFALERG PA + T+RLPYPS++F+ HCSRCRI+W + DG+LLLE++R+
Sbjct: 247 DVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRV 306
Query: 366 LRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLN 425
LR GGYFA+++ Y +E + WKEM L R+CW + K +W+KP +N CYL
Sbjct: 307 LRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLE 366
Query: 426 REAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY---GANVSLWPERLRTSPDRLQSI 482
RE GT V V ++ACIT ++ + G+ ++ WP RL +SP RL
Sbjct: 367 REPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADF 426
Query: 483 --QLDAFIARKELFKAE-SKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ 539
D F EL+K + YWN ++ S V K +RN++DM+A G FAAAL ++
Sbjct: 427 GYSTDMFEKDTELWKQQVDSYWN-LMSSKV-----KSNTVRNIMDMKAHMGSFAAALKDK 480
Query: 540 KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFS-VESKR 598
D WVMNVV G NTL +IYDRGLIG H+WCE F TYPRTYDLLHA +FS ++SK
Sbjct: 481 --DVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKG 538
Query: 599 CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 645
C+ +++EMDR+LRP G V IRD V++ +++ +A+ W E
Sbjct: 539 CSAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASE 585
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 252/571 (44%), Positives = 343/571 (60%)
Query: 108 NEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVE 167
++D T DD Y D+V G NG +SF + C E IPCLD
Sbjct: 51 DDDSTKKDDTSSSFYVEDVV-----G--NGF-TPRSFPV-----CDDRHSELIPCLDR-N 96
Query: 168 AIKQLK-STDKG--ERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSR 224
I Q++ D E +ERHCP NCL+P P GYK PI WP+SR+EVW N+PH+
Sbjct: 97 LIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIKWPKSRDEVWKVNIPHTH 156
Query: 225 LVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMV--PD--ITWGHHIRVVMD 280
L +K QNW+ + +K FPGGGT F +GAD+Y+ +A M+ P+ + G +R +D
Sbjct: 157 LAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANMLNFPNNVLNNGGRLRTFLD 216
Query: 281 AGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFD 340
GCGVASFG YLL ++TMS+AP DVH+NQIQFALERG PA + T+RLPYPS++F+
Sbjct: 217 VGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFE 276
Query: 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRL 400
L HCSRCRI+W + DGILLLE++R+LR GGYFA+++ Y +E W+EM L R+
Sbjct: 277 LAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRM 336
Query: 401 CWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENG 460
CW + K IW+KP N CYL RE GT V+ V+++ACIT+ ++
Sbjct: 337 CWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHD 396
Query: 461 Y---GANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKM 517
+ G+ ++ WP RL + P RL F ++F+ +++ W + +++Y L K
Sbjct: 397 HKTKGSGLAPWPARLTSPPPRLAD-----FGYSTDIFEKDTETWRQRVDTYWDLLSPKIQ 451
Query: 518 K--LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 575
+RN++DM+A G FAAAL E+ D WVMNVVP G NTL +IYDRGL+G +H WCE
Sbjct: 452 SDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEA 509
Query: 576 FDTYPRTYDLLHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIG 634
F TYPRTYDLLHA + S KR C+ ++LEMDR+LRP G + IRD V+D +++
Sbjct: 510 FSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYL 569
Query: 635 KAMGWHVTLRETA-EGPHASYR-ILTADKRL 663
KA+ W +TA E S IL K+L
Sbjct: 570 KALHWEAVETKTASESDQDSDNVILIVQKKL 600
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O22285 | PMTB_ARATH | 2, ., 1, ., 1, ., - | 0.6847 | 0.9849 | 0.9452 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 666 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-08 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 3e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.001 | |
| pfam05308 | 248 | pfam05308, Mito_fiss_reg, Mitochondrial fission re | 0.002 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 876 bits (2266), Expect = 0.0
Identities = 305/510 (59%), Positives = 367/510 (71%), Gaps = 10/510 (1%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN AIK L S ++ E ERHCP + L CLVP P GYKTPIPWP+SR++VWY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NVPH++L E+KGGQNW+ E DKF+FPGGGTQF HGAD Y+D +A+M+PDI WG +R
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
+D GCGVASFGAYLL R+V+TMS APKDVHE Q+QFALERG PAM+ TRRLPYPS+
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDL 396
+FD+ HCSRC I W +DGILLLEV+R+LR GGYF + PVY + EE +E WK M L
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEAL 240
Query: 397 TTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRL 456
LCW+LV K+G IAIW+KP NNSCY RE G PPLC D+PD WYV ++ACIT L
Sbjct: 241 AKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPL 300
Query: 457 PEN---GYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALH 513
PE G + WPERL P RL S Q E FKA+++ W + Y R L
Sbjct: 301 PEVSHEVGGGWLEKWPERLTAVPPRLASGQ--IGGVSAEAFKADTELWKRRVSKYKRLLK 358
Query: 514 --WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHD 571
K ++RNV+DM AGFGGFAAALI+ WVMNVVPV +TLPVIYDRGLIG+ HD
Sbjct: 359 LLIDKGRVRNVMDMNAGFGGFAAALIDDP--VWVMNVVPVDSPDTLPVIYDRGLIGIYHD 416
Query: 572 WCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQ 631
WCEPF TYPRTYDLLHA LFS+ KRCN+ I+LEMDR+LRPGG V IRD +DV+D+++
Sbjct: 417 WCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVK 476
Query: 632 EIGKAMGWHVTLRETAEGPHASYRILTADK 661
+I KAM W V + +T +GPH +IL A K
Sbjct: 477 KIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 280 DAGCGVASFGAYLLPRNVIT-MSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQA 338
D GCG L R + D+ + A +R V A LP+P ++
Sbjct: 2 DVGCGTGLLAEALARRGGARVTGV---DLSPEMLALARKRAPRKFVVGDAED-LPFPDES 57
Query: 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373
FD++ S ++ D L E+ R+L+ GG
Sbjct: 58 FDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 279 MDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER------GAPAMVAAFATRRL 332
+D GCG + LL D+ ++ A ER V +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTG-VDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
Query: 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYF 372
+FD++ S ++ D +L + R+L+ GG
Sbjct: 60 DLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAP------AMVAAFATRR 331
++D GCG L +++ D+ + ++ A ER +VA R
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGV--DISKEALELAKERLRDKGPKVRFVVADA--RD 56
Query: 332 LPYPSQAFDLIHCSRCRIN-WTRDDGILLL-EVNRMLRAGG 370
LP+ +FDL+ C+ ++ + LL E R+LR GG
Sbjct: 57 LPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 56 SLSPNLNKSFDISSLISQNQSLASPYIV-PSPAPVDPLPPPPPPPPP 101
S + S + S S I P+ PV +PPPPPPPPP
Sbjct: 146 EQSNSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPP 192
|
In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 666 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.95 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.88 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.7 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.62 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.56 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.54 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.5 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.48 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.47 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.45 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.44 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.43 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.42 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.41 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.39 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.39 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.38 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.37 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.37 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.35 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.35 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.34 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.33 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.32 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.32 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.32 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.31 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.29 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.27 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.27 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.27 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.25 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.24 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.23 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.23 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.2 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.2 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.2 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.18 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.17 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.16 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.13 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.13 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.12 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.12 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.09 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.09 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.09 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.08 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.07 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.06 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.04 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.04 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.04 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.04 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.02 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.01 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.01 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.01 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.0 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.0 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.0 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.0 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.99 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.98 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.98 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.97 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.97 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.96 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.96 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.96 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.96 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.96 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.96 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.96 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.96 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.96 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.95 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.94 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.93 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.92 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.92 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.91 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.91 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.9 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.89 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.88 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.87 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.87 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.86 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.86 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.86 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.85 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.84 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.84 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.84 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.83 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.82 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.82 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.82 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.81 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.79 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.79 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.79 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.78 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.77 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.77 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.76 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.76 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.72 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.71 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.7 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.7 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.68 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.68 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.68 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.68 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.67 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.67 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.67 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.66 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.66 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.66 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.65 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.64 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.62 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.61 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.61 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.6 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.6 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.59 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.59 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.58 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.58 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.58 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.56 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.56 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.56 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.55 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.55 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.55 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.54 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.51 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.5 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.5 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.49 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.49 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.48 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.48 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.48 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.48 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.46 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.45 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.45 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.45 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.45 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.45 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.44 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.43 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.43 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.42 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.41 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.41 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.39 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.39 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.39 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.38 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.38 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.36 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.35 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.35 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.34 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.34 | |
| PLN02366 | 308 | spermidine synthase | 98.32 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.31 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.31 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.31 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.3 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.3 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.29 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.29 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.28 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.27 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.26 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.25 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.25 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.23 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.22 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.21 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.2 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.19 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.19 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.19 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.18 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.18 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.18 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.18 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.18 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.18 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.16 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.16 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.16 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.16 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.15 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.15 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.15 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.15 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.14 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.13 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.12 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.12 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.1 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.09 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.08 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.07 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.05 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.04 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.04 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.04 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.04 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.03 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.03 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.03 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.02 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.02 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.02 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.01 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.01 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.0 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.99 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 97.99 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.98 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.97 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.97 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.96 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.94 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.94 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 97.93 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.92 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.92 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.92 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.91 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.9 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.9 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.9 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.89 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.88 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.86 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.85 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.84 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.83 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.81 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.81 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.79 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.79 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.79 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.78 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.76 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.76 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.75 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.74 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 97.73 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.72 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.72 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.7 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.7 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.69 | |
| PLN02476 | 278 | O-methyltransferase | 97.69 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.68 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 97.66 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.66 | |
| PLN02823 | 336 | spermine synthase | 97.62 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.6 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.6 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.57 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.56 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.56 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.56 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.54 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.53 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 97.53 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.52 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.51 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.51 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.5 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.47 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.44 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.43 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.42 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.41 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.4 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.38 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.37 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.35 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.35 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.35 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.33 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.32 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.31 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.31 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.3 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.3 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 97.3 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.29 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.26 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.25 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 97.23 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.22 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.22 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.21 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 97.2 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.19 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.16 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.16 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.13 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.1 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.08 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.08 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.07 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.05 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.05 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.02 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.01 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.0 | |
| PLN02366 | 308 | spermidine synthase | 97.0 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 96.99 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 96.98 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.95 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.94 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 96.9 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.89 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.88 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.88 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 96.86 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.86 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.84 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 96.83 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.8 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.77 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.76 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 96.71 | |
| PLN02476 | 278 | O-methyltransferase | 96.68 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.63 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.57 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.56 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.55 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 96.52 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.51 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 96.5 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 96.49 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.49 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.48 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 96.44 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.42 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.41 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.41 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.39 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.39 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 96.25 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 96.18 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 96.14 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.08 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.01 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.0 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.0 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 95.93 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 95.82 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.82 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.72 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.71 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.64 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 95.63 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.61 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 95.59 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 95.59 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.56 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.53 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 95.51 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 95.46 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 95.42 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 95.41 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 95.39 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 95.33 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 95.26 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.23 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.21 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 95.05 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.02 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 94.99 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 94.92 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.89 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.78 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 94.68 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.59 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 94.4 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.39 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.38 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 94.29 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 94.27 | |
| PLN02823 | 336 | spermine synthase | 94.26 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 93.89 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.67 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.63 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 93.63 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.6 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 93.54 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 93.35 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 93.32 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 93.28 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.26 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 93.16 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.0 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 92.97 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 92.92 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 92.74 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.64 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.52 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.44 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 92.24 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 92.04 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 91.89 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 91.87 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 91.64 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 91.51 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.49 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 91.38 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 91.23 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 91.09 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 90.92 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 90.68 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 90.67 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 90.17 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 89.97 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 89.33 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 89.29 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 89.06 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 88.89 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 88.73 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 87.36 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 87.18 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 87.08 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 87.07 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 86.88 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 86.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 86.47 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 86.28 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 86.18 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 86.11 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 85.76 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 85.55 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 85.41 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 85.26 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 85.25 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 85.01 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 84.99 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 84.91 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 84.69 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 84.56 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 84.4 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 84.19 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 83.88 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 83.8 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 83.37 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 83.22 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 82.64 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 81.89 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 81.79 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 81.72 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 81.16 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 81.11 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 80.84 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 80.32 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-138 Score=1125.80 Aligned_cols=500 Identities=59% Similarity=1.111 Sum_probs=480.3
Q ss_pred ceeccCCcHHHHHhcCCCcccchhccCCCCCCCCCccccCCCCCCCCCCcCCCCccccccCCCCCcccccccccCcchhc
Q 005981 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISK 237 (666)
Q Consensus 158 ~y~pc~d~~~~~~~~~~~~~~~~~er~C~~~~~~~~Clv~~P~~Y~~P~~wP~s~~~~W~~n~~~~~L~~~k~~q~W~~~ 237 (666)
|||||+|+.++++++++++++||+|||||+.+++++||||+|++|+.|++||+|||++|++|+||++|.++|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHH
Q 005981 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317 (666)
Q Consensus 238 ~g~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~ 317 (666)
+|++|.||||||+|.+|+.+|+++|.++++.+..++..+++||||||+|+|+++|.+++|+++.+++.+.+++|+|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999876667888999999999999999999999999999999999999999999
Q ss_pred cCCCceEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCC-CCHHHHHHHHHHHHHh
Q 005981 318 RGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDL 396 (666)
Q Consensus 318 rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~-~~~~el~~~w~~~~~l 396 (666)
||+++++.....++|||++++||+|||+.|++.|..+...+|.|+.|+|||||+|+++.+|.+ .+.+++.+.|..|+++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999999888778999999999999999999999998888999999999999999999999999 7778899999999999
Q ss_pred hhhhhhhhhhhcCceEEeecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCC---CCCCccccCcccCC
Q 005981 397 TTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPEN---GYGANVSLWPERLR 473 (666)
Q Consensus 397 ~~~l~W~~v~~~g~~~i~~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~---g~g~~l~~WP~Rl~ 473 (666)
++.+||+.+.+.++++|||||.+++|+..|+.+..+++|+..++++.+||.+|++||+.+++. ..+.++.+||+||+
T Consensus 241 ~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~ 320 (506)
T PF03141_consen 241 AKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLN 320 (506)
T ss_pred HHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhc
Confidence 999999999999999999999999999999988999999888999999999999999999975 45679999999999
Q ss_pred CCccchhhhchhhhhhhhhhhhhhhHhHHHHHHHHHHhcc--cCCCceeeEeeccccchHHHHHHhhCCCceEEEEeecc
Q 005981 474 TSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551 (666)
Q Consensus 474 ~~p~rL~~~~~~~~~~~~~~f~~d~~~w~~~v~~Y~~~l~--~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~ 551 (666)
++|+||.+..... .+.+.|.+|+++|+++|++|+++++ +++++||||||||||||||||||+++ +||||||||+
T Consensus 321 ~~P~rl~~~~~~g--~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~ 396 (506)
T PF03141_consen 321 AVPPRLSSGSIPG--ISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDD--PVWVMNVVPV 396 (506)
T ss_pred cCchhhhcCCcCC--CCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccC--CceEEEeccc
Confidence 9999999854322 2469999999999999999999887 88999999999999999999999999 5799999999
Q ss_pred CCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHH
Q 005981 552 SGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQ 631 (666)
Q Consensus 552 ~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~ 631 (666)
.++|||++||||||||+||||||+|+|||||||||||++|||.+.+||++++||+||||||||||++||||+.+++++|+
T Consensus 397 ~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~ 476 (506)
T PF03141_consen 397 SGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVK 476 (506)
T ss_pred CCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 632 EIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 632 ~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+|+++|||+++++++|+|+.++||||+|||
T Consensus 477 ~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 477 KIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-29 Score=269.57 Aligned_cols=193 Identities=20% Similarity=0.387 Sum_probs=151.1
Q ss_pred cchhhhcccCCCCCCC-ccccCcccCCC------CccchhhhchhhhhhhhhhhhhhhHhH---------HHHHHHHHHh
Q 005981 448 DLKACITRLPENGYGA-NVSLWPERLRT------SPDRLQSIQLDAFIARKELFKAESKYW---------NEIIESYVRA 511 (666)
Q Consensus 448 ~l~~~l~~L~~~g~g~-~l~~WP~Rl~~------~p~rL~~~~~~~~~~~~~~f~~d~~~w---------~~~v~~Y~~~ 511 (666)
....||-+.+ .|. .+.+||++++. |.++|...+..+ +|++.+++++ .+++++|...
T Consensus 33 ~~~~CLVp~P---~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~q-----nWv~~~gd~~~FPgggt~F~~Ga~~Yid~ 104 (506)
T PF03141_consen 33 ERLRCLVPPP---KGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQ-----NWVRVEGDKFRFPGGGTMFPHGADHYIDQ 104 (506)
T ss_pred CCCccccCCC---ccCCCCCCCCcccceeeecccCchHHhhhcccc-----cceeecCCEEEeCCCCccccCCHHHHHHH
Confidence 3456888777 454 68999999865 778888877665 7777666654 5788888744
Q ss_pred ----ccc--CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc---cccccccCCCCCCCC-
Q 005981 512 ----LHW--KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYP- 580 (666)
Q Consensus 512 ----l~~--~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl---ig~~~~~ce~~~~yp- 580 (666)
++. ..|.||.+||+|||+|+|||+|+++ +|.+|++.|.+. +++.|+|+|||+ ||++.+- .++ ||
T Consensus 105 i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~--rLP-fp~ 179 (506)
T PF03141_consen 105 IAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQ--RLP-FPS 179 (506)
T ss_pred HHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCcchhhhhhccc--ccc-CCc
Confidence 444 5689999999999999999999999 679999999985 799999999999 5554333 244 55
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe----------ChhHHHHHHHHHHhcCcEEEEEeccCCC
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD----------SIDVMDELQEIGKAMGWHVTLRETAEGP 650 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d----------~~~~~~~~~~i~~~l~W~~~~~~~~~~~ 650 (666)
++||||||++....+...- ..+|+|+|||||||||||++. ..+.+++|++++++|||+...++.+
T Consensus 180 ~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~--- 254 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD--- 254 (506)
T ss_pred cchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC---
Confidence 9999999994444333221 379999999999999999972 3567999999999999999876642
Q ss_pred CCceEEEEEEeCC
Q 005981 651 HASYRILTADKRL 663 (666)
Q Consensus 651 ~~~e~~l~~~k~~ 663 (666)
+-|-||+.
T Consensus 255 -----~aIwqKp~ 262 (506)
T PF03141_consen 255 -----TAIWQKPT 262 (506)
T ss_pred -----EEEEeccC
Confidence 77888863
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-22 Score=221.59 Aligned_cols=320 Identities=18% Similarity=0.236 Sum_probs=172.9
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc--CCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR--RLPYP 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e--~Lpf~ 335 (666)
..+.+.+.. ....+|||||||+|.++..|++. +|+|+|+++.++..+.. .........+...++. .++++
T Consensus 27 ~~il~~l~~----~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 27 PEILSLLPP----YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hHHHhhcCc----cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCC
Confidence 444555542 23468999999999999999876 89999999998865532 1111112234444443 56788
Q ss_pred CCCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhcCceEEe
Q 005981 336 SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~~~g~~~i~ 414 (666)
+++||+|+|+.+++|+.++ ...+++++.|+|||||++++........ .++.. ..+...+
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-~~~~~-------------------~~~~~~~ 160 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-GDSKR-------------------KNNPTHY 160 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-Ccccc-------------------cCCCCee
Confidence 8999999998887777332 4689999999999999999985422111 00000 0000000
Q ss_pred ecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCCccccCccc-CCC-Cccchhh-hchhhh----
Q 005981 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPER-LRT-SPDRLQS-IQLDAF---- 487 (666)
Q Consensus 415 ~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~~l~~WP~R-l~~-~p~rL~~-~~~~~~---- 487 (666)
.. ......++.++||..... ........+|..+-.... + ..+.++-.++.+ ++. --.++.. +..-+|
T Consensus 161 ~~-~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 234 (475)
T PLN02336 161 RE-PRFYTKVFKECHTRDEDG-NSFELSLVGCKCIGAYVK--N--KKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSG 234 (475)
T ss_pred cC-hHHHHHHHHHheeccCCC-CEEEEEEEEeechhhhhh--c--cCCcceEEEEEEeecCCcchhHHHHhhhhcccccc
Confidence 00 111222333444422111 001111222222211111 1 001111111111 000 0000000 000011
Q ss_pred hhhhhhhhhhhHhHHHHHH---HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHh
Q 005981 488 IARKELFKAESKYWNEIIE---SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD 562 (666)
Q Consensus 488 ~~~~~~f~~d~~~w~~~v~---~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~e 562 (666)
+...+.|....-.+...+. ...+.+.+.. -..|||+|||.|+.+..|++. ++ +|+.+| ++.++..+.+
T Consensus 235 i~~~~~f~g~~~~v~~~v~~te~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~-----~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 235 ILRYERVFGEGFVSTGGLETTKEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENFDV-----HVVGIDLSVNMISFALE 307 (475)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHH
Confidence 1111222221111222221 2223333333 356999999999999999886 54 566666 3577777765
Q ss_pred c--cc---cccccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 563 R--GL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 563 r--Gl---ig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+ |+ +.+.+.-+...+ +| .+||+|+|.+++.|..+. +.+|.|+.|+|||||.++|.|
T Consensus 308 ~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~h~~d~---~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 308 RAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTILHIQDK---PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCcccccCCH---HHHHHHHHHHcCCCeEEEEEE
Confidence 4 22 334333333222 44 789999999999888764 799999999999999999985
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=163.48 Aligned_cols=179 Identities=20% Similarity=0.309 Sum_probs=127.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
...+.+.+.++. ....+|||+|||+|.++..|... +|+++|+++.++..++. +.....+...|.+.+++
T Consensus 29 ~~a~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~-----~~~~~~~~~~d~~~~~~ 99 (251)
T PRK10258 29 QSADALLAMLPQ----RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ-----KDAADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHHhcCc----cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCCEEEcCcccCcC
Confidence 344555565552 34578999999999999888765 89999999988765543 22222345567888999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhcCceEEe
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~~~g~~~i~ 414 (666)
++++||+|+++.+ +||..++..+|.++.|+|||||.++++++ ...+..++.+.|..+........+..
T Consensus 100 ~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~el~~~~~~~~~~~~~~~~~~---------- 167 (251)
T PRK10258 100 ATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTL-VQGSLPELHQAWQAVDERPHANRFLP---------- 167 (251)
T ss_pred CCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeC-CCCchHHHHHHHHHhccCCccccCCC----------
Confidence 9899999997765 77878999999999999999999999975 66777888877755432211111100
Q ss_pred ecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCCc
Q 005981 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGAN 464 (666)
Q Consensus 415 ~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~~ 464 (666)
..+.-..++..++. ...+..+.+|+++.++|++|+.+|+++.
T Consensus 168 ---~~~l~~~l~~~~~~-----~~~~~~~~~f~~~~~~l~~lk~~G~~~~ 209 (251)
T PRK10258 168 ---PDAIEQALNGWRYQ-----HHIQPITLWFDDALSAMRSLKGIGATHL 209 (251)
T ss_pred ---HHHHHHHHHhCCce-----eeeeEEEEECCCHHHHHHHHHHhCCCCC
Confidence 01112234444542 2567788999999999999998877653
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=152.43 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=92.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~ 331 (666)
.+-+.+.+.+.. .++.+|||||||||.++..+++. +|+++|+|+.|+..++.+.. +.+.. ..+...++++
T Consensus 38 ~Wr~~~i~~~~~----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~-~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 38 LWRRALISLLGI----KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK-KKGVQNVEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHhhCC----CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh-ccCccceEEEEechhh
Confidence 344555555442 25689999999999999988875 89999999999988875433 33322 4556778999
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|||+|++||+|.++..+.+. +|.+.+|+|++|||||||.+++...
T Consensus 113 LPf~D~sFD~vt~~fglrnv-~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNV-TDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCCCccCEEEeeehhhcC-CCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 99999999999998885555 8999999999999999999988865
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=149.52 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.++.+|||+|||||.++..++++ +|+++|+|+.|+..++.+..........+...|++++|+++++||+|+|+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 34579999999999999888753 7999999999999887655443223445667789999999999999999988
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+. +|...+|+|++|+|||||.+++.++
T Consensus 126 lrn~-~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNF-PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhh-CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 6666 8899999999999999999998865
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-15 Score=126.15 Aligned_cols=92 Identities=25% Similarity=0.486 Sum_probs=71.9
Q ss_pred EEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccccCh
Q 005981 279 MDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD 355 (666)
Q Consensus 279 LDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~ 355 (666)
||+|||+|.++..|+++ +|+++|+++.++..++... ...+ ..+...+.+.+|+++++||+|++..+++|+ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~~~--~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KNEG--VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TTST--EEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cccC--chheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999988876 8999999998776554322 1112 225666789999999999999999887777 888
Q ss_pred HHHHHHHHHhccCCeEEEE
Q 005981 356 GILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 356 ~~~L~el~RvLkPGG~lv~ 374 (666)
..+++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=148.17 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=75.9
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-----CCChhHHHhccc--cccccccCCC-CCCCC-CccceEEec
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-----FNTLPVIYDRGL--IGVMHDWCEP-FDTYP-RTYDLLHAA 589 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-----~~~l~~~~erGl--ig~~~~~ce~-~~~yp-~tyDliha~ 589 (666)
-..+||+|||.|.|.+.++...=+ .|++.++- ...+..+.++|+ +-++.+-.+. ...+| ++.|-||..
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~---~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPD---ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCC---CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 466999999999999999988322 25666553 344566667777 2222221111 12245 889999865
Q ss_pred ccccc-------CCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhc-CcEE
Q 005981 590 GLFSV-------ESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAM-GWHV 641 (666)
Q Consensus 590 ~~f~~-------~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l-~W~~ 641 (666)
|.. .+.|=--+..|.++.|+|+|||.+.++ |..+..+.+.+.+..- +|+.
T Consensus 425 --FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 425 --FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred --CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 553 222322259999999999999999885 7777766655554443 3554
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-14 Score=141.07 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=138.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
+..++++.+-++. +....++|||||.|.+.++|... +++-+|.|..|+..++ -+...++.....+.|.+.|+|
T Consensus 58 ig~rlaDrvfD~k--k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf 133 (325)
T KOG2940|consen 58 IGDRLADRVFDCK--KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDF 133 (325)
T ss_pred HHHHHHHHHHHHh--hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccc
Confidence 3444555544432 34568999999999999999887 7899999999886553 333445555566678899999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH--HHHHHhhhhhhhhhhhhcCceE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW--KEMLDLTTRLCWELVKKEGYIA 412 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w--~~~~~l~~~l~W~~v~~~g~~~ 412 (666)
.+++||+|+++.. .||.+++...+.++...|||+|.|+-+.+ +..++.|++-.. .+++. .|.+.
T Consensus 134 ~ens~DLiisSls-lHW~NdLPg~m~~ck~~lKPDg~Fiasml-ggdTLyELR~slqLAelER------------~GGiS 199 (325)
T KOG2940|consen 134 KENSVDLIISSLS-LHWTNDLPGSMIQCKLALKPDGLFIASML-GGDTLYELRCSLQLAELER------------EGGIS 199 (325)
T ss_pred cccchhhhhhhhh-hhhhccCchHHHHHHHhcCCCccchhHHh-ccccHHHHHHHhhHHHHHh------------ccCCC
Confidence 9999999997654 99999999999999999999999988854 778888887643 22222 22222
Q ss_pred EeecCCc---hhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCC
Q 005981 413 IWKKPTN---NSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 463 (666)
Q Consensus 413 i~~kpl~---~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~ 463 (666)
..-.|+. +.-.++.+|||..+.. +.+...+.|+.+.+++.+|+.+|..+
T Consensus 200 phiSPf~qvrDiG~LL~rAGF~m~tv--DtDEi~v~Yp~mfeLm~dLq~MgEsn 251 (325)
T KOG2940|consen 200 PHISPFTQVRDIGNLLTRAGFSMLTV--DTDEIVVGYPRMFELMEDLQGMGESN 251 (325)
T ss_pred CCcChhhhhhhhhhHHhhcCccccee--cccceeecCchHHHHHHHHHhhcccc
Confidence 2222222 2344889999987655 77888999999999999999877655
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=140.09 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=83.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHH--HcCC-CceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFAL--ERGA-PAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~--~rg~-~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..+++. +|+|+|+|+.|+..++.+... .... ...+...+++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4579999999999988877642 799999999999887644321 1122 2345566788999999999999998
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++ +++..+++|+.|+|||||.+++.+.
T Consensus 153 ~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 153 YGLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 886666 7899999999999999999999875
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=139.84 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
.|.....+.+++.+.. .+..+|||||||+|..+..++.. +|+++|+++.++..++..... .....+...|+
T Consensus 35 ~gg~~~~~~~l~~l~l----~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~ 108 (263)
T PTZ00098 35 SGGIEATTKILSDIEL----NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDI 108 (263)
T ss_pred CCchHHHHHHHHhCCC----CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCc
Confidence 3433445666666642 34578999999999988888653 899999999988766543322 11233445567
Q ss_pred cCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...++++++||+|++..+++|+. .+...+|++++++|||||.|+++..
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77888889999999988878874 2678999999999999999999864
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-13 Score=143.27 Aligned_cols=120 Identities=17% Similarity=0.286 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcccc-cCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc
Q 005981 256 DQYLDQIAKMVPDI-TWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (666)
Q Consensus 256 ~~~i~~L~~~L~~i-~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~ 329 (666)
..+++.+++.+..- .....+.+|||||||+|.++..|++. +|+|+|+++.++..++. .+.+.+.. ..+...|.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCc
Confidence 34555666555310 01134578999999999999888764 89999999999887764 44444542 34556678
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+|+++++||+|+|..+++|+ .+...+++++.|+|||||.|++++.
T Consensus 178 ~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 178 LNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8899999999999999888887 7888999999999999999999864
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-13 Score=138.86 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=88.2
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
.+.+|||||||.|.++..|+.. +|+|+|+++.+++.|+ ..|.+.++...+....++++....++||+|+|..+++|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 4479999999999999999876 9999999999998887 466677766545555567776666899999999999999
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++.+++.+.+++||||.++++|.
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 8999999999999999999999985
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=131.71 Aligned_cols=178 Identities=17% Similarity=0.259 Sum_probs=116.8
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
....+.+.+.... .....+|||+|||+|.++..+++. +++++|+++.++..++.... ....+...+.+.++
T Consensus 19 ~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~ 93 (240)
T TIGR02072 19 MAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP 93 (240)
T ss_pred HHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC
Confidence 3444545444321 123468999999999998888764 68999999987755543221 12234555678888
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhcCceEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAI 413 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~~~g~~~i 413 (666)
+++++||+|+++.+ +|+..++..++.++.++|+|||.++++++ ......++...+.. ....+.
T Consensus 94 ~~~~~fD~vi~~~~-l~~~~~~~~~l~~~~~~L~~~G~l~~~~~-~~~~~~~~~~~~~~-----~~~~~~---------- 156 (240)
T TIGR02072 94 LEDSSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFSTF-GPGTLHELRQSFGQ-----HGLRYL---------- 156 (240)
T ss_pred CCCCceeEEEEhhh-hhhccCHHHHHHHHHHHcCCCcEEEEEeC-CccCHHHHHHHHHH-----hccCCC----------
Confidence 88899999998877 45558889999999999999999999864 44444444433321 000110
Q ss_pred eecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCC
Q 005981 414 WKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 463 (666)
Q Consensus 414 ~~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~ 463 (666)
+.......++++ |....+ ........|.+....++.++.+|.++
T Consensus 157 ---~~~~~~~~l~~~-f~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~ 200 (240)
T TIGR02072 157 ---SLDELKALLKNS-FELLTL--EEELITLSFDDPLDVLRHLKKTGANG 200 (240)
T ss_pred ---CHHHHHHHHHHh-cCCcEE--EEEEEEEeCCCHHHHHHHHHHhccCc
Confidence 111233455555 654333 44556778899999999999776544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=139.76 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=84.9
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHH-cCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-RGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~-rg~~~~~~~~d~e~Lpf 334 (666)
.+.+...+.. ..+++|||||||+|.++..++.. .|+|+|+|+.++.++....... ......+...+++.+|+
T Consensus 111 ~~~l~~~l~~----l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSP----LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 3445555543 23479999999999999888765 6999999998876543221111 12233455557888888
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|+|..+++|. .++..+|++++++|+|||.+++.+.
T Consensus 187 -~~~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred -cCCcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 7899999998887776 7889999999999999999999864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=130.55 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCchhHHHhcc------CCeEEEeCCcchHHHHHHHHHHHc-CCCceEEeecccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------~~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
+..+|||||||+|.++..+++ .+++|+|+++.|+..++.+..... .....+...++..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 456899999999998877754 279999999999988875443321 12234555677777765 589999888
Q ss_pred ccccccc-ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++.. +...+++++.|+|+|||.++++..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7666532 346899999999999999999964
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=134.14 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCchhHHHhcc------CCeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------~~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
...+|||||||+|.++..++. .+|+|+|+|+.|+..++.+... .+. ...+...++..++++ .+|+|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 457899999999998876654 2899999999999888765544 232 234455566777664 58999988
Q ss_pred ccccccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++.++ ...++++++++|||||.|++++.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 776666322 34899999999999999999864
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=132.84 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=80.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
...+++.+.. ....+|||||||+|.++..|+.+ +|+|+|+|+.|+..++ ++++ .+...|++.++
T Consensus 18 ~~~ll~~l~~----~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-----~~~~--~~~~~d~~~~~- 85 (255)
T PRK14103 18 FYDLLARVGA----ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-----ERGV--DARTGDVRDWK- 85 (255)
T ss_pred HHHHHHhCCC----CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----hcCC--cEEEcChhhCC-
Confidence 4455555542 34579999999999999888754 8999999998886553 3333 24445666664
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++||+|+|+.++ ||.+++..+++++.++|||||.+++..
T Consensus 86 ~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 PKPDTDVVVSNAAL-QWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCCCceEEEEehhh-hhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 56799999998775 555888999999999999999999984
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=133.04 Aligned_cols=108 Identities=24% Similarity=0.360 Sum_probs=80.2
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
....+++.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++. +.....+...|+..+.
T Consensus 19 ~~~~ll~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~-----~~~~~~~~~~d~~~~~ 89 (258)
T PRK01683 19 PARDLLARVPL----ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARS-----RLPDCQFVEADIASWQ 89 (258)
T ss_pred HHHHHHhhCCC----cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-----hCCCCeEEECchhccC
Confidence 34455555542 34579999999999999888753 79999999988865543 2222334445555554
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++||+|+|+.+ +||..+...+++++.++|||||.+++..
T Consensus 90 -~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4569999998877 5566888999999999999999999974
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=124.41 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=91.5
Q ss_pred CeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCC-CCCCCeeEEEecccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lp-f~d~sFDlVv~s~~l~h 350 (666)
..||+||||||..-.++... +|+++|.++.|-..+....+..+..... +.+++.+++| ++++|+|.|+|..++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 35899999999877777633 8999999999987776655555444333 5566789999 88999999999988766
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHH
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 394 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~ 394 (666)
. .++.+.|+++.|+|||||.+++..| +......+...|+.+.
T Consensus 158 v-e~~~k~L~e~~rlLRpgG~iifiEH-va~~y~~~n~i~q~v~ 199 (252)
T KOG4300|consen 158 V-EDPVKQLNEVRRLLRPGGRIIFIEH-VAGEYGFWNRILQQVA 199 (252)
T ss_pred c-CCHHHHHHHHHHhcCCCcEEEEEec-ccccchHHHHHHHHHh
Confidence 6 8999999999999999999999987 4555455555554443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=139.79 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+.+|||||||+|.++..|+.. +|+|+|+++.++..++.. +...+. ...+...+++.+++.+++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3468999999999999888765 899999999999877643 322222 23445556788888888999999999988
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+ .++..+++++.++|||||.+++++.
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 87 7899999999999999999999974
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-12 Score=126.35 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=85.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~L 332 (666)
.+.+++.+.. .+..+|||+|||+|.++..+++. +|+|+|+++.++..++...+ ..+.. ..+...+.+.+
T Consensus 34 ~~~~l~~l~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 34 RKDTMKRMNV----QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAMEL 108 (231)
T ss_pred HHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhcC
Confidence 3455555541 34579999999999998877642 89999999999877765443 33333 23455567778
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++++||+|++..++ ++.++...+++++.++|+|||.+++.+.
T Consensus 109 ~~~~~~fD~V~~~~~l-~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGL-RNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCccEEEEeccc-ccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8888999999988764 4448888999999999999999998864
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-12 Score=126.34 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCchhHHHhccC----------CeEEEeCCcchHHHHHHHHHHHcCCCc----eEEeecccCCCCCCCC
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAPA----MVAAFATRRLPYPSQA 338 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiS~~~l~~a~~~~a~~rg~~~----~~~~~d~e~Lpf~d~s 338 (666)
....++||++||||..+..+.+. +|+.+|+++.|++.+. +.+.++++.. .+...|++.|||++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 45589999999999887777543 7999999999998876 4555565432 4555589999999999
Q ss_pred eeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCC
Q 005981 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 339 FDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~ 379 (666)
||+.+.+..+-.| .++++.|+|++|||||||.|.+-.++-
T Consensus 178 ~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred ceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9999988886666 899999999999999999999887643
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-12 Score=122.96 Aligned_cols=95 Identities=31% Similarity=0.573 Sum_probs=75.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
....+|||||||+|.++..+.+. +++|+|+++.++.. . .......+....+.++++||+|+|+.+++|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 34579999999999999999877 99999999976644 1 112222223344457799999999988777
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
. +++..+|+++.++|||||+++++++.
T Consensus 91 ~-~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 91 L-PDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp S-SHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred c-ccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 7 68999999999999999999999863
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=114.04 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=75.4
Q ss_pred CCeEEEECCCCchhHHHhcc--C--CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecc-cCCCCCCCCeeEEEecc-c
Q 005981 275 IRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERG-APAMVAAFAT-RRLPYPSQAFDLIHCSR-C 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~-e~Lpf~d~sFDlVv~s~-~ 347 (666)
..+|||||||+|.++..+++ . +|+|+|+++.++..++.+...... ....+...|+ ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 46899999999999999887 3 999999999999888765533222 2334455555 22333 35699999988 4
Q ss_pred ccccc--cChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWT--RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~--~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+.++. ++...+++++.+.|+|||++++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34343 345689999999999999999986
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-12 Score=124.91 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
..+|||+|||+|.++..|+++ +|+|+|+|+.++..++.. +...++. ......+...++++ ++||+|+|+.+++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 368999999999999999877 899999999999887754 3444543 23344456666664 679999998886555
Q ss_pred cc-ChHHHHHHHHHhccCCeEEEEE
Q 005981 352 TR-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 352 ~~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
.. +...+++++.++|||||++++.
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32 3569999999999999996554
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=126.88 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
..+|||||||||.++..+++. +|+|+|+|+.|+..++. +. .....+++.+|+++++||+|+|+.+++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-----~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-----AD---DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-----cc---ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 468999999999999888765 89999999999876643 21 12345688999999999999998876555
Q ss_pred ccChHHHHHHHHHhccCCe
Q 005981 352 TRDDGILLLEVNRMLRAGG 370 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG 370 (666)
++++.+++|++|+|||.+
T Consensus 124 -~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCHHHHHHHHHHHhcCce
Confidence 899999999999999953
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-12 Score=130.45 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=80.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCC-CCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lp-f~d~sFDlVv~s~~l 348 (666)
...+|||+|||+|.++..|++. +|+++|+++.++..++. .+.+.++. ..+...+++.++ +.+++||+|+|..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4579999999999999999877 89999999999988764 34444542 234444555553 567899999998885
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+ .++..++.++.++|||||++++...
T Consensus 123 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 123 EWV-ADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred Hhh-CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 555 8889999999999999999988743
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-12 Score=118.73 Aligned_cols=101 Identities=21% Similarity=0.316 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp--f~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..|++ .+++|+|+++.++..++. .+++.+.. ..+...|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 347899999999999988883 289999999999988874 45555665 455666777777 65 899999988
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++++. .+...+++++.++|++||.++++..
T Consensus 81 ~~l~~~-~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GVLHHF-PDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp STGGGT-SHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cchhhc-cCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 776444 7888999999999999999999864
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-12 Score=124.04 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..+|||+|||+|.++.+|+++ +|+|+|+++.++..++. .+...++.......+....+++ ++||+|+|+.+++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 368999999999999999876 89999999999987764 4445555543444455555554 6899999988866663
Q ss_pred c-ChHHHHHHHHHhccCCeEEEEE
Q 005981 353 R-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 353 ~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
. +...++++++|+|||||++++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 3468999999999999996655
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-12 Score=115.70 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=56.9
Q ss_pred EEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC-CC-CCCCeeEEEecccccccc
Q 005981 279 MDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PY-PSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 279 LDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L-pf-~d~sFDlVv~s~~l~h~~ 352 (666)
||||||+|.++..+.+. +++++|+|+.++..++.+................... .. ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999988888754 8999999999996665555443322222222221221 11 22599999999987777
Q ss_pred cChHHHHHHHHHhccCCeEE
Q 005981 353 RDDGILLLEVNRMLRAGGYF 372 (666)
Q Consensus 353 ~d~~~~L~el~RvLkPGG~l 372 (666)
++...+++++.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=129.74 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=81.7
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHH-HcCCCceEEeecccCCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRLPYP 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~-~rg~~~~~~~~d~e~Lpf~ 335 (666)
+.+...+.. ..+++|||||||+|.++..++.. .|+|+|.|+.|+.++...... .......+...+++.++..
T Consensus 111 ~~~l~~l~~----~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLSP----LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 344554432 33579999999999988777654 699999999888654221111 1111223444567777754
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+||+|+|+.+++|+ .++..+|++++|+|||||.|++.+.
T Consensus 187 -~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 589999999998887 8899999999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=127.42 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-------CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-------~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
...+|||+|||+|.++..+++. .++|+|+|+.++..+. ++.....+...+...+|+++++||+|++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~-----~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA-----KRYPQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH-----HhCCCCeEEEeecccCCCcCCceeEEEEec
Confidence 3468999999999988887643 5899999998875543 333334455667888999999999999754
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~ 387 (666)
. ...+.++.|+|||||+|++.++ ...++.+++
T Consensus 160 ~--------~~~~~e~~rvLkpgG~li~~~p-~~~~l~el~ 191 (272)
T PRK11088 160 A--------PCKAEELARVVKPGGIVITVTP-GPRHLFELK 191 (272)
T ss_pred C--------CCCHHHHHhhccCCCEEEEEeC-CCcchHHHH
Confidence 3 2246899999999999999864 555555544
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=127.35 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..+++. +|+++|+++.|+..++.+.. ..+ ..+...+.+.+++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~--i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKE--CKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccC--CeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 3468999999999988777542 79999999999877764332 112 2345567788899889999999988877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++ .+...+|+++.|+|||||.+++...
T Consensus 190 ~~-~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YW-PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hC-CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 66 7888999999999999999988753
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-11 Score=134.60 Aligned_cols=102 Identities=18% Similarity=0.309 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||||||+|.++..|++. +|+|+|+|+.++..++.+. ........+...|...+++++++||+|+|..+++|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERA-IGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHh-hcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 4578999999999888877754 8999999999887765432 22222334555677778888889999999888777
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ .++..++++++|+|||||.+++++.
T Consensus 345 ~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 345 I-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred c-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 7 7889999999999999999999864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-11 Score=119.10 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e 330 (666)
..+.+.+.+.+.. ....+|||+|||+|.++..++.. +++++|+++.++..++.+ ....+....+...+..
T Consensus 5 ~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLAV----QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccc
Confidence 3455556665542 34579999999999988877642 799999999887666543 1111223344555677
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++++||+|++..++.|+ .++..+++++.++|||||.+++...
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 788888999999998887776 7889999999999999999998863
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-11 Score=124.68 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+.+|||||||+|..+..++.. +|+++|+++.++..++... ...+... .+...+++.+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~-~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANA-RKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHH-HHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 4579999999999766544432 6999999999988876433 3344432 3444578888888889999998766
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ |+..+...+++++.|+|||||.|++++.
T Consensus 156 ~-~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 156 I-NLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred c-cCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 5557888999999999999999999865
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.9e-12 Score=107.03 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=69.7
Q ss_pred eeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhccc---cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 523 LDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 523 lD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
||+|||.|.+++.|+++ +. +|+.+|. +.+++.+.++.. +.+.+.-.+.++.-+++||+|++.++|.+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~-----~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA-----SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC-----EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCC-----EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--
Confidence 79999999999999999 76 5555653 567888877655 225555556664434999999999999988
Q ss_pred CCCHHHHHHHhhhcccCCeEEEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
.+...++.|+.|+|||||+++|
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 3558999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-11 Score=109.80 Aligned_cols=92 Identities=29% Similarity=0.534 Sum_probs=70.1
Q ss_pred EEEECCCCchhHHHhcc-------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc-cc
Q 005981 278 VMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC-RI 349 (666)
Q Consensus 278 VLDIGCGtG~~a~~L~~-------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~-l~ 349 (666)
|||+|||+|..+..+.+ .+++++|+++.++..++.+.. +.+....+...|..++++.+++||+|+|+.. +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~-~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS-EDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH-HTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch-hcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999988877763 389999999999988775443 3556667777788888888899999999655 55
Q ss_pred cccc-ChHHHHHHHHHhccCCe
Q 005981 350 NWTR-DDGILLLEVNRMLRAGG 370 (666)
Q Consensus 350 h~~~-d~~~~L~el~RvLkPGG 370 (666)
|+.+ +...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 6532 23589999999999998
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-11 Score=122.51 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=97.3
Q ss_pred cCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC
Q 005981 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA 320 (666)
Q Consensus 244 Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~ 320 (666)
|+.+...+.......++.+++.+.- .++.+|||||||.|.++.+++++ +|+|+++|+++...++. .++++|+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L----~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~-r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGL----KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK-RIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCC----CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH-HHHHcCC
Confidence 4444445555555677777777752 46699999999999999999877 89999999998877764 4555676
Q ss_pred CceEEeecccCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEECCCCC
Q 005981 321 PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQPVYK 381 (666)
Q Consensus 321 ~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~P~~~ 381 (666)
...+... ..+.....+.||-|++..++.|+.. +...+++.++++|+|||.+++-+.....
T Consensus 121 ~~~v~v~-l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 121 EDNVEVR-LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred CcccEEE-eccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 6322221 2333333455999999999999853 3679999999999999999998754433
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-11 Score=124.21 Aligned_cols=126 Identities=20% Similarity=0.324 Sum_probs=87.0
Q ss_pred cCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC
Q 005981 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA 320 (666)
Q Consensus 244 Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~ 320 (666)
|+.+...+.......++.+.+.+. + +++.+|||||||.|.++.+++++ +|+|+++|+.....++ +.+.+.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~-l---~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLG-L---KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhC-C---CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCC
Confidence 344444555555667777777775 2 45689999999999999999987 8999999987766655 34555676
Q ss_pred Cc--eEEeecccCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 321 PA--MVAAFATRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 321 ~~--~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. .+...|..+++ .+||.|++..++.|.. .+...+++++.++|||||.+++.+.
T Consensus 111 ~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred CCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 53 33344555544 3899999999999985 3457999999999999999998753
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-11 Score=124.40 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=76.5
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
.+|||+|||+|.++.+|++. +|+|+|+|+.++..++ +.+...++...+...|....++ +++||+|+++.++++...
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 58999999999999999876 8999999999988776 4555566654444445555544 578999999887666532
Q ss_pred -ChHHHHHHHHHhccCCeEEEEE
Q 005981 354 -DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 354 -d~~~~L~el~RvLkPGG~lv~s 375 (666)
+...+++++.++|+|||++++.
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 3458999999999999997665
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=112.57 Aligned_cols=96 Identities=20% Similarity=0.145 Sum_probs=74.8
Q ss_pred CCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+.+|||+|||+|.++..++. .+|+++|.++.++..++. .+++.++. ..+...+.+.++. .++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 57899999999988877753 289999999999988874 44445554 3444556666666 679999997542
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...+++++.++|||||.+++...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 5668899999999999999999853
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=113.95 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=79.3
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..++||+|||.|..+.+|+++ .|+++|.|+..+...+ +.|.+.++.......|++...++ +.||+|++..++++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 468999999999999999988 9999999998887764 67778888876666777777765 6899999877766664
Q ss_pred cCh-HHHHHHHHHhccCCeEEEEEE
Q 005981 353 RDD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 353 ~d~-~~~L~el~RvLkPGG~lv~st 376 (666)
.+. ..++..+...++|||++++.+
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 443 478999999999999998864
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=114.61 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..|.+. +++|+|+|+.++..++... ....+...++.. ++++++||+|+|+.+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 3468999999999988877643 7999999999886664321 122334445555 78889999999999988
Q ss_pred ccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+.++ ...+++++.|++ ++++++...
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 88533 458999999998 567777753
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=116.50 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=76.3
Q ss_pred eEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEecccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+|||||||+|.++..+++. +|+|+|+++.++..++... ...+... .+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999988887653 7999999998887776443 3344432 3344455555654 58999999888777
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ .+...+++++.++|||||++++.+.
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 7 7788999999999999999999864
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-11 Score=121.45 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-Cc----e--EEeecccCCCCCCCCeeEEEec
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PA----M--VAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~----~--~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
+++|||+|||+|.++..|+.. +|+|+|+++.|+..|+.. +...-. .. . +...+.+.+ .+.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 478999999999999999876 999999999999887654 221111 10 1 112223333 2459999999
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++|. .|+..++..+.+.|||||.+++++.
T Consensus 166 evleHV-~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 166 EVLEHV-KDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHH-hCHHHHHHHHHHHhCCCCceEeeeh
Confidence 999999 8999999999999999999999974
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=113.73 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecc-cCCC--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-RRLP--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~-e~Lp--f~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..+++. +|+|+|+++.++..++.+.. ..+.. ..+...++ +.++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3478999999999988887653 79999999999988775443 33433 34455566 6666 777899999976
Q ss_pred cccccccc--------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~--------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. .+|.. ....+++++.++|||||.|++++.
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 34422 135789999999999999999863
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=131.39 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=79.0
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--CCCCCeeEEEecccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRCR 348 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--f~d~sFDlVv~s~~l 348 (666)
+.+|||||||+|.++..++.. +|+|+|+|+.|+..++.+. ...+....+...|...++ +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 479999999999988777643 8999999999998876543 233333344445666777 788999999988877
Q ss_pred cccc------------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWT------------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~------------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++|. .+...+|+++.|+|||||.+++...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 6653 2346899999999999999999863
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-10 Score=117.46 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...++...+........+..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~-~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNA-ELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 3479999999999888777654 7999999999998877544 344443322221111233446799999986442
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.....++.++.++|||||++++++.
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2235789999999999999999964
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=113.63 Aligned_cols=132 Identities=21% Similarity=0.262 Sum_probs=98.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..+++..++. ...++|.|+|||+|..+..|.++ .|+|+|-|+.|+++| +.+.....+...|+..+.
T Consensus 19 a~dLla~Vp~----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-----a~rlp~~~f~~aDl~~w~- 88 (257)
T COG4106 19 ARDLLARVPL----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-----AQRLPDATFEEADLRTWK- 88 (257)
T ss_pred HHHHHhhCCc----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-----HHhCCCCceecccHhhcC-
Confidence 3456666663 45678999999999999999877 899999999988654 456666667666776665
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhh
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVK 406 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~ 406 (666)
++..+|+++++ ..+||.+|-..+|..+...|.|||.+.+..+ .+... .....|.+.++...|...-
T Consensus 89 p~~~~dllfaN-AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP-dN~de----psH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 89 PEQPTDLLFAN-AVLQWLPDHPELLPRLVSQLAPGGVLAVQMP-DNLDE----PSHRLMRETADEAPFAQEL 154 (257)
T ss_pred CCCccchhhhh-hhhhhccccHHHHHHHHHhhCCCceEEEECC-CccCc----hhHHHHHHHHhcCchhhhh
Confidence 45789999955 5599999999999999999999999999853 33321 2233455666666675543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-10 Score=118.03 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=102.4
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc-----CCCceEEe
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-----GAPAMVAA 326 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r-----g~~~~~~~ 326 (666)
+....++.+.+.+.... +.++.+|||||||+|.++..|++. +|+|+|+|+.|+..++.+..... .....+..
T Consensus 125 ~~~~~v~~~l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred ChHHHHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 33445555665554210 123579999999999999999876 89999999999988875443220 11223333
Q ss_pred ecccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhh
Q 005981 327 FATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV 405 (666)
Q Consensus 327 ~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v 405 (666)
.|.+.+ +++||+|+|..+++|+..+. ..+++.+.+ +.+||. +++..|.... . ..+..+... |.
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~-~---~~l~~~g~~-----~~-- 267 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLY-Y---DILKRIGEL-----FP-- 267 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchH-H---HHHHHHHhh-----cC--
Confidence 444333 57899999999988884433 245666664 455555 4554332111 1 111111110 11
Q ss_pred hhcCceEEeecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhh
Q 005981 406 KKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACI 453 (666)
Q Consensus 406 ~~~g~~~i~~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l 453 (666)
........|..+..+...+++++||.+..+ .......||.-+.+|.
T Consensus 268 g~~~~~r~y~~s~eel~~lL~~AGf~v~~~--~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 268 GPSKATRAYLHAEADVERALKKAGWKVARR--EMTATQFYFSRLLEAV 313 (315)
T ss_pred CCCcCceeeeCCHHHHHHHHHHCCCEEEEE--EEeecceeHHhhhhhc
Confidence 000111123334445667889999976544 3344555666666654
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=98.95 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-CCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~-Lpf~d~sFDlVv~s~~ 347 (666)
...+|||+|||+|.++..++++ +|+++|+++.+++.++.... ..+... .+...+... ++...++||.|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 3468999999999999888764 79999999998887765443 333332 333333332 3333468999997654
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.. ....+++++.++|+|||.|++..
T Consensus 98 ~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22 23589999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=106.43 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=92.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e 330 (666)
.+++.+.+.+....-+....+|||+|||+|.+...|++. ..+|+|.|+..+.-|+ +.|+.++..+ .+.+.|+.
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeecc
Confidence 455555555542111233458999999999999999976 5999999999887765 6777777764 56666655
Q ss_pred CCCCCCCCeeEEEeccccc--ccccC-----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 331 RLPYPSQAFDLIHCSRCRI--NWTRD-----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~--h~~~d-----~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
.-.+..+.||+|+--..+- .+.++ +..++..+.++|+|||.|+|++ ++++..|+.+.+
T Consensus 129 ~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f 193 (227)
T KOG1271|consen 129 DPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEF 193 (227)
T ss_pred CCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHH
Confidence 5456678899998433221 12122 2367888999999999999986 788888776643
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=4e-10 Score=111.48 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+++||+|||.|.++..|+.+ +++++|+++..+..++.+.+.. ....+...++... .+.+.||+|+++.+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 45679999999999999999998 9999999998886665443321 1223444443332 46799999999998777
Q ss_pred ccc--ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~--d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+ +...++..+.+.|+|||.+++.+.
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 643 345789999999999999999863
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=114.81 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=84.7
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHc-CCCc--eEEeecccCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER-GAPA--MVAAFATRRL 332 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~r-g~~~--~~~~~d~e~L 332 (666)
-+++...++.+ .+++|||||||+|.++-+++.+ .|+|+|.+.....+. +++++- +... ......++.+
T Consensus 104 W~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF--~~i~~~lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 104 WDRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQF--EAIKHFLGQDPPVFELPLGVEDL 177 (315)
T ss_pred HHHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHH--HHHHHHhCCCccEEEcCcchhhc
Confidence 34556666542 4589999999999999888876 799999887654332 233222 2222 2332457888
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
|. .++||+|+|..++.|. .++-..|.+++..|++||.+++-|.-
T Consensus 178 p~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred cc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 87 7899999999999998 88999999999999999999998763
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-10 Score=111.77 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=74.9
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHH------------HcCCCceEEeecccCCCCC-CCCe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL------------ERGAPAMVAAFATRRLPYP-SQAF 339 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~------------~rg~~~~~~~~d~e~Lpf~-d~sF 339 (666)
..+|||+|||.|..+.+|+++ +|+|+|+|+..+..++.+... .++....+.+.|+..++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 469999999999999999988 999999999988754321100 0112233445566565532 3579
Q ss_pred eEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 340 DLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 340 DlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
|.|+...+++|+.++. ..+++.+.++|||||.+++.++
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999888888885444 3789999999999998666643
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.3e-10 Score=121.27 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
...++.+.+.+.. .++.+|||||||+|.++..+++. +|+|+|+|+.++..++.+. .+....+...+...+
T Consensus 153 ~~k~~~l~~~l~l----~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l 225 (383)
T PRK11705 153 EAKLDLICRKLQL----KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc
Confidence 3445555555541 34579999999999999888764 8999999998887665433 133333333344433
Q ss_pred CCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|++..+++|.. .+...+++++.++|||||++++.+.
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 47899999988877763 2346899999999999999999864
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=107.61 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
+.+.+.+.+.. .+..+|||+|||+|.++..++.. +++++|+++.++..++.+.. ......+...++.++
T Consensus 27 ~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 27 WRRRAVKLIGV----FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHHHHhcc----CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC
Confidence 34445554432 24579999999999988877653 79999999987766554332 111233445566777
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++++||+|+++..+++. .+...+++++.++|+|||.+++.+.
T Consensus 101 ~~~~~~~D~i~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNV-TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCCcEEEEEEeeeeCCc-ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7777899999988775555 7888999999999999999998764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=105.96 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=70.9
Q ss_pred CCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+.+|||+|||+|.++..++. .+|+++|.++.++..++. .+++.+.. ..+...++++++ .+++||+|+|..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 47899999999988877653 279999999998876654 34445553 344555666664 357999999754
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+ .+...+++.+.++|+|||.+++..
T Consensus 118 -~-~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -L-ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -h-hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 345678899999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=109.15 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=74.4
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC---CCCCCeeEEEecc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDLIHCSR 346 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp---f~d~sFDlVv~s~ 346 (666)
..+|||||||+|.++..++.+ +|+|+|+++.++..++.+. ...++.+ .+...++..++ ++++++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 368999999999999888765 8999999999988776544 3444433 34444554443 4567999999664
Q ss_pred cccccccCh--------HHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~--------~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+|.... ..+++++.|+|||||.|++.+.
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 3 5553321 4789999999999999999863
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=6e-10 Score=116.50 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCch----hHHHhcc---------CCeEEEeCCcchHHHHHHHHH---HHcCC-----------------
Q 005981 274 HIRVVMDAGCGVAS----FGAYLLP---------RNVITMSIAPKDVHENQIQFA---LERGA----------------- 320 (666)
Q Consensus 274 ~~~~VLDIGCGtG~----~a~~L~~---------~~V~gvDiS~~~l~~a~~~~a---~~rg~----------------- 320 (666)
...+|||+|||+|. ++..|.+ .+|+|+|+|+.++..|+...- ..+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 4444432 279999999999987764210 00111
Q ss_pred -------CceEEeecccCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEE
Q 005981 321 -------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 321 -------~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st 376 (666)
...+...++...+++.++||+|+|.++++++.. +...++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 123444566666667789999999999888742 23489999999999999999973
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=108.99 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--------CCCCCee
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAFD 340 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--------f~d~sFD 340 (666)
++.+|||||||+|.++..+++. .|+|+|+++ +. .. .+ ..+...|+...+ +.+++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~---~~--v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI---VG--VDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC---CC--cEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 4578999999999998888654 799999987 21 10 12 234445555532 5678999
Q ss_pred EEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~-----------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+|+.+ .++..+. ..+|.++.++|||||.|++..+
T Consensus 120 ~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 120 VVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9997654 4443322 3588999999999999999754
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-10 Score=119.10 Aligned_cols=114 Identities=19% Similarity=0.336 Sum_probs=73.6
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCcc
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~ty 583 (666)
++.+.+.++++.|. .|||+|||.|+++.+++++ |+.|..+.+.+.......+.+.++||-....--|..+..++.+|
T Consensus 51 ~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 44566677788885 5999999999999999999 88444444333222222234557787333322233344556799
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|-|.+-++|.|.+. -+.+.++.+++|+|||||.+++.
T Consensus 129 D~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999874 36789999999999999999985
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=106.59 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++. ..+...|... ..++++||+|+|+-- .
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 368999999999999988875 599999999988777644 4445555 3333333221 234689999998865 3
Q ss_pred ccccC-----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD-----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d-----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...+ ...++.+..+.|+|||.+++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33222 34789999999999999977643
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=118.24 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=73.8
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
.+|||+|||+|.++..++++ +|+++|+++.++..++.... ..++...+...|... ...+.||+|+|+..+|+.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 47999999999999888764 79999999999988875444 445554444333322 235789999998765543
Q ss_pred c----cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 T----RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~----~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .....+++++.++|||||.+++...
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 1235889999999999999999863
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=107.53 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHc-CCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
+..+|||+|||+|.++..++. .+++++|+++.++..++.+..... .....+...+...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 347899999999998877753 389999999988877765443211 11233444566677777789999998887
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++ .+...++.++.++|+|||.+++.+.
T Consensus 131 l~~~-~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNV-PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccC-CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 6655 7888999999999999999988764
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=114.20 Aligned_cols=99 Identities=23% Similarity=0.322 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCC-CCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-QAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d-~sFDlVv~s~~l~ 349 (666)
++++|||+|||+|.++...++. .|+|+|++|..+..++ +.++.+++...........+.... +.||+|+|+-..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA- 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA- 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEEEehhhH-
Confidence 5689999999999887766654 7999999999887776 466666766322111112222333 699999987431
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+-...+..++.+.|||||++++|+.
T Consensus 240 ---~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 240 ---EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ---HHHHHHHHHHHHHcCCCceEEEEee
Confidence 1235888899999999999999974
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=108.77 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=82.6
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~ 329 (666)
+.....+.+.+.+.. ......+|||+|||+|.++..++.. +|+|+|+++.++..++.+... .+. ...+...++
T Consensus 37 ~~~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECCh
Confidence 333445556655542 0134579999999999999999866 899999999999887755433 332 234444555
Q ss_pred cCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.++ ++||+|++..+++|+.. +...++.++.+++++++++.+.
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5554 78999999888778742 3568899999999988777654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.7e-10 Score=108.46 Aligned_cols=105 Identities=26% Similarity=0.381 Sum_probs=78.0
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC-CC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YP 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp-f~ 335 (666)
+.|++.++ ++.+|||+|||.|.+..+|.+. ...|+|+++..+ ..+.++|++......+ +.|. |+
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v-----~~cv~rGv~Viq~Dld-~gL~~f~ 72 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV-----AACVARGVSVIQGDLD-EGLADFP 72 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH-----HHHHHcCCCEEECCHH-HhHhhCC
Confidence 44556664 3489999999999999999875 788999887644 4566788874433332 4554 89
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCC
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYK 381 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~ 381 (666)
+++||.|+++.++.+. .++..+|.|+.|+ |...+++ +|.+.
T Consensus 73 d~sFD~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVs-FPNFg 113 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVS-FPNFG 113 (193)
T ss_pred CCCccEEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEE-ecChH
Confidence 9999999999986666 7899999999777 5566665 55443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=111.60 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=79.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc------cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl------ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.+|||++||+|-+|..+++.- . .-.|+.+| +++||.++.+|-. |...+...|.+|.-++|||++-++..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~-g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSV-G--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHhc-C--CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 359999999999999999882 1 34677788 5899999999855 445688889999434999999999655
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
-+.. +++.+|.||.|||||||.+++-|-
T Consensus 130 rnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 130 RNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 5544 668999999999999999998643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-10 Score=116.06 Aligned_cols=125 Identities=19% Similarity=0.219 Sum_probs=86.3
Q ss_pred hhhhhhhHhHHHHHHHHHHhccc---CC---------------CceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC
Q 005981 492 ELFKAESKYWNEIIESYVRALHW---KK---------------MKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS 552 (666)
Q Consensus 492 ~~f~~d~~~w~~~v~~Y~~~l~~---~~---------------~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~ 552 (666)
..|.+.++|-..++..|..++|. .. ..-..|||+|||+|+.+.+|++. ++ .|+.+|
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~-----~v~giD 82 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGA-----HVHGVD 82 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCC-----EEEEEE
Confidence 55666666666667777666651 11 12246999999999999999765 54 455565
Q ss_pred -CCCChhHHHhccc----cccccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 553 -GFNTLPVIYDRGL----IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 553 -~~~~l~~~~erGl----ig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+++++..+.+|.- +.+.+.-++.. .|| .+||+|++..++.|... .+...+|.|+.|+|||||+++|.|.
T Consensus 83 ~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD~V~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 83 ICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFDMIYSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeEEEEEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3577777776532 43333333322 255 89999999887777541 2457999999999999999999864
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-09 Score=106.63 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=77.6
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCCCCC-CCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP-SQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~Lpf~-d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..+++. .++++|+++.++..++.+... .+. ...+...+...++.. .++||+|+++.++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 568999999999998887654 899999999888777654433 333 233444455555543 378999999887666
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .++..++.++.++|++||.+++++.
T Consensus 125 ~-~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 V-PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred C-CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 5 7889999999999999999998864
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-09 Score=113.38 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
++.+|||+|||+|.++...+.. +|+|+|+++..+..++ +.+..+++...+....... ...+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~-~- 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIEVSLSED--LVEGKFDLVVANIL-A- 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES--H-
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEEEEEecc--cccccCCEEEECCC-H-
Confidence 4579999999999776554443 8999999998887776 4566677666443322222 33489999997643 1
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+-+..++..+.++|+|||++++|+.
T Consensus 236 --~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 236 --DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp --HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 2235778889999999999999975
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.9e-09 Score=101.82 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=73.5
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..+....+...|..... .++||+|+++...++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 67999999999999988876 69999999999887765544 33444334444443332 468999999877655522
Q ss_pred C--------------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 354 D--------------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d--------------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. ...++.++.|+|+|||.+++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 1 24679999999999999999864
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-10 Score=115.37 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc-CCC-CCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RLP-YPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e-~Lp-f~d~sFDlVv~s~~l 348 (666)
+..+++||+|||||..+..|... +++|+|+|.+|+ +.|.++++-..+.+.+.. -++ ..+..||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl-----~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENML-----AKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCchhHHHH-----HHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34789999999999999999887 899999998877 455667654433333322 122 346789999988885
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..+ .+++.++.-+...|+|||.|.||.
T Consensus 199 ~Yl-G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYL-GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hhh-cchhhHHHHHHHhcCCCceEEEEe
Confidence 444 889999999999999999999995
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=106.79 Aligned_cols=113 Identities=23% Similarity=0.327 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR 331 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~ 331 (666)
....+.+.+.+.... ..+..+|||||||+|.++..|++. .|+++|+++.++..++..... .+. ...+...+
T Consensus 46 ~~~~~~~~~~l~~~~-~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d--- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADG-DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD--- 120 (230)
T ss_pred HHHHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---
Confidence 344555555554310 124478999999999999988765 899999999999888755443 333 22233333
Q ss_pred CCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv 373 (666)
++..+++||+|++..+++|+.. +...+++++.+.+++++.+.
T Consensus 121 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 4445688999999988888742 23478888888776554443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-09 Score=108.17 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||+|||+|.++..++.. +|+|+|+++.++..++.+. ...++...+. ++..+.+||+|+|+...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~~-- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANILA-- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCcH--
Confidence 4579999999999888777654 5999999999998776543 3444422111 11122379999976431
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.....++.++.++|||||++++++.
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2235788999999999999999964
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=104.26 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+....+...|... .+++++||+|+++.....
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA-LLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 3468999999999998877653 8999999999887776433 3344443344444433 245679999998743221
Q ss_pred ccc--------------------ChHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTR--------------------DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~--------------------d~~~~L~el~RvLkPGG~lv~st 376 (666)
-.. ....++.++.++||+||.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111 02357888999999999999864
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=102.00 Aligned_cols=148 Identities=22% Similarity=0.313 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHhcc-cCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHH----hccc--cccc
Q 005981 500 YWNEIIESYVRALH-WKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIY----DRGL--IGVM 569 (666)
Q Consensus 500 ~w~~~v~~Y~~~l~-~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~----erGl--ig~~ 569 (666)
.|++++-.-..... +..+ ..|||+|||+|.++.+|+.. ++ .|+.+|. +.+++.+. +.|+ +.+.
T Consensus 28 ~~~~~~~d~l~l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~~-----~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAPYLPGG--ERVLDVGSGAGFPGIPLAIARPEL-----KVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCCC-----eEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 67766632221111 2222 45999999999999988753 33 6777774 56665444 3455 6667
Q ss_pred cccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEE--ecc
Q 005981 570 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR--ETA 647 (666)
Q Consensus 570 ~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~--~~~ 647 (666)
+...+.+.. ..+||+|.|.. ..++++++.++.|+|||||++++-+.......+.++++.+.|++... -+-
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred eccHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEec
Confidence 777666654 67999999874 23568999999999999999999998889999999999999996543 222
Q ss_pred CCCCCceEEEEEEeC
Q 005981 648 EGPHASYRILTADKR 662 (666)
Q Consensus 648 ~~~~~~e~~l~~~k~ 662 (666)
+|-.++..+.|.+|+
T Consensus 173 ~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 173 PGLDGERHLVIIRKK 187 (187)
T ss_pred CCCCCcEEEEEEecC
Confidence 333445566677764
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=110.97 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchhHHHhcc--------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
+..+|||||||+|.++..|++ .+|+|+|+++.|+..++.+.. ..++ .+...+.+.+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-~~~~--~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-RPGV--TFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-cCCC--eEEEEecccccccCCCccEEEEC
Confidence 457899999999998877753 279999999999877654321 2222 23333456677777899999999
Q ss_pred ccccccccCh--HHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~~d~--~~~L~el~RvLkPGG~lv~st 376 (666)
.+++|+ ++. ..+|+++.|+++ |.+++..
T Consensus 137 ~~lhh~-~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHL-DDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecC-ChHHHHHHHHHHHHhcC--eeEEEec
Confidence 987777 443 479999999998 5555554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-09 Score=106.95 Aligned_cols=102 Identities=14% Similarity=0.273 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC-CCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp-f~d~sFDlVv~s~~l~h 350 (666)
+..+|||||||+|.++..+.+. +++++|+++.++..++..... .+....+...+...++ ..++.||+|+++.++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALE-SGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHH-cCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 4578999999999998888765 899999999888766644332 3333333344444443 34578999999888676
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+...+|+++.++|+|||.++++..
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 127 V-PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 6 7888999999999999999999864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=100.14 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
...+|||+|||+|.++..++.+ +|+++|+++.++..++.+.. ..++.. .+...+.. .++ .++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence 4578999999999998877653 89999999998887764443 334332 23333332 233 3689999976542
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....++.++.++|+|||++++..
T Consensus 108 ----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 108 ----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 234678999999999999998874
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.1e-09 Score=104.28 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=74.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~ 329 (666)
.....+.+.+.. .+..+|||||||+|..+..+++ .+|+++|+++.++..++.+.. ..+.. ..+...|.
T Consensus 59 ~~~~~~~~~l~~----~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~-~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 59 HMVAMMCELIEP----RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-RLGYWGVVEVYHGDG 133 (205)
T ss_pred HHHHHHHHhcCC----CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEECCc
Confidence 345555565541 3457899999999998877654 279999999998877764443 44443 23444454
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.......++||+|++.....++ ..++.++|+|||.+++..
T Consensus 134 ~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 4433345789999987664443 257889999999998863
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.6e-09 Score=103.61 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=84.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+.++.++++. +.+....-|||||||+|..+..|.+. ..+|+|+|+.|++.|+.+.. + ........ -+.+||
T Consensus 35 em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~-e--gdlil~DM-G~Glpf 108 (270)
T KOG1541|consen 35 EMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL-E--GDLILCDM-GEGLPF 108 (270)
T ss_pred HHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh-h--cCeeeeec-CCCCCC
Confidence 34555556554 23345678999999999999988876 78999999999988864221 1 12233333 489999
Q ss_pred CCCCeeEEEeccccccccc-------ChH----HHHHHHHHhccCCeEEEEEECC
Q 005981 335 PSQAFDLIHCSRCRINWTR-------DDG----ILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~-------d~~----~~L~el~RvLkPGG~lv~st~P 378 (666)
..++||.|++..+ ++|.- ++. .++..++.+|++|+..++.-.|
T Consensus 109 rpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 109 RPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 9999999997655 68852 222 5677899999999999998543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-09 Score=115.55 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=69.7
Q ss_pred eeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHH----hccc---cccccccCCCCCCCCCccceEEec
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIY----DRGL---IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~----erGl---ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
-..|||+|||.|+++.+|+++ |+ +|+.+| ++.+++.+. ++|+ +.+.....+.++.-+.+||+|+|.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~-----~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA-----NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEEC
Confidence 356999999999999999987 66 445555 245555443 3465 344444444443223899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..+.|..++ ..+|.||.|+|||||.++|.+
T Consensus 194 ~~~~h~~d~---~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPDK---RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCCH---HHHHHHHHHHcCCCcEEEEEE
Confidence 888877653 689999999999999999964
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-09 Score=110.75 Aligned_cols=96 Identities=26% Similarity=0.286 Sum_probs=74.3
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhcc-------c--cccccccCCCCCCCC-CccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG-------L--IGVMHDWCEPFDTYP-RTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erG-------l--ig~~~~~ce~~~~yp-~tyDlih 587 (666)
..|||+|||+|.++..|+++ |.+ -+|+.+| ++.|++.+.+|. . +.+.+..+|.++ +| ++||+|.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~---~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~ 150 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSD---GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAIT 150 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEE
Confidence 36999999999999999875 311 1577777 478999887652 1 445556666665 45 8999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+..++.+..+ ...+|.||.|+|||||+++|.|
T Consensus 151 ~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 151 MGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EecccccCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 9988777654 5799999999999999999975
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-09 Score=108.37 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=73.8
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
....|||+|||+|.++..|.+.|. .|+.+| ++.+++.+.+++. +.+.....|.++..+++||+|.++..+...
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-----~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-----QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc
Confidence 345799999999999999998876 556666 3688888888754 344444455555334899999998665543
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
. +...+|.|+.|+|||||.++++.
T Consensus 117 ~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 G---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 3 45799999999999999999983
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=115.24 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=70.0
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC----ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~----~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+|||+|||+|.++..++++ +|+++|.++.++..++.+... .+.. ..+...+... .++.++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 58999999999999888764 899999999988887755433 3221 1222223211 134468999999866
Q ss_pred ccccc--c--ChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWT--R--DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~--~--d~~~~L~el~RvLkPGG~lv~st 376 (666)
++.-. . ....+++++.++|+|||.|++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44321 1 12478999999999999999985
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-09 Score=112.76 Aligned_cols=101 Identities=18% Similarity=0.288 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC--CCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL--PYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L--pf~d~sFDlVv~s~ 346 (666)
....+||||||+|.++..++.+ +++|+|+++.++..+..+ +...++.+ .+...|+..+ .++++++|.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3468999999999999988865 899999999999888654 44556554 3444455443 47789999999754
Q ss_pred cccccccCh------HHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDD------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~------~~~L~el~RvLkPGG~lv~st 376 (666)
. ..|.... ..++.++.|+|+|||.+.+.|
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 5563322 478999999999999999987
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-09 Score=111.35 Aligned_cols=113 Identities=23% Similarity=0.297 Sum_probs=73.1
Q ss_pred HhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhc----cc--ccccc
Q 005981 499 KYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMH 570 (666)
Q Consensus 499 ~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~ 570 (666)
+.|++.+... +....+. .|||++||+|-++..|+++ +- --.|+.+| +++||..+.+| |. |-..+
T Consensus 33 ~~wr~~~~~~---~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~ 104 (233)
T PF01209_consen 33 RRWRRKLIKL---LGLRPGD--RVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ 104 (233)
T ss_dssp ----SHHHHH---HT--S----EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHhc---cCCCCCC--EEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence 4676655433 3333443 6999999999999999876 21 12577777 57999999876 33 66677
Q ss_pred ccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 571 DWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 571 ~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..+|.++.-.++||.|-|+..+... ++....|.||.|||||||.++|-|
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~---~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNF---PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhh---CCHHHHHHHHHHHcCCCeEEEEee
Confidence 7788877434999999998766554 456899999999999999999964
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-09 Score=105.07 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=72.7
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC----------------CceEEeecccCCCCC-
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP- 335 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~----------------~~~~~~~d~e~Lpf~- 335 (666)
..+|||+|||.|..+..|+++ +|+|+|+|+..+..++ .++++ ...+...|+..++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 468999999999999999988 9999999998876543 22322 123344555555432
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEE
Q 005981 336 SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st 376 (666)
...||+|+-..+++|+.++. ..++..+.++|+|||.+++.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 35899999888778775443 489999999999999755543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-09 Score=105.77 Aligned_cols=115 Identities=20% Similarity=0.326 Sum_probs=76.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHH----Hhccc--cccc-cccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI----YDRGL--IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~----~erGl--ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|+++|. +|+.+|. +.+++.+ .++|+ +... .+. +.+ .++.+||+|.|..+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~-----~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~ 104 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF-----DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL-NNL-TFDGEYDFILSTVV 104 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh-hhC-CcCCCcCEEEEecc
Confidence 3699999999999999999987 4555553 4455443 34455 2222 333 222 23578999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe---Chh-----------HHHHHHHHHHhcCcEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---SID-----------VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d---~~~-----------~~~~~~~i~~~l~W~~~~~ 644 (666)
|.+.. ......++.+|.|+|||||++++-. ..+ ..+++.+.++ .|++...
T Consensus 105 ~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 105 LMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred hhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 76544 3356799999999999999965521 110 1345666665 6877554
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-09 Score=108.65 Aligned_cols=100 Identities=12% Similarity=0.207 Sum_probs=75.8
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCCCccceE
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDli 586 (666)
..++...+ ..|||+|||.|.++.+|+++ +. .|+.+| ++.+++.+.++++ .+.+...+.+. ...+||+|
T Consensus 23 ~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~-----~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 23 ARVGAERA--RRVVDLGCGPGNLTRYLARRWPGA-----VIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEE
Confidence 33444333 56999999999999999987 43 566676 4689999988875 33333334432 23799999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|+.+|.+..+ ...+|.++.|+|||||+++|.
T Consensus 94 ~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 94 VSNAALQWVPE---HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEehhhhhCCC---HHHHHHHHHHhCCCCcEEEEE
Confidence 99998887654 478999999999999999996
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=107.34 Aligned_cols=102 Identities=7% Similarity=0.118 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCchhHHHh-c-----cCCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYL-L-----PRNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L-~-----~~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
.+++|||||||.|.++..+ + ...++|+|+++.+++.|+.......++. ..+...|+.+++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 5689999999987443332 2 1279999999999988875554434543 244445544443234789999987
Q ss_pred ccccccc-cChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++|. .+...++..+.+.|+|||++++.+
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 878885 667899999999999999999985
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-09 Score=110.75 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=71.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCC-CCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTY-PRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~y-p~tyDliha~~ 590 (666)
..|||+|||.|.++..|+++|. +|+.+|. +.++..+.++ |+ +.+.+...+.+..+ +++||+|.|..
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4799999999999999999987 5666663 5777776654 44 33344333333333 48999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
++.+..+. ..+|.++.|+|||||++++.
T Consensus 121 vl~~~~~~---~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVADP---KSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhCCH---HHHHHHHHHHcCCCeEEEEE
Confidence 98877543 68999999999999999885
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=101.98 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e 330 (666)
.....+.+.+.. .++.+|||||||+|.++..++.. +|+++|+++.++..++.+.. ..+.. ..+...|..
T Consensus 63 ~~~~~~~~~l~~----~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELLDL----KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcc
Confidence 445556665542 34579999999999988776542 89999999998887765443 34443 344444554
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
....+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 444456889999986553322 346778999999998863
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.4e-08 Score=100.44 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=79.5
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d 328 (666)
....+++.+.+.+. ....+|||+|||+|.++..++.. +++|+|+++.++..++.. +...+.. ..+...+
T Consensus 72 ~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~d 145 (251)
T TIGR03534 72 DTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN-AARLGLDNVTFLQSD 145 (251)
T ss_pred ChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECc
Confidence 34456666666654 23458999999999998888764 899999999998877643 3444554 3344444
Q ss_pred ccCCCCCCCCeeEEEecccccc------cccC-------------------hHHHHHHHHHhccCCeEEEEEE
Q 005981 329 TRRLPYPSQAFDLIHCSRCRIN------WTRD-------------------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h------~~~d-------------------~~~~L~el~RvLkPGG~lv~st 376 (666)
... ++++++||+|+|+...+. +..+ ...++.++.++|+|||.+++..
T Consensus 146 ~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 146 WFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 433 455789999998643221 1000 1256889999999999999874
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=105.85 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHc-CCCceEEeecccC-CCCCCC----CeeEEE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR-LPYPSQ----AFDLIH 343 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d~e~-Lpf~d~----sFDlVv 343 (666)
..+|||+|||+|..+..|+++ +|+++|+|+.|+..++.+..... ++.......|+.+ +++... ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 468999999999988777643 79999999999988876654432 2333334445443 343322 233444
Q ss_pred eccccccccc-ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 344 CSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 344 ~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
+...+.++.. +...+|++++++|+|||.|++... .......+..+|
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d-~~~~~~~~~~aY 190 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD-LVKDPAVLEAAY 190 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc-CCCCHHHHHHhh
Confidence 4444444422 234789999999999999999854 333444444444
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=101.21 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=73.7
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~ 331 (666)
....+.+.+.. .+..+|||||||+|.++..|++. +|+++|+++.++..++.+ ..+.+... .+...|...
T Consensus 65 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~-~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLEL----KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR-LRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhCC----CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCeEEEECCccc
Confidence 34555555542 34579999999999999888764 399999999988877644 34445433 334444444
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....+.||+|++.....+ +...+.+.|+|||.+++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 3333468999997654322 3456889999999998874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-09 Score=114.74 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=75.4
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c---cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||+|||.|.++..|+..|+ +|+.+|. +.+++++.++. + |.+.+.-.|.++..+++||+|-|.+++
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 699999999999999999887 6677774 57888887652 2 344455555555444899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.|..+. +.+|.|+.|+|||||.++|.+
T Consensus 209 eHv~d~---~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVANP---AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcCCH---HHHHHHHHHHcCCCcEEEEEE
Confidence 987754 799999999999999999974
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-09 Score=107.73 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=67.2
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC------ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP------AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~------~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
+.++|+|||+|.-++.+++. +|+|+|+++.||. .+.+.-.. ......+...|--.++|.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~-----~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLK-----VAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHH-----HhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 48999999999777777776 9999999998775 44333211 11111122333334899999999988
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.|| -|.+.+++++.|+||+.|-++..
T Consensus 110 -~HW-Fdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 -VHW-FDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -HHh-hchHHHHHHHHHHcCCCCCEEEE
Confidence 888 68899999999999998844443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=100.44 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=64.1
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-C-CCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-L-PYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-L-pf~d~sFDlVv~s~~l~ 349 (666)
..+|||||||+|.++..+++. .++|+|+++.++..+ .++++. +...+++. + ++++++||+|+|+.+++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a-----~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLAC-----VARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHH-----HHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 368999999999999888654 789999998876544 334433 33334433 4 36778999999998866
Q ss_pred ccccChHHHHHHHHHhccC
Q 005981 350 NWTRDDGILLLEVNRMLRA 368 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkP 368 (666)
|. .++..+|+++.|++++
T Consensus 87 ~~-~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 AT-RNPEEILDEMLRVGRH 104 (194)
T ss_pred cC-cCHHHHHHHHHHhCCe
Confidence 65 8888999999887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-09 Score=101.07 Aligned_cols=93 Identities=26% Similarity=0.395 Sum_probs=68.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~ 598 (666)
.+|||+|||.|.++..|++.|+ +|+.+|. +.+++. +......++-.+. ...+++||+|+|.++|.|..+
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~-----~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~d- 93 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGF-----EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLPD- 93 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTS-----EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSSH-
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhccc-
Confidence 4699999999999999999987 5666663 344444 2222222211111 112389999999999999885
Q ss_pred CCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 599 CNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 599 c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
...+|.+|.|+|||||+++|.+..
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 589999999999999999998654
|
... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=106.33 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=78.7
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPY 334 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf 334 (666)
+.|++.++.. ...+|||+|||.|.++..|++. +++-+|++...+..++.+.+ .+++.. .+...+ ...+.
T Consensus 148 ~lLl~~l~~~----~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~-~N~~~~~~v~~s~-~~~~v 221 (300)
T COG2813 148 RLLLETLPPD----LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA-ANGVENTEVWASN-LYEPV 221 (300)
T ss_pred HHHHHhCCcc----CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-HcCCCccEEEEec-ccccc
Confidence 3455555531 2238999999999999999875 89999999988877775444 455554 333332 22333
Q ss_pred CCCCeeEEEecccccccccChH----HHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDG----ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~----~~L~el~RvLkPGG~lv~st~ 377 (666)
.+ +||+|+|+--+|.-..-.. +++.+..+.|++||.|.+...
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 44 9999999877554433233 889999999999999999864
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=85.08 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=70.2
Q ss_pred eEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC-CCCCeeEEEecccccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY-PSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf-~d~sFDlVv~s~~l~h~~ 352 (666)
+|||+|||+|.++..+... +++++|+++..+..++............+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999998888862 899999999876655421111111122333334444332 457899999988766534
Q ss_pred cChHHHHHHHHHhccCCeEEEEE
Q 005981 353 RDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 353 ~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.....+++.+.+.|++||.++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 66779999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=107.97 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=79.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH----HHhccc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV----IYDRGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~----~~erGl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|||+|||.|.++.+|+++|+ .|+.+|. +.+++. +.++|+ +.+. .|. +... .+..||+|.+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~-~~~~-~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDI-NSAS-IQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEech-hccc-ccCCccEEEEcchhh
Confidence 699999999999999999987 4555553 344444 344566 2222 121 1111 268999999998887
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEE---eCh-----------hHHHHHHHHHHhcCcEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIR---DSI-----------DVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~---d~~-----------~~~~~~~~i~~~l~W~~~~~~ 645 (666)
+.. +-++..++.+|.|+|||||++++- +.. -.-++|+++++. |++....
T Consensus 196 ~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 196 FLN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 654 345789999999999999996652 111 125677887776 8887653
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-08 Score=96.29 Aligned_cols=110 Identities=17% Similarity=0.064 Sum_probs=72.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR- 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~- 331 (666)
....+.+.+.. ....+|||+|||+|.++..++. .+|+++|+++.++..++.+.. +.+... .+...++..
T Consensus 28 v~~~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 28 VRLLLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHH
Confidence 33344555531 3457899999999999887753 289999999999888765443 344432 333333322
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++.....+|.|+.. ...+...++.++.++|+|||.+++...
T Consensus 103 ~~~~~~~~d~v~~~-----~~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQLAPAPDRVCIE-----GGRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhCCCCCCEEEEE-----CCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 22222346776532 123457899999999999999999863
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=105.11 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEecc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
.+..+|||||||+|.++..++++ +++++|. +.++..++ +.+.+.++.. .+...|..+.+++ .+|+|++++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEh
Confidence 34579999999999999888765 7999997 56776655 3444555543 3344455544554 369999888
Q ss_pred cccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
++|+|.++. ..+|++++++|||||.+++.+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888884433 4799999999999999999865
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-08 Score=105.27 Aligned_cols=103 Identities=22% Similarity=0.197 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
++.+|||+|||+|.++...+.. .++|+|+++.|+..++.+. +..+... .+...|+.++++.+++||+|+++.....
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl-~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINL-EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHH-HHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 4578999999999887665433 8999999999998776544 3445443 4555678888888889999998532111
Q ss_pred -------cccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 -------WTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 -------~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...+ ...++.++.|+|||||.+++..+
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 0011 35889999999999999998864
|
This family is found exclusively in the Archaea. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-09 Score=103.54 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=77.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHH----hccc-cccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIY----DRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~----erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
..|||+|||+|.++.+|+++|. .|+.+|. +.+++.+. +.|+ +.....-++.. .++.+||+|.+..+|.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA-ALNEDYDFIFSTVVFM 105 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc-cccCCCCEEEEecccc
Confidence 3699999999999999999987 4555653 45565443 3454 22221111222 2357899999998887
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----------hh---HHHHHHHHHHhcCcEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------ID---VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----------~~---~~~~~~~i~~~l~W~~~~~~ 645 (666)
+... -.++.++.++.|+|||||+++|-+. .. ..++|.+++.. |++...+
T Consensus 106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 6543 3567999999999999999555310 11 24566666654 7766554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=92.93 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+..+|||+|||+|.++..++.+ +|+++|+++.++..++.+.. ..+.. ..+...|... ++.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 3468999999999999888766 99999999998877764433 33332 2333333322 3445689999986543
Q ss_pred cccc--------------------cChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWT--------------------RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~--------------------~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+.. .....+++++.++|||||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3210 012467999999999999998874
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=92.61 Aligned_cols=100 Identities=27% Similarity=0.389 Sum_probs=70.6
Q ss_pred CeEEEECCCCchhHHHhcc---CCeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCC--CCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP--YPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lp--f~d~sFDlVv~s~~l 348 (666)
.+|||+|||+|.++..+++ .+++++|+++..+..++..... .+. ...+...|...+. +.+++||+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5899999999988877764 4899999999877666644433 333 2345555655544 678999999987665
Q ss_pred cccccC-------hHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRD-------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d-------~~~~L~el~RvLkPGG~lv~st 376 (666)
...... ...+++++.++|||||.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 533211 2478999999999999999875
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=101.90 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=81.6
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHh----ccc---cccccccCCCCCCCCCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~e----rGl---ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
.|||+|||.|+++..+++. ++ +|+.+| ++.++..+.+ +|+ +.+...-.+.. .++.+||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-----~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-----QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHH
Confidence 5999999999999999886 23 444454 3566665554 355 44444333222 3468999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------HHHHHHHHHHhcCcEEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------~~~~~~~i~~~l~W~~~~ 643 (666)
+|.+..+ ...++.++.|+|||||++++.|... ...++.+++++-.+++..
T Consensus 76 ~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 76 VIHHIKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHHhCCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 8888754 4799999999999999999986421 145677778888877653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.1e-08 Score=97.66 Aligned_cols=103 Identities=20% Similarity=0.309 Sum_probs=71.5
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC-Cc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RT 582 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp-~t 582 (666)
+.+..+ .+|||+|||.|.++..|++. +.. .+|+.+|. +.+++.+.++ ++ +.+.+.-.+.++ +| .+
T Consensus 41 l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 114 (231)
T TIGR02752 41 MNVQAG--TSALDVCCGTADWSIALAEAVGPE---GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNS 114 (231)
T ss_pred cCCCCC--CEEEEeCCCcCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCC
Confidence 344444 35999999999999999875 211 14555663 4666665543 33 444555555443 44 89
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
||+|++...+.+..+ ...+|.|+.|+|||||++++.|.
T Consensus 115 fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 115 FDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 999999877665543 46899999999999999998753
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.4e-08 Score=96.32 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=71.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPY 334 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf 334 (666)
....+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.++.+ .+... .+...+......
T Consensus 66 ~~~~l~~~l~~----~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLEL----KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCC
Confidence 34455555442 34579999999999988776654 899999999888777654443 34432 333334322111
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..+.||+|++.....+ +..++.+.|+|||.+++..
T Consensus 141 ~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 141 AYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEE
Confidence 3478999998654332 2456789999999999874
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=93.29 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=67.3
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC-
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP- 333 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp- 333 (666)
.++.+....+ .++.+|||+|||+|.++..++.+ +|+++|+++.+ ...++ .+...+..+..
T Consensus 21 ~~~~~~~~~i---~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i--~~~~~d~~~~~~ 86 (188)
T TIGR00438 21 LQLNQKFKLI---KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENV--DFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHhccc---CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCc--eEEEeeCCChhH
Confidence 3444444433 34579999999999988777543 59999999853 11122 23333443322
Q ss_pred -------CCCCCeeEEEecccc---cccccC-------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 -------YPSQAFDLIHCSRCR---INWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 -------f~d~sFDlVv~s~~l---~h~~~d-------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|++..+. -+|..+ ...++.++.++|+|||.+++..+
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 456789999975431 112111 25789999999999999999753
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.5e-08 Score=95.47 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCC-C-ceEEeecccC-CCCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~-~-~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
....+|||+|||+|.++..++. .+|+++|+++.++..++.+. +..++ . ..+...+... ++...+.||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~-~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA-EKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 3457999999999998876542 27999999999988776443 34442 2 2333334433 3323468999997
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
... ..+...++.++.++|||||.+++..
T Consensus 118 ~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 431 2456789999999999999998864
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-08 Score=98.54 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=85.1
Q ss_pred CCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCce
Q 005981 246 GGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM 323 (666)
Q Consensus 246 gggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~ 323 (666)
|.|.||--...++.+-+...-.....+....++||||+|.|..+..++.. +|++.++|+.|. ..-+++|...
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~rL~~kg~~v- 139 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----WRLSKKGFTV- 139 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----HHHHhCCCeE-
Confidence 56777765655554444322111111235578999999999999999876 899999999874 3334566532
Q ss_pred EEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 324 VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 324 ~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+..++.-.+.+||+|.|.+++-.- .++..+|+++++.|+|+|.++++.
T Consensus 140 ---l~~~~w~~~~~~fDvIscLNvLDRc-~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 140 ---LDIDDWQQTDFKFDVISCLNVLDRC-DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---EehhhhhccCCceEEEeehhhhhcc-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 1223333345689999999885554 889999999999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.3e-06 Score=89.12 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=81.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----c-----ccccccccCCCCCCCC-CccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----G-----LIGVMHDWCEPFDTYP-RTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----G-----lig~~~~~ce~~~~yp-~tyDliha 588 (666)
..|||+|||+|-.+.+|++++- -..|+.+|. ..+++.+.+. + -+.++++.| +...+ .+||+|.|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P---~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~--l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP---QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA--LSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc--cccCCCCCEEEEEE
Confidence 3699999999999999988721 114555663 4566555432 2 134444333 33333 68999999
Q ss_pred ccccccCCCCC--CHHHHHHHhhhcccCCeEEEEEe--ChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 589 AGLFSVESKRC--NMSTIMLEMDRMLRPGGHVYIRD--SIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 589 ~~~f~~~~~~c--~~~~~l~E~dRiLRPgG~~ii~d--~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+--|...+... ....++.++.|+|||||.++|-- ......+|+++.. .+..... ..+.+||-++|
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~----~~kf~vl~a~k 373 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIAT----NNKFVVLKAVK 373 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEcc----CCCEEEEEEEe
Confidence 87765432111 23578899999999999999963 2345566666543 2333222 23678888888
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=98.14 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=75.5
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCC--CCCCCeeEEEecc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLP--YPSQAFDLIHCSR 346 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lp--f~d~sFDlVv~s~ 346 (666)
..+|||+|||+|.++..++++ +|++||+.+.+...|+...+. .++.. .+...|+..+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 579999999999999999877 899999999988888766655 23322 34444655544 3345799999975
Q ss_pred cccccc-----------------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWT-----------------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~-----------------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
-.+.-. -+.+.+++...++||+||++.+..+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 433221 2245788889999999999999954
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=96.89 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHH------------HHHcCCCceEEeecccCCCCC---C
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQF------------ALERGAPAMVAAFATRRLPYP---S 336 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~------------a~~rg~~~~~~~~d~e~Lpf~---d 336 (666)
...+||+.|||.|.-+.+|+++ +|+|+|+|+..+..+..+. ...++....+.+.|.-.++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 3469999999999999999988 9999999998887654321 011233445666677777532 2
Q ss_pred CCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEEC
Q 005981 337 QAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st~ 377 (666)
+.||+|+-..+++++.++.. .+.+.+.++|+|||.+++.+.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 68999998788888865543 899999999999999888754
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-08 Score=98.08 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC----CCCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~----Lpf~d~sFDlVv~ 344 (666)
.++.+|||+|||+|.++..+++. .|+++|+++.|+.... +.++++. +......|... .++. ++||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~~-nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEERK-NIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhcC-CcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 34579999999999999888765 6999999999887654 3444331 22233334332 1223 56999985
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
... ..+ ....++.++.|+|||||.++++
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEE
Confidence 422 111 1235689999999999999996
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-08 Score=95.83 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=63.4
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~ 337 (666)
++.+.+.+... .....|.|+|||.+.++..+.+. .|...|+... ...+...|+..+|++++
T Consensus 60 vd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS----TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhc---CCCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCC
Confidence 34444555421 23468999999999999888765 7999998642 12356678899999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 338 sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.|++++..+++. .+...++.|+.|+||+||.|.+++.
T Consensus 122 svDv~VfcLSLMG--Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 122 SVDVAVFCLSLMG--TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp -EEEEEEES---S--S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEEhhhhC--CCcHHHHHHHHheeccCcEEEEEEe
Confidence 9999998766444 5889999999999999999999964
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-08 Score=100.19 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=81.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
.+||+|||.|.-|.+|+++|++|...-..++.-.....+|.+++| |.+...-.+.+. ++..||+|.+..+|.+.. +-
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~~~yD~I~st~v~~fL~-~~ 110 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FPEEYDFIVSTVVFMFLQ-RE 110 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEEEEESSGGGS--GG
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-ccCCcCEEEEEEEeccCC-HH
Confidence 599999999999999999999555544444433445567777888 444433333333 468999999988888877 45
Q ss_pred CHHHHHHHhhhcccCCeEEEEE---eC--------hhH---HHHHHHHHHhcCcEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPGGHVYIR---DS--------IDV---MDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii~---d~--------~~~---~~~~~~i~~~l~W~~~~~~ 645 (666)
.++.++..|..-|+|||+++|- +. .+. -++|..... .|++....
T Consensus 111 ~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 111 LRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred HHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 7789999999999999999883 11 112 355666666 59986543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-08 Score=91.02 Aligned_cols=97 Identities=25% Similarity=0.353 Sum_probs=68.4
Q ss_pred eEeeccccchHHHHHHhh--CCCceEEEEeeccCC-CCChhHHHhcc----c---cccccccCCCCCCCCCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSG-FNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~--~~~~vwvmnv~~~~~-~~~l~~~~erG----l---ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
.|||+|||.|.++.+|++ .+. .|+.+|. +.+++.+.++- + |.+++.-.+.....+..||+|.+.+
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA-----RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS-----EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 589999999999999999 677 5666663 56777766654 3 5555444311233456799999998
Q ss_pred -ccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 591 -LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 591 -~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+..+-.......+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22222211334688999999999999999975
|
... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-08 Score=93.64 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=62.5
Q ss_pred EEEeCCcchHHHHHHHHHHHc--C-CCceEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEE
Q 005981 298 ITMSIAPKDVHENQIQFALER--G-APAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 298 ~gvDiS~~~l~~a~~~~a~~r--g-~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~ 374 (666)
+|+|+|+.|+..|+.+..... + ....+...|++++|+++++||+|+++.+++++ .+...+|++++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999988764432211 1 12345666789999999999999988776555 8899999999999999999998
Q ss_pred EEC
Q 005981 375 AAQ 377 (666)
Q Consensus 375 st~ 377 (666)
.+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 865
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.4e-08 Score=102.70 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=77.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHH---Hh----ccccccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI---YD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~---~e----rGlig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
+.|||+|||.|.++.+|+..|.. .|+.+|. ..++..+ .. .+.+.+...-.|.++. +.+||+|.|.++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~----~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gv 197 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK----SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGV 197 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcch
Confidence 46999999999999999988752 4566663 3444321 11 1122222222333332 358999999998
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeC----h--------h------------HHHHHHHHHHhcCcEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----I--------D------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~----~--------~------------~~~~~~~i~~~l~W~~~~ 643 (666)
+.|.. +..++|.|+.|+|||||.+|+.+. . + ....++..+++..++...
T Consensus 198 L~H~~---dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 198 LYHRK---SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred hhccC---CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 88764 457999999999999999998621 0 0 135667778888887653
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=106.89 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=67.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH--HHhc--c---ccccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV--IYDR--G---LIGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~--~~er--G---lig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
+.|||+|||.|.++.+|++.|.. .|+.+|. +.++.. +..+ + -+-+.+.-.|.++. +.+||+|+|.++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~----~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK----LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 56999999999999999998742 2555653 333321 1111 1 13344444455554 789999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.|.. +...+|.++.|+|||||.+||.
T Consensus 199 l~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 199 LYHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hhccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 87754 4579999999999999999986
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.5e-08 Score=106.98 Aligned_cols=101 Identities=25% Similarity=0.391 Sum_probs=74.5
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhcc--c-cccccccCCCCCCCCCccc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG--L-IGVMHDWCEPFDTYPRTYD 584 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erG--l-ig~~~~~ce~~~~yp~tyD 584 (666)
+.+++..+. .|||+|||.|+++.+|++. |+ .|+.+| ++.+++.+.+|. + +.+... .+...+.+||
T Consensus 161 ~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~-----~V~giDlS~~~l~~A~~~~~~l~v~~~~~---D~~~l~~~fD 230 (383)
T PRK11705 161 RKLQLKPGM--RVLDIGCGWGGLARYAAEHYGV-----SVVGVTISAEQQKLAQERCAGLPVEIRLQ---DYRDLNGQFD 230 (383)
T ss_pred HHhCCCCCC--EEEEeCCCccHHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHhccCeEEEEEC---chhhcCCCCC
Confidence 445555553 5999999999999999986 65 566666 467888887763 3 222221 1222367999
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|.+.++|.+.+. .+.+.++.++.|+|||||++++.
T Consensus 231 ~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 231 RIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999988754 34678999999999999999996
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.4e-08 Score=98.12 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=69.0
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||+|-++.+|+++ +. +|+.+| +++|++.+.+++ ...+..+|.++.-+++||+|.+...+.+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~-----~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~-- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY-----YVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS-- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC-----EEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc--
Confidence 46999999999999999988 44 788888 579999998874 33456666665334999999998766544
Q ss_pred CCCHHHHHHHhhhcccCCe
Q 005981 598 RCNMSTIMLEMDRMLRPGG 616 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG 616 (666)
-+.+.+|.||.|+|||.+
T Consensus 124 -~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCHHHHHHHHHHHhcCce
Confidence 356899999999999954
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-07 Score=96.69 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=71.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-C----CCceEEeecccC-CCCCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-G----APAMVAAFATRR-LPYPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-g----~~~~~~~~d~e~-Lpf~d~sFDlV 342 (666)
..+++||+||||+|..+..++++ +|+++|+++.++..++..+.... + ....+...|... +....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999988765 79999999998887765443321 1 112333344322 23346789999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
++... .++... ...+++.+.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 97533 333222 1477899999999999998864
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-08 Score=101.03 Aligned_cols=101 Identities=28% Similarity=0.505 Sum_probs=81.4
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChh----HHHhccc---ccc-ccccCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLP----VIYDRGL---IGV-MHDWCEPFDT 578 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~----~~~erGl---ig~-~~~~ce~~~~ 578 (666)
.+.++++.|.- |||+|||.|+++.+++++ |+ +|+.++ +++++. .+.++|+ +.+ ++|| ..
T Consensus 65 ~~kl~L~~G~~--lLDiGCGWG~l~~~aA~~y~v-----~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd 133 (283)
T COG2230 65 LEKLGLKPGMT--LLDIGCGWGGLAIYAAEEYGV-----TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RD 133 (283)
T ss_pred HHhcCCCCCCE--EEEeCCChhHHHHHHHHHcCC-----EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----cc
Confidence 45677888876 999999999999999998 66 666666 356664 4556788 444 5777 45
Q ss_pred CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 579 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+...||-|-|.++|.|.+. .+..+.+.-++++|+|||.+++-
T Consensus 134 ~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 134 FEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 5556999999999999886 46789999999999999999984
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=97.45 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=78.3
Q ss_pred eeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEecccccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
-.+|||+|||.|.++.+|+++ +. +|+.+|. +.+++.+.++-- +.+...-.+.+. .+.+||+|+|+.+|.+
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~-----~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAA-----RITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhh
Confidence 357999999999999999886 33 5667774 578887766621 333333333222 2379999999988876
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe--Ch--hHHHHHHHHHHhcCcEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD--SI--DVMDELQEIGKAMGWHV 641 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d--~~--~~~~~~~~i~~~l~W~~ 641 (666)
..+ ...+|.++.|+|||||.+++.- .. .....++++.....|..
T Consensus 106 ~~d---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 106 LPD---HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 654 4789999999999999999962 11 11223455555555653
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-07 Score=100.56 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHc------C----CCceEEeeccc------CCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------G----APAMVAAFATR------RLPY 334 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~r------g----~~~~~~~~d~e------~Lpf 334 (666)
+..+|||+|||-|.-...+... .++|+|++...+.+|+.+...-+ . ..+.+...|.. .++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5689999999988655444433 89999999999998887663211 1 12233333311 1222
Q ss_pred CCCCeeEEEecccccccccChH---HHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~---~~L~el~RvLkPGG~lv~st~ 377 (666)
....||+|-|..++|+.....+ .+|..+.+.|+|||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2359999998888666655543 689999999999999999975
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-07 Score=93.71 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
+.+++.+...+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.+..........+...|...
T Consensus 94 e~l~~~~~~~~~~----~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 94 EELVEWALEALLL----KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred HHHHHHHHHhccc----cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 3445555433321 34468999999999988887653 799999999988777654441111122333334322
Q ss_pred CCCCCCCeeEEEeccccccc------c-------------------cChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINW------T-------------------RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~------~-------------------~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++..++||+|+++...... . .....++.++.++|+|||++++..
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2335789999986332211 0 012357788889999999999864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=90.87 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=83.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++ |+ +.++ -|+.+ ..+.+||+|.++--|.
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGK-----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYL 93 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCC
Confidence 599999999999999999864 4666663 5666555442 33 3333 23322 2247999999986664
Q ss_pred cCCC------------------CCCHHHHHHHhhhcccCCeEEEEEeChhH-HHHHHHHHHhcCcEEEEEec
Q 005981 594 VESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 594 ~~~~------------------~c~~~~~l~E~dRiLRPgG~~ii~d~~~~-~~~~~~i~~~l~W~~~~~~~ 646 (666)
+..+ ++.++.+|.++.|+|+|||.+++.+.... ...+.+.++...|+.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 3221 12256889999999999999999876554 77888888888998877654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-07 Score=98.18 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=76.0
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
..+.+++.+.+.+. +..+|||+|||+|.++..++.. +|+++|+|+.++..++.+ +...+....+...|.
T Consensus 237 eTE~LVe~aL~~l~------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl 309 (423)
T PRK14966 237 ETEHLVEAVLARLP------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSW 309 (423)
T ss_pred cHHHHHHHhhhccC------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcch
Confidence 34455666555443 2258999999999998877642 899999999999888754 344454444544554
Q ss_pred cCCCC-CCCCeeEEEecccccccc--------------------cC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 330 RRLPY-PSQAFDLIHCSRCRINWT--------------------RD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 e~Lpf-~d~sFDlVv~s~~l~h~~--------------------~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
....+ ..++||+|+|+--.+.-. .+ ...++.++.+.|+|||.+++..
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33222 245899999865432110 01 1256667788999999998864
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=95.05 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=71.9
Q ss_pred CeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHH-HcCCCceEEeecccCC--CCCCCCeeEEEecc
Q 005981 276 RVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRL--PYPSQAFDLIHCSR 346 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~-~rg~~~~~~~~d~e~L--pf~d~sFDlVv~s~ 346 (666)
.+||+||||.|....-|.+. .|.+.|+|+..+...+.+... +....+.+...+.+.+ +...+++|+|++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999777666543 699999999876543321111 1112333333333333 45679999999988
Q ss_pred cccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
++..+.++. ..++.+++++|||||.+++...
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 877776554 4899999999999999999965
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.1e-08 Score=96.10 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=85.6
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccC-CCCCC-C-CCccceEEe
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWC-EPFDT-Y-PRTYDLLHA 588 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~c-e~~~~-y-p~tyDliha 588 (666)
-.+|||+|||+|.++..|+++.-. .+|+.+| ++.+++.+.++ |+ +.+.+.-. +.++. + +.+||+|.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~---~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD---INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC---ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 357999999999999999876211 1566666 35666666542 44 44455444 44442 4 489999987
Q ss_pred ccccc-----cCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEEe
Q 005981 589 AGLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 589 ~~~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~~ 645 (666)
..... +...+...+.+|.++.|+|||||.++|. +.......+.+.+..-.|++.+.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSEA 180 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccccc
Confidence 63221 1122233578999999999999999996 677778888888888888887543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=90.44 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=88.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----c-----ccccccccCCCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----G-----LIGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----G-----lig~~~~~ce~~~~yp~tyDliha~ 589 (666)
..|||+|||.|.++..|++++. +|+.+|. +.++..+.++ | +.-+.+|+.+.+. +.+||+|-++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--GDKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--ccCceEEEEC
Confidence 3699999999999999999876 5555553 4555555322 2 3223455654432 2589999887
Q ss_pred cccccCC------------------CCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEEEeccCCC
Q 005981 590 GLFSVES------------------KRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETAEGP 650 (666)
Q Consensus 590 ~~f~~~~------------------~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~~~~~~~~ 650 (666)
.-|.... ....+..++.++.|+|||||++++-.. ....+.+.+.+....|++.....+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 5553311 022256789999999999999988633 334677888999999987655443333
Q ss_pred CCceEEEEEEe
Q 005981 651 HASYRILTADK 661 (666)
Q Consensus 651 ~~~e~~l~~~k 661 (666)
.+.-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 44445555554
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.7e-08 Score=91.35 Aligned_cols=97 Identities=21% Similarity=0.394 Sum_probs=71.9
Q ss_pred eeEeeccccchHHHHHHhh-C--CCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCC-CCCccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIE-Q--KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~-~--~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~-yp~tyDliha 588 (666)
-+|||+|||+|.++..|++ . +. +++.+| ++.+++.+.++ |+ +-+.+..-+.++. |+..||+|.+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~-----~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA-----KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS-----EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC-----EEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEE
Confidence 3699999999999999994 3 44 577777 46788777773 55 4455444333332 4489999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
.+++.+.. +...+|.+|-|.|+|||.+++++..
T Consensus 80 ~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98885544 3468999999999999999999766
|
... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=97.42 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEecccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++. ..+...|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 468999999999999888754 799999999999888754 4445543 2334444322 2345689999986221
Q ss_pred cc----------cccC--------------hHHHHHHHHHhccCCeEEEEEE
Q 005981 349 IN----------WTRD--------------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h----------~~~d--------------~~~~L~el~RvLkPGG~lv~st 376 (666)
.. +..+ ...++.++.++|+|||.+++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 0001 1366888999999999999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-08 Score=97.74 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=103.1
Q ss_pred cCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccc-cccCCCCC--CCCCccceEEec
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM-HDWCEPFD--TYPRTYDLLHAA 589 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~-~~~ce~~~--~yp~tyDliha~ 589 (666)
...|..|.+||+|||+|-+|-+|.+.-. -+..+| +.|||..+.|+|+.-.+ |.-...|. .-++-||||-+.
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~-----~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD-----RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh-----hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhh
Confidence 4566799999999999999999987622 466677 57999999999994433 54444455 346899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE-----eCh-----------hHHHHHHHHHHhcCcEEEEEe-----ccC
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-----DSI-----------DVMDELQEIGKAMGWHVTLRE-----TAE 648 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-----d~~-----------~~~~~~~~i~~~l~W~~~~~~-----~~~ 648 (666)
+||...+. ++.++.-+.+.|.|||.|+|+ |.- .....|...+++-.-++.... .+.
T Consensus 196 DVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~ 272 (287)
T COG4976 196 DVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDA 272 (287)
T ss_pred hHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhc
Confidence 99998875 479999999999999999998 111 114568888888888865331 122
Q ss_pred CCCCceEEEEEEeC
Q 005981 649 GPHASYRILTADKR 662 (666)
Q Consensus 649 ~~~~~e~~l~~~k~ 662 (666)
|.-.+..+.|++|+
T Consensus 273 g~pv~G~L~iark~ 286 (287)
T COG4976 273 GEPVPGILVIARKK 286 (287)
T ss_pred CCCCCCceEEEecC
Confidence 22344456666664
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=98.19 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=71.1
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC--
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-- 331 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-- 331 (666)
...|+.-+..+. -.+..+|||+|||+|.++.++++. .|+++|+++.++... .+.+..+. .......|+..
T Consensus 118 aa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL-l~~ak~r~-NI~~I~~Da~~p~ 194 (293)
T PTZ00146 118 AAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL-TNMAKKRP-NIVPIIEDARYPQ 194 (293)
T ss_pred HHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH-HHHhhhcC-CCEEEECCccChh
Confidence 334444444321 135579999999999999998875 699999998655332 23444331 22233334322
Q ss_pred -CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 332 -LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 -Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.....+||+|++... +. ++...++.++.++|||||+|++.
T Consensus 195 ~y~~~~~~vDvV~~Dva--~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA--QP-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhhcccCCCCEEEEeCC--Cc-chHHHHHHHHHHhccCCCEEEEE
Confidence 2223458999997653 21 33446777999999999999996
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=93.95 Aligned_cols=107 Identities=15% Similarity=0.338 Sum_probs=75.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHH----hccc--cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIY----DRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~----erGl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.+|||+|||+|.++..|+..+-+ ..|+.+|. +.+++++. +.|+ +.+.+.-.+.+. ...+||+|.|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~---~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE---LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC---CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 46999999999988888754211 24667774 45554443 3465 555655555542 358999999874 1
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhc
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM 637 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l 637 (666)
..+++++.++.|+|||||.+++.+......++..+.+++
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC 157 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh
Confidence 356789999999999999999997777777777766663
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.5e-07 Score=94.15 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=68.4
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|... ++++++||+|+++.-.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 58999999999988888753 899999999998877754 4444543 2344344322 34445899999862211
Q ss_pred ------------cccc------------ChHHHHHHHHHhccCCeEEEEEE
Q 005981 350 ------------NWTR------------DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 ------------h~~~------------d~~~~L~el~RvLkPGG~lv~st 376 (666)
++.+ ....++.++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1101 12367888999999999998874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-07 Score=106.28 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=79.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccC-CCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWC-EPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~c-e~~~~yp~tyDliha~ 589 (666)
+.|||+|||+|+|+.+++..|.. .|+.+|. +..++.+.+. |+ +.+++.-+ +.+..+.++||+|-++
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 46999999999999999998762 4666774 5666655442 33 22332222 1122235789999986
Q ss_pred cc-cccCCC-------CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEec
Q 005981 590 GL-FSVESK-------RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 590 ~~-f~~~~~-------~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
-= |..... .-++..++...-|+|+|||.+++...........+.+..-++++.+...
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 21 211110 1124578888899999999999975555444556777777888876643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-07 Score=101.30 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--CCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--f~d~sFDlVv~s~~ 347 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+ +...|....+...|...++ +..++||.|++...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n-~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN-LQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 4578999999999988887653 799999999999887644 4445555445555655543 34578999994321
Q ss_pred c-----------cccccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 R-----------INWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l-----------~h~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. +.|... ...+|.++.++|||||.+++++-
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 112111 12689999999999999999974
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.8e-07 Score=92.26 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=83.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||.|..+.++++.|.. .|+.+|. +.+++.+.++.- -++ .+..+ +..-..+||+|.|+-..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~----~v~giDis~~~l~~A~~n~~~~~~-~~~~~-~~~~~~~fD~Vvani~~----- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK----KVLAVDIDPQAVEAARENAELNGV-ELNVY-LPQGDLKADVIVANILA----- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC----eEEEEECCHHHHHHHHHHHHHcCC-CceEE-EccCCCCcCEEEEcCcH-----
Confidence 46999999999999999888763 2555553 456666655421 111 01100 00001279999987321
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
-.+..++.++.|+|||||++|+++-. +....+.+.++...+++.....+. ....++++|+
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~----~W~~~~~~~~ 250 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERG----EWVALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeC----CEEEEEEEeC
Confidence 12457889999999999999999754 356788888999999887655433 3566676663
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-07 Score=99.16 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=84.9
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccc---cccccccCCCCCCCCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
..|||+|||+|.++..|++. +. .+|+.+| ++.+++.+.++.- +.+.+...|.++.-+.+||+|.+.+++.+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~----~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC----CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 36999999999999888765 21 2566666 3678888777531 44455555544433489999999988877
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEeChh-----------------HHHHHHHHHHhcCcEEEEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-----------------VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-----------------~~~~~~~i~~~l~W~~~~~ 644 (666)
..+. +.+|.|+.|+|||||.+++.+... ..+++.+++++..++....
T Consensus 191 ~~d~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 191 WPDP---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCCH---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 6654 689999999999999998864211 2467778888888875433
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-07 Score=88.88 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
...+|||||||+|.++..++++ +|+++|+++.++..++..... .....+...|+.++++++..||.|+++.. .+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 3468999999999999999876 899999999888766544322 11234555677888877778999997543 444
Q ss_pred ccChHHHHHHHHH--hccCCeEEEEE
Q 005981 352 TRDDGILLLEVNR--MLRAGGYFAWA 375 (666)
Q Consensus 352 ~~d~~~~L~el~R--vLkPGG~lv~s 375 (666)
. ...+..+.+ .+.++|.+++.
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEE
Confidence 2 233333332 24578888776
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-07 Score=91.21 Aligned_cols=106 Identities=23% Similarity=0.288 Sum_probs=72.7
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc--cc---cccccccCCCCCCCCCcc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR--GL---IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er--Gl---ig~~~~~ce~~~~yp~ty 583 (666)
+.+.+..+ ..|||+|||.|.++..+++...+ .-+|+.+|. +.+++.+.++ +. +.+...--+.++.-+.+|
T Consensus 13 ~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~--~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 13 ELLAVQPG--DRVLDVGCGPGNDARELARRVGP--EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 33444443 35999999999999999876200 015666663 5777888776 21 222222212222223899
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|+|++..+|.+..+ ...++.++.|+|||||++++.+
T Consensus 89 D~v~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHLED---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence 99999998888765 4789999999999999999864
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-07 Score=96.85 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=68.8
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++. ..+...|... .+++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999998888754 899999999999887754 4444543 2334444322 23456899999863211
Q ss_pred c------------ccc--------C----hHHHHHHHHHhccCCeEEEEEE
Q 005981 350 N------------WTR--------D----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 h------------~~~--------d----~~~~L~el~RvLkPGG~lv~st 376 (666)
. +.+ + ...++.++.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 100 0 1367889999999999999874
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-07 Score=95.83 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcC------CCceEEeec------ccCCCCCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG------APAMVAAFA------TRRLPYPSQA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg------~~~~~~~~d------~e~Lpf~d~s 338 (666)
+...+||+|||-|.-....-.+ .++|+||+...+.+|+.+.-.-++ ..+.+..+| .+.+++.+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 4467999999999665555444 899999999999888765543222 123444443 2445666777
Q ss_pred eeEEEecccccccc-cC---hHHHHHHHHHhccCCeEEEEEEC
Q 005981 339 FDLIHCSRCRINWT-RD---DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 339 FDlVv~s~~l~h~~-~d---~~~~L~el~RvLkPGG~lv~st~ 377 (666)
||+|-|..+ +|+. .. ...+|+++.+.|||||+|+-+.+
T Consensus 197 fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 999988777 5554 33 34789999999999999987743
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=9e-07 Score=87.44 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCCCc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp~t 582 (666)
..+.+..+ .+|||+|||.|.++.++++++-+ .+|+.+|. +.+++.+.+ .|+ +.+..... ...++..
T Consensus 25 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~--~~~~~~~ 97 (187)
T PRK08287 25 SKLELHRA--KHLIDVGAGTGSVSIEAALQFPS---LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA--PIELPGK 97 (187)
T ss_pred HhcCCCCC--CEEEEECCcCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc--hhhcCcC
Confidence 33444433 46999999999999999876311 24666663 455655543 233 33332221 1234578
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcCcE
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~W~ 640 (666)
||+|.+.+.. ..+..++.++.|+|+|||++++.+ ..+...++.+++++.+|+
T Consensus 98 ~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 98 ADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred CCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 9999987432 346789999999999999999986 456677888889888885
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=92.60 Aligned_cols=86 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
....|.|+|||.+.++... ...|..+|+.+. ...+..+|+.++|+++++.|++++..+ -+..
T Consensus 180 ~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhcc
Confidence 3468999999999877521 128999987642 223556678899999999999996544 3346
Q ss_pred ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 354 DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...++.|++|+|++||.++++..
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEeh
Confidence 889999999999999999999963
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=96.58 Aligned_cols=95 Identities=7% Similarity=0.133 Sum_probs=69.1
Q ss_pred eeEeeccccchHHHHHHhhC----CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCC-CccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDli 586 (666)
..|||+|||.|.++..|+++ ++ +|+.+|. +.++..+.++ +. +.+.+.- +..+| ..+|+|
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~-----~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~d~v 126 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV-----KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND---IRHVEIKNASMV 126 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC-----eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECC---hhhCCCCCCCEE
Confidence 35999999999999998874 33 5667773 6788877664 22 3333333 22333 569999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.+..++.+..+. +...+|.++.|+|+|||.++++|.
T Consensus 127 ~~~~~l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFLPPE-DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eeecchhhCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence 998887776432 346899999999999999999975
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-07 Score=83.33 Aligned_cols=90 Identities=24% Similarity=0.355 Sum_probs=51.3
Q ss_pred eeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCC-CCCCC-CccceEEeccccc
Q 005981 523 LDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEP-FDTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 523 lD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~-~~~yp-~tyDliha~~~f~ 593 (666)
||+|||+|.+..+|+++. -...++.+| ++.+++.+.+| +. .....--+.. +...+ .+||+|.+..++.
T Consensus 1 LdiGcG~G~~~~~l~~~~---~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 799999999999998882 234566666 35666444333 22 1122212222 23333 5999999999999
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHV 618 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ 618 (666)
+. -++..+|..+.++|||||.+
T Consensus 78 ~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -----S-HHHHHHHHTTT-TSS-EE
T ss_pred hh---hhHHHHHHHHHHHcCCCCCC
Confidence 98 35689999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.3e-07 Score=89.00 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=90.1
Q ss_pred ccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc--cc--cccccccCCCCCC-CC-Cccce
Q 005981 513 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR--GL--IGVMHDWCEPFDT-YP-RTYDL 585 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er--Gl--ig~~~~~ce~~~~-yp-~tyDl 585 (666)
.+...+++++|++|||.|-|.+.|+.+.- .++.+|. +..++.+.+| ++ |.+.+.. ++. .| .+|||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd-----~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~d---vp~~~P~~~FDL 109 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD-----RLLAVDISPRALARARERLAGLPHVEWIQAD---VPEFWPEGRFDL 109 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE-----EEEEEES-HHHHHHHHHHTTT-SSEEEEES----TTT---SS-EEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC-----ceEEEeCCHHHHHHHHHhcCCCCCeEEEECc---CCCCCCCCCeeE
Confidence 36889999999999999999999999843 4455552 4677777776 33 3333322 222 24 99999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------HHHHHHHHHHhcCcEEEEEeccCCCCCceE
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------VMDELQEIGKAMGWHVTLRETAEGPHASYR 655 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~ 655 (666)
||++.++-.+.+.-++..++..+...|+|||.+|+-+-.+ -.+.|.+++...-=++.-..-..+ ...|.
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~-~~~~~ 188 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGG-SPNED 188 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-S-STTSE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCC-CCCCc
Confidence 9999999888876667789999999999999999953322 146677776666556544433222 23455
Q ss_pred EEEE
Q 005981 656 ILTA 659 (666)
Q Consensus 656 ~l~~ 659 (666)
-|++
T Consensus 189 ~~~~ 192 (201)
T PF05401_consen 189 CLLA 192 (201)
T ss_dssp EEEE
T ss_pred eEee
Confidence 5544
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-06 Score=88.39 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=75.2
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
....+++.+...+... ....+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+. .+...|.
T Consensus 69 ~Te~Lv~~~l~~~~~~---~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~~--~~~~~D~ 142 (251)
T TIGR03704 69 RTEFLVDEAAALARPR---SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAGG--TVHEGDL 142 (251)
T ss_pred cHHHHHHHHHHhhccc---CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCC--EEEEeec
Confidence 3445556655544321 12358999999999998887643 7999999999988776543 33342 2333343
Q ss_pred cC-CCC-CCCCeeEEEecccccccc---------------------cC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RR-LPY-PSQAFDLIHCSRCRINWT---------------------RD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~-Lpf-~d~sFDlVv~s~~l~h~~---------------------~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+ ++- ..++||+|+++--.+... .+ ...++..+.++|+|||.+++...
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32 221 135799999875332110 01 12667778899999999999853
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=94.36 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=71.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~ 331 (666)
....+.+.+. + .+..+|||||||+|.++..+++. .|+++|+++.++..++.. +...+... .+...|...
T Consensus 68 l~a~ll~~L~-i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~-l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWVG-L---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhcC-C---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCChhh
Confidence 3445555543 1 34478999999999999888753 499999999988777643 34445443 333445444
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....+.||+|++.....+ ....+.+.|+|||.+++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 4444468999997643222 2345678999999998863
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-07 Score=96.71 Aligned_cols=95 Identities=8% Similarity=0.171 Sum_probs=69.9
Q ss_pred eeEeeccccchHHHHHHhhC----CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCC-CccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDli 586 (666)
..|||+|||+|..+.+|++. ++ .|+.+|. +.+++.+.++ |+ +.++....+ .+| ..||+|
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~-----~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~---~~~~~~~D~v 129 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC-----KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR---DIAIENASMV 129 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC-----eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh---hCCCCCCCEE
Confidence 35999999999999888762 33 5777774 6888888765 23 444444433 333 469999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.+..++.+... .....++.||.|+|||||.+++.|.
T Consensus 130 v~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 130 VLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99877776643 2346899999999999999999874
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=101.81 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceE--EeecccCCCC--CCCCeeEEEe-
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRRLPY--PSQAFDLIHC- 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~--~~~d~e~Lpf--~d~sFDlVv~- 344 (666)
++.+|||+|||+|..+..++.. +|+++|+++.++..++.+. +..|+...+ ...+....++ +.++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~-~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENL-KRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 4479999999999888776643 8999999999998776444 445655322 2233333333 4678999995
Q ss_pred ---ccc-ccccccC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 ---SRC-RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 ---s~~-l~h~~~d----------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.. .++-.++ ...+|.++.++|||||.++++|.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 221 1111122 24789999999999999999974
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-07 Score=93.52 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=70.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc--cccccccCCCCCCCCCccceEEeccccccCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl--ig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
..|||+|||.|.+..+|++.+..+ .++.+|. +.++..+.++.- +..+..-.+..+..+.+||+|.+..++.+..
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 569999999999999999885321 2455553 466666666532 3334444444444458999999998887654
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+...+|.++.|+|||||++++..
T Consensus 113 ---~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 ---DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 35799999999999999999974
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=6e-07 Score=93.95 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecc-
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR- 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~- 346 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+. +..++.. .+...|...++...+.||.|++..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4578999999999888776542 7999999999988776544 3445543 334445555554456799999521
Q ss_pred ---c-cc--------cccc--------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 ---C-RI--------NWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ---~-l~--------h~~~--------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+ .|.. ....+|.++.++|||||+++++|-
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 00 1111 112588999999999999999974
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=91.54 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=73.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~e~ 331 (666)
.|.+.+...+... ..+++|||||||+|.++..++.. +|+++|+++.++..++..+..... ....+...|...
T Consensus 52 ~y~~~m~~~l~~~---~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLFN---PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhcC---CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence 3455554433211 34578999999999999877654 899999999988776644332111 122334344321
Q ss_pred -CCCCCCCeeEEEecccc-ccccc--ChHHHHHHHHHhccCCeEEEEE
Q 005981 332 -LPYPSQAFDLIHCSRCR-INWTR--DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 -Lpf~d~sFDlVv~s~~l-~h~~~--d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.-..++||+|++...- ..... ....+++++.++|+|||.+++.
T Consensus 129 ~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 129 YIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 22223689999974311 11111 1258999999999999999986
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-07 Score=101.36 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC----CCCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP----YPSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp----f~d~sFDlVv 343 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+ +...|+.. .+...|...++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4578999999999888777643 799999999999877654 44456543 34444555554 4457899999
Q ss_pred ec----cc-ccccccC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CS----RC-RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s----~~-l~h~~~d----------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. .. .++-.++ ...+|.++.++|||||+++.+|-
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 52 11 1111111 24779999999999999999974
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-06 Score=88.15 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=71.7
Q ss_pred eEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
+|||+|||+|..+..++.. +|+|+|+|+..+..|+ +.+...++........ +-+.--.+.||+|+|+--.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~-dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQS-DLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEee-ecccccCCceeEEEeCCCCCCCc
Confidence 7999999999999888865 8999999999887776 4566666533222221 11111124899999875433321
Q ss_pred -----c-----Ch--------------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 005981 353 -----R-----DD--------------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (666)
Q Consensus 353 -----~-----d~--------------~~~L~el~RvLkPGG~lv~st~P~~~~~~el~ 387 (666)
+ ++ ..++.++.+.|+|||.+++-. .+.....+.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~--g~~q~~~v~ 247 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI--GLTQGEAVK 247 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE--CCCcHHHHH
Confidence 0 11 156778899999999998874 444444333
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-06 Score=88.53 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=67.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeecc-cCCCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRLPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d~-e~Lpf~d~sFDlVv~ 344 (666)
.+++||+||||+|.++..+.+. +++++|+++.++..++..+....+ ....+...|. +-+....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999988877654 799999999888777654433221 1112222232 112222478999997
Q ss_pred cccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
... .+.... ...+++.+.++|+|||.+++..
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 543 223222 2478899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-07 Score=94.22 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCC-CCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTY-PRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~y-p~tyDliha~~~f~ 593 (666)
.+|||+|||+|.++.++++.|. -.|+.+|. +.+++.+.++ |+-......+...... +..||+|+|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 4699999999999999988864 15666663 4666666554 3211111111112222 47999999974321
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEec
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
.+..++.++.|+|||||+++++.-. +....+.+.+++. |++....+
T Consensus 237 ------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 237 ------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred ------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 2457899999999999999998653 3456677777776 87665443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=98.94 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEe---
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHC--- 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~--- 344 (666)
++.+|||+|||+|..+..+++ ..|+++|+++.++..++. .+...|+.. .+...|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 347899999999987766653 279999999999987764 444556543 34444555554 4578999994
Q ss_pred -ccccc-------ccccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 -SRCRI-------NWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 -s~~l~-------h~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.... .|..+ ...+|.++.++|||||.++++|-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 22111 12111 12589999999999999999974
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7e-07 Score=99.78 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC-CCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp-f~d~sFDlVv~s~ 346 (666)
++.+|||+|||+|..+.+++.. +|+++|+++.++..++.+ +...|+.. .+...|...++ +..++||.|++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 4478999999999877666542 899999999999877644 44556543 34445555555 4467899999621
Q ss_pred cc---cccc--c----------------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CR---INWT--R----------------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l---~h~~--~----------------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. -.+. + ....+|.++.+.|||||.++++|-
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 1111 1 113668899999999999999974
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=88.71 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=73.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCC-------CC-CCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD-------TY-PRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~-------~y-p~tyDliha~~~f 592 (666)
.|||+|||+|+++.+|+++..+ .-.|+.+|-..+.+. .|+ -+++.-.+... .+ +.+||+|.|+...
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~--~~~V~aVDi~~~~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGD--KGRVIACDILPMDPI---VGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCC--CceEEEEecccccCC---CCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 6999999999999999886210 013444443222211 233 23333333322 13 3789999997543
Q ss_pred ccCCCCC--------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhc--CcEE-EEE-eccCCCCCceEEEEEE
Q 005981 593 SVESKRC--------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM--GWHV-TLR-ETAEGPHASYRILTAD 660 (666)
Q Consensus 593 ~~~~~~c--------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l--~W~~-~~~-~~~~~~~~~e~~l~~~ 660 (666)
....... ..+.+|.|+.|+|||||.|++..-.. +.+++++..+ +|+. .+. +...-....|..+||.
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence 3322211 12578999999999999999963221 1112222222 3332 222 2222235679999997
Q ss_pred e
Q 005981 661 K 661 (666)
Q Consensus 661 k 661 (666)
.
T Consensus 206 ~ 206 (209)
T PRK11188 206 G 206 (209)
T ss_pred c
Confidence 4
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-07 Score=96.74 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=65.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||.|.+++.|++....+-..+|+.+| ++.++..+.++.- +.+.....+.++.-+.+||+|.+. |.
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~--~~---- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI--YA---- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe--cC----
Confidence 469999999999999998752111112577788 4789998877743 444433333444223899999975 22
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
+..+.|+.|+|||||++++....
T Consensus 161 ----~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 ----PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ----CCCHHHHHhhccCCCEEEEEeCC
Confidence 23468999999999999997543
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=89.90 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=78.1
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEE------EEeeccC-CCCChhHHHhcc----c-----cccccccCCCCCCCC-C
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWV------MNVVPVS-GFNTLPVIYDRG----L-----IGVMHDWCEPFDTYP-R 581 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwv------mnv~~~~-~~~~l~~~~erG----l-----ig~~~~~ce~~~~yp-~ 581 (666)
--++|||+||+|-.|..+.+. |-. -+|+-.| ++.||.++.+|. | .-..-...|.++ || .
T Consensus 101 ~m~~lDvaGGTGDiaFril~~---v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~ 176 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRH---VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDD 176 (296)
T ss_pred CCeEEEecCCcchhHHHHHHh---hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCC
Confidence 367999999999999888876 111 3455555 478997777665 4 223334567788 77 9
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHH-HHHHHHHHhc
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM-DELQEIGKAM 637 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~-~~~~~i~~~l 637 (666)
+||+...+.-+- +--+++.+|.|+.|||||||.|.+=+=..+- +.|+.+.+.-
T Consensus 177 s~D~yTiafGIR---N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 177 SFDAYTIAFGIR---NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred cceeEEEeccee---cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence 999998773333 3345689999999999999999987644443 4555555443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-07 Score=93.64 Aligned_cols=92 Identities=18% Similarity=0.340 Sum_probs=74.5
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-ccccccc----CCCCCCCC-CccceEEecccccc
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDW----CEPFDTYP-RTYDLLHAAGLFSV 594 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~----ce~~~~yp-~tyDliha~~~f~~ 594 (666)
|||+|||-|.++..|+..|+ +|+.+|. +.++++|..+.+ -|+.-++ -|.+. -. .+||+|-|..++.|
T Consensus 63 vLDvGCGgG~Lse~mAr~Ga-----~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 63 VLDVGCGGGILSEPLARLGA-----SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred EEEecCCccHhhHHHHHCCC-----eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 99999999999999999998 8999995 789999987766 3333232 11111 12 59999999999999
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..+. +.+|.+..+.|||||.++++.
T Consensus 137 v~dp---~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 137 VPDP---ESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred cCCH---HHHHHHHHHHcCCCcEEEEec
Confidence 8765 689999999999999999984
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.7e-07 Score=94.69 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=66.2
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
+|||+|||.|..+..+++. |.+ ..|+.+|. +.+++.+.++ |+ +.+.+.--|.++.-+++||+|++..++
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~~---~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGPT---GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCCC---CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 6999999999876655543 321 14666663 5778777664 33 223333334333223799999999887
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+..+ ...++.|+.|+|||||++++.|
T Consensus 157 ~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 157 NLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 76543 4789999999999999999975
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.36 E-value=8e-07 Score=89.56 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...++||.|+|.|..+..|+-. .|..+|..+..+..|+..+.........+....++++..+.++||+|++..|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4578999999999999877654 8888999988887776443332222223333346776655689999999999999
Q ss_pred cccC-hHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTRD-DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~d-~~~~L~el~RvLkPGG~lv~st 376 (666)
+.++ .-.+|+++...|+|||.+++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 9533 3499999999999999999985
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-07 Score=84.43 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=65.6
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----c-cccccccCCCCCCCCCccceEEeccc-ccc
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IGVMHDWCEPFDTYPRTYDLLHAAGL-FSV 594 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG----l-ig~~~~~ce~~~~yp~tyDliha~~~-f~~ 594 (666)
|||+|||.|....+|++..-.---..++.+| ++.++..+.++. + +..++.-++.++....+||+|-|.+. |.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998762000013677777 478998888877 3 44555555544433379999999666 666
Q ss_pred CCCCCCHHHHHHHhhhcccCCe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGG 616 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG 616 (666)
.. .-.++.++.++-|+|||||
T Consensus 81 ~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SS-HHHHHHHHHHHHHTEEEEE
T ss_pred CC-HHHHHHHHHHHHHHhCCCC
Confidence 44 3467899999999999998
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=87.62 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=69.7
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT 329 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~ 329 (666)
......+++.+. + +++.+|||||||+|.+++.|+.. .|+++|..+.....|+..+... +.. ..+...|.
T Consensus 58 P~~~a~~l~~L~-l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~-~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALD-L---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL-GIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTT-C----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH-TTHSEEEEES-G
T ss_pred HHHHHHHHHHHh-c---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh-ccCceeEEEcch
Confidence 345666677765 2 45689999999999888877743 5899999998777776555443 443 33444442
Q ss_pred -cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 330 -RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 -e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..++ ....||.|++....... -..+.+.||+||.+++--
T Consensus 133 ~~g~~-~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWP-EEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTG-GG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEE
T ss_pred hhccc-cCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEE
Confidence 3332 34689999987653222 244677899999998863
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=87.12 Aligned_cols=99 Identities=26% Similarity=0.400 Sum_probs=68.3
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-CC--CCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP--YPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~-Lp--f~d~sFDlVv~s~~ 347 (666)
..+||||||.|.+...++.. +++|+|+...-+..+..+ +.+.++.+ .+...++.. +. ++++++|.|+....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~-~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRK-AEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHH-HHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHH-HHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999998888754 899999999888777644 44446655 344444443 22 56799999985543
Q ss_pred ccccccC--------hHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRD--------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d--------~~~~L~el~RvLkPGG~lv~st 376 (666)
-.|... ...++..+.++|+|||.+.+.|
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 555321 1378999999999999999997
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5e-07 Score=103.81 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=71.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCC-C-CCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDT-Y-PRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~-y-p~tyDliha~~~ 591 (666)
.+|||+|||+|.++.+|++..- ..+|+.+|. +.+++.+.++ |. +.+.+.-+..++. + |++||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P---~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE---DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 3699999999999998887511 126777773 5778777665 22 3334444555543 3 489999999876
Q ss_pred cccCC----------CCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 592 FSVES----------KRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 592 f~~~~----------~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+.++- +..++..+|.|+.|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 64321 123467999999999999999999874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.4e-06 Score=88.71 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-CC---CceEEeecccC-CC-CCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GA---PAMVAAFATRR-LP-YPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-g~---~~~~~~~d~e~-Lp-f~d~sFDlV 342 (666)
..+++||+||||.|.+++.+++. +|+.+|+++.++..++..+.... +. ...+...|... +. .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 35689999999999999988865 68899999988876665443321 11 12333334211 11 235689999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
++-.. .++... ...+++.+.++|+|||.++...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 96432 333221 1368899999999999997754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=87.31 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=78.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCC--CCC-CccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFD--TYP-RTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~--~yp-~tyDliha~ 589 (666)
..|||+|||.|.++.+|+.+.-+ .||+.+|. ..++..+.+ .|+ +-+.+.-.+.+. .+| .++|.|++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~---~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD---KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC---CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 46999999999999999987211 26777764 556655543 344 344444433222 245 599999876
Q ss_pred ccc-----ccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcC-cEEE
Q 005981 590 GLF-----SVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMG-WHVT 642 (666)
Q Consensus 590 ~~f-----~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~-W~~~ 642 (666)
.-- .|...|...+.+|.++.|+|||||.+++. |..+..+.+.+.+.... |+..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 211 12234555578999999999999999986 66666666666555443 5543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.1e-06 Score=84.09 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=80.3
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH----HHhc-cccccccccCCCC--CCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV----IYDR-GLIGVMHDWCEPF--DTYPR 581 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~----~~er-Glig~~~~~ce~~--~~yp~ 581 (666)
+.+++..+. .|||+|||+|++..+|++.- + --.|..+|. +.+++. +.++ ++..+..|-.++. ...+.
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v-~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIV-E--EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhc-C--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc
Confidence 346776664 49999999999999998861 0 013555553 445543 3333 3333333433221 11346
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE------eC----hhHHHHHHHHHHhcCcEEEEEeccCCCC
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR------DS----IDVMDELQEIGKAMGWHVTLRETAEGPH 651 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~------d~----~~~~~~~~~i~~~l~W~~~~~~~~~~~~ 651 (666)
+||+|-+.. . +.-....+|.|+.|+|||||+++|+ |. ....+...+.++.-..+.....+ -++.
T Consensus 141 ~~D~i~~d~--~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~-l~p~ 214 (226)
T PRK04266 141 KVDVIYQDV--A---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD-LEPY 214 (226)
T ss_pred cCCEEEECC--C---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc-CCCC
Confidence 799987541 1 1101134688999999999999993 32 22223344666666666543322 2332
Q ss_pred -CceEEEEEEeC
Q 005981 652 -ASYRILTADKR 662 (666)
Q Consensus 652 -~~e~~l~~~k~ 662 (666)
..+-.++++|+
T Consensus 215 ~~~h~~~v~~~~ 226 (226)
T PRK04266 215 HKDHAAVVARKK 226 (226)
T ss_pred cCCeEEEEEEcC
Confidence 34666777663
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=88.90 Aligned_cols=99 Identities=11% Similarity=0.184 Sum_probs=71.2
Q ss_pred ceeeEeeccccchHHHHHHhh----CCCceEEEEeeccC-CCCChhHHHhccc---cccccccCCCCCCCCCccceEEec
Q 005981 518 KLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~-~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
+-..|||+|||+|.++..|++ .|. ..+|+.+| ++.+++.+.++.- +.+...-++.++.-+.+||+|.|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGL---RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCC---CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 445799999999999888874 232 23688888 4789998887632 222333344455435899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+|.|..+. .+..+|.||.|+|| |.++|.|
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 999887653 34689999999999 5555554
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=78.34 Aligned_cols=97 Identities=18% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEe-ec-ccCCCCCCCCeeEEEecc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FA-TRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~-~d-~e~Lpf~d~sFDlVv~s~ 346 (666)
.++.+++|||||||+.+..++.. +|+++|-++..+...+. .+.+.+..+.... .+ -+.|+-. .+||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~-N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER-NAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH-HHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECC
Confidence 45689999999999999888721 99999999887766653 4444566654333 22 2333322 2799999765
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. ...+.+|..+...|||||.+++..
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 5 566899999999999999999985
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=89.54 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=66.1
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..++.+ +|+++|+++.++..++.. .....+...|+..+. .+++||+|+++..+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence 368999999999988777542 899999999887655432 112334445555554 3468999999877666
Q ss_pred cccC-------------------hHHHHHHHHHhccCCeEEEEE
Q 005981 351 WTRD-------------------DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 351 ~~~d-------------------~~~~L~el~RvLkPGG~lv~s 375 (666)
.... ....+..+.++|+|+|.+.+.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 4211 135667778899999976654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=84.94 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=67.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc----cccccccCCCCCCCCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL----IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl----ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
.+|||+|||.|.++.++++..-+ .-+++.+|. +..+..+.++.- +.+.+.-.+..+.-+.+||+|++..++.+
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~--~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPD--RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCC--CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 46999999999999999887321 014555553 456666666531 33333333333322378999999877655
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.. +...++.++.++|||||++++.+
T Consensus 119 ~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 VT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 45799999999999999999864
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-06 Score=84.09 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=73.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCC------CCCC-CccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPF------DTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~------~~yp-~tyDliha~~~f~ 593 (666)
+|||+|||+|+++.+++++... .-.|+.+|...+.. ..++--+..+..+.. ..++ .+||+|-++....
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~--~~~v~~vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~ 109 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGG--KGRVIAVDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN 109 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCC--CceEEEEecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence 6999999999999888776211 00244444322221 123321223433211 0133 6899999864321
Q ss_pred c--------CCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEEecc-CCCCCceEEEEEEe
Q 005981 594 V--------ESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLRETA-EGPHASYRILTADK 661 (666)
Q Consensus 594 ~--------~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~~~~-~~~~~~e~~l~~~k 661 (666)
. ....+.++.+|.++.|+|||||.+++. ...+.+.++-..++..=|.+.+...- ......|+++||..
T Consensus 110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence 1 111123468999999999999999994 22222222222222222556555332 22356799999963
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=94.26 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC--
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-- 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~-- 331 (666)
...+.+.+.+.. .+..+|||+|||+|.++..|+.. .|+|+|+++.++..++. .+...++. ..+...|+..
T Consensus 284 ~l~~~vl~~l~~----~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 284 KMVARALEWLDP----QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHhcC----CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhh
Confidence 345555555431 34478999999999999998875 89999999999988874 44445543 3344444432
Q ss_pred --CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 --LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 --Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++.+++||+|++.-.... ....+..+.+ ++|++.++++..
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 3355678999997543221 2345555555 699999999964
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-06 Score=85.16 Aligned_cols=114 Identities=17% Similarity=0.278 Sum_probs=70.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc----eEEeec
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA----MVAAFA 328 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~----~~~~~d 328 (666)
.+++.|.+.++. ...+|||||||||..+.+++.+ ...-.|..+..+..- .....+.+..+ ......
T Consensus 13 pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI-~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 13 PILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSI-RAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred HHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhH-HHHHHhcCCcccCCCeEeecC
Confidence 455556665552 2226999999999888887765 333445554332111 12333444332 222111
Q ss_pred ccCCCC------CCCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPY------PSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf------~d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st~ 377 (666)
....+. ..++||+|+|.++ +|+.+- .+.+|+.+.++|++||.|++.++
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 222333 2468999999988 666543 34899999999999999999964
|
The function of this family is unknown. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.5e-06 Score=83.35 Aligned_cols=98 Identities=24% Similarity=0.275 Sum_probs=66.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c---cccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
..|||+|||.|.++..+++.+-. .-.|+.+|. +.+++.+.++- + +.+.+.-.+.++.-+.+||+|++..+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGK--TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 35999999999999999887400 124555663 46666665541 2 33444333333322379999999866
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.+. .+...+|.++.++|+|||.+++.+
T Consensus 131 l~~~---~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNV---PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccC---CCHHHHHHHHHHhccCCcEEEEEE
Confidence 6443 456899999999999999999853
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.4e-06 Score=93.78 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp--f~d~sFDlVv~s 345 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...|+.. .+...|...+. ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 3478999999999988777652 79999999998877764 444456543 33444554442 33 789999964
Q ss_pred ccccc-----------cccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRIN-----------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h-----------~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.-... |... ...+|.++.++|||||.+++++.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 21110 1111 12578999999999999999874
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=89.95 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=82.4
Q ss_pred hhhhhhhHhHHHHHHHHHHh-cc-cCCCceeeEeeccccchH----HHHHHhhCCCc--eEEEEeeccC-CCCChhHHHh
Q 005981 492 ELFKAESKYWNEIIESYVRA-LH-WKKMKLRNVLDMRAGFGG----FAAALIEQKFD--CWVMNVVPVS-GFNTLPVIYD 562 (666)
Q Consensus 492 ~~f~~d~~~w~~~v~~Y~~~-l~-~~~~~iRnvlD~g~G~Gg----faa~L~~~~~~--vwvmnv~~~~-~~~~l~~~~e 562 (666)
-.|-.|...|....+..... +. ...++--.|+|+|||+|- .|..|++.+.. -|...|+.+| ++.+|+.|.+
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 34555666666544433221 11 112233579999999995 66666664211 1345788888 4688887754
Q ss_pred cccc----------------------------------cc-ccccCCCCCCC-CCccceEEeccccccCCCCCCHHHHHH
Q 005981 563 RGLI----------------------------------GV-MHDWCEPFDTY-PRTYDLLHAAGLFSVESKRCNMSTIML 606 (666)
Q Consensus 563 rGli----------------------------------g~-~~~~ce~~~~y-p~tyDliha~~~f~~~~~~c~~~~~l~ 606 (666)
|+. .. .||-.+. .+ ++.||+|.|..+|.+..+ -....++.
T Consensus 151 -~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~-~~~~~~l~ 226 (264)
T smart00138 151 -GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDE-PTQRKLLN 226 (264)
T ss_pred -CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCH-HHHHHHHH
Confidence 321 11 2344332 13 389999999988887653 23468999
Q ss_pred HhhhcccCCeEEEEEeChh
Q 005981 607 EMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 607 E~dRiLRPgG~~ii~d~~~ 625 (666)
++.|+|+|||++++-+...
T Consensus 227 ~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 227 RFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHhCCCeEEEEECccc
Confidence 9999999999999975544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.4e-06 Score=81.94 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=72.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeec-ccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFA-TRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d-~e~Lp 333 (666)
....+.+.+.- .++.+|||||||+|..++.|++. +|+++|..+.....|+.++. ..|..+ .+...| ...++
T Consensus 60 ~vA~m~~~L~~----~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLEL----KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLE-TLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCC----CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHH-HcCCCceEEEECCcccCCC
Confidence 45556666652 45689999999999999988876 99999999876666654443 345533 333333 34443
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+...||.|+...+.-.. + ..+.+.||+||.+++-.
T Consensus 135 -~~aPyD~I~Vtaaa~~v---P----~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 -EEAPYDRIIVTAAAPEV---P----EALLDQLKPGGRLVIPV 169 (209)
T ss_pred -CCCCcCEEEEeeccCCC---C----HHHHHhcccCCEEEEEE
Confidence 34789999977653333 2 34567899999998863
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-06 Score=85.75 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=75.9
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCC-C--CCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRL-P--YPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~L-p--f~d~sFDlVv~s~~ 347 (666)
..+||||||.|.+...++.+ +++||++...-+..+. +.+.+.++ +..+...|+..+ . +++++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999876 8999999988777665 56667788 555555553332 2 45669999996544
Q ss_pred ccccccCh--------HHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~--------~~~L~el~RvLkPGG~lv~st 376 (666)
-.|.... ..+++.+.++|+|||.+.+.|
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 6664321 378999999999999999997
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-06 Score=88.21 Aligned_cols=94 Identities=18% Similarity=0.338 Sum_probs=67.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCC-CCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFD-TYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~-~yp~tyDliha~~~f~ 593 (666)
.|||+|||.|.++..|.+.++ +|+.+|. +..+..+.++ ++ +.+.+.--+.++ ..+.+||+|.+..++.
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~-----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGA-----DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCC-----eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 499999999999999998876 5666663 4566666554 33 222222112222 1237999999998888
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+..+ ...+|.++.|+|+|||.+++.+
T Consensus 126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVPD---PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 7664 4689999999999999999975
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-06 Score=86.52 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=69.4
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCC-CccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp-~tyDliha~~~f~~ 594 (666)
..|||+|||+|.+..+|++. +. +++.+| ++.+++.+.++.- +.+.+.-... .++ ++||+|.|.+++.|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~-----~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFK-----HIYGVEINEYAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCC-----eEEEEECCHHHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhh
Confidence 45999999999999999886 44 577777 4688888877522 3344332222 344 89999999999998
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.. .-.+..+|.||.|++ +++++|.+
T Consensus 118 l~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 IN-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 75 345689999999998 57888864
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=74.91 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=63.6
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCCCCc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTYPRT 582 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~yp~t 582 (666)
.+.+..+. .|||+|||.|.++.+++++.-. .+|+.+|. +.+++.+.+ .|+ +.+...-.+. ....+.+
T Consensus 14 ~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 14 KLRLRPGD--VLWDIGAGSGSITIEAARLVPN---GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HcCCCCCC--EEEEeCCCCCHHHHHHHHHCCC---ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 34444443 7999999999999999886211 25666663 455555432 233 2222221111 1222468
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
||.|.+..... .+..++.++.|+|+|||++++.
T Consensus 89 ~D~v~~~~~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 99998864221 3468999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.3e-06 Score=81.15 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=85.4
Q ss_pred hhHhHHHHHHHHH-HhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---c
Q 005981 497 ESKYWNEIIESYV-RALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---I 566 (666)
Q Consensus 497 d~~~w~~~v~~Y~-~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---i 566 (666)
+...+++.+..-. ..+++..+. .|||+|||.|.++.+++.. +. ..+|+.+|. +.+++.+.++ |+ +
T Consensus 20 ~~~~t~~~~r~~~l~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v 94 (198)
T PRK00377 20 EIPMTKEEIRALALSKLRLRKGD--MILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNI 94 (198)
T ss_pred CCCCCHHHHHHHHHHHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCe
Confidence 3346665554221 233444443 5999999999999887653 11 115666664 4566655433 43 2
Q ss_pred cccc-ccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEE
Q 005981 567 GVMH-DWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 567 g~~~-~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
.+.. +..+....++..||+|.+.+ ....+..++.++.|+|||||.+++. -..+.+.++...++.+.++..+.
T Consensus 95 ~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 95 VLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred EEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 2332 22222223346899998752 1235679999999999999999983 34566788888888888765443
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.5e-06 Score=84.98 Aligned_cols=135 Identities=23% Similarity=0.351 Sum_probs=84.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc---cc---cccc-cccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR---GL---IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er---Gl---ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|++..- ...|+.+|. +.+++.+.++ +. +.+. .|+.+.+. +.+||+|.++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~---~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP---DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 3599999999999999988731 125666663 5666666554 22 3333 33422222 379999998532
Q ss_pred cccCC-------C-------------C---CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEeccC
Q 005981 592 FSVES-------K-------------R---CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAE 648 (666)
Q Consensus 592 f~~~~-------~-------------~---c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~~ 648 (666)
+.... . . -.+..++.++.++|+|||++++--.......++.+++...+.......+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d- 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD- 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC-
Confidence 21100 0 0 0134788889999999999999755555667888888777753222111
Q ss_pred CCCCceEEEEEEe
Q 005981 649 GPHASYRILTADK 661 (666)
Q Consensus 649 ~~~~~e~~l~~~k 661 (666)
..+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 235788888765
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=80.71 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEec
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
.++.+|||.|.|+|.++.+|+.. +|+++|+-+.....|+.++... ++.. .+...|+.+.-++ +.||+|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~-~~vDav~-- 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDE-EDVDAVF-- 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEeccccccccc-cccCEEE--
Confidence 45689999999999999999842 8999999998887777665543 4433 3333454444444 4899998
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+ +++..++..+.++|+|||.+++-.+
T Consensus 169 ---LDm-p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 169 ---LDL-PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ---EcC-CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 344 7888999999999999999998854
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-06 Score=86.01 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=66.6
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
..++|||||+|+|.++..++++ +++..|+ |..+..+ .+ .-...+...|.. -+++. +|+++..+++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~-----~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQA-----KE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCH-----HH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcc-----cc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 4578999999999999888865 7888887 3333322 22 222344455554 45554 99999999999
Q ss_pred ccccCh-HHHHHHHHHhccCC--eEEEEEEC
Q 005981 350 NWTRDD-GILLLEVNRMLRAG--GYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~-~~~L~el~RvLkPG--G~lv~st~ 377 (666)
+|.++. ..+|+++++.|+|| |.+++...
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 995433 38999999999999 99999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=84.80 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=67.7
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCCCCChhHHHhc-cccccccccCCCCCCC---CCcc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPFDTY---PRTY 583 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~~~~l~~~~er-Glig~~~~~ce~~~~y---p~ty 583 (666)
++++.+. +|||+|||.|++..+|++. | .|+.+.+.+....+++.++.+| +++.+..|-+++. .| ..++
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G-~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~v 203 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEG-VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMV 203 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCC-EEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCC
Confidence 4466664 5999999999999999987 3 2555444432223466777665 6666666665432 12 2689
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|+|.++-. ..+ ....+++|+.|+|||||+|+|.
T Consensus 204 DvV~~Dva---~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA---QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 99988742 111 2235677999999999999994
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=80.19 Aligned_cols=120 Identities=8% Similarity=-0.025 Sum_probs=74.4
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHh-ccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEee
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYL-LPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAF 327 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L-~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~ 327 (666)
+...+...+.+++.+... ....+|||+|||+|.++..+ ... +|+++|.++..+..++.+ ++..++. ..+...
T Consensus 34 Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~N-l~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKN-LATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHhCCCcEEEEEc
Confidence 456666666666666422 23368999999999999754 332 899999999887766543 3334443 233344
Q ss_pred cccC-CCCCCCCeeEEEecccccccccChHHHHHHHHH--hccCCeEEEEEEC
Q 005981 328 ATRR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (666)
Q Consensus 328 d~e~-Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~R--vLkPGG~lv~st~ 377 (666)
|... ++...++||+|++.--. .. .-...++..+.. +|+|+|.+++...
T Consensus 110 D~~~~l~~~~~~fDlV~~DPPy-~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPPF-RK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hHHHHHhhcCCCceEEEECCCC-CC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 4332 32234579999976542 11 112345555544 4799999988853
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.1e-06 Score=88.02 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCC-CCCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY-PSQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf-~d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..++.. +|+|+|+++.++..++. .++..++. ..+...|+..+.. ..+.||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~-n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr-- 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQ-SAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR-- 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC--
Confidence 478999999999999999876 89999999999988764 45555654 3445555554432 23579999976331
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
......+.++...++|++.++++..
T Consensus 251 --~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 251 --RGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred --CCccHHHHHHHHHcCCCeEEEEECC
Confidence 1122333344455788999988864
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.3e-06 Score=88.45 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=67.2
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHH--HHH-Hc----CCCceEEeecccC-CCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FAL-ER----GAPAMVAAFATRR-LPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~--~a~-~r----g~~~~~~~~d~e~-Lpf~d~sFD 340 (666)
..+++||+||||+|..++.+.+. +|+++|+++.++..|+.. +.. .+ .....+...|... +.-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45679999999999888877764 799999999888766531 110 01 1122333334222 333457899
Q ss_pred EEEeccccccccc---C--hHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTR---D--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~---d--~~~~L~el~RvLkPGG~lv~st 376 (666)
+|++... ..... . ...+++.+.+.|+|||.+++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9996532 22110 0 1368899999999999998874
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-06 Score=84.72 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcC---CC---------ceEEeecccCCCCCC-C
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG---AP---------AMVAAFATRRLPYPS-Q 337 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg---~~---------~~~~~~d~e~Lpf~d-~ 337 (666)
....+||+.|||.|.-...|+++ +|+|+|+|+..+..+..+...... .. ..+...|.-.++-.. +
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 34468999999999999999988 999999999877554322211000 11 123344555554332 5
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 005981 338 AFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 338 sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~s 375 (666)
+||+|+=..+++-+.++. ..+.+.+.++|+|||.+++.
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 799999766666554444 48999999999999995444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.7e-06 Score=89.67 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=75.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCC----hhHHHhccc--cccccccCCC-CCCCC-CccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNT----LPVIYDRGL--IGVMHDWCEP-FDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~----l~~~~erGl--ig~~~~~ce~-~~~yp-~tyDliha~~~ 591 (666)
.+||+|||.|.|..+|+.+.-+ .|++.+|- ..+ +.-+.++|+ +-+++.-.+. +..+| .++|.|++.
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~---~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln-- 199 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPN---KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH-- 199 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCC---CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--
Confidence 5999999999999999987201 15666663 333 344455676 4444333222 22344 899999976
Q ss_pred ccc-CC----CCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhc-CcEEE
Q 005981 592 FSV-ES----KRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAM-GWHVT 642 (666)
Q Consensus 592 f~~-~~----~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l-~W~~~ 642 (666)
|.. +. .|=..+..|.|+.|+|+|||.+.|+ |..+..+.+.+.+... +++..
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~ 257 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIE 257 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceee
Confidence 332 11 1112368999999999999999994 8777766666655544 55543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=86.27 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=67.5
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccCC----CCCCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL----PYPSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~L----pf~d~sFDlVv~ 344 (666)
+.+|||+|||+|.++...+.. +|+++|+++.++..++.+ +...++. ..+...|+... ....++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N-~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 478999999999988664432 899999999999887654 4445543 23444443322 112468999998
Q ss_pred cccccccc--------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWT--------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~--------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.--...-. .+...++..+.++|+|||.++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 64422111 1123455667899999999988653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.16 E-value=3e-06 Score=86.06 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=74.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhH-HHhcccccc--------------ccccCCCCCCCC----
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV-IYDRGLIGV--------------MHDWCEPFDTYP---- 580 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~-~~erGlig~--------------~~~~ce~~~~yp---- 580 (666)
..|||+|||.|-.|.+|+++|++|+.+-++|. .++. +.++|+-.. +.-.|-.+..++
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~----Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI----AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH----HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 36999999999999999999995555555443 3333 233444110 011222222222
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE---e-Chh--------HHHHHHHHHHhcCcEEEEEec
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---D-SID--------VMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~---d-~~~--------~~~~~~~i~~~l~W~~~~~~~ 646 (666)
.+||+|....+|.+.. ....+.++..|.|+|||||++++- . ... ..++|.+++. -+|++...+.
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 4799999887777664 334468999999999999975442 1 111 1345555554 2688766543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=91.66 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=68.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHH--HHHHc--C---CCceEEeecccC-CCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FALER--G---APAMVAAFATRR-LPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~--~a~~r--g---~~~~~~~~d~e~-Lpf~d~sFD 340 (666)
+++++|||||||+|..+..+.++ +|+++|+++.+++.++.. +..-. . ....+...|..+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35679999999999999887754 799999999988766541 11111 1 112233334332 222347899
Q ss_pred EEEecccccccccCh-----HHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~-----~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|++... .+..+.. ..+++.+.+.|||||.+++...
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9997633 3332211 3688999999999999998753
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-06 Score=84.84 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=75.4
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH-HHhcccccc--------------ccccCCCCCCC---C-
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV-IYDRGLIGV--------------MHDWCEPFDTY---P- 580 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~-~~erGlig~--------------~~~~ce~~~~y---p- 580 (666)
.|||.|||.|--|.+|+++|+ +|+.+|- +..++. +.++|+-.. .+-++..+..+ +
T Consensus 40 rvL~~gCG~G~da~~LA~~G~-----~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH-----EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC-----eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 699999999999999999999 5666662 344443 346666211 11122223222 2
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE-E-----eCh------hHHHHHHHHHHhcCcEEEEEe
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI-R-----DSI------DVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii-~-----d~~------~~~~~~~~i~~~l~W~~~~~~ 645 (666)
.+||+|....+|.+.. ...-..++..|.++|||||++++ + +.. -..++|.+++.. +|++....
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 5899999888877764 23346899999999999996444 2 111 124555555542 28876554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-06 Score=86.41 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=67.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-CCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++..|++.+.. ++.+|. +.++..+.++ |+ +...+...+.++. .+.+||+|++.++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 46999999999999999888753 445553 4555555443 33 2223333222222 2479999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.+.. +...+|.++.++|+|||.+++++
T Consensus 122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVP---DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 87765 44789999999999999999975
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.5e-06 Score=82.48 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-------ccccc
Q 005981 499 KYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-------IGVMH 570 (666)
Q Consensus 499 ~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-------ig~~~ 570 (666)
..|.+.+-.|... +. .+-..|||+|||.|.++.+|++.+. .|+.+| ++.++..+.++.- +...+
T Consensus 39 ~~~~~~~~~~l~~-~~--~~~~~vLDiGcG~G~~~~~la~~~~-----~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~ 110 (219)
T TIGR02021 39 AAMRRKLLDWLPK-DP--LKGKRVLDAGCGTGLLSIELAKRGA-----IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV 110 (219)
T ss_pred HHHHHHHHHHHhc-CC--CCCCEEEEEeCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 3444445444432 11 2335799999999999999998865 466676 3678888777632 23333
Q ss_pred ccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh------------------------H
Q 005981 571 DWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------------------V 626 (666)
Q Consensus 571 ~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~------------------------~ 626 (666)
.-. ...+.+||+|-+..++.+... .++..++.++.|++++++++.+..... .
T Consensus 111 ~d~---~~~~~~fD~ii~~~~l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
T TIGR02021 111 NDL---LSLCGEFDIVVCMDVLIHYPA-SDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHP 186 (219)
T ss_pred CCh---hhCCCCcCEEEEhhHHHhCCH-HHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEec
Confidence 332 233489999999888876543 356789999999999998888753221 1
Q ss_pred HHHHHHHHHhcCcEEEEE
Q 005981 627 MDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 627 ~~~~~~i~~~l~W~~~~~ 644 (666)
.+.++++++...|++...
T Consensus 187 ~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 187 MTDLERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHHHHHcCceeeee
Confidence 345666777777776544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.8e-06 Score=83.44 Aligned_cols=118 Identities=25% Similarity=0.386 Sum_probs=78.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp-~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|++..-. .+|+.+|. +.+++.+.+ .|+ +.+.+.-+ +..++ .+||+|.|+--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD---ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPGGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcCCceeEEEECCC
Confidence 36999999999999999986111 15566663 455555543 344 33443332 22343 78999998644
Q ss_pred cccCC------CCC-----------------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEE
Q 005981 592 FSVES------KRC-----------------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 592 f~~~~------~~c-----------------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~ 642 (666)
|.... ..+ .+..++.++.|+|+|||++++.........++++++..+|+..
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 33211 000 0236788999999999999998776677888899888888643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.4e-06 Score=87.51 Aligned_cols=127 Identities=22% Similarity=0.296 Sum_probs=79.6
Q ss_pred eEeeccccchHHHHHHhhCCCc-eEEEEeeccCCCCChhHHHhccc---cccccccCCCCCCCCCccceEEeccccccCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~-vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
.|||+|||+|-.|-+-++.|+. |...-+-|..-.++.+-+...|+ +.+ + ..+.... ..||+|-|+=+...
T Consensus 164 ~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~~--~~~dlvvANI~~~v-- 237 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLVE--GKFDLVVANILADV-- 237 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTCC--S-EEEEEEES-HHH--
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-Eeccccc--ccCCEEEECCCHHH--
Confidence 7999999999988888888763 33333333222334444444566 222 1 2222222 89999999832221
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
+..++-++.+.|+|||++|++-=. +..+.|.+.++. .|++.....++ ....|+++|+
T Consensus 238 ----L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~----~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ----LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG----EWVALVFKKK 295 (295)
T ss_dssp ----HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET----TEEEEEEEE-
T ss_pred ----HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC----CEEEEEEEeC
Confidence 235666788999999999999533 345677777777 89887666544 4788888885
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.7e-06 Score=83.48 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCeEEEECCCCchhHHHhcc-------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
..+|||+|||+|.++..++. .+|+++|+++.++..++... ....+...|+...++ +++||+|+++--
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECCC
Confidence 36899999999998886653 27999999998776665322 123344455555444 468999998765
Q ss_pred ccccc-cC----------hHHHHHHHHHhccCCeE
Q 005981 348 RINWT-RD----------DGILLLEVNRMLRAGGY 371 (666)
Q Consensus 348 l~h~~-~d----------~~~~L~el~RvLkPGG~ 371 (666)
+.... .+ ...++..+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 44221 11 12578888887787776
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.8e-06 Score=82.51 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=72.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
.|||+|||.|.++..|++.+. -+|+.+|. +.++..+.+ .|+ +-+. .|+.+.+. +..||+|.++--|.
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~----~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~ 112 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGA----GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYV 112 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCC
Confidence 599999999999999988754 14555553 455655444 344 3233 34433221 27999999974332
Q ss_pred cCCC------------------CCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEE
Q 005981 594 VESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 594 ~~~~------------------~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~ 643 (666)
.... .+.++.++.++.|+|||||.+++-.. ......+.+++++-.|++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 1110 11246788899999999999998422 22344555555665665544
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.7e-06 Score=83.73 Aligned_cols=100 Identities=22% Similarity=0.159 Sum_probs=62.3
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--ccccc-ccCCCCCCC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMH-DWCEPFDTY 579 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~-~~ce~~~~y 579 (666)
..+.+.+..+. .|||+|||+|.+++.|++..-. .-.|+.+|. +.+++.+.+ .|+ +.+.+ |..+....
T Consensus 69 ~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~--~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~- 143 (215)
T TIGR00080 69 MTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGR--DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP- 143 (215)
T ss_pred HHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-
Confidence 34445555553 5999999999999999887211 002555553 455555543 354 33443 32222211
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
...||+|++... ...+..++-+.|+|||++|+.
T Consensus 144 ~~~fD~Ii~~~~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAA---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCC---------cccccHHHHHhcCcCcEEEEE
Confidence 268999998732 235566788999999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.6e-06 Score=82.92 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhc--c----cCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccc------c
Q 005981 501 WNEIIESYVRAL--H----WKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL------I 566 (666)
Q Consensus 501 w~~~v~~Y~~~l--~----~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGl------i 566 (666)
.++.+++|++.+ + +....--.||.+|||+|..--++-.. ++ .|+-+| +++|-+++..+-- +
T Consensus 53 yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~-----svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 53 YNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPIN-----SVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCc-----eEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 346666676532 1 11111224799999999876666544 54 455556 3677766654322 3
Q ss_pred c-cccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----H-HHHHHHHHHh
Q 005981 567 G-VMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----V-MDELQEIGKA 636 (666)
Q Consensus 567 g-~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----~-~~~~~~i~~~ 636 (666)
. ..|.--|.++..+ .+||.|.|.-++..-. +...+|.|+.|+|||||.+|+-+... . ..-++..+++
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve---~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVE---DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccC---CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 3 6677888888666 9999999886654333 33699999999999999999965432 2 3334445555
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=81.50 Aligned_cols=97 Identities=10% Similarity=0.092 Sum_probs=65.4
Q ss_pred CCeEEEECCCCchhHHHhcc----C-CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC-CC-----CCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLP----R-NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LP-----YPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~----~-~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~-Lp-----f~d~sFDl 341 (666)
.++|||+|||+|..+..++. . +|+++|+++..+..++..++ +.++.. .+...++.+ ++ .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~-~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK-KAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 47999999999975554442 2 89999999988877765444 445432 233333322 22 12468999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|++..- .+....++.++.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 985321 1233578899999999999998763
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=95.37 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC-CCCCCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~-Lpf~d~sFDlVv~s~~ 347 (666)
+++|||+|||+|.++..++.. +|+++|+|+.++..++.+.. ..++. ..+...|+.+ +.-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 378999999999999988865 69999999999988875544 44543 2344444322 1111468999998533
Q ss_pred cccc----------ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINW----------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~----------~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+.- ..+...++..+.++|+|||.+++++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2211 12234678888999999999988863
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-06 Score=82.20 Aligned_cols=102 Identities=24% Similarity=0.408 Sum_probs=61.2
Q ss_pred CCCeEEEECCCCc----hhHHHhcc------C---CeEEEeCCcchHHHHHHHH------------HHHc------C-C-
Q 005981 274 HIRVVMDAGCGVA----SFGAYLLP------R---NVITMSIAPKDVHENQIQF------------ALER------G-A- 320 (666)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~------~---~V~gvDiS~~~l~~a~~~~------------a~~r------g-~- 320 (666)
..-+|+..||++| +++..|.+ . +|+|+|+++..+..|+.-. ..++ + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 55555544 1 8999999999887775310 0011 0 0
Q ss_pred --------CceEEeecccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 005981 321 --------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 321 --------~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~s 375 (666)
...+...+..+.+...+.||+|+|-++++.+..+. ..++..+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01222333333223457899999999999885443 38999999999999999987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=86.02 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccccccccccCCCCCCCCCccceEEeccccccC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGlig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
.|||+|||+|.++.+|+++.-. ..|+.+|. ..++..+.+ .|+-+.++ +...+...+..||+|.|+-.|...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~---~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK---IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 4999999999999999987311 13555553 355544432 34422111 122233345899999999777543
Q ss_pred CC--CCCHHHHHHHhhhcccCCeEEEEEeC--hhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 596 SK--RCNMSTIMLEMDRMLRPGGHVYIRDS--IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 596 ~~--~c~~~~~l~E~dRiLRPgG~~ii~d~--~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.. ....+.++.++.|.|||||.++|--+ ...-..+++..... ++...+ .+.||+-++|.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la~~------~~f~v~~a~~~ 337 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLAQT------GRFKVYRAIMT 337 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEEeC------CCEEEEEEEcc
Confidence 21 12346899999999999999988643 22344455544332 333322 25788888773
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=81.08 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHh----ccc---cccccccCC-C
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCE-P 575 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce-~ 575 (666)
..+.+.+..+ ..|||+|||+|.+++.|++. +. .|+.+|. +.++..+.+ .|+ +.+.+.-.+ .
T Consensus 64 ~~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g-----~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 64 MCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRG-----KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 3444555444 35999999999999888764 12 3555553 345544433 354 344443322 2
Q ss_pred CCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 576 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 576 ~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++ -..+||+|++...+. .+..|+-|+|+|||.+++..
T Consensus 137 ~~-~~~~fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LE-KHAPFDAIIVTAAAS---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred Cc-cCCCccEEEEccCcc---------hhhHHHHHhcCcCcEEEEEE
Confidence 22 137999999985432 34457889999999999963
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.3e-05 Score=81.85 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=85.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc---cc-cccccCCCCCCCC--CccceEEecc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IG-VMHDWCEPFDTYP--RTYDLLHAAG 590 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl---ig-~~~~~ce~~~~yp--~tyDliha~~ 590 (666)
+-++|||+|||.|-+|-|.++.|+. -|+.+|. +..++++.|.-. +. ..+.-+=.....+ +.||+|-|+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~----~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK----KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc----eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 4578999999999999999999872 3666664 566666666422 11 1111111122234 5999999981
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+-. -+..+.-++.|.|||||++|++-=. +..+.+.+.+.+-.|++..+...+ ...-++.+|
T Consensus 238 -LA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~----eW~~i~~kr 299 (300)
T COG2264 238 -LAE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLERE----EWVAIVGKR 299 (300)
T ss_pred -hHH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecC----CEEEEEEEc
Confidence 110 1235666778999999999999643 346778888888899987766543 244555554
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.6e-05 Score=67.55 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=67.6
Q ss_pred EEEECCCCch--hHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC--CCCCC-CCeeEEEeccccc
Q 005981 278 VMDAGCGVAS--FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR--LPYPS-QAFDLIHCSRCRI 349 (666)
Q Consensus 278 VLDIGCGtG~--~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~--Lpf~d-~sFDlVv~s~~l~ 349 (666)
+||+|||+|. +...+... .++++|+++.++..+...... .+.. ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 9999999998 44444442 688899999877663322222 2222 2233334343 77776 489999 666666
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6644 78999999999999999999864
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=88.27 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC----CCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~----Lpf~d~sFDlVv~s~ 346 (666)
...+|||+|||+|.++..+++. +|+|+|+++.++..++.+ +...++.. .+...|+.. +++.+++||+|++.-
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n-~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQN-AELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHH-HHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 3468999999999999999875 899999999999877754 44445533 344445432 234456899999653
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.... -...++..+.+ |+|++.++++.
T Consensus 371 Pr~G---~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 371 PRKG---CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCCC---CCHHHHHHHHh-cCCCEEEEEcC
Confidence 3111 12455665554 89999888874
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-05 Score=82.33 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=88.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccc-cccCCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~tyDliha~~ 590 (666)
..|||+|||.|.++.+|++..-+ .+|+.+|. +.++.++.++ |+ +-++ .|+++.+. ...||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~---~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN---AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECC
Confidence 36999999999999999986211 25666663 5667666653 43 3334 56655442 14899999851
Q ss_pred -------------ccccCCCCC---------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHH-hcCcE-EEEEec
Q 005981 591 -------------LFSVESKRC---------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK-AMGWH-VTLRET 646 (666)
Q Consensus 591 -------------~f~~~~~~c---------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~-~l~W~-~~~~~~ 646 (666)
++.+....+ .+..++.++.++|+|||++++--.......+++++. ...|. +..+..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 111111111 245789999999999999999876667777888776 46775 333322
Q ss_pred cCCCCCceEEEEEEeC
Q 005981 647 AEGPHASYRILTADKR 662 (666)
Q Consensus 647 ~~~~~~~e~~l~~~k~ 662 (666)
-.+.++++++++.
T Consensus 271 ---~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 ---LNGKERVVLGFYH 283 (284)
T ss_pred ---CCCCceEEEEEec
Confidence 2356888888753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=82.64 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHH--cCCCceEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE--RGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~--rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
...+|||+|||+|.|+..+++. +|+|+|+++.|++....+.++. .+..+.. ..+.+.++..-..+|+++++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCceeeeEEEeehH-
Confidence 4578999999999999999876 7999999998776532221110 0111111 1111222222246787775533
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..|..+.+.|++ |.+++--
T Consensus 153 --------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 --------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred --------hHHHHHHHHhCc-CeEEEEc
Confidence 247889999999 8776653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.02 E-value=6e-06 Score=82.12 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=61.7
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCC-CccceEEeccccccCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 597 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~ 597 (666)
+|||+|||.|.+..+|++. ++ +++.+| ++.++..+.++|+--+..+..+.+..++ ++||+|.|.++|.+..+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~-----~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV-----RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC-----cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 5999999999999999865 33 344555 3567778877775212223222233354 89999999999888765
Q ss_pred CCCHHHHHHHhhhcccCC
Q 005981 598 RCNMSTIMLEMDRMLRPG 615 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPg 615 (666)
...+|.||.|+++++
T Consensus 91 ---~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 ---PEEILDEMLRVGRHA 105 (194)
T ss_pred ---HHHHHHHHHHhCCeE
Confidence 478899998887754
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.5e-06 Score=86.85 Aligned_cols=100 Identities=14% Similarity=0.287 Sum_probs=66.2
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHH----Hhccc---cccccccCCCCCCCCCccceEEecc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI----YDRGL---IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~----~erGl---ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
..+.|||+|||.|.++.+++++.=+ .+++.+|.+.+++.+ .+.|+ |.+.+..... ..+|. +|+|.+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~---~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE---LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-ESYPE-ADAVLFCR 223 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC---CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC-CCCCC-CCEEEeEh
Confidence 4568999999999999999887201 134444544555544 34465 4444333211 13454 79998887
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
++.++.+. ....+|.++.|.|||||.++|-|.
T Consensus 224 ~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77655432 235799999999999999999753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=81.80 Aligned_cols=101 Identities=18% Similarity=0.367 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHH----HcCCC------------------------
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL----ERGAP------------------------ 321 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~----~rg~~------------------------ 321 (666)
.+..+|||||-.|.++..+++. .|+|+||++..++.|..+.-. +....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3568999999999998888765 899999999888777543211 00000
Q ss_pred -------------ceEEeecccCCCCCCCCeeEEEecccc----cccccC-hHHHHHHHHHhccCCeEEEEE
Q 005981 322 -------------AMVAAFATRRLPYPSQAFDLIHCSRCR----INWTRD-DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 322 -------------~~~~~~d~e~Lpf~d~sFDlVv~s~~l----~h~~~d-~~~~L~el~RvLkPGG~lv~s 375 (666)
+.+.. ..+-|.+....||+|.|.... +.|.++ +..+++.+.++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle-~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLE-SDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEe-cchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 001122345689999985432 233222 348999999999999999886
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.1e-05 Score=78.90 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=99.0
Q ss_pred CCCCCCcCCCCccccccCCCCCccccccccc-CcchhccccccccCCCCccccccHHHH----HHHHHhhcccccCCCCC
Q 005981 201 GYKTPIPWPRSRNEVWYNNVPHSRLVEDKGG-QNWISKEKDKFKFPGGGTQFIHGADQY----LDQIAKMVPDITWGHHI 275 (666)
Q Consensus 201 ~Y~~P~~wP~s~~~~W~~n~~~~~L~~~k~~-q~W~~~~g~~~~Fpgggt~F~~g~~~~----i~~L~~~L~~i~~g~~~ 275 (666)
+++..|..-.+.|++ |.|.|.....-.+-. ++|...-| | .|.++. .+.|.+.+..+...+..
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr~yLnaiG--W----------rGIR~Rk~~l~~~i~~ai~~L~~~g~p 136 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDRNYLNAIG--W----------RGIRQRKVHLEELIRQAIARLREQGRP 136 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHHHHHhhhcccc--h----------HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 667777778888998 667665433221111 11111111 0 122221 22222222222223456
Q ss_pred CeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHHHcCCCce--EEeecc---cCCCCCCCCeeEEEe
Q 005981 276 RVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAM--VAAFAT---RRLPYPSQAFDLIHC 344 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~~rg~~~~--~~~~d~---e~Lpf~d~sFDlVv~ 344 (666)
-+||||.||.|......... +|.-.|+++..+...+ +.++++|+... +...|+ +.+.--+-..++++.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 78999999999654433322 7888999998887776 56778887653 333332 222212345799998
Q ss_pred cccccccccCh---HHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 345 SRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 345 s~~l~h~~~d~---~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
+....-+ +|- ...|..+.++|.|||+++.+..|-...
T Consensus 216 sGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 216 SGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred ecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 8765555 552 367899999999999999997654333
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=78.24 Aligned_cols=118 Identities=23% Similarity=0.349 Sum_probs=71.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccc-cccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||+|-.+.+|++++.+. .|+.+|. +..++.+.+ .++ +.++ +|+.+.+. +..||+|-|+-=
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~---~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDA---KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCE---EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CeEEEecCChHHHHHHHHHhCCCC---EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 359999999999999999985431 2444452 455554433 333 3333 56655444 499999999854
Q ss_pred cccCCC--CCCHHHHHHHhhhcccCCeEEEE--EeChhHHHHHHHHHHhcCcEEEEEec
Q 005981 592 FSVESK--RCNMSTIMLEMDRMLRPGGHVYI--RDSIDVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 592 f~~~~~--~c~~~~~l~E~dRiLRPgG~~ii--~d~~~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
|....+ ...+..++.+.-++|+|||.+++ +........++++.. ++.+...
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~----~~~~~~~ 162 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG----DVEVVAK 162 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS------EEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC----CEEEEEE
Confidence 433221 12356889999999999998855 444444444555444 5554443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.9e-06 Score=86.11 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CeEEEECCCCc----hhHHHhcc-------C-CeEEEeCCcchHHHHHHHHH---HHcCCC-------------------
Q 005981 276 RVVMDAGCGVA----SFGAYLLP-------R-NVITMSIAPKDVHENQIQFA---LERGAP------------------- 321 (666)
Q Consensus 276 ~~VLDIGCGtG----~~a~~L~~-------~-~V~gvDiS~~~l~~a~~~~a---~~rg~~------------------- 321 (666)
-+|+..||.|| +++..|.+ . +|+|+|++...+..|+.-.- .-++++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 45554433 1 79999999999887764210 000100
Q ss_pred ---------ceEEeecccCCCCC-CCCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEE
Q 005981 322 ---------AMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 322 ---------~~~~~~d~e~Lpf~-d~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~s 375 (666)
..+...+....+++ .+.||+|+|-++++|+..+ ...++.++.+.|+|||+|++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01222233332332 5789999999998888543 348999999999999999877
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=81.32 Aligned_cols=154 Identities=20% Similarity=0.297 Sum_probs=98.4
Q ss_pred hhhhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHh----ccc---c
Q 005981 495 KAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---I 566 (666)
Q Consensus 495 ~~d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~e----rGl---i 566 (666)
+.|++.+.+.+. ..+..... +|||||||+|-.|.+|+....+ .+|+.+| ++..+.+|.+ .|+ +
T Consensus 93 r~dTe~Lve~~l---~~~~~~~~---~ilDlGTGSG~iai~la~~~~~---~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 93 RPDTELLVEAAL---ALLLQLDK---RILDLGTGSGAIAIALAKEGPD---AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred CCchHHHHHHHH---HhhhhcCC---cEEEecCChHHHHHHHHhhCcC---CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 456666666554 22222211 7999999999999999998532 4677777 4566655533 354 2
Q ss_pred ccccccCCCCCCCCCccceEEecccccc-------------------CCCCC---CHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 567 GVMHDWCEPFDTYPRTYDLLHAAGLFSV-------------------ESKRC---NMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 567 g~~~~~ce~~~~yp~tyDliha~~~f~~-------------------~~~~c---~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
-+..+| |...+.+||+|-|+==+-- ..... -+..++.+..++|+|||++++.-..
T Consensus 164 ~~~~dl---f~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 164 VVQSDL---FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred EEeeec---ccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 233466 5555569999987521110 00111 1348889999999999999999888
Q ss_pred hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 625 DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 625 ~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
...+.+++++....+ .........-.+.+++.++++
T Consensus 241 ~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 889999999999995 221112222335677777665
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.2e-06 Score=85.42 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=74.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc------------cccccccCCCCCCCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL------------IGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl------------ig~~~~~ce~~~~yp~tyDli 586 (666)
++|||+|||.|-...-|+..|+ +|+.+|. ..++++|.+.-- +...|.--|.+- ..||.|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-----~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-----QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-----eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 5699999999999999999998 8888985 688888877511 223344444444 359999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.|+.++.|..+. ..++.-+-+.|||||.++|++-
T Consensus 163 vcsevleHV~dp---~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 163 VCSEVLEHVKDP---QEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eeHHHHHHHhCH---HHHHHHHHHHhCCCCceEeeeh
Confidence 999999987764 6899999999999999999843
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.6e-06 Score=83.23 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=76.6
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcccc-------ccccccCCCCCCCCCccceEEecc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLI-------GVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGli-------g~~~~~ce~~~~yp~tyDliha~~ 590 (666)
-|.++|+|||.|--+..+++.-. +|+.+| ++.||+++.+.=-+ .+--+--+.+..=+++.|||-|.-
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k-----~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK-----EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh-----hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 45799999999944444455533 889998 47999988654332 222222233333379999999884
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCe-EEEE---EeChhHHHHHHHHHHhcCcE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGG-HVYI---RDSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG-~~ii---~d~~~~~~~~~~i~~~l~W~ 640 (666)
.|. -|+++..+.++.||||+.| .+.+ +|+.-..-+...+..+++|+
T Consensus 109 a~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 AVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 443 5899999999999999988 3322 45554556666666677765
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.4e-05 Score=77.81 Aligned_cols=132 Identities=15% Similarity=0.240 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEee---
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF--- 327 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~--- 327 (666)
.+...+.+.+.+....+ .....+||+|||+|..+..++.. .|+++|.|+..+.-|. +.++..++...+.+.
T Consensus 130 TEE~V~~Vid~~~~~~~-~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~ 207 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEH-SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNI 207 (328)
T ss_pred HHHHHHHHHHHHhhhhh-cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecc
Confidence 34556666666654322 23357999999999887777654 8999999998876654 344444333322211
Q ss_pred ---c-ccCCCCCCCCeeEEEecccccccccCh--------------------------HHHHHHHHHhccCCeEEEEEEC
Q 005981 328 ---A-TRRLPYPSQAFDLIHCSRCRINWTRDD--------------------------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 328 ---d-~e~Lpf~d~sFDlVv~s~~l~h~~~d~--------------------------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ ....+...+.+|+++|+--.+.- +|. ..++.-+.|.|+|||.+.+...
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPYI~~-dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPYIRK-DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccccccCceeEEecCCCcccc-cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 33444567899999987543322 110 1344556799999999999853
Q ss_pred CCCCCHHHHHHHH
Q 005981 378 PVYKHEEAQEEHW 390 (666)
Q Consensus 378 P~~~~~~el~~~w 390 (666)
.......+...|
T Consensus 287 -~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 287 -ERKEHSYLVRIW 298 (328)
T ss_pred -ccccCcHHHHHH
Confidence 223334455555
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.2e-05 Score=74.72 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=68.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
-.|-|||||-+..|+++.+ ++.|.-..+++... . |........|.-+.+.|++-+.- |.. ..
T Consensus 74 ~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~----------~---Vtacdia~vPL~~~svDv~VfcL--SLM--GT 135 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNP----------R---VTACDIANVPLEDESVDVAVFCL--SLM--GT 135 (219)
T ss_dssp S-EEEES-TT-HHHHH--S----EEEEESS-SST----------T---EEES-TTS-S--TT-EEEEEEES-------SS
T ss_pred EEEEECCCchHHHHHhccc-CceEEEeeccCCCC----------C---EEEecCccCcCCCCceeEEEEEh--hhh--CC
Confidence 3599999999999988753 33344444444321 1 11111112232238999887652 222 24
Q ss_pred CHHHHHHHhhhcccCCeEEEEEeChhH---HHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPGGHVYIRDSIDV---MDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii~d~~~~---~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
++.+.|.|..|||||||.++|.+-... .+...+.+++++.+....|..+. --.++..+|
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~---~F~~f~F~K 197 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNK---HFVLFEFKK 197 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--ST---TEEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCC---eEEEEEEEE
Confidence 678999999999999999999876554 45555678999999998876543 334444444
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4e-05 Score=84.72 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=88.0
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc-cccc-cccCCCCCCCCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
+|||+|||+|.++.+|+.. +. +|+.+|. +.+++.+.++ |+ +.+. .|+.+....-...||+|.|+-=
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a-----~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDA-----FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 6999999999999998864 33 5666663 5777766553 43 3344 3443331111257999999542
Q ss_pred cccCC---------------------CCC-CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEeccCC
Q 005981 592 FSVES---------------------KRC-NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEG 649 (666)
Q Consensus 592 f~~~~---------------------~~c-~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~~~ 649 (666)
+.... +.. -+..++.+..+.|+|||++++--..+..+.++++++...|+......+
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD-- 406 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD-- 406 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--
Confidence 21100 000 133777788899999999999766677889999999888865332222
Q ss_pred CCCceEEEEEEeC
Q 005981 650 PHASYRILTADKR 662 (666)
Q Consensus 650 ~~~~e~~l~~~k~ 662 (666)
-.+.++++++++.
T Consensus 407 l~G~dR~v~~~~~ 419 (423)
T PRK14966 407 LAGLDRVTLGKYM 419 (423)
T ss_pred CCCCcEEEEEEEh
Confidence 2346899988763
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=7e-06 Score=81.38 Aligned_cols=113 Identities=19% Similarity=0.355 Sum_probs=85.3
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCC-CccceEEeccccccCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 597 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~ 597 (666)
.|||+|||.|.+-++|.+. ++ .+..++- +..+..+.+||+-=+.+|.-+.+..|| .+||.|-.+..+.+..+
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v-----~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQV-----DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCC-----eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 4999999999999999985 55 3334442 466888899999635567766788898 99999999877776654
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEE------------------------------eChh----HHHHHHHHHHhcCcEEEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIR------------------------------DSID----VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~------------------------------d~~~----~~~~~~~i~~~l~W~~~~ 643 (666)
. +.+|.||=|| |...|++ |+.. .+...+.+.+.+..++.-
T Consensus 91 P---~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~ 164 (193)
T PF07021_consen 91 P---DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEE 164 (193)
T ss_pred H---HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEE
Confidence 3 6899999665 7788886 3333 267788888888888754
Q ss_pred E
Q 005981 644 R 644 (666)
Q Consensus 644 ~ 644 (666)
.
T Consensus 165 ~ 165 (193)
T PF07021_consen 165 R 165 (193)
T ss_pred E
Confidence 4
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-05 Score=81.75 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=72.0
Q ss_pred cCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEecc
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~ 590 (666)
..+.+++.|+|+|+|.|.++++++++ ++.+.+ .|.+..++.+.+..-|... +|. |.++|. +|++...+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v-----~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~ 166 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATV-----FDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRH 166 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEE-----EE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEES
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCccee-----eccHhhhhccccccccccccccH---Hhhhcc-ccceeeeh
Confidence 45667889999999999999999887 443333 3444445555444344444 666 566778 99999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCC--eEEEEEeC
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPG--GHVYIRDS 623 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPg--G~~ii~d~ 623 (666)
++..+.+. ....||..+.+.|+|| |.++|-|.
T Consensus 167 vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 167 VLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 99988753 3469999999999999 99999754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.4e-05 Score=74.88 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=71.6
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTY 579 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~y 579 (666)
..+.+..+. .|||+|||+|.++..+++. +. .|+.+|. +.++..+.+ .|+ +.+.+.-++. +...
T Consensus 34 ~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~-----~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 34 SQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKG-----RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCC-----EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 444544443 5999999999999888754 23 4555663 456655543 344 3444333322 2222
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCc
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGW 639 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W 639 (666)
...+|.++..+ ...++.++.++.|+|+|||++++... .+.+..+.+.++.+.+
T Consensus 107 ~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 107 APAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred CCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 23456665531 23568999999999999999999753 3445556666666543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.6e-05 Score=80.12 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=82.4
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cccccc-cccCCCCCC-CCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVM-HDWCEPFDT-YPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~-~~~ce~~~~-yp~tyDliha~~ 590 (666)
.+|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ |+ .++ .|+.+.+.. +...||+|-++=
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~-----~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI-----ELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECC
Confidence 36999999999999998865 33 4555663 4566555443 32 233 344333321 235799999874
Q ss_pred ccccCC-------------CCC----------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEecc
Q 005981 591 LFSVES-------------KRC----------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA 647 (666)
Q Consensus 591 ~f~~~~-------------~~c----------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~ 647 (666)
=+.... .++ -+..++..+.++|+|||++++--..+....+..+++..+|+..+..++
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcc
Confidence 322100 000 034788888899999999999766667788999999889988888776
Q ss_pred CC
Q 005981 648 EG 649 (666)
Q Consensus 648 ~~ 649 (666)
+-
T Consensus 242 ~~ 243 (251)
T TIGR03704 242 EL 243 (251)
T ss_pred cc
Confidence 53
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.3e-05 Score=68.10 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=63.0
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHH---hccc---cccccccCCCCCC-CCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIY---DRGL---IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~---erGl---ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
+|+|+|||.|++...+++. +. .+..+|. ++.+..+. +.+. +-+++...+.... -+..||+|.+...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGA-----RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 4899999999999999883 33 4444543 33333333 1121 4444444333332 3478999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+... .-....++..+.+.|||||++++.
T Consensus 76 ~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7762 123468999999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.8e-05 Score=80.16 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=62.0
Q ss_pred cHHHHHHHHHhhcccc----cCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceE-
Q 005981 254 GADQYLDQIAKMVPDI----TWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV- 324 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i----~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~- 324 (666)
+...|+..+.+++... ...+...+|||||||+|.+...|+.+ +++|+|+++..+..|+...+...++...+
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 4556787777776431 11234578999999999766665543 89999999999988886555431443322
Q ss_pred -E-eecccCC----CCCCCCeeEEEeccccccc
Q 005981 325 -A-AFATRRL----PYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 325 -~-~~d~e~L----pf~d~sFDlVv~s~~l~h~ 351 (666)
. ..+...+ ..+.+.||+|+|+--++.-
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 1 1121111 1245789999998764443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.8e-05 Score=84.42 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC-CCCCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp-f~d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..++.. .|+|+|+++.++..++. .++..++. ..+...+++.+. -..++||+|++.--.-.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 368999999999999988866 89999999999877764 44445553 334444544322 11246999997644211
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
-...++..+. .++|++.++++..
T Consensus 313 ---~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 313 ---IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 1234555554 4799999999964
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.9e-05 Score=79.95 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=65.8
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc---cccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|++.+. .|+.+| ++++++.+.++ |+ +...+.. +...+.+||+|.+..+
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 5799999999999999999876 356666 35777777664 22 2222222 3333489999999998
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.+..+ ..+..++.++.|++++++.+.+.
T Consensus 137 l~~~~~-~~~~~~l~~l~~~~~~~~~i~~~ 165 (230)
T PRK07580 137 LIHYPQ-EDAARMLAHLASLTRGSLIFTFA 165 (230)
T ss_pred hhcCCH-HHHHHHHHHHHhhcCCeEEEEEC
Confidence 877543 24678999999988766655543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.1e-05 Score=82.63 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=77.2
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~t 582 (666)
+..+++.+. .|||.+||+|++...++..|. +|+.+|. +.++..+.++ |+ +.+.+.....++.-+.+
T Consensus 176 ~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 176 NLARVTEGD--RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHhCCCCcC--EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC
Confidence 444555554 599999999999887777765 5666664 4555544332 44 33444443334332479
Q ss_pred cceEEeccccccC----CC--CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCc
Q 005981 583 YDLLHAAGLFSVE----SK--RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW 639 (666)
Q Consensus 583 yDliha~~~f~~~----~~--~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W 639 (666)
||+|.++--|... .+ ......+|.|+.|+|||||++++--..+ ..++++++.-.|
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 9999997433321 11 1235789999999999999998864332 244566788888
|
This family is found exclusively in the Archaea. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=78.90 Aligned_cols=97 Identities=22% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp 580 (666)
.+.+.+..+ ..|||+|||+|.+++.|++. +.+ -.|+.+|. +.+++.+.++ |+ +.+.+... +..++
T Consensus 69 ~~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~---~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~--~~~~~ 141 (212)
T PRK13942 69 CELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKS---GKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG--TLGYE 141 (212)
T ss_pred HHHcCCCCc--CEEEEECCcccHHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc--ccCCC
Confidence 344455555 36999999999999888765 210 03444442 4566555443 43 33444332 22232
Q ss_pred --CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 --RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 --~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
..||+|++... .+.+..++.+.|||||.+++-
T Consensus 142 ~~~~fD~I~~~~~---------~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAA---------GPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCC---------cccchHHHHHhhCCCcEEEEE
Confidence 78999998743 234556777899999999995
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.8e-05 Score=77.35 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCC---CCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYP---SQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~---d~sFDlV 342 (666)
.++.+|||.|.|+|+++..|+.. +|+..|+.+.....|+.++.. .|+.. .+...|+..-.|. ++.+|.|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEE
Confidence 45689999999999999888753 899999999888888766554 45542 3444455433332 3689999
Q ss_pred EecccccccccChHHHHHHHHHhc-cCCeEEEEEEC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRML-RAGGYFAWAAQ 377 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvL-kPGG~lv~st~ 377 (666)
+ +.+ +++..++..+.++| |+||.+++-.+
T Consensus 118 f-----LDl-p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 118 F-----LDL-PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp E-----EES-SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred E-----EeC-CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 8 444 78889999999999 99999988764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.8e-05 Score=82.45 Aligned_cols=104 Identities=20% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCCchhHHHh--ccCCeEEEeCCcchHHHHHHHHHHHcCCCce--EEeecccCCCCCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCGVASFGAYL--LPRNVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L--~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~--~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
.++..|||-=||||++.... ...+++|.|++..|+..+..++..- ++... ....|+..+|+++++||.|++-.-.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y-~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY-GIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh-CcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 45579999999999887554 3459999999999988877655443 33332 3333889999998899999973210
Q ss_pred -----cccc--cC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 -----INWT--RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 -----~h~~--~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..-. ++ ...+|..+.++|++||++++.++
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1110 11 24788999999999999999964
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.6e-05 Score=87.80 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=75.5
Q ss_pred CCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCC--CCCCCeeEEEe
Q 005981 272 GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP--YPSQAFDLIHC 344 (666)
Q Consensus 272 g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lp--f~d~sFDlVv~ 344 (666)
+.....+||||||.|.+...++.. +++|+|+...-+..+.. .+.+.++.+. +...+++.+. ++++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 345678999999999999888865 89999999877766654 4455566553 3333333222 67899999996
Q ss_pred cccccccccCh--------HHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~--------~~~L~el~RvLkPGG~lv~st 376 (666)
+.. -.|.... ..++..+.++|||||.+.+.|
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 544 6664221 378999999999999999986
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.6e-05 Score=82.34 Aligned_cols=98 Identities=14% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEee--cccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAF--ATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~--d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+.++|||||||||.++..-++. +|++||.|... .. ..+.++.++....+... .++++.+|..+.|+|++-.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~-a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DF-ARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HH-HHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4589999999999877666654 99999998643 33 33667777766544332 355555557899999975443
Q ss_pred cccc--cChHHHHHHHHHhccCCeEEE
Q 005981 349 INWT--RDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 349 ~h~~--~d~~~~L~el~RvLkPGG~lv 373 (666)
.... .-+..+|..=.+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 3222 113466666789999999874
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=5e-05 Score=81.01 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=65.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc------cc-c-ccccccCCCCCCCCCcc-----ce
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL-I-GVMHDWCEPFDTYPRTY-----DL 585 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er------Gl-i-g~~~~~ce~~~~yp~ty-----Dl 585 (666)
.+|||+|||+|.++..|++.... ..+|+++| ++.+|+.+.++ ++ + ++..|-++.+. ++..+ .+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence 45999999999999999887210 13788888 47888888775 22 2 23334433322 33332 34
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.+...|.+.. +-+...+|.++.+.|+|||.|+|.
T Consensus 142 ~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 55555565544 334568999999999999999984
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.3e-05 Score=78.81 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=95.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc----C----------
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----G---------- 319 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r----g---------- 319 (666)
..+++.|.+..+.........+||--|||.|.++-.++.+ .+.|.|+|--|+-.. ++.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceec
Confidence 3456666666653222345578999999999999999988 899999998886433 232221 0
Q ss_pred ---------------CC------------c-eEEeecccCCCCCC---CCeeEEEecccccccccChHHHHHHHHHhccC
Q 005981 320 ---------------AP------------A-MVAAFATRRLPYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (666)
Q Consensus 320 ---------------~~------------~-~~~~~d~e~Lpf~d---~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkP 368 (666)
++ . ....+|...+..++ ++||.|++. .++.-..+.-.+|..+.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHHHHHHHHHHHHhcc
Confidence 00 0 01111222222223 689999865 4466667778999999999999
Q ss_pred CeEEEEEECCCCCCHHH-------HHHHHHHHHHhhhhhhhhhhh
Q 005981 369 GGYFAWAAQPVYKHEEA-------QEEHWKEMLDLTTRLCWELVK 406 (666)
Q Consensus 369 GG~lv~st~P~~~~~~e-------l~~~w~~~~~l~~~l~W~~v~ 406 (666)
||+++=.++-.+..... ++-.|.++..+.+.++|+.+.
T Consensus 195 gG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 195 GGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 99887776544443332 444567777777777776655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.4e-05 Score=80.83 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=76.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCC-CccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDliha~~ 590 (666)
.+|||+|||+|.++.+|+++.-+ .+|+.+|. +.++..+.++ |+ +.+++..+ +...| .+||+|.++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~---~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE---AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECC
Confidence 46999999999999999986211 15666663 5666666553 54 44443332 22234 5899999861
Q ss_pred cc------c-------cCC--------CCC-CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEe
Q 005981 591 LF------S-------VES--------KRC-NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 591 ~f------~-------~~~--------~~c-~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~ 645 (666)
=+ . +.. +.. .+..++.++.+.|+|||++++--..+. ..+++++....|.-...+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence 11 1 000 000 125788999999999999998654433 688888887665544433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.3e-05 Score=83.41 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccccC
Q 005981 275 IRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d 354 (666)
...+||+|||.|-.+..-....++|.|++...+ ..++..+.. .+...|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~-----~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLL-----GGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhhc-----cccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 478999999999543322222678888887543 233333332 35556788999999999999999888888644
Q ss_pred h--HHHHHHHHHhccCCeEEEEEE
Q 005981 355 D--GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 355 ~--~~~L~el~RvLkPGG~lv~st 376 (666)
. ..+++++.|+|||||...+..
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 3 389999999999999977764
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=6e-05 Score=78.65 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=60.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+++.+.+.+.. .+..+|||||||+|.++..++++ +|+++|+++.++..++..... .....+...|+..+++
T Consensus 16 ~~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 16 RVVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc
Confidence 456666666542 34578999999999999999876 899999999888766543322 1123345556667666
Q ss_pred CCCCeeEEEeccccccc
Q 005981 335 PSQAFDLIHCSRCRINW 351 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~ 351 (666)
+ .||.|+++.. +++
T Consensus 90 ~--~~d~Vv~NlP-y~i 103 (258)
T PRK14896 90 P--EFNKVVSNLP-YQI 103 (258)
T ss_pred h--hceEEEEcCC-ccc
Confidence 4 4899997654 444
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.7e-05 Score=80.10 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=57.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..++.+.+.+.. ..+.+|||||||+|.++..|+++ +|+|+|+++.++..++.+... ....+...|+..+++
T Consensus 29 ~i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCH
Confidence 345666665542 34478999999999999999876 899999999988776543321 223455556777776
Q ss_pred CCCCeeEEEecc
Q 005981 335 PSQAFDLIHCSR 346 (666)
Q Consensus 335 ~d~sFDlVv~s~ 346 (666)
++-.+|.|+++.
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 542358888653
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.2e-05 Score=72.69 Aligned_cols=143 Identities=19% Similarity=0.261 Sum_probs=73.3
Q ss_pred cCCCceeeEeeccccchHHHHHHhhCC---CceEEEEeeccCCCCChhHHHhcccc---ccccccCCCCCCCCCccceEE
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVSGFNTLPVIYDRGLI---GVMHDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~~---~~vwvmnv~~~~~~~~l~~~~erGli---g~~~~~ce~~~~yp~tyDlih 587 (666)
++.++-.+|||+||+.|||..++++++ ..|+.+.+.+.+.......+ +|=+ .......+.+..-...+|+|.
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 455667889999999999999999996 33444444433211111111 1111 001111111111116899999
Q ss_pred eccccccCCCCC-----CHH---HHHHHhhhcccCCeEEEEE-----eChhHHHHHHHHHHhcCcEEEEEeccCCCCCce
Q 005981 588 AAGLFSVESKRC-----NMS---TIMLEMDRMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETAEGPHASY 654 (666)
Q Consensus 588 a~~~f~~~~~~c-----~~~---~~l~E~dRiLRPgG~~ii~-----d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e 654 (666)
|+..+...+++- .+. ..|.=+-+.|||||.+|+. +..+.+..++...+.+++- +-.-.++...|
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~---Kp~~sr~~s~E 173 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV---KPPSSRSESSE 173 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE---E-TTSBTTCBE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE---ECcCCCCCccE
Confidence 998666544321 111 2233334779999999985 2235566666655554332 22223456789
Q ss_pred EEEEEEe
Q 005981 655 RILTADK 661 (666)
Q Consensus 655 ~~l~~~k 661 (666)
..|||.+
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 9999875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.2e-05 Score=79.73 Aligned_cols=113 Identities=21% Similarity=0.199 Sum_probs=71.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---ccccc-ccCCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~-~~ce~~~~yp~tyDliha~~ 590 (666)
.+|||+|||.|.++.+|+...- ..+|+.+|. +.++..+.++ |+ +.+++ |+.+.++ +.+||+|.|+-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p---~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP---DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 4699999999999999987621 125666763 5666665544 54 44443 3333232 26899999862
Q ss_pred cc-------------ccCCC--------C-CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcC
Q 005981 591 LF-------------SVESK--------R-CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMG 638 (666)
Q Consensus 591 ~f-------------~~~~~--------~-c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~ 638 (666)
=+ .+... . -.+..++.++.++|+|||++++--..+ ...+.+++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 11 11110 0 013578999999999999999953333 345777776544
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=74.07 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCce--EEe-ec-ccCCC-CCCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAA-FA-TRRLP-YPSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~--~~~-~d-~e~Lp-f~d~sFDlVv 343 (666)
..++|||||.+.|.-+..|+.. +++++|+++.+...|+..+++ .|+... +.. .+ .+.+. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 3579999999999888877754 699999999998888765554 455442 222 12 22222 4568999998
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 344 ~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. -+.-.+-..++..+.++|||||.+++..
T Consensus 138 I----DadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 I----DADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred E----eCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 3 3333445689999999999999999874
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.5e-05 Score=74.87 Aligned_cols=95 Identities=23% Similarity=0.230 Sum_probs=62.1
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC-
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP- 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp- 580 (666)
...+.+..+ ..|||+|||+|.+++.|++... .|+.+|. +++++.+.++ |+ +.+.+.-. +..++
T Consensus 71 ~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~ 141 (212)
T PRK00312 71 TELLELKPG--DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG--WKGWPA 141 (212)
T ss_pred HHhcCCCCC--CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc--ccCCCc
Confidence 344444433 3599999999999998887742 3555553 4556555543 44 33443332 22333
Q ss_pred -CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 -~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
..||+|.+...+ ..+..++.+.|+|||.+++.
T Consensus 142 ~~~fD~I~~~~~~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 142 YAPFDRILVTAAA---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CCCcCEEEEccCc---------hhhhHHHHHhcCCCcEEEEE
Confidence 789999987432 34566778999999999986
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.4e-05 Score=72.98 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeecccC-C--C-CCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRR-L--P-YPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d~e~-L--p-f~d~sFD 340 (666)
..+.+|||+|||+|..+..++.. +|+..|..+ .+...+ ..++.++ ....+...+-.+ . . ...+.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 35589999999999665555433 899999987 444333 3333332 111222222111 1 0 2346899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+++.+++.- ...+.++.-+.++|+++|.++++..
T Consensus 122 ~IlasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999985543 5667889999999999999877753
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=88.09 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC-----------------CceEEeecccCCC
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-----------------PAMVAAFATRRLP 333 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~-----------------~~~~~~~d~e~Lp 333 (666)
+.+|||+|||+|.++..++.. +|+|+|+++.++..|+.+... .++ ...+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhh-
Confidence 358999999999998888754 799999999999888755443 211 123333343221
Q ss_pred CCC--CCeeEEEecccccccc---------------------------------cCh----HHHHHHHHHhccCCeEEEE
Q 005981 334 YPS--QAFDLIHCSRCRINWT---------------------------------RDD----GILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 334 f~d--~sFDlVv~s~~l~h~~---------------------------------~d~----~~~L~el~RvLkPGG~lv~ 374 (666)
+.+ ..||+|+|+--.+.-. .|. ..++.++.++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999864322100 110 3667788899999999988
Q ss_pred EE
Q 005981 375 AA 376 (666)
Q Consensus 375 st 376 (666)
-.
T Consensus 277 Ei 278 (1082)
T PLN02672 277 NM 278 (1082)
T ss_pred EE
Confidence 74
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=82.33 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhcccccCCC----CCCeEEEECCCCchhHHHhcc--------CCeEEEeCCcchHHHHHHHHHHHcCC--
Q 005981 255 ADQYLDQIAKMVPDITWGH----HIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGA-- 320 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~----~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiS~~~l~~a~~~~a~~rg~-- 320 (666)
++.|-+.|.+.+.+..... ....|||||||+|.+....++ .+|++|+-++......+ +..+..+.
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~ 241 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCC
Confidence 3455556655555433222 246899999999977643321 28999999986654443 23234443
Q ss_pred CceEEeecccCCCCCCCCeeEEEeccccccccc--ChHHHHHHHHHhccCCeEEE
Q 005981 321 PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 321 ~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~--d~~~~L~el~RvLkPGG~lv 373 (666)
...+...+++++..+ ...|+|++-.+ -.+.. -....|....|.|||||.++
T Consensus 242 ~V~vi~~d~r~v~lp-ekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 242 KVTVIHGDMREVELP-EKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TEEEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeCcccCCCCC-CceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 334555678888765 58999996433 22322 23477888999999999864
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00021 Score=73.89 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=87.5
Q ss_pred eeeEeeccccchHHHHHHhhC-C-CceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCCCCC-C-CccceE
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ-K-FDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPFDTY-P-RTYDLL 586 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~-~-~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~~~y-p-~tyDli 586 (666)
...|||+|||.|..+-.|+++ . + -|+.|+- +.+.+.|.+ .++ |.++|+.-+.+... + .+||+|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a-----~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKA-----KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCC-----cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 677999999999999999988 3 3 3444442 233333322 233 77776664443332 2 569999
Q ss_pred Eecccccc---------------CCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 587 HAAGLFSV---------------ESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 587 ha~~~f~~---------------~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
-|+==|-. ..-.|++++++.=.-++|||||++.+=-..+.+..+-+++++++|....
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 99754422 2234788899999999999999999999999999999999999999753
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.8e-05 Score=80.36 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=80.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC--CCChhHHHhcccccccc------ccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDRGLIGVMH------DWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~--~~~l~~~~erGlig~~~------~~ce~~~~yp~tyDliha~~~ 591 (666)
|.|||+|||-|.+.-.|+.+|.. .|+.+|. .-.+++-+-+-++|.-. .--|.++. .++||+|-|.||
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~----~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAK----SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCC----EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 46999999999999999999862 4555553 23445555444443211 11233444 589999999999
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE------eC------------h------hHHHHHHHHHHhcCcEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR------DS------------I------DVMDELQEIGKAMGWHV 641 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~------d~------------~------~~~~~~~~i~~~l~W~~ 641 (666)
+=|..+ --+.|.++...|||||.+|+- |. + -....|+..+++..++-
T Consensus 192 LYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 192 LYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred hhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence 888554 479999999999999999974 11 0 02677888888888874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00027 Score=74.70 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC-CC---ceEEeec-
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-AP---AMVAAFA- 328 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg-~~---~~~~~~d- 328 (666)
+-.+++.+++...++ ..++||-||.|.|..++.+.+. +++.||+.+..+..++..+..-.+ .. ..+...|
T Consensus 61 ~yhEml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 61 IYHEMLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 445555666654444 3479999999999999999876 899999999766554433222111 11 1222223
Q ss_pred ccCCCCCCCCeeEEEeccccccccc----ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTR----DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~----d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~ 393 (666)
.+-+.-...+||+|++-.. -...+ ....+++.++|.|+++|.++..+...+....++...+..+
T Consensus 140 ~~~v~~~~~~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~ 207 (282)
T COG0421 140 VEFLRDCEEKFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNV 207 (282)
T ss_pred HHHHHhCCCcCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH
Confidence 2222222348999995432 22111 0258999999999999999988543233334444444333
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=75.36 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=80.9
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-cc------cccccccCCC-CCCCCCccceEEe
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-GL------IGVMHDWCEP-FDTYPRTYDLLHA 588 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-Gl------ig~~~~~ce~-~~~yp~tyDliha 588 (666)
.-++|||+|||.|.++.+|++.- + .+.|+.+|. +..++.+.+. ++ +.+.++-+.. +...+.+||+|-+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-P--DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-C--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34679999999999999998761 1 124555553 5777777665 22 2333332211 2334678999987
Q ss_pred ccccccCC--CCCCHHHHHHHhhhcccCCeEEEEE---eChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 589 AGLFSVES--KRCNMSTIMLEMDRMLRPGGHVYIR---DSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 589 ~~~f~~~~--~~c~~~~~l~E~dRiLRPgG~~ii~---d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+ .|.... .......++.++.++|+|||.+++. .+......++.+.+.+.-.+.....+. ....|++|.|
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 5 454321 1122369999999999999999983 222233334444444443333333222 1246788876
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=73.72 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=66.5
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-ccCCC-----CCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLP-----YPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d-~e~Lp-----f~d~sFDl 341 (666)
.++||||||++|.-+.+++.. +|+++|+++.....|+. +.++.|... .+...+ .+-++ ...+.||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~-~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARE-NFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHH-HHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHH-HHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 479999999999888877743 89999999987776664 444455433 233333 22222 11368999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|+.-. .-.+...++..+.++|++||.+++..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 98432 22334578889999999999998883
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00023 Score=73.99 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=57.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..++.+.+.+.. .+..+|||||||+|.++..|+++ .|+++|+++.++..++..... .....+...|+..+++
T Consensus 16 ~i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 16 SVIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh
Confidence 445666666542 34579999999999999999876 899999999888666533321 1223345556677665
Q ss_pred CCCCee---EEEeccccccc
Q 005981 335 PSQAFD---LIHCSRCRINW 351 (666)
Q Consensus 335 ~d~sFD---lVv~s~~l~h~ 351 (666)
+ +|| +|+++. -.|+
T Consensus 90 ~--~~d~~~~vvsNl-Py~i 106 (253)
T TIGR00755 90 P--DFPKQLKVVSNL-PYNI 106 (253)
T ss_pred h--HcCCcceEEEcC-Chhh
Confidence 4 466 777543 3444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.4e-05 Score=78.74 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-ccCCC-C----CCCCee
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLP-Y----PSQAFD 340 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d-~e~Lp-f----~d~sFD 340 (666)
..++|||||+|+|..+.+++.. .|+++|.++.....|+..+ ++.|+.. .+...+ .+.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3579999999999888887753 6999999998877776544 4455542 233333 22232 1 136899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|+.-. .-.....++..+.++|+|||.+++..
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 998432 22334588899999999999998873
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.5e-05 Score=77.23 Aligned_cols=117 Identities=21% Similarity=0.355 Sum_probs=77.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-----CCChhHHHhccc--cccccccCCC-CCC-C-CCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-----FNTLPVIYDRGL--IGVMHDWCEP-FDT-Y-PRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-----~~~l~~~~erGl--ig~~~~~ce~-~~~-y-p~tyDliha~~ 590 (666)
.+||+|||.|.|..+|+.+.-+ .|++.++. ...+..+..+|+ +.+++..+.. +.. . |.+.|.||..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd---~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD---INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT---SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE-
T ss_pred eEEEecCCCCHHHHHHHHHCCC---CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe-
Confidence 6999999999999999887212 26666663 345566677788 5555443322 111 2 4899999865
Q ss_pred cccc-------CCCCCCHHHHHHHhhhcccCCeEEEE-EeChhHHHHHHHHHHhc--CcEEE
Q 005981 591 LFSV-------ESKRCNMSTIMLEMDRMLRPGGHVYI-RDSIDVMDELQEIGKAM--GWHVT 642 (666)
Q Consensus 591 ~f~~-------~~~~c~~~~~l~E~dRiLRPgG~~ii-~d~~~~~~~~~~i~~~l--~W~~~ 642 (666)
|.. .+.|=--+..|.++.|+|+|||.+.+ ||..+..+.+.+.+... .++..
T Consensus 96 -FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 96 -FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred -CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 442 22222225899999999999999999 58888888888887775 55554
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=9.1e-05 Score=74.42 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=92.7
Q ss_pred cCCCceeeEeeccccchHHHHHHhhCCCceEEE-EeeccCC-CCChhHHHhccc-----cccccccCCCCCCCCCccceE
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVM-NVVPVSG-FNTLPVIYDRGL-----IGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvm-nv~~~~~-~~~l~~~~erGl-----ig~~~~~ce~~~~yp~tyDli 586 (666)
+.....+.|.|+|||.|.--+.|+.+ |-- -|+.+|+ ..||..|.+|+. .|-+++|| + .+..|||
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~---p--~~~~dll 96 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK---P--EQPTDLL 96 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC---C--CCccchh
Confidence 55678899999999999999999998 322 4666885 799999999987 57889995 2 2778999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE--eChh--HHHHHHHHHHhcCcEEEEE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--DSID--VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~--d~~~--~~~~~~~i~~~l~W~~~~~ 644 (666)
.|+.+|.-..+- ..+|--.=--|+|||.+-+. |+.+ ....|.+.++..-|...+.
T Consensus 97 faNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~ 155 (257)
T COG4106 97 FANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELG 155 (257)
T ss_pred hhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhC
Confidence 999888766543 35666666679999999997 5544 4677888888888876543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00021 Score=75.04 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCc----hhHHHhcc-------C--CeEEEeCCcchHHHHHHH----HHHHcCCCc--------------
Q 005981 274 HIRVVMDAGCGVA----SFGAYLLP-------R--NVITMSIAPKDVHENQIQ----FALERGAPA-------------- 322 (666)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~-------~--~V~gvDiS~~~l~~a~~~----~a~~rg~~~-------------- 322 (666)
..-+|+-.||+|| +++..|.+ . +|+|.|++...+..|+.- ....++++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 44433322 1 899999999988777641 111122111
Q ss_pred -----------eEEeecccCCCCCCCCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEE
Q 005981 323 -----------MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 323 -----------~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st 376 (666)
.+...+...-++..+.||+|+|-++++.+....+ .++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1111111111213467999999999998854443 89999999999999998873
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00057 Score=74.12 Aligned_cols=102 Identities=19% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc----CCCceEEeec-ccCCCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFA-TRRLPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r----g~~~~~~~~d-~e~Lpf~d~sFDlVv~ 344 (666)
.+++||.||+|.|..++++.+. +|+.+|+++..+..++..+.... .....+...| ..-+....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999887664 79999999988766654332211 1112233333 2223334578999996
Q ss_pred cccccccccC------hHHHHH-HHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRD------DGILLL-EVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d------~~~~L~-el~RvLkPGG~lv~st 376 (666)
- +.-.+... ...+++ .+.+.|+|||.+++..
T Consensus 183 D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 D-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred c-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 4 22222111 235777 8999999999998763
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00032 Score=70.69 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccc--cccccCCCCCCCCCccce
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIG--VMHDWCEPFDTYPRTYDL 585 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig--~~~~~ce~~~~yp~tyDl 585 (666)
.+++.+..+.-+-|||+|||+|--++.|.+.|. +|+ .+| ++.||+++.+|-+=| ++.|--|.+++=|.|||-
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 355555554556699999999999999999996 443 455 468999999965532 235556788887899997
Q ss_pred EEecccc---ccCCCCCCHH-----HHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcE
Q 005981 586 LHAAGLF---SVESKRCNMS-----TIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 586 iha~~~f---~~~~~~c~~~-----~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~ 640 (666)
+-+-+.. .+....|+.+ ..+.-+...|++|+..++.=..+....++.|...=.|.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 7765332 2222223322 34566889999999999996655555555555555554
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=79.71 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=67.7
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCCCCCCCeeEEEecccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+|||++||+|.++..++.. .|+++|+++..+..++. .++.+++... +...|+..+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 58999999999999888643 69999999988877664 4444455432 44445443321146799999643
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. ..+..++..+.+.+++||+++++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1 334578888788899999999994
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=67.76 Aligned_cols=100 Identities=19% Similarity=0.137 Sum_probs=62.4
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCch-hHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCC-
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVAS-FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP- 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~-~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~- 335 (666)
+.|.+.++. .+..+|||||||+|. ++..|.+. +|+++|+++..+ +.+++.+.. +...|.-+-.+.
T Consensus 6 ~~l~~~~~~----~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~~--~v~dDlf~p~~~~ 74 (134)
T PRK04148 6 EFIAENYEK----GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGLN--AFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHhccc----ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCCe--EEECcCCCCCHHH
Confidence 344444442 344789999999995 88888876 999999999754 444555543 333343332222
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
-+.+|+|.+.+. ..+....+.++.+.+ |.-+++..
T Consensus 75 y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 75 YKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 367999997654 234455666666654 45566664
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.001 Score=68.55 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=73.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCN 600 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~ 600 (666)
.|-|||||-|-.|. .....|..|.++++...-+. +--| ..|.-++|.|++.+-- |.. ..+
T Consensus 183 vIaD~GCGEakiA~---~~~~kV~SfDL~a~~~~V~~--cDm~-----------~vPl~d~svDvaV~CL--SLM--gtn 242 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS---SERHKVHSFDLVAVNERVIA--CDMR-----------NVPLEDESVDVAVFCL--SLM--GTN 242 (325)
T ss_pred EEEecccchhhhhh---ccccceeeeeeecCCCceee--cccc-----------CCcCccCcccEEEeeH--hhh--ccc
Confidence 48999999998776 22235788888887632111 0000 0233348999876431 222 357
Q ss_pred HHHHHHHhhhcccCCeEEEEEeChhH---HHHHHHHHHhcCcEEEEEeccCC
Q 005981 601 MSTIMLEMDRMLRPGGHVYIRDSIDV---MDELQEIGKAMGWHVTLRETAEG 649 (666)
Q Consensus 601 ~~~~l~E~dRiLRPgG~~ii~d~~~~---~~~~~~i~~~l~W~~~~~~~~~~ 649 (666)
+.+.+.|.+|||||||.++|.+-... .....+-+..|+.++...+..+.
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~ 294 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNK 294 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcc
Confidence 78999999999999999999865443 34466678899999887776543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=4.8e-05 Score=75.67 Aligned_cols=120 Identities=20% Similarity=0.305 Sum_probs=82.2
Q ss_pred cCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC
Q 005981 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP 321 (666)
Q Consensus 244 Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~ 321 (666)
|-|.|.||.-..++....+.---+ ..+..+.++||+|+|.|..+..++.. +|.+.++|..|..+ -++++..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~r-----L~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDR-----LKKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHH-----HhhcCCc
Confidence 456788886666555444432223 24556789999999999999999887 88888888776543 2333322
Q ss_pred ceEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccC-CeEEEEE
Q 005981 322 AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRA-GGYFAWA 375 (666)
Q Consensus 322 ~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkP-GG~lv~s 375 (666)
. +.. .+.--.+-+||+|.|.+. +.-+.++..+|+.++.+|+| .|..+++
T Consensus 157 V-l~~---~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 V-LTE---IEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred e-eee---hhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 2 111 111113456999998776 44447888999999999999 8988877
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00021 Score=76.12 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=59.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLP 333 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~Lp 333 (666)
.+++.+.+.+.. .+..+|||||||+|.++..+++. +|+++|+++.++..++.+++..... ...+...|+....
T Consensus 23 ~i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 456666665542 34578999999999999999876 8999999999888776554432211 2334445555544
Q ss_pred CCCCCeeEEEeccccccc
Q 005981 334 YPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~ 351 (666)
+ ..||.|+++. -.++
T Consensus 99 ~--~~~d~VvaNl-PY~I 113 (294)
T PTZ00338 99 F--PYFDVCVANV-PYQI 113 (294)
T ss_pred c--cccCEEEecC-Cccc
Confidence 4 4689998653 3555
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00031 Score=71.11 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=79.0
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh-----ccccc-cccccCCCCCCCCCccceEEecc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----RGLIG-VMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e-----rGlig-~~~~~ce~~~~yp~tyDliha~~ 590 (666)
.....+||.|||.|.....|+-.=++ .|-=|-|+ +.-++.|.+ .+-++ .|..=-|.|.+-+..||+||++.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-S-EEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CCcceEEecccccchhHHHHHHHhcC-EeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 35777999999999999988665332 11112222 355666652 22222 22222233343347999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----------hh-----HHHHHHHHHHhcCcEEEEEeccCC
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------ID-----VMDELQEIGKAMGWHVTLRETAEG 649 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----------~~-----~~~~~~~i~~~l~W~~~~~~~~~~ 649 (666)
+..|+.+. ++...|.-.-.-|||+|.+||.|+ .+ ..+.+++|.++=..++...+...|
T Consensus 131 ~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 131 CLGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp -GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred hhccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 99999984 667788888899999999999733 22 268899999999999887665544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00041 Score=68.64 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCCeEEEECCCCchhH--HHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFG--AYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a--~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+++|+|+|||||.++ ..++.. .|+|+|+++..+..+. +.+.+.+....+...|+.+. ...||.|+.+--+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 4578999999999665 444443 9999999998887665 44444444445555555554 467899987654333
Q ss_pred cccCh-HHHHHHHHHhc
Q 005981 351 WTRDD-GILLLEVNRML 366 (666)
Q Consensus 351 ~~~d~-~~~L~el~RvL 366 (666)
+.... ..+|....++-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 32222 24455444443
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=2.6e-05 Score=70.38 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=60.2
Q ss_pred eEeeccccchHHHHHHhhCC-CceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCCC-CCC-CccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPFD-TYP-RTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~~-~yp-~tyDliha~ 589 (666)
.|||+|||.|.+..++++.+ . +++.+|- +..++.+.. .++ +.+++.....+. .++ ..||+|-++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~-----~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAA-----RVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTC-----EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred EEEEcCcchHHHHHHHHHHCCC-----eEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 59999999999999999987 5 4555542 233333332 122 333333222222 233 899999998
Q ss_pred cccccCC-----CCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 590 GLFSVES-----KRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 590 ~~f~~~~-----~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
--|.... .+-....++.++.|+|||||.+++-
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7776421 1123468899999999999999873
|
... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00099 Score=66.46 Aligned_cols=117 Identities=12% Similarity=-0.035 Sum_probs=70.1
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
..+...+.+...+.... ...+|||++||+|.++..++.+ .|+++|.++..+..++.+. ...+.. ..+...|
T Consensus 32 t~~~vrea~f~~l~~~~---~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~-~~~~~~~~~~~~~~D 107 (189)
T TIGR00095 32 TTRVVRELFFNILRPEI---QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENL-ALLKSGEQAEVVRNS 107 (189)
T ss_pred chHHHHHHHHHHHHHhc---CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHhCCcccEEEEehh
Confidence 34444555556554322 3478999999999999999876 7999999998877665443 334443 2334444
Q ss_pred c-cCCC-C-CCC-CeeEEEecccccccccChHHHHHHHH--HhccCCeEEEEEE
Q 005981 329 T-RRLP-Y-PSQ-AFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAA 376 (666)
Q Consensus 329 ~-e~Lp-f-~d~-sFDlVv~s~~l~h~~~d~~~~L~el~--RvLkPGG~lv~st 376 (666)
+ ..+. + ... .||+|+.--- +.. .....++..+. .+|+++|.+++-.
T Consensus 108 ~~~~l~~~~~~~~~~dvv~~DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 108 ALRALKFLAKKPTFDNVIYLDPP-FFN-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHHHhhccCCCceEEEECcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 3 2222 1 122 4788875332 222 22334444443 4788999887764
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=79.63 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchhHHHhcc---CCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...++|+|||.|....++.. .+++|++.++..+..+...... .++. ..+...+....||+++.||.+.+..+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 34799999999977776654 3899999998766555433222 2222 1234446778899999999999988877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
|. ++...+++|++|+++|||+++..
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeH
Confidence 77 89999999999999999999775
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=64.02 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=62.9
Q ss_pred eEEEECCCCch----hHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 277 VVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 277 ~VLDIGCGtG~----~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+++|||+|.|. ++....+.+++-+|....-+.-. ...+.+-++.+ .+....++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL-~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFL-KEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHH-HHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHH-HHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 79999999994 34444455899999887644322 24455567764 344444555 445689999996444
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEE
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456788888999999999998874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.6e-05 Score=71.53 Aligned_cols=69 Identities=22% Similarity=0.125 Sum_probs=52.7
Q ss_pred CCCChhHHHhccc---------cccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 553 GFNTLPVIYDRGL---------IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 553 ~~~~l~~~~erGl---------ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+++||+++.+|-- +.+.+.-++.++.-+++||+|-+..++.+..+ ...+|.|+.|+|||||.++|.|-
T Consensus 6 S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 6 SSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred CHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 4688888865421 56677777877643489999999877766654 47999999999999999998764
Q ss_pred h
Q 005981 624 I 624 (666)
Q Consensus 624 ~ 624 (666)
.
T Consensus 83 ~ 83 (160)
T PLN02232 83 N 83 (160)
T ss_pred C
Confidence 3
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0003 Score=71.06 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
+-.++.+.+...........-++|||||=+......-... .|+.||+.+.. + .+...|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~--------------~-~I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH--------------P-GILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCC--------------C-CceeeccccCCC
Confidence 3445555544432211122358999998765433332222 79999987631 1 133345555554
Q ss_pred ---CCCCeeEEEecccccccccChH---HHHHHHHHhccCCeE-----EEEEEC
Q 005981 335 ---PSQAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGY-----FAWAAQ 377 (666)
Q Consensus 335 ---~d~sFDlVv~s~~l~h~~~d~~---~~L~el~RvLkPGG~-----lv~st~ 377 (666)
++++||+|.|+.+ +.+.+++. ..++.+.+.|+|+|. |++..+
T Consensus 98 p~~~~e~FdvIs~SLV-LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 98 PKNESEKFDVISLSLV-LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred CCCcccceeEEEEEEE-EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 3679999999877 55557764 899999999999999 877753
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0064 Score=64.50 Aligned_cols=138 Identities=20% Similarity=0.325 Sum_probs=83.5
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHH----Hhccccc--cccc-cCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI----YDRGLIG--VMHD-WCEPFDTYP 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~----~erGlig--~~~~-~ce~~~~yp 580 (666)
.+.+....+. +|||+|||+|-.|+.|+++. + ...|+-+|. ...++.+ .+.++=+ ++++ -+|+. .
T Consensus 151 l~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~-p--~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---~ 222 (300)
T COG2813 151 LETLPPDLGG--KVLDLGCGYGVLGLVLAKKS-P--QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV---E 222 (300)
T ss_pred HHhCCccCCC--cEEEeCCCccHHHHHHHHhC-C--CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc---c
Confidence 3444544333 89999999999999999983 1 113333442 2333332 2234433 3433 33332 2
Q ss_pred CccceEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEEeC--hhHHHHHHHHHHhcCcEEEEEeccCCCCCceEE
Q 005981 581 RTYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRDS--IDVMDELQEIGKAMGWHVTLRETAEGPHASYRI 656 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~d~--~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~ 656 (666)
..||+|-|+==|...++--. .+.++.+.-+-|++||.++|=-+ .....+|+++.. ++...... +..+|
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~V 294 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKV 294 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEE
Confidence 59999999977775543211 13788889999999999988543 334566666555 44444332 35788
Q ss_pred EEEEeC
Q 005981 657 LTADKR 662 (666)
Q Consensus 657 l~~~k~ 662 (666)
|-++|.
T Consensus 295 l~a~k~ 300 (300)
T COG2813 295 LRAKKA 300 (300)
T ss_pred EEEecC
Confidence 888773
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=66.90 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=72.2
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc-CC--CceEEeecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-GA--PAMVAAFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r-g~--~~~~~~~d~e~L 332 (666)
+-.+++...+-..+ +.+++||=||.|.|..++.+++. +|+-||+++..+..++.-+..-. +. +..-......+
T Consensus 57 iYHEmLvHppl~~h-~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~- 134 (262)
T PRK00536 57 IESELLAHMGGCTK-KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD- 134 (262)
T ss_pred hHHHHHHHHHHhhC-CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhh-
Confidence 34455555554333 56789999999999999999987 79999999987765543111111 11 11111111111
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
-..++||+|++-.. ....+.+.++|.|+|||.++..+-
T Consensus 135 -~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 135 -LDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred -ccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECCC
Confidence 12368999995422 346788999999999999998643
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00036 Score=74.86 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
....+|+|.|.|..+..+... +|-++++....+-+++.+.+ .|+...... ..++.|-. |+|++-.+++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gd-mfq~~P~~----daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGD-MFQDTPKG----DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccc-ccccCCCc----CeEEEEeecccCC
Confidence 578999999999999888776 78888887766655544443 343333332 24555533 5999999999995
Q ss_pred cC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 353 RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 ~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++ ...+|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 33 34999999999999999999864
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00058 Score=68.81 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=74.9
Q ss_pred hhccccccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc--C--CeEEEeCCcchHHHH
Q 005981 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHEN 310 (666)
Q Consensus 235 ~~~~g~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiS~~~l~~a 310 (666)
++..|-.+.+.-...+|..+...--.++.+.+. ++.+|||+.||.|.|+..++. . .|+++|++|..+...
T Consensus 68 ~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL 141 (200)
T ss_dssp EEETTEEEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH
T ss_pred EEeCCEEEEEccceEEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH
Confidence 333444444444455665555444456665543 458999999999999988886 3 799999999877655
Q ss_pred HHHHHHHcCCCce--EEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEE
Q 005981 311 QIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 311 ~~~~a~~rg~~~~--~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv 373 (666)
+ +.++.+++... ....|...+.. .+.||-|++... .....+|..+.+++|+||.+.
T Consensus 142 ~-~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 142 K-ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp H-HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred H-HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 4 45555565542 34445555543 689999986532 334568888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00047 Score=69.10 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=66.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhc----cC--CeEEEeCCcchHHHHHHHHHHHc----------CCCc
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL----PR--NVITMSIAPKDVHENQIQFALER----------GAPA 322 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~----~~--~V~gvDiS~~~l~~a~~~~a~~r----------g~~~ 322 (666)
-..+++.|...+ .++.+.||+|.|+|.++..++ .. .++|||.-+..+..+..+.-+.- ....
T Consensus 69 ha~~le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 69 HATALEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 334444444222 345789999999998776554 22 44899888766554443222111 0112
Q ss_pred eEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 323 MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 323 ~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.+.+.|....--+...||.|||.. ......+++...|++||.+++-
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCccCCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 344455444444568899999863 3345667888899999999885
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=64.64 Aligned_cols=103 Identities=18% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.....+||||||+|..+..|++. -..++|++|..+... .+-|+.++........|... .+..++.|+++.+.-
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~T-l~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEAT-LETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPP 119 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHH-HHHHHhcCCccceeehhHHh-hhccCCccEEEECCC
Confidence 34678999999999888888765 478899999766433 35565555443333333211 123388898886543
Q ss_pred ccc--------------cc--cC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RIN--------------WT--RD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h--------------~~--~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
... |. .+ .+.++..+..+|.|.|.|++...
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 222 21 11 12567778889999999999864
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00031 Score=75.58 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=61.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-c-----c-ccccc-CCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-I-----G-VMHDW-CEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-i-----g-~~~~~-ce~~~~yp~tyDliha~~ 590 (666)
..|||+|||+|.++.+|+++|+ +|+.+| ++++++.+.+|.- . + ....+ +..+...+.+||+|-|.+
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3699999999999999999987 677777 4688888877632 1 0 00011 111233468999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVY 619 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i 619 (666)
++.|..+. .+..++..+.++ .+||.+|
T Consensus 221 vL~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 98886542 234566666664 4555544
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00068 Score=67.01 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCeEEEECCCCchhHHHhcc--C--C---------eEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLP--R--N---------VITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~--~--~---------V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~s 338 (666)
+...+||--||+|++...-+. . . ++|.|+++.++..++.+ +...++.. .+...|+.++++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCC
Confidence 457899999999988754322 1 3 77999999999877754 44455543 3455578888877889
Q ss_pred eeEEEecccccccccC---h----HHHHHHHHHhccCCeEEEEE
Q 005981 339 FDLIHCSRCRINWTRD---D----GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 339 FDlVv~s~~l~h~~~d---~----~~~L~el~RvLkPGG~lv~s 375 (666)
+|.|+++.-.-.-... . ..+++++.|+|++...++++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999986432111111 1 26688899999995455444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00038 Score=72.11 Aligned_cols=91 Identities=21% Similarity=0.386 Sum_probs=68.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcccc-ccccccCCCCCCCCCccceEEeccccccC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLI-GVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGli-g~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
+..++||+|||-|+.-+.|+..=- +|...+ +..|...-.+||.- =-..+|-+ =+..||+|-|-.|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-----~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvL--- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-----EVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVL--- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-----eEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhh---
Confidence 567899999999999999987611 344444 35778888889982 12244632 25689999998655
Q ss_pred CCCCCHH-HHHHHhhhcccCCeEEEEE
Q 005981 596 SKRCNMS-TIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 596 ~~~c~~~-~~l~E~dRiLRPgG~~ii~ 621 (666)
|||+-+ .+|.+|.+.|+|+|.+|+.
T Consensus 162 -DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 488755 8889999999999999996
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00094 Score=70.75 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=61.8
Q ss_pred ceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc------cc-----cccccccCCCC-CCCCCcc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR------GL-----IGVMHDWCEPF-DTYPRTY 583 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er------Gl-----ig~~~~~ce~~-~~yp~ty 583 (666)
+-++|||+|||.|+.++.+++. ++ .+|+-++. +.+++.+.+. |+ +.+.++-...+ ..-+++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~----~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSV----EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCC----CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 4578999999999999999887 32 24555553 4566666542 11 23333332222 2224799
Q ss_pred ceEEeccccccCCC--CCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~--~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|+|-++ ++..... .---...+.++.|+|+|||.+++.
T Consensus 152 DvIi~D-~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVD-STDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEEC-CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999985 2222110 001146788999999999999995
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00069 Score=70.65 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=63.2
Q ss_pred CCCCeEEEECCCCchhHHHhc-cC--CeEEEeCCcchHHHHHHHHHHH---------------cCC--------------
Q 005981 273 HHIRVVMDAGCGVASFGAYLL-PR--NVITMSIAPKDVHENQIQFALE---------------RGA-------------- 320 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~-~~--~V~gvDiS~~~l~~a~~~~a~~---------------rg~-------------- 320 (666)
.++.++||||||.-..-..-+ +. +|+..|+++....+.+.....+ .|.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 345789999999864422222 22 8999999987665443211111 110
Q ss_pred CceEEeecccC-CCCCC-----CCeeEEEecccccccccChH---HHHHHHHHhccCCeEEEEEE
Q 005981 321 PAMVAAFATRR-LPYPS-----QAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 321 ~~~~~~~d~e~-Lpf~d-----~sFDlVv~s~~l~h~~~d~~---~~L~el~RvLkPGG~lv~st 376 (666)
...+...|..+ -|+.. ..||.|+++.|+.....+.+ .+++++.++|||||+|++..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01122334332 33332 35999999999888887876 78999999999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00044 Score=71.26 Aligned_cols=126 Identities=10% Similarity=0.124 Sum_probs=73.0
Q ss_pred eeeEeeccccchHHHHHHhh----CCCceEEEEeeccCC-CCChhHH----Hhccc---ccccccc-CCCCCCC-----C
Q 005981 519 LRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSG-FNTLPVI----YDRGL---IGVMHDW-CEPFDTY-----P 580 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~-~~~l~~~----~erGl---ig~~~~~-ce~~~~y-----p 580 (666)
-++|||+|||+|.-+.+|+. .| .|+.+|. +..+.+| .+.|+ |.+.++- .|.++.+ .
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g------~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDG------RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCC------EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 45799999999975444433 23 3444543 3344443 33455 4444332 2222221 2
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe---------Ch--------hHHHHHHHH----HHhcCc
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---------SI--------DVMDELQEI----GKAMGW 639 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d---------~~--------~~~~~~~~i----~~~l~W 639 (666)
.+||+|..+. +.-.+..++.++-|.|||||.+++.+ .. .....|+++ ...=+|
T Consensus 143 ~~fD~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~ 216 (234)
T PLN02781 143 PEFDFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRV 216 (234)
T ss_pred CCCCEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCe
Confidence 6899998872 12345678888999999999999742 10 112344444 334466
Q ss_pred EEEEEeccCCCCCceEEEEEEeC
Q 005981 640 HVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 640 ~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
...+....+ .+++++|.
T Consensus 217 ~~~~lp~gd------G~~i~~k~ 233 (234)
T PLN02781 217 EISQISIGD------GVTLCRRL 233 (234)
T ss_pred EEEEEEeCC------ccEEEEEe
Confidence 666666544 48888874
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00067 Score=65.79 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=75.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
-..+.++..+.- ..+.-|||+|.|||.++..++.+ .+++++.++...+.... +.....+..+|+..
T Consensus 35 ~lA~~M~s~I~p----esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~-----~~p~~~ii~gda~~ 105 (194)
T COG3963 35 ILARKMASVIDP----ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ-----LYPGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHhccCc----ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH-----hCCCccccccchhh
Confidence 344555555542 34568999999999999999876 79999999976543322 11111233333333
Q ss_pred CC-----CCCCCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEE
Q 005981 332 LP-----YPSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lp-----f~d~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st 376 (666)
+. +.+..||.|+|..-+..+..... ++|.++...|++||.++--+
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 32 56788999998876666643333 78899999999999998764
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00077 Score=75.84 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=72.8
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCC-CCCCCc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPF-DTYPRT 582 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~-~~yp~t 582 (666)
+.+..+ .+|||||||.|+++.+|++. +-+ ..|+.+|. +.+++.+.+ .|+ +-+.+.....+ ..++++
T Consensus 246 l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~---~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 246 LDPKGG--DTVLDACAAPGGKTTHIAELLKNT---GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred hCCCCC--CEEEEeCCCCCHHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 444444 46999999999999998875 100 14555663 455555543 354 33443332222 234589
Q ss_pred cceEEeccccccCC------C------CCCH-------HHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHhc-C
Q 005981 583 YDLLHAAGLFSVES------K------RCNM-------STIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKAM-G 638 (666)
Q Consensus 583 yDliha~~~f~~~~------~------~c~~-------~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~l-~ 638 (666)
||+|-++.-.+..+ + ..++ ..+|.++-|+|||||.++++ ...+.-..++.+++.- .
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPE 400 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCC
Confidence 99998653222111 0 0111 36899999999999999985 2223444566666654 2
Q ss_pred cEE
Q 005981 639 WHV 641 (666)
Q Consensus 639 W~~ 641 (666)
|+.
T Consensus 401 ~~~ 403 (444)
T PRK14902 401 FEL 403 (444)
T ss_pred cEE
Confidence 554
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=68.62 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC----CceEEeecc-cCCCCCCC-CeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA----PAMVAAFAT-RRLPYPSQ-AFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~----~~~~~~~d~-e~Lpf~d~-sFDlV 342 (666)
.++++||-||.|.|..++.+.+. +|+.||+++..+..++.-+...... ...+...|. .-+.-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 35789999999999999999875 7999999998776665433332221 223333332 11111223 89999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
+.-.. ...... ...+++.+.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 95332 222111 2488999999999999999875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00094 Score=72.75 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=81.5
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc--------c-c----cccccccCCC-CCCCCC
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR--------G-L----IGVMHDWCEP-FDTYPR 581 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er--------G-l----ig~~~~~ce~-~~~yp~ 581 (666)
.+-++||++|||.|+.++.+++.+ -+.+|+-++- +.++++|.+. | + +.+.++-+-. +..-++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~---~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE---TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC---CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 445789999999999999999874 1235555553 5777877751 1 1 2222222111 122247
Q ss_pred ccceEEeccccccCC---CCCCHHHHHHHhhhcccCCeEEEEEeC-----hhHHHHHHHHHHhcCcEEEEEeccCCC-CC
Q 005981 582 TYDLLHAAGLFSVES---KRCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTLRETAEGP-HA 652 (666)
Q Consensus 582 tyDliha~~~f~~~~---~~c~~~~~l~E~dRiLRPgG~~ii~d~-----~~~~~~~~~i~~~l~W~~~~~~~~~~~-~~ 652 (666)
.||+|-++. ..... .+---.+.+..+.|.|+|||.+++... .+....+.+.++.....+....+---. ..
T Consensus 226 ~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~ 304 (374)
T PRK01581 226 LYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGT 304 (374)
T ss_pred CccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCC
Confidence 899999872 21111 111114788999999999999998633 222233445455555444433221111 12
Q ss_pred ceEEEEEEeC
Q 005981 653 SYRILTADKR 662 (666)
Q Consensus 653 ~e~~l~~~k~ 662 (666)
...+++|.|.
T Consensus 305 ~WgF~~as~~ 314 (374)
T PRK01581 305 DWGFHIAANS 314 (374)
T ss_pred ceEEEEEeCC
Confidence 3677777764
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00056 Score=71.67 Aligned_cols=122 Identities=17% Similarity=0.132 Sum_probs=69.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCcc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~ty 583 (666)
.+.+..+. .|||+|||.|+.+.+|++.--+ .-.|+.+|. +.+++.+.++ |+ +-+.+.-...+......|
T Consensus 66 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~--~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 66 ALEPDPPE--RVLDMAAAPGGKTTQISALMKN--EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HhCCCCcC--EEEEECCCchHHHHHHHHHcCC--CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence 34455553 4999999999999888764000 003566664 4555444332 54 344444433333333569
Q ss_pred ceEEeccccccCC------C------CCC-------HHHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHh
Q 005981 584 DLLHAAGLFSVES------K------RCN-------MSTIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKA 636 (666)
Q Consensus 584 Dliha~~~f~~~~------~------~c~-------~~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~ 636 (666)
|.|-++--.+..+ + .-+ -.++|.++-++|||||+++++ ...+.-..++.+++.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 9998643322211 0 001 126899999999999999997 233334445555544
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=72.60 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC-CCCCCeeEEE--
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIH-- 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp-f~d~sFDlVv-- 343 (666)
.++.+|||++||.|.=+.++++. .|++.|+++.-+...+. .....|+.+ .+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~-nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA-NISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 35579999999999766665543 79999999987765553 444456655 33334444442 2236799999
Q ss_pred --ecccc---------cccccC--------hHHHHHHHHHhccCCeEEEEEE
Q 005981 344 --CSRCR---------INWTRD--------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 344 --~s~~l---------~h~~~d--------~~~~L~el~RvLkPGG~lv~st 376 (666)
|+... ..|..+ ...+|..+.+.|||||.++.+|
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 55331 122111 1367888999999999999997
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00098 Score=69.32 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=65.0
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-ccCCCC------CCCCee
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLPY------PSQAFD 340 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d-~e~Lpf------~d~sFD 340 (666)
.++|||||+++|.-+.+++.. +|+++|.++.....|+..+. +.|+.. .+...+ .+.|+- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~-~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ-KAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 478999999999877766643 89999999877766664444 345433 222222 232321 136899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|+.- +.-..-..++..+.+.|++||.+++..
T Consensus 159 ~iFiD----adK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVD----ADKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEec----CCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 99843 222333577888899999999998863
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00066 Score=73.25 Aligned_cols=100 Identities=17% Similarity=0.059 Sum_probs=60.2
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCC-CceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp 580 (666)
.+.+.++.+. .|||+|||+|.+++.|++.. ..- .|+.+|. +.+++.+.+ .|+ +.+.+.-........
T Consensus 73 l~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g---~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 73 MEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKG---LVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 3445555553 59999999999999998751 100 2445553 456655544 354 223332221111112
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..||+|.+.. .+..+...+.|.|||||.+++-.
T Consensus 148 ~~fD~Ii~~~---------g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTV---------GVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECC---------chHHhHHHHHHhcCCCCEEEEEe
Confidence 6799999862 22345556778999999998854
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0073 Score=59.91 Aligned_cols=138 Identities=19% Similarity=0.262 Sum_probs=89.7
Q ss_pred hhhhhh--hHhHHHHHHHH-HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CC---ChhHHHhc-
Q 005981 492 ELFKAE--SKYWNEIIESY-VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FN---TLPVIYDR- 563 (666)
Q Consensus 492 ~~f~~d--~~~w~~~v~~Y-~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~---~l~~~~er- 563 (666)
+.|..+ ...-|+-|.-- ...|.+..+.+ ++|+|||+|+.+-.++-.+ =..-|+.++. +. +.+...+|
T Consensus 7 ~~F~~~~~~p~TK~EIRal~ls~L~~~~g~~--l~DIGaGtGsi~iE~a~~~---p~~~v~AIe~~~~a~~~~~~N~~~f 81 (187)
T COG2242 7 ELFERDEGGPMTKEEIRALTLSKLRPRPGDR--LWDIGAGTGSITIEWALAG---PSGRVIAIERDEEALELIERNAARF 81 (187)
T ss_pred hhhccCCCCCCcHHHHHHHHHHhhCCCCCCE--EEEeCCCccHHHHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHh
Confidence 444444 33344444311 23456667765 9999999999887776221 1135677774 23 33333343
Q ss_pred cc--cccccccC-CCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCc
Q 005981 564 GL--IGVMHDWC-EPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGW 639 (666)
Q Consensus 564 Gl--ig~~~~~c-e~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W 639 (666)
|+ +-+...+. |.++.+| ++|.|--.+ + -.++.+|......|||||.+|.. -+.+...++-+.++.+.+
T Consensus 82 g~~n~~vv~g~Ap~~L~~~~-~~daiFIGG-----g--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 82 GVDNLEVVEGDAPEALPDLP-SPDAIFIGG-----G--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CCCcEEEEeccchHhhcCCC-CCCEEEECC-----C--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 44 44555553 2244555 788877653 2 46789999999999999999997 678888888899999999
Q ss_pred -EEE
Q 005981 640 -HVT 642 (666)
Q Consensus 640 -~~~ 642 (666)
++.
T Consensus 154 ~ei~ 157 (187)
T COG2242 154 REIV 157 (187)
T ss_pred ceEE
Confidence 543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00059 Score=76.49 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCC-
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTY- 579 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~y- 579 (666)
.+++..|. .|||||||.||.+.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+.-...++.+
T Consensus 232 ~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g-----~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 232 LMELEPGL--RVLDTCAAPGGKTTAIAELMKDQG-----KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV 304 (431)
T ss_pred HhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence 34555554 5999999999999888775 22 4666663 5666655443 54 33333222223322
Q ss_pred CCccceEEeccccccCCCCC-------------------CHHHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHh
Q 005981 580 PRTYDLLHAAGLFSVESKRC-------------------NMSTIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKA 636 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c-------------------~~~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~ 636 (666)
+.+||.|-++.--|..+.-. .-..+|.+.-+.|||||.++++ ...+..+.|+.++++
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 47899998753322221100 0136788999999999999997 444555556666553
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00065 Score=76.07 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=71.6
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCC-CC-Cc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDT-YP-RT 582 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~-yp-~t 582 (666)
.+++..|. .|||+|||.|+.+.+|++..-. ..|+.+|. +.++..+.++ |+ +.+.+.-+..... ++ .+
T Consensus 239 ~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 239 LLAPQNGE--RVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HcCCCCCC--EEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 34555553 5999999999999999887311 14666663 4555555433 43 3333222222222 33 78
Q ss_pred cceEEeccccccCC------------CCCC-------HHHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHh
Q 005981 583 YDLLHAAGLFSVES------------KRCN-------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKA 636 (666)
Q Consensus 583 yDliha~~~f~~~~------------~~c~-------~~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~ 636 (666)
||.|-++.-++..+ ..-+ ...+|.++-++|||||+++++. ..+..+.++..+++
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 99998543322111 0001 1368999999999999999873 34444556666554
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00081 Score=75.71 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=69.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp 580 (666)
.+....| ..|||+|||.|+.+.+|++. +. .|+.+|. +.+++.+.+ .|+ |.+.....+.+. -+
T Consensus 245 ~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~-----~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 245 LLNPQPG--STVLDLCAAPGGKSTFMAELMQNRG-----QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PE 316 (445)
T ss_pred hcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCc-----EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cC
Confidence 3444445 35999999999998887763 22 4566663 455554433 354 333322222222 13
Q ss_pred CccceEEec----c--ccccCC------CCCCH-------HHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHhc
Q 005981 581 RTYDLLHAA----G--LFSVES------KRCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAM 637 (666)
Q Consensus 581 ~tyDliha~----~--~f~~~~------~~c~~-------~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~l 637 (666)
.+||+|-++ + ++.... ...++ ..+|.++-|+|||||.++++. ..+....|+.++++-
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 689999853 2 222110 00111 268999999999999999973 334455666776653
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0022 Score=67.62 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=66.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc---C--CeEEEeCCcchHHHHHHHHHHHcC-CCce-EEe-ec
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---R--NVITMSIAPKDVHENQIQFALERG-APAM-VAA-FA 328 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~---~--~V~gvDiS~~~l~~a~~~~a~~rg-~~~~-~~~-~d 328 (666)
..+.++...+++ -.+++|||+|||.|.-.-...+ . +++++|.|+.|+..++. ...... .... ... .-
T Consensus 20 ~vl~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 20 RVLSELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhcccccccchhhhhhh
Confidence 445566655554 3567999999999964443332 2 89999999998866543 222211 1110 000 00
Q ss_pred ccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+..++. ..|+|++++++..+.+.. ..+++.+.+.+.+ ++++.++
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 1223332 339999999988885421 2566666666655 8888864
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00083 Score=75.38 Aligned_cols=126 Identities=16% Similarity=0.253 Sum_probs=75.1
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCC----C
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFD----T 578 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~----~ 578 (666)
.+++..|. .|||+|||.||.+.+|++. +-. -.|+.+|. ..+++.+.++ |+ +.+.+.-.+.+. .
T Consensus 247 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~---g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 247 LLDPQPGE--VILDACAAPGGKTTHIAELMGDQ---GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321 (434)
T ss_pred HhCCCCcC--EEEEeCCCCchhHHHHHHHhCCC---ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccc
Confidence 34555554 4999999999999998875 100 13566663 4566555432 44 333332222222 1
Q ss_pred CCCccceEEec------cccccCCC---C---CC-------HHHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHH
Q 005981 579 YPRTYDLLHAA------GLFSVESK---R---CN-------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGK 635 (666)
Q Consensus 579 yp~tyDliha~------~~f~~~~~---~---c~-------~~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~ 635 (666)
.+.+||.|-++ |++.+..+ + .+ -..+|.++-|+|||||+++++. ..+....|+..++
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~ 401 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA 401 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence 23689999864 22222110 0 11 2478999999999999999873 3455667777776
Q ss_pred hc-CcEE
Q 005981 636 AM-GWHV 641 (666)
Q Consensus 636 ~l-~W~~ 641 (666)
+- .|+.
T Consensus 402 ~~~~~~~ 408 (434)
T PRK14901 402 RHPDWKL 408 (434)
T ss_pred hCCCcEe
Confidence 65 4653
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0008 Score=75.31 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=69.0
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC-C-CceEEEEeeccCC-CCChhHHHhc----cc-ccc--ccccCCCCCC--
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ-K-FDCWVMNVVPVSG-FNTLPVIYDR----GL-IGV--MHDWCEPFDT-- 578 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~-~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~--~~~~ce~~~~-- 578 (666)
.+++..| ..|||||||.||.+.+|++. + . .|+.+|. +.++..+.++ |+ +-+ ....-.....
T Consensus 233 ~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~-----~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 233 WLAPQNE--ETILDACAAPGGKTTHILELAPQA-----QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HhCCCCC--CeEEEeCCCccHHHHHHHHHcCCC-----eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 4455555 46999999999999999875 2 2 3555563 4555554333 54 111 1111010111
Q ss_pred CCCccceEEec------cccccCCC---C---CC-------HHHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHH
Q 005981 579 YPRTYDLLHAA------GLFSVESK---R---CN-------MSTIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGK 635 (666)
Q Consensus 579 yp~tyDliha~------~~f~~~~~---~---c~-------~~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~ 635 (666)
-..+||.|.++ |++....+ + -+ -..+|.++-|+|||||+++++ ...+.-..|+.+++
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 13789999864 23322111 0 00 137999999999999999997 33344445555555
Q ss_pred h
Q 005981 636 A 636 (666)
Q Consensus 636 ~ 636 (666)
+
T Consensus 386 ~ 386 (426)
T TIGR00563 386 E 386 (426)
T ss_pred h
Confidence 4
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.002 Score=67.69 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=60.1
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-----c-----ccccccccC-CCCCCCCCccceE
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-----G-----LIGVMHDWC-EPFDTYPRTYDLL 586 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-----G-----lig~~~~~c-e~~~~yp~tyDli 586 (666)
-++||++|||.|+++..+++.+ + +.+|+-++. ++.++.+.+. | -+.+.+.-. +-....+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~--~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-S--VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-C--cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 4589999999999999998874 1 234444543 4555555442 1 011222111 1111235799999
Q ss_pred EeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE
Q 005981 587 HAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 587 ha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~ 621 (666)
-++.... ...... ....+..+.|+|+|||.+++.
T Consensus 150 i~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 8864321 111111 357888999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=72.07 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=61.9
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-CC-CC--------------C
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP-YP--------------S 336 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~-Lp-f~--------------d 336 (666)
.+|||++||+|.++..|+.. +|+++|+++.++..++. .+...++.. .+...|+.+ ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988875 89999999999987764 455555543 344444332 11 10 1
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
..||+|+.---.- .-...+++.+. ++++.++++..|
T Consensus 287 ~~~D~v~lDPPR~---G~~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPRA---GLDDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCCC---CCcHHHHHHHH---ccCCEEEEEeCH
Confidence 2589998543211 11234444444 378999998653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=71.60 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=60.6
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC-C-------C---C-----C
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL-P-------Y---P-----S 336 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L-p-------f---~-----d 336 (666)
.+|||+|||+|.++..|+.. .|+|+|+++.++..++. .+...++.. .+...++.++ + + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 36999999999999988875 89999999999987764 445555543 3344443321 1 1 0 1
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..||+|+.---.- .-...++..+ ++|++.++++..
T Consensus 278 ~~~d~v~lDPPR~---G~~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 278 YNCSTIFVDPPRA---GLDPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred CCCCEEEECCCCC---CCcHHHHHHH---HcCCcEEEEEcC
Confidence 2379988533211 1112444444 348999999864
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00085 Score=68.87 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=80.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-----CCChhHHHhccc--cccccccCCC-CCCC-C-CccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-----FNTLPVIYDRGL--IGVMHDWCEP-FDTY-P-RTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-----~~~l~~~~erGl--ig~~~~~ce~-~~~y-p-~tyDliha~~ 590 (666)
.+|+||||.|.|-.+|+++.=++ |++.++- ...+..+.+.|| +.++...++. +..+ | ++.|-|+-.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~---nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~- 126 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK---NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN- 126 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC---CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE-
Confidence 59999999999999999983222 5555542 466788888899 7777554444 3333 3 499999865
Q ss_pred cccc-------CCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHH-HHHHHHh---cCcEEE
Q 005981 591 LFSV-------ESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDE-LQEIGKA---MGWHVT 642 (666)
Q Consensus 591 ~f~~-------~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~-~~~i~~~---l~W~~~ 642 (666)
|.. .+.|=--+..|.++.|+|+|||.+.+. |..+..+. +++.+.. +.+...
T Consensus 127 -FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~ 189 (227)
T COG0220 127 -FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESE 189 (227)
T ss_pred -CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhcccc
Confidence 653 233322358999999999999999995 77666555 6665544 444433
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=63.69 Aligned_cols=117 Identities=22% Similarity=0.347 Sum_probs=74.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCCh----hHHHhccc---cccc-cccCCCCCCCCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL----PVIYDRGL---IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l----~~~~erGl---ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
+|||+|||-|.+-..|++.|.. --++.+| ++..+ .+|..+|+ |... .|.-.+ ...+..||+||--+-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 7999999999999999999752 1155665 33333 33444566 3333 222211 123588999996554
Q ss_pred c---ccCCCC--CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEE
Q 005981 592 F---SVESKR--CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 592 f---~~~~~~--c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~ 641 (666)
+ +...+. -.+.-.+--++++|+|||.|+|+.-.-..++|.+....-..+.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEE
Confidence 4 333211 1224567778999999999999977666666666665554443
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00084 Score=68.64 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=71.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc------cccccccCCCCCCCC---CccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYP---RTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl------ig~~~~~ce~~~~yp---~tyDliha~~ 590 (666)
.||.+|||.|.---=|++..-+ =-+-|..-| +++.+.+.-++-- -...+|.+.+-...| .+.|+|.+--
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n-~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN-NRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCC-CCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 7999999999977777766322 001233333 3455555544322 445566665543333 9999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~ 625 (666)
+||..+. -.+..+|..+.|+|||||.+++||.-.
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 9998764 367899999999999999999998643
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=65.81 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEe
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAA 326 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~ 326 (666)
++..+..-+.+...|... .-.+.++||+-||+|.++...+.+ .|+.||.++..+...+.+ ...-+... .+..
T Consensus 22 RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N-~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKN-LEKLGLEDKIRVIK 98 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHH-HHHHT-GGGEEEEE
T ss_pred CCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHH-HHHhCCCcceeeec
Confidence 455666677777777643 023479999999999999987776 899999999776655443 33334332 2333
Q ss_pred ec-ccCCC---CCCCCeeEEEecccccccccC-hHHHHHHHH--HhccCCeEEEEEEC
Q 005981 327 FA-TRRLP---YPSQAFDLIHCSRCRINWTRD-DGILLLEVN--RMLRAGGYFAWAAQ 377 (666)
Q Consensus 327 ~d-~e~Lp---f~d~sFDlVv~s~~l~h~~~d-~~~~L~el~--RvLkPGG~lv~st~ 377 (666)
.| ...+. .....||+|++--- ... .. ...++..+. .+|+++|.+++-..
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPP-Y~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPP-YAK-GLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--S-TTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECCC-ccc-chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33 22221 24688999996533 222 12 256677766 79999999988753
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=72.40 Aligned_cols=100 Identities=20% Similarity=0.330 Sum_probs=79.4
Q ss_pred eEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
++|-+|||.-.+...+.+. .|+.+|+|+..++..+...++++ ....+...++..+.|++++||+|+.-..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999988888765 89999999988876665555332 2234555678899999999999998888777765
Q ss_pred ChH---------HHHHHHHHhccCCeEEEEEEC
Q 005981 354 DDG---------ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d~~---------~~L~el~RvLkPGG~lv~st~ 377 (666)
+.. ..+.++.|+|++||.++..+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 543 456899999999999877765
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0013 Score=74.01 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=71.1
Q ss_pred hhhhhhhhHhHH---HHHHHHHHhcccCCC----ceeeEeeccccchHHHHHHhhCCCc-eEEEEeeccCC-CC---Ch-
Q 005981 491 KELFKAESKYWN---EIIESYVRALHWKKM----KLRNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSG-FN---TL- 557 (666)
Q Consensus 491 ~~~f~~d~~~w~---~~v~~Y~~~l~~~~~----~iRnvlD~g~G~Ggfaa~L~~~~~~-vwvmnv~~~~~-~~---~l- 557 (666)
.+.|+.|.-+.. +.|....+-. .... +-..|||+|||.|-....-++-+.. .-...|..++. ++ ++
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~~al~D~-~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIEEALKDR-VRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHHHHHHHH-HTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred HhhHhcCHHHHHHHHHHHHHHHHhh-hhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 388888876654 3332222211 1222 1346999999999986433222100 00113445553 22 22
Q ss_pred hHHHhccc---cccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 558 PVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 558 ~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
..+.+.|+ |.++|+--|.+.. |.-.|+|-+- ++....+...+...|.-.||.|+|||.+|=
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred HHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 22244454 8888888777664 7899999974 444444555778899999999999998763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0078 Score=64.91 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=73.9
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--------CeEEEeCCcchHHHHHHHHHHHcCCCc-eE--Ee
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPA-MV--AA 326 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~--~~ 326 (666)
..+.|++.++ ....++|+|||+|.=+..|++. .++++|+|...+..+..+..... .+. .+ ..
T Consensus 66 ~~~~Ia~~i~------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p~l~v~~l~ 138 (319)
T TIGR03439 66 HSSDIAASIP------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FSHVRCAGLL 138 (319)
T ss_pred HHHHHHHhcC------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CCCeEEEEEE
Confidence 4455555554 3358999999999655444332 68999999999988776665222 222 11 12
Q ss_pred ecc----cCCCC--CCCCeeEEEecccccccccCh--HHHHHHHHH-hccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 327 FAT----RRLPY--PSQAFDLIHCSRCRINWTRDD--GILLLEVNR-MLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 327 ~d~----e~Lpf--~d~sFDlVv~s~~l~h~~~d~--~~~L~el~R-vLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
++. ..++- ......+++.....+.-.+.. ..+|+++++ .|+|||.|++..- .......+..+|
T Consensus 139 gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D-~~k~~~~l~~AY 210 (319)
T TIGR03439 139 GTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD-GCKDPDKVLRAY 210 (319)
T ss_pred ecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC-CCCCHHHHHHHh
Confidence 222 22321 123457776554333332333 388999999 9999999998742 223334444555
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0061 Score=59.76 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=61.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeec---
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFA--- 328 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d--- 328 (666)
.+.++.+...-+. .+...+|||+||++|.|+..+.++ .|+|+|+.+.... .....+. .......
T Consensus 8 KL~ei~~~~~~~~-~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 8 KLYEIDEKFKIFK-PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QNVSFIQGDITNPENIKD 80 (181)
T ss_dssp HHHHHHHTTSSS--TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEBTTGGGEEEEHSHH
T ss_pred HHHHHHHHCCCCC-cccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cceeeeecccchhhHHHh
Confidence 3455555554221 124589999999999999999876 7999999875110 0000010 0111111
Q ss_pred ccC-CCCCCCCeeEEEeccccccccc----ChH-------HHHHHHHHhccCCeEEEEEECCC
Q 005981 329 TRR-LPYPSQAFDLIHCSRCRINWTR----DDG-------ILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 329 ~e~-Lpf~d~sFDlVv~s~~l~h~~~----d~~-------~~L~el~RvLkPGG~lv~st~P~ 379 (666)
+.. ++-..+.||+|+|-.+ ..... +.. ..+.-+.+.|++||.+++..+..
T Consensus 81 i~~~~~~~~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp GGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred hhhhccccccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 111 1112268999997542 22221 111 34445567899999999987643
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0024 Score=71.55 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=80.5
Q ss_pred ccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEE
Q 005981 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVA 325 (666)
Q Consensus 249 t~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~ 325 (666)
..|.+......+.|.+...+........++||+=||.|.|+..|+++ +|+|+++++.++..|+ +.|+.+++.+ .+.
T Consensus 268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~ 346 (432)
T COG2265 268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFI 346 (432)
T ss_pred CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEE
Confidence 35655554545555444443332345578999999999999999977 9999999999998776 5666677664 455
Q ss_pred eecccCCCC---CCCCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEEC
Q 005981 326 AFATRRLPY---PSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 326 ~~d~e~Lpf---~d~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st~ 377 (666)
..+++++.. ....+|.|+..--. .-.+ .+++.+ ..++|-..+++|..
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPPR----~G~~~~~lk~l-~~~~p~~IvYVSCN 397 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPPR----AGADREVLKQL-AKLKPKRIVYVSCN 397 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCCC----CCCCHHHHHHH-HhcCCCcEEEEeCC
Confidence 555555542 23578999842211 1112 444444 45678889999964
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=67.50 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=65.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEE--eecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA--AFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~--~~d~e~L 332 (666)
|...+++.-.+ -..+.|||+|||+|.++...+.. +|++++.|. |...|+. ....+.+...+. .+-++++
T Consensus 165 Y~~Ail~N~sD----F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~-Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 165 YQRAILENHSD----FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK-LVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred HHHHHHhcccc----cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH-HHhcCCccceEEEccCccccc
Confidence 34444444433 34578999999999766544433 999999876 5544443 223333333222 2346777
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~s 375 (666)
.+| +..|+|++--+..-+..+. -...--.+|.|+|.|.++=+
T Consensus 239 eLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 239 ELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred cCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 766 6799999654322221211 12233356999999998543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0048 Score=66.22 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=60.8
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc------cc----cccccccCCC-CCCC-CCccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL----IGVMHDWCEP-FDTY-PRTYD 584 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er------Gl----ig~~~~~ce~-~~~y-p~tyD 584 (666)
.+-++|||+|||.|+.++++++.+ +|.-+-++.+| +..++++.+. |+ +.+.++-+-. .... .+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 346789999999999999999874 22323333433 2344444332 22 3333332211 1223 37899
Q ss_pred eEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE
Q 005981 585 LLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 585 liha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|-++. +........ -..++..+.|.|+|||.+++.
T Consensus 168 vIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999853 322211110 147889999999999999873
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00061 Score=69.26 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC---CceEEeecccCC--CCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAFATRRL--PYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~---~~~~~~~d~e~L--pf~d~sFDlVv~ 344 (666)
+.+.+|||...|-|..+..-.++ .|+.++-++.-+..|.++- ..+++ ...+...|+.++ .|+|.+||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEee
Confidence 35689999999999998887776 7899998887654332211 11121 112333343222 277899999984
Q ss_pred cccccccccC--hHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRD--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st 376 (666)
---.+..... ...+.+|++|+|||||.++-.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 3222222121 2478899999999999987664
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0019 Score=66.43 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=66.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-------cc--cccccccCCCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-------GL--IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-------Gl--ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
.+|||+|||+|+|+..|+++|+ -.|+.+|. ++++...+.. +. |. +.+|-+-...+ -++|+.-++
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga----~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~-~~~DvsfiS 150 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA----KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDF-ATFDVSFIS 150 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC----CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCc-eeeeEEEee
Confidence 4699999999999999999965 24666664 4466542222 11 22 12342221112 256655554
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE-------------------eCh---hHHHHHHHHHHhcCcEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DSI---DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-------------------d~~---~~~~~~~~i~~~l~W~~~~~ 644 (666)
. ..+|-.|.+.|+| |.+|+= |.. .+++++...+..+.|++.-.
T Consensus 151 --------~---~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 --------L---ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred --------h---HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 2 3578889999999 777762 322 24566666778888987543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0055 Score=67.68 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=74.1
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEeec-ccCCC---CCCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA---MVAAFA-TRRLP---YPSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~d-~e~Lp---f~d~sFDlVv~ 344 (666)
+++|||+-|=||.++.+.+.. +|++||+|...+..++.+.. .+|+.. .+...| .+-+. -....||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 489999999999888777653 99999999999988875544 455432 344444 22222 22458999996
Q ss_pred ccccc--------ccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHH
Q 005981 345 SRCRI--------NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385 (666)
Q Consensus 345 s~~l~--------h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~e 385 (666)
---.+ ....+...++..+.++|+|||.+++++-...-....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH
Confidence 32211 111233478889999999999999997433344343
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0057 Score=63.72 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=88.6
Q ss_pred hhhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHh-------cccc
Q 005981 496 AESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYD-------RGLI 566 (666)
Q Consensus 496 ~d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~e-------rGli 566 (666)
-+|+-|.+.|-.-.+...+..+. .+||+|||.|..+-.|+.. .+.|....+. +..+..|.| .|-|
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~--~ildlgtGSGaIslsll~~L~~~~v~AiD~S----~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHT--HILDLGTGSGAISLSLLHGLPQCTVTAIDVS----KAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccc--eEEEecCCccHHHHHHHhcCCCceEEEEecc----HHHHHHHHHHHHHHhhcCce
Confidence 45777887776443333333333 5999999999999988765 3323333333 333333333 3558
Q ss_pred ccccccC--CCCCCCC---CccceEEeccc--cccC-------------------CCCCC--HHHHHHHhhhcccCCeEE
Q 005981 567 GVMHDWC--EPFDTYP---RTYDLLHAAGL--FSVE-------------------SKRCN--MSTIMLEMDRMLRPGGHV 618 (666)
Q Consensus 567 g~~~~~c--e~~~~yp---~tyDliha~~~--f~~~-------------------~~~c~--~~~~l~E~dRiLRPgG~~ 618 (666)
++.|..- +.+.++| ..+|+|.|+-= ++.. +..|. +..+..=.-|.|+|||.+
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 8887633 3366776 89999988632 2110 11111 113444455999999999
Q ss_pred EEEe-----ChhHHHH-HHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 619 YIRD-----SIDVMDE-LQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 619 ii~d-----~~~~~~~-~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
++.= ....... ++...+---|.+.+...-. +.+++++..+
T Consensus 282 ~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~---~~~Rfv~i~r 327 (328)
T KOG2904|consen 282 QLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFA---GRPRFVIIHR 327 (328)
T ss_pred EEEecccccCcHHHHHHHHhchhhccchhheeeccc---CCcceEEEEe
Confidence 9962 2222332 3333444456665554322 4677776654
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=65.65 Aligned_cols=132 Identities=21% Similarity=0.307 Sum_probs=87.3
Q ss_pred eeEeeccccchHHHHHHhhCCC-ceEEEEeeccCCCCChhHH----Hhccc----cccccccC-CCCCCCC-Cccce-EE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKF-DCWVMNVVPVSGFNTLPVI----YDRGL----IGVMHDWC-EPFDTYP-RTYDL-LH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~-~vwvmnv~~~~~~~~l~~~----~erGl----ig~~~~~c-e~~~~yp-~tyDl-ih 587 (666)
-+|||.=.|.|-+|..-+++|+ -|.+..+- +|-|+.| +.|+| |-+.+.-| |...+++ .+||. ||
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkd----p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKD----PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeC----CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 4599999999999999999997 34333222 3444433 34555 45555544 4467787 77995 46
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEE--------eChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEE
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--------DSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 659 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~--------d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~ 659 (666)
=--=||+.+.--+ +.+-.|+.|||||||.++=- --.+....+.+-+.+....+.....+.+ -++|
T Consensus 212 DPPRfS~AgeLYs-eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~------gv~A 284 (287)
T COG2521 212 DPPRFSLAGELYS-EEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREAL------GVVA 284 (287)
T ss_pred CCCccchhhhHhH-HHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhcc------ceEE
Confidence 4444666552211 57889999999999998763 2245677788888888998665554432 3666
Q ss_pred EeC
Q 005981 660 DKR 662 (666)
Q Consensus 660 ~k~ 662 (666)
+|+
T Consensus 285 ~k~ 287 (287)
T COG2521 285 VKP 287 (287)
T ss_pred ecC
Confidence 663
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.002 Score=68.47 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=77.5
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHH-----hccc---cccc-cccCCCCCCCCCccce
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIY-----DRGL---IGVM-HDWCEPFDTYPRTYDL 585 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~-----erGl---ig~~-~~~ce~~~~yp~tyDl 585 (666)
.-+.|+|+|||-|++.+.+... .-+. -++.+|. +.+++.|. +.|+ +.+. +|..+... ....||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~---~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT---SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCE
Confidence 4577999999988876554431 1111 2444442 23333322 2455 3332 33333111 1268999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---hHHHH-HHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---DVMDE-LQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---~~~~~-~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
|-+. ++-.. ++-+-..+|..+.|.|||||+++++-.. ..+-. +..-.-+ +|++...-+-.++ .-.-+++++|
T Consensus 199 VF~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~-gf~~~~~~~P~~~-v~Nsvi~~r~ 274 (296)
T PLN03075 199 VFLA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR-GFEVLSVFHPTDE-VINSVIIARK 274 (296)
T ss_pred EEEe-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC-CeEEEEEECCCCC-ceeeEEEEEe
Confidence 9998 43332 2234479999999999999999998421 11111 1111111 8998777654432 3456888888
Q ss_pred C
Q 005981 662 R 662 (666)
Q Consensus 662 ~ 662 (666)
.
T Consensus 275 ~ 275 (296)
T PLN03075 275 P 275 (296)
T ss_pred e
Confidence 5
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0015 Score=62.00 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=53.1
Q ss_pred CCCCeEEEECCCCchhHHH--hccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAY--LLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~--L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
-.+.+++|+|||.|-+... +.+. .|+|+|+.+..+.... +.+.+-.+...+...++..+-+..+.||.++.+.-
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 3458899999999966532 2333 8999999998876554 45555555555666677777777799999996543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0018 Score=69.02 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----------CCeEEEeCCcchHHHHHHHHHHHcCCCc--
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------RNVITMSIAPKDVHENQIQFALERGAPA-- 322 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----------~~V~gvDiS~~~l~~a~~~~a~~rg~~~-- 322 (666)
..+.+.+.+++.. ....+|||.+||+|.|.....+ .+++|+|+++..+..++.+... ++...
T Consensus 32 ~~i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~ 106 (311)
T PF02384_consen 32 REIVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSN 106 (311)
T ss_dssp HHHHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBG
T ss_pred HHHHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccc
Confidence 3455556666532 3456899999999988766543 2899999999877666655443 23211
Q ss_pred -eEEeecc-cCCCCC-CCCeeEEEeccccccc--c-----cC------------h-HHHHHHHHHhccCCeEEEEEEC
Q 005981 323 -MVAAFAT-RRLPYP-SQAFDLIHCSRCRINW--T-----RD------------D-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 323 -~~~~~d~-e~Lpf~-d~sFDlVv~s~~l~h~--~-----~d------------~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...+. ...... ...||+|+++--+-.. . .+ . -.++..+.+.|++||.+++..+
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 1333332 222222 4789999986433222 0 00 1 1577889999999999888754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0029 Score=64.99 Aligned_cols=92 Identities=9% Similarity=0.073 Sum_probs=63.4
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh-----------------ccc-cccccccCCCCCCCC--
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----------------RGL-IGVMHDWCEPFDTYP-- 580 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e-----------------rGl-ig~~~~~ce~~~~yp-- 580 (666)
.||+.|||-|-=+.+|+++|++|..+-+++.. ++.+++ +|. |.++. -.|-.++
T Consensus 46 rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~A----i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~---gD~f~l~~~ 118 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSKGVKVIGIELSEKA----VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV---ADIFNLPKI 118 (226)
T ss_pred eEEEeCCCChHHHHHHHhCCCcEEEEecCHHH----HHHHHHHcCCCcceecccccceeccCceEEEE---ccCcCCCcc
Confidence 69999999999999999999966665555542 222211 222 33332 2222332
Q ss_pred ----CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 581 ----RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 581 ----~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
..||+|.=...|.+... -.-.....-|.++|||||.+++
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 47999998878877643 1236899999999999999877
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.01 Score=59.07 Aligned_cols=132 Identities=20% Similarity=0.142 Sum_probs=81.4
Q ss_pred cccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHH
Q 005981 240 DKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL 316 (666)
Q Consensus 240 ~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~ 316 (666)
..+.+|.+ ...++..+..-+.+...+... .-.+.++||+=+|+|.++..-+.+ .++.||.+.......+.+ ..
T Consensus 12 r~L~~p~~-~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N-~~ 87 (187)
T COG0742 12 RKLKTPDG-PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN-LK 87 (187)
T ss_pred CcccCCCC-CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH-HH
Confidence 34445543 333566777788888888741 124589999999999999988877 899999998766555543 33
Q ss_pred HcC--CCceEEeeccc-CCCCCCC--CeeEEEecccccccccCh--HHHHHH--HHHhccCCeEEEEEEC
Q 005981 317 ERG--APAMVAAFATR-RLPYPSQ--AFDLIHCSRCRINWTRDD--GILLLE--VNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 317 ~rg--~~~~~~~~d~e-~Lpf~d~--sFDlVv~s~~l~h~~~d~--~~~L~e--l~RvLkPGG~lv~st~ 377 (666)
..+ ....+...|+. -|+-... .||+|+.--- .+. .-. ...+.. -...|+|+|.+++-..
T Consensus 88 ~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 88 ALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-Ccc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 333 22333333333 2222222 4999996433 332 112 222333 4578999999999753
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0079 Score=59.87 Aligned_cols=136 Identities=21% Similarity=0.362 Sum_probs=86.1
Q ss_pred hhhHhHHHHHHHHHHhccc-CCCceeeEeeccccchHHHHHH--hhCCCceEEEEeeccCC----CCCh-hHHHhccc--
Q 005981 496 AESKYWNEIIESYVRALHW-KKMKLRNVLDMRAGFGGFAAAL--IEQKFDCWVMNVVPVSG----FNTL-PVIYDRGL-- 565 (666)
Q Consensus 496 ~d~~~w~~~v~~Y~~~l~~-~~~~iRnvlD~g~G~Ggfaa~L--~~~~~~vwvmnv~~~~~----~~~l-~~~~erGl-- 565 (666)
...+.|.+++-+=...+.. ..... +++|+|+|-|-=|--| +.... +|+-+|+ -+-| .++.+=||
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~-----~~~LvEs~~KK~~FL~~~~~~L~L~n 99 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDL-----QVTLVESVGKKVAFLKEVVRELGLSN 99 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTS-----EEEEEESSHHHHHHHHHHHHHHT-SS
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCC-----cEEEEeCCchHHHHHHHHHHHhCCCC
Confidence 3446777777544444442 22211 5999999988533333 22222 3444443 2334 34444477
Q ss_pred cccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE---eChhHHHHHHHHHHhcCcEEE
Q 005981 566 IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---DSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 566 ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~---d~~~~~~~~~~i~~~l~W~~~ 642 (666)
+-++|...|. ..++..||+|-|.. -+.+..++.-+-+.|+|||.+++- +..+.+...+...+.+.++..
T Consensus 100 v~v~~~R~E~-~~~~~~fd~v~aRA-------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 100 VEVINGRAEE-PEYRESFDVVTARA-------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EEEEES-HHH-TTTTT-EEEEEEES-------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEEEEeeecc-cccCCCccEEEeeh-------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 7788999888 55779999999973 456778888889999999999985 455667778888888888876
Q ss_pred EEe
Q 005981 643 LRE 645 (666)
Q Consensus 643 ~~~ 645 (666)
...
T Consensus 172 ~v~ 174 (184)
T PF02527_consen 172 SVP 174 (184)
T ss_dssp EEE
T ss_pred eec
Confidence 543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0019 Score=67.99 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=64.2
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCC--CCccceEEecccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTY--PRTYDLLHAAGLFSV 594 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~y--p~tyDliha~~~f~~ 594 (666)
.|||+|||.|.++..++++ +. +|+.+|. +.+++.+.++-- +.+.+.- +..+ .++||+|-++--|.+
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~-----~V~gVDisp~al~~Ar~n~~~v~~v~~D---~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPE-----KIVCVELNPEFARIGKRLLPEAEWITSD---VFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHhCcCCEEEECc---hhhhcccCCCcEEEEcCCccc
Confidence 6999999999999988775 23 5666663 678887766511 3333322 2233 378999999877765
Q ss_pred CCC-------C---------C-CHHHHHHHhhhcccCCeEEEEE
Q 005981 595 ESK-------R---------C-NMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 595 ~~~-------~---------c-~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
... + | .+...+...-++|+|+|.+++.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 211 1 1 1467888999999999988885
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0037 Score=71.79 Aligned_cols=122 Identities=14% Similarity=0.074 Sum_probs=73.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc-------------ccccccccCCC-CCCCCCc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG-------------LIGVMHDWCEP-FDTYPRT 582 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG-------------lig~~~~~ce~-~~~yp~t 582 (666)
+-++|||+|||.|+.+..+++.+. | ..|+-+|- +.+++.+.+.- -+.+.++.... ....++.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v--~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-V--EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-c--CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 456799999999999999988741 1 23444442 56777776521 12233332222 2234689
Q ss_pred cceEEeccccccCCCCC-C-HHHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEE
Q 005981 583 YDLLHAAGLFSVESKRC-N-MSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 583 yDliha~~~f~~~~~~c-~-~~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~ 642 (666)
||+|-++.-........ . -++++.++.|.|||||.+++.. ..+....+.+.+++.+..+.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 99999872211100000 0 1367889999999999999952 24445566666666655443
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0081 Score=63.78 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC-CC-C-CCCCeeEEEec
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LP-Y-PSQAFDLIHCS 345 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~-Lp-f-~d~sFDlVv~s 345 (666)
+++|||+=|=||.|+.+.+.. +|+.||.|...+..++.+.+. +++. ..+...|+-. +. . ..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 379999999999998875543 799999999999888765544 4443 1233334211 11 1 24689999974
Q ss_pred cccc-----ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRI-----NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~-----h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
--.+ ....+...++..+.++|+|||.+++.+.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2221 1112334788889999999999988764
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0044 Score=64.72 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=59.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..++.+.+...- .+...|||||+|.|.++..|+++ .|+++++++.++...+...+ ......+...|+....+
T Consensus 17 ~v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 17 NVIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcc
Confidence 346677766652 23579999999999999999988 89999999976654433222 11223455556666666
Q ss_pred CCC-CeeEEEeccccccc
Q 005981 335 PSQ-AFDLIHCSRCRINW 351 (666)
Q Consensus 335 ~d~-sFDlVv~s~~l~h~ 351 (666)
+.- .++.|+++.- .++
T Consensus 91 ~~l~~~~~vVaNlP-Y~I 107 (259)
T COG0030 91 PSLAQPYKVVANLP-YNI 107 (259)
T ss_pred hhhcCCCEEEEcCC-Ccc
Confidence 643 6788886532 444
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0065 Score=68.04 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=70.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCC---CCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTY---PRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~y---p~tyDliha~ 589 (666)
.|||+|||+|.++..|++... .|+.+|. +.+++.+.+ .|+ +.+++.-++. ++.+ ..+||+|-.+
T Consensus 295 ~vLDl~cG~G~~sl~la~~~~-----~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQAK-----SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhCC-----EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 599999999999999998754 4555653 455555443 344 4455444433 2222 2579998865
Q ss_pred cccccCCCCCC-HHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 590 GLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 590 ~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..|-. ...++.++.+ |+|+|.++++-+...+.+--+.+..-.|++..
T Consensus 370 ------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 370 ------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred ------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEE
Confidence 11222 2566666665 89999999996666654444445555677653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0039 Score=65.92 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=77.9
Q ss_pred ceeeEeeccccchHHHHHHhh----CCCceEEEEeeccCCCCChhHHHhccc---ccccccc-CCCCCCC-----CCccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDW-CEPFDTY-----PRTYD 584 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~-ce~~~~y-----p~tyD 584 (666)
+-++||++|+++|..+.+|+. .|. |+++-.-+....-..+.+.+.|+ |-+.++- .|.++.+ ..+||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 356899999999999998876 232 33322222111222233344566 3333332 1212222 35899
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC------------hhHHHHHHH----HHHhcCcEEEEEeccC
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------IDVMDELQE----IGKAMGWHVTLRETAE 648 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~------------~~~~~~~~~----i~~~l~W~~~~~~~~~ 648 (666)
+|-.+. ++-....++...-+.|||||.+|+.+- ......|++ +.+.=+++..+.-..+
T Consensus 197 ~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigD 270 (278)
T PLN02476 197 FAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGD 270 (278)
T ss_pred EEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCC
Confidence 998772 233467888888999999999998521 011123333 4555568887776654
Q ss_pred CCCCceEEEEEEeC
Q 005981 649 GPHASYRILTADKR 662 (666)
Q Consensus 649 ~~~~~e~~l~~~k~ 662 (666)
.+++++|+
T Consensus 271 ------Gl~i~~K~ 278 (278)
T PLN02476 271 ------GMTICRKR 278 (278)
T ss_pred ------eeEEEEEC
Confidence 48888884
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0065 Score=61.26 Aligned_cols=133 Identities=20% Similarity=0.378 Sum_probs=88.6
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCCC-CCh----hHHHhccc--------cccccc-c--CCCCCCCCCcc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGF-NTL----PVIYDRGL--------IGVMHD-W--CEPFDTYPRTY 583 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~-~~l----~~~~erGl--------ig~~~~-~--ce~~~~yp~ty 583 (666)
.||.+|||+|--|++++.. +- +.--|.|.. +.+ ..+.+.|+ +-+..+ | ..+-..++.+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~----l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH----LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC----CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 7999999999988888876 32 134455532 222 33446676 333333 2 11122356899
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE------------------------eC---hhHHHHHHHHHHh
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR------------------------DS---IDVMDELQEIGKA 636 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~------------------------d~---~~~~~~~~~i~~~ 636 (666)
|.|.|..++......| .+-++.+..|+|+|||.+++- |. ..-++.|.+++.+
T Consensus 104 D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 104 DAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred ceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 9999998887766554 489999999999999999994 11 1126788889998
Q ss_pred cCcEEEEEeccCCCCCceEEEEEEe
Q 005981 637 MGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 637 l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
-+.+..... + .-...++||.+|
T Consensus 183 ~GL~l~~~~--~-MPANN~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDI--D-MPANNLLLVFRK 204 (204)
T ss_pred CCCccCccc--c-cCCCCeEEEEeC
Confidence 888754221 1 224568888876
|
The function of this family is unknown. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0066 Score=53.55 Aligned_cols=94 Identities=26% Similarity=0.336 Sum_probs=55.2
Q ss_pred EeeccccchH--HHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c--cccc-cccCCCCCCCC--CccceEEec
Q 005981 522 VLDMRAGFGG--FAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L--IGVM-HDWCEPFDTYP--RTYDLLHAA 589 (666)
Q Consensus 522 vlD~g~G~Gg--faa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l--ig~~-~~~ce~~~~yp--~tyDliha~ 589 (666)
++|+|||.|. +.+.+...++ .+ +.++. ..++.....+. + +... .+.......+. .+||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~--~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA--YV---VGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc--eE---EEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 4555554432 22 22442 23344333322 1 1222 33322112233 389999 66
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
....+... ...++.++.|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 44433332 679999999999999999998554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=58.97 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=79.8
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHH-Hhccc------ccccc--------c
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI-YDRGL------IGVMH--------D 571 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~-~erGl------ig~~~--------~ 571 (666)
.|+..++...+ ..||+-|||.|--+.+|+++|++|..+-+++ ..++.+ .++++ ++.+. =
T Consensus 28 ~~~~~l~~~~~--~rvLvPgCG~g~D~~~La~~G~~VvGvDls~----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 28 EYLDSLALKPG--GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHTTSTS--EEEEETTTTTSCHHHHHHHTTEEEEEEES-H----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHhcCCCCC--CeEEEeCCCChHHHHHHHHCCCeEEEEecCH----HHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 44444443332 3499999999999999999998444444433 344444 34454 11111 1
Q ss_pred cCCCCCCCC----CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEE-EE-eCh----------hHHHHHHHHHH
Q 005981 572 WCEPFDTYP----RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY-IR-DSI----------DVMDELQEIGK 635 (666)
Q Consensus 572 ~ce~~~~yp----~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i-i~-d~~----------~~~~~~~~i~~ 635 (666)
+|-.|-.++ ..||+|+=...|.... ...-+....-|.++|||||.++ ++ +.. -..++|++++.
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~ 180 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG 180 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT
T ss_pred EEcccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc
Confidence 222333333 4699999776666554 2344799999999999999943 33 111 12577888888
Q ss_pred hcCcEEEEEe
Q 005981 636 AMGWHVTLRE 645 (666)
Q Consensus 636 ~l~W~~~~~~ 645 (666)
-+|++....
T Consensus 181 -~~f~i~~l~ 189 (218)
T PF05724_consen 181 -PGFEIEELE 189 (218)
T ss_dssp -TTEEEEEEE
T ss_pred -CCcEEEEEe
Confidence 788876554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=55.04 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=65.5
Q ss_pred eeEeeccccchH-HHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Gg-faa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
+.|+|+|||+|. +|..|.+.|+ .|+.+|. +..++-+.++|+-.+..|+.++-...=+.+|+|.+-
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~-----~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysi-------- 84 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF-----DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSI-------- 84 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC-----EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEe--------
Confidence 469999999996 9999999998 5555663 567888888998777788843322111678898887
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEecc
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA 647 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~ 647 (666)
|+ +.+....+.++++++.=++.++...
T Consensus 85 rp-----------------------p~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 85 RP-----------------------PRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CC-----------------------CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44 3455666777777777777666443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0021 Score=69.60 Aligned_cols=124 Identities=19% Similarity=0.345 Sum_probs=68.2
Q ss_pred HHHHHH--HHHHhcccCCCceeeEeeccccchH-HHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc------------
Q 005981 501 WNEIIE--SYVRALHWKKMKLRNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------------ 564 (666)
Q Consensus 501 w~~~v~--~Y~~~l~~~~~~iRnvlD~g~G~Gg-faa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG------------ 564 (666)
|.+.+- .|.+.+.-. ..-..|||||||=|| ..-+.... +. .++.+| +...++-|.+|=
T Consensus 44 wvKs~LI~~~~~~~~~~-~~~~~VLDl~CGkGGDL~Kw~~~~-i~----~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~ 117 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQN-RPGLTVLDLCCGKGGDLQKWQKAK-IK----HYVGIDISEESIEEARERYKQLKKRNNSKQY 117 (331)
T ss_dssp HHHHHHHHHHCHCCCCT-TTT-EEEEET-TTTTTHHHHHHTT--S----EEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred HHHHHHHHHHHHhhhcc-CCCCeEEEecCCCchhHHHHHhcC-CC----EEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence 654443 554432211 245679999999999 44444333 22 344455 234455555543
Q ss_pred ---c-cccccccCCCCCC-----CC---CccceEEeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEE--eChhHHHH
Q 005981 565 ---L-IGVMHDWCEPFDT-----YP---RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDE 629 (666)
Q Consensus 565 ---l-ig~~~~~ce~~~~-----yp---~tyDliha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~--d~~~~~~~ 629 (666)
. -...+.-| |.. ++ +.||+|=|+-.|... ...-....+|.-+.+.|||||+||.+ |...++.+
T Consensus 118 ~~~f~a~f~~~D~--f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~ 195 (331)
T PF03291_consen 118 RFDFIAEFIAADC--FSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKR 195 (331)
T ss_dssp EECCEEEEEESTT--CCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCC
T ss_pred cccchhheecccc--ccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHH
Confidence 1 11122222 222 32 599999999665542 22333458999999999999999998 65556555
Q ss_pred HHH
Q 005981 630 LQE 632 (666)
Q Consensus 630 ~~~ 632 (666)
+++
T Consensus 196 l~~ 198 (331)
T PF03291_consen 196 LRE 198 (331)
T ss_dssp HHC
T ss_pred HHh
Confidence 655
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=61.47 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=56.7
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC--c--eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--A--MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~--~--~~~~~d~e~ 331 (666)
.++.|.+... -++...|||+|.|||.++..|.+. +|+++++++.|+.+.+.+. .|.+ . .+..+|.-.
T Consensus 46 v~~~I~~ka~----~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 46 VIDQIVEKAD----LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHhccC----CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEeccccc
Confidence 4455554443 256689999999999999999987 9999999999987665433 2333 2 233344444
Q ss_pred CCCCCCCeeEEEeccccccc
Q 005981 332 LPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~ 351 (666)
.++ -.||.++++ .-.++
T Consensus 119 ~d~--P~fd~cVsN-lPyqI 135 (315)
T KOG0820|consen 119 TDL--PRFDGCVSN-LPYQI 135 (315)
T ss_pred CCC--cccceeecc-CCccc
Confidence 433 479999964 33555
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0056 Score=59.54 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=60.7
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----ccccccccCCCCCCCC-Cccc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYD 584 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----lig~~~~~ce~~~~yp-~tyD 584 (666)
.+++..+ ..|||+|||.|.++..|++++. .|+.+|. +.+++.+.++- -+.+++...+.+. ++ ..||
T Consensus 8 ~~~~~~~--~~vLEiG~G~G~lt~~l~~~~~-----~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d 79 (169)
T smart00650 8 AANLRPG--DTVLEIGPGKGALTEELLERAA-----RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPY 79 (169)
T ss_pred hcCCCCc--CEEEEECCCccHHHHHHHhcCC-----eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCC
Confidence 3444443 3699999999999999999865 4555653 45666665542 2445555544443 23 4689
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.|-++--|... ...+..++.+ ..+.++|++++..
T Consensus 80 ~vi~n~Py~~~--~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 80 KVVGNLPYNIS--TPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred EEEECCCcccH--HHHHHHHHhc--CCCcceEEEEEEH
Confidence 98776444321 1122333322 2256999999973
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.003 Score=63.93 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=80.7
Q ss_pred CceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhccc---cccccc-cCCCCCCC-----CCccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHD-WCEPFDTY-----PRTYD 584 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~-~ce~~~~y-----p~tyD 584 (666)
.+-++||.+|+++|--+.+|++. +..|+++.+-|-......+.+...|+ |.+.+. ..|.++.+ +.+||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 35678999999999988888753 23355544444222233344445576 555533 32323322 36899
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------------hHHHHHHHHHHhcCcEEEEEeccC
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETAE 648 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------~~~~~~~~i~~~l~W~~~~~~~~~ 648 (666)
+|-.++ ++-.....+..+-+.|||||.+|+.+.. .+.+-.+.|.+.=+.++.+....+
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigd 197 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGD 197 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTT
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCC
Confidence 998773 2334567777888999999999996321 112233334555567777776654
Q ss_pred CCCCceEEEEEEeC
Q 005981 649 GPHASYRILTADKR 662 (666)
Q Consensus 649 ~~~~~e~~l~~~k~ 662 (666)
.|++++|+
T Consensus 198 ------Gl~l~~K~ 205 (205)
T PF01596_consen 198 ------GLTLARKR 205 (205)
T ss_dssp ------EEEEEEE-
T ss_pred ------eeEEEEEC
Confidence 59999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.015 Score=66.90 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCCeEEEECCCCchhHHHhcc------------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeec-cc-CC---CCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TR-RL---PYPS 336 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d-~e-~L---pf~d 336 (666)
...+|||.|||+|.+...+.. .+++|+|+++..+..+.............+...+ .. .+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 346899999999988766542 2678999998877666554433221111122111 11 01 1112
Q ss_pred CCeeEEEeccccc
Q 005981 337 QAFDLIHCSRCRI 349 (666)
Q Consensus 337 ~sFDlVv~s~~l~ 349 (666)
+.||+|+++--..
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999875433
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=59.42 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=64.9
Q ss_pred CCeEEEECCCCchhHHHh----ccC-CeEEEeCCcchHHHHHHHHHHHcCCCce---EEeecccCCC-----CCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYL----LPR-NVITMSIAPKDVHENQIQFALERGAPAM---VAAFATRRLP-----YPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L----~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~---~~~~d~e~Lp-----f~d~sFDl 341 (666)
+++.||||.=||.-+..+ .+. +|+++|+.+.....+. ++.+..|+... +.....+.|+ .+.++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 478999998888443333 333 9999999987665553 45555554332 1111222222 35689999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++. -+|-.+-..+..++.++||+||.+++.-
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 983 5664444588999999999999998873
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0069 Score=67.24 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=72.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc----cccccc-cCCCCCCC---CCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL----IGVMHD-WCEPFDTY---PRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl----ig~~~~-~ce~~~~y---p~tyDli 586 (666)
++|||+|||+|+|+.+++..|+ -.|+.+|. +.+++.+.+ .|+ +-+++. ..+.+..+ .++||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 4699999999999877665554 14556663 455555443 243 223322 21111122 2589999
Q ss_pred Eecccc-ccCC-----CCCCHHHHHHHhhhcccCCeEEEEEe------ChhHHHHHHHHHHhcCcEEEEE
Q 005981 587 HAAGLF-SVES-----KRCNMSTIMLEMDRMLRPGGHVYIRD------SIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 587 ha~~~f-~~~~-----~~c~~~~~l~E~dRiLRPgG~~ii~d------~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
-++-=+ .... ....+.+++.-.-++|+|||.++..- ..+..+.+.+.+..-+.++++.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 987332 1111 01235566677789999999999842 2345666666677766666654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.04 Score=59.67 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeec-ccCCCCCCCCeeEEEeccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d-~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.++.++|||||++|.|+..|.++ .|++||..+-+ ......+ .......+ ....| +.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~------~~L~~~~-~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA------QSLMDTG-QVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC------HhhhCCC-CEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 45689999999999999999988 89999966521 1111111 12222222 33333 2578999997654
Q ss_pred ccccChHHHHHHHHHhccCC--eEEEEEE-CCCCCCHHHHHHHHH
Q 005981 350 NWTRDDGILLLEVNRMLRAG--GYFAWAA-QPVYKHEEAQEEHWK 391 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPG--G~lv~st-~P~~~~~~el~~~w~ 391 (666)
..+..++.-+.+.|..| ..+++.- .|.-...++.++...
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~ 321 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLE 321 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHH
Confidence 66777777788888776 3555552 344444454444443
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.015 Score=63.00 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=86.6
Q ss_pred ccccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHH
Q 005981 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFA 315 (666)
Q Consensus 239 g~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a 315 (666)
|-.|.+.-...+|..+...--.+++++.. .+.+|||+=+|.|.|+..++.. .|+++|++|..+...+ +.+
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi 231 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENI 231 (341)
T ss_pred CEEEEEchHHeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHH
Confidence 33333333345555554444455666554 3589999999999999888765 5999999998776655 445
Q ss_pred HHcCCCce--EEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 316 LERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 316 ~~rg~~~~--~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+++... ...+|........+.||-|++... .+...++..+.+.|++||.+.+-+.
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred HhcCccceeeEEeccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 55555542 334465666554488999996543 3446788888999999999988754
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.026 Score=57.53 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcccccCCCC-CCeEEEECCCCchhHHHh----ccCCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecc
Q 005981 256 DQYLDQIAKMVPDITWGHH-IRVVMDAGCGVASFGAYL----LPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~-~~~VLDIGCGtG~~a~~L----~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~ 329 (666)
+-+.+.+.+-+.-...... ..+++|||+|.|.=+.-| .+.+|+-+|...+-+.-. .+.+.+-++++ .+....+
T Consensus 48 e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL-~~~~~eL~L~nv~i~~~Ra 126 (215)
T COG0357 48 ELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFL-REVKKELGLENVEIVHGRA 126 (215)
T ss_pred HHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHH-HHHHHHhCCCCeEEehhhH
Confidence 3444555544432211122 579999999999544333 334888888776643222 23445667774 4444446
Q ss_pred cCCCCCCCC-eeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 330 RRLPYPSQA-FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 330 e~Lpf~d~s-FDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
|.+.-. .. ||+|+|-.+ .+...++.-+...||+||.+++.
T Consensus 127 E~~~~~-~~~~D~vtsRAv-----a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 127 EEFGQE-KKQYDVVTSRAV-----ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred hhcccc-cccCcEEEeehc-----cchHHHHHHHHHhcccCCcchhh
Confidence 665422 22 999985443 45567777789999999987543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0036 Score=63.55 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=55.3
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT 578 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~ 578 (666)
...+.+.++.|. .|||+|||+|-++|.|+.. |- +- -|+.++. +...+.|.++ |+ +.+.+.-+ ...
T Consensus 63 ~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~-~g--~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg--~~g 135 (209)
T PF01135_consen 63 RMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGP-VG--RVVSVERDPELAERARRNLARLGIDNVEVVVGDG--SEG 135 (209)
T ss_dssp HHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHST-TE--EEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G--GGT
T ss_pred HHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCc-cc--eEEEECccHHHHHHHHHHHHHhccCceeEEEcch--hhc
Confidence 345566677664 5999999999999988876 31 11 1334443 2223333222 44 44554443 233
Q ss_pred CC--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 579 YP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 579 yp--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+| ..||.||+.... +.+-.++-+-||+||.+|+-
T Consensus 136 ~~~~apfD~I~v~~a~---------~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAV---------PEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp TGGG-SEEEEEESSBB---------SS--HHHHHTEEEEEEEEEE
T ss_pred cccCCCcCEEEEeecc---------chHHHHHHHhcCCCcEEEEE
Confidence 44 679999987322 23334444569999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0072 Score=66.59 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC-CCCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL-PYPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L-pf~d~sFDlVv~s~~l 348 (666)
-+|||+.||+|..+..++.+ .|+++|+++..+...+. .++..++.. .+...|+..+ ......||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~-N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKN-NVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999888753 69999999987766554 334444432 3333343322 11235799998532
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+ ..+..++..+.+.+++||++.++
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 34468999999999999999999
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.015 Score=62.51 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=69.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCC-CCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
..|||+|||.|.|+.+|++++. .|+.+|. +.+++.+.+ .|+ +.++..-.+.+.. ....||+|.++
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-----~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-----QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 4699999999999999999876 5666663 456655543 354 3333332222211 22579999887
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHhcCcEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~l~W~~~~~ 644 (666)
..|..+...+.++=.-++|++.++++-+.. ..+.++.+ -.|++...
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~ 294 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERV 294 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEE
Confidence 334444444444444478999999984444 45556555 26876543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.027 Score=63.49 Aligned_cols=110 Identities=23% Similarity=0.400 Sum_probs=72.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--ccccc-ccCCCCCC--C-CCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMH-DWCEPFDT--Y-PRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~-~~ce~~~~--y-p~tyDliha~ 589 (666)
.|||+|||+|.++.+|++.+. .|+.+|. +.++..+.++ |+ +.+++ |+-+.+.. + +.+||+|-++
T Consensus 300 ~VLDlgcGtG~~sl~la~~~~-----~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLARQAA-----EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred EEEEEeccCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 599999999999999998864 5666763 5677666543 44 33332 23222222 2 2679999876
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..|..+..++..+.+ |+|++.++++ +.....+.+..+.+ -.|++..
T Consensus 375 ------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~ 421 (443)
T PRK13168 375 ------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKR 421 (443)
T ss_pred ------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEE
Confidence 234445667766666 6999999999 55555666666643 3577653
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.014 Score=60.27 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=58.3
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCC--CCccceEEeccccccC-
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTY--PRTYDLLHAAGLFSVE- 595 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~y--p~tyDliha~~~f~~~- 595 (666)
.|||+|||+|.++.+++++-...-..+|+.+|- +.++..+.+.-. +.+.+. .+..+ +.+||+|-++==|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~---D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINA---DALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEc---chhcccccCCccEEEECCCCCCcc
Confidence 699999999999999876410000125666663 567777664321 333332 23223 4689999987555421
Q ss_pred ----CCC---CCHH-HHHHHhhhcccCCeEEEE
Q 005981 596 ----SKR---CNMS-TIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 596 ----~~~---c~~~-~~l~E~dRiLRPgG~~ii 620 (666)
+.+ ..+. .++...-|+||||+. |+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 111 2333 477777898888886 65
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.072 Score=53.82 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
+...+.+|.+...-+ ..+.+|+|+|+-.|+|++.+++. .|+|+|+.|..... + ..+...|+
T Consensus 29 Aa~KL~el~~k~~i~---~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq~d~ 94 (205)
T COG0293 29 AAYKLLELNEKFKLF---KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQGDI 94 (205)
T ss_pred HHHHHHHHHHhcCee---cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEeeec
Confidence 334455666655322 34589999999999999988866 49999998864311 1 12222232
Q ss_pred cCCC--------CCCCCeeEEEeccc---ccccccCh-------HHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLP--------YPSQAFDLIHCSRC---RINWTRDD-------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lp--------f~d~sFDlVv~s~~---l~h~~~d~-------~~~L~el~RvLkPGG~lv~st~ 377 (666)
..-. +....+|+|+|-.. .-++..|. ..++.-+.++|+|||.|++..+
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 1111 23345799985322 12222221 1445556789999999999875
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.023 Score=62.27 Aligned_cols=104 Identities=21% Similarity=0.299 Sum_probs=66.2
Q ss_pred CCCCeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC---CCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp---f~d~sFDlV 342 (666)
.++.+|||+.++.|.=+.++++. .|+++|.++.-+.... +..+..|+.+ .+...|...++ ...+.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 45689999999999655555543 3699999997665443 4445556664 33333444343 222359999
Q ss_pred Ee----cccc-cc------cccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 343 HC----SRCR-IN------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 343 v~----s~~l-~h------~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. +... ++ |... ...+|..+.++|||||.++.+|-
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 94 2211 11 1111 12678889999999999999973
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.077 Score=55.49 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~ 331 (666)
+..|..++.- .++.+||+-|.|+|+++-+++.. +++..|+...-..+|..++ ++.++.. .+..-|+..
T Consensus 94 ia~I~~~L~i----~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEI----RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcC----CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeeccc
Confidence 4455566642 45689999999999888877765 8999999765444554443 3345443 233335555
Q ss_pred CCCC--CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 332 LPYP--SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 Lpf~--d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
..|. +..+|.|+ +.+ +.+..++--++.+||.+|.-+++
T Consensus 169 ~GF~~ks~~aDaVF-----LDl-PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 169 SGFLIKSLKADAVF-----LDL-PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred CCccccccccceEE-----EcC-CChhhhhhhhHHHhhhcCceEEe
Confidence 4443 57889997 333 55666777777899988854444
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.059 Score=50.97 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=58.9
Q ss_pred CCCCeEEEECCCCchhHHHhcc-----C---CeEEEeCCcchHHHHHHHHHHHcC--CCc--eEEeecccCCCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP-----R---NVITMSIAPKDVHENQIQFALERG--APA--MVAAFATRRLPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~---~V~gvDiS~~~l~~a~~~~a~~rg--~~~--~~~~~d~e~Lpf~d~sFD 340 (666)
.+..+|+|+|||.|.++..|+. . +|+++|..+..+..++. .+++.+ ... .....+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK-RAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH-HHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4567999999999999988887 3 89999999987765553 333333 111 11111111111 145566
Q ss_pred EEEecccccccccChH-HHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 341 LIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
+++. +|-..++. .+|+-..+ ++-.+++..+..+..
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh~ 137 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCYHK 137 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCccch
Confidence 6663 66667765 44444444 555555543444443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.011 Score=59.76 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=63.2
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc-----cc--cccccccCCCCC
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-----GL--IGVMHDWCEPFD 577 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er-----Gl--ig~~~~~ce~~~ 577 (666)
|....+.+.++.+ -.||++|||.|-.+|-|++..- .|+.++...+|.-...+ |+ +.+.|+. -..
T Consensus 61 vA~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~-----~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD--G~~ 131 (209)
T COG2518 61 VARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVG-----RVVSIERIEELAEQARRNLETLGYENVTVRHGD--GSK 131 (209)
T ss_pred HHHHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhC-----eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC--ccc
Confidence 3356677777766 4599999999988888888732 55555544444333333 33 3344333 134
Q ss_pred CCC--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 578 TYP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 578 ~yp--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
-|| .-||.|+....... ++..|+ +-|+|||.+|+=
T Consensus 132 G~~~~aPyD~I~Vtaaa~~------vP~~Ll---~QL~~gGrlv~P 168 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPE------VPEALL---DQLKPGGRLVIP 168 (209)
T ss_pred CCCCCCCcCEEEEeeccCC------CCHHHH---HhcccCCEEEEE
Confidence 466 78999998744332 234444 469999999994
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.013 Score=63.00 Aligned_cols=94 Identities=22% Similarity=0.373 Sum_probs=67.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCC----CChhHHHhccc---cccccccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGF----NTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~----~~l~~~~erGl---ig~~~~~ce~~~~yp-~tyDliha~~~ 591 (666)
+.|||+|||+|-....-++.|+ -.|..++.. -..+++.+.|+ |.+.+.--|.+ ..| .-.|+|-+-..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA----~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA----RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc----ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 4499999999998877777775 255555543 34477777888 77888887777 467 89999987532
Q ss_pred --cccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 592 --FSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 592 --f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
|..+... +..+|.-=||.|+|||.++=
T Consensus 137 Gy~Ll~EsM--ldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESM--LDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhh--hhhhhhhhhhccCCCceEcc
Confidence 2222221 24788888999999998764
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.015 Score=63.68 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA 322 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~ 322 (666)
.+++.+.+.+.. .+ ..|||+-||+|.++..|++. +|+|+|+++.++..|+ +.|+.+++.+
T Consensus 184 ~l~~~~~~~l~~----~~-~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n 245 (352)
T PF05958_consen 184 KLYEQALEWLDL----SK-GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDN 245 (352)
T ss_dssp HHHHHHHHHCTT-----T-TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--S
T ss_pred HHHHHHHHHhhc----CC-CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCc
Confidence 344444555541 22 37999999999999999987 9999999999988776 4566667654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.087 Score=53.73 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=96.5
Q ss_pred hhhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHh--hCCCceEEEEeeccCCC----CCh-hHHHhccc--c
Q 005981 496 AESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALI--EQKFDCWVMNVVPVSGF----NTL-PVIYDRGL--I 566 (666)
Q Consensus 496 ~d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~--~~~~~vwvmnv~~~~~~----~~l-~~~~erGl--i 566 (666)
+..+.|.+++-.-........+.-.+++|+|+|-|-=|-=|+ .... +|+-+|+. +-| +++.|=|| +
T Consensus 45 ~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~-----~vtLles~~Kk~~FL~~~~~eL~L~nv 119 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDL-----KVTLLESLGKKIAFLREVKKELGLENV 119 (215)
T ss_pred CHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCC-----cEEEEccCchHHHHHHHHHHHhCCCCe
Confidence 445778877754444333222213569999999986555443 3322 46666651 333 44555588 8
Q ss_pred ccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEE---EEeChhHHHHHHHHHHhcCcEEEE
Q 005981 567 GVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY---IRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 567 g~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i---i~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
.++|...|.|..-++-||+|-|.. -+++..++.=.-.+||+||.++ +.-..+.+.+.++....+.+.+..
T Consensus 120 ~i~~~RaE~~~~~~~~~D~vtsRA-------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 120 EIVHGRAEEFGQEKKQYDVVTSRA-------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred EEehhhHhhcccccccCcEEEeeh-------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence 889999888874222299999873 3444555555568999999875 345667788888889999999877
Q ss_pred EeccCCCC-CceEEEEE
Q 005981 644 RETAEGPH-ASYRILTA 659 (666)
Q Consensus 644 ~~~~~~~~-~~e~~l~~ 659 (666)
+..-.-|. ..++.|+.
T Consensus 193 ~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 193 VFSLTVPELDGERHLVI 209 (215)
T ss_pred EEEeecCCCCCceEEEE
Confidence 65544442 23455443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.039 Score=55.84 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEE-eecc-c
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA-AFAT-R 330 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d~-e 330 (666)
..+.+.+++.+. .++++||.||-|-|.....+.++ .=+.++..+.-+. -++..+-.. -.+.+. ..-- +
T Consensus 88 tpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~k-rmr~~gw~e-k~nViil~g~WeD 160 (271)
T KOG1709|consen 88 TPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLK-RMRDWGWRE-KENVIILEGRWED 160 (271)
T ss_pred hHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHH-HHHhccccc-ccceEEEecchHh
Confidence 345666666665 35589999999999887777665 3455677775332 222222111 111221 1111 1
Q ss_pred CCC-CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 331 RLP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 331 ~Lp-f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.++ ++++.||-|+--....++ +|...+.+.+.|+|||+|.|-+-
T Consensus 161 vl~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 222 568889999854333455 77788899999999999998664
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.023 Score=60.33 Aligned_cols=120 Identities=10% Similarity=0.100 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHH----HcCC---CceE-
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL----ERGA---PAMV- 324 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~----~rg~---~~~~- 324 (666)
...++++|..+.+.-...+...+||--|||.|.++..|+.. .+.|-++|--|+-.. .++. ..+- -.++
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeee
Confidence 45678888888775333344568999999999999988865 556667776665322 2222 1110 0000
Q ss_pred ----------------------------------Eeecc-cCCC--CCCCCeeEEEecccccccccChHHHHHHHHHhcc
Q 005981 325 ----------------------------------AAFAT-RRLP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLR 367 (666)
Q Consensus 325 ----------------------------------~~~d~-e~Lp--f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLk 367 (666)
+.+|. +-.+ -..++||+|+.. .++.-..+.-.+|..+..+||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc-fFIDTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC-FFIDTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE-EEeechHHHHHHHHHHHHhcc
Confidence 10110 0001 112469999865 335554666789999999999
Q ss_pred CCeEEEEEEC
Q 005981 368 AGGYFAWAAQ 377 (666)
Q Consensus 368 PGG~lv~st~ 377 (666)
|||+++=.++
T Consensus 288 ~GGvWiNlGP 297 (369)
T KOG2798|consen 288 PGGVWINLGP 297 (369)
T ss_pred CCcEEEeccc
Confidence 9999987754
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.027 Score=62.15 Aligned_cols=110 Identities=14% Similarity=0.207 Sum_probs=67.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCC-CCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
+.|||++||+|.|+..|+.++. .|+.+|. +..++.+.+ .|+ +.++..-.+.+.. .-..||+|.++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~-----~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D-- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT-----QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN-- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC-----eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC--
Confidence 4699999999999999998865 4555653 455554443 233 2333322222211 11358998877
Q ss_pred cccCCCCCCH-HHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHhcCcEEEEE
Q 005981 592 FSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 592 f~~~~~~c~~-~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~l~W~~~~~ 644 (666)
..|..+ +.++..+. -++|++.++++-+.. ..+.++.+ -.|+++..
T Consensus 308 ----PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 308 ----PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred ----CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence 223332 34544454 379999999996554 45667766 36887543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.013 Score=62.44 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=38.4
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHH
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQ 311 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~ 311 (666)
+++++++.+.. .++..+||.+||.|..+..+++. .|+|+|.++.++..++
T Consensus 7 ll~Evl~~L~~----~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAI----KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCC----CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 35566666642 23469999999999999888765 6999999998886654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.067 Score=55.50 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=73.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHh----hCCCceEEEEeeccCCCCChhHHHhc----cccc---c-ccccCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALI----EQKFDCWVMNVVPVSGFNTLPVIYDR----GLIG---V-MHDWCEPFDT 578 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~----~~~~~vwvmnv~~~~~~~~l~~~~er----Glig---~-~~~~ce~~~~ 578 (666)
..++..|.- |||.|.|.|.++++|+ ..| .|++.-.- +..++.|.+. |+.- . .-|-||...
T Consensus 89 ~~gi~pg~r--VlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r----~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~- 160 (256)
T COG2519 89 RLGISPGSR--VLEAGTGSGALTAYLARAVGPEG-HVTTYEIR----EDFAKTARENLSEFGLGDRVTLKLGDVREGID- 160 (256)
T ss_pred HcCCCCCCE--EEEcccCchHHHHHHHHhhCCCc-eEEEEEec----HHHHHHHHHHHHHhccccceEEEecccccccc-
Confidence 456776655 9999999999999999 446 23433222 3445544432 5522 1 145555544
Q ss_pred CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcE
Q 005981 579 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~ 640 (666)
+..||.|-.+ ..+ --.+|-.++.+|+|||.+++- -..+.++++-+.++..+|-
T Consensus 161 -~~~vDav~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 161 -EEDVDAVFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred -ccccCEEEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 3588887765 222 258999999999999999885 5566666666666666653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.017 Score=61.45 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=39.3
Q ss_pred CccceEEeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEE--eChhHHHHHHHH
Q 005981 581 RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEI 633 (666)
Q Consensus 581 ~tyDliha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~--d~~~~~~~~~~i 633 (666)
..||+|-|+-.|... .......-.|.-+-+.|||||+||=| |...++.+|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 349999999776542 11223347889999999999999998 666677777765
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.033 Score=55.62 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCchhHHH--hccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAY--LLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~--L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+++|||+|+|+|..+.. .+.. .|+..|+.|... .+..-.++.+++...+...+ .+ ..+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d--~~-g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHAD--LI-GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeecc--cc-CCCcceeEEEeeceecC
Confidence 458999999999955443 3333 889999987543 33333455556544443322 22 36788999998876544
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEECCC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~P~ 379 (666)
- ..-..++. +.+.|+..|.-++..-|.
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 3 33345555 777777777766664443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.055 Score=55.63 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceE-EeecccCCC---CCCCCeeEEEec
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLP---YPSQAFDLIHCS 345 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~-~~~d~e~Lp---f~d~sFDlVv~s 345 (666)
..++.+||||+-||.|+..++++ .|+|+|..-..++.. .+....... ...++..+. +. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-----LR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-----LRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-----HhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 45689999999999999999987 899999987644332 122211111 111222222 22 367899976
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
-+++. +..+|..+..+|+++|.++.---|
T Consensus 152 vSFIS----L~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 152 VSFIS----LKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred eehhh----HHHHHHHHHHhcCCCceEEEEecc
Confidence 55444 478899999999999998877544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.012 Score=64.50 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=59.8
Q ss_pred eEeeccccchHHHHHHhhCC-CceEEEEeeccCC-CCChhHHHh----ccc-----cccccccCCCCCCCCCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSG-FNTLPVIYD----RGL-----IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~-~~~l~~~~e----rGl-----ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
.++|+|||+|+...+....+ + +++.++. ...+..+-+ .++ + +.+ |+--.++-.++||.+.+-
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~-----~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~-~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKA-----GVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVA-DFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccCcCcCchhHHHHHhccC-----CccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehh-hhhcCCCCccccCcEEEE
Confidence 57899999999999997763 3 4555442 222222111 111 3 222 221122223999999998
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+-.|.++. ..++.|+.|+|+|||+++.-
T Consensus 186 d~~~~~~~~---~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 EVVCHAPDL---EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred eecccCCcH---HHHHHHHhcccCCCceEEeH
Confidence 777766654 79999999999999999984
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.031 Score=56.66 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=55.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhc---cC-CeEEEeCCcchHHHHHHHH------HHHcCCCc---e
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PR-NVITMSIAPKDVHENQIQF------ALERGAPA---M 323 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~---~~-~V~gvDiS~~~l~~a~~~~------a~~rg~~~---~ 323 (666)
..+..+++.+. + .+....+|||||.|......+ .. ..+|+++.+.-...+.... .+..|... .
T Consensus 29 ~~~~~il~~~~-l---~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 29 EFVSKILDELN-L---TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp HHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred HHHHHHHHHhC-C---CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 44555556554 2 345799999999996543333 22 5999999986443333211 11122211 1
Q ss_pred EEeecccCCCCC---CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 324 VAAFATRRLPYP---SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 324 ~~~~d~e~Lpf~---d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...|..+.++. -..-|+|++++.. +.++....|.++..-||+|-.++ ++.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 222222111110 0346999988753 33455677788888999887764 543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.012 Score=57.75 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=54.6
Q ss_pred CceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCC---hhHHHhcc------ccc-cccccCCCC--CCC-CC
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNT---LPVIYDRG------LIG-VMHDWCEPF--DTY-PR 581 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~---l~~~~erG------lig-~~~~~ce~~--~~y-p~ 581 (666)
.+-++||++|||.|-.|.+++.. +. .|+-.|.+.. ++...++. -+. ...+|-+.. ... ++
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~-----~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAA-----RVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-S-----EEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-S
T ss_pred cCCceEEEECCccchhHHHHHhccCCc-----eEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccc
Confidence 34457999999999655555555 43 3333443222 23333331 133 347897754 111 37
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.||+|.+++++=.. -.++.++.=++++|+|+|.+++..
T Consensus 119 ~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 119 SFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 89999999876542 345788888999999999988864
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.17 Score=55.04 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=77.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhcccccccc-ccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH-DWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~-~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
.+||+||..|||.-.|+++|. .|+.||...+-+...+-+.+-.+. +-..-.+. ++.+|++-|+- .|
T Consensus 214 ~vlDLGAsPGGWT~~L~~rG~-----~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~-~~~vDwvVcDm-------ve 280 (357)
T PRK11760 214 RAVDLGAAPGGWTYQLVRRGM-----FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP-RKNVDWLVCDM-------VE 280 (357)
T ss_pred EEEEeCCCCcHHHHHHHHcCC-----EEEEEechhcCHhhhCCCCEEEEeccCcccCCC-CCCCCEEEEec-------cc
Confidence 599999999999999999986 677777655555556666544442 22111221 47899999982 25
Q ss_pred CHHHHHHHhhhcccCC--eEEEEE-------eChhH---HHHHHHHHH--hcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPG--GHVYIR-------DSIDV---MDELQEIGK--AMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPg--G~~ii~-------d~~~~---~~~~~~i~~--~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
.-..++.=|-+.|..| ..+|++ +..++ ++.|.+.+. .+.+.++++.. -|++|.|-|.-.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khL---yHdReEiTv~~~ 353 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQL---YHDREEVTVHLR 353 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeee---ecCCceEEEEEE
Confidence 5567777788888776 578886 22222 333444333 33455565543 234555655443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.0099 Score=60.47 Aligned_cols=123 Identities=13% Similarity=0.231 Sum_probs=85.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh---ccccccccccCCCCCCCC-CccceEEecccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD---RGLIGVMHDWCEPFDTYP-RTYDLLHAAGLF 592 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e---rGlig~~~~~ce~~~~yp-~tyDliha~~~f 592 (666)
..-.++|+||+.|..+..|...|+. .++-+|. ..|++-+.+ -+++-.+..--|.|..|- +++|||-++ +=
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve----kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS-ls 146 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE----KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS-LS 146 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh----heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh-hh
Confidence 3456999999999999999999653 2333443 466665554 477666655556666564 999999876 22
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE----eChhH-------------------------HHHHHHHHHhcCcEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR----DSIDV-------------------------MDELQEIGKAMGWHVTL 643 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~----d~~~~-------------------------~~~~~~i~~~l~W~~~~ 643 (666)
.||. -+++.-|....-+|||.|.||-+ |+... ++.+..++.+-..+...
T Consensus 147 lHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 147 LHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred hhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 2343 35678899999999999999975 43322 34455667777777776
Q ss_pred Eecc
Q 005981 644 RETA 647 (666)
Q Consensus 644 ~~~~ 647 (666)
.|++
T Consensus 225 vDtD 228 (325)
T KOG2940|consen 225 VDTD 228 (325)
T ss_pred eccc
Confidence 6664
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.042 Score=58.08 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=85.3
Q ss_pred CCceeeEeeccccchHHHH-HHhhCCCceEEEEeeccC-C----CCChhHHHhccc--c-ccccccCCCCCCCC---Ccc
Q 005981 516 KMKLRNVLDMRAGFGGFAA-ALIEQKFDCWVMNVVPVS-G----FNTLPVIYDRGL--I-GVMHDWCEPFDTYP---RTY 583 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa-~L~~~~~~vwvmnv~~~~-~----~~~l~~~~erGl--i-g~~~~~ce~~~~yp---~ty 583 (666)
.++=-.||||-||.|..-- +|.+.+.. +..|.=+| + ..-.+.|.+||| | .+.+..|=...+|- -..
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3444569999999997433 23333321 11333333 2 344578999999 3 44555553333343 567
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe--ChhHHHHHHHHHHh----cCcEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD--SIDVMDELQEIGKA----MGWHVTLR 644 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d--~~~~~~~~~~i~~~----l~W~~~~~ 644 (666)
+|+-.+|||....+.-.+...|.-+.++|.|||++|.+- -.-.++.|...+.+ --|-.+.+
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 999999999998887666778889999999999999995 34456677777766 46877655
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.035 Score=55.84 Aligned_cols=128 Identities=15% Similarity=0.243 Sum_probs=69.4
Q ss_pred hhhhhHhHHHHHHHHH-Hhcc-cCCCceeeEeeccccchH----HHHHHhh--CCCceEEEEeeccCC-CCChhHHHhcc
Q 005981 494 FKAESKYWNEIIESYV-RALH-WKKMKLRNVLDMRAGFGG----FAAALIE--QKFDCWVMNVVPVSG-FNTLPVIYDRG 564 (666)
Q Consensus 494 f~~d~~~w~~~v~~Y~-~~l~-~~~~~iRnvlD~g~G~Gg----faa~L~~--~~~~vwvmnv~~~~~-~~~l~~~~erG 564 (666)
|--|...|....+... .++. -..++--+|..+||++|- .|..|.+ .+..-|-+.|...|- +..|+.|. +|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar-~G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR-AG 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH-HT
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH-hC
Confidence 4445556655554443 2222 223355679999999995 6666666 222235567777773 56666553 23
Q ss_pred c-----------------------------------cc-cccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHh
Q 005981 565 L-----------------------------------IG-VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEM 608 (666)
Q Consensus 565 l-----------------------------------ig-~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~ 608 (666)
+ |. ..|+.++ ....+..||+|-|..|+-.... -.-..++.-+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHHHH
Confidence 2 11 1245554 2233489999999999876543 2336899999
Q ss_pred hhcccCCeEEEEEeCh
Q 005981 609 DRMLRPGGHVYIRDSI 624 (666)
Q Consensus 609 dRiLRPgG~~ii~d~~ 624 (666)
.+.|+|||++++-...
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999996443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.083 Score=56.93 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=65.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEeec
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAFA 328 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~d 328 (666)
..++.+....+++ .+.+|||+|.|.|.-...+.+. .++.++.|+ .+.+.--..+..-+... ......
T Consensus 100 asL~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 100 ASLDELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccc
Confidence 4455666666554 4567999999998655444432 556666665 23222222222211110 011111
Q ss_pred ccCCCCC-CCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYP-SQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~-d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++++++ ...|++|+...-+++.... ....+..+..++.|||.|++...
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 3455554 4567887765554554222 12578889999999999999964
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.064 Score=54.75 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=67.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
+....+..-+..+ .-.++.+||-+|..+|+...++++- .|++|++|+...... ...|++|....-+. .|+ +
T Consensus 57 KLaAai~~Gl~~~-~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL-~~la~~R~NIiPIl-~DA-r 132 (229)
T PF01269_consen 57 KLAAAILKGLENI-PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDL-LNLAKKRPNIIPIL-EDA-R 132 (229)
T ss_dssp HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHH-HHHHHHSTTEEEEE-S-T-T
T ss_pred HHHHHHHcCcccc-CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHH-HHHhccCCceeeee-ccC-C
Confidence 3344444444322 1145689999999999877777643 799999999755433 46777764222122 222 2
Q ss_pred CC----CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LP----YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lp----f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.| .--+..|+|++--. +- +..+.++.++...||+||.++++-
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa--Qp-~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA--QP-DQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S--ST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC--Ch-HHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 11258999996422 11 334577888999999999999884
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.071 Score=54.52 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=81.1
Q ss_pred ceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCCh----hHHHhccc---ccccc--ccCCCCCC-CCCccce
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTL----PVIYDRGL---IGVMH--DWCEPFDT-YPRTYDL 585 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l----~~~~erGl---ig~~~--~~ce~~~~-yp~tyDl 585 (666)
.-++||.+|.+.|--|..|+.- +.+- -++.++- +.+. +...+-|+ |-++. ++-|-+.. ...+||+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g---~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG---RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC---eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 4667999999999877777653 1010 1444442 3333 34444566 33444 67666663 6799999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE---------eC-----hhHHHHHHHHHHhcCc----EEEEEecc
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---------DS-----IDVMDELQEIGKAMGW----HVTLRETA 647 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~---------d~-----~~~~~~~~~i~~~l~W----~~~~~~~~ 647 (666)
|-.+ .++-+.+..+-+.-++|||||.+|+. +. ......++....-+.| +..+...
T Consensus 136 iFID------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~- 208 (219)
T COG4122 136 VFID------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPL- 208 (219)
T ss_pred EEEe------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEec-
Confidence 9876 23445678999999999999999985 12 2334445555554444 4443332
Q ss_pred CCCCCceEEEEEEeC
Q 005981 648 EGPHASYRILTADKR 662 (666)
Q Consensus 648 ~~~~~~e~~l~~~k~ 662 (666)
++.++++.|.
T Consensus 209 -----gDGl~v~~k~ 218 (219)
T COG4122 209 -----GDGLLLSRKR 218 (219)
T ss_pred -----CCceEEEeec
Confidence 2568998885
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.006 Score=58.55 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=42.0
Q ss_pred ccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
....+|.++|.|+|+|..++.|+.-+. ..++++++|+|||||++-++.+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 456789999999999999999986443 3899999999999999999954
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.047 Score=62.00 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=67.0
Q ss_pred ccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCC-C---CChhHHHhc-cc--cccccccCCCC-CCCC
Q 005981 513 HWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSG-F---NTLPVIYDR-GL--IGVMHDWCEPF-DTYP 580 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~-~---~~l~~~~er-Gl--ig~~~~~ce~~-~~yp 580 (666)
+...|. .||||.||-||=..+|++. |. |+.+|. . ..|.-..+| |+ +-+.+.-...+ ..+|
T Consensus 110 ~~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~------lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~ 181 (470)
T PRK11933 110 DDNAPQ--RVLDMAAAPGSKTTQIAALMNNQGA------IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP 181 (470)
T ss_pred CCCCCC--EEEEeCCCccHHHHHHHHHcCCCCE------EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch
Confidence 445564 4999999999966666553 42 444442 2 333444455 65 33333222222 2356
Q ss_pred CccceEE----eccccccCCCC-----CC---H-------HHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHhc
Q 005981 581 RTYDLLH----AAGLFSVESKR-----CN---M-------STIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKAM 637 (666)
Q Consensus 581 ~tyDlih----a~~~f~~~~~~-----c~---~-------~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~l 637 (666)
..||.|. |++.=..-++. -. + ..+|...-+.|||||++|.+ ...|.-+.|+.+++..
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 7899999 66442211110 00 1 27888889999999999997 3344444455555553
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.094 Score=64.77 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=73.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc-------------------cc---cccc-cccCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-------------------GL---IGVM-HDWCEPF 576 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er-------------------Gl---ig~~-~~~ce~~ 576 (666)
.|||+|||.|-.+.+|+++.-. -.|+.+| ++..++++.+. ++ +.++ .||.+.+
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~---~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLP---SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 5999999999999999886210 1455565 34555555222 11 2333 4665544
Q ss_pred CCCCCccceEEecccc---------c-----cC--------CCCCCH-------------HHHHHHhhhcccCCeEEEEE
Q 005981 577 DTYPRTYDLLHAAGLF---------S-----VE--------SKRCNM-------------STIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 577 ~~yp~tyDliha~~~f---------~-----~~--------~~~c~~-------------~~~l~E~dRiLRPgG~~ii~ 621 (666)
......||+|-++==. + +. ...|-+ ..++.+.-++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2111259998875211 0 00 012222 47888999999999999998
Q ss_pred eChhHHHHHH-HHHHhcCcEE
Q 005981 622 DSIDVMDELQ-EIGKAMGWHV 641 (666)
Q Consensus 622 d~~~~~~~~~-~i~~~l~W~~ 641 (666)
-..+.-+.|+ +++++..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 6666667777 6888777765
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.09 Score=58.08 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCeEEEECCCCchhHHHhcc-------------------CCeEEEeCCcchHHHHHHHHHHH-------------cCCCc
Q 005981 275 IRVVMDAGCGVASFGAYLLP-------------------RNVITMSIAPKDVHENQIQFALE-------------RGAPA 322 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------------------~~V~gvDiS~~~l~~a~~~~a~~-------------rg~~~ 322 (666)
..+|+|+|||+|.++..+.. .+|.--|+-.+|.+......... .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 45899999999965543311 15555677666655444332210 11111
Q ss_pred eEEee---cccCCCCCCCCeeEEEeccccccccc
Q 005981 323 MVAAF---ATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 323 ~~~~~---d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
.+..+ ....--||.++.++++++.+ +||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 22221 12222378999999998876 78864
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.055 Score=56.65 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
..+++.|.+.+.. .....|||||+|.|.++..|.+. +++++|+++......+..+. ......+...|...+.
T Consensus 16 ~~~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 4567777777752 24579999999999999999876 89999999876543332222 1223344555666665
Q ss_pred CCC---CCeeEEEecccccccccChHHHHHHHHHhccC
Q 005981 334 YPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (666)
Q Consensus 334 f~d---~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkP 368 (666)
... +.-..|+++.- .+. ...++.++...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 443 35566765432 222 23566666553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.092 Score=53.63 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=79.5
Q ss_pred ccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCCCCChhHHHhc-cccccccccCCCCCCCC---Cccc
Q 005981 513 HWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPFDTYP---RTYD 584 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~~~~l~~~~er-Glig~~~~~ce~~~~yp---~tyD 584 (666)
+++.|+ .||-+||..|....++.+- |. |+.....|.....-+.++-.| .+|.++.|-..+-. |. ...|
T Consensus 70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~-Y~~lv~~VD 145 (229)
T PF01269_consen 70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEK-YRMLVEMVD 145 (229)
T ss_dssp S--TT---EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGG-GTTTS--EE
T ss_pred CCCCCC--EEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHH-hhccccccc
Confidence 344443 4999999999988888654 64 888888887777888999998 77988888743211 21 4667
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE----------eChhHHHHHHHHHHhcCcEEE
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR----------DSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~----------d~~~~~~~~~~i~~~l~W~~~ 642 (666)
+|.++ ..++-..+-+++-++.-||+||+++|. +..++...-.+.++.-..+..
T Consensus 146 vI~~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 146 VIFQD-----VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp EEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEec-----CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 77765 223334567888899999999999996 223343443444455556654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.062 Score=52.52 Aligned_cols=68 Identities=25% Similarity=0.280 Sum_probs=42.2
Q ss_pred eEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCC-C-CCCCC-eeEEEec
Q 005981 277 VVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRL-P-YPSQA-FDLIHCS 345 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~L-p-f~d~s-FDlVv~s 345 (666)
.|+|+.||.|..+..++.. +|+++|+++..+.-++ ..|+..|+.. .+...|..++ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999987 8999999998776665 4566666542 3444442222 1 11122 8999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.034 Score=56.02 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=54.2
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~yp~tyDliha~~~f 592 (666)
.|||+|||+|.++..++.+++ -.|+.++. +..+..+.+ .|+ +.+++.-+.. +......||+|-++==|
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a----~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA----AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 599999999999986665643 14555553 333333322 233 3344332222 22112579999887433
Q ss_pred ccCCCCCC-HHHHHHHhh--hcccCCeEEEEEeCh
Q 005981 593 SVESKRCN-MSTIMLEMD--RMLRPGGHVYIRDSI 624 (666)
Q Consensus 593 ~~~~~~c~-~~~~l~E~d--RiLRPgG~~ii~d~~ 624 (666)
+.. .+.++.-+. .+|+|+|.+|+....
T Consensus 132 -----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 -----RKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -----CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222 234444343 468999999998554
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.21 Score=54.89 Aligned_cols=102 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCeEEEECCCCchhHHHhccC-------------------------------------------CeEEEeCCcchHHHHH
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-------------------------------------------NVITMSIAPKDVHENQ 311 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-------------------------------------------~V~gvDiS~~~l~~a~ 311 (666)
...++|-=||+|++....+-. .++|+|+++.++..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 368999999999887544321 1679999999998886
Q ss_pred HHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEecccccccccCh---H----HHHHHHHHhccCCeEEEEEEC
Q 005981 312 IQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD---G----ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 312 ~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~---~----~~L~el~RvLkPGG~lv~st~ 377 (666)
..|+..|+.. .+.+.|+..++-+-+.+|+|+|+--.-.-..+. . .+.+.+.+.++--+.+++++.
T Consensus 272 -~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 -ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred -HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 5677778764 455556777764337899999874311111111 1 345567788888889999874
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.042 Score=61.91 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=52.4
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc
Q 005981 250 QFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA 322 (666)
Q Consensus 250 ~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~ 322 (666)
.|.+.....++.+...+.+...-.....+||+-||||.++..++.. .|+|+++++.++..|. ..|..+|+.+
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisN 432 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISN 432 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccc
Confidence 3444444455666666655433344578999999999999999987 9999999999887775 4666777655
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.35 Score=49.89 Aligned_cols=132 Identities=20% Similarity=0.339 Sum_probs=86.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cccc-cccCCCCCC--CCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVM-HDWCEPFDT--YPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~-~~~ce~~~~--yp~tyDliha~~~f~~ 594 (666)
+.+||+|+-+|||--.|+++|+ --|..+| +.++|.--+.... +-++ -.....+.+ +..--|++.|+-.|-.
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gA----k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS 156 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGA----KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS 156 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCC----cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh
Confidence 4599999999999999999987 3566777 4677766555544 2122 122111111 1135678998866643
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEE-------------------eC---hhHHHHHHHHHHhcCcEEEEEecc--CCC
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DS---IDVMDELQEIGKAMGWHVTLRETA--EGP 650 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~-------------------d~---~~~~~~~~~i~~~l~W~~~~~~~~--~~~ 650 (666)
+..+|-.+..+|.|+|-++.- |. ..++.++.+.++.+.|.+.-..-. .|.
T Consensus 157 ------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 157 ------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred ------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 358899999999999988873 33 346788999999999998644221 122
Q ss_pred C-CceEEEEEEe
Q 005981 651 H-ASYRILTADK 661 (666)
Q Consensus 651 ~-~~e~~l~~~k 661 (666)
. .-|-++..+|
T Consensus 231 ~GNiE~l~~~~k 242 (245)
T COG1189 231 KGNIEFLLLLKK 242 (245)
T ss_pred CCcEeeeeeeec
Confidence 2 2355555554
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.28 Score=51.58 Aligned_cols=91 Identities=19% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh------ccc----cccccccCCCCCCCCCcc
Q 005981 515 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD------RGL----IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 515 ~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e------rGl----ig~~~~~ce~~~~yp~ty 583 (666)
..++-++||=+|.|-||-++.+++.+- +|+-++- +..++++.+ .++ +.++- +. .....++|
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh~~-----~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~f 140 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKYDT-----HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKY 140 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCcCC-----eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcC
Confidence 456789999999999999999999852 3333332 223333322 122 22221 21 11123789
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|+|-.+.+|+ +.....+.|+|+|||.++..
T Consensus 141 DVIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 141 DLIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CEEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 9999986654 35567899999999999996
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.35 Score=52.66 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=58.4
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhcc-c---------cccccccCCC-CCCCCCccceE
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRG-L---------IGVMHDWCEP-FDTYPRTYDLL 586 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erG-l---------ig~~~~~ce~-~~~yp~tyDli 586 (666)
+-++||-+|+|.|+.++++++.+ ++--+-++.+| +..++++.+.- + +.++.+-+-. +..-++.||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD-~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDID-QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECC-HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 56789999999999999998863 22223333343 45556654431 1 1222211111 11124789999
Q ss_pred EeccccccCC-CCCC---HHHHHH-HhhhcccCCeEEEEE
Q 005981 587 HAAGLFSVES-KRCN---MSTIML-EMDRMLRPGGHVYIR 621 (666)
Q Consensus 587 ha~~~f~~~~-~~c~---~~~~l~-E~dRiLRPgG~~ii~ 621 (666)
-++ ++.... ..|. -.+.+. .+.|.|+|||.+++.
T Consensus 181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 987 332111 1121 125565 789999999999875
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.15 Score=55.76 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=64.8
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-------CC-------
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-------YP------- 580 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-------yp------- 580 (666)
|||++||+|.|+.+|++... .|+.++. +.+++.+.+. |+ +.++..-.+.+.. ++
T Consensus 201 vlDl~~G~G~~sl~la~~~~-----~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 201 LLELYCGNGNFSLALAQNFR-----RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred EEEEeccccHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 99999999999999988743 4666663 4566555543 33 3333222222110 10
Q ss_pred --CccceEEeccccccCCCCCCHH-HHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEE
Q 005981 581 --RTYDLLHAAGLFSVESKRCNMS-TIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 581 --~tyDliha~~~f~~~~~~c~~~-~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
..||+|..+ ..|..+. .++. .|++|++.+|++ |+....+.++.+.+. |++...
T Consensus 276 ~~~~~d~v~lD------PPR~G~~~~~l~---~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v 332 (353)
T TIGR02143 276 KSYNCSTIFVD------PPRAGLDPDTCK---LVQAYERILYISCNPETLKANLEQLSET--HRVERF 332 (353)
T ss_pred ccCCCCEEEEC------CCCCCCcHHHHH---HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEE
Confidence 126777665 3355533 3433 355699999998 555566778877755 887543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.016 Score=51.56 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=35.5
Q ss_pred EEECCCCchhHHHhccC-------CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecc-cCCC-CCCCCeeEEEeccc
Q 005981 279 MDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RRLP-YPSQAFDLIHCSRC 347 (666)
Q Consensus 279 LDIGCGtG~~a~~L~~~-------~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~-e~Lp-f~d~sFDlVv~s~~ 347 (666)
||||+..|..+..+++. +++++|..+. .... .+..++.+... .+...+. +.++ ++.++||+|+.- .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~-~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQA-QEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-G 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-cccc-chhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-C
Confidence 68999999777776653 5899999874 1111 12222223222 2222222 1121 225799999953 3
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
-|.+ +.....+..+.+.|+|||.+++-
T Consensus 78 ~H~~-~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 DHSY-EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCH-HHHHHHHHHHHHHcCCCeEEEEe
Confidence 2333 44557888899999999999875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.27 Score=52.53 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhhcccccCC-CCCCeEEEECCCCch----hHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEee-
Q 005981 254 GADQYLDQIAKMVPDITWG-HHIRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAF- 327 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g-~~~~~VLDIGCGtG~----~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~- 327 (666)
+...|+..|.++|.....+ ....++||||||... ++..+..-+++|.|+++..+..|+....+..++...+...
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4446777777777642211 124589999999873 3444444499999999999988886655542554322221
Q ss_pred --c----ccCCCCCCCCeeEEEeccccccc
Q 005981 328 --A----TRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 328 --d----~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+ ...+-.+.+.||+.+|+--++.-
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred cCCccccchhhhcccceeeEEecCCccccC
Confidence 1 11122234689999998664443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.07 Score=52.96 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=59.7
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc----CCCc-eEEeecccCCCCCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----GAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r----g~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
..+.|+|+|+|.++...++. +|++++..|.-. ..|.++ |..+ .+...|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 57999999999877665554 999999998633 333333 3332 344556666556 467999975431
Q ss_pred cccccC-hHHHHHHHHHhccCCeEEEE
Q 005981 349 INWTRD-DGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 349 ~h~~~d-~~~~L~el~RvLkPGG~lv~ 374 (666)
--+..+ ...++..+...||-+|.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 222222 23678888888888888743
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.16 Score=51.02 Aligned_cols=128 Identities=20% Similarity=0.324 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCCh----hHHH---hcc-c--ccc
Q 005981 500 YWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTL----PVIY---DRG-L--IGV 568 (666)
Q Consensus 500 ~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l----~~~~---erG-l--ig~ 568 (666)
.|.+..-.|..-+. +--..-||||||||+-..|..+-=|..++..--.+. .+-+ +... +-| + |++
T Consensus 46 DWS~~yp~f~~~~~----~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~v 121 (249)
T KOG3115|consen 46 DWSKYYPDFRRALN----KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISV 121 (249)
T ss_pred cHHHhhhhhhhhcc----ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccccee
Confidence 36665555544333 112378999999999999988722333333322221 1111 1111 112 2 788
Q ss_pred ccccCCCCCCCCCccceEEeccccccC--------CCCC-CH-HHHHHHhhhcccCCeEEEEE-eChhHHHHHHHH
Q 005981 569 MHDWCEPFDTYPRTYDLLHAAGLFSVE--------SKRC-NM-STIMLEMDRMLRPGGHVYIR-DSIDVMDELQEI 633 (666)
Q Consensus 569 ~~~~ce~~~~yp~tyDliha~~~f~~~--------~~~c-~~-~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i 633 (666)
++..|-- ..|+-|-.-..+-.|-.. +++- -+ ..+|.|.-=+||+||.++.. |-.+..+-+.+.
T Consensus 122 lr~namk--~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~ 195 (249)
T KOG3115|consen 122 LRTNAMK--FLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKH 195 (249)
T ss_pred eeccchh--hccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHH
Confidence 8888633 335655543333322211 1111 11 37888999999999999874 555544444443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.065 Score=52.01 Aligned_cols=105 Identities=12% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEee--c--ccCCCCCCCCeeEE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAF--A--TRRLPYPSQAFDLI 342 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~--d--~e~Lpf~d~sFDlV 342 (666)
+++||++|.|--.++..|... .|...|-....+... +....++... ...+. . ..+.......||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv--~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNV--EKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHH--HHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 378999999965555544432 677777665544322 2222222000 01011 0 11112234689999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
+|+.| ..+.+.-..++..+.+.|+|.|..++..+-...+
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 99998 4443555688899999999999988876533333
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.061 Score=57.10 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=65.5
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEe-ecccCC-C-CCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FATRRL-P-YPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~-~d~e~L-p-f~d~sFDlVv~ 344 (666)
.++.+|||+.+|.|.=+.++++. .|++.|++..-+.... +..+..|....... .|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34578999999999655555432 8999999997665544 34445566554333 333322 1 22346999994
Q ss_pred ----cccc-cccccC----------------hHHHHHHHHHhc----cCCeEEEEEEC
Q 005981 345 ----SRCR-INWTRD----------------DGILLLEVNRML----RAGGYFAWAAQ 377 (666)
Q Consensus 345 ----s~~l-~h~~~d----------------~~~~L~el~RvL----kPGG~lv~st~ 377 (666)
+... +.-.++ ...+|..+.+.| ||||+++.+|-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 3220 110111 126788899999 99999999983
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.56 Score=49.54 Aligned_cols=46 Identities=20% Similarity=0.498 Sum_probs=36.1
Q ss_pred CHHHHHHHhhhcccCCeEEEE--------EeC-------hh-HHHHHHHHHHhcCcEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPGGHVYI--------RDS-------ID-VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii--------~d~-------~~-~~~~~~~i~~~l~W~~~~~~ 645 (666)
++-+.|..|.++|||||++|= .+. .+ .+++|+.+++++.|++....
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 456999999999999996553 243 33 38999999999999987554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.25 Score=51.57 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=73.9
Q ss_pred ceeeEeeccccchHHHHHHhh----CCCceEEEEeeccCCCCChhHHHhccc---ccccccc-CCCCCC------CCCcc
Q 005981 518 KLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDW-CEPFDT------YPRTY 583 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~-ce~~~~------yp~ty 583 (666)
+-++||.+|+++|--+.+|+. .| .|+++-.-+-...-..+...+-|+ |-+.++- .|.++. +..+|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 456899999999876666654 23 234433322111122233344566 4444332 222222 34699
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe---------Ch-----hHH----HHHHH----HHHhcCcEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---------SI-----DVM----DELQE----IGKAMGWHV 641 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d---------~~-----~~~----~~~~~----i~~~l~W~~ 641 (666)
|+|-.++ ++-.....+...-+.|||||.+|+.+ .. ... +.|++ +.+.=++++
T Consensus 158 D~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~ 231 (247)
T PLN02589 158 DFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEI 231 (247)
T ss_pred cEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9999872 23334566666678999999988842 10 111 12333 455557787
Q ss_pred EEEeccCCCCCceEEEEEEeC
Q 005981 642 TLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 642 ~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.+....+ .+++++|.
T Consensus 232 ~llPigD------Gl~l~~k~ 246 (247)
T PLN02589 232 CMLPVGD------GITLCRRI 246 (247)
T ss_pred EEEEeCC------ccEEEEEe
Confidence 7776544 48888885
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.23 Score=53.95 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCCeEEEECCC-CchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+++.+|+=+|+| .|.++..+++. +|+++|.++. ..+.|++.|....+...+.+...--.+.||+|+.. +
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-v- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-V- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-C-
Confidence 456889999888 33667666663 9999999875 33567776655444422222222112349999843 2
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
. ...+....+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56778889999999999999765
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.13 Score=54.08 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc---ccccccccCCCCCCCCCc-
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG---LIGVMHDWCEPFDTYPRT- 582 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG---lig~~~~~ce~~~~yp~t- 582 (666)
..+.+++..+ ..|||+|||+|.++.+|++++. .|+.+|. +.+++.+.++. -+.+.+...+.++ ++.-
T Consensus 34 i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~-----~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~-~~~~~ 105 (272)
T PRK00274 34 IVDAAGPQPG--DNVLEIGPGLGALTEPLLERAA-----KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVD-LSELQ 105 (272)
T ss_pred HHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCC-----cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCC-HHHcC
Confidence 3344455444 3699999999999999999964 4555653 57777776652 2444443333332 3322
Q ss_pred cceEEec
Q 005981 583 YDLLHAA 589 (666)
Q Consensus 583 yDliha~ 589 (666)
+|.|.++
T Consensus 106 ~~~vv~N 112 (272)
T PRK00274 106 PLKVVAN 112 (272)
T ss_pred cceEEEe
Confidence 5777766
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.27 Score=53.53 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC--------------------CeEEEeCCcchHHHHHHHHHHHc----CCCceEEee-
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALER----GAPAMVAAF- 327 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvDiS~~~l~~a~~~~a~~r----g~~~~~~~~- 327 (666)
...-+|+|+||.+|..+..+.+. +|+--|+-.+|.+.......... .....+..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34468999999999655443211 56666887776654433222110 112222222
Q ss_pred --cccCCCCCCCCeeEEEecccccccc
Q 005981 328 --ATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 328 --d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
....--||+++.|+++++.+ +||.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWL 120 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWL 120 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-
T ss_pred CchhhhccCCCCceEEEEEech-hhhc
Confidence 23333378999999998776 7775
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.18 Score=52.67 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=44.4
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCCCCccce
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTYPRTYDL 585 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~yp~tyDl 585 (666)
.+++..+ .+|||+|||.|.+..+|++++. .|+.++. +.+++.+.++ +-+.+.+...+.++ +| .||.
T Consensus 24 ~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~-----~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~-~~d~ 94 (258)
T PRK14896 24 YAEDTDG--DPVLEIGPGKGALTDELAKRAK-----KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP-EFNK 94 (258)
T ss_pred hcCCCCc--CeEEEEeCccCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch-hceE
Confidence 3444444 5699999999999999999965 4455553 4566666554 22444544333332 23 4788
Q ss_pred EEecc
Q 005981 586 LHAAG 590 (666)
Q Consensus 586 iha~~ 590 (666)
|.++-
T Consensus 95 Vv~Nl 99 (258)
T PRK14896 95 VVSNL 99 (258)
T ss_pred EEEcC
Confidence 88763
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.061 Score=54.31 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=51.5
Q ss_pred eeEeeccccchHHHHHHhh--CCCceEEEEeeccCCCCChhHHHhccc---cccccccCCCCCCCCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~--~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
.+|+||-||.|.|+--+++ +++.|+..-+-|-.-.-..+-+...++ |-+++.-|..+.. ...+|-|.+.
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~----- 176 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN----- 176 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE------
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC-----
Confidence 3599999999999999998 665344443333221222222223344 5556666665554 5888976665
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVY 619 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~i 619 (666)
+...+ ...|-+.-+++|+||.+=
T Consensus 177 lp~~~--~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LPESS--LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TSSG--GGGHHHHHHHEEEEEEEE
T ss_pred ChHHH--HHHHHHHHHHhcCCcEEE
Confidence 23222 367888899999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.39 Score=52.23 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc---C-C-Cc--eEEeecccC-CCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER---G-A-PA--MVAAFATRR-LPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r---g-~-~~--~~~~~d~e~-Lpf~d~sFD 340 (666)
+..++||-+|.|.|.-++.|.+. +|+-+|++|.|++-+........ + . .. .+...|+-+ +.-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 44679999999999999998876 89999999999876653322211 1 1 11 222223222 222346899
Q ss_pred EEEecccccccccCh-----HHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~-----~~~L~el~RvLkPGG~lv~st~ 377 (666)
.|+.-.- -.-.+.. ..+..-+.|.|+++|.+++..-
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 9984211 1110111 2566678899999999999753
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.33 Score=48.92 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.1
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPK 305 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~ 305 (666)
-.+.|||||-|.+...|+.. -++|++|-..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 46999999999999999876 6889988554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.13 Score=47.92 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred eEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHH
Q 005981 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFA 315 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a 315 (666)
++||+|||.|.++..++.. +|+++|.++.+...++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999988887754 69999999988776654433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.43 Score=48.42 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=57.5
Q ss_pred EEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceE--Eee-cccCCCCCCCCeeEEEecccccc
Q 005981 278 VMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAF-ATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 278 VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~--~~~-d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
|.||||--|.+..+|.++ .++++|+++.-+..|+...++ .++...+ ... +.+.++- .+..|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCC-CCCCCEEEEecCCHH
Confidence 689999999999999987 799999999999888766554 4543322 222 2444432 223788886654111
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
-....|.+....++..-.|++..
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeC
Confidence 12366666677777777888873
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.3 Score=49.18 Aligned_cols=104 Identities=15% Similarity=0.280 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCchhHH---Hhc-cC-CeEEEeCCcchHHHHHHHHHHHcCCCceEE-eecccCCC---CCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGA---YLL-PR-NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~---~L~-~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d~e~Lp---f~d~sFDlVv 343 (666)
+++.+|||+.+-.|.=+. .|. .. .|++.|.+..-+.... +.+...|+...+. ..|...+| |+. +||-|.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~-~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLK-ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHH-HHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 567899999999984333 333 33 7888998876554433 4555667665443 33544444 444 899998
Q ss_pred ----eccccccc-------cc----------ChHHHHHHHHHhccCCeEEEEEECC
Q 005981 344 ----CSRCRINW-------TR----------DDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 344 ----~s~~l~h~-------~~----------d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
|+...+-+ .. -..++|..+...+++||+++.+|-.
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 44421111 01 0136788888999999999999843
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.65 Score=50.39 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=69.0
Q ss_pred ceeeEeeccccchHHHHHHhhCCCc-eEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~-vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
.+...+|+|+|.|.....|+.+ ++ |=..|...-..-.+.+.. + -|+-|--|.-|-.-| .=|+|+...++.++.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~---~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYL---A-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhh---c-CCcceecccccccCC-CcCeEEEEeecccCC
Confidence 5677999999999999999885 32 222232221111122222 1 446666777777766 335999999999999
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
|. +...+|.-...-|+|||.+|+-|.
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 75 447999999999999999999754
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.79 Score=46.29 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=64.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecccCCC----CCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRLP----YPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~e~Lp----f~d~sFDlVv 343 (666)
..+.+||=+|+-+|+...++++- .+++|++|+....+.. ..+.+|. +...+. | .+.| .--+..|+|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R~Ni~PIL~--D-A~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKRPNIIPILE--D-ARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhCCCceeeec--c-cCCcHHhhhhcccccEEE
Confidence 45689999999999888777764 6999999998775543 5666653 222222 2 2233 1125689998
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 344 ~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+--+ +- +..+.+..++...||+||+++++
T Consensus 151 ~DVA--Qp-~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 151 QDVA--QP-NQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EecC--Cc-hHHHHHHHHHHHhcccCCeEEEE
Confidence 5321 11 22346778899999999987776
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.66 Score=46.57 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchH-----H--HHHHHHHHHcCCCce-EEeecccCCC------
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDV-----H--ENQIQFALERGAPAM-VAAFATRRLP------ 333 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l-----~--~a~~~~a~~rg~~~~-~~~~d~e~Lp------ 333 (666)
+.+.+|+|+=-|.|.|++.+... .|++. .+.++ . ..+...+++....+. ......-.+.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~--~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY--VPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEe--cchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 45689999999999999988765 45444 22222 0 111112222211110 0000111112
Q ss_pred -CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 -YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 -f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+..++|.++... .+| ......+..++++.|||||.+++..|
T Consensus 125 ~~~~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 1223444443222 233 24456889999999999999999876
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.44 Score=52.38 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=63.1
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCC-CC--------------
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFD-TY-------------- 579 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~-~y-------------- 579 (666)
|||++||+|+|+.+|++... .|+.+|. +.+++.+.+ .|+ +.+++.-.+.+. ..
T Consensus 210 vLDl~~G~G~~sl~la~~~~-----~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 210 LLELYCGNGNFTLALARNFR-----RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred EEEEeccccHHHHHHHhhCC-----EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 99999999999999988643 4555553 455555544 344 333333322211 00
Q ss_pred -CCccceEEeccccccCCCCCCH-HHHHHHhhhcccCCeEEEEEeChhH-HHHHHHHHHhcCcEEEEE
Q 005981 580 -PRTYDLLHAAGLFSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 580 -p~tyDliha~~~f~~~~~~c~~-~~~l~E~dRiLRPgG~~ii~d~~~~-~~~~~~i~~~l~W~~~~~ 644 (666)
...||+|-.+ ..|-.+ +.++ ..|++|++.++++-+... .+.++.+.+ .|++...
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v 341 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETL---KLVQAYERILYISCNPETLCENLETLSQ--THKVERF 341 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEE
Confidence 0147888776 234332 3444 344558999999955544 555777764 6887543
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.038 Score=53.24 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=36.2
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|++-|+|.|.++..|+..+ .-...+.|-.|+|||||++=|.
T Consensus 45 dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 6999999999999998764 2358999999999999999986
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.92 Score=48.09 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCeEEEECCCCchhHHHhc-c-----CCeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLL-P-----RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~-~-----~~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
.+++|+=||||.=-++..+. + ..|+++|+++..+..++.-.+...++ ...+...|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 35699999999765544333 2 26889999998776665322212222 2234444555555444689999865
Q ss_pred ccccccc-cChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.. .... .+...+|..+.+.++||..+++..
T Consensus 200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 AL-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hh-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 43 3322 345699999999999999998875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.39 Score=49.67 Aligned_cols=40 Identities=13% Similarity=0.349 Sum_probs=30.2
Q ss_pred CccceEEeccccc--c--CCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 RTYDLLHAAGLFS--V--ESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 ~tyDliha~~~f~--~--~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+-||+|-|-.+=. | +++ -.+-..+.-+.|.|+|||++|+-
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD-~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGD-DGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccEEEEEEeeeeEeccccc-HHHHHHHHHHHHhhCcCcEEEEc
Confidence 6799998864421 2 333 35678899999999999999995
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.69 Score=48.27 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=70.6
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhh----CCCceEEEEeeccCCCCChhHHHhccc---cccc-cccCCC-CCC-C
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVM-HDWCEP-FDT-Y 579 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~-~~~ce~-~~~-y 579 (666)
-.+++..|+. |++.|.|.|++..+|+. .|. |+..-+-.--.....+-..+.|+ +.+. .|.|+. |.. .
T Consensus 34 ~~l~i~pG~~--VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 34 MRLDIRPGSR--VLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHTT--TT-E--EEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHcCCCCCCE--EEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 4466777866 99999999999998874 352 44433322111122222233466 4443 566743 532 2
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcc-cCCeEEEE-EeChhHHHHHHHHHHhcCcEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRML-RPGGHVYI-RDSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiL-RPgG~~ii-~d~~~~~~~~~~i~~~l~W~~ 641 (666)
...+|.|.-+ +.+. -.+|-.+.++| ||||.+.. +=..+.+.++-+.++...|.-
T Consensus 111 ~~~~DavfLD-----lp~P---w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 111 ESDFDAVFLD-----LPDP---WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp TTSEEEEEEE-----SSSG---GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cCcccEEEEe-----CCCH---HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3677876554 3332 37888999999 99999876 566777777777777778864
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.6 Score=44.11 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=91.9
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhc-cccccccccCCCCCCCCCcc----
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPFDTYPRTY---- 583 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~er-Glig~~~~~ce~~~~yp~ty---- 583 (666)
++++.|+- ||=+||-.|.-..++.+- |. |+..-+.|.-...-|.++.+| .++.++.|- .+|.+|
T Consensus 72 ~pi~~g~~--VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA-----~~P~~Y~~~V 143 (231)
T COG1889 72 FPIKEGSK--VLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDA-----RKPEKYRHLV 143 (231)
T ss_pred CCcCCCCE--EEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeeccc-----CCcHHhhhhc
Confidence 34555543 999999999999888765 53 788888887777888999998 778888776 456444
Q ss_pred ---ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE----------eChhHHHHHHHHHHhcCcEEEEEeccCCC
Q 005981 584 ---DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR----------DSIDVMDELQEIGKAMGWHVTLRETAEGP 650 (666)
Q Consensus 584 ---Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~----------d~~~~~~~~~~i~~~l~W~~~~~~~~~~~ 650 (666)
|+|.++ ..++-..+-+...++.-|++||+++|. |..++..+-.+.+..=..++..+-+ =.|
T Consensus 144 e~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~-LeP 217 (231)
T COG1889 144 EKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVD-LEP 217 (231)
T ss_pred ccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEec-cCC
Confidence 555543 333445567888899999999998885 4555554333334444455544322 135
Q ss_pred CCceEEEEEEe
Q 005981 651 HASYRILTADK 661 (666)
Q Consensus 651 ~~~e~~l~~~k 661 (666)
.+..-++|..|
T Consensus 218 ye~DH~~i~~~ 228 (231)
T COG1889 218 YEKDHALIVAK 228 (231)
T ss_pred cccceEEEEEe
Confidence 56666666655
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.14 Score=53.95 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=37.4
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+||..-+..+.+|+..++.-..+|.|+-|.|||||...|.
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 89999999999999988888899999999999999996664
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.1 Score=42.76 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=48.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC--CCCCCeeEEEeccccccccc-----ChH---HHHHHHHH
Q 005981 296 NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCSRCRINWTR-----DDG---ILLLEVNR 364 (666)
Q Consensus 296 ~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp--f~d~sFDlVv~s~~l~h~~~-----d~~---~~L~el~R 364 (666)
+|+|+|+-+..+...+..+....... ..+...+-+++. .+.+.+|+|+.+...+.-.+ .+. .+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 48999999988877765555432222 223322223333 23358999997755444321 122 78899999
Q ss_pred hccCCeEEEEEECCC
Q 005981 365 MLRAGGYFAWAAQPV 379 (666)
Q Consensus 365 vLkPGG~lv~st~P~ 379 (666)
+|+|||.+.+..-++
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999996443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.43 Score=49.57 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCCCCcc
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~yp~ty 583 (666)
.+.+++..+ ..|||+|||.|.+.+.|++++.. |+.++. +.+++.+.++ +-+.+.+.-.+.++. ..|
T Consensus 22 ~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~~-----v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--~~~ 92 (253)
T TIGR00755 22 VEAANVLEG--DVVLEIGPGLGALTEPLLKRAKK-----VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--PDF 92 (253)
T ss_pred HHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCCc-----EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh--hHc
Confidence 344444333 56999999999999999999753 444443 4555555443 114445544333321 356
Q ss_pred c---eEEec
Q 005981 584 D---LLHAA 589 (666)
Q Consensus 584 D---liha~ 589 (666)
| +|.++
T Consensus 93 d~~~~vvsN 101 (253)
T TIGR00755 93 PKQLKVVSN 101 (253)
T ss_pred CCcceEEEc
Confidence 6 66554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.17 E-value=1.7 Score=43.52 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeec----------ccCCCCCCC
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA----------TRRLPYPSQ 337 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d----------~e~Lpf~d~ 337 (666)
.+..+|||+||..|+|+....++ -|.|||+-.. .--.|... +...| .+.| ++.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~p~~Ga~~-i~~~dvtdp~~~~ki~e~l--p~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------EPPEGATI-IQGNDVTDPETYRKIFEAL--PNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------cCCCCccc-ccccccCCHHHHHHHHHhC--CCC
Confidence 45689999999999999877665 6889987532 11122211 11111 1223 567
Q ss_pred CeeEEEeccccccccc----ChH-------HHHHHHHHhccCCeEEEEEE
Q 005981 338 AFDLIHCSRCRINWTR----DDG-------ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 338 sFDlVv~s~~l~h~~~----d~~-------~~L~el~RvLkPGG~lv~st 376 (666)
..|+|++- +...-.. |-. .++.-....++|+|.|++-.
T Consensus 136 ~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 136 PVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred cccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 89999853 3333221 111 23344456788999999985
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.3 Score=44.87 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCc--h----hHHHhcc-CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-------------CC
Q 005981 274 HIRVVMDAGCGVA--S----FGAYLLP-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-------------LP 333 (666)
Q Consensus 274 ~~~~VLDIGCGtG--~----~a~~L~~-~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-------------Lp 333 (666)
..+..||||||-= . .+..... .+|+-+|..|.-+..++.-.+........+...|+.+ +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5678999999954 2 2222232 2899999999766554432222211112333334221 11
Q ss_pred CCCCCeeEEEeccccccccc--ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~--d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
| ++..=+++ ..++++..+ ++..++..+...|-||.+|+++..
T Consensus 148 ~-~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 F-DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp T-TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred C-CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2 23344443 445444433 356999999999999999999954
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.72 Score=52.38 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhcccccCC---CCCCeEEEECCCCchhHHHhcc------C--CeEEEeCCcchHHHHHHHHHHHcCCCce
Q 005981 255 ADQYLDQIAKMVPDITWG---HHIRVVMDAGCGVASFGAYLLP------R--NVITMSIAPKDVHENQIQFALERGAPAM 323 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g---~~~~~VLDIGCGtG~~a~~L~~------~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~ 323 (666)
+++|-+.+.+.|.+.... .....|+-+|+|-|-+.....+ + ++++++-.|..+...+...-..-.....
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vt 424 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVT 424 (649)
T ss_pred HHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeE
Confidence 345555555544433211 2245788999999966544332 2 7899999998664433211111122334
Q ss_pred EEeecccCCCCCCCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEE
Q 005981 324 VAAFATRRLPYPSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 324 ~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~s 375 (666)
+...|+..++-+....|+++ +..+-.+.++ -...|.-+-+.|||+|..+=+
T Consensus 425 ii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 425 IISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 55557888875568899998 4444445333 248999999999999887544
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.36 Score=53.50 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=54.4
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||++||+|.++..++.. ++ -.|+.+|. +..++.+.+ .|+ +.+++.-++.+..-...||+|..+- |
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~----~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~ 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGV----EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C
Confidence 5999999999999999765 42 13444553 344444332 244 2244444333211145799999872 3
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+. ..+|...-+.+||||.++++
T Consensus 135 -----Gs~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCc-HHHHHHHHHHhcCCCEEEEE
Confidence 221 35555546778999999997
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.2 Score=45.99 Aligned_cols=112 Identities=12% Similarity=0.194 Sum_probs=65.5
Q ss_pred cccccCCCCc-cccccHHHHHHHHHhhcccccCC--CCCCeEEEECCCCch----hHHHhccCCeEEEeCCcchHHHHHH
Q 005981 240 DKFKFPGGGT-QFIHGADQYLDQIAKMVPDITWG--HHIRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQI 312 (666)
Q Consensus 240 ~~~~Fpgggt-~F~~g~~~~i~~L~~~L~~i~~g--~~~~~VLDIGCGtG~----~a~~L~~~~V~gvDiS~~~l~~a~~ 312 (666)
.+|.||.|-- -...|...|+..|.++|..-... +...++||||.|.-- ++.+....+.+|.|+++..++.|+.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 3567776531 12356678888888888643211 234579999988652 2222223388999999988888876
Q ss_pred HHHHHcCCCceEE---eeccc----CCCCCCCCeeEEEeccccccc
Q 005981 313 QFALERGAPAMVA---AFATR----RLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 313 ~~a~~rg~~~~~~---~~d~e----~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
......++...+. .-+.. .+--..+.||+++|+--+|.-
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 5554434332111 11111 111225789999998764443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.54 Score=47.66 Aligned_cols=84 Identities=26% Similarity=0.338 Sum_probs=52.2
Q ss_pred EeeccccchHHHHHHh----hCCCceEEEEeeccCC-C--------CChhHH--------HhccccccccccCCCCCCCC
Q 005981 522 VLDMRAGFGGFAAALI----EQKFDCWVMNVVPVSG-F--------NTLPVI--------YDRGLIGVMHDWCEPFDTYP 580 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~----~~~~~vwvmnv~~~~~-~--------~~l~~~--------~erGlig~~~~~ce~~~~yp 580 (666)
.||+|.|+|-..+.++ ..|. |++.++. + |-...+ ++||-+.+.-..| .--|+
T Consensus 86 ~LdvGsGSGYLt~~~~~mvg~~g~-----~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg--r~g~~ 158 (237)
T KOG1661|consen 86 FLDVGSGSGYLTACFARMVGATGG-----NVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG--RKGYA 158 (237)
T ss_pred eeecCCCccHHHHHHHHHhcCCCc-----cccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc--cccCC
Confidence 8999999998655443 3343 3355543 1 222223 4555544443333 33355
Q ss_pred --CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 --RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 --~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.-||-||+. .....+..|+=-.|+|||.++|-
T Consensus 159 e~a~YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQAPYDAIHVG---------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCcceEEEc---------cCccccHHHHHHhhccCCeEEEe
Confidence 889999987 23346777887889999999984
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.5 Score=46.69 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=72.5
Q ss_pred CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCC-C------------CCCCCC
Q 005981 515 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCE-P------------FDTYPR 581 (666)
Q Consensus 515 ~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce-~------------~~~yp~ 581 (666)
..++-|.||=+|.|.||.++++++.+ +|-=+-+|.+| +.-++++ |..++..|.++. + ...++.
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID-~~Vi~~a--r~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEID-PAVIELA--RKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcC-HHHHHHH--HHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 45666899999999999999999996 23333344444 2333433 444555554432 0 122457
Q ss_pred ccceEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE-eC----hhHHHHHHHHHHhcCc
Q 005981 582 TYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR-DS----IDVMDELQEIGKAMGW 639 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~-d~----~~~~~~~~~i~~~l~W 639 (666)
+||+|-.+. ....+.--. -........|.|+|+|.++.. .+ .+.+..+.+.++++.+
T Consensus 149 ~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~ 212 (282)
T COG0421 149 KFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS 212 (282)
T ss_pred cCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc
Confidence 999998761 111111000 147888899999999999997 11 1334455555666633
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.7 Score=48.28 Aligned_cols=119 Identities=22% Similarity=0.238 Sum_probs=76.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCC--CCC---CCC---ccceEE
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEP--FDT---YPR---TYDLLH 587 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~--~~~---yp~---tyDlih 587 (666)
.|||+=|-+|||+-+.+.-|+. .|+.||. ...|+.+.+. |+-+.-|.|-+. |.. +-+ +||+|-
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~----~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGAS----EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCC----ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3999999999999999998872 5666774 4566666553 553333444211 222 223 999999
Q ss_pred ecc-ccccCCCC-----CCHHHHHHHhhhcccCCeEEEEE------eChhHHHHHHHHHHhcCcEEEE
Q 005981 588 AAG-LFSVESKR-----CNMSTIMLEMDRMLRPGGHVYIR------DSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 588 a~~-~f~~~~~~-----c~~~~~l~E~dRiLRPgG~~ii~------d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
.+= .|...++. -+..+++...-+||+|||.+++. +....++.|.+-+..++=..++
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEE
Confidence 752 24433322 23458889999999999999997 3344566666666666443333
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.18 E-value=4.7 Score=40.25 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=68.9
Q ss_pred eeeEeeccccchHHHHHHhhC-CCceEEEE--eeccCCCCChhHHHhccc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ-KFDCWVMN--VVPVSGFNTLPVIYDRGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmn--v~~~~~~~~l~~~~erGl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
...+|++|||.|-..+.|++. +-.+..|- +-|.....|++-|.-.+. |-+. -|....+. +++.|++.-+-=+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCCcC
Confidence 445999999999999999887 21223322 222222456666655544 2222 22211111 24555444322111
Q ss_pred c--------------C---CC-CCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEec
Q 005981 594 V--------------E---SK-RCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 594 ~--------------~---~~-~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
- + .+ |.-+..+|.-++-||-|-|.|++---. ....+|-++++.-+|.+++...
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEE
Confidence 1 1 11 222456677788899999999995322 2344455578888888876543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=87.08 E-value=2.8 Score=45.98 Aligned_cols=139 Identities=15% Similarity=0.253 Sum_probs=67.1
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccc--cccccccCCCCCC-------CC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL--IGVMHDWCEPFDT-------YP 580 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGl--ig~~~~~ce~~~~-------yp 580 (666)
+.++...+ .|||+-||.|.|+-.|+++...|..+.+++..-.+...-+...|+ +..++.-+|.+.. +.
T Consensus 191 ~~l~~~~~---~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~ 267 (352)
T PF05958_consen 191 EWLDLSKG---DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFN 267 (352)
T ss_dssp HHCTT-TT---EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGT
T ss_pred HHhhcCCC---cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHH
Confidence 34444433 489999999999999999865333333332211222233334455 3334433333321 10
Q ss_pred ---------CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEE---ecc
Q 005981 581 ---------RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLR---ETA 647 (666)
Q Consensus 581 ---------~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~---~~~ 647 (666)
..+|+|-.+ ..|..+...+.++ |.++.=.++|+ |+....+.++.+.+ .|++... |.=
T Consensus 268 ~~~~~~~~~~~~d~vilD------PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~~v~~~DmF 337 (352)
T PF05958_consen 268 RLKGIDLKSFKFDAVILD------PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLEKVQPVDMF 337 (352)
T ss_dssp TGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEEEEEEE-SS
T ss_pred hhhhhhhhhcCCCEEEEc------CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEEEEEEeecC
Confidence 145666444 3444444433332 34566678888 66666777777654 6887533 322
Q ss_pred CCCCCceEEEEEEe
Q 005981 648 EGPHASYRILTADK 661 (666)
Q Consensus 648 ~~~~~~e~~l~~~k 661 (666)
.....=|-+.+.+|
T Consensus 338 P~T~HvE~v~lL~r 351 (352)
T PF05958_consen 338 PQTHHVETVALLER 351 (352)
T ss_dssp TTSS--EEEEEEEE
T ss_pred CCCCcEEEEEEEEe
Confidence 22233455555554
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.07 E-value=1.4 Score=49.43 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=66.8
Q ss_pred CCCCeEEEECCCCc--hhHHHhccC----CeEEEeCCcchHHHHHHHHHH--HcCCCceEE-eecccCCCCC-CCCeeEE
Q 005981 273 HHIRVVMDAGCGVA--SFGAYLLPR----NVITMSIAPKDVHENQIQFAL--ERGAPAMVA-AFATRRLPYP-SQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG--~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~--~rg~~~~~~-~~d~e~Lpf~-d~sFDlV 342 (666)
..+..++|+|.|.| .++..+..+ .++.||.+..|+.....+.-. +.|-...-. ..--..+|.. .+.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 34567899988877 344444333 788899998877554433221 112111111 1112456654 3559999
Q ss_pred EecccccccccChH--HHHHH-HHHhccCCeEEEEEECCCCCCHHHHHH
Q 005981 343 HCSRCRINWTRDDG--ILLLE-VNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (666)
Q Consensus 343 v~s~~l~h~~~d~~--~~L~e-l~RvLkPGG~lv~st~P~~~~~~el~~ 388 (666)
+|++.+++...... ....+ ..+..++||++++.........+-+.+
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~e 327 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTE 327 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHH
Confidence 99998888743322 33333 567889999999986433333333333
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=0.5 Score=50.59 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=49.8
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCCC-C--
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTYP-R-- 581 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~yp-~-- 581 (666)
+.+.+..+. .++|++||.||++.++++..-+ .-.|+.+|. +.++..+.+| +-+-++|+....+..+. .
T Consensus 13 ~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~--~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 13 DALAIKPDG--IYVDGTFGGGGHSRAILERLGP--KGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HhhCCCCCC--EEEEeCcCChHHHHHHHHhCCC--CCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 444455554 5999999999999999987200 015777775 6777777665 23667777744443332 2
Q ss_pred -ccceEEec
Q 005981 582 -TYDLLHAA 589 (666)
Q Consensus 582 -tyDliha~ 589 (666)
++|.|.++
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 78888864
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=86.72 E-value=1.4 Score=46.14 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=53.7
Q ss_pred CCCccceEEeccccc-cCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------HHHHHHHHHHhcCcEE
Q 005981 579 YPRTYDLLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------VMDELQEIGKAMGWHV 641 (666)
Q Consensus 579 yp~tyDliha~~~f~-~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------~~~~~~~i~~~l~W~~ 641 (666)
.|+.||.|-+...+. ...++-.....|..|-+.|||||++|+-.-.+ ..+.|++.++.-...+
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEE
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEE
Confidence 356799998775443 24455556689999999999999999962211 1466777788888887
Q ss_pred EEEeccCCC--CCceEEEEEEe
Q 005981 642 TLRETAEGP--HASYRILTADK 661 (666)
Q Consensus 642 ~~~~~~~~~--~~~e~~l~~~k 661 (666)
......... +...-+|+|||
T Consensus 235 ~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 235 EDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEEG-TTTB---EEEEEEEEE
T ss_pred EecccccCcCCCCcEEEEEEeC
Confidence 766542222 34455666666
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.47 E-value=2.4 Score=42.99 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=70.7
Q ss_pred eEeeccccchHHHHHHhhC-C--CceEEEEeeccCCCCChhHHHhcccc---ccccccCCCCCCCCCccceEEecccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSGFNTLPVIYDRGLI---GVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~~~~l~~~~erGli---g~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
.|+|+||--||+.-.++++ | ..|...-+.|++....+.++ +|-| .+....-|.+.. ...|+|-++..=..
T Consensus 48 ~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~~l~~--~~~DvV~sD~ap~~ 123 (205)
T COG0293 48 VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLEALGG--APVDVVLSDMAPNT 123 (205)
T ss_pred EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHHHcCC--CCcceEEecCCCCc
Confidence 4999999999998877776 2 12677777777642222211 1111 000111111111 33687776533211
Q ss_pred CCCC-------CCHHHHHHHhh-hcccCCeEEEEE-----eChhHHHHHHHHHHhcCcEEEEEeccC-CCCCceEEEEEE
Q 005981 595 ESKR-------CNMSTIMLEMD-RMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETAE-GPHASYRILTAD 660 (666)
Q Consensus 595 ~~~~-------c~~~~~l~E~d-RiLRPgG~~ii~-----d~~~~~~~~~~i~~~l~W~~~~~~~~~-~~~~~e~~l~~~ 660 (666)
.+.+ -.+..+.+||- ++|+|||.|+.. +..+.+..+++..+.+ .+..... -....|-.++|.
T Consensus 124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v----~~~KP~aSR~~S~E~y~v~~ 199 (205)
T COG0293 124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKV----KIFKPKASRKRSREIYLVAK 199 (205)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhcee----EEecCccccCCCceEEEEEe
Confidence 1111 01124555555 699999999996 4455566666655544 3332221 124568888886
Q ss_pred e
Q 005981 661 K 661 (666)
Q Consensus 661 k 661 (666)
+
T Consensus 200 ~ 200 (205)
T COG0293 200 G 200 (205)
T ss_pred c
Confidence 5
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.7 Score=42.86 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=65.3
Q ss_pred HHhcccCCCceeeEeeccccchHHH--HHHhhCCCc-----eEEEEeeccCC-CCChhHHHh----ccc---cccccccC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFA--AALIEQKFD-----CWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWC 573 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfa--a~L~~~~~~-----vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~c 573 (666)
.++-+++.+. .|+|==||+|++. |+|...++. . -..+...|. +.++..+.+ .|+ |.+...-.
T Consensus 21 l~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 21 LNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDIN-ELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-C-H--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccc-cccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 4444565554 4999999999987 445444331 0 011234442 344444433 243 33333222
Q ss_pred CCCCCCCCccceEEeccccccCCCCCCH--------HHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 574 EPFDTYPRTYDLLHAAGLFSVESKRCNM--------STIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 574 e~~~~yp~tyDliha~~~f~~~~~~c~~--------~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..++..+.++|.|-++- =++.|... ..++.|+.|+|+|...+++++..+.. +.+....|+...
T Consensus 98 ~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~----~~~~~~~~~~~~ 168 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELE----KALGLKGWRKRK 168 (179)
T ss_dssp GGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHH----HHHTSTTSEEEE
T ss_pred hhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH----HHhcchhhceEE
Confidence 33332347999999983 33334332 37789999999996666666665543 333444776553
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=86.18 E-value=0.57 Score=49.96 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
+..||+|.|..+|.+... -.-..++..+.+.|+|||++++-...
T Consensus 221 ~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 389999999999877643 23469999999999999999886543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=86.11 E-value=0.6 Score=46.56 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=54.2
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCC-CCC--C-CccceEEe
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPF-DTY--P-RTYDLLHA 588 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~-~~y--p-~tyDliha 588 (666)
.|||++||+|++|..++.+|+. .|+-+|. +..++.+.+ -|+ +.++..-...+ ..+ . ..||+|-.
T Consensus 52 ~vLDLfaGsG~lglea~srga~----~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAK----VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCC----EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4999999999999999999863 3555553 233333322 122 22332222111 111 1 24788777
Q ss_pred ccccccCCCCCCHHHHHHHh--hhcccCCeEEEEEeCh
Q 005981 589 AGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSI 624 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~ii~d~~ 624 (666)
+==|.. -..+.++.-+ ..+|+++|.+|+....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 644432 1233333322 4689999999997543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.6 Score=46.16 Aligned_cols=119 Identities=21% Similarity=0.313 Sum_probs=68.4
Q ss_pred HHHHHHhhcccccCC-CCCCeEEEECCCCchhHHHhccC--------CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEee
Q 005981 258 YLDQIAKMVPDITWG-HHIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPA-MVAAF 327 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g-~~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~ 327 (666)
+..+...+++-+.-+ .++.+|||+.+-.|+=+..|.+. .|++=|+++.-++....+. .....+. .+...
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~ 216 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNH 216 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecc
Confidence 345556666543333 56689999999999777666543 5778888876555444343 2111111 11111
Q ss_pred cccCCC---------CCCCCeeEEEecc-c-----------ccc--ccc-------Ch-HHHHHHHHHhccCCeEEEEEE
Q 005981 328 ATRRLP---------YPSQAFDLIHCSR-C-----------RIN--WTR-------DD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 328 d~e~Lp---------f~d~sFDlVv~s~-~-----------l~h--~~~-------d~-~~~L~el~RvLkPGG~lv~st 376 (666)
++...| .....||-|.|-- | +.. |.. .+ -.+|.+-.++||+||.++.||
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 222111 2345699998621 0 000 110 11 167888899999999999997
Q ss_pred C
Q 005981 377 Q 377 (666)
Q Consensus 377 ~ 377 (666)
-
T Consensus 297 C 297 (375)
T KOG2198|consen 297 C 297 (375)
T ss_pred c
Confidence 3
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=85.55 E-value=0.48 Score=43.25 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=27.3
Q ss_pred CeeEEEecccccccc----cC--hHHHHHHHHHhccCCeEEEEEE
Q 005981 338 AFDLIHCSRCRINWT----RD--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 338 sFDlVv~s~~l~h~~----~d--~~~~L~el~RvLkPGG~lv~st 376 (666)
.||+|.|..+ .-|. .| ...+++.+++.|+|||.|++--
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4899998665 3332 22 3379999999999999999973
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=85.41 E-value=3.2 Score=44.90 Aligned_cols=116 Identities=23% Similarity=0.263 Sum_probs=69.1
Q ss_pred CceeeEeeccccchHH--HHHHhhCCCceEEEEeeccCCCCChhHHHh----ccc---cccccccCCCCCCCCCccceEE
Q 005981 517 MKLRNVLDMRAGFGGF--AAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggf--aa~L~~~~~~vwvmnv~~~~~~~~l~~~~e----rGl---ig~~~~~ce~~~~yp~tyDlih 587 (666)
-.-|.|||+|||.|-. -|+.+... .|-.+++.+|.+.|.. ..| |.|.-+--|... .|.-.|+|-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~------~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAK------KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcc------eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEE
Confidence 3446699999999963 44444332 3555666677665532 333 667766666665 589999998
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEE--e-----ChhHHHHHHHHHHhcCcE
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--D-----SIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~--d-----~~~~~~~~~~i~~~l~W~ 640 (666)
+--+=.++-+. .|-..-+...|.|+|.|..+=+ | =.+..--++..-+++-|-
T Consensus 249 SEPMG~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 249 SEPMGYMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred eccchhhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 75322222221 2223334456999999998765 1 122334455566666664
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=85.26 E-value=0.94 Score=41.26 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSI 302 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDi 302 (666)
......|||||+|.+.--|... .-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 4567999999999888777765 5566664
|
; GO: 0008168 methyltransferase activity |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=85.25 E-value=3.3 Score=43.07 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=80.2
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc------c----ccccccccCCC-CCCCCC-ccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------G----LIGVMHDWCEP-FDTYPR-TYD 584 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er------G----lig~~~~~ce~-~~~yp~-tyD 584 (666)
.+-++||=+|.|.|+.++.|++.+ ++--+-++.+| +..++++.+- + -+-+.++-+-. +...++ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD-~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEID-PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES--HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecC-hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 368899999999999999999885 12223344444 2344444321 1 12223222111 233566 999
Q ss_pred eEEeccccccCCCC--CCHHHHHHHhhhcccCCeEEEEE-----eChhHHHHHHHHHHhcCcEEEEEeccCCC--CCceE
Q 005981 585 LLHAAGLFSVESKR--CNMSTIMLEMDRMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETAEGP--HASYR 655 (666)
Q Consensus 585 liha~~~f~~~~~~--c~~~~~l~E~dRiLRPgG~~ii~-----d~~~~~~~~~~i~~~l~W~~~~~~~~~~~--~~~e~ 655 (666)
+|-.+ ++.-.... .--...+..+.|.|+|||.+++. ...+....+.+.+++..-.+.....---. ..-.-
T Consensus 153 vIi~D-~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~ 231 (246)
T PF01564_consen 153 VIIVD-LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWS 231 (246)
T ss_dssp EEEEE-SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEE
T ss_pred EEEEe-CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeeccccee
Confidence 99875 33211110 11148889999999999999996 23345666666777776676654332111 12235
Q ss_pred EEEEEeC
Q 005981 656 ILTADKR 662 (666)
Q Consensus 656 ~l~~~k~ 662 (666)
++++.|.
T Consensus 232 ~~~~s~~ 238 (246)
T PF01564_consen 232 FASASKD 238 (246)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 6666664
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=85.01 E-value=3.6 Score=42.99 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=44.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+.+|+|||||.=-++..+... .++|.|++..+++-.. .+....+.+..+...|...-+ +....|+++..-.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH
Confidence 4689999999999888766544 8999999987765443 333444555555554433322 3567899986544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=4.3 Score=44.02 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.1
Q ss_pred CCceeeEeeccccchHHHHHHhhC
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ 539 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~ 539 (666)
.+.-..|||+|||.|+.+..|+.+
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~ 135 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVH 135 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhh
Confidence 344456999999999998888765
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.3 Score=47.49 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCcc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~ty 583 (666)
+++..+. .|||+|||.|.+..+|++.+. .|+.+|. +.+++.+.++ |+ +.++++....+. + ..|
T Consensus 32 ~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~-----~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~-~~~ 102 (294)
T PTZ00338 32 AAIKPTD--TVLEIGPGTGNLTEKLLQLAK-----KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F-PYF 102 (294)
T ss_pred cCCCCcC--EEEEecCchHHHHHHHHHhCC-----cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c-ccc
Confidence 3444443 599999999999999999865 3455553 4556555442 32 445554432221 1 468
Q ss_pred ceEEec
Q 005981 584 DLLHAA 589 (666)
Q Consensus 584 Dliha~ 589 (666)
|+|.++
T Consensus 103 d~VvaN 108 (294)
T PTZ00338 103 DVCVAN 108 (294)
T ss_pred CEEEec
Confidence 888876
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.69 E-value=6 Score=41.33 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=62.3
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC---CCChhHHHhccc----------cccccccC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG---FNTLPVIYDRGL----------IGVMHDWC 573 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~---~~~l~~~~erGl----------ig~~~~~c 573 (666)
|.++++.+. +.+|||.+|+|+|--|+..+.. +. ||+-.|. ...|+.+.+++. +-.--+|-
T Consensus 77 ~~~~~g~~~-~~~~vlELGsGtglvG~~aa~~~~~-----~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg 150 (248)
T KOG2793|consen 77 TATLIGFKT-KYINVLELGSGTGLVGILAALLLGA-----EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWG 150 (248)
T ss_pred hhccccccc-cceeEEEecCCccHHHHHHHHHhcc-----eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecC
Confidence 445555443 7889999999988555444443 33 4443332 234444443332 22225676
Q ss_pred CC--CCCCCCc-cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 574 EP--FDTYPRT-YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 574 e~--~~~yp~t-yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
++ .+.++.. +|+|-++++|-..+..|.+..+|. -.|--+|.+++
T Consensus 151 ~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla---~ll~~~~~i~l 197 (248)
T KOG2793|consen 151 NALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLA---FLLAKDGTIFL 197 (248)
T ss_pred CcccHhhccCCcccEEEEeeeeecCCcchhHHHHHH---HHHhcCCeEEE
Confidence 66 3446555 999999999988887765554444 45667775555
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.2 Score=43.50 Aligned_cols=114 Identities=20% Similarity=0.433 Sum_probs=70.5
Q ss_pred eeEeeccccchHHHHHHhhCCCc---eEEEEeeccCCCCChhHHHhccccccc--------cccCCCCCC-CCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFD---CWVMNVVPVSGFNTLPVIYDRGLIGVM--------HDWCEPFDT-YPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~---vwvmnv~~~~~~~~l~~~~erGlig~~--------~~~ce~~~~-yp~tyDlih 587 (666)
|-||.+|+|+-|.|.-|+...++ ||+..--.. +-..++-|.-+....-+ |.| .+.+. --.|||+|-
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~-svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEE-SVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHH-HHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEE
Confidence 56999999999999999876443 444211110 12445555555531111 222 11111 127999999
Q ss_pred eccccccCCCCCCH-----HHHHHHhhhcccCCeEEEEEeCh--hHHHHHHHHHHhcCcEEEE
Q 005981 588 AAGLFSVESKRCNM-----STIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 588 a~~~f~~~~~~c~~-----~~~l~E~dRiLRPgG~~ii~d~~--~~~~~~~~i~~~l~W~~~~ 643 (666)
|+ .|.+ ++++.-|.+.|||.|..++..+. +.+++....+......+..
T Consensus 109 aA--------DClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 AA--------DCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred ec--------cchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 98 4543 48899999999999999886442 4566666666666655544
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.40 E-value=13 Score=38.27 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
.+..+++.+.. ..++.||||-.|.+..+|.+. .+++.|+++.-+..|..++.+.. +...+.+.-.+.++
T Consensus 6 RL~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~ 78 (226)
T COG2384 6 RLTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA 78 (226)
T ss_pred HHHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc
Confidence 45566666652 244999999999999999876 78999999999888876665544 33323222123333
Q ss_pred -CC-CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 334 -YP-SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 334 -f~-d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+. +..+|+|+...+.-. -....|.+-...|+.==.+++.
T Consensus 79 ~l~~~d~~d~ivIAGMGG~---lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 79 VLELEDEIDVIVIAGMGGT---LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred ccCccCCcCEEEEeCCcHH---HHHHHHHHhhhhhcCcceEEEC
Confidence 33 347999886554111 1236677777777644456664
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.19 E-value=4.1 Score=44.43 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=72.7
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc--cc--cc--cccCCC-CCCCC-
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL--IG--VM--HDWCEP-FDTYP- 580 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl--ig--~~--~~~ce~-~~~yp- 580 (666)
++-.+..|.. |||==||+|||.-...=.|+ +|+..|- ..|+.-| ..+| .+ -| +.-|.+ ...+|
T Consensus 191 NLa~v~~G~~--vlDPFcGTGgiLiEagl~G~-----~viG~Did~~mv~ga-k~Nl~~y~i~~~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 191 NLARVKRGEL--VLDPFCGTGGILIEAGLMGA-----RVIGSDIDERMVRGA-KINLEYYGIEDYPVLKVLDATNLPLRD 262 (347)
T ss_pred HHhccccCCE--eecCcCCccHHHHhhhhcCc-----eEeecchHHHHHhhh-hhhhhhhCcCceeEEEecccccCCCCC
Confidence 3333455544 99999999999877666676 7777764 3444332 2223 21 11 222222 22266
Q ss_pred CccceEEeccccccCC--CCCC----HHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 581 RTYDLLHAAGLFSVES--KRCN----MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 581 ~tyDliha~~~f~~~~--~~c~----~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
.++|.|-++-=..... .+-. +.++|-++.++|++||++++.-+.....++.+ +.+++..
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~----~~f~v~~ 327 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE----LGFKVLG 327 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh----cCceEEE
Confidence 4699999874333211 1222 45888999999999999999766444444444 4555543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=83.88 E-value=2.2 Score=43.58 Aligned_cols=112 Identities=15% Similarity=0.286 Sum_probs=73.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCC-CCCCC-CccceEEeccccccCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP-FDTYP-RTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~-~~~yp-~tyDliha~~~f~~~~~~ 598 (666)
.+||+||=....+.. ..+ | .+|+++|-..+-+-|.+.-+ .|. .++=+ ..||+|.++-|+....+.
T Consensus 54 rlLEVGals~~N~~s--~~~---~-fdvt~IDLns~~~~I~qqDF-------m~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 54 RLLEVGALSTDNACS--TSG---W-FDVTRIDLNSQHPGILQQDF-------MERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred eEEeecccCCCCccc--ccC---c-eeeEEeecCCCCCCceeecc-------ccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 589999975543322 222 3 35999986444444444333 222 23223 689999999888876654
Q ss_pred CCHHHHHHHhhhcccCCeE-----EEEE-------eChh-HHHHHHHHHHhcCcEEEEEe
Q 005981 599 CNMSTIMLEMDRMLRPGGH-----VYIR-------DSID-VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 599 c~~~~~l~E~dRiLRPgG~-----~ii~-------d~~~-~~~~~~~i~~~l~W~~~~~~ 645 (666)
-.--+.+.-+.+.|||+|. ++|- .+.. ..+.++.|+.+|+.......
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 3345888999999999999 5553 1111 25789999999999876553
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.80 E-value=1.5 Score=43.86 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=60.8
Q ss_pred eEeeccccchHHHHHHhhCC-CceEEEEeeccCCCCChhHH---HhccccccccccCCCCCCCCCccceEEeccccccCC
Q 005981 521 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSGFNTLPVI---YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~~~~l~~~---~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
.|+|+|||+|.+|-+.+-.| ..|..+.+-| ..++++ .++++ |-+---|-..+.+..-+|.+-.+==|....
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~----~a~ei~r~N~~~l~-g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDP----EALEIARANAEELL-GDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCH----HHHHHHHHHHHhhC-CceEEEEcchhhcCCccceEEECCCCcccc
Confidence 49999999999876666665 2233333333 344333 33433 212112222455667888887777777665
Q ss_pred CCCCHHHHH--HHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEE
Q 005981 597 KRCNMSTIM--LEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 597 ~~c~~~~~l--~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~ 642 (666)
..-+.+.+. +|+- -+|.+ .+....+-+++.+......+.
T Consensus 123 rhaDr~Fl~~Ale~s-------~vVYsiH~a~~~~f~~~~~~~~G~~v~ 164 (198)
T COG2263 123 RHADRPFLLKALEIS-------DVVYSIHKAGSRDFVEKFAADLGGTVT 164 (198)
T ss_pred ccCCHHHHHHHHHhh-------heEEEeeccccHHHHHHHHHhcCCeEE
Confidence 556666544 3433 23333 444456666666666654443
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.37 E-value=5.9 Score=41.39 Aligned_cols=102 Identities=21% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCeEEEECCCCchhHHHhcc---CCeEEEeCCcchH--HHHH-H-HHHH-HcCCCceEEeecc-cCC--CCCCCC-eeEE
Q 005981 275 IRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDV--HENQ-I-QFAL-ERGAPAMVAAFAT-RRL--PYPSQA-FDLI 342 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l--~~a~-~-~~a~-~rg~~~~~~~~d~-e~L--pf~d~s-FDlV 342 (666)
..+||++|.|+|..+...+. .+|...|...... .... . +.+. ..|....+...+- ..+ .+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 46799999999954443332 2666666654321 1110 0 1111 1121222222211 111 111223 9999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++.++.+- ...+.++.-+...|-.+|.+++.++
T Consensus 167 lasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 999986665 6667888889999999997777754
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.22 E-value=0.46 Score=50.19 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHhhc-ccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHH-----------HHHHHHHH
Q 005981 253 HGADQYLDQIAKMV-PDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHE-----------NQIQFALE 317 (666)
Q Consensus 253 ~g~~~~i~~L~~~L-~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~-----------a~~~~a~~ 317 (666)
.++-..++.+.+.+ .++. ..+++|||+|||.|.-+...... .+...|++..-+.. +..+....
T Consensus 96 ecS~dl~~~l~~e~~~~~~--~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~ 173 (282)
T KOG2920|consen 96 ECSVDLLPYLKEEIGAQMS--FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN 173 (282)
T ss_pred ecHHHHHHHHHHHhhhheE--ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhc
Confidence 34444455555443 2211 34589999999999555444322 45555655432200 00011111
Q ss_pred cCCCceEEeecccCCCC-CCC--CeeEEEecccccccccChHHH-HHHHHHhccCCeEEEEEE
Q 005981 318 RGAPAMVAAFATRRLPY-PSQ--AFDLIHCSRCRINWTRDDGIL-LLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 318 rg~~~~~~~~d~e~Lpf-~d~--sFDlVv~s~~l~h~~~d~~~~-L~el~RvLkPGG~lv~st 376 (666)
......... ...++-+ ..+ .||+|.++..+... .....+ +......++++|.++++.
T Consensus 174 ~~~~~i~~s-~l~dg~~~~t~~~~ydlIlsSetiy~~-~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 174 HKVDEILNS-LLSDGVFNHTERTHYDLILSSETIYSI-DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccceecccc-ccccchhhhccccchhhhhhhhhhhCc-chhhhhHhhhhhhcCCccchhhhhh
Confidence 111000000 0001111 112 68888877765555 333333 666778888999887764
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=82.64 E-value=0.23 Score=44.11 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=33.1
Q ss_pred eeccccchHHHHHHhhCCCceEEEEeeccCC-C---CChhHHHhccc---cccccccCCC-CCCCC-CccceEEeccccc
Q 005981 523 LDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-F---NTLPVIYDRGL---IGVMHDWCEP-FDTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 523 lD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~---~~l~~~~erGl---ig~~~~~ce~-~~~yp-~tyDliha~~~f~ 593 (666)
|.+|+..|..+..|++.=.+.-...+..+|. + ...+++.+.++ +-+....... ++.++ +.||+|+-++ .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 5688888887777765300000012333332 1 33444444455 4444444221 33455 8999999883 1
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|. ......-+..+-+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1223456667778899999999876
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.89 E-value=1.8 Score=50.95 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=7.5
Q ss_pred cCcchhcccccc
Q 005981 231 GQNWISKEKDKF 242 (666)
Q Consensus 231 ~q~W~~~~g~~~ 242 (666)
.-.|++...+++
T Consensus 642 ~cFWvkv~Edk~ 653 (1102)
T KOG1924|consen 642 NCFWVKVNEDKL 653 (1102)
T ss_pred cceeeecchhhc
Confidence 456777666655
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.79 E-value=13 Score=38.90 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCeEEEECCCCchhHHHhccC--------CeEEEeCCcchHHHHHHHHHHHc-CCCceEEeec----ccCCCCCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALER-GAPAMVAAFA----TRRLPYPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d----~e~Lpf~d~sFDl 341 (666)
..+.+|+|.|+..=++.|.+. +.+.+|++..-+.....+...+. +++..-...+ ...+| ...--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 578999999999766666542 78999999987776655555544 3332222222 22333 222223
Q ss_pred E-EecccccccccCh-HHHHHHHHHhccCCeEEEEEE
Q 005981 342 I-HCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 V-v~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st 376 (666)
+ +....+-.+.++. ..+|.++..+|+||-+|++..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2 2233334444333 378999999999999999975
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=81.72 E-value=0.88 Score=44.39 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCeeEEEecccccccc----cCh------HHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWT----RDD------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~----~d~------~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++||.+.|..++.|.. .|+ ...+.++.++||+||.|+++.+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999887776753 111 2789999999999999999965
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=4.7 Score=42.71 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HhccccccccccCCC-CCCCC-CccceEEeccccccCCCCCCH-------------HHHHHHhhhcccCCeEEEEEeChh
Q 005981 561 YDRGLIGVMHDWCEP-FDTYP-RTYDLLHAAGLFSVESKRCNM-------------STIMLEMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 561 ~erGlig~~~~~ce~-~~~yp-~tyDliha~~~f~~~~~~c~~-------------~~~l~E~dRiLRPgG~~ii~d~~~ 625 (666)
++-+..-+++.-|.. +..+| .+||||.++==|....+..+. ..+|.|+.|+|||||.++|--...
T Consensus 4 ~~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 4 FGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred ccCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Q ss_pred HHHHHHHHHHh---cCcEEEEEeccCC-------CCCceEEEEEEeC
Q 005981 626 VMDELQEIGKA---MGWHVTLRETAEG-------PHASYRILTADKR 662 (666)
Q Consensus 626 ~~~~~~~i~~~---l~W~~~~~~~~~~-------~~~~e~~l~~~k~ 662 (666)
.+..+..+++. +.-.+.-.....+ ....|-||++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~K~ 130 (284)
T PRK11524 84 NMPFIDLYCRKLFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKD 130 (284)
T ss_pred hhhHHHHHHhcCcceEEEEEEEeCCCCCcccCcCCCCccEEEEEEcC
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=81.11 E-value=4.9 Score=42.50 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=68.0
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceE--EEEeeccCC-CCChhHHHh--ccccccccc-cCCCCCC--CC-CccceEEe
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCW--VMNVVPVSG-FNTLPVIYD--RGLIGVMHD-WCEPFDT--YP-RTYDLLHA 588 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vw--vmnv~~~~~-~~~l~~~~e--rGlig~~~~-~ce~~~~--yp-~tyDliha 588 (666)
+-+.|||.|||.|...-|..+. | .-.++-+|. +.+++++.. ++.....+. |-+.+.. -+ ...|||-+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~----~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREV----WPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHH----hcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEE
Confidence 4567999999999766555543 3 234555663 455544322 222222222 2111111 01 23499999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----hhHHHHHHHHHHhcCcEEEE
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----~~~~~~~~~i~~~l~W~~~~ 643 (666)
+++++.+.. -....++..+=+-+.+ ++||=+. -+.+.++++.+....+.+..
T Consensus 109 s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 109 SYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred ehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 999987766 4455666666454555 7777543 34577777777666665544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=80.84 E-value=20 Score=39.78 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCCc----hhHHHhccC-------CeEEEeC----CcchHHHHH---HHHHHHcCCCceEEee---cccC
Q 005981 273 HHIRVVMDAGCGVA----SFGAYLLPR-------NVITMSI----APKDVHENQ---IQFALERGAPAMVAAF---ATRR 331 (666)
Q Consensus 273 ~~~~~VLDIGCGtG----~~a~~L~~~-------~V~gvDi----S~~~l~~a~---~~~a~~rg~~~~~~~~---d~e~ 331 (666)
.+.-.|+|+|.|.| .+...|+.+ +||+++. +...+++.. .++|+..|++-.+... ..+.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~ 188 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLED 188 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhh
Confidence 34468999999999 566666665 8999998 444444433 3667777877655442 2233
Q ss_pred C-----CCCCCCeeEEEecccccccccC------hHHHHHHHHHhccCCeEEEEE
Q 005981 332 L-----PYPSQAFDLIHCSRCRINWTRD------DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 L-----pf~d~sFDlVv~s~~l~h~~~d------~~~~L~el~RvLkPGG~lv~s 375 (666)
+ ...++..=+|-|...++|...+ +...+-...|.|+|.-..+.-
T Consensus 189 l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 189 LDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 2 2233444344455555666422 334566777899999666554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.32 E-value=2 Score=44.28 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCeEEEECCCCchhHHHhccC-------------CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC--------C
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-------------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--------P 333 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-------------~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L--------p 333 (666)
..+++|+.+..|+|+..|.++ .|++||+-+.. --.|+ .....|+... -
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI~GV--~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PIEGV--IQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------ccCce--EEeecccCCHhHHHHHHHH
Confidence 468999999999998877542 38999986521 11111 1112222211 1
Q ss_pred CCCCCeeEEEeccc-----ccccccChH-----HHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRC-----RINWTRDDG-----ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~-----l~h~~~d~~-----~~L~el~RvLkPGG~lv~st 376 (666)
|....-|+|+|-.+ +|.+.+..+ .+|.-...+|||||.|+---
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 45567899998543 233321111 44556678999999997763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 666 | |||
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 1e-07 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 3e-07 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 1e-06 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 4e-06 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 4e-06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 1e-05 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 1e-05 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-05 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 2e-05 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 4e-05 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 4e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 4e-05 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 8e-05 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 1e-04 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 2e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 3e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 3e-04 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 4e-04 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 4e-04 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 5e-04 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 5e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 6e-04 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 7e-04 |
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 25/151 (16%)
Query: 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVHENQ 311
A ++ KM+PD + V+D GCG Y + V+ + D+ E
Sbjct: 29 AAGEWHELKKMLPDFN----QKTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERM 79
Query: 312 IQFALERGAPAMVAAFA--TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAG 369
+ A + +V + A++++ S +++ + +V L++
Sbjct: 80 LTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSS 138
Query: 370 GYF----------AWAAQPVYKHEEAQEEHW 390
G F A Q Y E + HW
Sbjct: 139 GSFIFSVEHPVFTADGRQDWYTDETGNKLHW 169
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 250 QFIHGADQYLDQ--IAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PRNVITMSIAP 304
+ I G D + + M+P++ G ++D GCG F + V+ +
Sbjct: 21 RSIEGLDGAAEWPALRAMLPEVG-GLR---IVDLGCGFGWFCRWAHEHGASYVLGL---- 72
Query: 305 KDVHENQIQFALERGAPAMVA---AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLE 361
D+ E + A G + A + L P +FDL + S +++ D L
Sbjct: 73 -DLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLA-LHYVEDVARLFRT 129
Query: 362 VNRMLRAGGYFAWAAQ-PVYKHEEAQEEHWKE 392
V++ L GG+F ++ + P+Y
Sbjct: 130 VHQALSPGGHFVFSTEHPIYMAPARPGWAIDA 161
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 278 VMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335
V+D G G + +L R V+ + D + ++ A E+G +V A A LP+P
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLV-----DPSKEMLEVAREKGVKNVVEAKA-EDLPFP 111
Query: 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390
S AF+ + +++ + E+ R+L G Y + E
Sbjct: 112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKD 166
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMV-AAFAT---RRLP 333
V+D CGV F L + + D+ E+ I+ A E F R+L
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLS 98
Query: 334 YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 392
+ + FD + +++ + + EV R+L+ G F + + +E
Sbjct: 99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVV 158
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 18/156 (11%)
Query: 228 DKGGQNWISKEKDKFKFPGGGTQFIHGAD-QYLDQIAKMVPDITWGHHIRVVMDAGCGVA 286
K + W + GG +H D + +P GH +D G G+
Sbjct: 51 GKALEYWRTVPATVSGVLGGMDH-VHDVDIEGSRNFIASLP----GHGTSRALDCGAGIG 105
Query: 287 SFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT---RRLPYPSQAFD 340
LL + + + ++ ++ A A V F P +D
Sbjct: 106 RITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160
Query: 341 LIHCSRCRINWTRDDGILLL-EVNRMLRAGGYFAWA 375
LI I T D + + L GY +
Sbjct: 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 16/155 (10%)
Query: 277 VVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS 336
V++D GCG + YLL I D++ ++ E+ + + P
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCI---DINVIALKEVKEKFDSVITLSDP---KEIPD 73
Query: 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA---WAAQ-----PVYKHEEAQEE 388
+ D I + + D ++ EV R+L+ G W + P +++
Sbjct: 74 NSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKD 132
Query: 389 HWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCY 423
+ + + + + K+ T+ +
Sbjct: 133 YMGWFSNFVVEKRFNPTPYH-FGLVLKRKTSEGHH 166
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 5/125 (4%)
Query: 276 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335
V+ D G G + L + + ++ + Q A+ +A L P
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAEN-LALP 91
Query: 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395
++ D + I+ E+ R++R G +++ + +
Sbjct: 92 DKSVDGVISILA-IHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
Query: 396 LTTRL 400
R
Sbjct: 151 DALRF 155
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 33/179 (18%)
Query: 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPK------- 305
G+ + + + ++T + D GCG G T+ +A
Sbjct: 28 PGSPEATRKAVSFINELTDDAK---IADIGCGT---GG-------QTLFLADYVKGQITG 74
Query: 306 -DVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRCRINWTRDDGIL 358
D+ + I+ E A A LP+ ++ DLI S I +
Sbjct: 75 IDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIW-SEGAI-YNIGFERG 132
Query: 359 LLEVNRMLRAGGYFA---WAAQPVYKHEEAQEEHWKEMLDLTT-RLCWELVKKEGYIAI 413
+ E ++ L+ GG+ A + + E ++ +++ C + +++ GY
Sbjct: 133 MNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPT 191
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 278 VMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRL 332
V+D GCG L + + D+ E IQ ERG + + L
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGV-----DISEVMIQKGKERGEGPDLSFIKGDLSS-L 110
Query: 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 392
P+ ++ F+ I + WT + L E+ R+L++ GY A + + +E +
Sbjct: 111 PFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAI--LGPTAKPRENSYPR 167
Query: 393 MLD 395
+
Sbjct: 168 LYG 170
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 37/193 (19%)
Query: 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPK-------- 305
G+ + + + ++T + D GCG G TM +A
Sbjct: 29 GSPEVTLKALSFIDNLTEKSL---IADIGCGT---GG-------QTMVLAGHVTGQVTGL 75
Query: 306 DVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRCRINWTRDDGILL 359
D I + + T LP+ ++ DLI N + G L
Sbjct: 76 DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERG--L 133
Query: 360 LEVNRMLRAGGYFA--WAAQPVYKHEEAQEEHWK----EMLDLTTRLCWELVKKEGYIAI 413
E + L+ GGY A + + + W E+ + ++ + K GY+ +
Sbjct: 134 NEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQV--AKIHKAGYLPV 191
Query: 414 WKKPTNNSCYLNR 426
+C+ +
Sbjct: 192 ATFILPENCWTDH 204
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 13/137 (9%)
Query: 278 VMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAA-FAT---R 330
V+D G G + + ++ + Q++ A + R
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGI-----EISDLQLKKAENFSRENNFKLNISKGDIR 81
Query: 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLL-EVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389
+LP+ ++ ++ + ++D + E+ R+L+ GG + E
Sbjct: 82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEK 141
Query: 390 WKEMLDLTTRLCWELVK 406
E L +++
Sbjct: 142 IGEGEFLQLERGEKVIH 158
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER--GAPAMVAAFATRRLPYP 335
++D G G + +L + + ++ A + L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTHPSVTFHHGTI--TDLSDS 99
Query: 336 SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFA 373
+ + + I+ + L+ + + GG
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-05
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVH 308
I+ + ++L + + P+ T +D G G+ LL R V + I +
Sbjct: 60 INSSRKFLQRFLREGPNKT---GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLV 116
Query: 309 ENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLL-EVNRMLR 367
+ + E + ++D+I + T L LR
Sbjct: 117 QAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR 176
Query: 368 AGGYFA 373
G
Sbjct: 177 PNGIIV 182
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS 336
++DAGCG G YL + + D+ I +A + A V
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT---DLDPILIDYAKQDFPEARWVVGDL-SVDQISE 105
Query: 337 QAFDLIHCSRCRINWTRDDGIL--LLEVNRMLRAGGYF 372
FDLI + + + +DG L ++R L A G
Sbjct: 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRA 143
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 23/143 (16%)
Query: 242 FKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NV- 297
++ G D+ D++ ++ D+ G V+D GCG+ L V
Sbjct: 33 WEDAGADVSVDDATDRLTDEMIALL-DVRSGDR---VLDVGCGIGKPAVRLATARDVRVT 88
Query: 298 -ITMSIAPKDVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRCRIN 350
I++S Q+ A R A +A T LP+ +FD + +
Sbjct: 89 GISIS-------RPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHH 141
Query: 351 WTRDDGILLLEVNRMLRAGGYFA 373
D G L E+ R+LR GG A
Sbjct: 142 M-PDRGRALREMARVLRPGGTVA 163
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 20/166 (12%)
Query: 249 TQFIHG-----ADQYLDQIAKMVPDITWGHHIR---VVMDAGCGVASFGAYLLPRNVITM 300
T+++HG A + +Q + + V++AGCG+ + +L +N
Sbjct: 4 TEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQ-TVILAKNNPDA 62
Query: 301 SIAPKDVHENQIQFALERGAPAMVAAFATRR-----LPYPSQAFDLIHCSRCRINWTRDD 355
I D+ ++ A E + + LP+ +FD I + +
Sbjct: 63 EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV-LEHLQSP 121
Query: 356 GILLLEVNRMLRAGGYFA-----WAAQPVYKHEEAQEEHWKEMLDL 396
L + ++L+ GG + + + E W ++ +
Sbjct: 122 EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRV 167
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (7%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAF---ATRRLPY 334
V+D GCG L R + + + D + A GA + A
Sbjct: 56 VLDLGCGEGWLLRALADRGIEAVGV---DGDRTLVDAARAAGAGEVHLASYAQLAEAKVP 112
Query: 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ-PVYKHEEAQEEHWKE 392
+ +DLI C+ + D LL + +L GG P + ++ W+E
Sbjct: 113 VGKDYDLI-CANFALLHQ-DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWRE 169
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS 336
+++ G G + L + + + + R A V A+ LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEA-LPFPG 93
Query: 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373
++FD++ + + D +LLE R+LR GG
Sbjct: 94 ESFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 276 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335
V+D GCG + + DV + I+ A +R ++ RLP+
Sbjct: 87 TAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRYPQVTFCVASSHRLPFS 145
Query: 336 SQAFDLIHCSRCRIN------WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388
+ D I + G ++ V+ H E+
Sbjct: 146 DTSMDAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQ 204
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 26/202 (12%)
Query: 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317
Y KM+ + G +V D GCG + + I D+ I+ A
Sbjct: 21 YPSDFYKMIDEYHDGERKLLV-DVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79
Query: 318 RGAPAMVAAFATR-------------RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR 364
+ Q D+I C +W D
Sbjct: 80 IKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVEC-AHWF-DFEKFQRSAYA 137
Query: 365 MLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYL 424
LR G A ++ + + + E DL + + Y W++P L
Sbjct: 138 NLRKDGTIA-----IWGYADPIFPDYPEFDDLMIEVPYGKQGLGPY---WEQPGR--SRL 187
Query: 425 NREAGTIPPLCDPDDNPDNVWY 446
+ + ++
Sbjct: 188 RNMLKDSHLDPELFHDIQVSYF 209
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 27/168 (16%)
Query: 242 FKFPGGGTQFIHGADQYLDQIAKMV---PDITWGHHIRVVMDAGCGVASFGAYLLPR--- 295
+K P + + + + +A + + +D G G +L+ +
Sbjct: 50 YKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAK---GLDLGAGYGGAARFLVRKFGV 106
Query: 296 NV--ITMSIAPKDVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRC 347
++ + ++ Q + E A +A T +P ++D I S+
Sbjct: 107 SIDCLNIA-------PVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI-WSQD 158
Query: 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395
+ D + E R+L+ G A K + + + +LD
Sbjct: 159 AFLHSPDKLKVFQECARVLKPRGVMAITD--PMKEDGIDKSSIQPILD 204
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPS 336
+++ GCG +L + D A R G P F +L
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLF--HQLD-AI 100
Query: 337 QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFA 373
A+D + C ++ RD+ +L + R L+ GG F
Sbjct: 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 18/146 (12%)
Query: 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331
D GCG + L R + + D ++ ++ A +R
Sbjct: 35 LNGYDLGCGPGNSTELLTDRYGVNVITGI-----DSDDDMLEKAADRLPNTNFGKADLAT 89
Query: 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW-------AAQPVYKHEE 384
P+Q DL++ + W D +L ++ L +GG A + HE
Sbjct: 90 WK-PAQKADLLYANAV-FQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHET 147
Query: 385 AQEEHWKEMLDLTTRLCWELVKKEGY 410
A WK+ L Y
Sbjct: 148 ADGGPWKDAFSGGGLRRKPLPPPSDY 173
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 26/136 (19%)
Query: 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFA 315
+ + + ++DAGCG R V ++++ Q F
Sbjct: 105 AEFLMDHLGQAGPDDT---LVDAGCGRGGSMVMAHRRFGSRVEGVTLSA-----AQADFG 156
Query: 316 LERGAPAMVAAFAT------RRLPYPSQAFDLIHC--SRCRINWTRDDGILLLEVNRMLR 367
R + P+ A S ++ L E +R L+
Sbjct: 157 NRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHD----LFSEHSRFLK 212
Query: 368 AGGYFA---WAAQPVY 380
GG + P Y
Sbjct: 213 VGGRYVTITGCWNPRY 228
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYP- 335
V++AGCG A P+ + D ++ A A + LP
Sbjct: 52 VLEAGCGHGPDAARFGPQAARWAAY---DFSPELLKLARANAPHADVYEWNGKGELPAGL 108
Query: 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395
F LI R + +L + + +F +Y E L
Sbjct: 109 GAPFGLIVSRRGPTSV-------ILRLPELAAPDAHF------LYVGPRLNVPEVPERLA 155
Query: 396 LTTRLCWELVKKEGYIAIWKKPT 418
W++V ++ + PT
Sbjct: 156 AVG---WDIVAEDHVSVLAHAPT 175
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 35/158 (22%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
V+D GC + GA + I + + A E+ ++ T +PY +
Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIETMDMPYEEE 92
Query: 338 AFDLIHCS--------------RCRINWTRDDGILLLEV-NRMLRA------GGYFAWAA 376
FD + + + + + +G++L + N + G + +
Sbjct: 93 QFDCVIFGDVLEHLFDPWAVIEKVK-PYIKQNGVILASIPNVSHISVLAPLLAGNWTYTE 151
Query: 377 QPVYKHEEAQEEHWK-----EMLDLTTRLCWELVKKEG 409
+ H + EML + + + + K +
Sbjct: 152 YGLLDK-----THIRFFTFNEMLRMFLKAGYSISKVDR 184
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 666 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.53 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.5 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.5 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.49 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.48 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.48 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.47 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.47 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.47 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.46 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.45 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.44 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.44 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.44 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.43 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.43 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.42 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.42 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.41 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.41 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.4 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.4 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.4 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.39 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.39 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.39 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.39 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.38 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.38 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.38 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.38 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.37 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.37 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.37 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.37 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.37 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.37 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.37 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.37 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.37 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.37 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.36 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.36 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.36 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.35 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.35 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.34 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.34 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.34 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.33 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.33 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.33 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.32 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.32 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.31 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.3 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.3 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.28 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.28 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.28 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.28 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.28 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.27 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.27 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.27 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.27 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.27 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.26 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.25 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.25 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.24 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.24 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.24 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.23 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.22 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.22 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.21 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.21 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.21 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.2 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.2 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.19 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.18 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.17 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.17 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.17 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.17 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.17 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.17 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.17 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.16 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.16 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.16 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.15 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.14 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.14 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.14 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.14 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.14 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.14 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.13 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.12 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.12 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.11 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.11 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.1 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.1 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.1 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.1 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.1 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.1 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.08 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.08 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.08 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.08 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.08 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.08 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.07 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.07 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.07 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.07 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.06 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.06 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.06 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.06 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.05 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.04 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.04 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.04 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.04 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.04 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.03 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.03 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.03 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.03 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.03 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.02 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.02 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.02 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.02 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.02 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.02 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.02 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.01 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.01 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.0 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.0 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.0 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.99 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.99 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.99 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.98 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.98 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.98 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.98 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.98 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.97 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.97 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.97 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.97 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.97 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.97 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.97 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.96 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.96 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.96 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.96 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.96 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.96 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.96 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.96 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.95 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.95 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.95 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.95 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.95 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.94 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.93 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.93 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.93 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.93 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.93 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.93 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.93 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.92 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.92 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.92 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.91 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.91 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.91 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.91 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.91 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.91 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.9 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.9 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.9 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.9 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.9 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.89 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.89 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.89 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.89 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.89 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.89 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.89 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.88 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.88 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.88 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.88 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.88 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.87 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.87 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.87 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.87 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.87 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.87 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.86 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.86 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.86 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.86 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.85 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.85 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.84 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.84 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.84 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.84 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.83 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.83 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.83 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.83 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.83 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.82 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.82 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.82 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.82 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.82 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.82 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.82 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.82 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.82 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.81 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.81 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.81 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.81 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.81 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.81 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.8 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.8 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.8 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.8 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.8 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.79 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.79 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.79 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.78 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.78 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.78 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.78 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.78 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.78 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.78 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.78 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.77 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.77 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.77 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.77 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.77 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.76 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.76 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.76 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.75 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.75 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.75 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.74 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.74 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.73 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.73 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.73 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.72 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.72 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.72 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.72 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.71 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.71 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.71 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.71 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.71 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.71 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.7 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.7 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.7 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.7 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.69 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.69 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.68 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.68 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.68 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.68 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.68 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.67 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.66 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.66 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.66 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.65 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.65 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.65 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.64 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.64 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.64 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.64 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.64 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.64 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.64 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.62 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.62 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.62 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.62 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.62 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.61 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.61 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.61 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.61 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.61 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.61 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.6 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.6 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.6 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.6 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.6 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.6 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.59 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.59 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.59 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.59 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.59 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.59 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.58 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.58 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.58 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.58 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.58 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.58 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.58 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.57 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.56 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.55 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.55 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.55 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.54 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.54 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.54 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.53 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.53 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.53 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.53 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.53 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.53 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.53 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.52 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.52 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.52 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.52 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.52 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.51 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.51 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.5 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.5 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.5 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.5 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.49 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.49 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.45 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.45 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.45 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.45 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.45 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.44 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.44 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.43 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.42 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.42 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.4 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.4 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.39 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.39 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.38 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.38 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.38 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.37 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.36 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.35 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.35 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.34 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.33 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.33 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.32 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.31 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.31 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.3 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.3 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.3 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.29 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.28 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.28 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.28 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.27 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.27 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.26 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.26 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.26 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.25 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.25 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.24 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.24 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.24 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.23 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.23 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.23 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.22 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.22 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.22 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.22 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.21 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.21 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.21 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.2 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.19 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.19 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.19 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.19 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.18 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.18 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.17 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.17 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.17 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.16 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.16 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.16 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.15 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.15 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.12 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.12 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.08 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.07 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.06 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.04 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.03 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.03 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.02 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.02 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.01 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.01 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.01 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.01 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.0 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.99 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.99 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.99 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.97 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.96 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.96 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.94 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.93 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.92 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.92 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.92 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 97.92 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.91 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.9 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.9 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.89 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.89 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 97.88 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.87 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.87 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 97.84 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 97.83 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.82 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.81 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 97.78 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.78 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.78 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.76 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.76 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.76 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 97.75 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-15 Score=152.81 Aligned_cols=117 Identities=16% Similarity=0.263 Sum_probs=88.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~ 335 (666)
.++.|.+..+ ...+|||||||+|.++..|++. +|+|+|+|+.|+..+ ++ .....+...+++.++++
T Consensus 29 l~~~l~~~~~------~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a-----~~-~~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 29 LFRWLGEVAP------ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQA-----LR-HPRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHSS------CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTC-----CC-CTTEEEEECCTTCCCCC
T ss_pred HHHHHHHhcC------CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhh-----hh-cCCceeehhhhhhhccc
Confidence 4445554443 2368999999999999999987 999999999877543 22 22345566678999999
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~ 388 (666)
+++||+|+|+.++ ||. +...+++++.|+|||||.|++.+........++..
T Consensus 97 ~~sfD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~ 147 (257)
T 4hg2_A 97 PASVDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDA 147 (257)
T ss_dssp SSCEEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHH
T ss_pred CCcccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHH
Confidence 9999999998875 663 68899999999999999999886533333344443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=148.21 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=79.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~ 344 (666)
.++.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+.+... .+. ...+...|+..+|++ .||+|+|
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~-~~~~~~v~~~~~D~~~~~~~--~~d~v~~ 145 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVVL 145 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT-SCCSSCEEEEESCTTTCCCC--SEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh-hccCceEEEeeccccccccc--cccccee
Confidence 45679999999999998888753 799999999999888754433 333 334556678888764 6999999
Q ss_pred cccccccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+++++ ++. ..+|++++|+|||||.|+++..
T Consensus 146 ~~~l~~~-~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 146 NFTLQFL-EPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeeeec-CchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 8876665 433 4789999999999999999875
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-14 Score=142.55 Aligned_cols=113 Identities=13% Similarity=0.277 Sum_probs=90.2
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP 335 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~ 335 (666)
++.+.+.+.. .+..+|||||||+|.++..|++. +|+|+|+++.++..++.. +...+.. ..+...|++.+|++
T Consensus 26 ~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQIAAL----KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF-IEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHHHHTC----CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHhCC----CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCceEEEEecHHhCCCC
Confidence 3455555542 34579999999999999999876 899999999999887643 4444544 34556678889999
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|+|+.+++|+ +++..+|.++.|+|||||.+++...
T Consensus 101 ~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEhhhhHhc-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999999999887777 8899999999999999999999754
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=140.52 Aligned_cols=184 Identities=14% Similarity=0.073 Sum_probs=114.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
....+.+.+.. .+..+|||||||+|.++..+++. +|+++|+++.++..++.. .....+...|.+.++
T Consensus 21 ~~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~ 91 (259)
T 2p35_A 21 PARDLLAQVPL----ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK 91 (259)
T ss_dssp HHHHHHTTCCC----SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC
T ss_pred HHHHHHHhcCC----CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC
Confidence 34456665542 34578999999999988887753 899999999888655432 233455666778888
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhcCceEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAI 413 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~~~g~~~i 413 (666)
++++||+|+|+.+++|+ ++...+|+++.++|||||.++++++...... ....+..+. ....|...........
T Consensus 92 -~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~ 164 (259)
T 2p35_A 92 -PAQKADLLYANAVFQWV-PDHLAVLSQLMDQLESGGVLAVQMPDNLQEP--THIAMHETA---DGGPWKDAFSGGGLRR 164 (259)
T ss_dssp -CSSCEEEEEEESCGGGS-TTHHHHHHHHGGGEEEEEEEEEEEECCTTSH--HHHHHHHHH---HHSTTGGGC-------
T ss_pred -ccCCcCEEEEeCchhhC-CCHHHHHHHHHHhcCCCeEEEEEeCCCCCcH--HHHHHHHHh---cCcchHHHhccccccc
Confidence 77899999998875555 8899999999999999999999975222221 112222221 1122433211100001
Q ss_pred eec-CCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCC
Q 005981 414 WKK-PTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENG 460 (666)
Q Consensus 414 ~~k-pl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g 460 (666)
+.. ...+...+++++||.+... +......|.+...++..++..+
T Consensus 165 ~~~~~~~~~~~~l~~aGf~v~~~---~~~~~~~~~~~~~~~~~l~~~~ 209 (259)
T 2p35_A 165 KPLPPPSDYFNALSPKSSRVDVW---HTVYNHPMKDADSIVEWVKGTG 209 (259)
T ss_dssp CCCCCHHHHHHHHGGGEEEEEEE---EEEEEEEESCHHHHHHHHTTTT
T ss_pred cCCCCHHHHHHHHHhcCCceEEE---EEEeeeccCCchHHhhhhhcCc
Confidence 111 1123456788899953222 2334445667777777777444
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=142.37 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=86.9
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
....+.+.+.+.++.+ .+..+|||||||+|.++..+++. +|+|+|+++.++..+ +++ ..+...+...
T Consensus 24 ~~~~~~~~~~~~l~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a-----~~~---~~~~~~d~~~ 92 (240)
T 3dli_A 24 SRELVKARLRRYIPYF---KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFC-----EGK---FNVVKSDAIE 92 (240)
T ss_dssp CHHHHHHHHGGGGGGT---TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHH-----HTT---SEEECSCHHH
T ss_pred CHHHHHHHHHHHHhhh---cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHH-----Hhh---cceeeccHHH
Confidence 3445556666666543 34578999999999999888765 899999999876544 333 2344445444
Q ss_pred C--CCCCCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEEECCCCCCH
Q 005981 332 L--PYPSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQPVYKHE 383 (666)
Q Consensus 332 L--pf~d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st~P~~~~~ 383 (666)
+ ++++++||+|+|..+++|+ .+ ...+++++.|+|||||++++.++ .....
T Consensus 93 ~~~~~~~~~fD~i~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~ 146 (240)
T 3dli_A 93 YLKSLPDKYLDGVMISHFVEHL-DPERLFELLSLCYSKMKYSSYIVIESP-NPTSL 146 (240)
T ss_dssp HHHTSCTTCBSEEEEESCGGGS-CGGGHHHHHHHHHHHBCTTCCEEEEEE-CTTSH
T ss_pred HhhhcCCCCeeEEEECCchhhC-CcHHHHHHHHHHHHHcCCCcEEEEEeC-Ccchh
Confidence 3 7788999999999988887 53 47999999999999999999875 34433
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-13 Score=130.60 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~ 329 (666)
.....+.+.+.+.. ...+|||||||+|.++..+++. +|+++|+++.++..++... ...+.. ..+...+.
T Consensus 29 ~~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~ 102 (219)
T 3dlc_A 29 YPIIAENIINRFGI-----TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNI-ADANLNDRIQIVQGDV 102 (219)
T ss_dssp HHHHHHHHHHHHCC-----CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECBT
T ss_pred cHHHHHHHHHhcCC-----CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HhccccCceEEEEcCH
Confidence 44455666665541 2238999999999999888764 8999999999998876544 334432 35566678
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+++++++||+|+|+.+++|+ .+...+++++.++|||||.++++..
T Consensus 103 ~~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 103 HNIPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp TBCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHCCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEec
Confidence 8889989999999999987777 8899999999999999999999863
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=139.55 Aligned_cols=120 Identities=24% Similarity=0.351 Sum_probs=94.7
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEe
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAA 326 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~ 326 (666)
........+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++.. +...++. ..+..
T Consensus 43 ~~~~~~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~ 117 (273)
T 3bus_A 43 DDATDRLTDEMIALLDV----RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR-ATAAGLANRVTFSY 117 (273)
T ss_dssp HHHHHHHHHHHHHHSCC----CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEE
Confidence 33445566667666642 35579999999999999888753 899999999998877644 3444543 34556
Q ss_pred ecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 327 FATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 327 ~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...+++++++||+|++..+++|+ .+...+|+++.++|||||.+++.++
T Consensus 118 ~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 118 ADAMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp CCTTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CccccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 6788899988999999999887777 7889999999999999999999864
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-13 Score=134.66 Aligned_cols=103 Identities=22% Similarity=0.352 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+..+|||||||+|.++..+++. +|+++|+++.++..++... ...+.. ..+...+.+.+++++++||+|+|..+++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 98 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFA-QEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 98 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCCeEEEecccccCCCCCCcEEEEEECCchh
Confidence 34579999999999999999876 8999999999998776544 334443 3455667888999899999999998877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+ .++..+|.++.|+|||||.+++...
T Consensus 99 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 99 HF-SDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc-cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 77 7889999999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=137.46 Aligned_cols=117 Identities=9% Similarity=0.028 Sum_probs=93.1
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
.....++.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++. .+...++. ..+...+
T Consensus 20 ~~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~~~~d 94 (256)
T 1nkv_A 20 FTEEKYATLGRVLRM----KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHFIHND 94 (256)
T ss_dssp CCHHHHHHHHHHTCC----CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESC
T ss_pred CCHHHHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECC
Confidence 445667777777652 34579999999999998888753 89999999999988764 34445543 4556667
Q ss_pred ccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++.+++ +++||+|+|..+++|+ .+...+|+++.|+|||||.++++.+
T Consensus 95 ~~~~~~-~~~fD~V~~~~~~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 95 AAGYVA-NEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CTTCCC-SSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hHhCCc-CCCCCEEEECCChHhc-CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 888887 7899999998887776 7889999999999999999999863
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=140.44 Aligned_cols=115 Identities=15% Similarity=0.227 Sum_probs=90.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
.+++.+.+.+..+ .+..+|||||||+|.++..+++. +|+|+|+++.++..++... ...+....+...|+..
T Consensus 8 ~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 8 DYVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF-RLLPYDSEFLEGDATE 83 (284)
T ss_dssp HHHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHH-HSSSSEEEEEESCTTT
T ss_pred HHHHHHHHHHhcc---CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HhcCCceEEEEcchhh
Confidence 4455666665433 35589999999999999998864 7999999999887776433 3334344566667888
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++ ++||+|+|..+++|+ .+...+++++.++|||||++++..+
T Consensus 84 ~~~~-~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 84 IELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp CCCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCcC-CCeeEEEECChhhcC-CCHHHHHHHHHHHcCCCCEEEEEec
Confidence 8874 699999999887766 8889999999999999999999875
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=135.68 Aligned_cols=118 Identities=16% Similarity=0.256 Sum_probs=94.7
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
+.......+++.+..+ .+..+|||||||+|.++..+++. +|+|+|+++.++..++. .+...++. ..+...|
T Consensus 29 ~~~~~~~~~l~~l~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d 104 (257)
T 3f4k_A 29 GSPEATRKAVSFINEL---TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADRVKGITGS 104 (257)
T ss_dssp CCHHHHHHHHTTSCCC---CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECC
T ss_pred CCHHHHHHHHHHHhcC---CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECC
Confidence 4455666677777543 34579999999999999888765 89999999999887764 34445554 4556667
Q ss_pred ccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...+++++++||+|+|..+++|+ +...+++++.++|||||+++++++
T Consensus 105 ~~~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 105 MDNLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp TTSCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88899989999999999987777 688999999999999999999863
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=136.67 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=95.0
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
+.......+++.+..+ .++.+|||||||+|.++..+++. +|+|+|+++.++..++.. +...++. ..+...|
T Consensus 29 ~~~~~~~~~l~~l~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d 104 (267)
T 3kkz_A 29 GSPEVTLKALSFIDNL---TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRN-ARQSGLQNRVTGIVGS 104 (267)
T ss_dssp CCHHHHHHHHTTCCCC---CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECC
T ss_pred CCHHHHHHHHHhcccC---CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHH-HHHcCCCcCcEEEEcC
Confidence 3445566666766532 35589999999999999999876 899999999999887644 3445543 4556667
Q ss_pred ccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+.+++++++||+|+|..+++|+ +...+++++.++|||||.+++++.
T Consensus 105 ~~~~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 105 MDDLPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp TTSCCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhhCCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88899888999999999987777 788999999999999999999864
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=136.52 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..+|||||||+|.++..+++. +|+|+|+++.++..++..... ...+...+++.+ +++++||+|+|..+++|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~- 116 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDA-QLPRRYDNIVLTHVLEHI- 116 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC-CCSSCEEEEEEESCGGGC-
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc-CcCCcccEEEEhhHHHhh-
Confidence 468999999999999999877 899999999888665432211 334555566666 467899999999987777
Q ss_pred cChHHHHHHHH-HhccCCeEEEEEEC
Q 005981 353 RDDGILLLEVN-RMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 ~d~~~~L~el~-RvLkPGG~lv~st~ 377 (666)
+++..+|+++. |+|||||.++++++
T Consensus 117 ~~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 117 DDPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 78899999999 99999999999975
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=139.01 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHhhcc---cccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceE
Q 005981 253 HGADQYLDQIAKMVP---DITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMV 324 (666)
Q Consensus 253 ~g~~~~i~~L~~~L~---~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~ 324 (666)
......++.+.+.++ .+ .+..+|||||||+|.++..+++. +|+|+|+++.++..++... ...++. ..+
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~ 136 (297)
T 2o57_A 61 EASLRTDEWLASELAMTGVL---QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYN-NQAGLADNITV 136 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHHTCTTTEEE
T ss_pred HHHHHHHHHHHHHhhhccCC---CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HhcCCCcceEE
Confidence 344456666766661 22 34579999999999999888764 8999999999988776543 334442 345
Q ss_pred EeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 325 ~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...+...+|+++++||+|++..+++|+ .+...+|+++.|+|||||.++++++
T Consensus 137 ~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 137 KYGSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EECCTTSCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcCcccCCCCCCCEeEEEecchhhhc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 566788899999999999999998888 7789999999999999999999864
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=133.34 Aligned_cols=117 Identities=13% Similarity=0.213 Sum_probs=88.5
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
+.....+.+.+.+.. ..+..+|||||||+|.++..+++. +|+|+|+++.++..++.... ..+ ...+...|.
T Consensus 27 ~~~~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~-~~~~~~~d~ 101 (234)
T 3dtn_A 27 CFDDFYGVSVSIASV---DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR-GNL-KVKYIEADY 101 (234)
T ss_dssp THHHHHHHHHHTCCC---SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTC-SCT-TEEEEESCT
T ss_pred CHHHHHHHHHHHhhc---CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhc-cCC-CEEEEeCch
Confidence 344455666666653 245589999999999998888754 89999999988876653321 112 345566678
Q ss_pred cCCCCCCCCeeEEEecccccccccChH--HHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~--~~L~el~RvLkPGG~lv~st~ 377 (666)
..++++ ++||+|+|+.+++|+ .+.. .+++++.|+|||||.+++++.
T Consensus 102 ~~~~~~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 102 SKYDFE-EKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp TTCCCC-SCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCCC-CCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 888877 899999999987777 5444 699999999999999999975
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.5e-14 Score=140.53 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=87.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
.++..+++.+.. ....+|||||||+|.++..|+.. +|+++|+++.++..++..... . ....+...+...++
T Consensus 80 ~~~~~~l~~l~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 80 EGSRNFIASLPG----HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-M-PVGKFILASMETAT 153 (254)
T ss_dssp HHHHHHHHTSTT----CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-S-SEEEEEESCGGGCC
T ss_pred HHHHHHHHhhcc----cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-C-CceEEEEccHHHCC
Confidence 344555555531 34579999999999999888764 699999999988766543221 1 22345555778888
Q ss_pred CCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|+|..+++|+. .+...+|+++.++|||||++++++.
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8889999999999877774 2467999999999999999999874
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=131.38 Aligned_cols=104 Identities=14% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||||||+|.++..+++. +|+|+|+++.++..++.... ....+...++..++++ ++||+|+|..+++|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHL 119 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC-SCCSEEEEESCGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC-CCeEEEEECcchhcC
Confidence 3479999999999999998876 89999999988765543221 1334555678888887 999999999887777
Q ss_pred ccChHH--HHHHHHHhccCCeEEEEEECCCCCCHH
Q 005981 352 TRDDGI--LLLEVNRMLRAGGYFAWAAQPVYKHEE 384 (666)
Q Consensus 352 ~~d~~~--~L~el~RvLkPGG~lv~st~P~~~~~~ 384 (666)
.+... +|+++.|+|||||.++++++ ......
T Consensus 120 -~~~~~~~~l~~~~~~LkpgG~l~i~~~-~~~~~~ 152 (220)
T 3hnr_A 120 -TDDEKNVAIAKYSQLLNKGGKIVFADT-IFADQD 152 (220)
T ss_dssp -CHHHHHHHHHHHHHHSCTTCEEEEEEE-CBSSHH
T ss_pred -ChHHHHHHHHHHHHhcCCCCEEEEEec-cccChH
Confidence 66655 99999999999999999974 344433
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-13 Score=131.16 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=84.3
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC------CceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA------PAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~------~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.. +...++ ...+...+...+++++++||+|+++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETA-ARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-TTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHH-HHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 3479999999999999988876 899999999888766532 222333 1245555778888888999999999
Q ss_pred ccccccccChH---HHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 346 RCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 346 ~~l~h~~~d~~---~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
.+++|+ .++. .+++++.++|||||.+++.++.....
T Consensus 109 ~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 147 (235)
T 3sm3_A 109 AFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWH 147 (235)
T ss_dssp SCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTT
T ss_pred chhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECCcchh
Confidence 887777 6666 89999999999999999997644333
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.4e-13 Score=134.64 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=84.4
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+..+|||||||+|.++..+++. +|+++|+++.++..++... ...+.. ..+...|...+++++++||+|+++.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENT-EKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 35679999999999999888754 8999999999988776443 344543 44556678888988999999999988
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++|+ .++..+++++.++|||||++++..
T Consensus 115 l~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHL-QSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhc-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7776 888999999999999999999985
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=133.63 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+..+|||||||+|.++..+++. +|+|+|+++.++..++... ........+...+.+.+++++++||+|+++.+++|
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 34579999999999999998876 8999999999887765433 11122345566678888988899999999888555
Q ss_pred cccChHHHHHHHHHhccCCeEEEEE
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+ ++...+++++.|+|||||.+++.
T Consensus 117 ~-~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 V-PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp C-TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-CCHHHHHHHHHHHCCCCcEEEEE
Confidence 5 78899999999999999999987
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-13 Score=134.38 Aligned_cols=110 Identities=17% Similarity=0.297 Sum_probs=87.2
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS 336 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d 336 (666)
..+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++.... .....+...++..+++++
T Consensus 34 ~~l~~~~~~----~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 34 HELKKMLPD----FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHHTTCCC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCT
T ss_pred HHHHHhhhc----cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCC
Confidence 344555542 35579999999999999988865 79999999988766543222 233456666788899888
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++||+|+|+.+++|+ .+...+|+++.++|||||.++++..
T Consensus 107 ~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 107 DAYNVVLSSLALHYI-ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeEEEEEchhhhhh-hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999987777 8899999999999999999999853
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=134.82 Aligned_cols=103 Identities=9% Similarity=-0.031 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHH------------cCCCceEEeecccCCCCCC-CC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALE------------RGAPAMVAAFATRRLPYPS-QA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~------------rg~~~~~~~~d~e~Lpf~d-~s 338 (666)
...+|||+|||+|..+..|+++ +|+|+|+|+.|+..++.+.... ......+...|+..+++++ ++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 4579999999999999999865 8999999999998776432210 1223456667788888765 89
Q ss_pred eeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEEE
Q 005981 339 FDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 339 FDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st 376 (666)
||+|++..+++|+..+ ...+++++.|+|||||.+++.+
T Consensus 102 fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 102 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998887776422 3478999999999999855543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-13 Score=135.72 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=89.5
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
.+.....+.+.+.+.. .++.+|||||||+|.++..+++. +|+|+|+++.++..++...... ....+...|.
T Consensus 38 ~~~~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~ 111 (266)
T 3ujc_A 38 SGGLEATKKILSDIEL----NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDI 111 (266)
T ss_dssp TTHHHHHHHHTTTCCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCT
T ss_pred cchHHHHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECcc
Confidence 3444555666666541 35579999999999999888764 8999999998775554221111 2334556678
Q ss_pred cCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+++++++||+|+|..+++|+. .+...+|+++.|+|||||.+++.++
T Consensus 112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88899899999999998877763 4567999999999999999999864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-13 Score=133.49 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=87.2
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~ 335 (666)
.++.+.+.++ +..+|||||||+|.++..+++. +|+|+|+++.++..++... ......+...+...++++
T Consensus 43 ~~~~l~~~~~------~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~ 113 (242)
T 3l8d_A 43 IIPFFEQYVK------KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE 113 (242)
T ss_dssp HHHHHHHHSC------TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC
T ss_pred HHHHHHHHcC------CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC
Confidence 3455555553 3469999999999999999876 8999999998775543221 122345566678888988
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|+|..+++|+ +++..+++++.++|||||.+++++.
T Consensus 114 ~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWT-EEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp TTCEEEEEEESCTTSS-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccEEEEcChHhhc-cCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 9999999999987777 8889999999999999999999974
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=129.33 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=84.4
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
...+|||+|||+|.++..+++. +|+++|+++.++..++..... .++. ..+...+...+++++++||+|+++.+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK-LGLKNVEVLKSEENKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-HTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-cCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence 4579999999999888877643 899999999999888755443 3433 45566678888888899999999998
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++|+ .+...+++++.++|||||.+++.+.
T Consensus 116 l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 116 FHEL-SEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp GGGC-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhc-CCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 7777 7889999999999999999999864
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=146.95 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=110.0
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHc----C----CCceEEeecccCC------CC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER----G----APAMVAAFATRRL------PY 334 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~r----g----~~~~~~~~d~e~L------pf 334 (666)
++.+|||||||+|.++..|++. +|+|+|+++.++..++.+..... | ....+...+++.+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 4579999999999888777652 89999999999887765443321 2 2345556677776 88
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCH-HHHHHHHHHHHHhhhhhhhhhhhhcCceEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE-EAQEEHWKEMLDLTTRLCWELVKKEGYIAI 413 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~-~el~~~w~~~~~l~~~l~W~~v~~~g~~~i 413 (666)
++++||+|+++.+++++ .++..+|+++.|+|||||+|++++....... ...... ... |.... .+.
T Consensus 163 ~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~--------~~~~~-~~~--- 228 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLS-TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQD-PIL--------YGECL-GGA--- 228 (383)
T ss_dssp CTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHC-HHH--------HHTTC-TTC---
T ss_pred CCCCEEEEEEccchhcC-CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhh-HHH--------hhccc-ccC---
Confidence 89999999998886665 8899999999999999999999864222211 111110 000 10000 000
Q ss_pred eecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCC
Q 005981 414 WKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGY 461 (666)
Q Consensus 414 ~~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~ 461 (666)
....+...+++++||..... ....+....+..+...+..+...++
T Consensus 229 --~~~~~~~~ll~~aGF~~v~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (383)
T 4fsd_A 229 --LYLEDFRRLVAEAGFRDVRL-VSVGPVDVSDPQLRKLVPDVQFYSC 273 (383)
T ss_dssp --CBHHHHHHHHHHTTCCCEEE-EEEEEECCCCHHHHTTSTTCCEEEE
T ss_pred --CCHHHHHHHHHHCCCceEEE-EeccccccCCHhHHHHhcCCceeEE
Confidence 01123455788899965432 1233455566777777776664433
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=126.34 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
+..+|||||||+|.++..+ .. +|+++|+++.++..++.+. ....+...+...+++++++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFTTLEFV- 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC-
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcChhhhc-
Confidence 4579999999999999988 56 8999999998876554322 23345556778889888999999999887776
Q ss_pred cChHHHHHHHHHhccCCeEEEEEECC
Q 005981 353 RDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 353 ~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
+++..+++++.++|||||.++++++.
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecC
Confidence 78899999999999999999999753
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=127.66 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=81.6
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..+|||||||+|.++..|+.. +|+|+|+++.++..++ ++.....+...++..+++++++||+|+|..+++|+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-----~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELAR-----QTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHH-----HHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH-----HhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 368999999999999999876 8999999998875554 333344566667888888889999999999888874
Q ss_pred -cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 353 -RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 -~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...+|+++.++|||||.++++.+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3678999999999999999999974
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=134.95 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=86.4
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhc---cC--CeEEEeCCcchHHHHHHHHHHH-c-CCCceEEeeccc
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PR--NVITMSIAPKDVHENQIQFALE-R-GAPAMVAAFATR 330 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~---~~--~V~gvDiS~~~l~~a~~~~a~~-r-g~~~~~~~~d~e 330 (666)
+.+.+.+... .+..+|||||||+|.++..|+ .. +|+|+|+++.++..++...... . .....+...+++
T Consensus 25 ~~~~l~~~~~-----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 25 FYKMIDEYHD-----GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHCC-----SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHhc-----CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 3444444433 345899999999999999888 33 8999999999998887544432 1 233456666788
Q ss_pred CCCCCC------CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 331 RLPYPS------QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 331 ~Lpf~d------~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.+++++ ++||+|+|+.+++|+ +...+++++.|+|||||.+++.
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 888777 899999999886665 8999999999999999999884
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=134.67 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=83.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCC-CCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lp-f~d~sFDlVv~s~~l 348 (666)
...+|||||||+|.++..+++. +|+|+|+++.++..++... ...++. ..+...+...++ +.+++||+|+|..++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAA-EAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 3579999999999999999876 8999999999988776433 334442 345556777777 778999999999887
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+ +++..+|+++.++|||||.+++...
T Consensus 147 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 147 EWV-ADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcc-cCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 777 8889999999999999999999864
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=135.29 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=90.3
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP 333 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lp 333 (666)
.+.+.+.+..+ .+..+|||||||+|.++..++++ +|+|+|+++.++..++.+ +...++. ..+...|...++
T Consensus 105 ~~~l~~~l~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~ 180 (312)
T 3vc1_A 105 AEFLMDHLGQA---GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRR-ARELRIDDHVRSRVCNMLDTP 180 (312)
T ss_dssp HHHHHTTSCCC---CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTTSCC
T ss_pred HHHHHHHhccC---CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhcCC
Confidence 34455555422 35579999999999999888764 899999999999887644 4445544 456666788899
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|+|..+++|+ +...+|+++.|+|||||.+++.+.
T Consensus 181 ~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp CCTTCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 989999999999887777 488999999999999999999864
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-13 Score=129.97 Aligned_cols=101 Identities=17% Similarity=0.284 Sum_probs=80.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+..+|||||||+|.++..+++. +|+|+|+++.++..++..... .+ ...+...|+..++ ++++||+|+|+.+++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR-WS-HISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-CS-SEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-CC-CeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 34578999999999999999887 899999999988766543222 12 3455566777777 6789999999988777
Q ss_pred cccCh---HHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDD---GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~---~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ .++ ..+|.++.++|||||.++++++
T Consensus 127 ~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 127 L-EDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp S-SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C-CCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 7 555 4779999999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=130.79 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+..+|||||||+|.++..|++. +|+++|+++.++..++............+...++..+++++++||+|+|..+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 4679999999999999988865 8999999999887776443322111234555577888888889999999988777
Q ss_pred cccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ .+. ..+|+++.++|||||.++++++
T Consensus 159 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 159 L-TDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp S-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 7 553 4899999999999999999864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=132.40 Aligned_cols=98 Identities=19% Similarity=0.346 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||||||+|.++..+++. +|+|+|+++.++..++.+ .... +...+...+++++++||+|++..+++|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-----~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK-----GVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH-----TCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhh-----cCCC-EEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 4479999999999999999876 899999999888665432 2222 5556788889888999999998888898
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..++..+|+++.++|||||.++++++
T Consensus 128 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 128 VENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 77889999999999999999999865
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-13 Score=135.20 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=87.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..+ +++. ...+...|.+.+++
T Consensus 21 ~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a-----~~~~-~~~~~~~d~~~~~~ 90 (261)
T 3ege_A 21 RIVNAIINLLNL----PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQA-----VVHP-QVEWFTGYAENLAL 90 (261)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSS-----CCCT-TEEEECCCTTSCCS
T ss_pred HHHHHHHHHhCC----CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHH-----Hhcc-CCEEEECchhhCCC
Confidence 456666666652 34579999999999999999876 899999999766432 2222 44566667888999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++||+|+|..+++|+ .+...+++++.|+|| ||++++.+.
T Consensus 91 ~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 91 PDKSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp CTTCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCCCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 99999999999987787 899999999999999 998888764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=126.92 Aligned_cols=102 Identities=20% Similarity=0.311 Sum_probs=81.4
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..+|||+|||+|.++..++.. +|+++|+++.++..++.... ..+....+...|...+++++++||+|+|+.+++++.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 117 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAK-SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence 579999999999999888876 89999999999887765443 334444566667778888888999999987733331
Q ss_pred -cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 353 -RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 -~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...+++++.++|||||.+++..+
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 4567899999999999999999864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-13 Score=136.86 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHH-----------------HcCCCceEEeecccCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL-----------------ERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~-----------------~rg~~~~~~~~d~e~Lpf 334 (666)
...+|||+|||+|..+..|++. +|+|+|+|+.++..++.+... ..+....+...|+..+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 4478999999999999999876 899999999999776533221 012334566667888887
Q ss_pred CC-CCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEEE
Q 005981 335 PS-QAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d-~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st 376 (666)
.+ ++||+|++..+++++..+ ...+++++.|+|||||.|++.+
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 64 899999988877776432 3479999999999999997654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=122.93 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC-CCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp-f~d~sFDlVv~s~~l~ 349 (666)
++.+|||+|||+|.++..|++. +|+|+|+++.++..++.+.. ..++.. .+...+.+.++ +.+++||+|+++...+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLS-DLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 4579999999999999999876 89999999999988875444 344432 33344455543 4478899998763322
Q ss_pred cc--------ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NW--------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~--------~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. ..+...+++++.|+|||||.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 21 12234788999999999999999864
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=123.35 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=80.8
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
..+|||+|||+|.++..+++. +|+++|+++.++..++.... ..+. ...+...|...+++ +++||+|+++.+++|+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~ 110 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKS-IENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFL 110 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGS
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH-hCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhC
Confidence 469999999999999988866 89999999999888775443 3444 34455567777887 7899999999887776
Q ss_pred cc-ChHHHHHHHHHhccCCeEEEEEE
Q 005981 352 TR-DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 352 ~~-d~~~~L~el~RvLkPGG~lv~st 376 (666)
.. +...+++++.++|||||.+++.+
T Consensus 111 ~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 111 EAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 32 56799999999999999988765
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=127.68 Aligned_cols=116 Identities=9% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC------CceE
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA------PAMV 324 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~------~~~~ 324 (666)
.....+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++.+... .++ ...+
T Consensus 14 ~~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~ 88 (219)
T 3jwg_A 14 NQQRLGTVVAVLKS----VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI-DRLPEMQRKRISL 88 (219)
T ss_dssp HHHHHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG-GGSCHHHHTTEEE
T ss_pred hHHHHHHHHHHHhh----cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh-hccccccCcceEE
Confidence 34445555555542 24579999999999999999864 899999999998877654332 222 2345
Q ss_pred EeecccCCCCCCCCeeEEEecccccccccCh--HHHHHHHHHhccCCeEEEEEE
Q 005981 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 325 ~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~--~~~L~el~RvLkPGG~lv~st 376 (666)
...|+..+++++++||+|+|+.+++|+ .+. ..+++++.++|||||.++.+.
T Consensus 89 ~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 89 FQSSLVYRDKRFSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EECCSSSCCGGGTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EeCcccccccccCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 555677777777899999999998887 544 589999999999999776653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=125.93 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=78.1
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..+|||||||+|.++..+++. +|+|+|+++.++..++.+. ++ .+...+...++ .+++||+|+|+.+++|+.
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 116 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GR--PVRTMLFHQLD-AIDAYDAVWAHACLLHVP 116 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TS--CCEECCGGGCC-CCSCEEEEEECSCGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CC--ceEEeeeccCC-CCCcEEEEEecCchhhcC
Confidence 479999999999999999876 8999999998887665433 22 23344667777 779999999999888873
Q ss_pred -cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 353 -RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 -~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++...+|+++.++|||||+++++..
T Consensus 117 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 117 RDELADVLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 2566999999999999999999965
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=126.28 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=80.8
Q ss_pred CCCeEEEECCCCchhH-HHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFG-AYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a-~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+..+|||+|||+|.++ ..+... +|+|+|+++.++..++..... .+....+...++..+++++++||+|+|..+++|
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRE-NNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHH-HTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh-cCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 3479999999999874 344333 899999999999887654433 344444566678888888899999999888777
Q ss_pred cc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. .+...+++++.++|||||.++++++
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 73 4566999999999999999999864
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.4e-13 Score=136.62 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCchhHHH----hcc----CC--eEEEeCCcchHHHHHHHHHHHcCCCce---EEeecccCCC------C
Q 005981 274 HIRVVMDAGCGVASFGAY----LLP----RN--VITMSIAPKDVHENQIQFALERGAPAM---VAAFATRRLP------Y 334 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~----L~~----~~--V~gvDiS~~~l~~a~~~~a~~rg~~~~---~~~~d~e~Lp------f 334 (666)
+..+|||||||+|.++.. +.. .. ++++|+|+.|+..++.+.+...++... +...+.+.++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 456899999999976543 222 23 399999999998877554433344332 2222333333 5
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++||+|+|+.+++|+ +|+..+|++++|+|||||.+++...
T Consensus 132 ~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYV-KDIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp CCCCEEEEEEESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeec-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 68899999999886666 8999999999999999999999854
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-13 Score=136.05 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeecc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT 329 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d~ 329 (666)
..+.+.+.+.+.. ....+|||||||+|.++..|++. +|+|+|+|+.++..++.+...... ....+...+.
T Consensus 43 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 43 AEYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred HHHHHHHHHHhcc----cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 3445555555542 23478999999999999999877 899999999999877654322211 1223445566
Q ss_pred cCCC---CCCCCeeEEEec-ccccccccC-------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLP---YPSQAFDLIHCS-RCRINWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lp---f~d~sFDlVv~s-~~l~h~~~d-------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..++ +++++||+|+|. .+++|+ .+ ...+|+++.++|||||+++++.+
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~l~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNSFAHL-PDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTCGGGS-CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChHHhhc-CccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6666 788999999998 777777 66 77999999999999999999864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=128.14 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC------CceEE
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA------PAMVA 325 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~------~~~~~ 325 (666)
....+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++.+. ...++ ...+.
T Consensus 15 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~ 89 (217)
T 3jwh_A 15 QQRMNGVVAALKQ----SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL-DRLRLPRNQWERLQLI 89 (217)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH-TTCCCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH-HHhcCCcccCcceEEE
Confidence 3445556555542 24579999999999999998864 8999999999988776443 22333 23455
Q ss_pred eecccCCCCCCCCeeEEEecccccccccCh--HHHHHHHHHhccCCeEEEEEE
Q 005981 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 326 ~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~--~~~L~el~RvLkPGG~lv~st 376 (666)
..++..+++++++||+|+|+.+++|+ .+. ..+++++.++|||||.++++.
T Consensus 90 ~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 90 QGALTYQDKRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ECCTTSCCGGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eCCcccccccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 55666666667899999999998777 544 699999999999999777664
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=130.58 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||||||+|.++..+++. +|+|+|+++.++..++.. .....+...+++.+++ +++||+|+|+.+++|+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~ 130 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQN-----YPHLHFDVADARNFRV-DKPLDAVFSNAMLHWV 130 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----CTTSCEEECCTTTCCC-SSCEEEEEEESCGGGC
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhh-----CCCCEEEECChhhCCc-CCCcCEEEEcchhhhC
Confidence 4579999999999999888765 899999999888665432 2233455567788887 5899999998885555
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
.++..+|+++.|+|||||++++... .......+...+
T Consensus 131 -~d~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~ 167 (279)
T 3ccf_A 131 -KEPEAAIASIHQALKSGGRFVAEFG-GKGNIKYILEAL 167 (279)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEE-CTTTTHHHHHHH
T ss_pred -cCHHHHHHHHHHhcCCCcEEEEEec-CCcchHHHHHHH
Confidence 8899999999999999999999864 333333444433
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=132.53 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=87.9
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
.....++.+.+.+.. .++.+|||||||+|.++..+++. +|+|+|+++.++..++.. +...++. ..+...|
T Consensus 56 a~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d 130 (302)
T 3hem_A 56 AQYAKRKLALDKLNL----EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAM-FDEVDSPRRKEVRIQG 130 (302)
T ss_dssp HHHHHHHHHHHTTCC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHH-HHHSCCSSCEEEEECC
T ss_pred HHHHHHHHHHHHcCC----CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEECC
Confidence 334456666666642 35579999999999999888765 899999999999887754 4445554 3445556
Q ss_pred ccCCCCCCCCeeEEEecccccccccCh---------HHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDD---------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~---------~~~L~el~RvLkPGG~lv~st~ 377 (666)
...+ +++||+|++..+++|+ .++ ..+++++.++|||||.+++.+.
T Consensus 131 ~~~~---~~~fD~v~~~~~~~~~-~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 131 WEEF---DEPVDRIVSLGAFEHF-ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GGGC---CCCCSEEEEESCGGGT-TCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred HHHc---CCCccEEEEcchHHhc-CccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 6655 6899999999987777 443 6899999999999999999875
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-13 Score=134.05 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=81.9
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR- 331 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~- 331 (666)
..+.+.+.+.+. ..+.+|||||||+|..+.++++. +|+++|+++.++..++. .+...+....+...+.+.
T Consensus 47 ~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~-~~~~~~~~~~~~~~~a~~~ 120 (236)
T 3orh_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHH-HHhhCCCceEEEeehHHhh
Confidence 345556666554 35579999999999999999876 79999999998877764 344444444444444333
Q ss_pred -CCCCCCCeeEEEe-----cccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 332 -LPYPSQAFDLIHC-----SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 -Lpf~d~sFDlVv~-----s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.++++++||.|++ .....|+ .+...++.++.|+|||||.|++.
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~~~~-~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccCCceEEEeeeecccchhhh-cchhhhhhhhhheeCCCCEEEEE
Confidence 2477899999974 2233344 56779999999999999999875
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=130.95 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=87.4
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d 328 (666)
.....++.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++... ...+. ...+...|
T Consensus 48 a~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~~~~~~~~d 122 (287)
T 1kpg_A 48 AQIAKIDLALGKLGL----QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLRSKRVLLAG 122 (287)
T ss_dssp HHHHHHHHHHTTTTC----CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCSCEEEEESC
T ss_pred HHHHHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCCCeEEEECC
Confidence 333455666666542 34579999999999999888743 8999999999887776433 33343 23444556
Q ss_pred ccCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...++ ++||+|+|..+++|+. .+...+|+++.|+|||||.+++.++
T Consensus 123 ~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 123 WEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp GGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 66665 7899999999988885 4677999999999999999999864
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=125.77 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=84.3
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP 335 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~Lpf~ 335 (666)
...+.+.+..+ ....+|||||||+|.++..+++. +|+|+|+++.++..++. .+. ...+...|...+ ++
T Consensus 34 ~~~~~~~l~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-----~~~~~~~~~~~d~~~~-~~ 104 (218)
T 3ou2_A 34 APAALERLRAG---NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR-----HGLDNVEFRQQDLFDW-TP 104 (218)
T ss_dssp HHHHHHHHTTT---TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG-----GCCTTEEEEECCTTSC-CC
T ss_pred HHHHHHHHhcC---CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh-----cCCCCeEEEecccccC-CC
Confidence 34455555432 34469999999999999888765 89999999987755542 443 334555667777 77
Q ss_pred CCCeeEEEecccccccccCh--HHHHHHHHHhccCCeEEEEEECC
Q 005981 336 SQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~--~~~L~el~RvLkPGG~lv~st~P 378 (666)
+++||+|+|+.+++|+ ++. ..+|+++.++|||||.+++++..
T Consensus 105 ~~~~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 105 DRQWDAVFFAHWLAHV-PDDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCceeEEEEechhhcC-CHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 8999999999987777 554 68999999999999999999753
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=126.01 Aligned_cols=119 Identities=20% Similarity=0.323 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
...+.+.+.+.+... ..+..+|||||||+|.++..+++. +|+++|+++.++..++.... ..+....+...++..+
T Consensus 20 ~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~ 96 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR-SQGLKPRLACQDISNL 96 (246)
T ss_dssp HHHHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEECCCGGGC
T ss_pred HHHHHHHHHHHHHHh--CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHh-hcCCCeEEEecccccC
Confidence 344555555555432 124579999999999999998876 89999999999988775443 3444445566677888
Q ss_pred CCCCCCeeEEEecc-cccccc--cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSR-CRINWT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~-~l~h~~--~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++ ++||+|+|+. +++|+. .+...+|+++.++|||||.++++.+
T Consensus 97 ~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 97 NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 877 8999999987 777763 3456899999999999999999764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-12 Score=128.86 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecc-cccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR-CRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~-~l~h 350 (666)
...+|||||||+|.++..|++. +|+|+|+++.++..++. +.....+...|+..+++ +++||+|+|+. +++|
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-----~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~ 123 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARR-----RNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGH 123 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHH-----HCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCEEEECChHHCCc-cCCcCEEEEcCchhhh
Confidence 3479999999999999999887 89999999988765543 22234566667888887 68999999987 7666
Q ss_pred cc--cChHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WT--RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~--~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+. .+...+|+++.++|||||.+++..
T Consensus 124 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 124 LAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp SCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 63 245688999999999999999974
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=131.65 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=82.3
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
..+++.+.+.+. .+..+|||||||+|.++..+++. +|+|+|+++.++..++. .+...+....+...+.+.+
T Consensus 47 ~~~~~~l~~~~~-----~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~ 120 (236)
T 1zx0_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHhhcC-----CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHHh
Confidence 345555555443 34578999999999999999774 79999999999887764 3333343344555666777
Q ss_pred --CCCCCCeeEEEe-cccccccc----cChHHHHHHHHHhccCCeEEEEEE
Q 005981 333 --PYPSQAFDLIHC-SRCRINWT----RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 333 --pf~d~sFDlVv~-s~~l~h~~----~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++++||+|++ ...+ +.. .+...+++++.|+|||||+|++..
T Consensus 121 ~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 121 APTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 788899999998 4432 221 123377999999999999998874
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=123.91 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=79.4
Q ss_pred eEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc-c
Q 005981 277 VVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT-R 353 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~-~ 353 (666)
+|||||||+|.++..+++. +|+++|+++.++..++.... ..+....+...++..+++++++||+|+|+. .|+. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQ-EKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHH-HHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHH-hcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 8999999999999998876 89999999999887765443 334455556667788888889999999853 4442 4
Q ss_pred ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 354 DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...++.++.++|||||.+++.++
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 567999999999999999999975
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-12 Score=127.31 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+..+|||||||+|.++..+++. +|+++|+++.++..++..... ....+...+...+++++++||+|++..+++|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEeccccc
Confidence 4579999999999999888765 799999999877555422111 1234555677788888899999999988777
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ ++...+|+++.++|||||.++++++
T Consensus 120 ~-~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 120 V-EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp C-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 6 7889999999999999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=131.32 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=86.8
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG----APAMVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d~e 330 (666)
.....+.+.+. ....+|||||||+|.++..|++. +|+|+|+++.++..++.+.. ..+ ....+...|+.
T Consensus 70 ~~~~~~~~~~~-----~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 70 SEAREFATRTG-----PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLA-EAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHC-----CCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHH-TSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHHhhC-----CCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHh-hcccccccceEEEeCchh
Confidence 34555555554 22348999999999999999877 89999999999987764433 333 23456666788
Q ss_pred CCCCCCCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++ +++||+|+|+...+|+.+. ...+|+++.++|||||.|++.++
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 8887 6899999987666666442 46999999999999999999964
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=119.94 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||+|||+|.++..+++. +|+++|+++.++..++.. .....+...+ +++++++||+|+++.+++|+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDFILFANSFHDM 88 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEEEEEESCSTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEEEEEccchhcc
Confidence 3468999999999999999887 899999999877655433 2233344433 77888999999999987777
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++...+++++.|+|||||.+++.+.
T Consensus 89 -~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 89 -DDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 7889999999999999999999864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=132.47 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC-----------------------------C
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-----------------------------P 321 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~-----------------------------~ 321 (666)
++.+|||||||+|.++..++.. +|+|+|+|+.|+..++.......+. .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 4578999999999887766544 6999999999998876432211000 0
Q ss_pred c-eEEeecccC-CCC---CCCCeeEEEeccccccccc---ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 322 A-MVAAFATRR-LPY---PSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 322 ~-~~~~~d~e~-Lpf---~d~sFDlVv~s~~l~h~~~---d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+...|+.. .|+ ..++||+|+|+.+++|... +...++++++|+|||||+|++++.
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 0 134445544 343 2579999999999877643 345899999999999999999963
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-12 Score=121.76 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=86.6
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC-CceEEee
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-PAMVAAF 327 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~ 327 (666)
....+...+.+.+.+.... ..+..+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..++ ...+...
T Consensus 23 rp~~~~~~~~l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~ 100 (189)
T 3p9n_A 23 RPTTDRVRESLFNIVTARR-DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIE-ALGLSGATLRRG 100 (189)
T ss_dssp ---CHHHHHHHHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHH-HHTCSCEEEEES
T ss_pred ccCcHHHHHHHHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH-HcCCCceEEEEc
Confidence 3344555666666654321 124579999999999998876654 69999999999988875444 3444 2345555
Q ss_pred cccCCC--CCCCCeeEEEecccccccccChHHHHHHHHH--hccCCeEEEEEEC
Q 005981 328 ATRRLP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (666)
Q Consensus 328 d~e~Lp--f~d~sFDlVv~s~~l~h~~~d~~~~L~el~R--vLkPGG~lv~st~ 377 (666)
|+..++ +++++||+|+++..+++...+...++.++.+ +|+|||.+++...
T Consensus 101 d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 101 AVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred cHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 555443 4468999999876644433567789999999 9999999999864
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=123.89 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=79.1
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
.+|||||||+|.++..|+.. +|+|+|+++.++..++........ ....+...|+..++ ++++||+|+|+.+++++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 146 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIE 146 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSC
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCC
Confidence 58999999999999999877 899999999988777644332111 12345555677766 456999999998877773
Q ss_pred c-ChHHHHHHHHHhccCCeEEEEEECC
Q 005981 353 R-DDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 353 ~-d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
. +...+++++.++|||||++++...+
T Consensus 147 ~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 147 PEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp GGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 2 5679999999999999999998653
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-12 Score=132.98 Aligned_cols=103 Identities=8% Similarity=0.038 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCchhHHHhc-cC--CeEEEeCCcchHHHHHHHHHHHcCCC-------ceEEeecc------cCC--CCC
Q 005981 274 HIRVVMDAGCGVASFGAYLL-PR--NVITMSIAPKDVHENQIQFALERGAP-------AMVAAFAT------RRL--PYP 335 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~-~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-------~~~~~~d~------e~L--pf~ 335 (666)
.+.+|||||||+|..+..++ .. +|+|+|+|+.|+..|+.+... .+.. ..+...++ +.+ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~-~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNK-LNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-HCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh-ccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35789999999997554443 32 799999999999988764433 3321 12323333 222 356
Q ss_pred CCCeeEEEecccccccc--cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~--~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|+|..++++.. .+...+|+++.|+|||||+|+++++
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 78999999988754432 3457999999999999999999975
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.1e-12 Score=121.46 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+..+|||+|||+|.++..+++. +|+++|+++.++..++..... .....+...+...+++++++||+|+++.++.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3478999999999999888765 799999999988766543321 12334555677788888899999998877655
Q ss_pred cc--------------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WT--------------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~--------------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. .+...+++++.++|||||.+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 42 2446899999999999999999975
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=128.80 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~ 329 (666)
....++.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++... ...++. ..+...|.
T Consensus 75 ~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~ 149 (318)
T 2fk8_A 75 QYAKVDLNLDKLDL----KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVL-ASIDTNRSRQVLLQGW 149 (318)
T ss_dssp HHHHHHHHHTTSCC----CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTSCCSSCEEEEESCG
T ss_pred HHHHHHHHHHhcCC----CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECCh
Confidence 34455666665542 34579999999999999888754 8999999999987776433 334443 34445566
Q ss_pred cCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..++ ++||+|++..+++|+. .+...+++++.++|||||.+++.++
T Consensus 150 ~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 150 EDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6664 7899999999877775 4667999999999999999999875
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=126.93 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=81.4
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..+|||+|||+|.++..|++. +|+|+|+++.++..++.. +...+....+...|+..+++ +++||+|+|+.+++|+.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~ 198 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNET-KEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN 198 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC
Confidence 478999999999999999876 899999999999887644 44455555666667777776 78999999998877763
Q ss_pred c-ChHHHHHHHHHhccCCeEEEEEE
Q 005981 353 R-DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 353 ~-d~~~~L~el~RvLkPGG~lv~st 376 (666)
. +...+++++.++|||||.+++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 24589999999999999988764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=119.93 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=78.3
Q ss_pred CCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccccC
Q 005981 275 IRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d 354 (666)
..+|||||||+|.++..++.. +++|+++.++..++ +++ ..+...+...+++++++||+|++..+++|+ ++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~-----~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIAR-----KRG--VFVLKGTAENLPLKDESFDFALMVTTICFV-DD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHH-----HTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGS-SC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHH-----hcC--CEEEEcccccCCCCCCCeeEEEEcchHhhc-cC
Confidence 468999999999999999877 99999998775544 332 334555678888888899999999887776 88
Q ss_pred hHHHHHHHHHhccCCeEEEEEECC
Q 005981 355 DGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 355 ~~~~L~el~RvLkPGG~lv~st~P 378 (666)
+..+|+++.++|+|||.++++.+.
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeC
Confidence 899999999999999999999753
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=120.76 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
...+.+.+.+.+. ...+|||+|||+|.++..+++. +|+++|+++.++..++.... ..+....+...++..++
T Consensus 20 ~~~~~~~~~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 20 YPEWVAWVLEQVE------PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAM-ETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHHSC------TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHH-HTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHHcC------CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhh-hcCCceEEEEcChhhcC
Confidence 3455666666654 2378999999999999999876 89999999999988775443 33444455666777777
Q ss_pred CCCCCeeEEEecc-cccccc--cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSR-CRINWT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~-~l~h~~--~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++ ++||+|+|.. +++|+. .+...+++++.++|||||.+++..+
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 76 8999999876 655552 3345899999999999999999764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=116.23 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=85.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~ 331 (666)
...+.+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.... ..+.. ..+...+...
T Consensus 39 ~~~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 39 KGTKILVENVVV----DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK-LNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHHCCC----CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HTTCTTSCEEEEECSTTT
T ss_pred hHHHHHHHHccc----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHH-HcCCCccceEEEECchhc
Confidence 345566666642 34579999999999999888865 89999999999887765443 34444 3444445444
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++++||+|+++..+++...+...+++++.++|+|||.+++.+.
T Consensus 114 -~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 114 -NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp -TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 345679999998776444234567899999999999999999974
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-12 Score=142.11 Aligned_cols=113 Identities=10% Similarity=0.073 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCce---EEeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM---VAAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~---~~~~d~ 329 (666)
...+.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+|+.++.. +++++.... +...+.
T Consensus 92 ~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~-----a~~~~~~~~~~~~~~~~~ 162 (416)
T 4e2x_A 92 FAMLARDFLATELT----GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAK-----AREKGIRVRTDFFEKATA 162 (416)
T ss_dssp HHHHHHHHHHTTTC----SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHH-----HHTTTCCEECSCCSHHHH
T ss_pred HHHHHHHHHHHhCC----CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHH-----HHHcCCCcceeeechhhH
Confidence 34455666665541 34579999999999999999876 89999999987744 444454432 222335
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+++++++||+|++..+++|+ +++..+|+++.|+|||||++++.++
T Consensus 163 ~~l~~~~~~fD~I~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 163 DDVRRTEGPANVIYAANTLCHI-PYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp HHHHHHHCCEEEEEEESCGGGC-TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCCCCEEEEEECChHHhc-CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5667778999999999998888 7899999999999999999999864
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.6e-12 Score=122.14 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC---CCC-CCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL---PYP-SQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L---pf~-d~sFDlVv~s~~ 347 (666)
...+|||||||+|.++..+++. +|+|+|+++.++..++ +++ ...+...+...+ ++. +++||+|+|+.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-----~~~-~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~ 125 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAAR-----AAG-AGEVHLASYAQLAEAKVPVGKDYDLICANFA 125 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHH-----HTC-SSCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHH-----Hhc-ccccchhhHHhhcccccccCCCccEEEECch
Confidence 3479999999999999999876 8999999998775544 332 222333343333 544 445999999888
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++ ..+...+++++.++|||||+++++++
T Consensus 126 l~--~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 126 LL--HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CC--SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hh--hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 66 48889999999999999999999975
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-12 Score=127.29 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc-cCCCCC-CCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYP-SQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~-e~Lpf~-d~sFDlVv~s~~l~ 349 (666)
+..+|||||||+|.++..+++. +|+|+|+++.++..++.+ .....+...|. +.+|++ +++||+|+|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~---- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSR---- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEE----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeC----
Confidence 3479999999999999999876 899999999888665433 33344555666 678888 8999999976
Q ss_pred ccccChHHHHHHHHHhccCCeEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv 373 (666)
.+...+++++.++|||||.++
T Consensus 119 ---~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 ---RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---SCCSGGGGGHHHHEEEEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCcEEE
Confidence 466788999999999999998
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=121.36 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||+|||+|.++..|++. +|+|+|+++.++..++.+. ...+....+...|+..++++ ++||+|+|....+++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKA-KERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-HhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 4579999999999999988876 8999999999998877543 34455555666677777765 689999986444444
Q ss_pred c--cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 T--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~--~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+...+++++.++|||||.+++..+
T Consensus 119 ~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 119 FDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 2 2356899999999999999998753
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=9e-12 Score=128.77 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc---CCeEEEeCCcchHHHHHHHHHH----------------HcC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFAL----------------ERG 319 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l~~a~~~~a~----------------~rg 319 (666)
++.+.+.+.. ....+.+|||||||+|.++..++. .+|+|+|+|+.|+..++..... ..+
T Consensus 58 ~~~l~~~l~~--~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 58 LRCLAQTFAT--GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHT--SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCC--CCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 4455555431 112457999999999985544433 2899999999999776542211 011
Q ss_pred C--------------CceEEeecccC-CCC-----CCCCeeEEEecccccccc---cChHHHHHHHHHhccCCeEEEEEE
Q 005981 320 A--------------PAMVAAFATRR-LPY-----PSQAFDLIHCSRCRINWT---RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 320 ~--------------~~~~~~~d~e~-Lpf-----~d~sFDlVv~s~~l~h~~---~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. ...+...|+.. +|+ ++++||+|+|+.++++.. ++...+|+++.|+|||||+|++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0 01123335555 554 346799999998876643 456799999999999999999984
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=134.09 Aligned_cols=122 Identities=17% Similarity=0.098 Sum_probs=90.8
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
+.+.+++.+.+.+.. ...+..+|||+|||+|.++..+++. +|+++|+++.++..++.+ +...++...+...|...
T Consensus 215 ~t~~ll~~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n-~~~~~~~v~~~~~D~~~ 291 (381)
T 3dmg_A 215 ASLLLLEALQERLGP--EGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKG-LEANALKAQALHSDVDE 291 (381)
T ss_dssp HHHHHHHHHHHHHCT--TTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHH-HHHTTCCCEEEECSTTT
T ss_pred HHHHHHHHHHHhhcc--cCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEcchhh
Confidence 444555555554421 1124579999999999999998876 899999999999887754 44455555666667777
Q ss_pred CCCCCCCeeEEEeccccccc----ccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 332 LPYPSQAFDLIHCSRCRINW----TRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~----~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
.+.++++||+|+|+..+++. ..+...++.++.++|||||.++++..+
T Consensus 292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 77667899999988775541 234568999999999999999999754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=127.90 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHc------CC-CceEEeecccCCC----CC--CC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------GA-PAMVAAFATRRLP----YP--SQ 337 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~r------g~-~~~~~~~d~e~Lp----f~--d~ 337 (666)
+..+|||||||+|.++..+++. +|+++|+++.++..++....... +. ...+...|.+.++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 4579999999999999888754 89999999999988876554331 11 2345555677665 53 45
Q ss_pred CeeEEEecccccccc-cC---hHHHHHHHHHhccCCeEEEEEEC
Q 005981 338 AFDLIHCSRCRINWT-RD---DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 338 sFDlVv~s~~l~h~~-~d---~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+||+|+|+.+ +||. .+ ...+|.++.++|||||.++++++
T Consensus 114 ~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 114 CFDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CEEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 9999999876 5554 34 35899999999999999999975
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=120.97 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC--CCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR--LPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~--Lpf~d~sFDlVv~s~~l~ 349 (666)
+..+|||+|||+|.++..+++. +++++|+++.++..+ +++. . .+...++.. +++++++||+|+++.+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~-----~~~~-~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQA-----KEKL-D-HVVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHH-----HTTS-S-EEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHH-----HHhC-C-cEEEcchhhcCCCCCCCccCEEEECChhh
Confidence 4579999999999999988876 899999999876443 3332 2 344445554 667788999999998877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+ .++..++.++.++|+|||.++++++
T Consensus 105 ~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 105 HL-FDPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp GS-SCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred hc-CCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 77 7889999999999999999999874
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=121.37 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecc-cccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR-CRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~-~l~h 350 (666)
+..+|||||||+|.++..+++. +|+|+|+++.++..++. +.....+...++..+++ +++||+|+|+. +++|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-----~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~ 113 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARK-----RLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY 113 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHH-----HCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHH-----hCCCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence 4579999999999999988876 79999999988865543 22233455567777777 68999999765 5445
Q ss_pred cc--cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~--~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. .+...+|+++.++|||||.++++..
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 114 LKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp CCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 42 3346899999999999999999853
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=127.42 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCchhHHHhc--cC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLL--PR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~--~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
+..+|||||||+|.++..++ .. +|+|+|+++.++..++.+ ....+.. ..+...|+..++++ ++||+|+|+.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRL-AAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHH-HTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHH-HHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 45789999999999999985 22 899999999998777643 3334443 34566678888887 9999999988
Q ss_pred cccccccChHH---HHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDDGI---LLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~~~---~L~el~RvLkPGG~lv~st~ 377 (666)
+++|+ .+... +++++.++|||||+++++..
T Consensus 196 ~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 196 LNIYE-PDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp SGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 87777 55553 79999999999999999863
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=113.16 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=79.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecc-c
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-R 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~-e 330 (666)
.+...+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...+. +
T Consensus 12 ~~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~~~ 86 (178)
T 3hm2_A 12 HVRALAISALAP----KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN-AINLGVSDRIAVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHCC----CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH-HHTTTCTTSEEEECCTTG
T ss_pred HHHHHHHHHhcc----cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-HHHhCCCCCEEEecchHh
Confidence 344555555541 34579999999999999888765 799999999988777643 3444554 33333333 3
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++...++||+|+++..+.+ ..+++++.++|||||.+++.+.
T Consensus 87 ~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 87 AFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred hhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 44433389999998877544 6789999999999999999864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=118.31 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+..+|||+|||+|.++..+++. +|+++|+++.++..++.. +...+.. ..+...|... +.+++||+|+++..+.
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEEN-AALNGIYDIALQKTSLLA--DVDGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEeccccc--cCCCCceEEEECCcHH
Confidence 4579999999999999888765 799999999998877654 3344544 3444444433 4468999999876643
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ ...+++++.++|||||.+++++.
T Consensus 137 ~----~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 137 I----LLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp H----HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred H----HHHHHHHHHHhcCCCCEEEEEec
Confidence 3 36889999999999999999854
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=124.65 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCC-CCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPY-PSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf-~d~sFDlVv~s~~ 347 (666)
+..+|||||||+|.++..++.. +|+|+|+++.++..++... ...+. ...+...++..+++ ++++||+|+|..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 4579999999999888877653 8999999999988776443 33333 23455557777787 5789999999888
Q ss_pred cccc---ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINW---TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~---~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++. ..+...+|+++.++|||||.++++++
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 6552 24556899999999999999999974
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=111.58 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEec-ccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS-RCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s-~~l~h 350 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++. +.....+...+...+++++++||+|+++ .++++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~-----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQ-----DFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH-----HCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHH-----hCCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 4579999999999999888866 89999999987765543 2222345556777778888899999987 45444
Q ss_pred cc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. ++...++.++.++|+|||.+++...
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 42 2346899999999999999999864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=129.02 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC------------------------------
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG------------------------------ 319 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg------------------------------ 319 (666)
...+|||||||+|.++..|+.. +|+|+|+++.++..|+........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4579999999999998888754 899999999998877643221100
Q ss_pred ----------------------------CCceEEeecccCC-----CCCCCCeeEEEecccccccc-----cChHHHHHH
Q 005981 320 ----------------------------APAMVAAFATRRL-----PYPSQAFDLIHCSRCRINWT-----RDDGILLLE 361 (666)
Q Consensus 320 ----------------------------~~~~~~~~d~e~L-----pf~d~sFDlVv~s~~l~h~~-----~d~~~~L~e 361 (666)
....+...|.... ++.+++||+|+|..++.++. .+...+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 0123333343332 25678999999988754431 145689999
Q ss_pred HHHhccCCeEEEEEEC
Q 005981 362 VNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 362 l~RvLkPGG~lv~st~ 377 (666)
++++|||||+|++...
T Consensus 206 ~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHEEEEEEEEEECC
T ss_pred HHHHhCCCcEEEEecC
Confidence 9999999999999853
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=125.64 Aligned_cols=109 Identities=12% Similarity=0.046 Sum_probs=79.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC-
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY- 334 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf- 334 (666)
.++.+.+.+.. .+..+|||||||+|.++..|+++ +|+|+|+|+.|+..++.+... . ....+.+.++.
T Consensus 33 ~~~~il~~l~l----~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~-~-----~v~~~~~~~~~~ 102 (261)
T 3iv6_A 33 DRENDIFLENI----VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD-R-----CVTIDLLDITAE 102 (261)
T ss_dssp HHHHHHHTTTC----CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS-S-----CCEEEECCTTSC
T ss_pred HHHHHHHhcCC----CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh-c-----cceeeeeecccc
Confidence 34555665542 34579999999999999999876 899999999998766543221 1 11122333332
Q ss_pred ----CCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 ----PSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ----~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++||+|+|+.+++|+. ++...+++++.++| |||.++++..
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 257899999998888874 33458999999999 9999999964
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-10 Score=111.37 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=80.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~ 331 (666)
.....+.+.+.. .+..+|||+|||+|.++..+++. +|+++|+++.++..++.+.. ..+... .+...+...
T Consensus 27 ~i~~~~l~~l~~----~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~ 101 (204)
T 3e05_A 27 EVRAVTLSKLRL----QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLK-KFVARNVTLVEAFAPE 101 (204)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHH-HHTCTTEEEEECCTTT
T ss_pred HHHHHHHHHcCC----CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCcEEEEeCChhh
Confidence 333445555542 34579999999999998888754 79999999999988875443 344433 344445433
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.....++||+|++..... +...++.++.++|||||.+++.+.
T Consensus 102 ~~~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 102 GLDDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp TCTTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 333347899999876532 678999999999999999999864
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.4e-11 Score=115.99 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
+..+|||||||+|.++..+. .+|+++|+++. ...+...++..+++++++||+|+|+.++ |+ .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-S
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cc-c
Confidence 34689999999999998885 68999999985 1224455677888888999999998876 55 7
Q ss_pred ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 354 DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...+|.++.++|+|||.+++++.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEc
Confidence 889999999999999999999864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.5e-11 Score=120.73 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=102.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEecc-ccccCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAG-LFSVES 596 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~-~f~~~~ 596 (666)
..|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++.- +.+.....+.++. +.+||+|.|.. +|.+..
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG-----TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred CcEEEeCCcCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence 4699999999999999999976 5666763 678888888733 4455444444443 79999999997 888876
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeC-----------------------------------------------h-----
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDS-----------------------------------------------I----- 624 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~-----------------------------------------------~----- 624 (666)
+.-+...+|.++.|+|||||+++|.+. .
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 555567899999999999999999520 0
Q ss_pred ---------hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 625 ---------DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 625 ---------~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
-..+++++++++-.+++....... ....+++++|+
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~---~~~~~~va~K~ 249 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGP---SGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTT---TSSCEEEEEEC
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCC---CCceeEEEecC
Confidence 026889999999999887664433 35678999985
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=115.65 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCC---CCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP---SQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~---d~sFDlVv~s 345 (666)
...+|||||||+|.++..++. .+|+++|+++.++..++.. +...++. ..+...+++.+++. +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKL-SEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 457999999999998888772 2899999999999877644 4444553 34555566666653 5799999975
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+ .+...++.++.++|||||.+++..
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 52 667899999999999999999874
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.1e-11 Score=114.53 Aligned_cols=135 Identities=14% Similarity=0.131 Sum_probs=102.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
..|||+|||.|.++.+|++.|. +|+.+|. +.+++.+.++.- +.+.....+.++.-+.+||+|.+..++.+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 116 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH-----QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG- 116 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC-----CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC-
T ss_pred CeEEEecCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC-
Confidence 3599999999999999999976 5666663 678888888743 4444444444443348999999999988875
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeCh----------------hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
.-+...+|.++.|+|||||++++.+.. -..+.++++++...|++.......+ .+...|...|
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~ 194 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA 194 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence 236689999999999999999998522 1378899999999999887765544 5666666655
Q ss_pred C
Q 005981 662 R 662 (666)
Q Consensus 662 ~ 662 (666)
+
T Consensus 195 ~ 195 (203)
T 3h2b_A 195 S 195 (203)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-11 Score=114.29 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCC-CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP-YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lp-f~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..+++. +|+|+|+++.++..++.. +...++ ...+...|+..++ +.+++||+|+++
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-HHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 4479999999999988887653 899999999999887754 344444 2345555666665 566899999987
Q ss_pred cccccc-----cc---ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINW-----TR---DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~-----~~---d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..++.. .. +...+++++.++|||||.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 654221 11 234799999999999999999864
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.1e-11 Score=119.98 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=82.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcc------hHHHHHHHHHHHcCCC--ce
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPK------DVHENQIQFALERGAP--AM 323 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~------~l~~a~~~~a~~rg~~--~~ 323 (666)
.....+.+.+.. .+..+|||||||+|.++..+++ .+|+|+|+++. ++..++.+. ...++. ..
T Consensus 30 ~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~v~ 104 (275)
T 3bkx_A 30 AHRLAIAEAWQV----KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDRLT 104 (275)
T ss_dssp HHHHHHHHHHTC----CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGGEE
T ss_pred HHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCceE
Confidence 344455555431 3457999999999998888764 37999999997 787776443 333432 23
Q ss_pred EEeec---ccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 324 VAAFA---TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 324 ~~~~d---~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...| ...+++++++||+|+|..+++|+ .++..+++.+.++++|||++++.+.
T Consensus 105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYF-ASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp EECSCCTTTCCGGGTTCCCSEEEEESCGGGS-SCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEECChhhhccCCCCCCCEEEEEEccchhhC-CCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 44444 45567778999999999987777 7777777777777777999999864
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=115.37 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC--CCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp--f~d~sFDlVv~s~ 346 (666)
...+|||||||+|.++..++.. +|+|+|+++.++..++.+. ...++. ..+...++..++ +++++||+|+++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKV-LEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHH-HHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3478999999999998888753 8999999999998877544 344543 345555666666 7778999999875
Q ss_pred ccccccc--------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~--------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+|.. ....++.++.++|+|||.+++.+.
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred C-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 4 33322 125799999999999999999863
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=113.19 Aligned_cols=134 Identities=18% Similarity=0.240 Sum_probs=98.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccccccCCCC---CCCC-CccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPF---DTYP-RTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~---~~yp-~tyDliha~~~f~~ 594 (666)
.+|||+|||.|.++.+|++.|. +|+.+| ++.+++.+.+++.+.+.....+.+ +..+ .+||+|.|..++.
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI-----EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-
T ss_pred CEEEEeCCCCCHHHHHHHHCCC-----EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-
Confidence 6799999999999999999976 566666 368899999986655544333333 3234 5699999998887
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEeCh--------------------------------hHHHHHHHHHHhcCcEEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------------------------DVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~--------------------------------~~~~~~~~i~~~l~W~~~ 642 (666)
. .+...+|.++.|+|||||+++|.+.. -..+.+.+++++-.+++.
T Consensus 128 ~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 128 H---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp S---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred h---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 2 34579999999999999999997531 146889999999999987
Q ss_pred EEeccCCCC---CceEEEEEEeC
Q 005981 643 LRETAEGPH---ASYRILTADKR 662 (666)
Q Consensus 643 ~~~~~~~~~---~~e~~l~~~k~ 662 (666)
.......+. ....+++++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 205 SLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEecCCCCCCCCceeEEEEeecC
Confidence 654422221 23567777774
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-11 Score=121.17 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCC-----CCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-----QAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d-----~sFDlVv~s~ 346 (666)
+..+|||||||+|.++..|++. +|+|+|+++.++..++... ......+...|+..+++.. ..||+|+++.
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEcc
Confidence 4478999999999999998875 8999999999887665332 1123345555655544321 3499999988
Q ss_pred ccccccc--ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~--d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++|+ + +...+++++.++|||||++++..+
T Consensus 133 ~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 133 GFHHI-PVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSTTS-CGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 86666 5 567999999999999999988865
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-11 Score=120.40 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC-C--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL-P--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L-p--f~d~sFDlVv~s 345 (666)
...+|||||||+|.++..++.. +|+|+|+++.++..++. .+.+.++.+ .+...|+..+ + +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~-~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLA-SAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 4478999999999999888754 69999999999988764 444555543 4445555553 3 678999999976
Q ss_pred ccccccccCh--------HHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~--------~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. ..|.... ..++.++.|+|||||.|++++.
T Consensus 113 ~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 113 FP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp SC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 43 4443221 2599999999999999999974
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-11 Score=121.53 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC------------------------------
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA------------------------------ 320 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~------------------------------ 320 (666)
++.+|||||||+|.++..++.. +|+|+|+++.++..++..... .+.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKK-EPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTT-CTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhc-CCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4578999999999998888765 799999999998777643321 110
Q ss_pred Cc-eEEeecccCCC-CCC---CCeeEEEecccccccc---cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 321 PA-MVAAFATRRLP-YPS---QAFDLIHCSRCRINWT---RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 321 ~~-~~~~~d~e~Lp-f~d---~sFDlVv~s~~l~h~~---~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. .+...++..+. +++ ++||+|+|+.++++.. .+...+|+++.|+|||||+|++...
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 02 34455555543 355 8999999998877443 3466899999999999999999863
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-11 Score=117.66 Aligned_cols=102 Identities=11% Similarity=0.195 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC--CCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp--f~d~sFDlVv~s~ 346 (666)
...+|||||||+|.++..|+.. +|+|+|+++.++..++.+ +.+.++. ..+...|+..++ +++++||.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~-~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK-VKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHH-HHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 3468999999999999888753 799999999999887644 4445554 345555666665 6788999998654
Q ss_pred cccccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. ..|... ...++.++.++|||||.+++.+.
T Consensus 117 ~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 S-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred C-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 333221 25789999999999999999873
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=112.52 Aligned_cols=97 Identities=12% Similarity=-0.006 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++. .++..++. ..+...|..........||+|++...
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~-- 131 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG-- 131 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC--
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc--
Confidence 4579999999999999888765 89999999999988764 44455655 34445555552223357999997653
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+.. ++.++.++|||||.+++++.
T Consensus 132 ---~~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 132 ---GSQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp ---CCHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred ---ccHH-HHHHHHHhcCCCcEEEEEec
Confidence 2556 99999999999999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=118.73 Aligned_cols=91 Identities=18% Similarity=0.337 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+..+|||||||+|.++..+++. +|+++|+++.++..++ +++....+...+.+.+++++++||+|++..+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-----~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA-----KRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-- 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH-----HHCTTSEEEECCTTSCSBCTTCEEEEEEESC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-----HhCCCcEEEEcchhhCCCCCCceeEEEEeCC--
Confidence 4579999999999998888764 8999999998775543 3333445666677888888899999997644
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...+.++.|+|||||.+++.++
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred ------hhhHHHHHHhcCCCcEEEEEEc
Confidence 2358999999999999999875
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-11 Score=116.44 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=75.4
Q ss_pred CCCeEEEECCC-CchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-CCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-Lpf~d~sFDlVv~s~~l 348 (666)
+..+|||+||| +|.++..++.. +|+|+|+++.++..++.+ +...+....+...|... .++++++||+|+|+..+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRN-IERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHH-HHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 45799999999 99988887754 899999999999887754 44455544555555432 24567899999987654
Q ss_pred ccccc------------------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTR------------------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~------------------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++... ....++.++.++|||||.+++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 43211 136789999999999999999753
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.9e-11 Score=111.89 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=85.6
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceE
Q 005981 250 QFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMV 324 (666)
Q Consensus 250 ~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~ 324 (666)
......+.+.+.+.+.+... ....+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..++. ..+
T Consensus 23 ~~rp~~~~~~~~~~~~l~~~---~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~ 98 (187)
T 2fhp_A 23 NTRPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA-ITKEPEKFEV 98 (187)
T ss_dssp SSCCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHTCGGGEEE
T ss_pred CcCcCHHHHHHHHHHHHHhh---cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH-HhCCCcceEE
Confidence 33455666777777777532 24579999999999998877654 79999999999988775443 33432 334
Q ss_pred EeecccC----CCCCCCCeeEEEecccccccccChHHHHHHH--HHhccCCeEEEEEEC
Q 005981 325 AAFATRR----LPYPSQAFDLIHCSRCRINWTRDDGILLLEV--NRMLRAGGYFAWAAQ 377 (666)
Q Consensus 325 ~~~d~e~----Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el--~RvLkPGG~lv~st~ 377 (666)
...|+.. +++.+++||+|+++.. ++. .+....+..+ .++|+|||.+++...
T Consensus 99 ~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 99 RKMDANRALEQFYEEKLQFDLVLLDPP-YAK-QEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCC-GGG-CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EECcHHHHHHHHHhcCCCCCEEEECCC-CCc-hhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 4445433 2223678999998765 333 4566777777 899999999999864
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=123.59 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=78.7
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+..+|||||||+|.++..++++ +|+|+|+++ ++..++. .+...+.. ..+...+++++++++++||+|+|..+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVK-IVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHH-HHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHH-HHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 3479999999999999888876 899999995 8877764 45555654 456666788888888999999986532
Q ss_pred --cccccChHHHHHHHHHhccCCeEEEEE
Q 005981 349 --INWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 349 --~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
++...+...++.++.|+|||||.++..
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 233356779999999999999998754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-11 Score=117.15 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=81.7
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC---CceEEee
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAF 327 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~---~~~~~~~ 327 (666)
..+.+.+.+.+.+.... ...+|||+|||+|.++..++.+ +|+|+|+++.++..++.+. ...++ ...+...
T Consensus 36 ~~~~~~~~l~~~l~~~~---~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~v~~~~~ 111 (201)
T 2ift_A 36 TGDRVKETLFNWLMPYI---HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNL-QTLKCSSEQAEVINQ 111 (201)
T ss_dssp --CHHHHHHHHHHHHHH---TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCTTTEEEECS
T ss_pred CHHHHHHHHHHHHHHhc---CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHH-HHhCCCccceEEEEC
Confidence 33445555555554211 2368999999999998875543 7999999999998887544 44554 3344555
Q ss_pred cccCC-C-CCCCC-eeEEEecccccccccChHHHHHHH--HHhccCCeEEEEEECC
Q 005981 328 ATRRL-P-YPSQA-FDLIHCSRCRINWTRDDGILLLEV--NRMLRAGGYFAWAAQP 378 (666)
Q Consensus 328 d~e~L-p-f~d~s-FDlVv~s~~l~h~~~d~~~~L~el--~RvLkPGG~lv~st~P 378 (666)
|+..+ + +.+++ ||+|++... ++. .+...++.++ .|+|||||.+++++.+
T Consensus 112 d~~~~~~~~~~~~~fD~I~~~~~-~~~-~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 112 SSLDFLKQPQNQPHFDVVFLDPP-FHF-NLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CHHHHTTSCCSSCCEEEEEECCC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CHHHHHHhhccCCCCCEEEECCC-CCC-ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 54443 2 23678 999998766 443 5566888888 6789999999998753
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=112.96 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=81.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp 333 (666)
.....+.+.+.. .+..+|||||||+|.++..+++. +|+++|+++.++..++.+.. ..+.. ..+...|.....
T Consensus 64 ~~~~~~~~~l~~----~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 64 YMVARMTELLEL----TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLK-NLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcCC----CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCceEEEECCcccCC
Confidence 445555665542 34579999999999999888765 89999999999887775443 34443 344555665655
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+++||+|++..++.++ .+ ++.++|||||.+++...
T Consensus 139 ~~~~~~D~i~~~~~~~~~-~~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEI-PT------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp GGGCCEEEEEESSBCSSC-CT------HHHHTEEEEEEEEEEEC
T ss_pred ccCCCccEEEEccchhhh-hH------HHHHhcccCcEEEEEEc
Confidence 567899999998876666 32 68999999999999864
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-10 Score=132.07 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHH-----cCCC-ce
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALE-----RGAP-AM 323 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~-----rg~~-~~ 323 (666)
....++.+.+.+.. ..+.+|||||||+|.++..|++. +|+|+|+++.++..|+.+.... .+.. ..
T Consensus 706 ~eqRle~LLelL~~----~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVe 781 (950)
T 3htx_A 706 SKQRVEYALKHIRE----SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT 781 (950)
T ss_dssp HHHHHHHHHHHHHH----SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEE
T ss_pred HHHHHHHHHHHhcc----cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceE
Confidence 34556666666653 24579999999999999999864 6999999999998887544432 1332 34
Q ss_pred EEeecccCCCCCCCCeeEEEecccccccccChH--HHHHHHHHhccCCeEEEEEEC
Q 005981 324 VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 324 ~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~--~~L~el~RvLkPGG~lv~st~ 377 (666)
+...|+..+++.+++||+|+|..+++|+ .+.. .+++++.|+|||| .++++++
T Consensus 782 fiqGDa~dLp~~d~sFDlVV~~eVLeHL-~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 782 LYDGSILEFDSRLHDVDIGTCLEVIEHM-EEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEESCTTSCCTTSCSCCEEEEESCGGGS-CHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEECchHhCCcccCCeeEEEEeCchhhC-ChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 5666788899988999999999998887 4443 6899999999999 8878764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=111.57 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=85.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.+|||+|||.|.++.+|++.|. +|+.+|. +.+++.+.++ |+ +.+.+...+.++. +.+||+|.+..++
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY-----DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchh
Confidence 3799999999999999999976 5556653 4566665543 43 4444444344443 7899999999988
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh--------------hHHHHHHHHHHhcCcEEEEEec
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------DVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~--------------~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
.+... -+...+|.++.|+|||||++++.+.. -..+.++++++. |++.....
T Consensus 108 ~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 108 MFLEA-KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNE 172 (199)
T ss_dssp GGSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence 87652 35679999999999999998875321 135678888887 88766543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=113.53 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC----CCCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~----Lpf~d~sFDlVv~ 344 (666)
.++.+|||+|||+|.++..+++ .+|+|+|+|+.++.... +.++.+. .......|... .++. ++||+|+|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~-~~a~~~~-~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHhcCC-CeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 3457999999999998887765 37999999998875443 4454442 22333344444 3444 79999998
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+. ..+ .+...+++++.|+|||||.|+++.
T Consensus 133 ~~-~~~--~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI-AQK--NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC-CST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-cCh--hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 62 122 223356899999999999999984
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=121.02 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=81.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~ 331 (666)
.+.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++ ++..++. .....+. ...+...+++.
T Consensus 51 ~~~~~i~~~~~~----~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~-~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 51 SYRDFIYQNPHI----FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMD-IIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHCGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHH-HHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhhhhh----cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHH-HHHHcCCCCcEEEEEeeHHH
Confidence 345566555432 34579999999999999888765 799999997 8877654 4444554 23455567888
Q ss_pred CCCCCCCeeEEEecccc--cccccChHHHHHHHHHhccCCeEEE
Q 005981 332 LPYPSQAFDLIHCSRCR--INWTRDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l--~h~~~d~~~~L~el~RvLkPGG~lv 373 (666)
+++++++||+|++..+. ++...+...++.++.|+|||||.++
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 88888899999986532 2222445689999999999999997
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-10 Score=119.28 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=74.2
Q ss_pred CCCCeEEEECCCCchhHHHh-c---cCCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAYL-L---PRNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L-~---~~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.++.+|||||||+|.++..+ + ..+|+|+|+++.++..|+...+ +.++. ..+...|+..++ +++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~-~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE-GLGVDGVNVITGDETVID--GLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHH-HHTCCSEEEEESCGGGGG--GCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH-hcCCCCeEEEECchhhCC--CCCcCEEEECCC
Confidence 45689999999999765433 2 3389999999999988875544 34543 344555666665 689999997543
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.++...+++++.|+|||||.+++..
T Consensus 198 ----~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 198 ----AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ----CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ----ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 3778899999999999999999985
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=113.65 Aligned_cols=119 Identities=9% Similarity=0.021 Sum_probs=83.0
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeec
Q 005981 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-PAMVAAFA 328 (666)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d 328 (666)
...+.+.+.+.+.+.... +..+|||+|||+|.++..++.+ +|+++|+++.++..++.+ +...++ ...+...|
T Consensus 36 p~~~~~~~~l~~~l~~~~---~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~-~~~~~~~~v~~~~~D 111 (202)
T 2fpo_A 36 PTTDRVRETLFNWLAPVI---VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-LATLKAGNARVVNSN 111 (202)
T ss_dssp --CHHHHHHHHHHHHHHH---TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCSEEEECSC
T ss_pred CCHHHHHHHHHHHHHhhc---CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECC
Confidence 344555666666554211 3478999999999999875543 799999999999888754 444454 33445555
Q ss_pred ccC-CCCCCCCeeEEEecccccccccChHHHHHHHHH--hccCCeEEEEEEC
Q 005981 329 TRR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~-Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~R--vLkPGG~lv~st~ 377 (666)
+.. ++..+++||+|++... ++. .+...++.++.+ +|+|||.++++..
T Consensus 112 ~~~~~~~~~~~fD~V~~~~p-~~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 112 AMSFLAQKGTPHNIVFVDPP-FRR-GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHHSSCCCCEEEEEECCS-SST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHhhcCCCCCEEEECCC-CCC-CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 444 4556679999998765 443 566778888865 5999999999864
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-10 Score=110.12 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=97.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc-----------ccccccccCCCCCCCCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----------LIGVMHDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG-----------lig~~~~~ce~~~~yp~tyDlih 587 (666)
..|||+|||.|.++.+|++.+- ..+|+.+| ++.+++.+.++- -+.++....+..+.-+.+||+|.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKS---FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTT---CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred CEEEEecCCCCHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4799999999999999999851 12566666 357777776651 23344433333332237999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------------HHHHHH----HHHHhcCcEE
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------------VMDELQ----EIGKAMGWHV 641 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------------~~~~~~----~i~~~l~W~~ 641 (666)
|..++.+..+. .+..+|.++.|+|||||.+++.+..+ ..+.++ .++++-.+++
T Consensus 108 ~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 108 VIEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp EESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred EHHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 99999988532 34689999999999999888764332 123344 8888999998
Q ss_pred EEEeccCC---CCCceEEEEEEeC
Q 005981 642 TLRETAEG---PHASYRILTADKR 662 (666)
Q Consensus 642 ~~~~~~~~---~~~~e~~l~~~k~ 662 (666)
......++ -..+.+|.||+|.
T Consensus 187 ~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 187 RFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEecCCccccCCCCeEEEEEecc
Confidence 87632222 2467899999985
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=116.70 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-----cCCC-ceEEeecccC-CC--CCCCCee
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-----RGAP-AMVAAFATRR-LP--YPSQAFD 340 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-----rg~~-~~~~~~d~e~-Lp--f~d~sFD 340 (666)
...+|||||||+|.++..|+.. +|+|+|+++.++..++.+.... .+.. ..+...|+.. ++ +++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 3468999999999999998864 7999999999998776543321 2333 3455556655 66 7789999
Q ss_pred EEEecccccccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.|++... ..|... ...+++++.++|||||.|++.+.
T Consensus 126 ~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 9986433 333211 14799999999999999999863
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-10 Score=121.96 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=83.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~ 331 (666)
.+.+.+.+.+.. .+..+|||||||+|.++..++++ +|+|+|++ .++..++ +.+...++. ..+...+++.
T Consensus 50 ~~~~~i~~~~~~----~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 50 AYFNAVFQNKHH----FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHHHHHHTTTTT----TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHhcccc----CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhh
Confidence 345555544331 34579999999999999888875 89999999 8887775 445555654 3556667888
Q ss_pred CCCCCCCeeEEEecccccccc--cChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWT--RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~--~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++ ++||+|+|..+.+... .....++.++.++|||||.++++.
T Consensus 124 ~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 124 ISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 8877 8999999855433332 446689999999999999998763
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=109.80 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
......+.+.+.+.+.... ....+|||+|||+|.++..++.. +|+|+|+++.++..++.+... .+....+...|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~d~ 97 (171)
T 1ws6_A 21 RPSPVRLRKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRR-TGLGARVVALPV 97 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH-HTCCCEEECSCH
T ss_pred CCCHHHHHHHHHHHHHhhc--cCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH-cCCceEEEeccH
Confidence 3445556666666654211 13478999999999999888865 799999999999888754443 343444444454
Q ss_pred cC-CC-C--CCCCeeEEEecccccccccChHHHHHHHH--HhccCCeEEEEEEC
Q 005981 330 RR-LP-Y--PSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~-Lp-f--~d~sFDlVv~s~~l~h~~~d~~~~L~el~--RvLkPGG~lv~st~ 377 (666)
.. ++ + ..++||+|+++..++ .+...++..+. ++|||||.+++++.
T Consensus 98 ~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 98 EVFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 33 22 1 134899999876533 44566777777 99999999999875
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-10 Score=117.42 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=79.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCC---chhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGV---ASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGt---G~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
.+++++.+.+.. .....+|||||||+ |.++..+.. .+|+++|+|+.|+..++..... .....+...|+
T Consensus 63 ~~~~~~~~~l~~---~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~ 137 (274)
T 2qe6_A 63 KVLVRGVRFLAG---EAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADV 137 (274)
T ss_dssp HHHHHHHHHHHT---TTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCT
T ss_pred HHHHHHHHHHhh---ccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeC
Confidence 344444444431 12347999999999 987665532 3899999999999877654421 12234445554
Q ss_pred cCC-----------CCCCCCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRL-----------PYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~L-----------pf~d~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+. .++..+||+|+++.+++|+.++ ...+|+++.++|||||+|+++..
T Consensus 138 ~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 138 RDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 331 1233589999988887766432 67999999999999999999975
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=106.07 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--------CCCCCe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--------f~d~sF 339 (666)
.+..+|||+|||+|.++..+++ .+++++|+++ ++.. ....+...+...++ +++++|
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 3457999999999988877754 3899999998 6521 12334445666655 667899
Q ss_pred eEEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEEEC
Q 005981 340 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 340 DlVv~s~~l~h~~~d~-----------~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+|+++.. .++..+. ..++.++.++|+|||.+++++.
T Consensus 90 D~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 90 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCC-ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99998766 4443444 6889999999999999999865
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-11 Score=122.94 Aligned_cols=92 Identities=21% Similarity=0.162 Sum_probs=74.4
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
.|||+|||+|.++..|++++. +|+.+| ++.|++.+.++.-+...+.-.|.++.-+++||+|.|..+|.+.
T Consensus 42 ~vLDvGcGtG~~~~~l~~~~~-----~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~---- 112 (257)
T 4hg2_A 42 DALDCGCGSGQASLGLAEFFE-----RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF---- 112 (257)
T ss_dssp EEEEESCTTTTTHHHHHTTCS-----EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC----
T ss_pred CEEEEcCCCCHHHHHHHHhCC-----EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHh----
Confidence 599999999999999999987 566666 3577777766555667777777776434999999999888432
Q ss_pred CHHHHHHHhhhcccCCeEEEEE
Q 005981 600 NMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.+.++.|+.|+|||||.|++-
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEE
Confidence 4579999999999999999885
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=116.95 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||+|||+|.++..+++. +|+|+|+++.++..++.+ +...++...+...+... ++++++||+|+++... +
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n-~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~-~- 195 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEAN-AKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA-E- 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHH-HHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH-H-
T ss_pred CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChhh-cCcCCCCCEEEECCcH-H-
Confidence 3479999999999998888765 899999999999887754 44455443343334333 1446789999986542 2
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
....++.++.++|||||++++++.
T Consensus 196 --~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 196 --LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEEEee
Confidence 246899999999999999999864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-10 Score=105.77 Aligned_cols=109 Identities=8% Similarity=0.061 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~L 332 (666)
....+.+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++... ...++. ..+...+...
T Consensus 21 ~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNL----NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNL-AKFNIKNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHHHCC----CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHH-HHTTCCSEEEEESCHHH-
T ss_pred HHHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HHcCCCcEEEEECCccc-
Confidence 4455566665542 34579999999999999888765 8999999999988776543 344443 3344445444
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++++||+|+++.+ .+...+++++.++ |||.+++.+.
T Consensus 95 ~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 566689999998766 5678899999999 9999999864
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-10 Score=115.40 Aligned_cols=97 Identities=16% Similarity=0.010 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCC---CCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP---SQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~---d~sFDlVv~s 345 (666)
...+|||||||+|..+..|+. .+|+++|+++.++..++. .+...++. ..+...+++.++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVER-AIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 457999999999988777663 389999999999988764 44445554 34555566666543 4799999975
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+ .+...++.++.++|||||.|++..
T Consensus 159 a~-----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 159 AV-----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp SS-----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Cc-----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 43 466889999999999999998865
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-10 Score=112.57 Aligned_cols=132 Identities=19% Similarity=0.281 Sum_probs=97.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc--cccccccCCCCCCCCCccceEEeccccccCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl--ig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
..|||+|||.|.++.+|++++. +|+.+|. +.+++.+.++.- +.+.....+.++ ++.+||+|.|..+|.+..
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGR-----TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFE-VPTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCC-CCSCCSEEEEESCGGGSC
T ss_pred CeEEEeCCCCCHHHHHHHhCCC-----eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcC-CCCCeEEEEECcchhcCC
Confidence 4699999999999999999976 6677773 678888877732 445544444443 238999999999998876
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeCh----h---------------------------HHHHHHHHHHhcCcEEEEEe
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSI----D---------------------------VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~~----~---------------------------~~~~~~~i~~~l~W~~~~~~ 645 (666)
+. ....+|.|+.|+|||||+++|.+.. . ..+.+++++++-.+++....
T Consensus 121 ~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 121 DD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp HH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 53 1124999999999999999998521 0 13678889999999887665
Q ss_pred ccCCCCCceEEEEEEeC
Q 005981 646 TAEGPHASYRILTADKR 662 (666)
Q Consensus 646 ~~~~~~~~e~~l~~~k~ 662 (666)
..+ -.-++.++|+
T Consensus 200 ~~~----~~w~~~~~~~ 212 (220)
T 3hnr_A 200 LNH----FVWVMEATKQ 212 (220)
T ss_dssp CSS----SEEEEEEEEC
T ss_pred ccc----eEEEEeehhh
Confidence 432 3456666664
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=114.63 Aligned_cols=99 Identities=9% Similarity=0.143 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||+|||+|.++..++.. +|+++|+++.|+..++.+ +...|....+...+.... .+.++||+|++..++|
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~-~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSI-IGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHH-HHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence 3579999999999999998433 999999999999888754 555566633333333222 3568899999988877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
++ ++.+..+.++.+.|||||+|+--
T Consensus 127 lL-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 127 VL-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred hh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 77 77777788999999999998554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.2e-11 Score=111.78 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=78.9
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
..+...+.+.+.+... ....+|||+|||+|.++..++.. +|+|+|+++.++..++.+ +...++. ..+...|
T Consensus 14 ~~~~~~~~~~~~l~~~---~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~~d 89 (177)
T 2esr_A 14 TSDKVRGAIFNMIGPY---FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDN-IIMTKAENRFTLLKME 89 (177)
T ss_dssp ----CHHHHHHHHCSC---CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHH-HHTTTCGGGEEEECSC
T ss_pred CHHHHHHHHHHHHHhh---cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECc
Confidence 3344455666655422 24479999999999998888764 799999999998877643 3444443 2344445
Q ss_pred ccC-CCCCCCCeeEEEecccccccccChHHHHHHHH--HhccCCeEEEEEEC
Q 005981 329 TRR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~-Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~--RvLkPGG~lv~st~ 377 (666)
+.. ++..+++||+|+++..+ +. ......+..+. ++|+|||.+++...
T Consensus 90 ~~~~~~~~~~~fD~i~~~~~~-~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 90 AERAIDCLTGRFDLVFLDPPY-AK-ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHHHHHBCSCEEEEEECCSS-HH-HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHhHHhhcCCCCEEEECCCC-Cc-chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 444 33334679999987553 22 33456777776 99999999999864
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-10 Score=109.84 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=93.2
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
+|||+|||.|.++.+|+++ +. +|+.+|. +.+++.+.++ |+ +.+.+...+.++.-+.+||+|.+..+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDF-----SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS 120 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEE-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred EEEEECCCCCHHHHHHHHcCCC-----eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch
Confidence 7999999999999999987 33 5666763 5777777666 43 44555555555422389999999999
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------------------------------hHHHHHHHHHHhcCcEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------------DVMDELQEIGKAMGWHV 641 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------------------------~~~~~~~~i~~~l~W~~ 641 (666)
+.+.. +...+|.|+.|+|||||.++|.+.. ...+.++++++.-.++.
T Consensus 121 l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 197 (219)
T 3dlc_A 121 VFFWE---DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197 (219)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSS
T ss_pred Hhhcc---CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCe
Confidence 88874 4579999999999999999997521 12367888889989975
Q ss_pred EEEeccCCCCCceEEEEEEeC
Q 005981 642 TLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 642 ~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.....++ ....+++.|+
T Consensus 198 v~~~~~~----~~~~~~~~k~ 214 (219)
T 3dlc_A 198 YEIILGD----EGFWIIISKT 214 (219)
T ss_dssp EEEEEET----TEEEEEEBCC
T ss_pred EEEEecC----CceEEEEecc
Confidence 4333222 1345555553
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=104.29 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=79.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRL 332 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~L 332 (666)
.....+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..+. ...+...+...
T Consensus 20 ~~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~- 93 (192)
T 1l3i_A 20 EVRCLIMCLAEP----GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ-RHGLGDNVTLMEGDAPE- 93 (192)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HTTCCTTEEEEESCHHH-
T ss_pred HHHHHHHHhcCC----CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecCHHH-
Confidence 344455555431 34579999999999999888876 89999999998887765433 3444 22334444333
Q ss_pred CCCC-CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPS-QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d-~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++. ++||+|++...+. +...++.++.++|+|||.+++...
T Consensus 94 ~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 94 ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hcccCCCCCEEEECCchH----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 2232 5899999876543 458899999999999999999864
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=117.60 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCC-cchHHHH---HHHHHHHcCCC-ceEEeecccCCCCC-CCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIA-PKDVHEN---QIQFALERGAP-AMVAAFATRRLPYP-SQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS-~~~l~~a---~~~~a~~rg~~-~~~~~~d~e~Lpf~-d~sFDlVv 343 (666)
+..+|||||||+|.++..|+.+ +|+|+|+| +.|+..| + +.+.+.++. ..+...+++.+|.. .+.+|.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~-~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII-KKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHT-SCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4478999999999999998833 79999999 6666544 2 122334544 34555677777632 25566666
Q ss_pred ecccc----cccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 344 CSRCR----INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 344 ~s~~l----~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++... .++..+...+|++++|+|||||.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 44321 1222334578999999999999999953
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=117.16 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=78.9
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeec---c
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---T 329 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d---~ 329 (666)
....|+.-+..+ .-+++.+|||+|||+|.++.++++. .|+|+|+++.|+..+.. .+.+++ .......+ .
T Consensus 62 laa~i~~gl~~l-~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~-~a~~~~-ni~~V~~d~~~p 138 (233)
T 4df3_A 62 LAAALLKGLIEL-PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-VVRDRR-NIFPILGDARFP 138 (233)
T ss_dssp HHHHHHTTCSCC-CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHH-HSTTCT-TEEEEESCTTCG
T ss_pred HHHHHHhchhhc-CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hhHhhc-CeeEEEEeccCc
Confidence 344555555433 2256789999999999999999864 79999999999977653 333332 11122222 3
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+..++..+++|+|++... ++ .+...++.++.|+|||||.++++.
T Consensus 139 ~~~~~~~~~vDvVf~d~~-~~--~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 139 EKYRHLVEGVDGLYADVA-QP--EQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp GGGTTTCCCEEEEEECCC-CT--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccceEEEEEEecc-CC--hhHHHHHHHHHHhccCCCEEEEEE
Confidence 445667789999986422 32 456789999999999999999974
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-10 Score=130.64 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccCCC-CCCCCCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWCEP-FDTYPRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~ce~-~~~yp~tyDliha~~ 590 (666)
.|||+|||+|+|+.+++..|.. .|+.+|. +.+++.+.++ |+ +.+++.-+.. +.....+||+|.++-
T Consensus 542 ~VLDlg~GtG~~sl~aa~~ga~----~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 542 DFLNLFSYTGSATVHAGLGGAR----STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp EEEEESCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cEEEeeechhHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 5999999999999999988762 3666663 5667666553 43 2333333222 122247999999864
Q ss_pred c-cccCCC-------CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEE
Q 005981 591 L-FSVESK-------RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 591 ~-f~~~~~-------~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
- |..... ......++.++-|+|+|||+++++-.......-.+.+....++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i 679 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEI 679 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeee
Confidence 2 222111 12345789999999999999999865432222245556667765443
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.2e-10 Score=110.19 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=107.2
Q ss_pred hHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccc
Q 005981 498 SKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHD 571 (666)
Q Consensus 498 ~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~ 571 (666)
.+.|.+.+..+...... .-..|||+|||.|.++..|++.+. +|+.+|. +.+++.+.++ |+ +.+.+.
T Consensus 20 ~~~~~~~~~~~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~-----~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 91 (246)
T 1y8c_A 20 YKKWSDFIIEKCVENNL---VFDDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91 (246)
T ss_dssp HHHHHHHHHHHHHTTTC---CTTEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECC
T ss_pred HHHHHHHHHHHHHHhCC---CCCeEEEeCCCCCHHHHHHHHCCC-----cEEEEECCHHHHHHHHHHHhhcCCCeEEEec
Confidence 34455555555433211 223699999999999999999976 5666774 5777777665 32 344444
Q ss_pred cCCCCCCCCCccceEEecc-ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC---------------------------
Q 005981 572 WCEPFDTYPRTYDLLHAAG-LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS--------------------------- 623 (666)
Q Consensus 572 ~ce~~~~yp~tyDliha~~-~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~--------------------------- 623 (666)
-.+.++ ++.+||+|.+.. +|.+..+.-+...+|.++.|+|||||.+++.-.
T Consensus 92 d~~~~~-~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (246)
T 1y8c_A 92 DISNLN-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWEN 170 (246)
T ss_dssp CGGGCC-CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEE
T ss_pred ccccCC-ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEec
Confidence 333333 358999999998 998875444567999999999999999998410
Q ss_pred -------------------------------hhHHHHHHHHHHhcCcEEEEEeccC-----CCCCceEEEEEEeC
Q 005981 624 -------------------------------IDVMDELQEIGKAMGWHVTLRETAE-----GPHASYRILTADKR 662 (666)
Q Consensus 624 -------------------------------~~~~~~~~~i~~~l~W~~~~~~~~~-----~~~~~e~~l~~~k~ 662 (666)
.-..+.+++++++-.+++....... +.....-+++|+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 171 QFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred ccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 0046889999999999876553221 22345668889985
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-11 Score=125.81 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=81.3
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+.+.+.+.. ....+|||+|||+|.++..+++. +|+++|+++.++..++.+. ...++...+...|... +
T Consensus 185 ~~~ll~~l~~----~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~~--~ 257 (343)
T 2pjd_A 185 SQLLLSTLTP----HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVFS--E 257 (343)
T ss_dssp HHHHHHHSCT----TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTTT--T
T ss_pred HHHHHHhcCc----CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEccccc--c
Confidence 4455555532 22468999999999998888643 8999999999998877544 3455554454444433 3
Q ss_pred CCCCeeEEEeccccccc----ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINW----TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~----~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++||+|+|+..+++. ..+...+++++.++|||||.+++...
T Consensus 258 ~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 258 VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 46899999998775531 13456899999999999999999864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-10 Score=112.82 Aligned_cols=101 Identities=19% Similarity=0.162 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHH----HcCCC-ceEEeecccCCCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL----ERGAP-AMVAAFATRRLPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~----~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~ 344 (666)
+..+|||||||+|.++..|++. +|+|+|+++.|+..+.. .++ ..+.. ..+...|++.+++++++ |.|+.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~-~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA-KAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHH-HHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 4478999999999999888764 89999999999875432 222 23443 35566678889988777 77763
Q ss_pred ccc---cc-ccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRC---RI-NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~---l~-h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
... .+ |+..++..+++++.|+|||||.++++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 221 11 233667899999999999999999974
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=111.92 Aligned_cols=155 Identities=12% Similarity=0.082 Sum_probs=106.2
Q ss_pred HhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCC
Q 005981 499 KYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPF 576 (666)
Q Consensus 499 ~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~ 576 (666)
..|......+.+.+.-....-..|||+|||.|.++..|++.+. +|+.+|. +.+++.+.++.- +.+.+...+.+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~ 95 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-----DTAGLELSEDMLTHARKRLPDATLHQGDMRDF 95 (239)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-----EEEEEESCHHHHHHHHHHCTTCEEEECCTTTC
T ss_pred hhHHHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHc
Confidence 4455554444433321002235699999999999999999864 5666663 678888877732 44444444444
Q ss_pred CCCCCccceEEe-ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-------------------------------
Q 005981 577 DTYPRTYDLLHA-AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------------- 624 (666)
Q Consensus 577 ~~yp~tyDliha-~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------------------------- 624 (666)
+. +.+||+|.| .+++.+..+.-+...+|.++.|+|||||++++.+..
T Consensus 96 ~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (239)
T 3bxo_A 96 RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE 174 (239)
T ss_dssp CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEE
T ss_pred cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecC
Confidence 43 689999996 447877755445679999999999999999996310
Q ss_pred ------------------------------hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 625 ------------------------------DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 625 ------------------------------~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
-..++++.+++.-.+++...... .....+++|+|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~---~~~~~~~va~K~ 239 (239)
T 3bxo_A 175 GNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGG---PSGRGLFVGVPA 239 (239)
T ss_dssp TTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST---TTSSCEEEEEEC
T ss_pred CCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcC---CCCceEEEEecC
Confidence 02488999999999976655432 234678899885
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=125.03 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=79.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC----ceEEeeccc
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATR 330 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~----~~~~~~d~e 330 (666)
.+.+.+.+.. ....+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...++. ..+...|..
T Consensus 211 ~~~ll~~l~~----~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~-~~ngl~~~~~v~~~~~D~~ 285 (375)
T 4dcm_A 211 ARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV-ETNMPEALDRCEFMINNAL 285 (375)
T ss_dssp HHHHHHTCCC----SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHCGGGGGGEEEEECSTT
T ss_pred HHHHHHhCcc----cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHH-HHcCCCcCceEEEEechhh
Confidence 3445666653 23379999999999999888754 7999999999998877544 334432 233444544
Q ss_pred CCCCCCCCeeEEEeccccccc--c-cC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINW--T-RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~--~-~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. ++++++||+|+|+..+++. . .. ...+++++.++|||||.++++..
T Consensus 286 ~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 286 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp T-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 4 4567899999998775542 1 11 13689999999999999999864
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-10 Score=125.37 Aligned_cols=120 Identities=10% Similarity=-0.012 Sum_probs=86.6
Q ss_pred ccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHH------HHHcCC
Q 005981 251 FIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQF------ALERGA 320 (666)
Q Consensus 251 F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~------a~~rg~ 320 (666)
|.......+..+++.+.. .+..+|||||||+|.++..++.. +|+|||+++.++..|+... +...|+
T Consensus 154 YGEt~~~~i~~il~~l~l----~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl 229 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKM----TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK 229 (438)
T ss_dssp GGGTHHHHHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred cCCCCHHHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334445566677766642 45579999999999988877642 5999999998887765432 223343
Q ss_pred ---CceEEeecccCCCCCC--CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 321 ---PAMVAAFATRRLPYPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 321 ---~~~~~~~d~e~Lpf~d--~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
...+...|+..+++.+ ..||+|+++.. +++ ++....|.++.|+|||||.|+++.
T Consensus 230 ~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-~F~-pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 230 KHAEYTLERGDFLSEEWRERIANTSVIFVNNF-AFG-PEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHTCSEEEECCT-TCC-HHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CCCCeEEEECcccCCccccccCCccEEEEccc-ccC-chHHHHHHHHHHcCCCCcEEEEee
Confidence 2345566777777654 47999998765 344 677889999999999999998874
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-10 Score=112.08 Aligned_cols=131 Identities=11% Similarity=0.025 Sum_probs=90.2
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc------------------ccc
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------------------LIG 567 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG------------------lig 567 (666)
.|...+.+..+ ..|||+|||.|.++.+|+++|+ .|+.+| ++.+++.+.+|. -+.
T Consensus 13 ~~~~~l~~~~~--~~vLD~GCG~G~~~~~la~~g~-----~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (203)
T 1pjz_A 13 QYWSSLNVVPG--ARVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 85 (203)
T ss_dssp HHHHHHCCCTT--CEEEETTTCCSHHHHHHHHHCC-----EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHhcccCCC--CEEEEeCCCCcHhHHHHHHCCC-----eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence 34444554444 3599999999999999999987 677777 568898888761 133
Q ss_pred cccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeE-EEEE-eCh----------hHHHHHHHHH
Q 005981 568 VMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGH-VYIR-DSI----------DVMDELQEIG 634 (666)
Q Consensus 568 ~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~-~ii~-d~~----------~~~~~~~~i~ 634 (666)
+++...+.++..+ .+||+|.+..+|.+... .+...++.||.|+|||||+ +++. +.. -..+++++++
T Consensus 86 ~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~-~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~ 164 (203)
T 1pjz_A 86 IWCGDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVM 164 (203)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTS
T ss_pred EEECccccCCcccCCCEEEEEECcchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHh
Confidence 4444433333222 68999999888877652 2345789999999999998 3333 211 1257788888
Q ss_pred HhcCcEEEEEec
Q 005981 635 KAMGWHVTLRET 646 (666)
Q Consensus 635 ~~l~W~~~~~~~ 646 (666)
.. .|++.....
T Consensus 165 ~~-gf~i~~~~~ 175 (203)
T 1pjz_A 165 SG-NWEVTKVGG 175 (203)
T ss_dssp CS-SEEEEEEEE
T ss_pred cC-CcEEEEecc
Confidence 87 888765443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-10 Score=108.58 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=73.2
Q ss_pred CCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
..+|||+|||+|.++..++. .+|+++|+++.++..++.. +...+.. ..+...+...++ +.++||+|++...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQV-QHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 46899999999998888764 3899999999988777643 3444544 344555666655 4578999996532
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+...++.++.++|+|||.+++..
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 556799999999999999999985
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.8e-10 Score=115.65 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceE-EeecccCCC---CCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLP---YPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~-~~~d~e~Lp---f~d~sFDlVv~s~ 346 (666)
.+.+|||||||||.++..|++. +|+|+|+++.|++.+.. ....... ...++..+. ++..+||+|+|..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r-----~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR-----QDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH-----TCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH-----hCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 4579999999999999888765 79999999999865422 1111111 111222222 3345699999876
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEECCC
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~ 379 (666)
++++ ...+|.++.|+|||||.+++...|.
T Consensus 160 sf~s----l~~vL~e~~rvLkpGG~lv~lvkPq 188 (291)
T 3hp7_A 160 SFIS----LNLILPALAKILVDGGQVVALVKPQ 188 (291)
T ss_dssp SSSC----GGGTHHHHHHHSCTTCEEEEEECGG
T ss_pred eHhh----HHHHHHHHHHHcCcCCEEEEEECcc
Confidence 6443 4789999999999999999985543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.2e-10 Score=115.17 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=83.9
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eE
Q 005981 250 QFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MV 324 (666)
Q Consensus 250 ~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~ 324 (666)
.|..........+.+.+. ++.+|||+|||+|.++..++.. +|+|+|+++.++..++. .+...++.. .+
T Consensus 107 ~f~~~~~~~~~~l~~~~~------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~-n~~~n~~~~~v~~ 179 (278)
T 2frn_A 107 MFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVEDRMSA 179 (278)
T ss_dssp CCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTCTTTEEE
T ss_pred eEcCCcHHHHHHHHHhCC------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEE
Confidence 344444444455555543 3479999999999999888764 59999999999988774 444556543 35
Q ss_pred EeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 325 ~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...|+..++. +++||+|++... .....++.++.++|||||.+++.+.
T Consensus 180 ~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 180 YNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp ECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred EECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 5566777665 689999997533 3446789999999999999999864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-10 Score=112.81 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=88.5
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhcc----ccccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erG----lig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
.+|||+|||.|.++.+|+++ ++ +|+.+| ++.+++.+.++. -+.+.+.-.+.++.-+.+||+|++.+++.
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKYGA-----HTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGG
T ss_pred CEEEEECCCCCHHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHH
Confidence 46999999999999999997 66 566666 367888888874 24445444444432248999999999998
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------------------hHHHHHHHHHHhcCcEEEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------------~~~~~~~~i~~~l~W~~~~ 643 (666)
+... -+...+|.|+.|+|||||++++.+.. -..+.+.++++...++...
T Consensus 132 ~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 132 ALSL-ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred hcCh-HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 8732 24579999999999999999998521 1246677888888887654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.3e-10 Score=117.92 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=83.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~ 331 (666)
.|.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++ ++..++ +..+..++. ..+...+.+.
T Consensus 37 ~y~~~i~~~l~~----~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~l~~~v~~~~~d~~~ 110 (348)
T 2y1w_A 37 TYQRAILQNHTD----FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEE 110 (348)
T ss_dssp HHHHHHHHTGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhcccc----CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHH-HHHHHcCCCCcEEEEEcchhh
Confidence 466666666643 34579999999999999888765 899999996 776554 344445542 3455556777
Q ss_pred CCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
++++ ++||+|++..+.+|+.. +....+.++.++|||||.+++.
T Consensus 111 ~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 111 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 7765 68999999877777753 3457888999999999999865
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=111.05 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=77.8
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
...+.+.+.+.. .+..+|||||||+|.++..+++. +|+++|+++.++..++.... ..+ ...+...+......
T Consensus 57 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~-~v~~~~~d~~~~~~ 130 (231)
T 1vbf_A 57 NLGIFMLDELDL----HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS-YYN-NIKLILGDGTLGYE 130 (231)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT-TCS-SEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCC----CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHh-hcC-CeEEEECCcccccc
Confidence 445566665542 34579999999999999888765 89999999998877654332 223 33444455554222
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++||+|++..+++|+. .++.++|||||.+++...
T Consensus 131 ~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred cCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEc
Confidence 467899999988877663 478999999999999964
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-10 Score=117.19 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
...+|||||||+|.++..++++ +++++|+ +.++..++.... +.++. ..+...|.. .+++. +||+|++.++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFL-DTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhh-hcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 3579999999999999888753 7999999 888877764433 34432 344455554 35554 8999999999
Q ss_pred ccccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++| ++. ..+|++++++|||||++++.+.
T Consensus 245 lh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 245 LHDW-DDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGGS-CHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccC-CHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 8888 443 6899999999999999999875
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-10 Score=119.20 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=76.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
.+|||+|||+|.++.+|++.+. .|+.+|. +.+++.+.++ |+ +.+++..++....-..+||+|.++..|.
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~-----~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGA-----EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTC-----EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CEEEEEeeeCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 4699999999999999999976 5555553 4566555443 43 4555555444432237999999998887
Q ss_pred cCCC--CCCHHHHHHHhhhcccCCeEEEEEeCh--hHHHHHHHHHH
Q 005981 594 VESK--RCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGK 635 (666)
Q Consensus 594 ~~~~--~c~~~~~l~E~dRiLRPgG~~ii~d~~--~~~~~~~~i~~ 635 (666)
+... .-....++.++.|+|||||.++|.... .....+++...
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence 6432 223468999999999999999997433 23444555443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-10 Score=110.47 Aligned_cols=141 Identities=18% Similarity=0.092 Sum_probs=99.8
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCC---CceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT 578 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~---~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~ 578 (666)
.+.+++..+ ..|||+|||.|.++.+|++.+ . .|+.+|. +.+++.+.++ |+ +.+...-.+.++.
T Consensus 30 ~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 102 (219)
T 3dh0_A 30 LKEFGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKG-----KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL 102 (219)
T ss_dssp HHHHTCCTT--CEEEESSCTTCTTHHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS
T ss_pred HHHhCCCCC--CEEEEEecCCCHHHHHHHHHhCCCc-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC
Confidence 344454444 369999999999999999874 4 4555663 5667666555 33 4444444444442
Q ss_pred CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-------------hHHHHHHHHHHhcCcEEEEEe
Q 005981 579 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------------DVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-------------~~~~~~~~i~~~l~W~~~~~~ 645 (666)
-+.+||+|.+..++.+..+ ...+|.|+.|+|||||++++.+.. -..+.++.+++...|+.....
T Consensus 103 ~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 103 PDNTVDFIFMAFTFHELSE---PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp CSSCEEEEEEESCGGGCSS---HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCeeEEEeehhhhhcCC---HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 2389999999999988754 479999999999999999998521 126889999999999976543
Q ss_pred ccCCCCCceEEEEEEeC
Q 005981 646 TAEGPHASYRILTADKR 662 (666)
Q Consensus 646 ~~~~~~~~e~~l~~~k~ 662 (666)
.-. ....+++++|+
T Consensus 180 ~~~---~~~~~~~~~k~ 193 (219)
T 3dh0_A 180 EVG---KYCFGVYAMIV 193 (219)
T ss_dssp EET---TTEEEEEEECC
T ss_pred eeC---CceEEEEEEec
Confidence 322 24677788774
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=112.29 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=87.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc--ccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG--LIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG--lig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.|||+|||.|.++..|++.+. +|+.+| ++.+++.+.++. -+.+.+...+.+ ..+.+||+|+|.+++.|..+
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN-----DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS-----CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred cEEEECCCCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence 599999999999999999976 566666 357888887773 234444444444 23589999999999998865
Q ss_pred CCCHHHHHHHhh-hcccCCeEEEEEeChh---------------------------------HHHHHHHHHHhcCcEEEE
Q 005981 598 RCNMSTIMLEMD-RMLRPGGHVYIRDSID---------------------------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 598 ~c~~~~~l~E~d-RiLRPgG~~ii~d~~~---------------------------------~~~~~~~i~~~l~W~~~~ 643 (666)
. ..+|.|+. |+|||||+++|.+... ..+.++++++...+++..
T Consensus 119 ~---~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 119 P---VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp H---HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred H---HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 3 79999999 9999999999985211 245778888888888654
Q ss_pred E
Q 005981 644 R 644 (666)
Q Consensus 644 ~ 644 (666)
.
T Consensus 196 ~ 196 (250)
T 2p7i_A 196 R 196 (250)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-10 Score=105.21 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=69.9
Q ss_pred CCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
..+|||+|||+|.++..+++. +|+|+|+++.++.. .....+...|+.. ++++++||+|+|+..+++. .
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~-~ 92 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPD-T 92 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTT-C
T ss_pred CCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCCccC-C
Confidence 469999999999999999887 89999999987643 1223345555555 5666899999997764443 3
Q ss_pred Ch---------HHHHHHHHHhccCCeEEEEEEC
Q 005981 354 DD---------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d~---------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. ..++.++.+.| |||.+++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 93 DDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp CCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred ccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 32 47889999999 9999999864
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=116.22 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=81.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~ 331 (666)
.|.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|++ .++..++. .+...+.. ..+...+++.
T Consensus 25 ~y~~ai~~~~~~----~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~-~~~~~~~~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 25 SYRNAIIQNKDL----FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKE-LVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHH----HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHH-HHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhhHhh----cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHH-HHHHcCCCCCEEEEECchhh
Confidence 455555544432 23478999999999999888765 79999999 47776653 44445543 3455567788
Q ss_pred CCCCCCCeeEEEeccccccc--ccChHHHHHHHHHhccCCeEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINW--TRDDGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~--~~d~~~~L~el~RvLkPGG~lv~ 374 (666)
+++++++||+|+|..+..++ ...+..++.++.++|||||.++.
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 88887899999987543332 24567899999999999999974
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.5e-10 Score=112.04 Aligned_cols=103 Identities=11% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCC--CCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP--YPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lp--f~d~sFDlVv~s~ 346 (666)
+..+|||+|||+|.++..++.+ +|+|+|+++.++..++.+. ...++. ..+...|+..++ +++++||+|+|+.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~-~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSV-AYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHH-HHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH-HHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 4579999999999999998876 7999999999988877544 344543 345555666554 5578999999865
Q ss_pred ccccc----c---------------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINW----T---------------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~----~---------------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++.. . .+...++.++.++|||||.+++...
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 43322 0 1234789999999999999999753
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.1e-11 Score=114.14 Aligned_cols=118 Identities=11% Similarity=0.032 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e 330 (666)
...+++.+.+.+... .+..+|||+|||+|.++..+++. +|+|+|+++.++..++.+... .+....+...|+.
T Consensus 14 ~~~~~~~~~~~l~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~d~~ 89 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRM---PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER-FGAVVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHHTTC---CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHH
T ss_pred HHHHHHHHHHHhhhc---CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH-hCCceEEEEcchH
Confidence 345666666666421 34579999999999998888764 899999999998777644332 2322233333444
Q ss_pred CCCCCC-----CCeeEEEecccccccc------cC-------------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPS-----QAFDLIHCSRCRINWT------RD-------------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d-----~sFDlVv~s~~l~h~~------~d-------------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. ++++ ++||+|+|+..+++.. .. ...+++++.++|||||++++...
T Consensus 90 ~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 90 E-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp H-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred h-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3 4444 8999999865433221 00 05778889999999999444433
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=116.14 Aligned_cols=111 Identities=16% Similarity=0.261 Sum_probs=83.0
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL 332 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~L 332 (666)
.+.+.+.+.. ....+|||||||+|.++..++++ +++++|+ +.++..++.+.. +.+.. ..+...|....
T Consensus 179 ~~~l~~~~~~----~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 179 IQLLLEEAKL----DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA-EKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp HHHHHHHCCC----TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH-HTTCTTTEEEEECCTTTS
T ss_pred HHHHHHhcCC----CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH-hcCCCCCEEEEeCccccC
Confidence 3455555541 34579999999999999888754 8999999 989888775444 34443 34555566666
Q ss_pred CCCCCCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++. |+|++..++++|.++ ...+|+++.++|||||.+++.+.
T Consensus 253 ~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 253 SYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 76643 999999998888422 56899999999999999988864
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-11 Score=122.02 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||+|||+|.++..++.. +|+|+|+++.++..++.+ +...++ ...+...|+..++ ++++||+|+++..++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNN-AEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 3479999999999999999876 899999999999887644 444555 3345555666655 568999999887755
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+. .+....+.++.++|+|||.+++.
T Consensus 156 ~~-~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GP-DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SG-GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred Cc-chhhhHHHHHHhhcCCcceeHHH
Confidence 54 55566788899999999996554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=107.03 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=78.0
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHh----ccc-----cccccccCCCCCCCC-CccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYD----RGL-----IGVMHDWCEPFDTYP-RTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~e----rGl-----ig~~~~~ce~~~~yp-~tyDli 586 (666)
..|||+|||+|.++.+|++. +. .|+.+|. +.+++.+.+ .|+ +.++...+ +..++ .+||+|
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~-----~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~--~~~~~~~~fD~I 296 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQA-----KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA--LSGVEPFRFNAV 296 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTC-----EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST--TTTCCTTCEEEE
T ss_pred CeEEEEeCcchHHHHHHHHHCCCC-----EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh--hccCCCCCeeEE
Confidence 56999999999999999988 45 4555553 455555544 343 22233333 22344 799999
Q ss_pred EeccccccCC--CCCCHHHHHHHhhhcccCCeEEEEEeC--hhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 587 HAAGLFSVES--KRCNMSTIMLEMDRMLRPGGHVYIRDS--IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 587 ha~~~f~~~~--~~c~~~~~l~E~dRiLRPgG~~ii~d~--~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
.|+..|.+.. .+-....++.++.|+|||||.++|... ......++++.. ++...... .+.+|+-+..
T Consensus 297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg----~~~~~a~~----~~F~V~~~~~ 367 (375)
T 4dcm_A 297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 367 (375)
T ss_dssp EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS----CCEEEEEC----SSEEEEEEEC
T ss_pred EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC----CEEEEeeC----CCEEEEEEcC
Confidence 9998886532 122234789999999999999999633 334455555544 33333322 2456665544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-10 Score=119.14 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=76.6
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCC--CCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL--PYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~L--pf~d~sFDlVv~s 345 (666)
...+|||||||+|.++..++++ +++++|+ +.++..++.. +.+.++. ..+...|.... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQ-TAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHH-HTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHH-HHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 3479999999999999888753 7999999 8888776643 3333432 34455565554 566 789999999
Q ss_pred ccccccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++++|.++ ...+|++++++|||||.+++.+.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 998888432 24889999999999999999864
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=115.16 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=80.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--C---eEEEeCCcchHHHHHHHHHHHcCCC-ceEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--N---VITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~---V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e 330 (666)
...+.+.+.+.. .++.+|||||||+|.++..+++. . |+++|+++.++..++.. +...++. ..+...|..
T Consensus 62 ~~~~~l~~~l~~----~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~g~~~v~~~~~d~~ 136 (317)
T 1dl5_A 62 SLMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VERLGIENVIFVCGDGY 136 (317)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGG
T ss_pred HHHHHHHHhcCC----CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCeEEEECChh
Confidence 445566666542 34579999999999999888764 4 99999999998877644 3444544 344455666
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+..+++||+|++..++.|+. .++.++|||||.+++...
T Consensus 137 ~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 137 YGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred hccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 5444567899999988877663 578899999999999853
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-10 Score=105.14 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=92.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCC-CccceEEeccccccCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 596 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp-~tyDliha~~~f~~~~ 596 (666)
.+|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++.- +.+.+.- ..++ .+||+|.+..++.+..
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~v~~~~~d----~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFAT-----KLYCIDINVIALKEVKEKFDSVITLSDP----KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTEE-----EEEEECSCHHHHHHHHHHCTTSEEESSG----GGSCTTCEEEEEEESCSTTCS
T ss_pred CeEEEECCCCCHHHHHHHhhcC-----eEEEEeCCHHHHHHHHHhCCCcEEEeCC----CCCCCCceEEEEEccchhccc
Confidence 5699999999999999999842 7778874 678888887721 3333322 2234 8999999999988875
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeChh-------------HHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSID-------------VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-------------~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
+...+|.|+.|+|||||++++.+... ..+.++++++ .|++.....-. .....|++.|+
T Consensus 90 ---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~---~~~~~l~~~~~ 160 (170)
T 3i9f_A 90 ---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT---PYHFGLVLKRK 160 (170)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS---TTEEEEEEEEC
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC---CceEEEEEecC
Confidence 45799999999999999999984321 2567888887 88876544322 24567777764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-10 Score=111.15 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=89.8
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDT 578 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~ 578 (666)
..+.+++..+ .+|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ |+ +.+.+...+.++.
T Consensus 28 l~~~~~~~~~--~~VLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 100 (256)
T 1nkv_A 28 LGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGI-----TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 100 (256)
T ss_dssp HHHHTCCCTT--CEEEEETCTTCHHHHHHHHHTCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHhcCCCCC--CEEEEECCCCCHHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence 3444555544 36999999999999999986 55 4566663 5677666554 54 4555554455544
Q ss_pred CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------------------hHHHHHHHHHHh
Q 005981 579 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKA 636 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------------~~~~~~~~i~~~ 636 (666)
+.+||+|+|.+++.+..+ ...+|.|+.|+|||||++++.+.. .....+..+++.
T Consensus 101 -~~~fD~V~~~~~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (256)
T 1nkv_A 101 -NEKCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDD 176 (256)
T ss_dssp -SSCEEEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHT
T ss_pred -CCCCCEEEECCChHhcCC---HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 789999999988877764 479999999999999999997531 023677888888
Q ss_pred cCcEEE
Q 005981 637 MGWHVT 642 (666)
Q Consensus 637 l~W~~~ 642 (666)
..++..
T Consensus 177 aGf~~~ 182 (256)
T 1nkv_A 177 LGYDVV 182 (256)
T ss_dssp TTBCCC
T ss_pred CCCeeE
Confidence 888753
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=114.42 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
+..+|||||||+|.++..+++. +++++|++ .++..++..... .++. ..+...|....+++++ ||+|++.++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARI-QGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHH-HTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHh-cCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 4479999999999998888754 79999999 888877654443 3433 3445556666666644 999999999
Q ss_pred cccccc-ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~-d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++|.+ +...+|+++.++|+|||++++.+.
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 888832 235899999999999999999865
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=107.98 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=90.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-------cccccccCCCCCCCCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-------IGVMHDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-------ig~~~~~ce~~~~yp~tyDlih 587 (666)
..|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++ |+ +.+...-.+.++.-+.+||+|.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY-----SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 3699999999999999999976 5666663 5677777663 33 3344444444443248999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-----------------------------------------hH
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------------------------------------DV 626 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-----------------------------------------~~ 626 (666)
+..++.+..+.-....+|.++.|+|||||++++.+.. -.
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 9999988876534458999999999999999997431 13
Q ss_pred HHHHHHHHHhcCcEEEEE
Q 005981 627 MDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 627 ~~~~~~i~~~l~W~~~~~ 644 (666)
.+.+++++++-.+++...
T Consensus 187 ~~~l~~ll~~aGf~~~~~ 204 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYF 204 (235)
T ss_dssp HHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 678899999999987644
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.9e-10 Score=107.68 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=92.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc--cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl--ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.|||+|||.|.++.+|++.+. +|+.+| ++.+++.+.++|+ +.+.+.-.+.+ .-+.+||+|.|..++.+..+
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~ 122 (218)
T 3ou2_A 49 DVLELASGTGYWTRHLSGLAD-----RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPD 122 (218)
T ss_dssp EEEEESCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCH
T ss_pred eEEEECCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCH
Confidence 799999999999999999976 566666 3678888888775 44444443444 22489999999999988765
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeCh----------------------------------hHHHHHHHHHHhcCcEEEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------------------DVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------------------------~~~~~~~~i~~~l~W~~~~ 643 (666)
. .+..+|.++.|+|||||.+++.+.. -..+.+.++++.-.+++..
T Consensus 123 ~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 201 (218)
T 3ou2_A 123 D-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSV 201 (218)
T ss_dssp H-HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred H-HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEe
Confidence 2 3468999999999999999998431 1346788999999999776
Q ss_pred Eecc
Q 005981 644 RETA 647 (666)
Q Consensus 644 ~~~~ 647 (666)
....
T Consensus 202 ~~~~ 205 (218)
T 3ou2_A 202 DEVH 205 (218)
T ss_dssp EEEE
T ss_pred eecc
Confidence 6553
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-10 Score=109.77 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=89.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-cccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-GLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-Glig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
..|||+|||.|.++.+|++.|. +|+.+|. +.+++.+.++ ++ .+...-.+.++ .+.+||+|.|..++.+...
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF-----DVDATDGSPELAAEASRRLGR-PVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHTS-CCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred CcEEEECCCCCHHHHHHHHcCC-----eEEEECCCHHHHHHHHHhcCC-ceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 3699999999999999999976 5666663 5788888877 43 23333333444 4599999999999988762
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeCh---------------hHHHHHHHHHHhcC-cEEEEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSI---------------DVMDELQEIGKAMG-WHVTLR 644 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~---------------~~~~~~~~i~~~l~-W~~~~~ 644 (666)
-+...+|.|+.|+|||||++++.... -..+.++.+++.-. |++...
T Consensus 118 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 118 -DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp -HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 24579999999999999999997221 14688999999998 887544
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=116.43 Aligned_cols=99 Identities=24% Similarity=0.336 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
...+|||||||+|.++..+++. +++++|+ +.++..++.+.. ..++. ..+...|... +++. .||+|++..+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 4579999999999998888754 7999999 888887765443 34443 3444455433 3443 4999999999
Q ss_pred ccccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++| .+. ..+|+++.++|||||++++.+.
T Consensus 258 l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNW-SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCC-CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8888 444 3899999999999999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.5e-10 Score=115.88 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCeEEEECCCCch----hHHHhcc--------CCeEEEeCCcchHHHHHHHHH---HH-------------------cC-
Q 005981 275 IRVVMDAGCGVAS----FGAYLLP--------RNVITMSIAPKDVHENQIQFA---LE-------------------RG- 319 (666)
Q Consensus 275 ~~~VLDIGCGtG~----~a~~L~~--------~~V~gvDiS~~~l~~a~~~~a---~~-------------------rg- 319 (666)
..+|||+|||||. ++..|++ .+|+|+|+|+.++..|+...- .. .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3689999999996 5544432 279999999999988764310 00 00
Q ss_pred --------CCceEEeecccCCCCC-CCCeeEEEecccccccccCh--HHHHHHHHHhccCCeEEEEE
Q 005981 320 --------APAMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 320 --------~~~~~~~~d~e~Lpf~-d~sFDlVv~s~~l~h~~~d~--~~~L~el~RvLkPGG~lv~s 375 (666)
....+...++...+++ .+.||+|+|.++++++ ++. ..++.+++++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 0123444455555555 5789999999987777 433 58999999999999999885
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=106.19 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=89.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c---cccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++. . +.+...-.+.++ .+.+||+|.+..+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~ 141 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER-----FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVF 141 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE-----EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESS
T ss_pred CCEEEeCCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChh
Confidence 3799999999999999999875 5667773 57777776653 2 344443333333 2379999999998
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-----------hHHHHHHHHHHhcCcEEEEEe
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------DVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-----------~~~~~~~~i~~~l~W~~~~~~ 645 (666)
|.+.. ..+...+|.++.|+|||||++++.+.. -..+.++++++.-.|++....
T Consensus 142 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 142 FCAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TTTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 88875 235679999999999999999996421 136889999999999986553
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-09 Score=103.94 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=79.4
Q ss_pred CCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----ccccccccCCCCCCCCCccceEEecc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----LIGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----lig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
...-.+|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++. -+.+.+.-.+.++ .+.+||+|.|..
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~ 122 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK-----RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAE 122 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE-----EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEES
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEcc
Confidence 34456799999999999999999853 6777774 67888887763 2455555555555 358999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++.+..+.-.+..+|.++.|+|||||+++|.+
T Consensus 123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99988765555688999999999999999974
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=105.21 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=76.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e 330 (666)
.....+.+.+.. .+..+|||||||+|.++..+++ .+|+++|+++.++..++..... .+.. ..+...+..
T Consensus 64 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~ 138 (215)
T 2yxe_A 64 HMVGMMCELLDL----KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-LGYDNVIVIVGDGT 138 (215)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-HTCTTEEEEESCGG
T ss_pred HHHHHHHHhhCC----CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCeEEEECCcc
Confidence 344555555531 3457999999999988887764 3799999999988877654433 3433 233444442
Q ss_pred CCCCC-CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYP-SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~-d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. +++ +++||+|++..+++++. .++.++|||||.+++...
T Consensus 139 ~-~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 139 L-GYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp G-CCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred c-CCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEEC
Confidence 2 233 57899999988876663 488999999999999864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-09 Score=107.88 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=80.7
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp 333 (666)
..+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.......+.. ..+...|....+
T Consensus 86 ~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~ 161 (258)
T 2pwy_A 86 SAMVTLLDL----APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE 161 (258)
T ss_dssp HHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred HHHHHHcCC----CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence 445554431 34579999999999888877643 89999999999888775544431332 345555677777
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|++. + +++..++.++.++|+|||.+++..+
T Consensus 162 ~~~~~~D~v~~~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 162 LEEAAYDGVALD-----L-MEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCcCEEEEC-----C-cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 778899999963 3 5667899999999999999999874
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=116.72 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEecc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
....+|||||||+|.++..++++ +++++|+ +.++..++.... +.++. ..+...|.. .+++. .||+|++.+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT-GRGLADRCEILPGDFF-ETIPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh-hcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence 34579999999999999888764 7999999 888877765443 34432 344455554 45555 899999999
Q ss_pred cccccccChH--HHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~~--~~L~el~RvLkPGG~lv~st~ 377 (666)
++++| ++.. .+|+++.++|||||++++.+.
T Consensus 277 vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 277 VLHDW-DDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp CGGGS-CHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred hhccC-CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 98888 4444 799999999999999999864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=109.09 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=89.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc---cccccccCCCCCCCCCccceEEeccccccCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
+|||+|||.|.++.+|++.|. +|+.+| ++.+++.+.+++. +.+.+...+.++.-+.+||+|.+.+++.+..
T Consensus 56 ~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 56 EVLDVGCGDGYGTYKLSRTGY-----KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred eEEEEcCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 699999999999999999987 566666 3678888888743 4444444444543248999999999998875
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeCh----------------------hHHHHHHHHHHhcCcEEEEE
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
+ ...+|.++.|+|||||+++|.+.. -....++++++...+++...
T Consensus 131 ~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 131 E---PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp C---HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred C---HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 4 479999999999999999997511 11357899999999997654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-10 Score=113.53 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=88.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccccccCCCC-CCCC-CccceEEeccccccCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPF-DTYP-RTYDLLHAAGLFSVES 596 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~-~~yp-~tyDliha~~~f~~~~ 596 (666)
.+|||+|||.|.++.+|++.|+ +|+.+| ++.+++.+.++ +.+...-.+.+ ..++ .+||+|.|.+++.+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~ 115 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI-----ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD 115 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC-----CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC
T ss_pred CeEEEEeCCCCHHHHHHHhCCC-----cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC
Confidence 4699999999999999999987 456666 36788888887 44443332222 1344 8999999999999886
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeChh-------------------HHHHHHHHHHhcCcEEEEE
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSID-------------------VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-------------------~~~~~~~i~~~l~W~~~~~ 644 (666)
+ -++..+|.++.|+|||||++++..... ..+.++.++++-.+++...
T Consensus 116 ~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 116 P-ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp G-GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred c-HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 3 255799999999999999999974211 1367888888888886543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=109.58 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC----CCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~----Lpf~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..|++. +|+|+|+++.++..++.. +... ....+...|+.. +++. ++||+|++
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~-~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~- 149 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDA-CAER-ENIIPILGDANKPQEYANIV-EKVDVIYE- 149 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHH-TTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEE-
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHH-hhcC-CCeEEEECCCCCcccccccC-ccEEEEEE-
Confidence 4579999999999988887643 799999999988766532 3222 223344456665 6666 78999982
Q ss_pred ccccccccCh---HHHHHHHHHhccCCeEEEEE
Q 005981 346 RCRINWTRDD---GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 346 ~~l~h~~~d~---~~~L~el~RvLkPGG~lv~s 375 (666)
+. .++ ..++.++.++|||||.++++
T Consensus 150 ----~~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 ----DV-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ----CC-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----ec-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 22 344 67799999999999999996
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-09 Score=107.85 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d 328 (666)
.....++.+.+.+. .+..+|||+|||+|.++..++. .+|+++|+++.++..++.+. ...++. ..+...|
T Consensus 94 ~te~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~v~~~~~d 167 (276)
T 2b3t_A 94 DTECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA-QHLAIKNIHILQSD 167 (276)
T ss_dssp THHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHH-HHHTCCSEEEECCS
T ss_pred hHHHHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEEcc
Confidence 34556667766664 2346899999999999888873 38999999999998877543 334543 3344444
Q ss_pred ccCCCCCCCCeeEEEeccccccc------------c------------cChHHHHHHHHHhccCCeEEEEEE
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINW------------T------------RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~------------~------------~d~~~~L~el~RvLkPGG~lv~st 376 (666)
... ++++++||+|+++...+.. . .....++.++.++|||||++++..
T Consensus 168 ~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 168 WFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp TTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 433 2346789999987432221 0 123578899999999999999974
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=112.86 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=75.5
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-CCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+|||||||+|.++..++++ +++++|+ +.++..++....... .....+...|... +++ ++||+|++..++++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD 245 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence 79999999999998888753 7999999 989887765443321 1123444455544 555 67999999999888
Q ss_pred cccChH--HHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~--~~L~el~RvLkPGG~lv~st~ 377 (666)
| .+.. .+|+++.++|||||++++.+.
T Consensus 246 ~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 246 L-DEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp C-CHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred C-CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8 4444 899999999999999999864
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.7e-10 Score=113.33 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=89.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCC-CCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTY-PRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~y-p~tyDliha~~ 590 (666)
..|||+|||.|.++.+|++.|. +|+.+|. +.+++.+.++ |+ +.+.+...+.++.+ +.+||+|.|.+
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 144 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH-----QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA 144 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES
T ss_pred CEEEEeCCcchHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc
Confidence 4699999999999999999987 5666663 5777777665 44 44555555555534 48999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------------------------HHHHHHHHHHh
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------------------------VMDELQEIGKA 636 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------------------------~~~~~~~i~~~ 636 (666)
++.+..+ ...+|.|+.|+|||||+++|.+... ..+.++.+++.
T Consensus 145 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 221 (285)
T 4htf_A 145 VLEWVAD---PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEE 221 (285)
T ss_dssp CGGGCSC---HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHH
T ss_pred hhhcccC---HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHH
Confidence 9988764 4799999999999999999975311 13578888888
Q ss_pred cCcEEEEE
Q 005981 637 MGWHVTLR 644 (666)
Q Consensus 637 l~W~~~~~ 644 (666)
-.+++...
T Consensus 222 aGf~v~~~ 229 (285)
T 4htf_A 222 AGWQIMGK 229 (285)
T ss_dssp TTCEEEEE
T ss_pred CCCceeee
Confidence 88887643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=111.33 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=76.2
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhh-CCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIE-QKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTY 579 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~-~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~y 579 (666)
.+.+++..+ ..|||+|||.|+++.+|++ .|+ +|+.+|. +.+++.+.++ |+ +.+.+...+. +
T Consensus 57 ~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~-----~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~ 126 (287)
T 1kpg_A 57 LGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDV-----NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ---F 126 (287)
T ss_dssp HTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG---C
T ss_pred HHHcCCCCc--CEEEEECCcccHHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh---C
Confidence 344444444 3699999999999999994 465 5666663 5777777665 43 4444433333 4
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|.+||+|++.++|.|... .+...+|.|+.|+|||||.+++.+
T Consensus 127 ~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 127 DEPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp CCCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 589999999999998853 356899999999999999999974
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=109.72 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC---CCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~---Lpf~d~sFDlVv~s 345 (666)
...+|||+|||+|.++..|++ .+|+|+|+++.++..+. +.++.+ ....+...|+.. +++.+++||+|++.
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~-~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI-NLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH-HHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 457999999999999888865 37999999998776554 455544 233344455554 45557899999975
Q ss_pred ccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. ..+. ..++.++.++|||||.++++..
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 43 1222 4568889999999999999753
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=105.40 Aligned_cols=138 Identities=15% Similarity=0.237 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----c-------cccc
Q 005981 501 WNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----G-------LIGV 568 (666)
Q Consensus 501 w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----G-------lig~ 568 (666)
..++++...+.+....+ ..|||+|||.|.++.+|++++-. .+|+.+| ++.+++.+.++ | -+.+
T Consensus 14 ~~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (217)
T 3jwh_A 14 NQQRMNGVVAALKQSNA--RRVIDLGCGQGNLLKILLKDSFF---EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88 (217)
T ss_dssp HHHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHHCTTC---SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEE
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHhhCCC---CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEE
Confidence 33444433344443333 47999999999999999987411 1566666 35778777765 2 1334
Q ss_pred ccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhH----------------------
Q 005981 569 MHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV---------------------- 626 (666)
Q Consensus 569 ~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~---------------------- 626 (666)
+....+..+.-+.+||+|.|..++.+..+ -.+..+|.++.|+|||||.+++.+..+.
T Consensus 89 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (217)
T 3jwh_A 89 IQGALTYQDKRFHGYDAATVIEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWT 167 (217)
T ss_dssp EECCTTSCCGGGCSCSEEEEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBC
T ss_pred EeCCcccccccCCCcCEEeeHHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccC
Confidence 43332222222279999999999988753 2456899999999999999988765431
Q ss_pred HHHHH----HHHHhcCcEEEEE
Q 005981 627 MDELQ----EIGKAMGWHVTLR 644 (666)
Q Consensus 627 ~~~~~----~i~~~l~W~~~~~ 644 (666)
.+.++ +++++-.+++...
T Consensus 168 ~~~l~~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 168 RSQFQNWANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHHHHHHHcCceEEEE
Confidence 23344 8889999988776
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=112.32 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHc-CCC-ceEEeecccCCCCCCCCeeEEEec
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-GAP-AMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~r-g~~-~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
.+..+|||+|||+|.++..+++ .+|+++|+++.++..++.+. ... +.. ..+...|+.. ++++++||+|++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~- 185 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FISDQMYDAVIA- 185 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCCSCCEEEEEE-
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCcCCCccEEEE-
Confidence 3557999999999998887764 28999999999887776443 333 433 3444455555 566789999996
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. +++..++.++.++|||||.+++++.
T Consensus 186 ----~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 186 ----DI-PDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp ----CC-SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ----cC-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 33 5677899999999999999999975
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=104.62 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=89.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCCC-CCccceEEec-cc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTY-PRTYDLLHAA-GL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~y-p~tyDliha~-~~ 591 (666)
.|||+|||.|.++.+|++++. .|+.+| ++.+++.+.++ |+ +.+.++..+.+..+ +.+||+|.++ +.
T Consensus 25 ~vLDiGcG~G~~~~~la~~~~-----~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 25 IVVDATMGNGNDTAFLAGLSK-----KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp EEEESCCTTSHHHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred EEEEEcCCCCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 599999999999999999876 566666 35677766554 54 55566665554434 4889999876 22
Q ss_pred cccCC-----CCCCHHHHHHHhhhcccCCeEEEEEeC------hhHHHHHHHHHHhcC---cEEEEEeccCCCCCceEEE
Q 005981 592 FSVES-----KRCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMG---WHVTLRETAEGPHASYRIL 657 (666)
Q Consensus 592 f~~~~-----~~c~~~~~l~E~dRiLRPgG~~ii~d~------~~~~~~~~~i~~~l~---W~~~~~~~~~~~~~~e~~l 657 (666)
+.... ..-....+|.|+.|+|||||.+++... .+..+.+.+.++.+. |.+.....-+....+..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence 22110 111224788999999999999999742 334566777777665 7776554433333455666
Q ss_pred EEEe
Q 005981 658 TADK 661 (666)
Q Consensus 658 ~~~k 661 (666)
+..|
T Consensus 180 ~i~~ 183 (185)
T 3mti_A 180 MLEK 183 (185)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6655
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=115.44 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCC-CCCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lp-f~d~sFDlVv~s~~ 347 (666)
..+|||||||+|.++..++++ +++++|+ +.++..++... ...+.. ..+...|....+ +..+.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTI-HAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHH-HHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHH-HhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 679999999999999888754 8999999 77887776433 334443 334455555554 13467999999999
Q ss_pred ccccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++| ++. ..+|+++.++|||||.+++.+.
T Consensus 258 lh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 258 LHYF-DAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp GGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccC-CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8888 443 6899999999999999999864
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.96 E-value=8.6e-10 Score=111.56 Aligned_cols=117 Identities=17% Similarity=0.118 Sum_probs=77.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHHHc--CCC-------
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALER--GAP------- 321 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~~r--g~~------- 321 (666)
.+++.+.+.+. .....+|||+|||+|.++..++.. +|+|+|+++.++..++....... ++.
T Consensus 38 ~l~~~~l~~~~----~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~ 113 (250)
T 1o9g_A 38 EIFQRALARLP----GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR 113 (250)
T ss_dssp HHHHHHHHTSS----CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc----cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhh
Confidence 44555554443 124568999999999988877642 79999999999987764332210 110
Q ss_pred --------------------ce-------------EEeecccCCCC-----CCCCeeEEEeccccccccc--------Ch
Q 005981 322 --------------------AM-------------VAAFATRRLPY-----PSQAFDLIHCSRCRINWTR--------DD 355 (666)
Q Consensus 322 --------------------~~-------------~~~~d~e~Lpf-----~d~sFDlVv~s~~l~h~~~--------d~ 355 (666)
.. +...|...... ..++||+|+|+..+++... ..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~ 193 (250)
T 1o9g_A 114 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV 193 (250)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred hhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHH
Confidence 11 44445443211 3458999999866554421 12
Q ss_pred HHHHHHHHHhccCCeEEEEEEC
Q 005981 356 GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 356 ~~~L~el~RvLkPGG~lv~st~ 377 (666)
..++.++.++|+|||+++++..
T Consensus 194 ~~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 194 AGLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHHhcCCCcEEEEeCc
Confidence 4889999999999999999643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=109.66 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-------CCC-ceEEeecccC-CC--CCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-------GAP-AMVAAFATRR-LP--YPSQA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-------g~~-~~~~~~d~e~-Lp--f~d~s 338 (666)
...+|||||||+|.++..++.. +|+|+|+++.++..++.+....+ ++. ..+...|+.. ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 3468999999999999888753 79999999999887765444321 433 3444455554 55 67889
Q ss_pred eeEEEecccccccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 339 FDLIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 339 FDlVv~s~~l~h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|.|+.... -.|... ...++.++.++|+|||.|++.+.
T Consensus 129 ~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 129 LSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 999984321 122100 04799999999999999999763
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.6e-10 Score=112.05 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=91.5
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----ccccccccCCCCCCCCCccceEEeccccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG----lig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
-.+|||+|||.|.++.+|++.+. .+|+.+| ++.+++.+.++. -+.+.+...+.++.-+.+||+|+|..++.
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKLY----ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHC----SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCcCHHHHHHHHhhc----CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence 45799999999999999998842 2466666 367888887763 24444444444443238999999999988
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------------hHHHHHHHHHHhcCcEEEEEec
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
+..+ -+...+|.++.|+|||||+++|.+.. ...+.+++++++-.+++.....
T Consensus 170 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 170 YLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 8753 23579999999999999999998631 1257889999999998765543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=109.08 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=81.4
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcC--C-CceEEeeccc
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERG--A-PAMVAAFATR 330 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg--~-~~~~~~~d~e 330 (666)
+..+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.+.....+ . ...+...|+.
T Consensus 88 ~~~i~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~ 163 (280)
T 1i9g_A 88 AAQIVHEGDI----FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280)
T ss_dssp HHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHHHHHcCC----CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence 4455555531 34579999999999988887652 899999999998887765544312 2 2345555677
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++++||+|++. . .++..++.++.++|+|||.+++.++
T Consensus 164 ~~~~~~~~~D~v~~~-----~-~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 164 DSELPDGSVDRAVLD-----M-LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GCCCCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred hcCCCCCceeEEEEC-----C-cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 777778899999963 2 4666899999999999999999874
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-09 Score=101.40 Aligned_cols=137 Identities=13% Similarity=0.110 Sum_probs=96.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEec-cccccCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAA-GLFSVES 596 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~-~~f~~~~ 596 (666)
.+|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++.- +.+.+...+.++.-+.+||+|.+. .++.+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH-----DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CeEEEECCCCCHHHHHHHHCCC-----cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 3699999999999999999976 5666663 567777766632 444444433333223899999998 5666653
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeChh---HHHHHHHHHHhcCcEEEEEeccC-----CCCCceEEEEEEeC
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSID---VMDELQEIGKAMGWHVTLRETAE-----GPHASYRILTADKR 662 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~~~---~~~~~~~i~~~l~W~~~~~~~~~-----~~~~~e~~l~~~k~ 662 (666)
. -....+|.++.|+|||||.+++..... ....+.++++...+++....... ....+.-+++++|+
T Consensus 123 ~-~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 123 E-DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred h-HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 2 234689999999999999999975433 47888899999999987653321 11345667777774
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.9e-09 Score=105.79 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=78.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~ 331 (666)
+..+.+.+.. .++.+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..++. ..+...|+..
T Consensus 82 ~~~i~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 82 AALIVAYAGI----SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HHTCTTTEEEECSCGGG
T ss_pred HHHHHHhhCC----CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH-HcCCCCceEEEECchhh
Confidence 3445555431 34579999999999988877643 89999999999888775443 34544 3444455543
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. +++++||+|++. . +++..++.++.++|+|||.+++..+
T Consensus 157 ~-~~~~~~D~v~~~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 157 G-IEEENVDHVILD-----L-PQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp C-CCCCSEEEEEEC-----S-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred c-cCCCCcCEEEEC-----C-CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 3 677889999963 2 5667899999999999999999864
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=99.57 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=85.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
.+|||+|||.|.++.+|. ..|..+.+.+. -+.+.....+.++.-+.+||+|.|..++. . -
T Consensus 69 ~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~-------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~---~ 128 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR---NPVHCFDLASL-------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G---T 128 (215)
T ss_dssp SCEEEETCTTCHHHHHCC---SCEEEEESSCS-------------STTEEESCTTSCSCCTTCEEEEEEESCCC-S---S
T ss_pred CeEEEECCcCCHHHHHhh---ccEEEEeCCCC-------------CceEEEeccccCCCCCCCEeEEEEehhcc-c---c
Confidence 469999999999999984 23333333322 12233333333332238999999998884 2 3
Q ss_pred CHHHHHHHhhhcccCCeEEEEEeChh---HHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 600 NMSTIMLEMDRMLRPGGHVYIRDSID---VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii~d~~~---~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
+...+|.|+.|+|||||+++|.+... ..+.+..+++...+++...+...+ ...+++++|.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCC---eEEEEEEEec
Confidence 56899999999999999999997655 468899999999999876654332 4578888884
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=108.12 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC---ceEEe
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP---AMVAA 326 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~ 326 (666)
...++..+..... ..+..+|||||||+|..+..|+. .+|+++|+++.++..++..+ ...++. ..+..
T Consensus 41 ~~~~l~~l~~~~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~~i~~~~ 115 (221)
T 3dr5_A 41 TGQLLTTLAATTN----GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF-REAGYSPSRVRFLL 115 (221)
T ss_dssp HHHHHHHHHHHSC----CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH-HHTTCCGGGEEEEC
T ss_pred HHHHHHHHHHhhC----CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcCcEEEEE
Confidence 3344555554433 12234899999999988887765 28999999999998887544 445554 23344
Q ss_pred ecccC-CC-CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 327 FATRR-LP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 327 ~d~e~-Lp-f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.++.+ ++ +++++||+|++... ..+...++.++.++|||||++++..
T Consensus 116 gda~~~l~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 116 SRPLDVMSRLANDSYQLVFGQVS----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp SCHHHHGGGSCTTCEEEEEECCC----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cCHHHHHHHhcCCCcCeEEEcCc----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 44322 32 33689999997532 2445679999999999999999863
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-09 Score=101.63 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCchhHHHhcc------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--------------
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-------------- 333 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp-------------- 333 (666)
+..+|||+|||+|.++..+++ .+|+|+|+++... .....+...|+..++
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTSSCCC----------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchhhhhhcccccccccc
Confidence 347899999999999888764 2699999998321 012234445555555
Q ss_pred -----------CCCCCeeEEEeccccccccc----Ch-------HHHHHHHHHhccCCeEEEEEEC
Q 005981 334 -----------YPSQAFDLIHCSRCRINWTR----DD-------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 -----------f~d~sFDlVv~s~~l~h~~~----d~-------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|+|..+ .|+.. +. ..+++++.++|||||.|++...
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhHHHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 56679999998765 44421 11 1378899999999999999754
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-10 Score=114.75 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEE-eec-----ccCCCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA-AFA-----TRRLPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d-----~e~Lpf~d~sFDlVv~ 344 (666)
...+|||||||+|.++..|++. +|+|+|+++.|+..+.. +....... ..+ ...++ ...||.+.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~ 109 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIR-----SDERVVVMEQFNFRNAVLADFE--QGRPSFTSI 109 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHH-----TCTTEEEECSCCGGGCCGGGCC--SCCCSEEEE
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHH-----hCccccccccceEEEeCHhHcC--cCCCCEEEE
Confidence 4579999999999999888865 79999999999865432 21111100 001 11221 112344443
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..++.++ ..+|.++.|+|||||.+++..
T Consensus 110 D~v~~~l----~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 110 DVSFISL----DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CCSSSCG----GGTHHHHHHHSCTTCEEEEEE
T ss_pred EEEhhhH----HHHHHHHHHhccCCCEEEEEE
Confidence 3332222 779999999999999999974
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=108.52 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CCC-C----CCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPY-P----SQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lpf-~----d~sFDl 341 (666)
..+|||||||+|..+..++.. +|+++|+++.++..++.+.. ..++. ..+...|+.. ++. . .++||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 478999999999999888763 89999999999988775444 34443 2344444322 332 1 278999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|++.....++ .+...++.++ ++|||||.+++...
T Consensus 138 V~~d~~~~~~-~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 138 VFLDHWKDRY-LPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEECSCGGGH-HHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEcCCcccc-hHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9987654554 3444667777 99999999998754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=110.02 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=77.0
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCCCC-
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP- 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~yp- 580 (666)
.+.++... -.+|||+|||.|.++..|++++. .|+.+| ++.+++.+.++ |+ +.+.....+.++ +|
T Consensus 30 ~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~ 101 (260)
T 1vl5_A 30 MQIAALKG--NEEVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTD 101 (260)
T ss_dssp HHHHTCCS--CCEEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCT
T ss_pred HHHhCCCC--CCEEEEEeCCCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC-CCC
Confidence 34444443 34699999999999999999864 666677 35777777664 44 444444445444 44
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+||+|+|..++.+..+ ...+|.|+.|+|||||++++.+
T Consensus 102 ~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp TCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEEEhhhhHhcCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 89999999988888764 4799999999999999999974
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.7e-09 Score=102.61 Aligned_cols=112 Identities=17% Similarity=0.206 Sum_probs=84.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~ 598 (666)
.+|||+|||.|.++..|++. +.+| ++.+++.+.++++ .+.....+.++.-+.+||+|.+..++.+..+
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~---------~~vD~s~~~~~~a~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~- 117 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK---------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVDD- 117 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC---------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSSC-
T ss_pred CcEEEeCCCCCHHHHHHHHH---------hccCCCHHHHHHHHhcCC-EEEEcccccCCCCCCCeeEEEEcchHhhccC-
Confidence 36999999999999999875 3344 3578888888854 3333333444422379999999998887753
Q ss_pred CCHHHHHHHhhhcccCCeEEEEEeCh------------------------hHHHHHHHHHHhcCcEEEEE
Q 005981 599 CNMSTIMLEMDRMLRPGGHVYIRDSI------------------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 599 c~~~~~l~E~dRiLRPgG~~ii~d~~------------------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
...+|.++.|+|||||++++.+.. -..+.+++++++..+++...
T Consensus 118 --~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 118 --PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred --HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999997421 13578889999999987544
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.6e-10 Score=119.94 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=103.3
Q ss_pred hhhhhhHhHHHHHHHHHHh----cccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccc
Q 005981 493 LFKAESKYWNEIIESYVRA----LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIG 567 (666)
Q Consensus 493 ~f~~d~~~w~~~v~~Y~~~----l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig 567 (666)
.+...+..|.++...+.+. +++..+ ..|||+|||.|.++.+|+++|. +|+.+| ++++++.+.++|+-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~VLDiGcG~G~~~~~l~~~g~-----~v~gvD~s~~~~~~a~~~~~~~ 152 (416)
T 4e2x_A 80 YHSSGSSVMREHFAMLARDFLATELTGPD--PFIVEIGCNDGIMLRTIQEAGV-----RHLGFEPSSGVAAKAREKGIRV 152 (416)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHTTTCSSS--CEEEEETCTTTTTHHHHHHTTC-----EEEEECCCHHHHHHHHTTTCCE
T ss_pred CcCcCCHHHHHHHHHHHHHHHHHhCCCCC--CEEEEecCCCCHHHHHHHHcCC-----cEEEECCCHHHHHHHHHcCCCc
Confidence 3445556677776666543 233333 4699999999999999999976 677777 468999999997622
Q ss_pred cc----cccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------h-------
Q 005981 568 VM----HDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------D------- 625 (666)
Q Consensus 568 ~~----~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------~------- 625 (666)
.. .+..+.++ ++ .+||+|.+.++|.|.. +...+|.|+.|+|||||+++|.... .
T Consensus 153 ~~~~~~~~~~~~l~-~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 228 (416)
T 4e2x_A 153 RTDFFEKATADDVR-RTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHF 228 (416)
T ss_dssp ECSCCSHHHHHHHH-HHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCC
T ss_pred ceeeechhhHhhcc-cCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhh
Confidence 11 11111112 23 8999999999999986 4589999999999999999997431 0
Q ss_pred ---HHHHHHHHHHhcCcEEEEEe
Q 005981 626 ---VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 626 ---~~~~~~~i~~~l~W~~~~~~ 645 (666)
..+.++.++++-.+++....
T Consensus 229 ~~~s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 229 FLFSATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp EECCHHHHHHHHHHTTEEEEEEE
T ss_pred hcCCHHHHHHHHHHcCCEEEEEE
Confidence 14689999999999876544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-09 Score=103.64 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCC------CceEEeecccCCCCCCCCeeEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA------PAMVAAFATRRLPYPSQAFDLI 342 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~------~~~~~~~d~e~Lpf~d~sFDlV 342 (666)
+..+|||||||+|.++..+++ .+|+++|+++.++..++..... .+. ...+...|....+..+++||+|
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-hcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 457999999999998887764 2799999999998877654433 221 2334445555555456789999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++...+.++ +.++.++|||||.++++..
T Consensus 156 ~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 156 HVGAAAPVV-------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EECSBBSSC-------CHHHHHTEEEEEEEEEEES
T ss_pred EECCchHHH-------HHHHHHhcCCCcEEEEEEe
Confidence 988765544 3688999999999999864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-10 Score=126.47 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecccCC--CCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRL--PYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~e~L--pf~d~sFDlVv~s~~l 348 (666)
++.+|||||||+|.++..|+.. +|+|+|+++.++..|+. .|.+.+ +...+...+++++ .+.+++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA-LAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH-HHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 4568999999999999999977 99999999999988864 555555 4455666667776 4667899999999999
Q ss_pred cccccChH--HHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~~--~~L~el~RvLkPGG~lv~st~ 377 (666)
+|. .++. ..+..+.+.|+++|..++.+.
T Consensus 145 ehv-~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 145 HHI-VHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp HHH-HHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred hcC-CCHHHHHHHHHHHHHhccccceeeEEe
Confidence 998 5554 445667888888887766653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-09 Score=112.40 Aligned_cols=99 Identities=23% Similarity=0.341 Sum_probs=74.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
+..+|||||||+|.++..+++. +++++|+ +.++..++.+.. ..++. ..+...|..+ +++. .||+|++..+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK-DEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 4579999999999998888754 7889999 888877765443 34443 3444445433 3443 4999999999
Q ss_pred ccccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++| ++. ..+++++.++|||||.+++.+.
T Consensus 259 l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 259 LLNW-PDHDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp GGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccCC-CHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 8888 444 4899999999999999999875
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=109.27 Aligned_cols=104 Identities=26% Similarity=0.330 Sum_probs=77.0
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDT 578 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~ 578 (666)
..+.+++..+ .+|||+|||.|.++.+|+++ ++ +|+.+|. +.+++.+.++ |+ +.+.+...+.++
T Consensus 53 l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 124 (273)
T 3bus_A 53 MIALLDVRSG--DRVLDVGCGIGKPAVRLATARDV-----RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP- 124 (273)
T ss_dssp HHHHSCCCTT--CEEEEESCTTSHHHHHHHHHSCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-
T ss_pred HHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-
Confidence 3445555444 46999999999999999885 65 5566663 5667666554 54 444444444444
Q ss_pred CC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 579 YP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 579 yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++ .+||+|++.++|.+..+. ..+|.|+.|+|||||+++|.+
T Consensus 125 ~~~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 125 FEDASFDAVWALESLHHMPDR---GRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp SCTTCEEEEEEESCTTTSSCH---HHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCCccEEEEechhhhCCCH---HHHHHHHHHHcCCCeEEEEEE
Confidence 44 899999999999887654 799999999999999999975
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.91 E-value=9.8e-09 Score=109.38 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-cCC---CceEEeecccCC-C-CCCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RGA---PAMVAAFATRRL-P-YPSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-rg~---~~~~~~~d~e~L-p-f~d~sFDlVv 343 (666)
...+|||||||+|.++..+++. +|+++|+++.++..++..+... .++ ...+...|.... + +++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4579999999999999999865 7999999999998877554431 121 234444453332 2 3457899999
Q ss_pred ecccccccc--cC--hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 344 CSRCRINWT--RD--DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 344 ~s~~l~h~~--~d--~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
+... .++. .+ ...+++++.++|+|||.+++.....+.........+
T Consensus 200 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 249 (334)
T 1xj5_A 200 VDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIV 249 (334)
T ss_dssp ECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHH
T ss_pred ECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHH
Confidence 7543 2221 11 258999999999999999997433344433333333
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=110.40 Aligned_cols=94 Identities=11% Similarity=0.161 Sum_probs=74.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc-ccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-LIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG-lig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||.|.++.+|++.+. +|+.+| ++.+++.+.++. -+.+.....+.++ ++.+||+|++..++.+..+
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d 132 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGA-----EVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLHWVKE 132 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGGGCSC
T ss_pred CEEEEecCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhhhCcC
Confidence 4699999999999999999876 566666 367888887763 1444444445554 4789999999998887654
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
...+|.|+.|+|||||++++..
T Consensus 133 ---~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 133 ---PEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHhcCCCcEEEEEe
Confidence 5799999999999999999973
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=110.65 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=84.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
..|||+|||.|.++.+|+++|. +|+.+|. +.+++.+.++ |+ +.+...-.+.++. +.+||+|.|..+|.
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY-----DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGG
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchh
Confidence 4599999999999999999987 5666663 5666655544 54 4444444334443 68999999999998
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeCh--------------hHHHHHHHHHHhcCcEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------DVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~--------------~~~~~~~~i~~~l~W~~~~~~ 645 (666)
+... -.+..+|.++.|+|||||+++|.... -..+.+++++.. |++....
T Consensus 196 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 196 FLNR-ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 7753 35679999999999999998775211 114567777776 8876553
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-09 Score=108.17 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=78.7
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeC-CcchHHHHHHHHH----HHcCCC----
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSI-APKDVHENQIQFA----LERGAP---- 321 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDi-S~~~l~~a~~~~a----~~rg~~---- 321 (666)
+.....+.+.+.... ..+.+|||||||+|.++..++.. +|+++|+ ++.++..++.+.. ...++.
T Consensus 63 ~~~~l~~~l~~~~~~----~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~ 138 (281)
T 3bzb_A 63 GARALADTLCWQPEL----IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKR 138 (281)
T ss_dssp HHHHHHHHHHHCGGG----TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHhcchh----cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 444555555554431 23479999999999988887754 7999999 8988887765442 222321
Q ss_pred --ceEEeecccC----CC--CCCCCeeEEEecccccccccChHHHHHHHHHhcc---C--CeEEEEEE
Q 005981 322 --AMVAAFATRR----LP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLR---A--GGYFAWAA 376 (666)
Q Consensus 322 --~~~~~~d~e~----Lp--f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLk---P--GG~lv~st 376 (666)
..+...+... +. +++++||+|+++.++++. .+...+++++.++|+ | ||.+++..
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~-~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH-QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG-GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccCh-HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 2222222111 11 035789999998886665 778899999999999 9 99877764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-09 Score=105.89 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=76.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc---CCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL 332 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L 332 (666)
.....+.+.+.. .+..+|||||||+|.++..+++ .+|+++|+++.++..++.... ..++.. .+...+. ..
T Consensus 78 ~~~~~~~~~l~~----~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~ 151 (235)
T 1jg1_A 78 HMVAIMLEIANL----KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDG-SK 151 (235)
T ss_dssp HHHHHHHHHHTC----CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG-GG
T ss_pred HHHHHHHHhcCC----CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECCc-cc
Confidence 344555555531 3457899999999999888876 489999999998877765443 344433 3344443 34
Q ss_pred CCCCC-CeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQ-AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~-sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++ .||+|++...+.++. .++.++|||||.++++..
T Consensus 152 ~~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 152 GFPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEe
Confidence 45544 499999887766552 378999999999999864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-09 Score=111.27 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=85.4
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
..|||+|||.|.++..|++. |+ +|+.+|. +.+++.+.++ |+ +.+.+...+.++.-+.+||+|++.+
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKFGV-----SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 46999999999999999987 76 5666663 5677766654 44 4555555455442238999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-------h---------------HHHHHHHHHHhcCcEEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------D---------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-------~---------------~~~~~~~i~~~l~W~~~~ 643 (666)
++.|..+ ...+|.|+.|+|||||++++.+.. . ....+.++++.-.+++..
T Consensus 159 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 230 (297)
T 2o57_A 159 AFLHSPD---KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLR 230 (297)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEE
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEE
Confidence 9998876 589999999999999999998521 0 234566677777777543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=117.56 Aligned_cols=115 Identities=11% Similarity=0.006 Sum_probs=78.2
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHH--HH----HHHHHcC--CCc-
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHEN--QI----QFALERG--APA- 322 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a--~~----~~a~~rg--~~~- 322 (666)
...+..+++.+.. ..+.+|||||||+|.++..++.. +|+|+|+++.++..| |. +.+...| ...
T Consensus 228 p~~v~~ml~~l~l----~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV 303 (433)
T 1u2z_A 228 PNFLSDVYQQCQL----KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 303 (433)
T ss_dssp HHHHHHHHHHTTC----CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence 3445566665541 35579999999999999888763 699999999988766 22 2233345 222
Q ss_pred eEEeec-ccC-CCC--CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 323 MVAAFA-TRR-LPY--PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 323 ~~~~~d-~e~-Lpf--~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+...+ ... .++ ..++||+|+++.++ +.++...+|.++.++|||||.+++..
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred EEEEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 233322 211 112 24789999987654 33667788999999999999998874
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-09 Score=118.77 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=75.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCC------CchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCceEE
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCG------VASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVA 325 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCG------tG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~ 325 (666)
.+.+++++.+. .+..+||||||| +|..+..+.. .+|+|+|+++.|. .......+.
T Consensus 204 ~~Ye~lL~~l~-----~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv 269 (419)
T 3sso_A 204 PHYDRHFRDYR-----NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTI 269 (419)
T ss_dssp HHHHHHHGGGT-----TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEE
T ss_pred HHHHHHHHhhc-----CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEE
Confidence 34444444443 245799999999 6654444432 3899999999863 122234566
Q ss_pred eecccCCCCC------CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 326 AFATRRLPYP------SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 326 ~~d~e~Lpf~------d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..|+.++++. +++||+|+|.. .+++ .+...+|+++.|+|||||+|++..
T Consensus 270 ~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~-~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 270 QGDQNDAEFLDRIARRYGPFDIVIDDG-SHIN-AHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp ECCTTCHHHHHHHHHHHCCEEEEEECS-CCCH-HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EecccccchhhhhhcccCCccEEEECC-cccc-hhHHHHHHHHHHhcCCCeEEEEEe
Confidence 6678888776 68999999864 3554 677899999999999999999985
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=105.95 Aligned_cols=97 Identities=7% Similarity=0.101 Sum_probs=73.5
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CC-CCCCCeeEEEecc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-YPSQAFDLIHCSR 346 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lp-f~d~sFDlVv~s~ 346 (666)
..+|||||||+|.++..++.. +|+++|+++.++..++... ...++. ..+...++.. ++ ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNL-ATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 479999999999999988873 8999999999998877544 444543 3444445433 33 3368999999653
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. ..+...++.++.++|||||++++..
T Consensus 151 ~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 A----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred c----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 3556789999999999999998864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.6e-09 Score=103.89 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=76.2
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc----------CCeEEEeCCcchHHHHHHHHHHHc-----CCCc
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----------RNVITMSIAPKDVHENQIQFALER-----GAPA 322 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~----------~~V~gvDiS~~~l~~a~~~~a~~r-----g~~~ 322 (666)
+...+.+.+.... .+..+|||||||+|.++..+++ .+|+++|+++.++..++....... ....
T Consensus 70 ~~~~~~~~l~~~~--~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 70 MHAFALEYLRDHL--KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHTTTTC--CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHhhC--CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence 3445555553111 3457999999999998887765 279999999999888775544321 1123
Q ss_pred eEEeecccCCCCCC-CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 323 MVAAFATRRLPYPS-QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 323 ~~~~~d~e~Lpf~d-~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...|... ++++ ++||+|++...+.++ +.++.++|||||.+++...
T Consensus 148 ~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 148 LIVEGDGRK-GYPPNAPYNAIHVGAAAPDT-------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEESCGGG-CCGGGCSEEEEEECSCBSSC-------CHHHHHTEEEEEEEEEEES
T ss_pred EEEECCccc-CCCcCCCccEEEECCchHHH-------HHHHHHHhcCCCEEEEEEe
Confidence 344445444 4444 789999988776554 2788999999999999864
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-09 Score=107.22 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=91.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc---cccccccCCCCCCCCCccceEEeccccccC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
..|||+|||.|.++.+|++.+.. +|+.+|. +.+++.+.++.- +.+...-.+.++.-+.+||+|.|..++.+.
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 121 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAK----KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI 121 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence 56999999999999999999752 5666663 678888887742 444444445555324899999999998887
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------------------------------------HHHH
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------------------------------------VMDE 629 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------------------------------------~~~~ 629 (666)
.+ ...+|.++.|+|||||.+++..... ..+.
T Consensus 122 ~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 198 (253)
T 3g5l_A 122 AS---FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTT 198 (253)
T ss_dssp SC---HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHH
T ss_pred hh---HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHH
Confidence 43 5899999999999999999972110 5678
Q ss_pred HHHHHHhcCcEEEEEe
Q 005981 630 LQEIGKAMGWHVTLRE 645 (666)
Q Consensus 630 ~~~i~~~l~W~~~~~~ 645 (666)
+.+++++-.+++....
T Consensus 199 ~~~~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 199 YIQTLLKNGFQINSVI 214 (253)
T ss_dssp HHHHHHHTTEEEEEEE
T ss_pred HHHHHHHcCCeeeeee
Confidence 8899999999876554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=110.83 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=72.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~ 598 (666)
..|||+|||+|.++..|++.+. +|+.+|. +.+++.+.++.-+.+.+.-++.++.-+.+||+|||..++.+..
T Consensus 36 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-- 108 (261)
T 3ege_A 36 SVIADIGAGTGGYSVALANQGL-----FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFS-- 108 (261)
T ss_dssp CEEEEETCTTSHHHHHHHTTTC-----EEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCS--
T ss_pred CEEEEEcCcccHHHHHHHhCCC-----EEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhcc--
Confidence 4699999999999999999876 5666663 4566665555445555666666553348999999999988874
Q ss_pred CCHHHHHHHhhhcccCCeEEEEEe
Q 005981 599 CNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 599 c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+...+|.|+.|+|| ||++++.+
T Consensus 109 -~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 109 -HLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp -SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred -CHHHHHHHHHHHhC-CcEEEEEE
Confidence 45899999999999 99888863
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-09 Score=101.88 Aligned_cols=127 Identities=11% Similarity=0.120 Sum_probs=87.2
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
.|||+|||.|.++.+|+.. +. +|+.+|. +.+++.+.++ |+ +.+.+...+.+. -+.+||+|.+..+
T Consensus 68 ~vLDiG~G~G~~~~~l~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~ 141 (207)
T 1jsx_A 68 RFIDVGTGPGLPGIPLSIVRPEA-----HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF 141 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc
Confidence 6999999999999999876 44 5666663 4666666553 54 445544433333 1378999998642
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEe--ccCCCCCceEEEEEEeC
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE--TAEGPHASYRILTADKR 662 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~--~~~~~~~~e~~l~~~k~ 662 (666)
..+..++.++.|+|||||++++.......+.++++.+ .|+..... .-........+++++|+
T Consensus 142 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 -------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 3467999999999999999999876666677777766 78765321 11222345777777774
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=109.91 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH--cCCC--ceEEeecccCC-------CCCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE--RGAP--AMVAAFATRRL-------PYPSQA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~--rg~~--~~~~~~d~e~L-------pf~d~s 338 (666)
...+|||+|||+|.++..++.+ +|+++|+++.++..++.+.... .++. ..+...|+..+ ++++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 4578999999999998888754 8999999999887776433220 3333 34455566655 356789
Q ss_pred eeEEEeccccccc-----------------ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 339 FDLIHCSRCRINW-----------------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 339 FDlVv~s~~l~h~-----------------~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
||+|+|+..+... ......+++++.++|||||.|++...
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999987332211 12356889999999999999999853
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-09 Score=109.68 Aligned_cols=94 Identities=15% Similarity=0.297 Sum_probs=70.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----c-----ccccccccCCCCCCCCCccceEEec-
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----G-----LIGVMHDWCEPFDTYPRTYDLLHAA- 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----G-----lig~~~~~ce~~~~yp~tyDliha~- 589 (666)
.|||+|||.|.++.+|++.|. +|+.+|. +.+++.+.++ | -+.+...-.+.++. +.+||+|.|.
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~ 158 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW-----EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISS 158 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC-----CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECH
T ss_pred cEEEEeccCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECC
Confidence 699999999999999999987 4566663 5777777665 2 24455555555553 7999999975
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.++.+. +..+...+|.++.|+|||||+++|.
T Consensus 159 ~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 159 GSINEL-DEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHHTTS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 444443 3334579999999999999999996
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-09 Score=112.81 Aligned_cols=94 Identities=9% Similarity=0.178 Sum_probs=71.3
Q ss_pred eEeeccccchHHHHHHhhC----CCceEEEEeeccC-CCCChhHHHhc----cc---cccccccCCCCCCCC-CccceEE
Q 005981 521 NVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLH 587 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDlih 587 (666)
+|||+|||+|.++.+|+++ |+ +|+.+| ++.|++.|.+| |+ +.+.+.- +..+| ..||+|.
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~-----~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D---~~~~~~~~~d~v~ 144 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNC-----KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD---IRDIAIENASMVV 144 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSC-----EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC---TTTCCCCSEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCC-----EEEEEECCHHHHHHHHHHHHhhccCceEEEeecc---cccccccccccce
Confidence 4999999999999999875 44 677787 47899888775 44 4444444 33445 6799999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+..++.+.... +...+|.||.|+|||||.+||+|.
T Consensus 145 ~~~~l~~~~~~-~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 145 LNFTLQFLEPS-ERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeeeeecCch-hHhHHHHHHHHHcCCCcEEEEEec
Confidence 98887765431 235789999999999999999853
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-09 Score=104.00 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=91.5
Q ss_pred eeEeeccccchHHHHHHhh--CCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC---CCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT---YPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~--~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~---yp~tyDlih 587 (666)
..|||+|||.|.++..|+. .+. .|+.+|. +.+++++.++ |+ +.+++...+.++. .+.+||+|.
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHL-----HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTC-----EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 4799999999999998884 344 5666663 5666666553 55 5666655555442 257999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC---hhHHHHHHHHHHhcCcEEEEEec-c-CCCCCceEEEEEEeC
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS---IDVMDELQEIGKAMGWHVTLRET-A-EGPHASYRILTADKR 662 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~---~~~~~~~~~i~~~l~W~~~~~~~-~-~~~~~~e~~l~~~k~ 662 (666)
|..+ .++..++.++.|+|||||++++.+. .+.+..+.+.++...++...... . ........+++++|.
T Consensus 147 ~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 147 ARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred Eecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 9752 4578999999999999999999753 34566777788888888754321 1 111234567777775
Q ss_pred C
Q 005981 663 L 663 (666)
Q Consensus 663 ~ 663 (666)
=
T Consensus 220 ~ 220 (240)
T 1xdz_A 220 K 220 (240)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=107.21 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=74.2
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
.+|||+|||.|.++.+|++. +. +|+.+| ++.+++.+.++.- +.+.+...+.++ .+.+||+|++..++.+.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 108 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVN-----VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV 108 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTT-----SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS
T ss_pred CEEEEecCcCCHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC
Confidence 46999999999999999987 65 455566 3578888887732 445555555555 35899999999988887
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
. +...+|.|+.|+|||||++++..
T Consensus 109 ~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 109 P---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp T---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred C---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 5 35799999999999999999974
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=107.59 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=87.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc---cccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
..|||+|||.|.++..|++.+. .+|+.+| ++.+++.+.++ |+ +.+.....+.++.-+.+||+|+|.++
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGHVT----GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTTCS----SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CEEEEeCCCCCHHHHHHHhccC----CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 4699999999999999999842 1455566 35677766655 44 55555555555532489999999999
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---------------------hHHHHHHHHHHhcCcEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---------------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
+.+. +...+|.++.|+|||||++++.+.. .....+.+++++-.++....
T Consensus 124 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 124 IYNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp GGGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred ceec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 8876 4589999999999999999997531 12457788888889887543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-09 Score=108.11 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHH-Hc---CCCceEEeecccCCCC--CCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL-ER---GAPAMVAAFATRRLPY--PSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~-~r---g~~~~~~~~d~e~Lpf--~d~sFDlVv 343 (666)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+.. .. .....+...|...++. .+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 4579999999999999988764 799999999988777654422 11 1223444455444432 468999999
Q ss_pred ecccccccccCh----HHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d~----~~~L~el~RvLkPGG~lv~st~ 377 (666)
+... .++.... ..+++++.|+|||||.+++...
T Consensus 175 ~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 8654 3332222 5889999999999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=111.12 Aligned_cols=135 Identities=18% Similarity=0.132 Sum_probs=97.6
Q ss_pred eeEeeccccchHHHHHHh--hC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALI--EQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~--~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha 588 (666)
..|||+|||.|.++.+|+ .. +. +|+.+|. +.+++.+.++ |+ +.+++...+.++ ++.+||+|.+
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~ 193 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGV-----QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-TREGYDLLTS 193 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTC-----EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-CCSCEEEEEC
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC-----eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-ccCCeEEEEE
Confidence 359999999999999995 22 44 5666663 5677777654 33 445544444443 4599999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---------------------------------------hHHHH
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------------------------DVMDE 629 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---------------------------------------~~~~~ 629 (666)
..++.+..+.-....+|.|+.|+|||||++++.+.. ...+.
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 999988776544446899999999999999998611 13678
Q ss_pred HHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 630 LQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 630 ~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
++++++.-.++....... .......++++|+
T Consensus 274 ~~~~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHHHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 899999999998655432 2234567888885
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-09 Score=100.27 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=96.1
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCC-CCCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDT-YPRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~-yp~tyDliha~ 589 (666)
+|||+|||.|.++.+|++. +. .+|+.+|. +.+++.+.++ |+ +.+.+...+.+.. .+.+||+|.++
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGEN----GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTT----CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 6999999999999999887 21 15677774 5677766655 44 5555555555553 34899999988
Q ss_pred cccccCCCC------CCHHHHHHHhhhcccCCeEEEEEeC------hhHHHHHHHHHHhcC---cEEEEEeccCCCCCce
Q 005981 590 GLFSVESKR------CNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMG---WHVTLRETAEGPHASY 654 (666)
Q Consensus 590 ~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~ii~d~------~~~~~~~~~i~~~l~---W~~~~~~~~~~~~~~e 654 (666)
..+....+. -+...++.++.|+|||||++++.+. .+....+.+.++.+. |++.....-+....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp 180 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPP 180 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCC
Confidence 655211111 1234799999999999999999852 234566777776665 8887776655556677
Q ss_pred EEEEEEeCC
Q 005981 655 RILTADKRL 663 (666)
Q Consensus 655 ~~l~~~k~~ 663 (666)
.+++.+|..
T Consensus 181 ~~~~~~~~~ 189 (197)
T 3eey_A 181 ILVCIEKIS 189 (197)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEcc
Confidence 888888853
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-09 Score=107.61 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=79.2
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp 580 (666)
+.+.+++..+ .+|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++ |+ +.+.+...+.++.-+
T Consensus 13 ~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 13 MIKTAECRAE--HRVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHTCCTT--CEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHhCcCCC--CEEEEEccCcCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 4455565554 3599999999999999999875 5666663 5677666554 44 455555556555333
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++||+|+|..++.+..+ ...+|.|+.|+|||||++++.+
T Consensus 86 ~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp TCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEEEECCchhhccC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999988888754 5899999999999999999974
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-09 Score=106.13 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=72.2
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CCCC--CCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP--SQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lpf~--d~sFDlVv~ 344 (666)
..+|||||||+|..+..++.. +|+++|+++.++..++... ...++. ..+...++.. ++.. .++||+|++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENL-QLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 479999999999999888764 7999999999998877544 444544 3344444433 3322 358999997
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
... ..+...++.++.++|||||++++...
T Consensus 143 d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 143 DAD----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSC----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCc----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 532 24456899999999999999998853
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=110.67 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=79.2
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFD 577 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~ 577 (666)
...+.+++..+ ..|||+|||.|+++.+|++. |+ +|+.+|. +.+++.+.++ |+ +.+.+...+.+
T Consensus 63 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 134 (302)
T 3hem_A 63 LALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDV-----NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF- 134 (302)
T ss_dssp HHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCC-----EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-
T ss_pred HHHHHcCCCCc--CEEEEeeccCcHHHHHHHHhCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-
Confidence 34444555544 35999999999999999998 76 5666663 5777777665 44 44444443334
Q ss_pred CCCCccceEEeccccccCCCC------CCHHHHHHHhhhcccCCeEEEEEe
Q 005981 578 TYPRTYDLLHAAGLFSVESKR------CNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 578 ~yp~tyDliha~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.+||+|.+..+|.+..+. -.+..+|.++.|+|||||.++|.+
T Consensus 135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7999999999999988543 456799999999999999999974
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-09 Score=103.81 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCchhHHHhccC---------CeEEEeCCcchHHHHHHHHHHHcC-----C-CceEEeecccCCC----C
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---------NVITMSIAPKDVHENQIQFALERG-----A-PAMVAAFATRRLP----Y 334 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---------~V~gvDiS~~~l~~a~~~~a~~rg-----~-~~~~~~~d~e~Lp----f 334 (666)
+..+|||||||+|.++..+++. +|+++|+++.++..++...... + . ...+...|..... .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD-KPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc-CccccccCCEEEEECChHhcccccCc
Confidence 4579999999999888777642 7999999999988877554443 3 2 2344455555544 4
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..++||+|++...+.++ +.++.++|||||.+++...
T Consensus 159 ~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEc
Confidence 56789999988775543 4788999999999999864
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7.2e-10 Score=105.74 Aligned_cols=88 Identities=18% Similarity=0.111 Sum_probs=66.9
Q ss_pred CCCCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC---CCCCeeEEEeccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY---PSQAFDLIHCSRCRI 349 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf---~d~sFDlVv~s~~l~ 349 (666)
+++.+|||||||. | ++|+|+.|+..++.+.. ....+...+++.+++ ++++||+|+|+.+++
T Consensus 11 ~~g~~vL~~~~g~-----------v-~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------S-PVEALKGLVDKLQALTG----NEGRVSVENIKQLLQSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp CTTSEEEEEECTT-----------S-CHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred CCCCEEEEecCCc-----------e-eeeCCHHHHHHHHHhcc----cCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence 3568999999996 2 27888888766553321 124455567778877 789999999988755
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|+..+...+|++++|+|||||+|++..
T Consensus 75 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 75 STTLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp CCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 553778999999999999999999974
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.7e-09 Score=104.00 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=74.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
.....++..+..+. -.++.+|||+|||+|.++..+++. .|+|+|+++.|+.... +.++++. .......|+..
T Consensus 60 kla~~ll~~l~~~~-l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~-~~a~~r~-nv~~i~~Da~~ 136 (232)
T 3id6_C 60 KLAGAILKGLKTNP-IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELL-LVAQRRP-NIFPLLADARF 136 (232)
T ss_dssp HHHHHHHTTCSCCS-CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHH-HHHHHCT-TEEEEECCTTC
T ss_pred HHHHHHHhhhhhcC-CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH-HHhhhcC-CeEEEEccccc
Confidence 33455666664321 245689999999999999887753 7999999998875432 3454442 33344445443
Q ss_pred CC---CCCCCeeEEEecccccccccChHH-HHHHHHHhccCCeEEEEEE
Q 005981 332 LP---YPSQAFDLIHCSRCRINWTRDDGI-LLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lp---f~d~sFDlVv~s~~l~h~~~d~~~-~L~el~RvLkPGG~lv~st 376 (666)
.. ...++||+|++... . .+... ++..+.++|||||.|+++.
T Consensus 137 ~~~~~~~~~~~D~I~~d~a-~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 137 PQSYKSVVENVDVLYVDIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp GGGTTTTCCCEEEEEECCC-C---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhccccceEEEEecCC-C---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 21 12468999997643 2 34444 4455667999999999984
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-08 Score=101.30 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=93.8
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhcc----ccccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDRG----LIGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~erG----lig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
..|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++- -+.+.....+.++ ++.+||+|.+..++
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 119 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA-----TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD-FEEKYDMVVSALSI 119 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC-----EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC-CCSCEEEEEEESCG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC-----eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC-CCCCceEEEEeCcc
Confidence 57999999999999999988 55 5666663 67888887762 2334444444433 23899999999998
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-----------------------------------------hHHHHHH
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------------------------------------DVMDELQ 631 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-----------------------------------------~~~~~~~ 631 (666)
.+..+. ....+|.|+.|+|||||++++.|.. ...+.+.
T Consensus 120 ~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 120 HHLEDE-DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp GGSCHH-HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred ccCCHH-HHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 887542 2235999999999999999998621 0124566
Q ss_pred HHHHhcCcEEEEEeccCCCCCceEEEEEEeCCC
Q 005981 632 EIGKAMGWHVTLRETAEGPHASYRILTADKRLL 664 (666)
Q Consensus 632 ~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~~~ 664 (666)
++++.-.++......... ...++...|+=|
T Consensus 199 ~ll~~aGF~~v~~~~~~~---~~~~~~~~~~~~ 228 (234)
T 3dtn_A 199 NWLKEAGFRDVSCIYKYY---QFAVMFGRKTEG 228 (234)
T ss_dssp HHHHHTTCEEEEEEEEET---TEEEEEEECC--
T ss_pred HHHHHcCCCceeeeeeec---ceeEEEEEeccc
Confidence 688888888654433322 356777777655
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-09 Score=114.53 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=74.7
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+.+.+.+..+ ....+|||||||+|.++..++++ +++++|+ +.++..++ +. ....+...|+.. ++
T Consensus 197 ~~~l~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-----~~-~~v~~~~~d~~~-~~ 265 (372)
T 1fp1_D 197 MKRMLEIYTGF---EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----PL-SGIEHVGGDMFA-SV 265 (372)
T ss_dssp HHHHHHHCCTT---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CC-TTEEEEECCTTT-CC
T ss_pred HHHHHHHhhcc---CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-----hc-CCCEEEeCCccc-CC
Confidence 34455544322 34579999999999999888764 6788898 76654332 21 123444556555 55
Q ss_pred CCCCeeEEEecccccccccChH--HHHHHHHHhccCCeEEEEEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDG--ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~--~~L~el~RvLkPGG~lv~st 376 (666)
+. ||+|++..+++|| ++.. .+|++++++|||||.+++.+
T Consensus 266 ~~--~D~v~~~~~lh~~-~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 266 PQ--GDAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CC--EEEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CCEEEEecccccC-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 9999999998888 5555 99999999999999999985
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-09 Score=102.39 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=74.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
.....+...+..+. -.+..+|||+|||+|.++..+++ .+|+++|+++.++..+.. .++.. ....+...|+..
T Consensus 57 ~~~~~i~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~-~~~~~-~~v~~~~~d~~~ 133 (227)
T 1g8a_A 57 KLGAAIMNGLKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP-IVEER-RNIVPILGDATK 133 (227)
T ss_dssp HHHHHHHTTCCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHSSC-TTEEEEECCTTC
T ss_pred hHHHHHHhhHHhcC-CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHH-HHhcc-CCCEEEEccCCC
Confidence 33455544443221 13457999999999999888774 379999999988866653 33322 233444455544
Q ss_pred C---CCCCCCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEE
Q 005981 332 L---PYPSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 L---pf~d~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st 376 (666)
. ....++||+|++... ..+.. .++.++.++|||||.+++..
T Consensus 134 ~~~~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 134 PEEYRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GGGGTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 112368999997543 23333 55999999999999999973
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=100.85 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=95.3
Q ss_pred eeEeecccc-chHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCC-CccceEEecc
Q 005981 520 RNVLDMRAG-FGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G-~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp-~tyDliha~~ 590 (666)
.+|||+||| .|.++.+|++. +. +|+.+|. +.+++.+.++ |+ +.+++...+.+..++ .+||+|.++-
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNC-----KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCC-----EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 469999999 99999999988 55 5666663 5666666543 54 555554433444555 8999999986
Q ss_pred ccccCCC----------------CCCHHHHHHHhhhcccCCeEEEEE--eChhHHHHHHHHHHhcCcEEEEEeccCCCCC
Q 005981 591 LFSVESK----------------RCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEIGKAMGWHVTLRETAEGPHA 652 (666)
Q Consensus 591 ~f~~~~~----------------~c~~~~~l~E~dRiLRPgG~~ii~--d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~ 652 (666)
.|....+ ...+..++.++.|+|||||++++. ...+....+.+.++...|++.......| ..
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g-~~ 210 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVG-TR 210 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCC-C-
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCC-Ce
Confidence 5543221 111468999999999999999984 3446788899999999998877655443 34
Q ss_pred ceEEEEEEeC
Q 005981 653 SYRILTADKR 662 (666)
Q Consensus 653 ~e~~l~~~k~ 662 (666)
.-.+|+.+|.
T Consensus 211 ~~~~l~f~~~ 220 (230)
T 3evz_A 211 WRHSLIFFKG 220 (230)
T ss_dssp CEEEEEEECC
T ss_pred EEEEEEEecc
Confidence 4567777663
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-09 Score=105.82 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=86.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||+|||.|.++..|++.+- . .|+.+|. +.+++.+.++ |+ +.+.+.-.+.++.-+.+||+|+|.+++
T Consensus 49 ~vLDiG~G~G~~~~~l~~~~~-~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 124 (257)
T 3f4k_A 49 KIADIGCGTGGQTLFLADYVK-G---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI 124 (257)
T ss_dssp EEEEETCTTSHHHHHHHHHCC-S---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred eEEEeCCCCCHHHHHHHHhCC-C---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence 699999999999999999842 1 5666663 5677766554 44 445555545555334899999999988
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---------------------hHHHHHHHHHHhcCcEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---------------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
.+. +...+|.++.|+|||||++++.+.. .....+.++++.-.++....
T Consensus 125 ~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 125 YNI----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp CCC----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhc----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 876 4689999999999999999998621 12466788888888887654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-09 Score=117.09 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=80.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~ 331 (666)
.+.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++ ++..++ +.+...++. ..+...+.++
T Consensus 145 ~~~~~il~~l~~----~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 145 TYQRAILQNHTD----FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHTGGG----TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhhh----cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhh
Confidence 355556655542 24579999999999999888764 799999998 876665 344555653 3455556777
Q ss_pred CCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
++++ ++||+|+|+.+.+++.. +....+.++.++|||||.+++.
T Consensus 219 ~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 219 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7665 68999998766666632 2346777899999999999864
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=100.63 Aligned_cols=94 Identities=14% Similarity=0.250 Sum_probs=71.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEecc-cc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAG-LF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~-~f 592 (666)
.+|||+|||.|.++..|++. . +|+.+|. +.+++.+.++ |. +.+.+.-.+.++ ++.+||+|.+.. ++
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~-~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH-Y-----EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-LPEPVDAITILCDSL 107 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT-S-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-CSSCEEEEEECTTGG
T ss_pred CeEEEecCCCCHHHHHHhhC-C-----eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-CCCCcCEEEEeCCch
Confidence 57999999999999999987 4 5666663 5777777665 22 344433333333 458999999985 88
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
.+..+..+...+|.++.|+|||||.+++
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 8876555667899999999999999998
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=106.83 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=89.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc--ccccccccCCCC--CCCC-CccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG--LIGVMHDWCEPF--DTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG--lig~~~~~ce~~--~~yp-~tyDliha~~~f~ 593 (666)
+.|||+|||+|+|+..|+++|+ -.|+.+| +++||..+..+. ++..-....+.+ ..+| .+||+|.|+..|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga----~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA----KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC----CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence 3599999999999999999874 2577777 478998865432 111111111111 1134 4699999987776
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeC----------------------hhHHHHHHHHHHhcCcEEEEEecc--CC
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------------------IDVMDELQEIGKAMGWHVTLRETA--EG 649 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~----------------------~~~~~~~~~i~~~l~W~~~~~~~~--~~ 649 (666)
. +..+|.|+.|+|||||.+++-.. ....+++...+....|.+...... .|
T Consensus 163 s------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g 236 (291)
T 3hp7_A 163 S------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQG 236 (291)
T ss_dssp C------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCC
T ss_pred h------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Confidence 3 36899999999999999998511 124677888899999997654332 12
Q ss_pred C-CCceEEEEEEe
Q 005981 650 P-HASYRILTADK 661 (666)
Q Consensus 650 ~-~~~e~~l~~~k 661 (666)
+ ...|-++.++|
T Consensus 237 ~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 237 GHGNIEFLAHLEK 249 (291)
T ss_dssp GGGCCCEEEEEEE
T ss_pred CCcCHHHHHHhhh
Confidence 2 34577777776
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-09 Score=110.54 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=77.0
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTY 579 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~y 579 (666)
.+.+++..+ .+|||+|||.|.++..|++. |+ +|+.+|. +.+++.+.++ |+ +.+.+...+. +
T Consensus 83 ~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~ 152 (318)
T 2fk8_A 83 LDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDV-----NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED---F 152 (318)
T ss_dssp HTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---C
T ss_pred HHhcCCCCc--CEEEEEcccchHHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH---C
Confidence 344444444 36999999999999999988 76 5666663 5777777765 44 4444433333 4
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|.+||+|.+..+|.+... -+...+|.|+.|+|||||.+++.+
T Consensus 153 ~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 153 AEPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp CCCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 689999999999988753 346799999999999999999974
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-09 Score=101.18 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=70.8
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CCCCCCCeeEEEecc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYPSQAFDLIHCSR 346 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lpf~d~sFDlVv~s~ 346 (666)
..+|||||||+|..+..++.. +|+++|+++.++..++..... .+.. ..+...+... ++..++ ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD-NGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 368999999999998888754 899999999998877754443 3432 2334444332 344446 99999753
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. ..+...++.++.++|||||++++..
T Consensus 135 ~----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 2566789999999999999999874
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-08 Score=105.73 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=67.4
Q ss_pred CCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHH-H-HHcCCCceEE--eecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQF-A-LERGAPAMVA--AFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~-a-~~rg~~~~~~--~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
++.+|||||||+|.++..+++. +|+|+|+++ |+..+..+. . ...+....+. ..|+..++ +++||+|+|..+
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~- 149 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG- 149 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-
T ss_pred CCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-
Confidence 4579999999999999999886 999999998 532111000 0 0001123344 45666665 689999998655
Q ss_pred cccccCh----H---HHHHHHHHhccCCe--EEEEEEC
Q 005981 349 INWTRDD----G---ILLLEVNRMLRAGG--YFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~----~---~~L~el~RvLkPGG--~lv~st~ 377 (666)
++..+. . .+|.++.++||||| .|++..+
T Consensus 150 -~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 150 -ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp -CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred -ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 322221 1 37899999999999 9999865
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.9e-09 Score=106.19 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++. .++..++.. .+...|+..++. .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~-n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE-NIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH-HHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 4579999999999999888753 79999999999988764 444555533 455556666644 5789999976542
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...++.++.++|+|||.++++..
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 567789999999999999999865
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-09 Score=105.86 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=73.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc-----ccccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----LIGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG-----lig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
.+|||+|||.|.++..|++.+. +|+.+| ++.+++.+.++- -+.+.+...+.++.-+.+||+|++..++.
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARGY-----RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTTC-----EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CEEEEeCCcCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 5699999999999999999876 566666 357888887762 14444444455542238999999998888
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+..+ ...+|.|+.|+|||||++++.
T Consensus 116 ~~~~---~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPD---WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCTT---HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCC---HHHHHHHHHHHCCCCcEEEEE
Confidence 7764 579999999999999999986
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=109.27 Aligned_cols=115 Identities=16% Similarity=0.051 Sum_probs=82.9
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~ 331 (666)
+...+..+... .+..+|||+|||+|.++..++. .+|+|+|+++.++..++.+ +...++. ..+...|+.+
T Consensus 191 la~~l~~~~~~----~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n-~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 191 LAQALLRLADA----RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHTTC----CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHH-HHHTTCTTCEEEECCGGG
T ss_pred HHHHHHHHhCC----CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHH-HHHcCCCceEEEeCChhh
Confidence 44445554431 3457899999999998877765 4899999999999888754 4445653 4566667888
Q ss_pred CCCCCCCeeEEEecccccccccC-------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d-------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++.+.+.||+|+|+........+ ...++.++.++|||||.+++.+.
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 88777789999986542221111 25788999999999999999975
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.5e-09 Score=108.92 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=72.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCc--hhHHHh----c-cCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVA--SFGAYL----L-PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG--~~a~~L----~-~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
.++.+..+.+.. ....++|||||||++ ..+..+ . ..+|+++|.|+.|+..++............+...|+
T Consensus 64 ~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~ 140 (277)
T 3giw_A 64 DWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT
T ss_pred HHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc
Confidence 344454444431 124578999999973 222222 2 238999999999998776443321111234555565
Q ss_pred cCCC----CC--CCCee-----EEEecccccccccC---hHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLP----YP--SQAFD-----LIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lp----f~--d~sFD-----lVv~s~~l~h~~~d---~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++. .+ .+.|| .|+++.+ +||..+ +..+++++.++|+|||+|+++..
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~av-LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAI-VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESC-GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhh-HhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 5531 01 24455 4666655 555565 45899999999999999999965
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.6e-09 Score=97.50 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=84.8
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc---cccc-cccCCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVM-HDWCEPFDTY 579 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~-~~~ce~~~~y 579 (666)
.+.+..+ ..|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ + .+ .+..+.++..
T Consensus 20 ~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 20 ALAPKPH--ETLWDIGGGSGSIAIEWLRSTPQT-----TAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHCCCTT--EEEEEESTTTTHHHHHHHTTSSSE-----EEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred HhcccCC--CeEEEeCCCCCHHHHHHHHHCCCC-----eEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence 3444444 46999999999999999987 33 5666774 5677777654 43 3 33 3333444443
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~ 643 (666)
+.+||+|.+...+.+ ..++.++.|+|||||++++.+. .+....+.+++++..+++..
T Consensus 92 ~~~~D~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp CSCCSEEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred CCCCCEEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence 479999999877655 4799999999999999999864 45677788888888777643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.2e-09 Score=108.05 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCC-------CceEE--eecccCCCCCCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGA-------PAMVA--AFATRRLPYPSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~-------~~~~~--~~d~e~Lpf~d~sFDlVv 343 (666)
++.+|||||||+|.++..++++ +|+|+|+++ |+..+ +++.. ...+. ..|+..++ +++||+|+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a-----~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSG-----HEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTT-----SCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhh-----hhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 4579999999999999999886 899999998 54221 11111 23444 55677665 68999999
Q ss_pred ecccccccccCh----H---HHHHHHHHhccCCe--EEEEEEC
Q 005981 344 CSRCRINWTRDD----G---ILLLEVNRMLRAGG--YFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d~----~---~~L~el~RvLkPGG--~lv~st~ 377 (666)
|..+ ++..+. . .+|.++.++||||| .|++..+
T Consensus 154 sd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 154 CDIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp ECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred ECCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 8655 332221 1 37899999999999 9999865
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-09 Score=106.35 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=90.1
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc------cccccccCCCCCCCCCccceEEeccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl------ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
-.+|||+|||.|.++.+|++.+. .+|+.+| ++.+++.+.++.- +.+...-.+.++.-+.+||+|.+..+
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF----REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC----SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHhcC----CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence 45799999999999999998842 2566666 3577777766532 33443333444432368999999998
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh---------------HHHHHHHHHHhcCcEEEEEec
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID---------------VMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~---------------~~~~~~~i~~~l~W~~~~~~~ 646 (666)
+.+..+. .+..+|.++.|+|||||+++|.|... ..+.++++++...+++.....
T Consensus 156 l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 156 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 8887652 23589999999999999999976321 378899999999998766543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=99.28 Aligned_cols=120 Identities=17% Similarity=0.197 Sum_probs=86.7
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCC--CceEEEEeeccCC-CCChhHHHhc----cc--cccccccC-CCCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQK--FDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWC-EPFDTY 579 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~--~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~c-e~~~~y 579 (666)
..+++..+ .+|||+|||.|.++.+|++.+ . +|+.+|. +.+++.+.++ |+ +.+.+... +.+. .
T Consensus 34 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~ 105 (204)
T 3e05_A 34 SKLRLQDD--LVMWDIGAGSASVSIEASNLMPNG-----RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-D 105 (204)
T ss_dssp HHTTCCTT--CEEEEETCTTCHHHHHHHHHCTTS-----EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-T
T ss_pred HHcCCCCC--CEEEEECCCCCHHHHHHHHHCCCC-----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-c
Confidence 34455544 469999999999999999885 4 5566663 5677766654 44 44443333 2222 2
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~ 643 (666)
..+||+|.+...+. ++..++.++.|+|||||.+++.+. .+....+.+++++..|++..
T Consensus 106 ~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 106 LPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp SCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 26899999886543 568999999999999999999854 46788888999999986543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-09 Score=113.45 Aligned_cols=96 Identities=20% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
...+|||||||+|.++..++++ +++++|++. ++. + +.+...+.. ..+...|+. .+++ +||+|++..+
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~-~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v 256 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--R-HRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRI 256 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--T-CCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--c-ccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence 4579999999999999888764 788899843 221 0 111111221 234445553 3444 8999999999
Q ss_pred ccccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++| ++. ..+|++++++|||||.+++.+.
T Consensus 257 lh~~-~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 257 LHNW-GDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp GGGS-CHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred ccCC-CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8888 555 5999999999999999999864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=98.08 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=62.8
Q ss_pred CCCeEEEECCCCchhHHHhcc-------------CCeEEEeCCcchHHHHHHHHHHHcCCCceEE-eecccCCC------
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-------------RNVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP------ 333 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-------------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d~e~Lp------ 333 (666)
+..+|||+|||+|.++..+++ .+|+++|+++... .....+. ..|.....
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHH
Confidence 457999999999998887764 3599999998420 0112233 33433321
Q ss_pred --CCCCCeeEEEeccccc---ccccCh-------HHHHHHHHHhccCCeEEEEEEC
Q 005981 334 --YPSQAFDLIHCSRCRI---NWTRDD-------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 --f~d~sFDlVv~s~~l~---h~~~d~-------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|+|..+.+ ++..+. ..+++++.++|||||.|++...
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3456899999864322 222222 4789999999999999999864
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-09 Score=98.99 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=89.3
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----ccccc-ccCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMH-DWCEPFDT 578 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~-~~ce~~~~ 578 (666)
.+.+....+ ..|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++ |+ +.+.+ +..+.+.
T Consensus 45 ~~~~~~~~~--~~vLdiG~G~G~~~~~~~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~- 116 (194)
T 1dus_A 45 VENVVVDKD--DDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK- 116 (194)
T ss_dssp HHHCCCCTT--CEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-
T ss_pred HHHcccCCC--CeEEEeCCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc-
Confidence 344444433 4699999999999999999865 5666663 5666666654 43 33333 3333222
Q ss_pred CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEE
Q 005981 579 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRIL 657 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l 657 (666)
+.+||+|.++..|.+. .-.+..++.++.|+|||||.+++.+.. +....+.+.++..-+++....... ...++
T Consensus 117 -~~~~D~v~~~~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~ 189 (194)
T 1dus_A 117 -DRKYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKG----GYRVL 189 (194)
T ss_dssp -TSCEEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEET----TEEEE
T ss_pred -cCCceEEEECCCcccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCC----cEEEE
Confidence 4799999998766542 123568999999999999999998544 344445665555534444444332 35677
Q ss_pred EEEe
Q 005981 658 TADK 661 (666)
Q Consensus 658 ~~~k 661 (666)
.++|
T Consensus 190 ~~~k 193 (194)
T 1dus_A 190 KSKK 193 (194)
T ss_dssp EEEC
T ss_pred EEee
Confidence 7665
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-08 Score=104.46 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-c---CCCceEEeecccC-CCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-r---g~~~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+... . .....+...|... ++..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4579999999999999998865 7999999999888776544321 1 1123344444322 3334578999997
Q ss_pred ccccccccc-----ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWTR-----DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~~-----d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
... .++.. ....+++++.++|+|||.+++.+.
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 532 33211 225889999999999999999853
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=100.79 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+..+|||+|||+|.++..+++. +|+++|+++.++..++...+ ..++ ...+...+.....+++++||+|++.
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~---- 165 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD---- 165 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTTCBSEEEEC----
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCCcccEEEEC----
Confidence 4579999999999998888753 89999999998887765443 3444 2234444555433356789999963
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. +++..++.++.++|||||.+++..+
T Consensus 166 -~-~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 166 -V-REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp -S-SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred -C-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 4667899999999999999999864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-09 Score=108.25 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=91.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----------------------------------
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG---------------------------------- 564 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG---------------------------------- 564 (666)
.+|||+|||+|.++..++..|+ -+|+.+| ++.+++.+.++-
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~----~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSF----QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTE----EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhh----cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 5699999999999888888764 2677777 467777665420
Q ss_pred -ccc-cc-cccCC--CCCCC-CCccceEEeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEEeChh------------
Q 005981 565 -LIG-VM-HDWCE--PFDTY-PRTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------ 625 (666)
Q Consensus 565 -lig-~~-~~~ce--~~~~y-p~tyDliha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~------------ 625 (666)
-|. +. .|-.+ ++... ..+||+|.|..++.+. .+.-++..+|.+|.|+|||||+|++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 011 22 22222 12211 3699999999888763 333456789999999999999999985211
Q ss_pred ----HHHHHHHHHHhcCcEEEEEecc---CCC----CCceEEEEEEeC
Q 005981 626 ----VMDELQEIGKAMGWHVTLRETA---EGP----HASYRILTADKR 662 (666)
Q Consensus 626 ----~~~~~~~i~~~l~W~~~~~~~~---~~~----~~~e~~l~~~k~ 662 (666)
..+.+.+++..-..++.....- ... ....-+++|+|.
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 3567888888888876543221 100 123457888885
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=100.52 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=86.2
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCC-CCCC-CccceEEeccccccC
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPF-DTYP-RTYDLLHAAGLFSVE 595 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~-~~yp-~tyDliha~~~f~~~ 595 (666)
-.+|||+|||.|.++.+|++.|. +|+.+|. +.+++.+.++.. .+.+...+.+ ..++ .+||+|.+.+++.+.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~-----~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~ 106 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKENGT-----RVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHL 106 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTTTC-----EEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGS
T ss_pred CCcEEEeCCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhc
Confidence 35799999999999999999875 5666663 567777766643 3333333321 3344 899999999999887
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEeCh------------------------------hHHHHHHHHHHhcCcEEEEE
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------------------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
.+ ...+|.++.|+|||||++++.... -..+.++++++...+++...
T Consensus 107 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 182 (230)
T 3cc8_A 107 FD---PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV 182 (230)
T ss_dssp SC---HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CC---HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence 64 379999999999999999997421 12567778888888876544
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-09 Score=108.72 Aligned_cols=97 Identities=11% Similarity=0.172 Sum_probs=73.9
Q ss_pred eeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEec
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
-.+|||+|||+|.++..|++. +. +|+.+|. +.+++.+.++ ++ +.+..+-++.++ ++.+||+|+|.
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~ 96 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGS-----KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICH 96 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTC-----EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-cCCCeeEEEEC
Confidence 357999999999999999987 45 4555663 5667666554 22 445555555544 47899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
.++.+..+ ...+|.++.|+|||||++++.+..
T Consensus 97 ~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 97 AFLLHMTT---PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ChhhcCCC---HHHHHHHHHHHcCCCCEEEEEecc
Confidence 98888754 479999999999999999998654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.3e-09 Score=112.43 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..++++ +++++|+ +.++..+ ++. ....+...|+.. +++.+ |+|++..++|
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDA-----PAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----CCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhh-----hhc-CCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 4579999999999999888763 7899998 6555332 221 223455556554 66644 9999999988
Q ss_pred ccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|.++ ...+|++++++|||||.+++.+.
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 89432 23889999999999999999865
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-09 Score=102.79 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc-cCCC-CC----CCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-YP----SQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~-e~Lp-f~----d~sFDl 341 (666)
..+|||||||+|.++..++.. +|+++|+++.++..++... ...++. ..+...+. +.++ +. .++||+
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYW-EKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 368999999999999888764 7999999999998877544 444543 33444443 2222 11 178999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|++.. ...+...++.++.++|||||++++..
T Consensus 144 v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 144 IYIDA----DKANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99543 23456789999999999999999975
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=109.56 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=78.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~ 331 (666)
.|.+.|.+.... .++++|||||||+|.++...++. +|+|+|.++ ++..|+ +.++.+++.. .+...+++.
T Consensus 70 aY~~Ai~~~~~~----~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~-~~~~~n~~~~~i~~i~~~~~~ 143 (376)
T 4hc4_A 70 AYRLGILRNWAA----LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAR-EVVRFNGLEDRVHVLPGPVET 143 (376)
T ss_dssp HHHHHHHTTHHH----HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhCHHh----cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHH-HHHHHcCCCceEEEEeeeeee
Confidence 455556543332 13478999999999888766654 799999986 666654 5666677653 444556778
Q ss_pred CCCCCCCeeEEEecccc--cccccChHHHHHHHHHhccCCeEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCR--INWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l--~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.++ +.||+|+|..+. +..-.....++....|.|||||.++-+
T Consensus 144 ~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 144 VELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 8776 689999973321 222234668888999999999998654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-09 Score=108.81 Aligned_cols=119 Identities=12% Similarity=-0.003 Sum_probs=85.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc-c----------------------cccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-L----------------------IGVMHDWCEP 575 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG-l----------------------ig~~~~~ce~ 575 (666)
..|||+|||.|.++.+|+++|+ +|+.+| ++.+++.+.++. + |.+++.-.+.
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~-----~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH-----TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC-----EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CeEEEeCCCCcHHHHHHHHCCC-----eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 3599999999999999999997 678888 468888886542 1 3333333222
Q ss_pred CCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE-E-e--C--------hhHHHHHHHHHHhcCcEEE
Q 005981 576 FDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI-R-D--S--------IDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 576 ~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii-~-d--~--------~~~~~~~~~i~~~l~W~~~ 642 (666)
++.-+ .+||+|.+.++|.+.. ......++.||.|+|||||.+++ + . . .-..++++.++.. .|++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 33212 7999999998888775 34557899999999999999964 3 1 0 0135778888877 58876
Q ss_pred EEe
Q 005981 643 LRE 645 (666)
Q Consensus 643 ~~~ 645 (666)
...
T Consensus 223 ~~~ 225 (252)
T 2gb4_A 223 CLE 225 (252)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-09 Score=108.12 Aligned_cols=95 Identities=13% Similarity=0.266 Sum_probs=72.6
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
..|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.....+.++.-+.+||+|++..
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDA-----EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF 113 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence 46999999999999999988 44 5566663 5677766655 44 4444444444443348999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++.+..+ .+.+|.++.|+|||||++++.+
T Consensus 114 ~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 114 VLEHLQS---PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9888765 4699999999999999999975
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-09 Score=110.82 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=73.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----c------cccccccCCCCC---CCCCccce
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L------IGVMHDWCEPFD---TYPRTYDL 585 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG----l------ig~~~~~ce~~~---~yp~tyDl 585 (666)
.+|||+|||+|.++..|++.|. +|+.+| ++.+++.+.++. . +-+...-.+.++ .-+.+||+
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 4699999999999999999986 677777 367888886642 1 112222212222 22389999
Q ss_pred EEec-cccccCCC----CCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 586 LHAA-GLFSVESK----RCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 586 iha~-~~f~~~~~----~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
|+|. .+|.|..+ ......+|.++.|+|||||++++...
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998 78888776 33467999999999999999999743
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=108.24 Aligned_cols=103 Identities=8% Similarity=-0.062 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccCCCC----CCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPY----PSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~Lpf----~d~sFDlVv~ 344 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..++. ..+...|+..+.. ..++||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~-~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQV-LAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH-HHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-HcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 3468999999999999988865 89999999999988875444 34543 3444445443321 1468999998
Q ss_pred cccc---------cccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCR---------INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l---------~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.... .++..+...++.++.++|+|||++++...
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 5332 12223456889999999999999887754
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-09 Score=102.03 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=88.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----ccccccccCCCCCCCC-CccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG----lig~~~~~ce~~~~yp-~tyDliha~~~f~ 593 (666)
..|||+|||.|.++..|++.|.. +|+.+| ++.+++.+.++. -+.+.+.-.+.++ ++ .+||+|.+.++|.
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~----~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP----NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC----CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC-SCSSCEEEEEEESHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC----cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC-CCCCcccEEEECcchh
Confidence 35999999999999999998751 455566 356777776653 2444444434443 44 8999999988876
Q ss_pred cCC------------CCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHH--HhcCcEEEEEeccCCCCCceEEEEE
Q 005981 594 VES------------KRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIG--KAMGWHVTLRETAEGPHASYRILTA 659 (666)
Q Consensus 594 ~~~------------~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~--~~l~W~~~~~~~~~~~~~~e~~l~~ 659 (666)
+.. +..+...+|.|+.|+|||||.+++.+.....- .+.++ ....|+......+++ ....+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 195 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF-RTRHYAQAYYGWSLRHATYGSG--FHFHLYLM 195 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHH-HHHHHCCGGGCEEEEEEEESGG--GCEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHH-HHHHHhccccCcEEEEEEecCc--ceEEEEEE
Confidence 533 11245799999999999999999987654221 22333 344687765544333 23456666
Q ss_pred Ee
Q 005981 660 DK 661 (666)
Q Consensus 660 ~k 661 (666)
+|
T Consensus 196 ~~ 197 (215)
T 2pxx_A 196 HK 197 (215)
T ss_dssp EE
T ss_pred Ee
Confidence 65
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=104.07 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-cCC---CceEEeecccC-CCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RGA---PAMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-rg~---~~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+... .+. ...+...|... ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4579999999999999998865 7999999999988777544331 122 22344444322 3334578999997
Q ss_pred cccccccccC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
... .++... ...+++++.++|+|||.+++...
T Consensus 155 d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 543 343221 25899999999999999999853
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7.2e-09 Score=111.29 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..++++ +++++|+ +.++..+ ++. ....+...|+.. +++.+ |+|++..++|
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEA-----PQF-PGVTHVGGDMFK-EVPSG--DTILMKWILH 270 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----CCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhh-----hhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhc
Confidence 4579999999999999888753 7899998 6554322 221 233455556655 66654 9999999988
Q ss_pred ccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|.++ ...+|++++++|||||++++.+.
T Consensus 271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 271 DWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 89432 34899999999999999999864
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=107.18 Aligned_cols=115 Identities=11% Similarity=-0.029 Sum_probs=86.1
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCC-CccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDliha~ 589 (666)
..|||+|||.|.++..|+++ ++ .|+.+|. +.+++.+.++ |+ +.+...-.+.++ ++ .+||+|.+.
T Consensus 119 ~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 192 (312)
T 3vc1_A 119 DTLVDAGCGRGGSMVMAHRRFGS-----RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-FDKGAVTASWNN 192 (312)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-CCCCCEeEEEEC
Confidence 46999999999999999998 76 4555663 5677666654 54 455555555554 44 899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC----hh-------------------HHHHHHHHHHhcCcEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----ID-------------------VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~----~~-------------------~~~~~~~i~~~l~W~~~~~ 644 (666)
.++.+.. ...+|.|+.|+|||||++++.+. .. ..+.+++++++-.+++...
T Consensus 193 ~~l~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 193 ESTMYVD----LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp SCGGGSC----HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred CchhhCC----HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 9988873 68999999999999999999741 10 2466778888888876543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=101.24 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=70.5
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CC-CC---CCCeeEE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-YP---SQAFDLI 342 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lp-f~---d~sFDlV 342 (666)
..+|||||||+|.++..+++. +|+++|+++.++..++... ...+.. ..+...+... ++ +. .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNI-ERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 479999999999999888764 7999999999988776544 344543 2344444322 21 11 2679999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++... ......++.++.++|||||++++..
T Consensus 138 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 138 FIDAD----KQNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EECSC----GGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEcCC----cHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 97543 2345689999999999999998874
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=98.30 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=69.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC-
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY- 334 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf- 334 (666)
.+.++.+....+ .++.+|||+|||+|.++..++++ +|+|+|+++... .....+...|+...+.
T Consensus 12 KL~ei~~~~~~~---~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 12 KLEFLLDRYRVV---RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIF 77 (191)
T ss_dssp HHHHHHHHHCCS---CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHH
T ss_pred HHHHHHHHcCCC---CCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHH
Confidence 344444444322 34589999999999999999876 899999998521 0123344555555431
Q ss_pred -------C---CCCeeEEEecccccccc----cC-------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 -------P---SQAFDLIHCSRCRINWT----RD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 -------~---d~sFDlVv~s~~l~h~~----~d-------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .++||+|+|... .... .+ ...++.++.++|||||.|++..+
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhhcccCCcceEEecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 148999998542 1111 11 23678889999999999998864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.8e-09 Score=105.42 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=72.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~ 598 (666)
.+|||+|||.|.++..|++.|. +|+.+|. +.+++.+.++..-.+.....+.++.-+.+||+|.+.+++.+...
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~- 129 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE- 129 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred CeEEEeCCCcCHHHHHHHHcCC-----eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccc-
Confidence 4799999999999999999976 5666663 67888888875411333333444422389999999876655432
Q ss_pred CCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 599 CNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 599 c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+...+|.|+.|+|||||.+++...
T Consensus 130 -~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 130 -NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 268999999999999999999753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=99.03 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=85.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
..|||+|||.|.++.+|++.|. .+|+.+|. +.+++.+.++ |+ +.+.+.-.+. ..+.+||+|.+...+
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA----KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILA 135 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCH
T ss_pred CEEEEECCCCCHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcH
Confidence 4699999999999999998864 25666663 5677776665 44 4444333322 235999999998665
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcCcEEEEEecc
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTLRETA 647 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~W~~~~~~~~ 647 (666)
.+ +..+|.++.|+|||||++++.+ .....+.+.++++...++.......
T Consensus 136 ~~------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 136 EI------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp HH------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE
T ss_pred HH------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeecc
Confidence 43 4688999999999999999985 3446788889999999988665443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-09 Score=104.73 Aligned_cols=97 Identities=9% Similarity=0.100 Sum_probs=71.8
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CCCC--CCCeeEEEec
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP--SQAFDLIHCS 345 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lpf~--d~sFDlVv~s 345 (666)
..+|||||||+|.++..++.. +|+++|+++.++..++.... ..+.. ..+...+... ++.. +++||+|++.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK-ALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH-HTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 468999999999988877653 89999999998887765443 34442 3344444443 2322 5789999976
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
... .+...++.++.++|||||.+++.+
T Consensus 134 ~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 442 466799999999999999999984
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=106.62 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-cC---CCceEEeecccC-CCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RG---APAMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-rg---~~~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
...+|||||||+|.++..+++. +|+++|+++.++..++..+... .+ ....+...|... ++..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4579999999999999999865 7999999999887776543221 01 122344444332 3334678999997
Q ss_pred cccccccccCh----HHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~----~~~L~el~RvLkPGG~lv~st 376 (666)
... .++.... ..+++++.++|+|||.+++..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 543 4442221 578999999999999999985
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.1e-08 Score=104.01 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-cC---CCceEEeecccC-CCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RG---APAMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-rg---~~~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
...+|||||||+|.++..++++ +|+++|+++.++..++..+... .+ ....+...|... ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 4579999999999999999865 7999999999988777554331 11 223344444332 3344688999997
Q ss_pred cccccccccC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
... .++... ...+++++.++|||||.+++...
T Consensus 175 d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 175 DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 543 433221 24789999999999999999863
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=5e-09 Score=108.62 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=71.9
Q ss_pred eeeEeeccccchHHHHHHhh---CCCceEEEEeeccCC-CCChhHHHhc-----cc---cccccccCCCCCCCC------
Q 005981 519 LRNVLDMRAGFGGFAAALIE---QKFDCWVMNVVPVSG-FNTLPVIYDR-----GL---IGVMHDWCEPFDTYP------ 580 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~---~~~~vwvmnv~~~~~-~~~l~~~~er-----Gl---ig~~~~~ce~~~~yp------ 580 (666)
-..|||+|||.|.++..|++ .+. +|+.+|. +.+++.+.++ |. +.+.+.-.+.++.-.
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPFE-----QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCCS-----EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC-----EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccC
Confidence 45699999999999999994 555 6667763 6778777775 32 555555555544222
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
.+||+|+|..++.+. +...+|.++.|+|||||++++
T Consensus 112 ~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 112 QKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 699999999888877 568999999999999999999
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=7.1e-09 Score=104.71 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=68.2
Q ss_pred CCeEEEECCCCchhHHHhcc--------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC---CCCC-CCeeEE
Q 005981 275 IRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL---PYPS-QAFDLI 342 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L---pf~d-~sFDlV 342 (666)
..+|||||||+|..+..|++ .+|+|+|+++.++..++ .......+...|...+ ++.. .+||+|
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 36899999999988887653 38999999999876553 2222334555565553 5433 479999
Q ss_pred EecccccccccChHHHHHHHHH-hccCCeEEEEEE
Q 005981 343 HCSRCRINWTRDDGILLLEVNR-MLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~R-vLkPGG~lv~st 376 (666)
++... | .+...+|.++.| +|||||++++..
T Consensus 157 ~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 157 FIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEESS--C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 97544 3 366789999998 999999999974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=107.10 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=68.4
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHc------C-----CCceEEeecccCC--CCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER------G-----APAMVAAFATRRL--PYP 335 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~r------g-----~~~~~~~~d~e~L--pf~ 335 (666)
++.+|||+|||+|.++..++. .+|+++|+++.++..++.+..... + ....+...|...+ +++
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 457999999999998887764 379999999999988876554321 1 1234445565555 456
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|++.. .++..++.++.++|||||.+++...
T Consensus 185 ~~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 185 SLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ---EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 77899999743 2334589999999999999998853
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-08 Score=99.76 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=58.7
Q ss_pred eEeeccccchHHHHHHhhCC--CceEEEEeeccCC-CC----ChhHHHhccccc-cccccCCC--CCCCCCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQK--FDCWVMNVVPVSG-FN----TLPVIYDRGLIG-VMHDWCEP--FDTYPRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~--~~vwvmnv~~~~~-~~----~l~~~~erGlig-~~~~~ce~--~~~yp~tyDliha~~ 590 (666)
+|||+|||+|.++..|++.. . .|+.+|. +. +++.+.++.-+. +..|..+. +..++.+||+|.|+.
T Consensus 60 ~VLDlGcGtG~~~~~la~~~~~~-----~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 134 (210)
T 1nt2_A 60 RVLYLGAASGTTVSHLADIVDEG-----IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 134 (210)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTS-----EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred EEEEECCcCCHHHHHHHHHcCCC-----EEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence 59999999999999998762 2 4566663 33 345454442222 22333221 123458999999872
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.. .-....++.|+.|+|||||.+++.
T Consensus 135 --~~---~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 --AQ---KNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp --CS---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --cC---hhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 112235689999999999999997
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=103.97 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc----CCCceEEeecccC-CCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r----g~~~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+.... .....+...|... ++..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 4579999999999999999865 79999999988876654332110 1122344444332 2223578999997
Q ss_pred cccccccccC--h--HHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWTRD--D--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~~d--~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
... .++... . ..+++++.++|+|||.+++...
T Consensus 158 d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 543 333222 1 5899999999999999999854
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.3e-09 Score=100.09 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=81.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEecccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
+|||+|||.|.++.+|++.|. +|+.+|. +.+++.+.++ |+ +.+.....+.++.-+.+||+|.+. +.+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY-----EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC-----EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 799999999999999999976 6677774 5677777665 43 444444444443223899999985 444
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEeC----h-------------hHHHHHHHHHHhcCcEEEEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS----I-------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d~----~-------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
. ...+...+|.++.|+|||||++++.+. . -..++++++++ .|++...
T Consensus 105 ~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 105 L-PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp C-CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 4 223457899999999999999999842 1 12577888888 8887543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=106.45 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
++.+|||+|||+|..+..+++ ..|+++|+++.++..++.+. ...++. ..+...|...++..+++||+|++...
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNL-SRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH-HHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 457999999999998888874 27999999999988776544 344553 34555566666544578999997321
Q ss_pred -----ccccccC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 -----RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 -----l~h~~~d----------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++-.++ ...+|.++.++|||||.+++++.
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 1111111 14789999999999999999875
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.4e-09 Score=110.73 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..++++ +++++|+ +.++..++ +.. ...+...|+.. +++ .||+|++..+++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~-~v~~~~~d~~~-~~p--~~D~v~~~~~lh 257 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-----GSN-NLTYVGGDMFT-SIP--NADAVLLKYILH 257 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CBT-TEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc-----cCC-CcEEEeccccC-CCC--CccEEEeehhhc
Confidence 4479999999999999888753 7999999 76664332 211 23344455544 555 399999999988
Q ss_pred ccccChH--HHHHHHHHhccC---CeEEEEEEC
Q 005981 350 NWTRDDG--ILLLEVNRMLRA---GGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~--~~L~el~RvLkP---GG~lv~st~ 377 (666)
|| .+.. .+|+++.++||| ||.+++.+.
T Consensus 258 ~~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 258 NW-TDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp GS-CHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred cC-CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 88 5555 999999999999 999999864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=107.15 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-c---CCCceEEeecccC-CCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-r---g~~~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+... . .....+...|... ++..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4579999999999999998865 7999999999887776443220 1 1122344444322 2223578999997
Q ss_pred ccccccccc--Ch--HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 005981 345 SRCRINWTR--DD--GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (666)
Q Consensus 345 s~~l~h~~~--d~--~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~ 388 (666)
... .++.. .. ..+++++.++|||||.+++.....+.....+..
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 242 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKN 242 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHH
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHH
Confidence 542 33321 11 688999999999999999975433333333333
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=108.19 Aligned_cols=101 Identities=12% Similarity=0.153 Sum_probs=70.2
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC--CCCCCCeeEEEeccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L--pf~d~sFDlVv~s~~l~ 349 (666)
.+|||||||+|.++.+++++ +|+++|+++.++..++..+.........+...|...+ .+++++||+|++... .
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~-~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF-A 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS-T
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC-C
Confidence 48999999999999998862 7999999999887665433221111233444453332 245689999997543 3
Q ss_pred ccccC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++... ...++++++++|||||.|++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 33111 25899999999999999998864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=102.62 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...++ ...+...|.... +++++||+|++.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~- 188 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL-TKWGLIERVTIKVRDISEG-FDEKDVDALFLD- 188 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHH-HHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC-
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHc-ccCCccCEEEEC-
Confidence 4579999999999888777642 7999999999888776543 33444 223444455554 566789999963
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. +++..++.++.++|+|||.+++.+.
T Consensus 189 ----~-~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 189 ----V-PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp ----C-SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ----C-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 5667899999999999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-09 Score=106.20 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=71.2
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CCCC-----CCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP-----SQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lpf~-----d~sFDl 341 (666)
..+|||||||+|..+..|+.. +|+++|+++.++..++... ...++. ..+...++.. ++.. +++||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYW-REAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHH-HHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 479999999999988888752 8999999999987776443 444543 3344444433 2221 478999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|++... ..+...++.++.++|||||++++..
T Consensus 140 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 140 IFIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 997543 2445688999999999999999974
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=107.23 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH-cC----CCceEEeecccC-CCCCCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RG----APAMVAAFATRR-LPYPSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~-rg----~~~~~~~~d~e~-Lpf~d~sFDlVv 343 (666)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+... .+ ....+...|... ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4579999999999999999865 7999999999988777554331 12 223344445433 333467899999
Q ss_pred eccccccc---cc--C--hHHHHHHHHHhccCCeEEEEEE
Q 005981 344 CSRCRINW---TR--D--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 344 ~s~~l~h~---~~--d--~~~~L~el~RvLkPGG~lv~st 376 (666)
+... .++ .. . ...+++++.++|||||.+++..
T Consensus 157 ~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 8654 444 11 1 2588999999999999999874
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=102.32 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=68.8
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEecc-cc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAG-LF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~-~f 592 (666)
.+|||+|||.|.++..|++.|. +|+.+|. +.+++.+.++ |+ +.+.+...+.++ .+.+||+|.|.. .+
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDAVTMFFSTI 116 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEEEEECSSGG
T ss_pred CEEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-cCCCccEEEEcCCch
Confidence 5799999999999999999987 5666763 5777777654 43 444444433333 458999999863 33
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+. ..-+...+|.++.|+|||||.+++.
T Consensus 117 ~~~-~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 117 MYF-DEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC-CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 333 2234578999999999999999985
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=99.64 Aligned_cols=118 Identities=11% Similarity=0.172 Sum_probs=82.0
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-CC-CccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-YP-RTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-yp-~tyDliha~ 589 (666)
.|||+|||.|.++.+|++. +. +|+.+|. +.++..+.++ |+ +.+++...+.++. ++ .+||.|++.
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p~~-----~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNPDI-----NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS-----EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred eEEEEecCCCHHHHHHHHHCCCC-----CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 4999999999999999887 44 7778874 5777766654 55 4555444443332 33 899999875
Q ss_pred cccc-----cCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEE
Q 005981 590 GLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 590 ~~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..-. |...+-....+|.++.|+|||||.++|. |..+..+.+.+++....|+...
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 2111 1122222468999999999999999996 6666677777777777786543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=105.65 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCchhHHHhccC-CeEEEeC----CcchHHHHHHHHHHHcCCC-ceEEee-cccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSI----APKDVHENQIQFALERGAP-AMVAAF-ATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDi----S~~~l~~a~~~~a~~rg~~-~~~~~~-d~e~Lpf~d~sFDlVv~s~ 346 (666)
++.+|||||||+|.++..++++ +|+|+|+ ++.++.... ....+.+ ..+... |+..+ +.++||+|+|..
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd~ 156 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDI 156 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTS--CCCCCSEEEECC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccC--CcCCCCEEEECC
Confidence 4579999999999999999887 8999999 443331100 0111112 233333 44444 457899999865
Q ss_pred ccc--ccccChH---HHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRI--NWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~--h~~~d~~---~~L~el~RvLkPGG~lv~st~ 377 (666)
+.. ++..+.. .+|.++.++|||||.|++..+
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 532 2222222 478889999999999999764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-08 Score=105.02 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=75.8
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC-CCCCCCeeEEEeccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L-pf~d~sFDlVv~s~~l~h~ 351 (666)
+.+|||+|||+|.++..++.. .|+++|+|+.++..++.+ +...++...+...|+..+ +...+.||+|++....+..
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n-~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQA-ALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 579999999999999988765 799999999999888754 444566544445554332 2213449999986443221
Q ss_pred --------ccChHHHHHHHHHhccCCeEEEEEECCCCCCHH
Q 005981 352 --------TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE 384 (666)
Q Consensus 352 --------~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~ 384 (666)
..+...++.++.++|+|||.+++.+........
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~ 334 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLE 334 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHH
Confidence 122347888999999999999977643333333
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=103.09 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=93.7
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-------------------------------
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL------------------------------- 565 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl------------------------------- 565 (666)
.-.+|||+|||.|.++..|++.+. .+|+.+|. +.+++.+.++--
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF----TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE----EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc----CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 346799999999999999998863 35677763 567777654410
Q ss_pred ----c-ccccccCCCCCC-CC---CccceEEeccccccCC-CCCCHHHHHHHhhhcccCCeEEEEEeChh----------
Q 005981 566 ----I-GVMHDWCEPFDT-YP---RTYDLLHAAGLFSVES-KRCNMSTIMLEMDRMLRPGGHVYIRDSID---------- 625 (666)
Q Consensus 566 ----i-g~~~~~ce~~~~-yp---~tyDliha~~~f~~~~-~~c~~~~~l~E~dRiLRPgG~~ii~d~~~---------- 625 (666)
+ .+.+...+.... -+ .+||+|.|..++.+.. +.-+...+|.++.|+|||||++++.+...
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 3 333322222222 23 7999999998877432 11245689999999999999999976221
Q ss_pred ------HHHHHHHHHHhcCcEEEEEeccCC---C----CCceEEEEEEeC
Q 005981 626 ------VMDELQEIGKAMGWHVTLRETAEG---P----HASYRILTADKR 662 (666)
Q Consensus 626 ------~~~~~~~i~~~l~W~~~~~~~~~~---~----~~~e~~l~~~k~ 662 (666)
..+.+.+++....+++........ . ....-+++|+|.
T Consensus 212 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 212 FSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp EECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 245888999999998765433211 0 123456788874
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-08 Score=91.09 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=84.5
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--ccccc-ccCCCCCCCC-Cc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMH-DWCEPFDTYP-RT 582 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~-~~ce~~~~yp-~t 582 (666)
+....+ .+|||+|||.|.++.+|++.+. +|+.+|. +.+++.+.++ |+ +.+.+ |+.+ .+| .+
T Consensus 31 ~~~~~~--~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~ 100 (183)
T 2yxd_A 31 LNLNKD--DVVVDVGCGSGGMTVEIAKRCK-----FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLE 100 (183)
T ss_dssp HCCCTT--CEEEEESCCCSHHHHHHHTTSS-----EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCC
T ss_pred cCCCCC--CEEEEeCCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCC
Confidence 444433 3699999999999999998655 5666663 5667666655 43 33333 3322 234 69
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcCcEEEEE
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
||+|.+..+ ..+..++.++.|+ |||.+++.+ ..+...++.+.++...|++...
T Consensus 101 ~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 101 FNKAFIGGT-------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp CSEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 999999866 4668999999999 999999987 5667888999999999988765
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=6e-08 Score=97.92 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=86.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-ccc-----ccccC-CCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGV-----MHDWC-EPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~-----~~~~c-e~~~~yp~tyDliha~~~ 591 (666)
..|||+|||+|+|+.+|+++|+. .|+.+| +++|+..+..+.- +.. ....+ +.+.. .-||.+.++.+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~----~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK----LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS----EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC----EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 35999999999999999999741 677777 4788888766432 111 11111 22322 12455555555
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe-------------------Ch---hHHHHHHHHHHhcCcEEEEEeccC-
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-------------------SI---DVMDELQEIGKAMGWHVTLRETAE- 648 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-------------------~~---~~~~~~~~i~~~l~W~~~~~~~~~- 648 (666)
|... ..+|.|+.|+|||||++++.- .. ...+++.++++...|++...+...
T Consensus 113 ~~~l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 113 FISL------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp SSCG------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred hhhH------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence 5433 689999999999999999861 11 135678888999999986654322
Q ss_pred -CC-CCceEEEEEEeC
Q 005981 649 -GP-HASYRILTADKR 662 (666)
Q Consensus 649 -~~-~~~e~~l~~~k~ 662 (666)
++ ..-|.++.++|.
T Consensus 187 ~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 187 KGGAGNVEFLVHLLKD 202 (232)
T ss_dssp CBTTTBCCEEEEEEES
T ss_pred CCCCCCHHHHHHHhhc
Confidence 22 345778888773
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=101.03 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=101.8
Q ss_pred hHhHHHHHHHHHHhccc-CCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc--cc
Q 005981 498 SKYWNEIIESYVRALHW-KKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IG 567 (666)
Q Consensus 498 ~~~w~~~v~~Y~~~l~~-~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig 567 (666)
.+.|.+++-.-...+.. ....-.+|||+|||.|..+..|+.. +. .|+.+|. +.++.++.++ |+ +.
T Consensus 59 ~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~l~~v~ 133 (249)
T 3g89_A 59 EEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPEL-----ELVLVDATRKKVAFVERAIEVLGLKGAR 133 (249)
T ss_dssp HHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTC-----EEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHHHHHhCCCceE
Confidence 34565555333232221 1122356999999999999888865 33 5666663 5666665543 65 66
Q ss_pred cccccCCCCCC---CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe---ChhHHHHHHHHHHhcCcEE
Q 005981 568 VMHDWCEPFDT---YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---SIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 568 ~~~~~ce~~~~---yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d---~~~~~~~~~~i~~~l~W~~ 641 (666)
+++...|.+.. +..+||+|.|..+ .++..++.++.|+|||||++++-. ..+.+..++..++.+.|+.
T Consensus 134 ~~~~d~~~~~~~~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~ 206 (249)
T 3g89_A 134 ALWGRAEVLAREAGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRL 206 (249)
T ss_dssp EEECCHHHHTTSTTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEE
T ss_pred EEECcHHHhhcccccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeE
Confidence 67766666543 3489999998742 356899999999999999999864 4566777888888999987
Q ss_pred EEEeccCCC--CCceEEEEEEeCCCC
Q 005981 642 TLRETAEGP--HASYRILTADKRLLH 665 (666)
Q Consensus 642 ~~~~~~~~~--~~~e~~l~~~k~~~~ 665 (666)
.....-.-+ .....+++.+|.=.+
T Consensus 207 ~~~~~~~~p~~~~~R~l~~~~k~~~t 232 (249)
T 3g89_A 207 GEVLALQLPLSGEARHLVVLEKTAPT 232 (249)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECSCC
T ss_pred EEEEEeeCCCCCCcEEEEEEEeCCCC
Confidence 543211112 234456667775443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.8e-08 Score=105.85 Aligned_cols=107 Identities=9% Similarity=0.026 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC-CCC---CCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPY---PSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~-Lpf---~d~sFDlVv~ 344 (666)
+.+|||+|||+|.++..++.. +|+++|+++.++..++. .++..++. ..+...|+.. ++. ...+||+|++
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~-N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLA-HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHH-HHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 478999999999999998874 79999999999988875 44455653 3445555433 221 2458999998
Q ss_pred ccccc----ccccC----hHHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 345 SRCRI----NWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 345 s~~l~----h~~~d----~~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
..... ....+ ...++.++.++|+|||.+++++.+....
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~ 337 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT 337 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC
Confidence 54332 11122 2357788899999999999997544333
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=105.20 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=67.6
Q ss_pred eeeEeeccccchHHHH----HHhhCCCceEEEEeeccC-CCCChhHHHhc-----cc--ccc--ccccCCCCC-----CC
Q 005981 519 LRNVLDMRAGFGGFAA----ALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-----GL--IGV--MHDWCEPFD-----TY 579 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa----~L~~~~~~vwvmnv~~~~-~~~~l~~~~er-----Gl--ig~--~~~~ce~~~-----~y 579 (666)
-..|||+|||+|.++. .|+.++..+ ...++.+| ++.|++.+.++ |+ +.+ .+.-.|.+. .+
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 3479999999998665 344432122 22447777 46889888776 33 111 121222222 13
Q ss_pred -CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 580 -PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 -p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.+||+|+|..++.+..+ ...+|.||.|+|||||+++|.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEE
Confidence 389999999999988765 479999999999999999996
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=103.26 Aligned_cols=103 Identities=11% Similarity=0.063 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCC----CCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY----PSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf----~d~sFDlVv 343 (666)
++.+|||+|||+|..+..+++ .+|+++|+++.++..++. .+...++. ..+...|...++. ..++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKS-NINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHH-HHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 457999999999999888774 379999999998887764 34445553 3444455555543 257899999
Q ss_pred ecccccc-----------------cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRIN-----------------WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h-----------------~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...... .......+|.++.++|||||.+++++.
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 7522111 113446899999999999999999975
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-08 Score=95.57 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||+|||+|.++..++.. +|+|+|+++.++..++.+.. ...+...|+..++ ++||+|+++..+++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 4579999999999999888765 69999999988866653322 3345555666664 68999999887666
Q ss_pred cccC-hHHHHHHHHHhccCCeEEEE
Q 005981 351 WTRD-DGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 351 ~~~d-~~~~L~el~RvLkPGG~lv~ 374 (666)
+... ...+++++.++| |+.+++
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp -----CHHHHHHHHHHE--EEEEEE
T ss_pred ccCchhHHHHHHHHHhc--CcEEEE
Confidence 6332 247899999998 554433
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-08 Score=100.28 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=73.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc---cccccccCCCCCCCCCccceEEeccccccC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
.+|||+|||.|.++.+|++.|.. +|+.+|. +.+++.+.++.- +.+.+...+.++.-+.+||+|.+..++.+.
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEHGAS----YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CEEEEEcCcCCHHHHHHHHCCCC----eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 46999999999999999998751 4555553 577888877753 344444444444224899999999988877
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
. +...+|.++.|+|||||++++.+
T Consensus 121 ~---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 121 E---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 5 45799999999999999999974
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.71 E-value=9.6e-09 Score=103.82 Aligned_cols=101 Identities=11% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCC---CCC---CCCeeE
Q 005981 274 HIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL---PYP---SQAFDL 341 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~L---pf~---d~sFDl 341 (666)
...+|||+|||+|.++..++. .+|+|+|+++.++..++.+. ...++. ..+...|+... +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 457899999999988877764 38999999999998887544 445554 34444454431 344 268999
Q ss_pred EEeccccccccc--------------ChHHHHHHHHHhccCCeEEEEE
Q 005981 342 IHCSRCRINWTR--------------DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 342 Vv~s~~l~h~~~--------------d~~~~L~el~RvLkPGG~lv~s 375 (666)
|+|+..+++... ....++.++.|+|||||.+.+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 998865443320 1124577899999999998665
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-08 Score=99.54 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=80.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccc-cccCCCCCC---CCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVM-HDWCEPFDT---YPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~-~~~ce~~~~---yp~tyDliha~ 589 (666)
..|||+|||.|.++.+|++.+-. .+|+.+|. +.+++.+.++ |+ +.+. .|..+.+.. ...+||+|.++
T Consensus 32 ~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 32 TRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp EEEEEEESSBCHHHHHHHHHCTT---EEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CEEEEecCCHhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 46999999999999999998311 25555653 4556555443 32 2233 333332221 12799999996
Q ss_pred cccccCCCC-------------CC----------HHHHHHHhhhcccCCeE-EEEEeChhHHHHHHHHHH--hcCcEEEE
Q 005981 590 GLFSVESKR-------------CN----------MSTIMLEMDRMLRPGGH-VYIRDSIDVMDELQEIGK--AMGWHVTL 643 (666)
Q Consensus 590 ~~f~~~~~~-------------c~----------~~~~l~E~dRiLRPgG~-~ii~d~~~~~~~~~~i~~--~l~W~~~~ 643 (666)
--|...... .. +..++.++.|+|||||+ +++.-.......+.+++. .-.|....
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEE
Confidence 544321110 00 16889999999999999 777655666778888888 77775432
Q ss_pred EeccCCCCCceEEEEEEeC
Q 005981 644 RETAEGPHASYRILTADKR 662 (666)
Q Consensus 644 ~~~~~~~~~~e~~l~~~k~ 662 (666)
...+ ..+.+++++++|.
T Consensus 189 ~~~~--~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 189 KVKD--LRGIDRVIAVTRE 205 (215)
T ss_dssp EEEC--TTSCEEEEEEEEC
T ss_pred EEEe--cCCCEEEEEEEEc
Confidence 2221 2245889998874
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.9e-09 Score=100.50 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=70.5
Q ss_pred eeEeeccccchHH-HHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGF-AAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggf-aa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.+|||+|||.|.+ ...++..|. +|+.+|. +.+++.+.++ |. +.+.+...+.++.-+.+||+|.|.+++
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY-----KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC-----EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC-----EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 4699999999998 556666676 5666663 5677766654 32 444544444444223899999999888
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+.. .-+...+|.++.|+|||||++++.+
T Consensus 100 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 100 FHMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 7763 2346799999999999999999974
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=101.93 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=89.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCC-CCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTY-PRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~y-p~tyDliha~~~f 592 (666)
.+|||+|||.|.++.++++.|. +|+.+|. +.+++.+.++ |+ +.+.+.-.+. .+ +.+||+|.++.++
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~-----~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~--~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG-----KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA--ALPFGPFDLLVANLYA 194 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH--HGGGCCEEEEEEECCH
T ss_pred CEEEEecCCCcHHHHHHHHhCC-----eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh--cCcCCCCCEEEECCcH
Confidence 3699999999999999999976 5666663 5677766664 44 4444322211 13 3789999997543
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
.. +..++.++.|+|||||++++++. ....+.+.+++++..+++.....++ ....|+++|
T Consensus 195 ~~------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~----~W~~l~~~k 254 (254)
T 2nxc_A 195 EL------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEG----EWVLLAYGR 254 (254)
T ss_dssp HH------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET----TEEEEEEEC
T ss_pred HH------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccC----CeEEEEEEC
Confidence 22 46899999999999999999864 4467888999999999986654433 356666665
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-08 Score=102.92 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHH-----------cCCCceEEeecccC-CCCCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-----------RGAPAMVAAFATRR-LPYPSQA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~-----------rg~~~~~~~~d~e~-Lpf~d~s 338 (666)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+ .. ......+...|... ++. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 4579999999999999998865 8999999999887776544 11 11122334444322 222 578
Q ss_pred eeEEEeccccccccc--C--hHHHHHHHHHhccCCeEEEEEEC
Q 005981 339 FDLIHCSRCRINWTR--D--DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 339 FDlVv~s~~l~h~~~--d--~~~~L~el~RvLkPGG~lv~st~ 377 (666)
||+|++... .++.. . ...+++++.++|+|||.+++...
T Consensus 153 fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 999997544 33321 1 25789999999999999999753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-08 Score=105.64 Aligned_cols=106 Identities=11% Similarity=-0.018 Sum_probs=76.1
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccc-cccccCCCCC-----CC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIG-VMHDWCEPFD-----TY 579 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig-~~~~~ce~~~-----~y 579 (666)
.....+++..+ ..|||+|||+|.++..|+++|. .|+.+| ++.+++.+.++---. +..++ +.+. ..
T Consensus 36 ~il~~l~l~~g--~~VLDlGcGtG~~a~~La~~g~-----~V~gvD~S~~ml~~Ar~~~~~~~v~~~~-~~~~~~~~~~~ 107 (261)
T 3iv6_A 36 NDIFLENIVPG--STVAVIGASTRFLIEKALERGA-----SVTVFDFSQRMCDDLAEALADRCVTIDL-LDITAEIPKEL 107 (261)
T ss_dssp HHHHTTTCCTT--CEEEEECTTCHHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTSSSCCEEEE-CCTTSCCCGGG
T ss_pred HHHHhcCCCCc--CEEEEEeCcchHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhccceeee-eeccccccccc
Confidence 33444555544 3699999999999999999987 566677 468999888764211 22222 2222 12
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.+||+|.|+.++.+... -+...+|.+|.|+| |||.++++-
T Consensus 108 ~~~fD~Vv~~~~l~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTT-EEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp TTCCSEEEEESCGGGSCH-HHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCCccEEEEhhhhHhCCH-HHHHHHHHHHHHhC-cCcEEEEEe
Confidence 479999999988887643 24568999999999 999999983
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-08 Score=109.69 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=86.1
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc---------c-----ccccccccCCCCC----
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR---------G-----LIGVMHDWCEPFD---- 577 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er---------G-----lig~~~~~ce~~~---- 577 (666)
..|||+|||.|.++..|++. +. .|+.+|. +.+++.+.++ | -+.+.+...+.+.
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG-----KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC-----EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 46999999999999999875 33 5666663 6788888776 5 2445555544441
Q ss_pred -CCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-----------------------hHHHHHHH
Q 005981 578 -TYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------------------DVMDELQE 632 (666)
Q Consensus 578 -~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-----------------------~~~~~~~~ 632 (666)
.+| .+||+|++..++.+..+ ...+|.|+.|+|||||++++.|.. -..+.+.+
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRR 236 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHH
T ss_pred CCCCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHH
Confidence 344 89999999999988765 479999999999999999997521 11377888
Q ss_pred HHHhcCcEE
Q 005981 633 IGKAMGWHV 641 (666)
Q Consensus 633 i~~~l~W~~ 641 (666)
++++-.++.
T Consensus 237 ll~~aGF~~ 245 (383)
T 4fsd_A 237 LVAEAGFRD 245 (383)
T ss_dssp HHHHTTCCC
T ss_pred HHHHCCCce
Confidence 899888864
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.2e-09 Score=108.73 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=69.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cc-----------cccccC------CCCC-CC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IG-----------VMHDWC------EPFD-TY 579 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig-----------~~~~~c------e~~~-~y 579 (666)
..|||+|||.|+....++..+. -+|+.+| ++.+++.|.+|-- .+ .....+ |.+. .+
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~----~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEI----ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CeEEEEecCCcHhHHHHHhcCC----CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 4699999999987766665542 1678888 4789988887621 11 112222 2221 23
Q ss_pred C-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 580 P-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 580 p-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
| .+||+|-|..++.+.-+.-+...+|.|+.|+|||||+|+++..
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4 8999999987765432222567999999999999999999854
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=101.26 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=70.5
Q ss_pred CCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC-CC-C-----CCCCee
Q 005981 275 IRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-Y-----PSQAFD 340 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~-Lp-f-----~d~sFD 340 (666)
..+|||||||+|..+..++. .+|+++|+++.++..++..+ ...++. ..+...+... ++ + ++++||
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 46899999999988877764 38999999999988777544 344543 2333344322 23 1 157899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|++... ..+...++.++.++|||||++++..
T Consensus 159 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9997532 2456789999999999999999874
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=95.61 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=70.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc-ccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG-LIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG-lig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||.|.++..| ++. +|+.+|. +.+++.+.++. -+.+.+...+.++.-+++||+|.+.+++.+..
T Consensus 38 ~~vLdiG~G~G~~~~~l---~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL---PYP----QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp SEEEEETCTTCHHHHHC---CCS----EEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CeEEEECCCCCHhHHhC---CCC----eEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 47999999999999998 431 4566663 57888887773 24444444444442237999999999888875
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+...+|.|+.|+|||||.+++.+
T Consensus 110 --~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 --DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCCEEEEEe
Confidence 45799999999999999999985
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.8e-08 Score=95.11 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=83.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCC-CCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEP-FDTYPR 581 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~-~~~yp~ 581 (666)
.+.+..+ ..|||+|||.|.++.+|++.+. .|+.+|. +.+++.+.++ |+ +.+.+...+. +.. ..
T Consensus 50 ~l~~~~~--~~vLDlGcG~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~ 121 (204)
T 3njr_A 50 ALAPRRG--ELLWDIGGGSGSVSVEWCLAGG-----RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-LP 121 (204)
T ss_dssp HHCCCTT--CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-SC
T ss_pred hcCCCCC--CEEEEecCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-CC
Confidence 3445444 4599999999999999999876 5566663 5677766654 44 4444444333 222 25
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcCcEEEE
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~W~~~~ 643 (666)
.||+|.+...+ +.+ ++.++.|+|||||.+++.. ..+...++.++++...+++..
T Consensus 122 ~~D~v~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 122 LPEAVFIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp CCSEEEECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCEEEECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence 79999987522 456 9999999999999999985 466788888888888887654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=98.02 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=71.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc-----ccccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG-----LIGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG-----lig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
.+|||+|||.|.++..|++.+. +|+.+|. +.+++.+.++. -+.+.+.-.+.++.-+.+||+|.+..++.
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF-----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CeEEEEeccCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 4699999999999999999975 5666663 56777766652 24444443333332237999999998744
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
+.. .-+...+|.++.|+|||||.+++.+..
T Consensus 115 ~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 115 HFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 332 123468999999999999999998653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-08 Score=99.17 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc----cCCCCCC--CCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT----RRLPYPS--QAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~----e~Lpf~d--~sFDl 341 (666)
..+|||||||+|..+..++.. +|+++|+++.++..++..+. ..+.. ..+...+. ..++..+ ++||+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 368999999999998888754 79999999998887765443 33443 23333332 2233333 78999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|++... ..+...++.++.++|||||++++..
T Consensus 152 V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 152 IFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEECSC----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 997543 2445789999999999999999974
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.9e-08 Score=105.36 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=93.1
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhc----cc---cccc-cccCCCCCCCCCccceEE
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~tyDlih 587 (666)
..+.|||+|||.|.++.+|+++ +. .++.+|.+.+++.+.++ |+ +.+. +|..+.-.++|.+||+|+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-----~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~ 253 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV-----EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVW 253 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC-----EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-----EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEE
Confidence 4578999999999999999885 33 34444545667666654 43 4444 333221113678999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh------------------------------HHHHHHHHHHhc
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------------------------VMDELQEIGKAM 637 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~------------------------------~~~~~~~i~~~l 637 (666)
+..++.++.+. +...+|.++.|+|||||+++|.|..- ..++++++++.-
T Consensus 254 ~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A 332 (363)
T 3dp7_A 254 MSQFLDCFSEE-EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA 332 (363)
T ss_dssp EESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT
T ss_pred EechhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc
Confidence 99988877643 33588999999999999999975210 245677778888
Q ss_pred CcEEEEEeccCCCCCceEEEEEEeC
Q 005981 638 GWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 638 ~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.++........+ ....++.+.|.
T Consensus 333 Gf~~v~~~~~~g--~~~svi~~~~~ 355 (363)
T 3dp7_A 333 GLEVEEIQDNIG--LGHSILQCRLK 355 (363)
T ss_dssp TEEESCCCCCBT--TTBEEEEEEEC
T ss_pred CCeEEEEEeCCC--CCceEEEEeec
Confidence 887654332222 34678877775
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-08 Score=96.54 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=84.0
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-CC-CccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-YP-RTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-yp-~tyDliha 588 (666)
..|||+|||.|.++.+|++. +. +|+.+|. +.++..+.++ |+ +.+++...+.++. ++ .+||+|++
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDI-----NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL 117 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CeEEEEccCcCHHHHHHHHHCCCC-----CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence 35999999999999999887 34 6667763 5677666553 44 4455544444432 43 79999998
Q ss_pred cccccc-----CCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEEe
Q 005981 589 AGLFSV-----ESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 589 ~~~f~~-----~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~~ 645 (666)
...... ...+-....+|.++.|+|||||.+++. |..+..+.+.++++...|+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 733211 111112368999999999999999996 565667788888888888875543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-08 Score=99.90 Aligned_cols=97 Identities=9% Similarity=0.140 Sum_probs=69.7
Q ss_pred CCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC-CC-------------
Q 005981 275 IRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LP------------- 333 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~-Lp------------- 333 (666)
..+|||||||+|.++..++. .+|+++|+++.++..++.... ..+... .+...+... ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK-ENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 46899999999998887764 389999999998887765443 344432 333333222 11
Q ss_pred -CCC--CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 -YPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 -f~d--~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|++ ++||+|++... ..+...++.++.++|||||.+++..
T Consensus 140 ~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999997643 2445688999999999999999975
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.66 E-value=9.5e-08 Score=98.27 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHH----HcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL----ERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~----~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+++|||||||+|.++..+++. +|+++|+++.++..++..+.. .......+...|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 4579999999999999888764 899999999887665432211 01112234444544433 7899999752
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.++..+++++.++|||||.+++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 355668999999999999999974
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-07 Score=99.27 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccC-CCC-CCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRR-LPY-PSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~-Lpf-~d~sFDlVv~s~ 346 (666)
.+.+|||+| |+|.++..++.. +|+++|+++.++..++.+ +...++ ...+...|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~-~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKA-ANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 457999999 999988877643 799999999999887754 444455 34455556666 664 357899999876
Q ss_pred cccccccChHHHHHHHHHhccCCe-EEEEEEC
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGG-YFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG-~lv~st~ 377 (666)
.+... . ...++.++.++||||| .++++..
T Consensus 250 p~~~~-~-~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLE-A-IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHH-H-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchH-H-HHHHHHHHHHHcccCCeEEEEEEe
Confidence 53333 2 5789999999999999 4466654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-08 Score=100.51 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=80.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-ccccc-ccCCCCCCC-CCccceEEeccccccC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMH-DWCEPFDTY-PRTYDLLHAAGLFSVE 595 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~-~~ce~~~~y-p~tyDliha~~~f~~~ 595 (666)
..|||+|||.|.++.+|++.+. .|+.+|. +.+++.+.++.- +.+.+ |+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA-----RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 3599999999999999999976 5666763 678888888733 44443 443555432 4799999987
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
-+...+|.++.|+|||||.++..........+.+.+....++...
T Consensus 119 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 119 ---RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp ---SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 134588999999999999999544434455677777777766543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=99.90 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=93.8
Q ss_pred CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----cc---cccc-cccCCCCCCCCCccceE
Q 005981 515 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 515 ~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~tyDli 586 (666)
.+.....|||+|||.|.++.+|++..-++ .++.+|.+.+++.+.++ |+ +.+. +|.. ..+|..||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~p~~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDL---SGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF---DPLPAGAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---SCCCCSCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCC---eEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC---CCCCCCCcEE
Confidence 34556889999999999999998851111 23333444566555543 54 4444 4442 3455689999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------------------hHHHHHHHHHHhcCcEEEEE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
.+..++.++.+. ....+|.++.|+|||||+++|.|.. ...++++++++.-.++....
T Consensus 240 ~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 240 VLSAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred EEehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 999999887653 2368999999999999999997641 11466888889889987654
Q ss_pred eccCCCCCceEEEEEEe
Q 005981 645 ETAEGPHASYRILTADK 661 (666)
Q Consensus 645 ~~~~~~~~~e~~l~~~k 661 (666)
..-. . ..|+.|+|
T Consensus 319 ~~~~---~-~~vie~r~ 331 (332)
T 3i53_A 319 HPIS---Y-VSIVEMTA 331 (332)
T ss_dssp EECS---S-SEEEEEEE
T ss_pred EECC---C-cEEEEEee
Confidence 4322 1 67888876
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=91.43 Aligned_cols=96 Identities=16% Similarity=0.057 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||+|||+|.++..++.. +|+|+|+++.++..++.+ +...++...+...|...++ ++||+|+++..++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 4579999999999999888765 699999999988777643 3333444455555666654 48999998876555
Q ss_pred ccc-ChHHHHHHHHHhccCCeEEEEE
Q 005981 351 WTR-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 351 ~~~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.. ....++.++.++| ||.+++.
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEE
Confidence 532 2347889999998 6655443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-08 Score=97.69 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCC-C-CC--C--CCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-P-YP--S--QAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~L-p-f~--d--~sFDl 341 (666)
..+|||||||+|.++..++.. +|+++|+++.++..++... ...+.. ..+...++... + +. . ++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 479999999999999888763 8999999999988776544 344542 23333343221 1 11 1 68999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|++... ..+...++.++.++|||||.+++..
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 997543 2445689999999999999999974
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-08 Score=99.37 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=78.5
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----------cc--cccccccCCC-CCC-C-CC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----------GL--IGVMHDWCEP-FDT-Y-PR 581 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----------Gl--ig~~~~~ce~-~~~-y-p~ 581 (666)
..|||+|||+|.++.+|++. +. +|+.+|. +.++..|.++ |+ |.+++...+. ++. + +.
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~-----~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDT-----LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTS-----EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred CeEEEEccCCcHHHHHHHHHCCCC-----eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 45999999999999999987 33 6777773 5777766532 44 4555555443 321 3 38
Q ss_pred ccceEEeccccc-----cCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcC-cEEE
Q 005981 582 TYDLLHAAGLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMG-WHVT 642 (666)
Q Consensus 582 tyDliha~~~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~-W~~~ 642 (666)
+||+|++...-- |.+.|...+.+|.++.|+|||||.|+|. |..+..+.+.+.+.... |+..
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 999998642110 1222333468999999999999999985 77777777777766654 5443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=102.93 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=76.7
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC-C--ceEEeecccCCC--C--CCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-P--AMVAAFATRRLP--Y--PSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~-~--~~~~~~d~e~Lp--f--~d~sFDlVv~ 344 (666)
+.+|||+|||+|.++..++.. +|+++|+++.++..++. .+...++ . ..+...|+..+. + ...+||+|++
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 478999999999999988865 79999999999988765 4444566 3 344555543331 1 1468999998
Q ss_pred ccccc--------ccccChHHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 345 SRCRI--------NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 345 s~~l~--------h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
..... +.......++.++.++|+|||.+++++.+....
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 345 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT 345 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC
Confidence 64321 111344588999999999999999997654444
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-08 Score=102.87 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=79.5
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhcc------------------ccc------------
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG------------------LIG------------ 567 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erG------------------lig------------ 567 (666)
..|||+|||+|.++..++.. +. +|+.+| ++.+++.+.++- +.|
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHFE-----DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCS-----EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CeEEEECCCcChHHHHhhccCCC-----eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 56999999999955444443 44 677777 467777665520 111
Q ss_pred ------cc-cccCCCCC----CCC-CccceEEeccccccCCCC-CCHHHHHHHhhhcccCCeEEEEEeCh----------
Q 005981 568 ------VM-HDWCEPFD----TYP-RTYDLLHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRDSI---------- 624 (666)
Q Consensus 568 ------~~-~~~ce~~~----~yp-~tyDliha~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~ii~d~~---------- 624 (666)
+. .|..+..+ .+| .+||+|.|..+|.+.... .+...+|.|+.|+|||||+++|.+..
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~ 227 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 227 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCe
Confidence 11 13322122 233 679999999888774321 24579999999999999999996311
Q ss_pred ------hHHHHHHHHHHhcCcEEEEE
Q 005981 625 ------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 625 ------~~~~~~~~i~~~l~W~~~~~ 644 (666)
-..+.++++++.-.+++...
T Consensus 228 ~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 228 RLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred eeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 13678888999888886543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-08 Score=99.94 Aligned_cols=132 Identities=14% Similarity=0.293 Sum_probs=91.2
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc--cccc-cccCCCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVM-HDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~-~~~ce~~~~yp~tyDliha~ 589 (666)
.+|||+|||.|.++.+|++. +. +|+.+|. +.++.++.++ |+ +.+. .|+.+.++ +.+||+|.++
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~-----~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~n 183 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC-----EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSN 183 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS-----EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEEC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEEC
Confidence 46999999999999999865 33 5677774 5777776654 44 4444 34433322 4789999997
Q ss_pred ccc-------------ccCCCC---------CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEE-EEEec
Q 005981 590 GLF-------------SVESKR---------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV-TLRET 646 (666)
Q Consensus 590 ~~f-------------~~~~~~---------c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~-~~~~~ 646 (666)
--+ .+.... ..+..++.++.|+|||||++++.......+.++++++...|+. .....
T Consensus 184 pPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d 263 (276)
T 2b3t_A 184 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD 263 (276)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC
T ss_pred CCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec
Confidence 332 222111 1246889999999999999999877777788888888888863 23222
Q ss_pred cCCCCCceEEEEEEe
Q 005981 647 AEGPHASYRILTADK 661 (666)
Q Consensus 647 ~~~~~~~e~~l~~~k 661 (666)
-.+.+++++++|
T Consensus 264 ---~~g~~r~~~~~~ 275 (276)
T 2b3t_A 264 ---YGDNERVTLGRY 275 (276)
T ss_dssp ---TTSSEEEEEEEC
T ss_pred ---CCCCCcEEEEEE
Confidence 234788888875
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=97.64 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=92.0
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhc----cc---cccc-cccCCCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~tyDliha~ 589 (666)
.+|||+|||.|.++.+|+++ +. .++.+|.+.+++.+.++ |+ +.+. +|..+ .+|..||+|.+.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~-----~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA-----RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIYLLS 240 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC-----EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEEEEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC-----EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEEEEc
Confidence 78999999999999999887 33 34444445677766554 32 4444 44433 467889999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-------------h------------HHHHHHHHHHhcCcEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------------D------------VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-------------~------------~~~~~~~i~~~l~W~~~~~ 644 (666)
.++.++.+. ....+|.++.|+|||||+++|.|.. + ..+++++++++-.++....
T Consensus 241 ~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 319 (334)
T 2ip2_A 241 RIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERI 319 (334)
T ss_dssp SCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEE
Confidence 998876542 2359999999999999999997531 0 1456778888888886544
Q ss_pred eccCCCCCceEEEEEEe
Q 005981 645 ETAEGPHASYRILTADK 661 (666)
Q Consensus 645 ~~~~~~~~~e~~l~~~k 661 (666)
..-. ....++.++|
T Consensus 320 ~~~~---~~~~~i~~~~ 333 (334)
T 2ip2_A 320 VDLP---METRMIVAAR 333 (334)
T ss_dssp EEET---TTEEEEEEEE
T ss_pred EECC---CCCEEEEEEe
Confidence 3222 2467888887
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.9e-09 Score=107.36 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=68.6
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhcc--------------------------------
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDRG-------------------------------- 564 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~erG-------------------------------- 564 (666)
..|||+|||.|.++..|+++ +. .|+.+|- +.+++.|.++-
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~~~-----~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWGPS-----RMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTCCS-----EEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCC-----EEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 46999999999999999987 44 5666663 56777776651
Q ss_pred --------------------------------ccccc-cccCCCC----CCCCCccceEEeccccccCC---CCCCHHHH
Q 005981 565 --------------------------------LIGVM-HDWCEPF----DTYPRTYDLLHAAGLFSVES---KRCNMSTI 604 (666)
Q Consensus 565 --------------------------------lig~~-~~~ce~~----~~yp~tyDliha~~~f~~~~---~~c~~~~~ 604 (666)
-+.+. .|+.+.- ...+.+||+|.|..++.+.+ ....+..+
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 12222 2222111 11348999999998875443 33456799
Q ss_pred HHHhhhcccCCeEEEEE
Q 005981 605 MLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 605 l~E~dRiLRPgG~~ii~ 621 (666)
+.++.|+|||||++||.
T Consensus 203 l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhCCCcEEEEe
Confidence 99999999999999996
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-09 Score=104.37 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=67.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-----cccc-cccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVM-HDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-----ig~~-~~~ce~~~~yp-~tyDliha~~~ 591 (666)
..|||+|||.|.++.+|++.+. -+|+.+| ++.+++.+.++.- +-++ .+|-+-...+| .+||.|..+.+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~----~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI----DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE----EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEECCCccHHHHHHHHhCC----cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 3599999999999999998731 2555666 3678888776532 3333 23322233455 89999987655
Q ss_pred cccCC--CCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVES--KRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~--~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+... +.-+.+.++.|+.|+|||||.|++-
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 44332 2223568999999999999999985
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-08 Score=102.49 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=85.9
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp 580 (666)
.++++..+ ..|||+|||.|++++.++.+ |+ .|+.+|. +.+++.|.++ |+ +.+.+.-...++ +
T Consensus 116 ~la~l~~g--~rVLDIGcG~G~~ta~~lA~~~ga-----~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d 186 (298)
T 3fpf_A 116 ALGRFRRG--ERAVFIGGGPLPLTGILLSHVYGM-----RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--G 186 (298)
T ss_dssp HHTTCCTT--CEEEEECCCSSCHHHHHHHHTTCC-----EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--G
T ss_pred HHcCCCCc--CEEEEECCCccHHHHHHHHHccCC-----EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--C
Confidence 34556655 35999999999988665433 65 5666663 5777777665 66 444443333332 3
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHH----HHHHHHHhcCcEEEEEeccCCCCCceEE
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMD----ELQEIGKAMGWHVTLRETAEGPHASYRI 656 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~----~~~~i~~~l~W~~~~~~~~~~~~~~e~~ 656 (666)
++||+|.+..+ .-+.+.++.|+.|+|||||.+++++...... .+.+ ...-.|+.....+-.+ .....|
T Consensus 187 ~~FDvV~~~a~------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~-~v~N~v 258 (298)
T 3fpf_A 187 LEFDVLMVAAL------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSG-KVNNTS 258 (298)
T ss_dssp CCCSEEEECTT------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCT-TCCCEE
T ss_pred CCcCEEEECCC------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCC-CcCcEE
Confidence 89999997643 1245799999999999999999997533211 1111 1222777766655333 234567
Q ss_pred EEEEe
Q 005981 657 LTADK 661 (666)
Q Consensus 657 l~~~k 661 (666)
.+++|
T Consensus 259 v~a~k 263 (298)
T 3fpf_A 259 VLVFK 263 (298)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77887
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-08 Score=106.66 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
..+|||||||+|.++..++++ +++++|+ +.++..+ ++. ....+...|+.. +++ +||+|+++.++++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNL-----TGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHD 263 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSC-----CCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhc-----ccC-CCcEEEeCccCC-CCC--CceEEEEcccccC
Confidence 478999999999999888754 6889998 5555322 211 123344455555 555 4999999999888
Q ss_pred cccChH--HHHHHHHHhccC---CeEEEEEEC
Q 005981 351 WTRDDG--ILLLEVNRMLRA---GGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~--~~L~el~RvLkP---GG~lv~st~ 377 (666)
| ++.. .+|+++.++||| ||.+++.+.
T Consensus 264 ~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 264 W-NDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp S-CHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 8 5655 999999999999 999999864
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.5e-08 Score=104.41 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=72.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----cc---cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
..|||+|||+|.++..|++.|.. .|+.+|...++..+.++ |+ |.+++...+.+. +|..||+|+|..+.
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~~----~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGAR----KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWMG 139 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCS----EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCCB
T ss_pred CEEEEeccCcCHHHHHHHhcCCC----EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcChh
Confidence 46999999999999999999751 56666644677666543 44 566666655554 46899999997544
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
......-.++.++.+++|+|||||.+|+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 44444445678999999999999999885
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=98.98 Aligned_cols=135 Identities=14% Similarity=0.195 Sum_probs=92.8
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----cc---cccc-cccCCCCCCCCCccceEEecc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~tyDliha~~ 590 (666)
...|||+|||.|.++.+|++..-.+ .++-+|.+.+++.+.++ |+ +.+. +|..+.-...|..||+|.+..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQL---TGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTC---EEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCC---eEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence 6789999999999999998862111 33334444566655543 54 4343 333222111467899999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---------------------------hHHHHHHHHHHhcCcEEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------------DVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---------------------------~~~~~~~~i~~~l~W~~~~ 643 (666)
++.++.+. ....+|.++.|+|||||+++|.|.. ...+.+++++++-.+++..
T Consensus 257 vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 257 CLHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp CGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 99887642 2369999999999999999997520 0145678888888998775
Q ss_pred EeccCCCCCceEEEEEEeC
Q 005981 644 RETAEGPHASYRILTADKR 662 (666)
Q Consensus 644 ~~~~~~~~~~e~~l~~~k~ 662 (666)
... +...+++++|+
T Consensus 336 ~~~-----g~~~l~~a~kp 349 (352)
T 3mcz_A 336 RSI-----GRYTLLIGQRS 349 (352)
T ss_dssp EEE-----TTEEEEEEECC
T ss_pred ecc-----CceEEEEEecC
Confidence 322 35789999985
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.62 E-value=6e-08 Score=100.74 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=73.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRL 332 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~L 332 (666)
..++.+.+.+.. .+..+|||||||+|.++..|++. +|+|+|+++.++..++.+.. ..+. ...+...|+..+
T Consensus 15 ~i~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 15 LIINSIIDKAAL----RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQ-GTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHHTCC----CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHT-TSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHhcCC----CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEEcceecc
Confidence 456677776652 34579999999999999999865 89999999998877664332 2222 234555567666
Q ss_pred CCCCCCeeEEEecccccccccChH-HHH--------------HHH--HHhccCCeEE
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDG-ILL--------------LEV--NRMLRAGGYF 372 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~-~~L--------------~el--~RvLkPGG~l 372 (666)
+++ +||+|+++.. ++|..+.. .++ +|+ +++|+|||.+
T Consensus 90 ~~~--~fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 90 DLP--FFDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp CCC--CCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred cch--hhcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 665 7999997543 55533222 222 333 3699999987
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.8e-08 Score=102.37 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
...+|||||||+|.++..++++ +++..|+ |..+..++...+ ..+.. ..+...|+...+.+ .+|+|++..++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~-~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFS-FQEEEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSC-C--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhh-hcccCceeeecCccccCCCC--CceEEEeeeec
Confidence 4578999999999999988876 6777776 545554442221 11222 23444555444444 47999999999
Q ss_pred cccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+| +|. ..+|++++++|+|||.+++...
T Consensus 255 h~~-~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 255 HDW-ADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp GGS-CHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ccC-CHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 999 444 4789999999999999999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=9e-08 Score=99.42 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=78.4
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
.....++.+.+.+.. ....+|||+|||+|.++..++.. +|+|+|+|+.++..++. .+...++. ..+...|
T Consensus 107 ~te~lv~~~l~~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~-n~~~~~l~~~v~~~~~D 181 (284)
T 1nv8_A 107 ETEELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGE 181 (284)
T ss_dssp THHHHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESS
T ss_pred hHHHHHHHHHHHhcc----cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECc
Confidence 344566666665542 13368999999999988887643 89999999999988775 44445554 3444445
Q ss_pred ccCCCCCCCCe---eEEEecccccc----------cc--------cChHHHHHHHH-HhccCCeEEEEEE
Q 005981 329 TRRLPYPSQAF---DLIHCSRCRIN----------WT--------RDDGILLLEVN-RMLRAGGYFAWAA 376 (666)
Q Consensus 329 ~e~Lpf~d~sF---DlVv~s~~l~h----------~~--------~d~~~~L~el~-RvLkPGG~lv~st 376 (666)
... +++ ++| |+|+|+...+. +. .+...+++++. +.|+|||.+++..
T Consensus 182 ~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 182 FLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp TTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred chh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 433 222 578 99998632221 10 11227899999 9999999999863
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=89.78 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=86.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCC-CccceEEeccccccCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~ 598 (666)
.|||+|||+|.++.+|++++ +|+.+|. +.+++. ..+ +.+.+...+. .++ .+||+|.|+..|....+.
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~------~v~gvD~s~~~~~~--~~~-~~~~~~d~~~--~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN------TVVSTDLNIRALES--HRG-GNLVRADLLC--SINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS------EEEEEESCHHHHHT--CSS-SCEEECSTTT--TBCGGGCSEEEECCCCBTTCCC
T ss_pred eEEEeccCccHHHHHHHhcC------cEEEEECCHHHHhc--ccC-CeEEECChhh--hcccCCCCEEEECCCCccCCcc
Confidence 69999999999999999985 5666663 455555 222 3444333222 334 899999998777643322
Q ss_pred ------CCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEE
Q 005981 599 ------CNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTAD 660 (666)
Q Consensus 599 ------c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~ 660 (666)
.+...++.++-|.| |||.+++.. .....+++.++++...|+.......... -|++++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~ 160 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIK 160 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEE
Confidence 12247888888888 999999975 4456888999999999998665544332 35555544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=105.02 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp--f~d~sFDlVv~s 345 (666)
++.+|||+|||+|..+..++. ..|+++|+++.++..++. .+...|+. ..+...|...++ +++++||+|++.
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKD-FVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 457999999999998888775 379999999998877764 34445653 344455666665 555789999952
Q ss_pred ----c-cccccccCh----------------HHHHHHHHHhccCCeEEEEEEC
Q 005981 346 ----R-CRINWTRDD----------------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ----~-~l~h~~~d~----------------~~~L~el~RvLkPGG~lv~st~ 377 (666)
. ..++-.++. ..+|.++.++|||||.+++++.
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1 112211221 4689999999999999999975
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=96.84 Aligned_cols=101 Identities=17% Similarity=0.018 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
..+.+|||||||+|.++..+... .++++|+++.++..++.. +...+.+..+...|....+.+ ++||+|++.-+++++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~-~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPF-AREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHH-HHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHH-HHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHHh
Confidence 34679999999999999887744 999999999999877644 555566666666666655655 589999988776666
Q ss_pred ccChHHHHHHHHHhccCCeEEEEE
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.......+.++.+.|+++|.++-.
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEc
Confidence 322334445899999999887554
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.6e-08 Score=97.36 Aligned_cols=126 Identities=11% Similarity=0.248 Sum_probs=83.0
Q ss_pred eeEeeccccchHHHHHHhh--CCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCC-CC-CCCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEP-FD-TYPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~--~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~-~~-~yp~tyDlih 587 (666)
.+|||+|||.|.++.+|++ .+. .|+.+|. +.+++.+.++ |+ +.+.+..++. .+ ..+.+||+|.
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 147 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISDDI-----HVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF 147 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCTTC-----EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred CEEEEEeCchhHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence 4699999999999999998 344 5666663 4666666543 54 4455444333 33 3358999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----------------hhHHHHHHHHH----HhcCcEEEEEec
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------------IDVMDELQEIG----KAMGWHVTLRET 646 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----------------~~~~~~~~~i~----~~l~W~~~~~~~ 646 (666)
+... ...+..++.++.|+|||||++++.+. ......++++. +.-+|.......
T Consensus 148 ~~~~------~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 221 (232)
T 3ntv_A 148 IDAA------KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNI 221 (232)
T ss_dssp EETT------SSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECS
T ss_pred EcCc------HHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 7732 33467899999999999999999421 11123344433 344677666655
Q ss_pred cCCCCCceEEEEEEeC
Q 005981 647 AEGPHASYRILTADKR 662 (666)
Q Consensus 647 ~~~~~~~e~~l~~~k~ 662 (666)
.+ .+.+++|+
T Consensus 222 ~d------G~~i~~k~ 231 (232)
T 3ntv_A 222 DD------GLAISIKG 231 (232)
T ss_dssp TT------CEEEEEEC
T ss_pred CC------ceEEEEEC
Confidence 44 48888874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-08 Score=94.10 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=82.6
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---ccccc-ccCCCCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMH-DWCEPFDTYPR 581 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~-~~ce~~~~yp~ 581 (666)
.+.+..+ .+|||+|||.|.++..|++.+. +|+.+|. +.+++.+.++ |+ +.+.+ +..+.++. ..
T Consensus 28 ~~~~~~~--~~vldiG~G~G~~~~~l~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 99 (192)
T 1l3i_A 28 LAEPGKN--DVAVDVGCGTGGVTLELAGRVR-----RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-IP 99 (192)
T ss_dssp HHCCCTT--CEEEEESCTTSHHHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-SC
T ss_pred hcCCCCC--CEEEEECCCCCHHHHHHHHhcC-----EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-CC
Confidence 3444444 3699999999999999999864 5666663 5666666553 33 33332 22221221 15
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEE
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~ 643 (666)
+||+|.+.+.+. .+..+|.++.|+|+|||.+++.+. .+....+.++++...|++..
T Consensus 100 ~~D~v~~~~~~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 100 DIDIAVVGGSGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp CEEEEEESCCTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEECCchH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 899999986553 357999999999999999999864 55678888888888776543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.6e-08 Score=105.17 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=74.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--CCCCCeeEEEec--
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCS-- 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--f~d~sFDlVv~s-- 345 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+ +...+....+...|...++ +++++||+|++.
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~-~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDN-LKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHH-HHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-HHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 4579999999999988888753 799999999998877644 4445655555556666655 556789999952
Q ss_pred --cc-ccccccCh----------------HHHHHHHHHhccCCeEEEEEEC
Q 005981 346 --RC-RINWTRDD----------------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 --~~-l~h~~~d~----------------~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. .++-.++. ..+|.++.++|||||.+++++.
T Consensus 325 csg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 11111221 3779999999999999999974
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=99.18 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=91.8
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhc----cc---cccccccCCCCCCCCCccceEEe
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHA 588 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha 588 (666)
.-..|||+|||.|.++.+|+++ +. .++.+|.+.+++.+.++ |+ +.+.+...+.. .+|..||+|.+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~-----~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~ 238 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNA-----EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV-DYGNDYDLVLL 238 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTC-----EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS-CCCSCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC-----eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCcEEEE
Confidence 3457999999999999999987 43 45555543566666554 43 44443332222 35666999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh---------------------------HHHHHHHHHHhcCcEE
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID---------------------------VMDELQEIGKAMGWHV 641 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~---------------------------~~~~~~~i~~~l~W~~ 641 (666)
..++.+..+. +...+|.++.|+|||||+++|.|... ..++++++++.-.++.
T Consensus 239 ~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~ 317 (335)
T 2r3s_A 239 PNFLHHFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSH 317 (335)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSE
T ss_pred cchhccCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCe
Confidence 9988877432 34699999999999999999974310 1567788888888986
Q ss_pred EEEeccCCCCCceEEEEEEeC
Q 005981 642 TLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 642 ~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.....-.+ ...+++++++
T Consensus 318 ~~~~~~~~---~~~~i~~~~~ 335 (335)
T 2r3s_A 318 SQLHSLPT---TQQQVIVAYK 335 (335)
T ss_dssp EEEECCTT---SSSEEEEEEC
T ss_pred eeEEECCC---CceeEEEecC
Confidence 55433222 3467777653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.9e-08 Score=104.62 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
...+|||+|||+|.++..++.. +|+|+|+++.++..++.+ +...++ ...+...|+..+++++++||+|+|+..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 4578999999999998888754 799999999999888754 445565 345666778888888889999998654
Q ss_pred cccccc------C-hHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTR------D-DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~------d-~~~~L~el~RvLkPGG~lv~st 376 (666)
+..... + ...++.++.++| ||.+++.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 322211 1 146788899999 44444443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-08 Score=102.52 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=68.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c-cccccccCCCC-CCCC-CccceEEe-cc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L-IGVMHDWCEPF-DTYP-RTYDLLHA-AG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l-ig~~~~~ce~~-~~yp-~tyDliha-~~ 590 (666)
..|||+|||+|.++.+|++.+. -+|+.+|. +.+++.+.++. . +.+++...+.+ ..++ .+||+|.+ ..
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPI----DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE----EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEEeccCCHHHHHHHhcCC----CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4699999999999999988753 26777774 68888887764 2 34444333333 2344 89999998 32
Q ss_pred ccc-cCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 591 LFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 591 ~f~-~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.+. +..+.-..+.++.|+.|+|||||++++.+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 221 111122234789999999999999998753
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.1e-08 Score=103.36 Aligned_cols=107 Identities=17% Similarity=0.094 Sum_probs=75.9
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCC----CCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY----PSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf----~d~sFDlVv~s~~ 347 (666)
..+|||+|||+|.++..++.. +|+++|+++.++..++. .+...++. ..+...|+..+.. .+++||+|++...
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 368999999999999888865 89999999999988774 44445554 3444445433321 2578999998543
Q ss_pred cccc--------ccChHHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 348 RINW--------TRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 348 l~h~--------~~d~~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
.... ..+...++.++.++|+|||.+++++.+....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 331 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT 331 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC
Confidence 2221 1233478899999999999999997644333
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=102.81 Aligned_cols=108 Identities=12% Similarity=0.030 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCC----CCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPY----PSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf----~d~sFDlVv~ 344 (666)
...+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++. ..+...|+..+.. ..++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n-~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKEN-AKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 4479999999999999988864 799999999999888754 4445653 3444445433321 2578999998
Q ss_pred ccccccc--------ccChHHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 345 SRCRINW--------TRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 345 s~~l~h~--------~~d~~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
....... ..+...++.++.++|+|||.+++++......
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 341 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD 341 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC
Confidence 5432221 1234578899999999999999987543333
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=91.15 Aligned_cols=132 Identities=13% Similarity=0.164 Sum_probs=75.3
Q ss_pred eeEeeccccchHHHHHHhhC----CCceEEEEeeccCCCCChhHHHhccccccccccCCCCC------------------
Q 005981 520 RNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD------------------ 577 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~------------------ 577 (666)
..|||+|||.|+++.+|+++ +..|+.+-+.+. .. ..++ .+.+...+...
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-----~~---~~~v-~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM-----DP---IPNV-YFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC-----CC---CTTC-EEEECCTTTTSSCCC-----------CHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc-----CC---CCCc-eEEEccccchhhhhhccccccccccchhh
Confidence 46999999999999999876 243444444332 11 0122 22222222222
Q ss_pred ------CCC-CccceEEeccccccCCCC-CC-------HHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcE-
Q 005981 578 ------TYP-RTYDLLHAAGLFSVESKR-CN-------MSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWH- 640 (666)
Q Consensus 578 ------~yp-~tyDliha~~~f~~~~~~-c~-------~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~- 640 (666)
.++ .+||+|.|+..+...+.. -+ ...+|.++.|+|||||++++.... +....+...++.. |.
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~ 173 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQL 173 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEE
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hhe
Confidence 034 799999998665442210 00 124889999999999999996322 2344455555553 43
Q ss_pred EEEEec-cCCCCCceEEEEEEe
Q 005981 641 VTLRET-AEGPHASYRILTADK 661 (666)
Q Consensus 641 ~~~~~~-~~~~~~~e~~l~~~k 661 (666)
+..... ...+...|..+||++
T Consensus 174 v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 174 VHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EEECCCC-----CCEEEEEEEE
T ss_pred EEEECCcccCCcCceEEEEEec
Confidence 333222 222356799999987
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-08 Score=103.43 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=73.6
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc-----------c--cccccccCCCCC---CC--
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----------L--IGVMHDWCEPFD---TY-- 579 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG-----------l--ig~~~~~ce~~~---~y-- 579 (666)
-.+|||+|||.|.++..|++.+. -+|+.+| ++.+++.+.++. . +.+.+..++.++ .+
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRI----NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCEEEEECCCCcHHHHHHHhcCC----CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 35799999999999999997632 1566666 357777776652 1 444555555554 24
Q ss_pred -CCccceEEeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 580 -PRTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 580 -p~tyDliha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
+.+||+|.|..++.+. .+.-+...+|.++.|+|||||+++++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 2599999999877654 33334569999999999999999998543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=95.54 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=77.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~ 331 (666)
.++.+.++++ ++.+|||||||+|.++..++.. +|+++|+++.++..|+.+ +...++.. .+...|...
T Consensus 11 RL~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N-~~~~gl~~~I~~~~gD~l~ 83 (230)
T 3lec_A 11 RLQKVANYVP------KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKN-VSEHGLTSKIDVRLANGLS 83 (230)
T ss_dssp HHHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGG
T ss_pred HHHHHHHhCC------CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh
Confidence 4556666664 3378999999999999988875 699999999999888754 44556543 344445444
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
...+++.||+|+..+..- .-...+|.+..+.|+++|+|+++.
T Consensus 84 ~~~~~~~~D~IviaGmGg---~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 84 AFEEADNIDTITICGMGG---RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp GCCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccccccCEEEEeCCch---HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 333444799987544311 123578888899999999999985
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-07 Score=85.90 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=80.0
Q ss_pred eEeeccccchHHHHHHhhC-C--CceEEEEeeccCCCCChhHHHhccccccccccCCCCCC-------CC-CccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT-------YP-RTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~-------yp-~tyDliha~ 589 (666)
+|||+|||.|.++.+|++. | ..|+.+.+.+ +++. .+ +.+.+...+..+. ++ .+||+|.++
T Consensus 25 ~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-----~~~~---~~-~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----MDPI---VG-VDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----CCCC---TT-EEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-----cccc---Cc-EEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 6999999999999999887 3 4344433333 3322 11 2333322222220 33 799999998
Q ss_pred cccccCCCC--CC------HHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEEE-ec-cCCCCCceEEEE
Q 005981 590 GLFSVESKR--CN------MSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLR-ET-AEGPHASYRILT 658 (666)
Q Consensus 590 ~~f~~~~~~--c~------~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~~-~~-~~~~~~~e~~l~ 658 (666)
..+...... .. ...+|.++.|+|||||.+++... ......+.+.+... |+.... .. .......|.+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 174 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVRKPDSSRARSREVYIV 174 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEECCTTSCTTCCEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEeecCCcccccCceEEEE
Confidence 776554321 00 15889999999999999999743 23344455555543 665432 22 222356788998
Q ss_pred EEe
Q 005981 659 ADK 661 (666)
Q Consensus 659 ~~k 661 (666)
|++
T Consensus 175 ~~~ 177 (180)
T 1ej0_A 175 ATG 177 (180)
T ss_dssp EEE
T ss_pred Ecc
Confidence 876
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=95.59 Aligned_cols=100 Identities=11% Similarity=-0.027 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+.+|||||||+|.++..+... .|+++|+++.++..++. ++...|+...+...|...- .+.+.||+|+++-+++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~-~l~~~g~~~~~~v~D~~~~-~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDE-ALTRLNVPHRTNVADLLED-RLDEPADVTLLLKTLP 209 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHH-HHHHTTCCEEEEECCTTTS-CCCSCCSEEEETTCHH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeeeccc-CCCCCcchHHHHHHHH
Confidence 3679999999999998888654 89999999999987764 4445577766665553332 3468899999888766
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
++.......+.++.+.|+++|.++--
T Consensus 210 ~Le~q~kg~g~~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 210 CLETQQRGSGWEVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred HhhhhhhHHHHHHHHHhCCCCEEEec
Confidence 66332233444999999999998654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.7e-08 Score=96.52 Aligned_cols=97 Identities=7% Similarity=0.024 Sum_probs=69.9
Q ss_pred CCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC-CC-C-----CCCCee
Q 005981 275 IRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LP-Y-----PSQAFD 340 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~-Lp-f-----~d~sFD 340 (666)
.++|||||||+|..+..++. .+|+++|+++.++..++..+ .+.++.. .+...+... ++ + +.++||
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFI-RKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 47999999999988877763 38999999999888776544 3455532 333334322 22 1 257899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|++.. +..+...++.++.++|||||++++..
T Consensus 150 ~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999653 23445789999999999999999874
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=95.56 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=87.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCC-C-CCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDT-Y-PRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~-y-p~tyDliha~ 589 (666)
..|||+|||.|.++..|++++. . +|+.+|. +.+++.+.++ |+ +.+++...+.+.. + +.+||+|.++
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~--~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTK--A--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCC--C--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CEEEEcCCchhHHHHHHHHhcC--C--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 4699999999999999999853 1 6777774 5666666553 54 5555544444332 4 3899999997
Q ss_pred cccccC-----------------CCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 590 GLFSVE-----------------SKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 590 ~~f~~~-----------------~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
--|... ...+.++.++.++.|+|||||++++--..+....+...++...|....
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 554322 112456789999999999999999987777888888889988888653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.5e-08 Score=111.27 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC-CCCCCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~-Lpf~d~sFDlVv~s~~ 347 (666)
+.+|||+|||+|.++..++.. +|+++|+|+.++..++.+. ...++. ..+...|+.. ++...++||+|++...
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~-~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNL-RLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 479999999999999887754 6999999999998887544 445654 3444455433 3444578999998543
Q ss_pred cc----------ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RI----------NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~----------h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+ +...+...++.++.++|+|||++++++.
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 22 2223345789999999999999999975
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=99.29 Aligned_cols=136 Identities=15% Similarity=0.234 Sum_probs=93.9
Q ss_pred CCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHh----ccc---cccc-cccCCCCCCCCCccce
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVM-HDWCEPFDTYPRTYDL 585 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~e----rGl---ig~~-~~~ce~~~~yp~tyDl 585 (666)
......|||+|||.|.++.+|+++ ++ .++.+|.+.+++.+.+ .|+ |.+. +|.. ..+|..||+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-----~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~---~~~p~~~D~ 271 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGL-----RGTLLERPPVAEEARELLTGRGLADRCEILPGDFF---ETIPDGADV 271 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC-----EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---TCCCSSCSE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCC-----eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC---CCCCCCceE
Confidence 445678999999999999999987 33 2333444455555544 354 4444 4443 345668999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------------------------hHHHHHHHHHHhcCcEE
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------DVMDELQEIGKAMGWHV 641 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------------------~~~~~~~~i~~~l~W~~ 641 (666)
|.+..++.++.+. ....+|.++.|+|||||+++|.|.. ...++++++++.-.|+.
T Consensus 272 v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 272 YLIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 9999999777642 1247999999999999999996421 11466888999999997
Q ss_pred EEEeccCCCCCceEEEEEEeC
Q 005981 642 TLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 642 ~~~~~~~~~~~~e~~l~~~k~ 662 (666)
...... ......++.|+|.
T Consensus 351 ~~~~~~--~~~~~svie~~~a 369 (369)
T 3gwz_A 351 ERSLPC--GAGPVRIVEIRRA 369 (369)
T ss_dssp EEEEEC--SSSSEEEEEEEEC
T ss_pred EEEEEC--CCCCcEEEEEEeC
Confidence 655431 1235678888873
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=95.24 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=75.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecc-cC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RR 331 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~-e~ 331 (666)
++.+.++++ ++.+|||||||+|.++..++.. +|+++|+++.++..|+. .+...++.. .+...|. +.
T Consensus 6 L~~l~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~i~~~~~d~l~~ 78 (225)
T 3kr9_A 6 LELVASFVS------QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVK-NVEAHGLKEKIQVRLANGLAA 78 (225)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEECchhhh
Confidence 455555554 3368999999999999988875 79999999999988874 455566643 3333342 44
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++. ...||+|+.+++.- .-...++.+..+.|+++|+|+++.
T Consensus 79 l~~-~~~~D~IviaG~Gg---~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 79 FEE-TDQVSVITIAGMGG---RLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp CCG-GGCCCEEEEEEECH---HHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred ccc-CcCCCEEEEcCCCh---HHHHHHHHHHHHHhCCCCEEEEEC
Confidence 432 12699998654311 113578889999999999999985
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.7e-08 Score=99.83 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=83.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||+|||+|+|+.+|++.+.. .|+.+|. +.+++.+.++ |+ +.+.+..++.+.. +.+||+|.++..
T Consensus 128 ~VLDlgcG~G~~~~~la~~~~~----~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p- 201 (278)
T 2frn_A 128 LVVDMFAGIGHLSLPIAVYGKA----KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 201 (278)
T ss_dssp EEEETTCTTTTTHHHHHHHTCC----EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred EEEEecccCCHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-
Confidence 5999999999999999998763 4666774 5677666553 55 3345555544443 689999998633
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-------hhHHHHHHHHHHhcCcEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-------~~~~~~~~~i~~~l~W~~~~ 643 (666)
.....++.++.|+|||||++++.+. .+..+.+.+.++..+|++..
T Consensus 202 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 2235789999999999999999643 24578889999999999876
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=96.17 Aligned_cols=109 Identities=15% Similarity=0.047 Sum_probs=77.1
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~ 331 (666)
.++.+.+.++ ++.+|||||||+|.++..|+.. +|+++|+++.++..|+.+ +...++.. .+...|...
T Consensus 11 RL~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N-~~~~gl~~~I~v~~gD~l~ 83 (244)
T 3gnl_A 11 RLEKVASYIT------KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQ-VRSSGLTEQIDVRKGNGLA 83 (244)
T ss_dssp HHHHHHTTCC------SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGG
T ss_pred HHHHHHHhCC------CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEEecchhh
Confidence 3556666665 3368999999999999998875 699999999999888754 45566643 344444333
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
...++..||+|+..+..- .-...+|.+..+.|+++|+|+++.
T Consensus 84 ~~~~~~~~D~IviagmGg---~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 84 VIEKKDAIDTIVIAGMGG---TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp GCCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccCccccccEEEEeCCch---HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 333334699988644311 123478888999999999999995
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-07 Score=98.27 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+.+|||+|||+|.++.. +.. +|+++|+++.++..++. .+...++. ..+...|...+. ++||+|++...
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~-n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP-- 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKK-NIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP-- 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT--
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc--
Confidence 347999999999999988 755 89999999999988774 44445552 345555655554 78999997532
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.....++.++.++|+|||.+++.+.
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1234789999999999999998754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-08 Score=102.28 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=72.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCC-CCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDT-YPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~-yp~tyDliha~~ 590 (666)
..|||+|||.|.++.+|++.|. .+|+.+|. +.++..+.++ |+ +.+.+.-++..+. -+.+||+|.|..
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI----GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC----SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CeEEEECCCCCHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 4699999999999999988764 14566663 5677777665 33 4455544444433 248999999998
Q ss_pred ccccC-CCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 591 LFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 591 ~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
++.+. .+.-+...+|.++.|+|||||++++...
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 87552 2233457899999999999999999853
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-07 Score=97.53 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChh--HHHhccc---cccc-cccCCCCCCCCCccceEEec
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLP--VIYDRGL---IGVM-HDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~--~~~erGl---ig~~-~~~ce~~~~yp~tyDliha~ 589 (666)
......|||+|||.|.++.+|+++.-++ .++.+|.+..+. .+.+.|+ +.+. +|.. ...| +||+|.+.
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~p-~~D~v~~~ 254 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGL---QGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL---REVP-HADVHVLK 254 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTE---EEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT---TCCC-CCSEEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCC---EEEEecCHHHhhcccccccCCCCCeEEEecCCC---CCCC-CCcEEEEe
Confidence 3456789999999999999998862222 223333221111 0111233 3333 3442 4456 99999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-------------------------hHHHHHHHHHHhcCcEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------------------------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-------------------------~~~~~~~~i~~~l~W~~~~~ 644 (666)
.++.++.+. ....+|.++.|+|||||+++|.|.. ...++++++++.-.++....
T Consensus 255 ~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 333 (348)
T 3lst_A 255 RILHNWGDE-DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV 333 (348)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 999887653 2258999999999999999997531 02467888899999987655
Q ss_pred eccCCCCCceEEEEEEe
Q 005981 645 ETAEGPHASYRILTADK 661 (666)
Q Consensus 645 ~~~~~~~~~e~~l~~~k 661 (666)
.... ....++.++|
T Consensus 334 ~~~~---~~~~vie~~p 347 (348)
T 3lst_A 334 VGTS---SVMSIAVGVP 347 (348)
T ss_dssp EECS---SSCEEEEEEE
T ss_pred EECC---CCcEEEEEEe
Confidence 4422 2355666655
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.9e-08 Score=94.16 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=77.5
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHH--------hccc--cccccccCCCCCCCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIY--------DRGL--IGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~--------erGl--ig~~~~~ce~~~~yp~tyDli 586 (666)
..|||+|||+|.++.+|+++ +. +|+.+|. +.++..+. .+|+ +.+.+...+.++..+.+ |.+
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~-----~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR-----LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE-----EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEE
Confidence 35999999999999999998 44 5666763 56776432 2454 45556665665543355 777
Q ss_pred Eeccccc-----cCCCCCCHHHHHHHhhhcccCCeEEEEEeC------------------hh-HHHHHHHHHHhcCcEEE
Q 005981 587 HAAGLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------------ID-VMDELQEIGKAMGWHVT 642 (666)
Q Consensus 587 ha~~~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~------------------~~-~~~~~~~i~~~l~W~~~ 642 (666)
+..-.+. +..+. ..+|.|+.|+|||||.++++.. .+ ..+.+++++..-.|++.
T Consensus 103 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSS---PEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp EEESCCHHHHHHHHTSS---SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEccchhhhhhhhccH---HHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 7321111 11111 5899999999999999999621 11 23458888999999876
Q ss_pred EE
Q 005981 643 LR 644 (666)
Q Consensus 643 ~~ 644 (666)
..
T Consensus 180 ~~ 181 (218)
T 3mq2_A 180 DC 181 (218)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=97.93 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=59.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp 333 (666)
.+++.+.+.+.. ....+|||||||+|.++..|+++ +|+|+|+++.++..++.+.. ..+.. ..+...|+..++
T Consensus 29 ~i~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 29 GILDKIIYAAKI----KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----CCSSC
T ss_pred HHHHHHHHhcCC----CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECchhhCC
Confidence 345666665542 34579999999999999999986 89999999999987765443 33433 334445666666
Q ss_pred CCCCCeeEEEeccccccc
Q 005981 334 YPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~ 351 (666)
+ .+||+|+++.. .++
T Consensus 104 ~--~~~D~Vv~n~p-y~~ 118 (299)
T 2h1r_A 104 F--PKFDVCTANIP-YKI 118 (299)
T ss_dssp C--CCCSEEEEECC-GGG
T ss_pred c--ccCCEEEEcCC-ccc
Confidence 5 48999997644 555
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=99.64 Aligned_cols=138 Identities=24% Similarity=0.304 Sum_probs=91.2
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh----ccc---cccc-cccCCCCCCCCCccceEEec
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVM-HDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e----rGl---ig~~-~~~ce~~~~yp~tyDliha~ 589 (666)
.-..|||+|||.|.++.+|++..-++ .++.+|.+.+++.+.+ .|+ +.+. +|..+ ..|..||+|.+.
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~~~ 255 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK---PLPVTADVVLLS 255 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSCCEEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---cCCCCCCEEEEe
Confidence 44679999999999999999872111 3333443456665554 343 3333 34433 356569999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC--h--h-----------------------HHHHHHHHHHhcCcEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS--I--D-----------------------VMDELQEIGKAMGWHVT 642 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~--~--~-----------------------~~~~~~~i~~~l~W~~~ 642 (666)
.++.+..+. ....+|.++.|+|||||+++|.|. . + ..+.++++++.-.++..
T Consensus 256 ~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~ 334 (374)
T 1qzz_A 256 FVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA 334 (374)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred ccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence 998876542 224899999999999999999876 2 1 24567788888899865
Q ss_pred EEeccCCCC--CceEEEEEEeC
Q 005981 643 LRETAEGPH--ASYRILTADKR 662 (666)
Q Consensus 643 ~~~~~~~~~--~~e~~l~~~k~ 662 (666)
....-.+.. ....++.++|.
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 335 SERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEECCSSCSSCEEEEEEEEC
T ss_pred EEEECCCCcccCCcEEEEEEEC
Confidence 443222211 12278888874
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-07 Score=96.50 Aligned_cols=117 Identities=12% Similarity=0.069 Sum_probs=82.2
Q ss_pred CCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc-
Q 005981 247 GGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA- 322 (666)
Q Consensus 247 ggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~- 322 (666)
..++|..+...-..++.+.+. ++.+|||+|||+|.++..++.+ +|+++|+++..+..++. .++.+++..
T Consensus 104 ~k~~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~-N~~~N~v~~~ 176 (278)
T 3k6r_A 104 AKIMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVEDR 176 (278)
T ss_dssp TTSCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTCTTT
T ss_pred cceEEcCCcHHHHHHHHHhcC------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHH-HHHHcCCCCc
Confidence 344555555444556666654 3589999999999988877643 89999999988877664 555566654
Q ss_pred -eEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 323 -MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 323 -~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+...|...++ ..+.||.|+++.. .....++..+.++||+||.+.+.+
T Consensus 177 v~~~~~D~~~~~-~~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 177 MSAYNMDNRDFP-GENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp EEEECSCTTTCC-CCSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCcHHHhc-cccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEEe
Confidence 33444555554 3578999986532 334567888899999999987754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=94.86 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=68.0
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC-C--CceEEEEeeccCC-C------CChhHHHhc----cc---ccccccc-
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSG-F------NTLPVIYDR----GL---IGVMHDW- 572 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~-~------~~l~~~~er----Gl---ig~~~~~- 572 (666)
.+++..+ ..|||+|||.|.++..|+++ | . +|+.+|. + .+++.+.++ |+ +.+.+..
T Consensus 38 ~~~~~~~--~~vLDiGcG~G~~~~~l~~~~g~~~-----~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 38 AWQVKPG--EKILEIGCGQGDLSAVLADQVGSSG-----HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHTCCTT--CEEEEESCTTSHHHHHHHHHHCTTC-----EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HcCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCC-----EEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 3445444 36999999999999999987 3 4 4555553 2 378777665 33 3333322
Q ss_pred --CCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 573 --CEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 573 --ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+.. .++ .+||+|++.+++.+..+. ..++..+.++|+|||++++.+
T Consensus 111 ~~~~~~-~~~~~~fD~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 111 LSDDLG-PIADQHFDRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TTTCCG-GGTTCCCSEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEEE
T ss_pred hhhccC-CCCCCCEEEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEEE
Confidence 1122 233 899999999999887654 455666667777799999964
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=99.40 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=70.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----cc---cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
..|||+|||.|.++..+++.|. ..|+.+|...++..+.++ |+ +.+.+.-.+.++ .|..||+|.+..++
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~----~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGA----RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISEPMG 126 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEEECCCB
T ss_pred CEEEEcCCCccHHHHHHHhCCC----CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC-CCCceeEEEEeCch
Confidence 3699999999999999998864 145555543466555443 55 556655555443 46889999999887
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+... -.+...+.++.|+|||||.+++.
T Consensus 127 ~~~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 127 YMLFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 77654 34678889999999999999974
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=98.90 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=71.2
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----cc---cccccccCCCCCCCC-CccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDliha~~~f 592 (666)
.|||+|||.|.++..+++.|. ..|+.+|...++..+.++ |+ |.+.+...+.++ +| ..||+|.|..+.
T Consensus 41 ~VLDiGcGtG~ls~~la~~g~----~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 41 IVLDVGCGTGILSMFAAKHGA----KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMG 115 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCC----SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCB
T ss_pred EEEEecCccHHHHHHHHHCCC----CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCch
Confidence 699999999999999999864 145556543466665543 55 556666655554 45 899999998665
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
....+.-.++.++.+++|+|||||.+++
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5555555678999999999999999984
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=99.14 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=68.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----cc---cccccccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDliha~~~ 591 (666)
..|||+|||+|.++..|++.|. -.|+.+|...+++.+.++ |+ |.+.+...+.++ +| .+||+|.+..+
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~----~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA----KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWM 140 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCC
T ss_pred CEEEEeeccCcHHHHHHHHcCC----CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCc
Confidence 3699999999999999999864 145555543466666553 44 556666655553 45 89999999864
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVY 619 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~i 619 (666)
.....+.-.+..+|.++.|+|||||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3333333456789999999999999998
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.3e-08 Score=102.50 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=73.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh----ccc---cccccccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e----rGl---ig~~~~~ce~~~~yp-~tyDliha~~~ 591 (666)
.+|||+|||.|.++..|++.|. ..|+.+|...++..+.+ .|+ |.+.+...+.++ +| .+||+|.+..+
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~----~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA----RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWM 142 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC----SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCC
T ss_pred CEEEEEeccchHHHHHHHHCCC----CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccc
Confidence 4599999999999999999864 14555664346665554 455 566666666663 56 89999999876
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.........++.++.+++|+|||||.+|+.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 555555567789999999999999999764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-08 Score=98.11 Aligned_cols=122 Identities=13% Similarity=0.096 Sum_probs=73.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC--CCChhHH---Hh----ccc--cccccccCCCCCC-CCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVI---YD----RGL--IGVMHDWCEPFDT-YPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~--~~~l~~~---~e----rGl--ig~~~~~ce~~~~-yp~tyDlih 587 (666)
..|||+|||.|.++.+|+++... .+|+.+|. +.+++.| .+ +|+ +.+.+.-.+.++. +...+|.++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~---~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQN---TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTT---EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 45999999999999999954111 26777773 4666665 33 355 4445555555532 124455555
Q ss_pred ecccccc--CCCCCCHHHHHHHhhhcccCCeEEEEE----eC---h------------hH-H-HHHHHHHHhcCcEEEEE
Q 005981 588 AAGLFSV--ESKRCNMSTIMLEMDRMLRPGGHVYIR----DS---I------------DV-M-DELQEIGKAMGWHVTLR 644 (666)
Q Consensus 588 a~~~f~~--~~~~c~~~~~l~E~dRiLRPgG~~ii~----d~---~------------~~-~-~~~~~i~~~l~W~~~~~ 644 (666)
+...+.. ...+-....+|.|+.|+|||||.++|. +. . +. . +.+.+.+.+-.|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 4321111 111112357899999999999999991 11 0 11 1 12777888888987543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-07 Score=95.74 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=73.7
Q ss_pred eeEeeccccchHHHHHHhhC------CCceEEEEeeccCC-CCChhHHHhc-cccccccccCCCC---CCCC-CccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ------KFDCWVMNVVPVSG-FNTLPVIYDR-GLIGVMHDWCEPF---DTYP-RTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~------~~~vwvmnv~~~~~-~~~l~~~~er-Glig~~~~~ce~~---~~yp-~tyDlih 587 (666)
.+|||+|||+|+.++.|++. +. .|+.+|. +.+++.+... .-|.+.+...+.+ +..+ .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~-----~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDC-----QVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCC-----EEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCC-----EEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 46999999999999999875 44 3444542 4444444321 1144444443332 2223 3799999
Q ss_pred eccccccCCCCCCHHHHHHHhhh-cccCCeEEEEEeCh-----hHHHHHHHHHHhc--CcEEE
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDR-MLRPGGHVYIRDSI-----DVMDELQEIGKAM--GWHVT 642 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dR-iLRPgG~~ii~d~~-----~~~~~~~~i~~~l--~W~~~ 642 (666)
+... + .++..+|.|+.| +|||||++++.|.. .....+.++++.. ++++.
T Consensus 158 ~d~~--~----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 158 IDNA--H----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EESS--C----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred ECCc--h----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 8753 2 256899999998 99999999998732 1234778888887 56653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=104.19 Aligned_cols=103 Identities=18% Similarity=0.263 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCC-CCCCeeEEEec-
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPY-PSQAFDLIHCS- 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf-~d~sFDlVv~s- 345 (666)
++.+|||+|||+|..+..|++. .|+++|+++.++..++.+. ...|+.. .+...|...++. .+++||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~-~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANI-SRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHH-HHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 4579999999999988877752 7999999999988776544 3445543 344456655543 45789999972
Q ss_pred ---cc-cc--------ccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 ---RC-RI--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ---~~-l~--------h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. .+ +|..+ ...+|.++.++|||||.++++|.
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 11 11 12110 13678999999999999999975
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=93.90 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=83.4
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCCCCC--Cccce
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFDTYP--RTYDL 585 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~~yp--~tyDl 585 (666)
++|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ |.+...-. +.++..+ .+||+
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADG-----QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTC-----EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred CEEEEecCCchHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 57999999999999999987 44 4566663 5667666654 54 34443322 2233333 49999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh------------HHHHHHHH----HHhcCcEEEEEeccCC
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------VMDELQEI----GKAMGWHVTLRETAEG 649 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~------------~~~~~~~i----~~~l~W~~~~~~~~~~ 649 (666)
|.++.. .-....++.++-|+|||||++++.|..- ....++++ .+.-+|+......- |
T Consensus 140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g 212 (248)
T 3tfw_A 140 IFIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-G 212 (248)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-S
T ss_pred EEECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-C
Confidence 998631 2234689999999999999999974321 22333443 34446766654221 2
Q ss_pred CCCceEEEEEEeC
Q 005981 650 PHASYRILTADKR 662 (666)
Q Consensus 650 ~~~~e~~l~~~k~ 662 (666)
......+.+++|+
T Consensus 213 ~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 213 TKGWDGFTLAWVN 225 (248)
T ss_dssp TTCSEEEEEEEEC
T ss_pred CCCCCeeEEEEEe
Confidence 1234678888874
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-07 Score=90.72 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=76.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCCC-------CC----CccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT-------YP----RTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~-------yp----~tyDliha 588 (666)
.+|||+|||+|+++.+|++++..|+.+.+.|.... .++--+..|..+ ..+ ++ .+||+|.|
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~--------~~v~~~~~D~~~-~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI--------AGVRFIRCDIFK-ETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC--------TTCEEEECCTTS-SSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC--------CCeEEEEccccC-HHHHHHHHHHhhcccCCcceEEec
Confidence 46999999999999999998664555444443210 133212233221 111 11 48999999
Q ss_pred ccccccCCCC--------CCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcCcEEEEEec-cCCCCCceEEEE
Q 005981 589 AGLFSVESKR--------CNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTLRET-AEGPHASYRILT 658 (666)
Q Consensus 589 ~~~f~~~~~~--------c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~W~~~~~~~-~~~~~~~e~~l~ 658 (666)
+......... ...+.+|.++.|+|||||.|++.- ..+....+...++..==++.+... ..-+..+|..+|
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~v 177 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIM 177 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEEEECC------CCEEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEEEECCCCccCCCceEEEE
Confidence 7543322211 112478899999999999999863 222334555555553222333322 223367899999
Q ss_pred EEe
Q 005981 659 ADK 661 (666)
Q Consensus 659 ~~k 661 (666)
|++
T Consensus 178 ~~~ 180 (191)
T 3dou_A 178 FFG 180 (191)
T ss_dssp EEE
T ss_pred Eee
Confidence 986
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=9.2e-08 Score=106.11 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC-CCCCCeeEEEe---
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHC--- 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp-f~d~sFDlVv~--- 344 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+ +...|+...+...|...++ +.+++||+|++
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n-~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLEN-VERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH-HHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCeEEEEECCHHHhhhhccccCCEEEECCC
Confidence 4579999999999988887742 799999999998877644 4445655444445555554 23578999995
Q ss_pred -cccc-c--------ccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 -SRCR-I--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 -s~~l-~--------h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+... + +|..+ ...+|.++.++|||||.++++|-
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2111 1 11111 14688999999999999999974
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-07 Score=90.13 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=79.7
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc-----cc--cccccccCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR-----GL--IGVMHDWCEPFD 577 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er-----Gl--ig~~~~~ce~~~ 577 (666)
.+.+.+..+ .+|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ |. +.+.+...+..+
T Consensus 89 ~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~ 161 (258)
T 2pwy_A 89 VTLLDLAPG--MRVLEAGTGSGGLTLFLARAVGEKG-----LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE 161 (258)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred HHHcCCCCC--CEEEEECCCcCHHHHHHHHHhCCCC-----EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence 344455444 36999999999999999987 44 5566663 5677777665 53 334433322222
Q ss_pred CCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHhcCcEE
Q 005981 578 TYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHV 641 (666)
Q Consensus 578 ~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~l~W~~ 641 (666)
++ .+||+|.++ .-+...+|.++.|+|||||++++.+... ...++.+.++...|..
T Consensus 162 -~~~~~~D~v~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 162 -LEEAAYDGVALD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp -CCTTCEEEEEEE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred -CCCCCcCEEEEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 44 789999985 1233588999999999999999987653 5666666666666653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-07 Score=97.70 Aligned_cols=138 Identities=22% Similarity=0.327 Sum_probs=92.6
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----cc---cccc-cccCCCCCCCCCccceEEec
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~tyDliha~ 589 (666)
.-.+|||+|||.|.++.+|+++.-++ .++.+|.+.+++.+.++ |+ +.+. +|..+ .+|..||+|.+.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~~~ 256 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHV---SATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE---PLPRKADAIILS 256 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSSCEEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCC---EEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---CCCCCccEEEEc
Confidence 34579999999999999999874222 33334435667666553 43 3333 44433 356569999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh--h------------------------HHHHHHHHHHhcCcEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--D------------------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~--~------------------------~~~~~~~i~~~l~W~~~~ 643 (666)
.++.+..+. ....+|.++.|+|||||+++|.|.. . ..+.++++++.-.+++..
T Consensus 257 ~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (360)
T 1tw3_A 257 FVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 335 (360)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEE
Confidence 998876542 2248999999999999999998654 0 135677888888998754
Q ss_pred EeccCCC--CCceEEEEEEeC
Q 005981 644 RETAEGP--HASYRILTADKR 662 (666)
Q Consensus 644 ~~~~~~~--~~~e~~l~~~k~ 662 (666)
...-.+. .....++.|+|.
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 336 VRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEECSSSSCEEEEEEEEEC
T ss_pred EEeCCCCcccCccEEEEEEeC
Confidence 4322221 011578888874
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-07 Score=98.07 Aligned_cols=133 Identities=14% Similarity=0.241 Sum_probs=90.4
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhc----cc---cccccccCCCCCCCCCccceEEe
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHA 588 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha 588 (666)
....|||+|||.|.++.+|+++ +. .++.+|.+.+++.+.++ |+ +.+.....+.. .+|. +|+|.+
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~-----~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~-~D~v~~ 262 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPEL-----DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE-SYPE-ADAVLF 262 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTC-----EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS-CCCC-CSEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCC-----eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC-CCCC-CCEEEE
Confidence 4467999999999999999987 33 33344445667766654 55 44443322222 2343 499999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------------------------hHHHHHHHHHHhcCcE
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------------DVMDELQEIGKAMGWH 640 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------------------~~~~~~~~i~~~l~W~ 640 (666)
..++.++.+. ....+|.++.|+|||||+++|.|.. -..+++++++++-.++
T Consensus 263 ~~vlh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~ 341 (359)
T 1x19_A 263 CRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 341 (359)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCE
T ss_pred echhccCCHH-HHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCc
Confidence 9998887642 2468999999999999999987610 1345677788888887
Q ss_pred EEEEeccCCCCCceEEEEEEeC
Q 005981 641 VTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 641 ~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
......-. ...+++++|+
T Consensus 342 ~v~~~~~~----~~~vi~a~kp 359 (359)
T 1x19_A 342 DVTMVRKY----DHLLVQAVKP 359 (359)
T ss_dssp EEEEEEET----TEEEEEEECC
T ss_pred eEEEEecC----CceEEEEeCC
Confidence 65433211 4678888884
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=94.30 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=81.6
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhccc---cccccccCCC-CCCC-----CCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEP-FDTY-----PRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~ce~-~~~y-----p~tyDlih 587 (666)
++|||+|||.|..+.+|++. +..|+.+-+.+.......+.+...|+ |.+.+...+. ++.+ +.+||+|.
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~ 141 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIF 141 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEE
Confidence 47999999999999999873 44444444444333334444545565 4454433322 2222 47899999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------------hHHHHHHHHHHhc----CcEEEEEeccCCCC
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKAM----GWHVTLRETAEGPH 651 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------~~~~~~~~i~~~l----~W~~~~~~~~~~~~ 651 (666)
++.. .-....++.++.|+|||||++++.|.. .....++++.+.+ ++++.+....
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~---- 211 (242)
T 3r3h_A 142 IDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIA---- 211 (242)
T ss_dssp EESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSS----
T ss_pred EcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEcc----
Confidence 8742 223467899999999999999996432 1223444444433 5666555443
Q ss_pred CceEEEEEEeC
Q 005981 652 ASYRILTADKR 662 (666)
Q Consensus 652 ~~e~~l~~~k~ 662 (666)
..+++++|+
T Consensus 212 --dG~~~~~k~ 220 (242)
T 3r3h_A 212 --DGMFLVQPI 220 (242)
T ss_dssp --SCEEEEEEC
T ss_pred --CceEEEEEc
Confidence 348888874
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=92.74 Aligned_cols=132 Identities=16% Similarity=0.087 Sum_probs=78.9
Q ss_pred eeEeeccccchHHHHHHhhC-C--CceEEEEeeccCC-C----CChhHHHhccccccccccCCC---CCCCCCccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSG-F----NTLPVIYDRGLIGVMHDWCEP---FDTYPRTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~-~----~~l~~~~erGlig~~~~~ce~---~~~yp~tyDliha 588 (666)
..|||+|||+|.++.+|++. | . .|+.+|. + .+++.+.++.-+.+.+...+. ++..+.+||+|.+
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~-----~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDG-----LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC-----EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCc-----EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 36999999999999999887 2 3 3455553 2 245555554333344333332 1222479999999
Q ss_pred ccccccCCCCCC-HHHHHHHhhhcccCCeEEEEEeChh----------HHHHHHHHHHhcCcEEEEEeccCCCCCceEEE
Q 005981 589 AGLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRDSID----------VMDELQEIGKAMGWHVTLRETAEGPHASYRIL 657 (666)
Q Consensus 589 ~~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~ii~d~~~----------~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l 657 (666)
+.. ..+ ...++.++.|+|||||++++.-... ...+-.++++...|++.....-+.-....-++
T Consensus 154 ~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v 227 (233)
T 2ipx_A 154 DVA------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVV 227 (233)
T ss_dssp CCC------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEE
T ss_pred cCC------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEE
Confidence 633 112 1355788999999999999963221 12122466777789876532222112345667
Q ss_pred EEEeC
Q 005981 658 TADKR 662 (666)
Q Consensus 658 ~~~k~ 662 (666)
+++|+
T Consensus 228 ~~~~~ 232 (233)
T 2ipx_A 228 VGVYR 232 (233)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77663
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-08 Score=98.22 Aligned_cols=97 Identities=11% Similarity=-0.019 Sum_probs=70.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc---cccccccCCCCCC---CC--CccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDT---YP--RTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl---ig~~~~~ce~~~~---yp--~tyDliha~~ 590 (666)
..|||+|||.|.++..|++.+. +|+.+|. +.+++.+.++.- +.+.....+.++. ++ ..||+|.+..
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP-----RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS-----CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CeEEEEcCCCCHHHHHHHHhCC-----CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 3599999999999999999875 5666763 578888877632 3333333222111 11 2499999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++.+... -+...+|.++.|+|||||+++|.|
T Consensus 133 ~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 133 GFHHIPV-EKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp SSTTSCG-GGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 8888753 345799999999999999988875
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=97.86 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=77.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCC-hhHH-Hhccc-cccc--cccCCCCCCCCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNT-LPVI-YDRGL-IGVM--HDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~-l~~~-~erGl-ig~~--~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
..|||+|||.|+|+.+|++++ .|+.+-+.+...... .... ...|. +-+. ....+.++ +.+||+|.|+.. .+
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~-~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~ 151 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRP-HVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-ES 151 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTST-TEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-CC
T ss_pred CEEEEeCcCCCHHHHHHHHcC-cEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-cc
Confidence 469999999999999999984 577766666311000 0000 00111 2223 22322233 489999999855 22
Q ss_pred CCCCC-C---HHHHHHHhhhcccCCe--EEEEEe----ChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 595 ESKRC-N---MSTIMLEMDRMLRPGG--HVYIRD----SIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 595 ~~~~c-~---~~~~l~E~dRiLRPgG--~~ii~d----~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
..+.- + ...+|.++.|+||||| .|++.. ..++++.++.+.+.+. .+.+...-.-....|.++||.+
T Consensus 152 ~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~ 227 (265)
T 2oxt_A 152 SPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA 227 (265)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred CCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence 22110 0 0137899999999999 999963 2323344444444332 3333332222345688888754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.1e-08 Score=94.79 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=81.8
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCCCCC-----Cc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFDTYP-----RT 582 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~~yp-----~t 582 (666)
.+|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+.-. +.++.++ .+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDG-----TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ 140 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCC-----EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence 36999999999999999986 44 4556663 4666666554 54 33443322 2222222 78
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh------------HHHHHHHH----HHhcCcEEEEEec
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------VMDELQEI----GKAMGWHVTLRET 646 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~------------~~~~~~~i----~~~l~W~~~~~~~ 646 (666)
||+|.+... .-....++.++-|+|||||++++.|..- ....++++ ...-+|+......
T Consensus 141 fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 214 (225)
T 3tr6_A 141 YDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI 214 (225)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred ccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 999997632 2345789999999999999999975421 12234443 3344677776655
Q ss_pred cCCCCCceEEEEEEeC
Q 005981 647 AEGPHASYRILTADKR 662 (666)
Q Consensus 647 ~~~~~~~e~~l~~~k~ 662 (666)
.+ .+++++|+
T Consensus 215 ~d------G~~~~~k~ 224 (225)
T 3tr6_A 215 GD------GLTLARKK 224 (225)
T ss_dssp TT------CEEEEEEC
T ss_pred CC------ccEEEEEC
Confidence 44 48888874
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.2e-07 Score=104.50 Aligned_cols=96 Identities=10% Similarity=0.148 Sum_probs=75.4
Q ss_pred eeEeeccccchHHHHHHhhCC---CceEEEEeeccC-CCCChhHHHhc----------cc--cccccccCCCCCCCCCcc
Q 005981 520 RNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVS-GFNTLPVIYDR----------GL--IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~---~~vwvmnv~~~~-~~~~l~~~~er----------Gl--ig~~~~~ce~~~~yp~ty 583 (666)
..|||+|||.|.++.+|++.+ . .|+.+| ++.+++.|.+| |+ +.+++...+.++....+|
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~a-----~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sF 797 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSLQ-----TIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDV 797 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCCC-----EEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSC
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCC-----eEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCe
Confidence 469999999999999999986 4 566677 36788888662 55 666666666666555999
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|+|.|..+|.|..+. ....++.|+.|+|||| ++||+.
T Consensus 798 DlVV~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 798 DIGTCLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp CEEEEESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEE
T ss_pred eEEEEeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEe
Confidence 999999999998753 2346899999999999 888864
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=94.45 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=75.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc------------cc--cccccccCCC-CCC-CC-C
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR------------GL--IGVMHDWCEP-FDT-YP-R 581 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er------------Gl--ig~~~~~ce~-~~~-yp-~ 581 (666)
..|||+|||+|+|+.+|++.+-+ .+|+.+|. +.+++.+.++ |+ +.++...... ++. ++ .
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE---DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT---SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC---CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 46999999999999999987421 25667763 5666666543 55 4444433332 221 43 7
Q ss_pred ccceEEeccccccC-------CCCCCHHHHHHHhhhcccCCeEEEE-EeChhHHHHHHHHHHhcCc
Q 005981 582 TYDLLHAAGLFSVE-------SKRCNMSTIMLEMDRMLRPGGHVYI-RDSIDVMDELQEIGKAMGW 639 (666)
Q Consensus 582 tyDliha~~~f~~~-------~~~c~~~~~l~E~dRiLRPgG~~ii-~d~~~~~~~~~~i~~~l~W 639 (666)
++|.|... |... ..+-....+|.++.|+|||||.+++ +|..+..+.+.+.+..-.+
T Consensus 128 ~~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 88888743 2211 1121225899999999999999999 5777667777766666554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.5e-08 Score=97.70 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=76.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCC-CC-C-CCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPF-DT-Y-PRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~-~~-y-p~tyDliha~ 589 (666)
..|||+|||.|.++.+|++..-+ .+|+.+|. +.++..+.+ .|+ +.+++...+.+ +. + +.+||+|++.
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~---~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPE---QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTT---SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCC---CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 46999999999999999977211 15667773 566666544 465 44444433332 21 3 4899999986
Q ss_pred cccccCCC-----CCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhc-CcEE
Q 005981 590 GLFSVESK-----RCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAM-GWHV 641 (666)
Q Consensus 590 ~~f~~~~~-----~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l-~W~~ 641 (666)
...-.... |-.-..++.++.|+|||||+++|. |.....+.+.+++... .|+.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~ 171 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN 171 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence 22111111 111236999999999999999996 6666667777766543 4543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.3e-07 Score=96.45 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCchhHHHhcc---------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLP---------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~---------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~ 344 (666)
...+|||+|||+|.++..+++ .+++|+|+++.++..|+.+... .++...+...|... +...+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~-~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh-CCCCceEEECCCCC-ccccCCccEEEE
Confidence 447899999999988876653 3689999999988877755443 45544555555433 234578999998
Q ss_pred cccccccccCh------------------HHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWTRDD------------------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~~d~------------------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+..+.++ ... ..++.++.+.|+|||.+++..+
T Consensus 208 NPPfg~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYY-PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEE-SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCc-CchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 8664343 211 1579999999999999999863
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-08 Score=106.92 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=81.6
Q ss_pred HHHHhcccCCCceeeEeecccc------chHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhccccccccccCCCC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAG------FGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPF 576 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G------~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~ 576 (666)
.|.+.+..-..+-.+|||+||| +||.+..|+++ +. .|+.+|. +.+. ....-|.++..-++.+
T Consensus 205 ~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a-----~V~GVDiSp~m~---~~~~rI~fv~GDa~dl 276 (419)
T 3sso_A 205 HYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG-----QIYGLDIMDKSH---VDELRIRTIQGDQNDA 276 (419)
T ss_dssp HHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC-----EEEEEESSCCGG---GCBTTEEEEECCTTCH
T ss_pred HHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC-----EEEEEECCHHHh---hcCCCcEEEEeccccc
Confidence 4555554222234689999999 78888877764 44 4555553 3442 1222255555555554
Q ss_pred CCC------CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC------------------hhHHHHHHH
Q 005981 577 DTY------PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------------IDVMDELQE 632 (666)
Q Consensus 577 ~~y------p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~------------------~~~~~~~~~ 632 (666)
+.. +.+||+|.|++. +. -.+....|.|+.|+|||||+++|.|- ..+++.+++
T Consensus 277 pf~~~l~~~d~sFDlVisdgs--H~--~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~ 352 (419)
T 3sso_A 277 EFLDRIARRYGPFDIVIDDGS--HI--NAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKS 352 (419)
T ss_dssp HHHHHHHHHHCCEEEEEECSC--CC--HHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHH
T ss_pred chhhhhhcccCCccEEEECCc--cc--chhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHH
Confidence 332 379999999753 22 23457899999999999999999743 246889999
Q ss_pred HHHhcCcEE
Q 005981 633 IGKAMGWHV 641 (666)
Q Consensus 633 i~~~l~W~~ 641 (666)
+++.++|.-
T Consensus 353 l~D~l~~~~ 361 (419)
T 3sso_A 353 LIDAIQHQE 361 (419)
T ss_dssp HHHHHTGGG
T ss_pred HHHHhcccc
Confidence 999999864
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.4e-07 Score=98.44 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=76.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC--
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-- 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~-- 331 (666)
.+++.+.+.+.. ....+|||+|||+|.++..|+.. +|+|+|+++.++..|+. .+...++. ..+...|+..
T Consensus 273 ~l~~~~~~~l~~----~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 273 KMVARALEWLDV----QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHTC----CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHhhcC----CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHHHh
Confidence 455555555531 34578999999999999999876 89999999999988874 44455554 3455555544
Q ss_pred --CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 --LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 --Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++.+++||+|++..-... ...++..+. .++|++.++++..
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g----~~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAG----AAGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTC----CHHHHHHHH-HHCCSEEEEEESC
T ss_pred hhhhhhcCCCCEEEECCCCcc----HHHHHHHHH-hcCCCeEEEEECC
Confidence 3456678999997543221 124555544 4799999998853
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-07 Score=90.08 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=79.5
Q ss_pred eeEeeccccchHHHHHHhhC-C-CceEEEEeeccCC-CCChhHHHhcc----ccccccccCCC-C--CCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-K-FDCWVMNVVPVSG-FNTLPVIYDRG----LIGVMHDWCEP-F--DTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~-~~vwvmnv~~~~~-~~~l~~~~erG----lig~~~~~ce~-~--~~yp~tyDliha~ 589 (666)
.+|||+|||.|.++.+|++. | . .|+.+|. +.+++.+.++. -+...+.-.+. . ..++.+||+|.+.
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKG-----IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTS-----EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred CEEEEEcccCCHHHHHHHHHcCCc-----EEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence 36999999999999999987 4 3 4555553 45666555432 13233322222 0 1234789998733
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE----e--Ch---h--HHHHHHHHHHhcCcEEEEEeccCCCCCceEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR----D--SI---D--VMDELQEIGKAMGWHVTLRETAEGPHASYRILT 658 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~----d--~~---~--~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~ 658 (666)
..+.-....+|.++.|+|||||++++. . .. . ..+.++ ++....++......-+.-.....+++
T Consensus 151 -----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~ 224 (230)
T 1fbn_A 151 -----VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFV 224 (230)
T ss_dssp -----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEE
T ss_pred -----cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEE
Confidence 111112257799999999999999994 1 10 0 125666 67777777654332222134457788
Q ss_pred EEeC
Q 005981 659 ADKR 662 (666)
Q Consensus 659 ~~k~ 662 (666)
++|+
T Consensus 225 ~~k~ 228 (230)
T 1fbn_A 225 GIWE 228 (230)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8874
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-07 Score=98.59 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
...+|||+|||+|.++..|++. +|+|+|+++.++..++.+ +...++...+...|+.++.. .+||+|++......
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n-~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g- 365 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRN-VEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG- 365 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC-
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc-
Confidence 3478999999999999999876 899999999999888754 44455554455556666542 28999997543211
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
....++..+ +.|+|||.++++..
T Consensus 366 --~~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 366 --LHPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp --SCHHHHHHH-HHHCCSEEEEEESC
T ss_pred --hHHHHHHHH-HhcCCCcEEEEECC
Confidence 122455555 45999999999853
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.1e-07 Score=92.64 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=79.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc-----cc--ccccc-ccCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR-----GL--IGVMH-DWCEPFDT 578 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er-----Gl--ig~~~-~~ce~~~~ 578 (666)
.+.+..+ .+|||+|||.|+++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+ |..+ .
T Consensus 105 ~~~~~~~--~~VLD~G~G~G~~~~~la~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~ 174 (275)
T 1yb2_A 105 RCGLRPG--MDILEVGVGSGNMSSYILYALNGKG-----TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---F 174 (275)
T ss_dssp -CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSS-----EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---C
T ss_pred HcCCCCc--CEEEEecCCCCHHHHHHHHHcCCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---c
Confidence 3444444 36999999999999999886 44 5666664 5677776665 54 33333 3322 2
Q ss_pred CC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHhcCcEEE
Q 005981 579 YP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVT 642 (666)
Q Consensus 579 yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~l~W~~~ 642 (666)
++ .+||+|.+. . -+...+|.++.|+|||||++++.+... ..+.+.+.++...|...
T Consensus 175 ~~~~~fD~Vi~~-----~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 175 ISDQMYDAVIAD-----I---PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp CCSCCEEEEEEC-----C---SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred CcCCCccEEEEc-----C---cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 34 789999983 1 233589999999999999999987654 66777777777777653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=90.94 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=69.1
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPR 581 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~ 581 (666)
.+.+.+..+ ..|||+|||.|.++..|++.+. +|+.+|. +.+++.+.++ |+ +.+.+...+....-..
T Consensus 70 ~~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 142 (210)
T 3lbf_A 70 TELLELTPQ--SRVLEIGTGSGYQTAILAHLVQ-----HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARA 142 (210)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHhcCCCCC--CEEEEEcCCCCHHHHHHHHhCC-----EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence 344555444 3599999999999999999866 5555653 5677766654 44 4444433322222237
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
+||+|.+...+.+..+ ++.|+|||||++++.-..
T Consensus 143 ~~D~i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 143 PFDAIIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CEEEEEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred CccEEEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 9999999977766543 688999999999997543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-07 Score=90.50 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=63.7
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCCCCCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFDTYPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~~yp~tyDlih 587 (666)
.+|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+... +.++..+. ||+|.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS-----RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILF 131 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC-----EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEE
Confidence 46999999999999999876 44 4555553 4566665543 44 44443332 22244457 99999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++. .......++.++.|+|||||.+++.|
T Consensus 132 ~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 132 MDC------DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EET------TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EcC------ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 872 23456799999999999999999964
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=89.49 Aligned_cols=118 Identities=9% Similarity=0.059 Sum_probs=80.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-------cc---cccccccCCCCC------CC-CC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-------GL---IGVMHDWCEPFD------TY-PR 581 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-------Gl---ig~~~~~ce~~~------~y-p~ 581 (666)
.+|||+|||.|.++..|+++.-. .+|+.+|. +.+++.+.++ |+ +.+++...+.+. .+ +.
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~~---~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLEK---AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCTT---EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CEEEEeCChHhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 47999999999999999987311 35666764 5666666553 33 445555544441 23 37
Q ss_pred ccceEEeccccccC---------------CCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEE
Q 005981 582 TYDLLHAAGLFSVE---------------SKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 582 tyDliha~~~f~~~---------------~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~ 641 (666)
+||+|.++--|... ...+.++.++.++.|+|||||++++--..+....+.++++.- |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 99999997443321 234568899999999999999999987777777777777663 653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-07 Score=89.41 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=74.1
Q ss_pred ccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc--ccccccccCCCCCC--CC-CccceE
Q 005981 513 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG--LIGVMHDWCEPFDT--YP-RTYDLL 586 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG--lig~~~~~ce~~~~--yp-~tyDli 586 (666)
+++.| ..|||+|||..+ +| ++.|++.+.+|- -+.+.+.-.+.++. ++ .+||+|
T Consensus 9 g~~~g--~~vL~~~~g~v~-------------------vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 9 GISAG--QFVAVVWDKSSP-------------------VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TCCTT--SEEEEEECTTSC-------------------HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCCC--CEEEEecCCcee-------------------eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEE
Confidence 34445 459999998521 34 356777777763 24444444444443 34 899999
Q ss_pred EeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEEeChh----------HHHHHHHHHHhcCcEEEEEe
Q 005981 587 HAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 587 ha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------~~~~~~~i~~~l~W~~~~~~ 645 (666)
.|..++.+. .+ ...+|.|+.|+|||||++++.+... ..+.+...++.-.+ +.+..
T Consensus 68 ~~~~~l~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~ 133 (176)
T 2ld4_A 68 LSGLVPGSTTLH---SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKE 133 (176)
T ss_dssp EECCSTTCCCCC---CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEE
T ss_pred EECChhhhcccC---HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeec
Confidence 999888776 43 4799999999999999999975421 15778888887777 55443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-07 Score=97.16 Aligned_cols=100 Identities=13% Similarity=0.061 Sum_probs=73.5
Q ss_pred ceeeEeeccccc---hHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCC----------C
Q 005981 518 KLRNVLDMRAGF---GGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPF----------D 577 (666)
Q Consensus 518 ~iRnvlD~g~G~---Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~----------~ 577 (666)
.++.|||+|||+ |.+...+... +. .|+.+|. +.++..+.++ +-+.+.+...+.. .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~-----~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDA-----RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTC-----EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCC-----EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhc
Confidence 467899999999 9887766553 34 5667774 6788887765 2233343332211 1
Q ss_pred CCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 578 TYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 578 ~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.+| .+||+|.+..+|.+..+. ....+|.|+.|+|||||+++|.+.
T Consensus 152 ~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 244 589999999999988765 678999999999999999999854
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-07 Score=95.79 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=73.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc-------cc-cccc--cccCCCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-------GL-IGVM--HDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er-------Gl-ig~~--~~~ce~~~~yp~tyDliha~ 589 (666)
..|||+|||.|+|+.+|++++ .|+.+-+.+. +..+.++ |. +-+. ....+.++ +.+||+|.|+
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~-~V~gVD~s~m-----~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd 155 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQP-NVREVKAYTL-----GTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD 155 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTST-TEEEEEEECC-----CCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred CEEEEeccCCCHHHHHHHHcC-CEEEEECchh-----hhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence 469999999999999999984 5666666663 1111111 11 2233 33333333 4899999998
Q ss_pred cccccCCCC-CC---HHHHHHHhhhcccCCe--EEEEEe----ChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEE
Q 005981 590 GLFSVESKR-CN---MSTIMLEMDRMLRPGG--HVYIRD----SIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 659 (666)
Q Consensus 590 ~~f~~~~~~-c~---~~~~l~E~dRiLRPgG--~~ii~d----~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~ 659 (666)
.. ....+. -+ ...+|.++.|+||||| .|++.. ..++++.++.+-+.+. .+.+...-.-....|.+++|
T Consensus 156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~f~-~v~v~P~~sR~~s~E~y~v~ 233 (276)
T 2wa2_A 156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQARFG-GGLIRVPLSRNSTHEMYFVS 233 (276)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEES
T ss_pred CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHHcC-CEEEEcCCCCCcchheEEec
Confidence 55 222111 00 0137899999999999 999863 2322333444333221 22222111112346777777
Q ss_pred Ee
Q 005981 660 DK 661 (666)
Q Consensus 660 ~k 661 (666)
.+
T Consensus 234 ~~ 235 (276)
T 2wa2_A 234 GI 235 (276)
T ss_dssp SC
T ss_pred cc
Confidence 54
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-07 Score=92.75 Aligned_cols=124 Identities=13% Similarity=0.143 Sum_probs=79.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccCCCC-CCC-CCc-cceEEe
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWCEPF-DTY-PRT-YDLLHA 588 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~ce~~-~~y-p~t-yDliha 588 (666)
.|||+|||+|.++.+++.++. -.|+.+|. +.+++.+.++ |+ +.+++..++.+ ... +.+ ||+|.+
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQA----KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTC----SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred eEEEcCCccCHHHHHHHHccC----CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 599999999999998887763 25777774 5777777654 33 33444333332 222 378 999999
Q ss_pred ccccccCCCCCCHHHHHHHh--hhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 589 AGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+..|. .-....++.++ .|+|||||.+++...... +... .-.|..... ..+| ...+.+.+|
T Consensus 132 ~~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~~~--~~~~~~~~~-~~yG---~~~~~~~~~ 193 (201)
T 2ift_A 132 DPPFH----FNLAEQAISLLCENNWLKPNALIYVETEKDK---PLIT--PENWTLLKE-KTTG---IVSYRLYQN 193 (201)
T ss_dssp CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS---CCCC--CTTEEEEEE-EEET---TEEEEEEEE
T ss_pred CCCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCCC---Cccc--cchhHHHHH-HhcC---CEEEEEEec
Confidence 86654 22356888888 789999999999755443 1111 124665432 2233 456666665
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.5e-07 Score=93.61 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=59.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHH-h-ccc--cccccccCCCCCCCCCccceEEeccccccC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIY-D-RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~-e-rGl--ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
..|||+|||.|+++.+|++++ .|..+-+..+.++.++..+. + .|. +.+..+ .+.+..-+.+||+|.|+..+. .
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~-~ 160 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGES-S 160 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCC-C
T ss_pred CEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccc-c
Confidence 469999999999999999985 46655552222222221111 1 111 333333 111211137999999987664 2
Q ss_pred CCC-CC---HHHHHHHhhhcccCCeEEEEE
Q 005981 596 SKR-CN---MSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 596 ~~~-c~---~~~~l~E~dRiLRPgG~~ii~ 621 (666)
... -+ ...+|.++.|+|||||.|++.
T Consensus 161 g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 161 PNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 211 00 114789999999999999996
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-07 Score=100.94 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC-CCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp-f~d~sFDlVv~s~ 346 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+ +...|+.. .+...|...++ ..+++||+|++..
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n-~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSEN-IERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH-HHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 4579999999999888777643 799999999988777644 44456554 33344544443 2357899999632
Q ss_pred c----c-c--------ccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 C----R-I--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~----l-~--------h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. . + .|..+ ...+|.++.++|||||.++++|-
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 0 0 11111 12678999999999999999974
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-07 Score=92.05 Aligned_cols=131 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCCCCC----Ccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFDTYP----RTY 583 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~~yp----~ty 583 (666)
.+|||+|||.|+++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+.-. +.++.++ .+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG-----RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 46999999999999999987 44 5566663 4566665543 55 43443222 2122221 579
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh------------HHHHHHHH----HHhcCcEEEEEecc
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------VMDELQEI----GKAMGWHVTLRETA 647 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~------------~~~~~~~i----~~~l~W~~~~~~~~ 647 (666)
|+|.++... -....++.++.|+|||||++++.+..- ....++++ ...=+|.+.....-
T Consensus 135 D~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 208 (223)
T 3duw_A 135 DFIFIDADK------QNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV 208 (223)
T ss_dssp SEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CEEEEcCCc------HHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 999987431 234689999999999999999864321 12333333 33446666655430
Q ss_pred CCCCCceEEEEEEeC
Q 005981 648 EGPHASYRILTADKR 662 (666)
Q Consensus 648 ~~~~~~e~~l~~~k~ 662 (666)
+..+...+++++|+
T Consensus 209 -~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 209 -GSKGYDGFIMAVVK 222 (223)
T ss_dssp -ETTEEEEEEEEEEC
T ss_pred -CCCCCCeeEEEEEe
Confidence 11124678888764
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-07 Score=96.54 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=82.3
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEecccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
+|||+|||+|.++.+|++.+-. .+|+.+|. +.+++.+.++ |+ +.+.+..+..+ .+.+||+|.++..|.+
T Consensus 199 ~VLDlGcG~G~~~~~la~~~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSPK---IRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFHD 273 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCTT---CBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT--CCSCEEEEEECCCCCS
T ss_pred eEEEecCccCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc--ccCCeeEEEECCCccc
Confidence 6999999999999999987511 14555653 4566666553 44 23333333222 2589999999988765
Q ss_pred CC--CCCCHHHHHHHhhhcccCCeEEEEEeCh--hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 595 ES--KRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 595 ~~--~~c~~~~~l~E~dRiLRPgG~~ii~d~~--~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.. .......++.++.|+|||||.++|.... .....++++... ++....+ ..-+|+.++|.
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~--~~~~~~~------~gf~v~~~~k~ 337 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF--HEVIAQT------GRFKVYRAIMT 337 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC--CEEEEEC------SSEEEEEEEC-
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc--eEEEeeC------CCEEEEEEEeC
Confidence 32 1123468999999999999999997433 234445555442 3333222 25788888763
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.9e-07 Score=89.96 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=78.8
Q ss_pred cCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCC----hhHHHhc-cccccccccCCCC--CCCCCccc
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNT----LPVIYDR-GLIGVMHDWCEPF--DTYPRTYD 584 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~----l~~~~er-Glig~~~~~ce~~--~~yp~tyD 584 (666)
++.| ..|||+|||+|+++.+|++. |-.- .|+.+|. +.+ ++.+.+| ++.-+..|-.+.. ...+..||
T Consensus 74 l~~g--~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 74 IRKG--TKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CCTT--CEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEE
T ss_pred CCCC--CEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceE
Confidence 5555 35999999999999998874 1000 3445553 333 4555555 3333334433221 12247899
Q ss_pred eEEeccccccCCCCCCHHHHHH-HhhhcccCCeEEEEEe----------ChhHHHHHHHHHHhcCcEEEEEeccCCC-CC
Q 005981 585 LLHAAGLFSVESKRCNMSTIML-EMDRMLRPGGHVYIRD----------SIDVMDELQEIGKAMGWHVTLRETAEGP-HA 652 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~-E~dRiLRPgG~~ii~d----------~~~~~~~~~~i~~~l~W~~~~~~~~~~~-~~ 652 (666)
+|.++..+ .+...+|. .+.|+|||||++++.- ..++.+.+...++.-..++....+ -.| +.
T Consensus 149 ~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~-l~p~~~ 221 (232)
T 3id6_C 149 VLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIIN-LDPYDK 221 (232)
T ss_dssp EEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEE-CTTTCS
T ss_pred EEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEec-cCCCcC
Confidence 99987432 33345555 5566999999999861 122334444455555666544322 223 34
Q ss_pred ceEEEEEEeCC
Q 005981 653 SYRILTADKRL 663 (666)
Q Consensus 653 ~e~~l~~~k~~ 663 (666)
..-+++++|++
T Consensus 222 ~h~~v~~~~~~ 232 (232)
T 3id6_C 222 DHAIVLSKYKG 232 (232)
T ss_dssp SCEEEEEEEC-
T ss_pred ceEEEEEEeCC
Confidence 56788888764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-07 Score=95.82 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=65.3
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
..|||+|||.|.++..|++. +. +|+.+| ++.+++.+.+++- +.+...-.+.++.-+.+||+|.+...
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~---- 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI-----TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA---- 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC-----eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC----
Confidence 46999999999999999987 55 455666 3678888888763 33333333444422379999998643
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
...+.|+.|+|||||++++.+.
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred ------hhhHHHHHHhcCCCcEEEEEEc
Confidence 2358999999999999999753
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.1e-07 Score=86.83 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=69.7
Q ss_pred eeEeeccccchHHHHHHhhC-C----------CceEEEEeeccCCCCChhHHHhccccccc-cccCCCCC-------CCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-K----------FDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFD-------TYP 580 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~----------~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~-------~yp 580 (666)
.+|||+|||.|.++.+|+++ | . .|+.+|...+... .+ +..+ +....... .++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~-----~v~~vD~s~~~~~---~~-~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVG-----FVLGVDLLHIFPL---EG-ATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCC-----EEEEECSSCCCCC---TT-CEEECSCCTTSHHHHHHHHHHSG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCc-----eEEEEechhcccC---CC-CeEEEeccCCCHHHHHHHHHhcC
Confidence 46999999999999999987 4 3 3444442211100 11 1111 11111100 123
Q ss_pred -CccceEEeccccccCCCC--------CCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEecc-CC
Q 005981 581 -RTYDLLHAAGLFSVESKR--------CNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETA-EG 649 (666)
Q Consensus 581 -~tyDliha~~~f~~~~~~--------c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~-~~ 649 (666)
++||+|.|+..+...... .....+|.++.|+|||||.+++.+-. +....+...++..--++...... ..
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~ 174 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASR 174 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC---
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccC
Confidence 589999997644332211 01137899999999999999998432 22334444444432223333221 12
Q ss_pred CCCceEEEEEEe
Q 005981 650 PHASYRILTADK 661 (666)
Q Consensus 650 ~~~~e~~l~~~k 661 (666)
....|.+++|..
T Consensus 175 ~~~~e~~~v~~g 186 (196)
T 2nyu_A 175 KESSEVYFLATQ 186 (196)
T ss_dssp -----EEEEEEE
T ss_pred ccCceEEEEeee
Confidence 235678888764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=87.23 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=75.0
Q ss_pred eEeeccccchHHHHHHhhC-C--CceEEEEeeccCC-CCChhHHHhc----cccccccccCCCC---CCCCCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPF---DTYPRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~---~~yp~tyDliha~ 589 (666)
.|||+|||.|.++.+|++. | . .|+.+|. +.+++.+.++ .-+.+.+...+.. ...+.+||+|.++
T Consensus 76 ~vLDlG~G~G~~~~~la~~~~~~~-----~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 76 SVLYLGIASGTTASHVSDIVGWEG-----KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred EEEEEeccCCHHHHHHHHHhCCCe-----EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 6999999999999999876 2 3 3444452 3344443332 1133333332221 2235789999986
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---------h--HHHHHHHHHHhcCcEEEEEeccCCC-CCceEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------D--VMDELQEIGKAMGWHVTLRETAEGP-HASYRIL 657 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---------~--~~~~~~~i~~~l~W~~~~~~~~~~~-~~~e~~l 657 (666)
.. ..-....++.++.|+|||||++++.-.. . ..+.++.+ ..- ++......- .+ ....-++
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~-~~~~~~~~~~ 222 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNL-EPYEKDHALF 222 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEEC-TTTSSSEEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEecc-CcccCCCEEE
Confidence 33 1111235599999999999999995111 1 12456666 443 776543221 22 2345577
Q ss_pred EEEeC
Q 005981 658 TADKR 662 (666)
Q Consensus 658 ~~~k~ 662 (666)
+++|+
T Consensus 223 ~~~~~ 227 (227)
T 1g8a_A 223 VVRKT 227 (227)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 87774
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-07 Score=90.87 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=66.4
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCC-CCCC--CCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEP-FDTY--PRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~-~~~y--p~tyDli 586 (666)
.+|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ |+ +.+.+...+. .+.. +.+||+|
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEA-----TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL 130 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTC-----EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence 36999999999999999987 34 5666664 5677777665 54 4444332222 2222 4789999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+..... ....+|.++.|+|||||.+++.|
T Consensus 131 ~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 131 FIDAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred EECCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 9875432 45799999999999999999974
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-07 Score=90.48 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=68.4
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----ccccccccCCCCCCCCCcc
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----LIGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----lig~~~~~ce~~~~yp~ty 583 (666)
.+.+.+..+. .|||+|||.|.++..|++.+. +|+.+|. +.+++.+.++. -+.+.+...+.....+.+|
T Consensus 63 ~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 63 LDELDLHKGQ--KVLEIGTGIGYYTALIAEIVD-----KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcC-----EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 3444444443 699999999999999999865 5666663 57777777662 2333332222211123789
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
|+|.+..++.+.. .++.|+|||||.+++....
T Consensus 136 D~v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 136 DRVVVWATAPTLL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred cEEEECCcHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence 9999998776543 4789999999999998543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.4e-07 Score=89.02 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=80.9
Q ss_pred eEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc----cccccccC-CCCCCC-CCccceE
Q 005981 521 NVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWC-EPFDTY-PRTYDLL 586 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~c-e~~~~y-p~tyDli 586 (666)
+|||+|||.|..+.+|++. +. .|+.+|. +.+++.+.++ |+ |.+.+.-. +..+.+ +.+||+|
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT-----TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS-----EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 7999999999999999874 33 4566663 4566555442 43 33333222 223334 4899999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------------hHHHHHHHHHHhcCcE----EEEEeccCCC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKAMGWH----VTLRETAEGP 650 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------~~~~~~~~i~~~l~W~----~~~~~~~~~~ 650 (666)
.++.. .-....++.++.|+|||||++++.|.. .....++++.+.+++. +.+....
T Consensus 134 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~g--- 204 (221)
T 3dr5_A 134 FGQVS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLG--- 204 (221)
T ss_dssp EECCC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESST---
T ss_pred EEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeecc---
Confidence 88632 234568999999999999999995321 1233456666666554 4443333
Q ss_pred CCceEEEEEEeCC
Q 005981 651 HASYRILTADKRL 663 (666)
Q Consensus 651 ~~~e~~l~~~k~~ 663 (666)
..+++++|.+
T Consensus 205 ---dGl~~~~~~~ 214 (221)
T 3dr5_A 205 ---AGLTVVTKAL 214 (221)
T ss_dssp ---TCEEEEEECC
T ss_pred ---chHHHHHHHH
Confidence 4589999875
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=88.35 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=78.5
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccc-cccCCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVM-HDWCEPFD 577 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~-~~~ce~~~ 577 (666)
..+++..+ ..|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+. .|..+.++
T Consensus 87 ~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (255)
T 3mb5_A 87 AYAGISPG--DFIVEAGVGSGALTLFLANIVGPEG-----RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE 159 (255)
T ss_dssp HHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTS-----EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred HhhCCCCC--CEEEEecCCchHHHHHHHHHhCCCe-----EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence 34455444 35999999999999999987 44 5666664 5677776665 54 3333 34433322
Q ss_pred CCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcC
Q 005981 578 TYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMG 638 (666)
Q Consensus 578 ~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~ 638 (666)
+.+||+|.++ .-+...++.++.|+|||||.+++.. ..+...++.+.++...
T Consensus 160 --~~~~D~v~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 160 --EENVDHVILD--------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp --CCSEEEEEEC--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred --CCCcCEEEEC--------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 2789999885 2233578999999999999999975 4556777777777766
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.32 E-value=9e-08 Score=89.67 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=64.8
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCC-CCCCC---CccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEP-FDTYP---RTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~-~~~yp---~tyDliha~ 589 (666)
.+|||+|||.|.++.+|++++. +|+.+|. +.+++.+.++ |+ +.+++.-.+. .+..+ .+||+|.++
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW-----EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC-----EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeCCCcCHHHHHHHHCCC-----eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 3599999999999999999976 3677774 5667666553 33 3333333222 11122 389999999
Q ss_pred cccccCCCCCCHHHHHHHhh--hcccCCeEEEEEeC
Q 005981 590 GLFSVESKRCNMSTIMLEMD--RMLRPGGHVYIRDS 623 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~d--RiLRPgG~~ii~d~ 623 (666)
..|. . ..+.++.++. |+|||||.+++...
T Consensus 118 ~~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 118 PPYA--M---DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CCCc--h---hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 7776 2 2346677776 99999999999743
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=89.06 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=64.5
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCCCCChhHHH----hcc-ccccccccCCC--CCCCC
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIY----DRG-LIGVMHDWCEP--FDTYP 580 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~~~~l~~~~----erG-lig~~~~~ce~--~~~yp 580 (666)
++++.|.. |||+|||.|.++.+|++. | .|+...+. +.+++.+. +++ +..+..+-+.+ .+..+
T Consensus 73 l~ikpG~~--VldlG~G~G~~~~~la~~VG~~G-~V~avD~s----~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~ 145 (233)
T 4df3_A 73 LPVKEGDR--ILYLGIASGTTASHMSDIIGPRG-RIYGVEFA----PRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLV 145 (233)
T ss_dssp CCCCTTCE--EEEETCTTSHHHHHHHHHHCTTC-EEEEEECC----HHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTC
T ss_pred cCCCCCCE--EEEecCcCCHHHHHHHHHhCCCc-eEEEEeCC----HHHHHHHHHhhHhhcCeeEEEEeccCcccccccc
Confidence 45777764 999999999999999875 4 24444443 34554443 343 33344444332 12223
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.++|+|.+. +.+.. +...+|.|+.|+|||||.++|.+
T Consensus 146 ~~vDvVf~d--~~~~~---~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 146 EGVDGLYAD--VAQPE---QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CCEEEEEEC--CCCTT---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEEe--ccCCh---hHHHHHHHHHHhccCCCEEEEEE
Confidence 889998875 22222 33689999999999999999963
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=94.58 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=79.3
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----------------CCeEEEeCCcchHHHHHHHHHHHc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------------RNVITMSIAPKDVHENQIQFALER 318 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----------------~~V~gvDiS~~~l~~a~~~~a~~r 318 (666)
+.+++.+.+.+.. ....+|||.|||+|.++..+.+ .+++|+|+++.++..|+.+... +
T Consensus 157 ~~v~~~mv~~l~~----~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l-~ 231 (445)
T 2okc_A 157 RPLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-H 231 (445)
T ss_dssp HHHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHhCC----CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH-h
Confidence 3456666665542 3446899999999988766542 3799999999988777654443 4
Q ss_pred CC---CceEEeecccCCCCCCCCeeEEEeccccccccc-C---------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 319 GA---PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-D---------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 319 g~---~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~-d---------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++ ...+...|+...+.. ..||+|+++..+.+... + ...++..+.++|||||.+++..+
T Consensus 232 g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 232 GIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp TCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 54 334555555444433 48999998765443211 1 12789999999999999998864
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-07 Score=87.91 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=69.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCC-CC-CCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFD-TY-PRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~-~y-p~tyDliha~~ 590 (666)
..|||+|||+|.++.+++++|.. .|+.+|. +.+++.+.++ |+ +.+.+...+.+. .+ +.+||+|.++.
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA----SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC----eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35999999999999988888642 4666663 5667666554 44 444444433322 13 48999999987
Q ss_pred ccccCCCCCCHHHHHHHhhh--cccCCeEEEEEeC
Q 005981 591 LFSVESKRCNMSTIMLEMDR--MLRPGGHVYIRDS 623 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dR--iLRPgG~~ii~d~ 623 (666)
.|.+.. .++..++.++.| +|+|||.+++...
T Consensus 122 p~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 122 PYNVDS--ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CTTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCCcch--hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 665431 245789999999 9999999999754
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.2e-07 Score=96.84 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=66.9
Q ss_pred CCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEecccc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~~f 592 (666)
....+.|||+|||.|.++.+|+++ +..+ +-+|.+.+++.+.++.-+.+. +|..+ .+|.. |+|++..++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~-----~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~p~~-D~v~~~~vl 271 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINA-----INFDLPHVIQDAPAFSGVEHLGGDMFD---GVPKG-DAIFIKWIC 271 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEE-----EEEECHHHHTTCCCCTTEEEEECCTTT---CCCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEE-----EEEehHHHHHhhhhcCCCEEEecCCCC---CCCCC-CEEEEechh
Confidence 345678999999999999999886 3323 333333334333333334443 44433 45654 999999998
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.++.+. +...+|.++.|+|||||+++|.|
T Consensus 272 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 272 HDWSDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GGBCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 877653 23589999999999999999975
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.3e-06 Score=88.41 Aligned_cols=88 Identities=9% Similarity=0.003 Sum_probs=65.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+++.+.+.+.. .+..+|||||||+|.++..|++. +|+++|+++.++..++.... . .....+...|+..+++
T Consensus 37 ~i~~~Iv~~l~~----~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~-~-~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 37 NFVNKAVESANL----TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE-L-YNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH-H-CSSEEEEESCTTTSCG
T ss_pred HHHHHHHHhcCC----CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc-c-CCCeEEEECchhhCCc
Confidence 456677776652 34579999999999999999875 89999999999988765554 2 2234556667888888
Q ss_pred CCCCeeEEEeccccccc
Q 005981 335 PSQAFDLIHCSRCRINW 351 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~ 351 (666)
++.+||.|+++.. .++
T Consensus 111 ~~~~fD~Iv~NlP-y~i 126 (295)
T 3gru_A 111 NKLDFNKVVANLP-YQI 126 (295)
T ss_dssp GGSCCSEEEEECC-GGG
T ss_pred ccCCccEEEEeCc-ccc
Confidence 8788999997643 454
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=94.39 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=74.3
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e 330 (666)
+..++.+.+.+.. ....+|||+|||+|.++..+++ .+++|+|+++.++..+ ....+...|..
T Consensus 25 ~~l~~~~~~~~~~----~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~ 91 (421)
T 2ih2_A 25 PEVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFL 91 (421)
T ss_dssp HHHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGG
T ss_pred HHHHHHHHHhhcc----CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChh
Confidence 4566677777652 2346999999999999888874 2899999999876433 12334455555
Q ss_pred CCCCCCCCeeEEEeccccccccc---------C-------------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTR---------D-------------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~---------d-------------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
... +.+.||+|+++-....... + ...++..+.++|+|||.+++..+
T Consensus 92 ~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 92 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 544 3478999998633222111 1 11568889999999999999865
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.6e-07 Score=96.46 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=65.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEeccccccCC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
....|||+|||.|.++.+|+++.-++. ++.+|.+.+++.+.+..-+.+. +|..+ .+|. ||+|.+..++.++.
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~~~-~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIK---GINFDLPQVIENAPPLSGIEHVGGDMFA---SVPQ-GDAMILKAVCHNWS 281 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCTTT---CCCC-EEEEEEESSGGGSC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCe---EEEeChHHHHHhhhhcCCCEEEeCCccc---CCCC-CCEEEEecccccCC
Confidence 456799999999999999998742322 2323322333333222113333 44433 3555 99999999998876
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+. ....+|.++.|+|||||+++|.|
T Consensus 282 d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 DE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 53 22489999999999999999974
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.28 E-value=5.2e-07 Score=89.27 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=80.7
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCCCCC-----Cc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFDTYP-----RT 582 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~~yp-----~t 582 (666)
++|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+... +.++.++ .+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGA-----RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTC-----EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCC-----EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 57999999999999999984 44 4566663 5667666553 54 44443332 3233344 69
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh--HHHHHHHHHHhcCcEEEEEec-cCCCCCceEEEEE
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID--VMDELQEIGKAMGWHVTLRET-AEGPHASYRILTA 659 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~--~~~~~~~i~~~l~W~~~~~~~-~~~~~~~e~~l~~ 659 (666)
||+|.++....++.+ ...++.++ |+|||||.+++.|... ...-++.+.+.=+|+...... .........+.++
T Consensus 135 fD~V~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~ 210 (221)
T 3u81_A 135 LDMVFLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKA 210 (221)
T ss_dssp CSEEEECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEE
Confidence 999998854443321 12566677 9999999999976431 122223333344566665432 1112234567777
Q ss_pred EeC
Q 005981 660 DKR 662 (666)
Q Consensus 660 ~k~ 662 (666)
+++
T Consensus 211 ~~~ 213 (221)
T 3u81_A 211 IYQ 213 (221)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-08 Score=100.24 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=69.4
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~ 335 (666)
.++.+.+.+.. ....+|||||||+|.++..+++. +|+|+|+++.++..++.+.. ......+...|+..++++
T Consensus 17 ~~~~i~~~~~~----~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 17 VLNQIIKQLNL----KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp THHHHHHHCCC----CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC
T ss_pred HHHHHHHhcCC----CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc
Confidence 35566666542 34578999999999999888865 89999999988755432221 111234555577788776
Q ss_pred C-CCeeEEEecccccccc-----------cChHHHH----HHHHHhccCCeEEEEE
Q 005981 336 S-QAFDLIHCSRCRINWT-----------RDDGILL----LEVNRMLRAGGYFAWA 375 (666)
Q Consensus 336 d-~sFDlVv~s~~l~h~~-----------~d~~~~L----~el~RvLkPGG~lv~s 375 (666)
+ ++| .|+++.. .+.. .....++ ..+.|+|+|||.+.+.
T Consensus 91 ~~~~f-~vv~n~P-y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 91 NKQRY-KIVGNIP-YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CSSEE-EEEEECC-SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred cCCCc-EEEEeCC-ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 4 689 6665532 2211 1222333 5577888888776554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=92.33 Aligned_cols=124 Identities=17% Similarity=0.084 Sum_probs=80.5
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp 580 (666)
.+++..+. .|||+|||.|+++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+...+.++.++
T Consensus 113 ~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~-----~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~ 185 (315)
T 1ixk_A 113 ALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDG-----VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELN 185 (315)
T ss_dssp HHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCS-----EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGC
T ss_pred HhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCC-----EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccc
Confidence 44555553 5999999999999999874 12 4666663 5666666554 55 445544444444446
Q ss_pred CccceEEeccccccCC---CC------CC----------HHHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHhc
Q 005981 581 RTYDLLHAAGLFSVES---KR------CN----------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAM 637 (666)
Q Consensus 581 ~tyDliha~~~f~~~~---~~------c~----------~~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~l 637 (666)
.+||+|.++--.+..+ .. -. ...+|.++.|+|||||.++++. ..+....++.++++.
T Consensus 186 ~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~ 265 (315)
T 1ixk_A 186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF 265 (315)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHS
T ss_pred ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcC
Confidence 7899999853322111 00 00 1388999999999999999962 234455677777776
Q ss_pred CcEE
Q 005981 638 GWHV 641 (666)
Q Consensus 638 ~W~~ 641 (666)
.++.
T Consensus 266 ~~~~ 269 (315)
T 1ixk_A 266 DVEL 269 (315)
T ss_dssp SEEE
T ss_pred CCEE
Confidence 6554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-06 Score=87.39 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=80.2
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccc-cccCCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVM-HDWCEPFD 577 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~-~~~ce~~~ 577 (666)
..+.+..+. +|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ |+ +.+. .|..+.
T Consensus 106 ~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 176 (277)
T 1o54_A 106 MMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSG-----KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-- 176 (277)
T ss_dssp HHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTC-----EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--
T ss_pred HHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCc-----EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--
Confidence 344555443 6999999999999999887 33 5666763 5677777665 44 3333 333332
Q ss_pred CCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEE
Q 005981 578 TYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 578 ~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~ 641 (666)
++ .+||+|.++. -+...+|.++.|+|||||.+++.+. .+...++.+.++...|..
T Consensus 177 -~~~~~~D~V~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 177 -FDEKDVDALFLDV--------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp -CSCCSEEEEEECC--------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred -ccCCccCEEEECC--------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 44 7899999851 1235889999999999999999876 346677777777777764
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=94.46 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=77.8
Q ss_pred HHHHHHHHhcc----cCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCCh----hHHHhccc---cccccc
Q 005981 503 EIIESYVRALH----WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTL----PVIYDRGL---IGVMHD 571 (666)
Q Consensus 503 ~~v~~Y~~~l~----~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l----~~~~erGl---ig~~~~ 571 (666)
.|...|.+.+- .-.|+ .|||+|||+|.++...++.|+. .|+.++...++ +++.+.|+ |.+++.
T Consensus 66 ~Rt~aY~~Ai~~~~~~~~~k--~VLDvG~GtGiLs~~Aa~aGA~----~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~ 139 (376)
T 4hc4_A 66 VRTDAYRLGILRNWAALRGK--TVLDVGAGTGILSIFCAQAGAR----RVYAVEASAIWQQAREVVRFNGLEDRVHVLPG 139 (376)
T ss_dssp HHHHHHHHHHHTTHHHHTTC--EEEEETCTTSHHHHHHHHTTCS----EEEEEECSTTHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHHHHhCHHhcCCC--EEEEeCCCccHHHHHHHHhCCC----EEEEEeChHHHHHHHHHHHHcCCCceEEEEee
Confidence 34445655432 22344 4999999999998877877753 34445543444 44455677 778888
Q ss_pred cCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 572 WCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 572 ~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
-.|.+. .|..+|+|-|.-+-..+.....++.++...+|+|||||.+|-+
T Consensus 140 ~~~~~~-lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 140 PVETVE-LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CTTTCC-CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeeec-CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 777764 5789999998644444444456789999999999999998863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-07 Score=88.88 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=65.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCC-CCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEP-FDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~-~~~yp~tyDliha~~ 590 (666)
.+|||+|||.|.++.+|+++|. .+|+.+|. +.+++.+.++ |+ +.+.+.-.+. ++..+..||+|.++.
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM----SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC----CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 3699999999999999998853 25677774 5677666553 33 3333322222 233457899999986
Q ss_pred ccccCCCCCCHHHHHHHhh--hcccCCeEEEEEeCh
Q 005981 591 LFSVESKRCNMSTIMLEMD--RMLRPGGHVYIRDSI 624 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~d--RiLRPgG~~ii~d~~ 624 (666)
.|.. ...+.++.++. |+|+|||.+++....
T Consensus 109 ~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 6532 22356777776 999999999997443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=7.8e-07 Score=87.91 Aligned_cols=126 Identities=18% Similarity=0.124 Sum_probs=81.1
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCCCCC-----Cc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFDTYP-----RT 582 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~~yp-----~t 582 (666)
.+|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+... +.+...+ .+
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADG-----RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC-----EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 47999999999999999985 33 4555653 5666666554 54 33333221 1111121 68
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------------hHHHHHHHH----HHhcCcEEEEEec
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEI----GKAMGWHVTLRET 646 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------~~~~~~~~i----~~~l~W~~~~~~~ 646 (666)
||+|.++.. ......++.++-|+|||||.+++.+.. .....++++ .+.=++++.+...
T Consensus 146 ~D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 219 (229)
T 2avd_A 146 FDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 219 (229)
T ss_dssp EEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred ccEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec
Confidence 999998732 345578999999999999999996421 123333333 4445577776655
Q ss_pred cCCCCCceEEEEEEeC
Q 005981 647 AEGPHASYRILTADKR 662 (666)
Q Consensus 647 ~~~~~~~e~~l~~~k~ 662 (666)
.+ .+++++|.
T Consensus 220 ~d------Gl~~~~k~ 229 (229)
T 2avd_A 220 GD------GLTLAFKI 229 (229)
T ss_dssp TT------CEEEEEEC
T ss_pred CC------ceEEEEEC
Confidence 44 48888874
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.3e-07 Score=88.53 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=80.8
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCC----------
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFD---------- 577 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~---------- 577 (666)
.+|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ |+ +.+.+... +..+
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDG-----KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTC-----EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 36999999999999999887 34 4555553 4566666554 44 32322211 1111
Q ss_pred ---CC--C-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC------------hhHHHHH----HHHHH
Q 005981 578 ---TY--P-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------IDVMDEL----QEIGK 635 (666)
Q Consensus 578 ---~y--p-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~------------~~~~~~~----~~i~~ 635 (666)
.| + .+||+|.+... .-.+..++.++.|+|||||.+++.+. ......+ +.+.+
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYN 210 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhh
Confidence 11 2 68999998732 22346889999999999999999751 1122233 33445
Q ss_pred hcCcEEEEEeccCCCCCceEEEEEEeCC
Q 005981 636 AMGWHVTLRETAEGPHASYRILTADKRL 663 (666)
Q Consensus 636 ~l~W~~~~~~~~~~~~~~e~~l~~~k~~ 663 (666)
.-++.+......+| +.+++|++
T Consensus 211 ~~~~~~~~~p~~~g------~~~~~~~~ 232 (239)
T 2hnk_A 211 DSLVDVSLVPIADG------VSLVRKRL 232 (239)
T ss_dssp CTTEEEEEECSTTC------EEEEEECC
T ss_pred CCCeEEEEEEcCCc------eEeeeehh
Confidence 55677777665444 88888875
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=91.95 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=84.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc------c----cccccccCCCCCC--CCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG------L----IGVMHDWCEPFDT--YPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG------l----ig~~~~~ce~~~~--yp~tyDli 586 (666)
.+|||+|||.|+++.+|++.. ++ ..|+.+|. +.+++.+.++- + +.+.......+.. -+++||+|
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~-~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHG-TV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCT-TC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCC-CC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 679999999999999999872 11 24555553 46666665532 1 3333332222221 14799999
Q ss_pred EeccccccCCCCCC-HHHHHHHhhhcccCCeEEEEEeCh-----hHHHHHHHHHHhcCcEE-EEEeccCCC---CCceEE
Q 005981 587 HAAGLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHV-TLRETAEGP---HASYRI 656 (666)
Q Consensus 587 ha~~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~ii~d~~-----~~~~~~~~i~~~l~W~~-~~~~~~~~~---~~~e~~ 656 (666)
.++.........-. -..++.++.|+|||||.+++.... .....+.+.+++..+.. ..... .-| .+...+
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~-~vP~yp~g~w~f 252 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALM-HVPTYPCGSIGT 252 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEEC-CCTTSTTSCCEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEe-ecccccCcceEE
Confidence 99643322111111 158899999999999999996322 35666777777776653 33322 212 345678
Q ss_pred EEEEeC
Q 005981 657 LTADKR 662 (666)
Q Consensus 657 l~~~k~ 662 (666)
++|.|.
T Consensus 253 ~~as~~ 258 (304)
T 3bwc_A 253 LVCSKK 258 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 888885
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.7e-07 Score=95.03 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=67.0
Q ss_pred CCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEecccc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~~f 592 (666)
......|||+|||.|.++.+|+++ +..+.+ +|.+.+++.+.++.-+.+. +|..+ .+|.. |+|.+..++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~-----~D~~~~~~~a~~~~~v~~~~~D~~~---~~p~~-D~v~~~~vl 269 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVN-----FDLPHVISEAPQFPGVTHVGGDMFK---EVPSG-DTILMKWIL 269 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE-----EECHHHHTTCCCCTTEEEEECCTTT---CCCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEE-----ecCHHHHHhhhhcCCeEEEeCCcCC---CCCCC-CEEEehHHh
Confidence 345678999999999999999885 332333 3333334333333334444 44433 45654 999999998
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.++.+. +...+|.++.|+|||||+++|.|
T Consensus 270 h~~~d~-~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 270 HDWSDQ-HCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp GGSCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 887643 33689999999999999999974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=91.51 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=66.4
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC-C--CceEEEEeeccCC-CCChhHHHhcc-----------------ccccc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSG-FNTLPVIYDRG-----------------LIGVM 569 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~-~~~l~~~~erG-----------------lig~~ 569 (666)
.+.+..+. .|||+|||.|.++.+|++. | . .|+.+|. +.+++.+.++. -+.+.
T Consensus 100 ~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 100 MMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQG-----RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTC-----EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred hcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCc-----eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34455453 6999999999999999886 4 3 4555553 45666665531 14444
Q ss_pred cccCCCC-CCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHH
Q 005981 570 HDWCEPF-DTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGK 635 (666)
Q Consensus 570 ~~~ce~~-~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~ 635 (666)
+.-.+.. ..++ .+||+|.++.. ....++.++.|+|||||.+++... .+.+.++.+.++
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~--------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 233 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIR 233 (336)
T ss_dssp ESCTTCCC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ECChHHcccccCCCCeeEEEECCC--------CHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 3333332 2344 68999998521 113478999999999999998754 333444444344
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-06 Score=88.14 Aligned_cols=90 Identities=18% Similarity=0.056 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCC------ch-hHHHhcc--CCeEEEeCCcchHHHHHHHHHHHcCCCceE-EeecccCCCCCCCCeeEE
Q 005981 273 HHIRVVMDAGCGV------AS-FGAYLLP--RNVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLPYPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGt------G~-~a~~L~~--~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~-~~~d~e~Lpf~d~sFDlV 342 (666)
.++.+|||+|||+ |+ .+..+.. .+|+|+|+++. + .+ ..+ ...|+..++++ ++||+|
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----------~~--v~~~i~gD~~~~~~~-~~fD~V 127 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----------SD--ADSTLIGDCATVHTA-NKWDLI 127 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----------CS--SSEEEESCGGGCCCS-SCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----------CC--CEEEEECccccCCcc-CcccEE
Confidence 3457999999944 64 2333333 38999999986 1 12 234 55677777765 789999
Q ss_pred Eecccccccc-----c------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 343 HCSRCRINWT-----R------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 343 v~s~~l~h~~-----~------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+.. .++. + ....+++++.|+|||||.|++..+
T Consensus 128 vsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 128 ISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp EECCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEcCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 97533 2221 1 123789999999999999999764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4.9e-07 Score=91.19 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=67.8
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc-------cc------------------------
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR-------GL------------------------ 565 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er-------Gl------------------------ 565 (666)
..|||+|||+|.++..|++. . . ..+|+.+|. +.+++.+.++ |+
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~-~--~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRR-S--LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGG-G--EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhcc-C--CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 56999999999999999876 1 1 136777773 5666666532 32
Q ss_pred ----cc-------------cc-cccCCCCCC----CCCccceEEeccccccCCCC------CCHHHHHHHhhhcccCCeE
Q 005981 566 ----IG-------------VM-HDWCEPFDT----YPRTYDLLHAAGLFSVESKR------CNMSTIMLEMDRMLRPGGH 617 (666)
Q Consensus 566 ----ig-------------~~-~~~ce~~~~----yp~tyDliha~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~ 617 (666)
+. +. +|..+.+.. -...||+|.|+-.|...... -....++.++.|+|||||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 22 33 333322210 12489999998666543321 2345899999999999999
Q ss_pred EEEEeChh
Q 005981 618 VYIRDSID 625 (666)
Q Consensus 618 ~ii~d~~~ 625 (666)
++|.+...
T Consensus 210 l~~~~~~~ 217 (250)
T 1o9g_A 210 IAVTDRSR 217 (250)
T ss_dssp EEEEESSS
T ss_pred EEEeCcch
Confidence 99976543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-08 Score=98.96 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=67.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
..|||+|||.|+++.+|++.|. .|+.+|. +.++..+.++ |+ +.+.+...+.++ -+.+||+|.++..
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGM-----RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP 153 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC
T ss_pred CEEEECccccCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC
Confidence 3599999999999999999976 5566663 5666665543 43 444444333333 2379999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|.+.... ...+.|+.|+|||||++++..
T Consensus 154 ~~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 8775543 236779999999999988764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.23 E-value=8.6e-07 Score=94.20 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=77.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccCCCCCCC----CCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWCEPFDTY----PRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~ce~~~~y----p~tyDli 586 (666)
..|||+|||+|+|+.++++.|. .|+.+|. +.+++.+.++ |+ +.+++..++.+... ..+||+|
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga-----~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA-----EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CcEEEcccccCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 3699999999999999999876 6777774 5677766554 43 33444333322211 3689999
Q ss_pred Eeccc-cccCCC------CCCHHHHHHHhhhcccCCeEEEEEeC-------hhHHHHHHHHHHhcCcEEEE
Q 005981 587 HAAGL-FSVESK------RCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 587 ha~~~-f~~~~~------~c~~~~~l~E~dRiLRPgG~~ii~d~-------~~~~~~~~~i~~~l~W~~~~ 643 (666)
.++-- |..... .-++..++.++.|+|||||++++... ....+.+++.++....++..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 88532 221110 11246889999999999999888531 22345556566677777653
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=82.34 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=77.8
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc---ccccc-ccCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTY 579 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~-~~ce~~~~y 579 (666)
...+++..+. +|||+|||.|.++.+|++.+. +|+.+| ++.+++.+.++ |+ +.+.+ +..+.+ .-
T Consensus 84 ~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~ 155 (248)
T 2yvl_A 84 ALKLNLNKEK--RVLEFGTGSGALLAVLSEVAG-----EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VP 155 (248)
T ss_dssp HHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS-----EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CC
T ss_pred HHhcCCCCCC--EEEEeCCCccHHHHHHHHhCC-----EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cC
Confidence 3444554443 699999999999999998754 566676 35677777665 43 33333 332222 01
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWH 640 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~ 640 (666)
+..||+|.+. .-+...++.++.|+|||||.+++... .+...++.+.++.. |.
T Consensus 156 ~~~~D~v~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 156 EGIFHAAFVD--------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp TTCBSEEEEC--------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred CCcccEEEEC--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 2789999874 12345889999999999999999876 45666666666554 54
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=86.38 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=76.0
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc-----c-c---cccccccCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR-----G-L---IGVMHDWCEPF 576 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er-----G-l---ig~~~~~ce~~ 576 (666)
..+.+..+. .|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ | + +.+.+...+..
T Consensus 93 ~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 93 HEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAG-----QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTS-----EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCC-----EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 344555443 5999999999999999885 34 5666664 5677776655 4 2 33443333333
Q ss_pred CCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHh-cCcE
Q 005981 577 DTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKA-MGWH 640 (666)
Q Consensus 577 ~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~-l~W~ 640 (666)
..-+.+||+|.+.. -+...+|.++.|+|||||++++... .+.+.++...++. .+|.
T Consensus 166 ~~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 166 ELPDGSVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp CCCTTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CCCCCceeEEEECC--------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 21137899999851 2345889999999999999999754 3445555444444 5553
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.3e-06 Score=86.67 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
..+++.+.+.+.. ....+|||||||+|.++..|+++ +|+|+|+++.++..++.+... .....+...|+..++
T Consensus 16 ~~~~~~i~~~~~~----~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~ 89 (244)
T 1qam_A 16 KHNIDKIMTNIRL----NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFK 89 (244)
T ss_dssp HHHHHHHHTTCCC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCC
T ss_pred HHHHHHHHHhCCC----CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCC
Confidence 3556777776652 34579999999999999999875 899999999988766543321 123345566788888
Q ss_pred CCC-CCeeEEEecccccccccChHHHHHHHHHhccCCeEE
Q 005981 334 YPS-QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYF 372 (666)
Q Consensus 334 f~d-~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~l 372 (666)
+++ ..|+ |+++. -+++. ...+..+.+....++.+
T Consensus 90 ~~~~~~~~-vv~nl-Py~~~---~~~l~~~l~~~~~~~~~ 124 (244)
T 1qam_A 90 FPKNQSYK-IFGNI-PYNIS---TDIIRKIVFDSIADEIY 124 (244)
T ss_dssp CCSSCCCE-EEEEC-CGGGH---HHHHHHHHHSCCCSEEE
T ss_pred cccCCCeE-EEEeC-CcccC---HHHHHHHHhcCCCCeEE
Confidence 764 4564 54443 34442 23444444433333333
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.2e-06 Score=88.62 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=93.5
Q ss_pred cCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc---cc---cccc-cccCCCCCCCCCccceE
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR---GL---IGVM-HDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er---Gl---ig~~-~~~ce~~~~yp~tyDli 586 (666)
..+...+.|+|+|||.|.++.+|+++--++ .++-.|.+..++.+.++ +. |.+. +|. |..-+..+|++
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~---~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~---~~~~~~~~D~~ 248 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPGC---KITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDF---FKDPLPEADLY 248 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSSC---EEEEEECHHHHHHHHHHSCC--CCSEEEEESCT---TTSCCCCCSEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCCc---eeEeccCHHHHHHHHHhhhhcccCceeeecCcc---ccCCCCCceEE
Confidence 345677889999999999999999882122 22333444556555443 11 4333 444 32222568999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh--------------h------------HHHHHHHHHHhcCcE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------D------------VMDELQEIGKAMGWH 640 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~--------------~------------~~~~~~~i~~~l~W~ 640 (666)
.+..++..+.+. ....+|.++.|.|+|||.++|-|.. + ..++.++++++-.|+
T Consensus 249 ~~~~vlh~~~d~-~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~ 327 (353)
T 4a6d_A 249 ILARVLHDWADG-KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFR 327 (353)
T ss_dssp EEESSGGGSCHH-HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCE
T ss_pred EeeeecccCCHH-HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 999999887753 2258999999999999999997531 0 135678889999998
Q ss_pred EEEEeccCCCCCceEEEEEEeC
Q 005981 641 VTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 641 ~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
......-. ....+++|+|.
T Consensus 328 ~v~v~~~~---~~~~~i~ArKg 346 (353)
T 4a6d_A 328 DFQFKKTG---AIYDAILARKG 346 (353)
T ss_dssp EEEEECCS---SSCEEEEEECC
T ss_pred eEEEEEcC---CceEEEEEEec
Confidence 65433222 34678999995
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=85.60 Aligned_cols=100 Identities=19% Similarity=0.115 Sum_probs=66.4
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCC---CceEEEEeeccCC-CCChhHHHhc----cc--cccccc-cCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHD-WCEPFD 577 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~---~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~-~ce~~~ 577 (666)
.+.+.+..+ .+|||+|||.|.+++.|++.+ . +|+.+|. +.+++.+.++ |+ +.+.+. ..+.+.
T Consensus 70 ~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 70 CELLDLKPG--MKVLEIGTGCGYHAAVTAEIVGEDG-----LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred HHhhCCCCC--CEEEEECCCccHHHHHHHHHhCCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344444444 369999999999999998873 4 4555553 5667666654 33 333322 222121
Q ss_pred CCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh
Q 005981 578 TYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 578 ~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~ 625 (666)
-+.+||+|.+...+.+.. .++.|+|||||.+++.-...
T Consensus 143 -~~~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 143 -PLAPYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp -GGCCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred -CCCCeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence 137899999997776543 48899999999999985443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8e-07 Score=94.45 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=83.9
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEecccccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
....|||+|||.|.++.+|+++ +..|.++.+ +.+++.+.+..-+.+. +|..+ .+|. ||+|.+..++.+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~---~~p~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-----PQVVENLSGSNNLTYVGGDMFT---SIPN-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHTTCCCBTTEEEEECCTTT---CCCC-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-----HHHHhhcccCCCcEEEeccccC---CCCC-ccEEEeehhhcc
Confidence 3467999999999999999976 343344333 2333333222113333 44433 3454 999999999988
Q ss_pred CCCCCCHHHHHHHhhhcccC---CeEEEEEeCh-----------h-----------------HHHHHHHHHHhcCcEEEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRP---GGHVYIRDSI-----------D-----------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRP---gG~~ii~d~~-----------~-----------------~~~~~~~i~~~l~W~~~~ 643 (666)
+.+. ....+|.++.|+||| ||+++|.|.. . ..++++++++.-.++...
T Consensus 259 ~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 337 (352)
T 1fp2_A 259 WTDK-DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 337 (352)
T ss_dssp SCHH-HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred CCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeE
Confidence 7653 224899999999999 9999997521 0 124667777777777543
Q ss_pred EeccCCCCCceEEEEEEe
Q 005981 644 RETAEGPHASYRILTADK 661 (666)
Q Consensus 644 ~~~~~~~~~~e~~l~~~k 661 (666)
..... ....|+.++|
T Consensus 338 ~~~~~---~~~~vie~~~ 352 (352)
T 1fp2_A 338 ISPLT---GFLSLIEIYP 352 (352)
T ss_dssp EEEEE---TTEEEEEEEC
T ss_pred EEecC---CCcEEEEEeC
Confidence 32212 2345666654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-06 Score=90.57 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCeEEEECCCCchhHHHhc-------------------cCCeEEEeCCcchHHHHHHHHHHH----------c--CCCce
Q 005981 275 IRVVMDAGCGVASFGAYLL-------------------PRNVITMSIAPKDVHENQIQFALE----------R--GAPAM 323 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~-------------------~~~V~gvDiS~~~l~~a~~~~a~~----------r--g~~~~ 323 (666)
..+|+|+|||+|..+..+. +-+|..-|+..+|.+......... . +....
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999997776651 117788899888875544332211 0 00112
Q ss_pred EEee---cccCCCCCCCCeeEEEecccccccccC--------------------------------------hHHHHHHH
Q 005981 324 VAAF---ATRRLPYPSQAFDLIHCSRCRINWTRD--------------------------------------DGILLLEV 362 (666)
Q Consensus 324 ~~~~---d~e~Lpf~d~sFDlVv~s~~l~h~~~d--------------------------------------~~~~L~el 362 (666)
+..+ ....-.|++++||+|+++.+ +||..+ ...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22333478999999998766 888753 22468888
Q ss_pred HHhccCCeEEEEEEC
Q 005981 363 NRMLRAGGYFAWAAQ 377 (666)
Q Consensus 363 ~RvLkPGG~lv~st~ 377 (666)
++.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999964
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.6e-07 Score=86.95 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=64.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCC-CCCC---CCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEP-FDTY---PRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~-~~~y---p~tyDlih 587 (666)
.+|||+|||.|.++.++++++. .+|+.+|. +.+++.+.++ |+ +.+++...+. .... +.+||+|.
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM----DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEeCCccCHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3699999999999999988753 14566663 4566655443 43 4444333222 1111 47899999
Q ss_pred eccccccCCCCCCHHHHHHHh--hhcccCCeEEEEEeC
Q 005981 588 AAGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDS 623 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~ii~d~ 623 (666)
++..|.. -..+.++.++ .|+|||||++++...
T Consensus 122 ~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp ECCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ECCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 9876542 2346777777 999999999999743
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-06 Score=90.08 Aligned_cols=127 Identities=19% Similarity=0.294 Sum_probs=84.9
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccc-cccCCCCCCCCCcc---ceEE
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTY---DLLH 587 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~ty---Dlih 587 (666)
+|||+|||.|.++.+|++. +. +|+.+|. +.++.++.++ |+ +.++ .|+.+. .+.+| |+|.
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~~-----~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~Iv 197 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSDA-----IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMIL 197 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSSC-----EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEE
T ss_pred EEEEEeCchhHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEE
Confidence 5999999999999999987 55 5666663 5677766554 54 4444 445332 34689 9999
Q ss_pred eccccc-----------cCC-----CCCCHHHHHHHhh-hcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEeccCCC
Q 005981 588 AAGLFS-----------VES-----KRCNMSTIMLEMD-RMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGP 650 (666)
Q Consensus 588 a~~~f~-----------~~~-----~~c~~~~~l~E~d-RiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~~~~ 650 (666)
++--+. +.. ..++-..++.++- +.|+|||++++.-..+..+.+.++++.. ....|.
T Consensus 198 snPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~---- 270 (284)
T 1nv8_A 198 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDS---- 270 (284)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECT----
T ss_pred EcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---Ceeccc----
Confidence 962111 110 0111127899999 9999999999986666677777777665 222232
Q ss_pred CCceEEEEEEeC
Q 005981 651 HASYRILTADKR 662 (666)
Q Consensus 651 ~~~e~~l~~~k~ 662 (666)
.+.++++++.++
T Consensus 271 ~g~~R~~~~~~k 282 (284)
T 1nv8_A 271 AGKYRFLLLNRR 282 (284)
T ss_dssp TSSEEEEEEECC
T ss_pred CCCceEEEEEEc
Confidence 246888888775
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-06 Score=89.26 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=74.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
..|||+|||+|+|+..|++++-. ..|+.+|. +.+++.+.+ .|+ +-+++.-++.+ ..+.+||+|.++...
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~---~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKP---KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC---SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS
T ss_pred CEEEEecCcCCHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc
Confidence 35999999999999999987210 14555553 455555544 344 33555555444 336789999887432
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------hH-HHHHHHHHHhcCcEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------DV-MDELQEIGKAMGWHVT 642 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------~~-~~~~~~i~~~l~W~~~ 642 (666)
....++.++-|+|||||.+++++.. +. .+.++.+.+.+.+++.
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 4568999999999999999998542 23 3445555565666654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.1e-07 Score=88.56 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=79.7
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccC-CCCCCCC-----Cc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWC-EPFDTYP-----RT 582 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~c-e~~~~yp-----~t 582 (666)
++|||+|||.|.++.+|++. +. .|+.+|. +.+++.+.++ |+ |.+..... +.+..++ .+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG-----QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC-----EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 46999999999999999886 33 4555553 4566666543 54 33333221 1112221 68
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------------hHHHHHHHHHH----hcCcEEEEEec
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGK----AMGWHVTLRET 646 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------~~~~~~~~i~~----~l~W~~~~~~~ 646 (666)
||+|.++.. .-....++.++-|+|||||++++.+.. .....++++.+ .-+++......
T Consensus 149 fD~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 222 (232)
T 3cbg_A 149 FDLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL 222 (232)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS
T ss_pred cCEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc
Confidence 999998742 234578999999999999999996321 22334444443 34666666554
Q ss_pred cCCCCCceEEEEEEeC
Q 005981 647 AEGPHASYRILTADKR 662 (666)
Q Consensus 647 ~~~~~~~e~~l~~~k~ 662 (666)
.+ .+.+++|+
T Consensus 223 ~d------G~~~~~~~ 232 (232)
T 3cbg_A 223 GD------GMTLALKK 232 (232)
T ss_dssp BT------CEEEEEEC
T ss_pred CC------eEEEEEeC
Confidence 33 48888874
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-06 Score=88.99 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=63.9
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCC-CCCC------CC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEP-FDTY------PR 581 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~-~~~y------p~ 581 (666)
++|||+|||.|..+..|++. +. .|+.+|. +.+++++.+ .|+ |.+.+...+. .+.+ +.
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~-----~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDG-----KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTC-----EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 47999999999999999875 34 4555653 566666554 355 4444333222 2222 47
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+||+|.++.. .-....++.++.|+|||||.+++.+
T Consensus 156 ~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 156 SYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp CBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CEEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8999998732 2346789999999999999999964
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.8e-06 Score=84.18 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=72.7
Q ss_pred ccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEe
Q 005981 251 FIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAA 326 (666)
Q Consensus 251 F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~ 326 (666)
|...+...+.++.+. ..+ ....+|||||||+|.|+.+.+.+ .|.++|++.. +....... ...+.......
T Consensus 55 YrSRaA~KL~ei~ek-~~l---~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD-l~~~pi~~-~~~g~~ii~~~ 128 (277)
T 3evf_A 55 AVSRGTAKLRWFHER-GYV---KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD-GHEKPMNV-QSLGWNIITFK 128 (277)
T ss_dssp CSSTHHHHHHHHHHT-TSS---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT-TCCCCCCC-CBTTGGGEEEE
T ss_pred ccccHHHHHHHHHHh-CCC---CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc-Cccccccc-CcCCCCeEEEe
Confidence 333444455666655 222 34468999999999999987654 6788888742 21000000 00111222333
Q ss_pred ecccCCCCCCCCeeEEEeccc---ccccccChH--HHHHHHHHhccCC-eEEEEEEC
Q 005981 327 FATRRLPYPSQAFDLIHCSRC---RINWTRDDG--ILLLEVNRMLRAG-GYFAWAAQ 377 (666)
Q Consensus 327 ~d~e~Lpf~d~sFDlVv~s~~---l~h~~~d~~--~~L~el~RvLkPG-G~lv~st~ 377 (666)
.+++...++.+.||+|+|..+ .+++.+... .+|..+.++|+|| |.|++..+
T Consensus 129 ~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 129 DKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred ccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 334555677789999998653 222422222 3568889999999 99999865
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-06 Score=96.69 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=67.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh----ccc---cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e----rGl---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
..|||+|||.|.++..|++.|. ..|+.+|...+++.+.+ .|+ +.+.+...+.+ .+|..||+|.|..++
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~----~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGA----RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDIIISEPMG 234 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTC----SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCH
T ss_pred CEEEEecCcccHHHHHHHHcCC----CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-ccCCCeEEEEEeCch
Confidence 4699999999999999998853 14555654335555544 365 55665544443 256899999998776
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
.+..+. .+...+.++.|+|||||++++
T Consensus 235 ~~~~~e-~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFNE-RMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTCH-HHHHHHHHGGGGEEEEEEEES
T ss_pred HhcCcH-HHHHHHHHHHHhcCCCCEEEE
Confidence 654432 345778899999999999996
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.17 E-value=9.1e-07 Score=86.68 Aligned_cols=97 Identities=9% Similarity=0.101 Sum_probs=67.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCC-CCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEP-FDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~-~~~yp~tyDliha~~~ 591 (666)
.+|||+|||+|.++.+++.++.. .|+.+|. +.+++.+.++ |+ +.+++..++. .+..+.+||+|.++..
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~----~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAA----GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS----EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CeEEEeCCCcCHHHHHHHhcCCC----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 35999999999999998887641 6777774 5777776553 43 4444443333 2223479999999866
Q ss_pred cccCCCCCCHHHHHHHhh--hcccCCeEEEEEeCh
Q 005981 592 FSVESKRCNMSTIMLEMD--RMLRPGGHVYIRDSI 624 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~d--RiLRPgG~~ii~d~~ 624 (666)
|.. -....++.++. |+|||||.+++....
T Consensus 132 ~~~----~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FRR----GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SST----TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCC----CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 542 23467888885 479999999998544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=91.80 Aligned_cols=102 Identities=17% Similarity=0.043 Sum_probs=68.5
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPR 581 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~ 581 (666)
.+.+.+..+. .|||+|||.|.++..|++.+.. ..+|+.+| ++.+++.+.++ |+ +.+.+.-.+....-..
T Consensus 68 ~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 68 MEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGE--KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHhcCCCCcC--EEEEecCCchHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3445555553 6999999999999999987432 01255555 35677666655 55 4444333333222237
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.||+|.+...+.+.. .++.|+|||||.+++...
T Consensus 144 ~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 899999998877654 478899999999999753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.16 E-value=4.7e-06 Score=86.02 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=85.8
Q ss_pred ceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc------cc----cccccccCCC-CCCCCCccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYD 584 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er------Gl----ig~~~~~ce~-~~~yp~tyD 584 (666)
+-++|||+|||.|+++.++++. +. ..|+-+|- +.+++.+.++ ++ +.+.+..+.. +...+.+||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~----~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSV----KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTC----SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCC----ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCee
Confidence 3468999999999999999987 42 24444552 4666666553 22 3444433322 122357999
Q ss_pred eEEeccccccCCC--CCCHHHHHHHhhhcccCCeEEEEEeC-----hhHHHHHHHHHHhcCcEEEEEeccCC--CCCceE
Q 005981 585 LLHAAGLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTLRETAEG--PHASYR 655 (666)
Q Consensus 585 liha~~~f~~~~~--~c~~~~~l~E~dRiLRPgG~~ii~d~-----~~~~~~~~~i~~~l~W~~~~~~~~~~--~~~~e~ 655 (666)
+|.++. +..... .-....++.++.|+|+|||.+++... .+....+.+.+++.--.+......-- +.+...
T Consensus 151 ~Ii~d~-~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~ 229 (275)
T 1iy9_A 151 VIMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWT 229 (275)
T ss_dssp EEEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEE
T ss_pred EEEECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceE
Confidence 999963 332211 01125899999999999999999721 33455555555555444544432111 123567
Q ss_pred EEEEEeCC
Q 005981 656 ILTADKRL 663 (666)
Q Consensus 656 ~l~~~k~~ 663 (666)
+++|.|++
T Consensus 230 ~~~ask~~ 237 (275)
T 1iy9_A 230 FTIGSKKY 237 (275)
T ss_dssp EEEEESSC
T ss_pred EEEeeCCC
Confidence 88898863
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.8e-06 Score=87.47 Aligned_cols=142 Identities=17% Similarity=0.128 Sum_probs=89.0
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCC---CceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT 578 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~---~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~ 578 (666)
....++..+ ..|||+|||.|+++..++..+ . .|+.+|. +.+++.+.++ |+ |.+.+...+.++.
T Consensus 196 ~~~~~~~~~--~~vLD~gcGsG~~~ie~a~~~~~~~-----~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 196 LRLADARPG--MRVLDPFTGSGTIALEAASTLGPTS-----PVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR 268 (354)
T ss_dssp HHHTTCCTT--CCEEESSCTTSHHHHHHHHHHCTTS-----CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred HHHhCCCCC--CEEEeCCCCcCHHHHHHHHhhCCCc-----eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence 344555544 459999999999998888753 4 4555553 4566655543 54 5555555444443
Q ss_pred CCCccceEEeccccccCC-CCC----CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEecc-CCCCC
Q 005981 579 YPRTYDLLHAAGLFSVES-KRC----NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA-EGPHA 652 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~-~~c----~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~-~~~~~ 652 (666)
....||+|.++--|.... ..- ....++.++.|+|||||.+++..... ..++.+.+ ..|+......= +|. -
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g~~~~~~~~l~~g~-l 344 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PGFALRHARVVEQGG-V 344 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TTEEEEEEEECCBTT-B
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cCcEEEEEEEEEeCC-E
Confidence 346799999975543211 111 12578999999999999999975543 22456666 88887554332 333 3
Q ss_pred ceEEEEEEe
Q 005981 653 SYRILTADK 661 (666)
Q Consensus 653 ~e~~l~~~k 661 (666)
.-.|++++|
T Consensus 345 ~~~i~vl~r 353 (354)
T 3tma_A 345 YPRVFVLEK 353 (354)
T ss_dssp CCEEEEEEE
T ss_pred EEEEEEEEc
Confidence 346777766
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=91.12 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=70.8
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP 333 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp 333 (666)
.+.+.+.+.+. ..+.+|||+|||+|.++..++.. +|+|+|+++.++..++. .+...++.. .+...|++++.
T Consensus 201 ~l~~~~~~~~~-----~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~-n~~~ng~~~v~~~~~d~~~~~ 274 (369)
T 3bt7_A 201 QMLEWALDVTK-----GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY-NIAANHIDNVQIIRMAAEEFT 274 (369)
T ss_dssp HHHHHHHHHTT-----TCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHH-HHHHTTCCSEEEECCCSHHHH
T ss_pred HHHHHHHHHhh-----cCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEECCHHHHH
Confidence 34445555443 12368999999999999999875 89999999999988874 445556543 34444443321
Q ss_pred --CCC--------------CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 --YPS--------------QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 --f~d--------------~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+.. .+||+|++..-. ..+..++.+.|+++|.+++.+
T Consensus 275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp HHHSSCCCCTTGGGSCGGGCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEE
T ss_pred HHHhhccccccccccccccCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEE
Confidence 111 379999864221 123456777788888888875
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-06 Score=88.70 Aligned_cols=136 Identities=15% Similarity=0.053 Sum_probs=81.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-----cc-----------cccccccCCC-CCCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-----GL-----------IGVMHDWCEP-FDTYPR 581 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-----Gl-----------ig~~~~~ce~-~~~yp~ 581 (666)
++|||+|||.|+++.+|++.+. .+|+.+|. +.+++.+.++ |+ +.+.+.-... ... +.
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~----~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDV----DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCC----SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CeEEEEcCCcCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 5799999999999999998842 24555553 4666666554 21 2233222111 111 57
Q ss_pred ccceEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEEEEeccCCC--CC
Q 005981 582 TYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEGP--HA 652 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~~~~~~~~~--~~ 652 (666)
+||+|.++.. ......-. ...++.++.|+|||||.+++.. ..+....+.+.++..--.+...... -| .+
T Consensus 152 ~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~-vP~~~g 229 (281)
T 1mjf_A 152 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFP-VIGYAS 229 (281)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEEC-CTTSSS
T ss_pred CeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEe-cCCCCc
Confidence 8999998633 22211111 2688999999999999999962 2334445555454443344433221 11 24
Q ss_pred ceEEEEEEeC
Q 005981 653 SYRILTADKR 662 (666)
Q Consensus 653 ~e~~l~~~k~ 662 (666)
...+++|.|.
T Consensus 230 ~~~~~~as~~ 239 (281)
T 1mjf_A 230 PWAFLVGVKG 239 (281)
T ss_dssp SEEEEEEEES
T ss_pred eEEEEEeeCC
Confidence 5778888886
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-06 Score=89.79 Aligned_cols=130 Identities=14% Similarity=0.197 Sum_probs=83.0
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHh-ccccccc-cccCCCCCCCCCccceEEeccccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYD-RGLIGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~e-rGlig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
....|||+|||.|.++.+|+++ ++.+.+..+ +.+++.+.+ .+ +.+. +|..+ .+| .||+|.+..++.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~-v~~~~~d~~~---~~~-~~D~v~~~~vlh 262 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-----PQVVGNLTGNEN-LNFVGGDMFK---SIP-SADAVLLKWVLH 262 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-----HHHHSSCCCCSS-EEEEECCTTT---CCC-CCSEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-----HHHHhhcccCCC-cEEEeCccCC---CCC-CceEEEEccccc
Confidence 3467999999999999999987 332333332 223322222 12 3333 44433 345 499999999998
Q ss_pred cCCCCCCHHHHHHHhhhcccC---CeEEEEEeCh-----------h------------------HHHHHHHHHHhcCcEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRP---GGHVYIRDSI-----------D------------------VMDELQEIGKAMGWHV 641 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP---gG~~ii~d~~-----------~------------------~~~~~~~i~~~l~W~~ 641 (666)
++.+. ....+|.++.|+||| ||+++|.|.. . ..++++++++.-.++.
T Consensus 263 ~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 341 (358)
T 1zg3_A 263 DWNDE-QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSS 341 (358)
T ss_dssp GSCHH-HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCE
T ss_pred CCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCe
Confidence 87653 224999999999999 9999996421 0 1345677788888876
Q ss_pred EEEeccCCCCCceEEEEEEe
Q 005981 642 TLRETAEGPHASYRILTADK 661 (666)
Q Consensus 642 ~~~~~~~~~~~~e~~l~~~k 661 (666)
.....-. ....|+.++|
T Consensus 342 ~~~~~~~---~~~~vie~~~ 358 (358)
T 1zg3_A 342 YKITPIS---GFKSLIEVYP 358 (358)
T ss_dssp EEEEEET---TTEEEEEEEC
T ss_pred eEEEecC---CCcEEEEEeC
Confidence 5433222 2345666654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-06 Score=88.10 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=75.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC--CCChhHHHhc---------cc-------cccc-cccCCCCCCC-
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDR---------GL-------IGVM-HDWCEPFDTY- 579 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~--~~~l~~~~er---------Gl-------ig~~-~~~ce~~~~y- 579 (666)
..|||+|||+|.++.+|++.|.. .|+.+|. +.+++.+.++ |+ +.+. .+|.+.....
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~~----~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGAD----QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCS----EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CeEEEecccccHHHHHHHHcCCC----EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 36999999999999999998751 3444443 2455555443 21 2232 5576543322
Q ss_pred ----CCccceEEeccccccCCCCCCHHHHHHHhhhccc---C--CeEEEEE-eCh-----hHHHHHHHHHHhcC-cEEEE
Q 005981 580 ----PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLR---P--GGHVYIR-DSI-----DVMDELQEIGKAMG-WHVTL 643 (666)
Q Consensus 580 ----p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLR---P--gG~~ii~-d~~-----~~~~~~~~i~~~l~-W~~~~ 643 (666)
+.+||+|.+.+++-+.. +...++.++.|+|+ | ||.+++. ... +...++.+.++... |++..
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence 37899999987766533 35799999999999 9 9976653 211 12344555667777 77765
Q ss_pred E
Q 005981 644 R 644 (666)
Q Consensus 644 ~ 644 (666)
.
T Consensus 234 ~ 234 (281)
T 3bzb_A 234 W 234 (281)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-06 Score=86.72 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=62.1
Q ss_pred eeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHh----ccc---ccccc-ccCCCCCCC------CC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMH-DWCEPFDTY------PR 581 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~-~~ce~~~~y------p~ 581 (666)
++|||+|||.|..+.+|++. +. .|+.+|. +.+++.+.+ .|+ |.+.+ +..+.++.+ +.
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~-----~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDG-----KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTC-----EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 57999999999999999875 33 4555553 455555543 365 33432 222222222 47
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+||+|.++.- .-....++.++.|+|||||.+++.+
T Consensus 147 ~fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 147 SYDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp CEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 8999998731 2245789999999999999999964
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.08 E-value=6.4e-06 Score=84.36 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=58.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+++.+.+.+.. ....+|||||||+|.++..|+++ +|+++|+++.++..++.+... .....+...|+..+++
T Consensus 16 ~i~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 16 FVLQKIVSAIHP----QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHCC----CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCG
T ss_pred HHHHHHHHhcCC----CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCH
Confidence 456666666642 34578999999999999999987 899999999998777644332 2234556667777776
Q ss_pred C----CCCeeEEEec
Q 005981 335 P----SQAFDLIHCS 345 (666)
Q Consensus 335 ~----d~sFDlVv~s 345 (666)
+ ++.|| |+++
T Consensus 90 ~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGN 103 (255)
T ss_dssp GGSCCSSCEE-EEEE
T ss_pred HHhccCCCeE-EEec
Confidence 4 35688 5544
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.8e-06 Score=88.44 Aligned_cols=115 Identities=11% Similarity=0.056 Sum_probs=75.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----------------------------------------
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----------------------------------------- 295 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----------------------------------------- 295 (666)
.++..++.+.. . .....|||.+||+|+++...+..
T Consensus 188 ~lAa~ll~l~~-~---~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 188 TMAAALVLLTS-W---HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp HHHHHHHHHSC-C---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHhC-C---CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 34445554443 1 23468999999999887655421
Q ss_pred -CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEecccccccc---cChHHHHHHHHHhccC-
Q 005981 296 -NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWT---RDDGILLLEVNRMLRA- 368 (666)
Q Consensus 296 -~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~---~d~~~~L~el~RvLkP- 368 (666)
+|+|+|+++.++..|+. .+...|+. ..+...|+.+++.+ .+||+|+++--...-. .+...+.+++.++||+
T Consensus 264 ~~V~GvDid~~al~~Ar~-Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQ-NAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp CCEEEEESCHHHHHHHHH-HHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 39999999999988875 44555654 35666677777765 5899999874432221 1233566667777776
Q ss_pred -CeEEEEEEC
Q 005981 369 -GGYFAWAAQ 377 (666)
Q Consensus 369 -GG~lv~st~ 377 (666)
||.+++.+.
T Consensus 342 ~g~~~~iit~ 351 (393)
T 3k0b_A 342 PTWSVYVLTS 351 (393)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEC
Confidence 888777753
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-06 Score=93.96 Aligned_cols=126 Identities=10% Similarity=0.106 Sum_probs=80.5
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHh-----------ccc----cc
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYD-----------RGL----IG 567 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~e-----------rGl----ig 567 (666)
+....+.+++..+.. |||+|||+|.++..|+.. |+. .|+.+|. +.++.+|.+ .|+ |.
T Consensus 162 i~~il~~l~l~~gd~--VLDLGCGtG~l~l~lA~~~g~~----kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe 235 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDL--FVDLGSGVGQVVLQVAAATNCK----HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 235 (438)
T ss_dssp HHHHHHHHCCCTTCE--EEEESCTTSHHHHHHHHHCCCS----EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred HHHHHHhcCCCCCCE--EEEeCCCCCHHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 333445556666544 999999999999988754 552 3555653 355655543 243 55
Q ss_pred cccccCCCCCCCC---CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhH------HHHHHHHHHhcC
Q 005981 568 VMHDWCEPFDTYP---RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV------MDELQEIGKAMG 638 (666)
Q Consensus 568 ~~~~~ce~~~~yp---~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~------~~~~~~i~~~l~ 638 (666)
+.+......+ ++ ..||+|.++..+ +. -++...|.||.|+|||||.||+.|...- -+.++.|...|+
T Consensus 236 fi~GD~~~lp-~~d~~~~aDVVf~Nn~~-F~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~ 310 (438)
T 3uwp_A 236 LERGDFLSEE-WRERIANTSVIFVNNFA-FG---PEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMR 310 (438)
T ss_dssp EEECCTTSHH-HHHHHHTCSEEEECCTT-CC---HHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEE
T ss_pred EEECcccCCc-cccccCCccEEEEcccc-cC---chHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhhe
Confidence 5555433222 22 379999987543 21 2456889999999999999999854321 234566777887
Q ss_pred cEE
Q 005981 639 WHV 641 (666)
Q Consensus 639 W~~ 641 (666)
++.
T Consensus 311 v~e 313 (438)
T 3uwp_A 311 VVE 313 (438)
T ss_dssp EEE
T ss_pred eee
Confidence 753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=81.19 Aligned_cols=127 Identities=13% Similarity=-0.034 Sum_probs=75.2
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----------cccccccccCCCCCCCCCccceEE
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----------GLIGVMHDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----------Glig~~~~~ce~~~~yp~tyDlih 587 (666)
-++|||+|||.|++++++++.+. .|+-+|- +.+++.+.++ .-+.+.+.-...+. .+||+|-
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~-----~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii 144 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDT-----HIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIF 144 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSC-----EEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEE
T ss_pred CCEEEEEeCCcCHHHHHHHhCCC-----EEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEE
Confidence 36899999999999999988753 3444442 3444444332 11334433333333 7899999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe-C----hhHHHHHHHHHHhcCcEEEEEeccCCC-CCceEEEEEEe
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-S----IDVMDELQEIGKAMGWHVTLRETAEGP-HASYRILTADK 661 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-~----~~~~~~~~~i~~~l~W~~~~~~~~~~~-~~~e~~l~~~k 661 (666)
++. .+ ....+.++.|+|||||.+++.. . .+....+.+.+++.--.+.... ..-| .+...+++|.|
T Consensus 145 ~d~-----~d---p~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~-~~vP~~g~~~~~~as~ 215 (262)
T 2cmg_A 145 CLQ-----EP---DIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFV-APLRILSNKGYIYASF 215 (262)
T ss_dssp ESS-----CC---CHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEEC-CTTCTTCCEEEEEEES
T ss_pred ECC-----CC---hHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEE-EccCCCcccEEEEeeC
Confidence 871 11 2348999999999999999962 2 1233444444444322333322 2222 23455778887
Q ss_pred C
Q 005981 662 R 662 (666)
Q Consensus 662 ~ 662 (666)
.
T Consensus 216 ~ 216 (262)
T 2cmg_A 216 K 216 (262)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.1e-06 Score=84.00 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+++.+.+.+.. .+. +|||||||+|.++..|+++ +|+++|+++.++..++.+.. +....+...|+..+++
T Consensus 34 ~i~~~Iv~~~~~----~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 34 AHLRRIVEAARP----FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHCC----CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCG
T ss_pred HHHHHHHHhcCC----CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCCh
Confidence 456677776652 334 8999999999999999876 89999999999877654432 2234556667777776
Q ss_pred CC-CCeeEEEeccccccc
Q 005981 335 PS-QAFDLIHCSRCRINW 351 (666)
Q Consensus 335 ~d-~sFDlVv~s~~l~h~ 351 (666)
++ ..+|.|+++.- .+.
T Consensus 106 ~~~~~~~~iv~NlP-y~i 122 (271)
T 3fut_A 106 EEVPQGSLLVANLP-YHI 122 (271)
T ss_dssp GGSCTTEEEEEEEC-SSC
T ss_pred hhccCccEEEecCc-ccc
Confidence 54 26899986533 444
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.3e-06 Score=87.47 Aligned_cols=100 Identities=17% Similarity=0.275 Sum_probs=68.9
Q ss_pred eeEeeccccchH----HHHHHhhC-CC-c-eEEEEeeccC-CCCChhHHHhcc---------------------------
Q 005981 520 RNVLDMRAGFGG----FAAALIEQ-KF-D-CWVMNVVPVS-GFNTLPVIYDRG--------------------------- 564 (666)
Q Consensus 520 RnvlD~g~G~Gg----faa~L~~~-~~-~-vwvmnv~~~~-~~~~l~~~~erG--------------------------- 564 (666)
-.|+|+|||+|- .|..|++. |. . -| .|+.+| ++.+|+.|.+.-
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~--~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRW--KVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE--EEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCe--EEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 359999999997 67667664 21 0 02 677887 468888886531
Q ss_pred ----------ccc-cccccCCC-CCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 565 ----------LIG-VMHDWCEP-FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 565 ----------lig-~~~~~ce~-~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.|- ..||+.+. ++ .+..||+|.|..++.+..+ -....++.++.+.|||||++++...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~-~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCH-HHHHHHHHHHHHHhCCCcEEEEEec
Confidence 011 12566552 22 1378999999988876543 2346999999999999999999543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=87.48 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=77.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc------------------------------------------
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP------------------------------------------ 294 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~------------------------------------------ 294 (666)
.++..|+.+..- ....+|||+|||+|.++..++.
T Consensus 182 ~lAa~ll~~~~~----~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 182 TLAAGLIYLTPW----KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp HHHHHHHHTSCC----CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHhhCC----CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 344455554431 2447899999999988766532
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEecccccccc---cChHHHHHHHHHhccC-
Q 005981 295 RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWT---RDDGILLLEVNRMLRA- 368 (666)
Q Consensus 295 ~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~---~d~~~~L~el~RvLkP- 368 (666)
.+|+|+|+++.++..|+.+ +...++. ..+...|+.+++.+ .+||+|+|+-....-. .+...+.+++.++||+
T Consensus 258 ~~V~GvDid~~ai~~Ar~N-a~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIAREN-AEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp CCEEEEESCHHHHHHHHHH-HHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred ceEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 2599999999999888754 4445653 34556677777654 5899999875533221 2234667777778877
Q ss_pred -CeEEEEEEC
Q 005981 369 -GGYFAWAAQ 377 (666)
Q Consensus 369 -GG~lv~st~ 377 (666)
||.+++.+.
T Consensus 336 ~g~~~~iit~ 345 (385)
T 3ldu_A 336 KNWSYYLITS 345 (385)
T ss_dssp BSCEEEEEES
T ss_pred CCCEEEEEEC
Confidence 887777653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=86.95 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCeEEEECCCCchhHHHhcc---------------------CCeEEEeCCcchHHHHHHHH-------HHHcC--CCceE
Q 005981 275 IRVVMDAGCGVASFGAYLLP---------------------RNVITMSIAPKDVHENQIQF-------ALERG--APAMV 324 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~---------------------~~V~gvDiS~~~l~~a~~~~-------a~~rg--~~~~~ 324 (666)
.-+|+|+||++|..+..+.. -+|+..|+..+|.+...... ....| ....+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 46899999999966654321 15677788766654332221 12223 22344
Q ss_pred Eeec---ccCCCCCCCCeeEEEecccccccccChHH---------------------------------------HHHHH
Q 005981 325 AAFA---TRRLPYPSQAFDLIHCSRCRINWTRDDGI---------------------------------------LLLEV 362 (666)
Q Consensus 325 ~~~d---~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~---------------------------------------~L~el 362 (666)
..+. ...-.|++++||+|+++.+ +||..+... +|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 3344588999999997766 889755321 15555
Q ss_pred HHhccCCeEEEEEECCCCCCH--H-----HHHHHHHHHHH
Q 005981 363 NRMLRAGGYFAWAAQPVYKHE--E-----AQEEHWKEMLD 395 (666)
Q Consensus 363 ~RvLkPGG~lv~st~P~~~~~--~-----el~~~w~~~~~ 395 (666)
++.|+|||.++++.. +.... . .+...|..|..
T Consensus 212 a~eL~pGG~mvl~~~-gr~~~~~~~~~~~~l~~al~~lv~ 250 (384)
T 2efj_A 212 SEELISRGRMLLTFI-CKEDEFDHPNSMDLLEMSINDLVI 250 (384)
T ss_dssp HHHEEEEEEEEEEEE-CCCTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhccCCeEEEEEe-cCCCcccCcccHHHHHHHHHHHHH
Confidence 899999999999964 33333 2 56666665543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-06 Score=84.83 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=80.9
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc------cc----cccccccCCC-CCCCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er------Gl----ig~~~~~ce~-~~~yp~tyDli 586 (666)
.+|||+|||.|+++.+|++. +. .+|+.+|. +.+++.+.++ ++ +.+.+.-... ....+.+||+|
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~----~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSV----EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTC----SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCC----CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 67999999999999999987 32 24555553 4566666553 22 3333332111 22235789999
Q ss_pred Eecccccc-CCCC--CCHHHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEEEEeccC--CCCCceEE
Q 005981 587 HAAGLFSV-ESKR--CNMSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAE--GPHASYRI 656 (666)
Q Consensus 587 ha~~~f~~-~~~~--c~~~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~~~~~~~--~~~~~e~~ 656 (666)
.++ ++.. .... -....++.++.|+|||||.+++.- ..+....+.+.+++.--.+......- -+.+...+
T Consensus 168 i~d-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f 246 (296)
T 1inl_A 168 IID-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSY 246 (296)
T ss_dssp EEE-C----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEE
T ss_pred EEc-CCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEE
Confidence 985 2222 1110 012588999999999999999972 12334444444444434444433211 12345778
Q ss_pred EEEEeCC
Q 005981 657 LTADKRL 663 (666)
Q Consensus 657 l~~~k~~ 663 (666)
++|.|++
T Consensus 247 ~~as~~~ 253 (296)
T 1inl_A 247 TFASKGI 253 (296)
T ss_dssp EEEESSC
T ss_pred EEecCCC
Confidence 8998863
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=82.47 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=75.5
Q ss_pred ccCCCceeeEeeccc------cchH-HHHHHhhCCCceEEEEeeccCCCCChhHHHhcccccc-ccccCCCCCCCCCccc
Q 005981 513 HWKKMKLRNVLDMRA------GFGG-FAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGV-MHDWCEPFDTYPRTYD 584 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~------G~Gg-faa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~-~~~~ce~~~~yp~tyD 584 (666)
.+..+. .|||+|| |.|+ .++.+...+. .|+.+|-...+ + ++ .+ .+..++.++ ++.+||
T Consensus 60 ~l~~g~--~VLDLGcGsg~~~GpGs~~~a~~~~~~~-----~V~gvDis~~v----~-~v-~~~i~gD~~~~~-~~~~fD 125 (290)
T 2xyq_A 60 AVPYNM--RVIHFGAGSDKGVAPGTAVLRQWLPTGT-----LLVDSDLNDFV----S-DA-DSTLIGDCATVH-TANKWD 125 (290)
T ss_dssp CCCTTC--EEEEESCCCTTSBCHHHHHHHHHSCTTC-----EEEEEESSCCB----C-SS-SEEEESCGGGCC-CSSCEE
T ss_pred CCCCCC--EEEEeCCCCCCCCCcHHHHHHHHcCCCC-----EEEEEECCCCC----C-CC-EEEEECccccCC-ccCccc
Confidence 344443 4999999 5576 2222333223 34445532222 2 33 23 333333332 347999
Q ss_pred eEEeccccccC--------CCCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcE-EEEEeccCCCCCce
Q 005981 585 LLHAAGLFSVE--------SKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWH-VTLRETAEGPHASY 654 (666)
Q Consensus 585 liha~~~f~~~--------~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~-~~~~~~~~~~~~~e 654 (666)
+|.|+...... .....++.++.|+.|+|||||+|++.... .....+.++++...|. +... .......|
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~--asr~~s~e 203 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT--NVNASSSE 203 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE--GGGTTSSC
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE--EcCCCchh
Confidence 99996432211 11122458999999999999999996522 2335777788877554 4444 12234578
Q ss_pred EEEEEEe
Q 005981 655 RILTADK 661 (666)
Q Consensus 655 ~~l~~~k 661 (666)
.+|+|+.
T Consensus 204 ~~lv~~~ 210 (290)
T 2xyq_A 204 AFLIGAN 210 (290)
T ss_dssp EEEEEEE
T ss_pred eEEecCC
Confidence 8998875
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-06 Score=85.31 Aligned_cols=128 Identities=12% Similarity=0.098 Sum_probs=90.3
Q ss_pred eeeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhc----ccc-ccccccCCCC-CCCCCccceEEec
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDR----GLI-GVMHDWCEPF-DTYPRTYDLLHAA 589 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~er----Gli-g~~~~~ce~~-~~yp~tyDliha~ 589 (666)
-.+|||+|||+|.+|.+++.. ++ .|+.+| ++.+++++.++ |+- .+-+ ++.. ...|.+||+|-+.
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a-----~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~ 122 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKI-----IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLL 122 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCC-----EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHh
Confidence 447999999999999999776 44 566666 46788888765 332 1222 2211 1235899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh-----------HHHHHHHHHHhcCcEEEEEeccCCCCCceEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-----------VMDELQEIGKAMGWHVTLRETAEGPHASYRILT 658 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-----------~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~ 658 (666)
.++.+..++ +..+..+-+.|||||.||--++.. ..+..++.+..=.|.+...... .|-+-+
T Consensus 123 k~LHlL~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~-----nEl~y~ 194 (200)
T 3fzg_A 123 KMLPVLKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG-----NELVYI 194 (200)
T ss_dssp TCHHHHHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET-----TEEEEE
T ss_pred hHHHhhhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC-----ceEEEE
Confidence 888877544 467779999999999999987321 3567777788888888766653 366666
Q ss_pred EEe
Q 005981 659 ADK 661 (666)
Q Consensus 659 ~~k 661 (666)
.+|
T Consensus 195 ~~~ 197 (200)
T 3fzg_A 195 TSG 197 (200)
T ss_dssp ECC
T ss_pred Eec
Confidence 655
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=84.75 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=81.5
Q ss_pred eeeEeeccccchHHHHHHhh-C-CCceEEEEeeccCC-CCChhHHHhc-cc-----cccccccCCCC-CCCC-CccceEE
Q 005981 519 LRNVLDMRAGFGGFAAALIE-Q-KFDCWVMNVVPVSG-FNTLPVIYDR-GL-----IGVMHDWCEPF-DTYP-RTYDLLH 587 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~-~-~~~vwvmnv~~~~~-~~~l~~~~er-Gl-----ig~~~~~ce~~-~~yp-~tyDlih 587 (666)
-.+|||+|||.|+++.+|++ . ++ .|+-++- +.+++.+.++ ++ +.+++.-...+ ..++ ++||+|.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~-----~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 164 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQS-----RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVII 164 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTC-----EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCc-----EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEE
Confidence 34799999999999999998 3 33 3444442 5677777665 21 33443332222 2344 7999999
Q ss_pred eccccccCCCCCC--HHHHHHHhhhcccCCeEEEEEe--Ch--hHHHH-HHHHHHhcCcEEEEEec-c--CCCCCceEEE
Q 005981 588 AAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRD--SI--DVMDE-LQEIGKAMGWHVTLRET-A--EGPHASYRIL 657 (666)
Q Consensus 588 a~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~d--~~--~~~~~-~~~i~~~l~W~~~~~~~-~--~~~~~~e~~l 657 (666)
++ +|......-. -..++.++.|+|||||.+++.- .. +.... ++.+.+.+. .+.+... . .|......||
T Consensus 165 ~D-~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~Vl 242 (317)
T 3gjy_A 165 RD-VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNIIL 242 (317)
T ss_dssp EC-CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEEE
T ss_pred EC-CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEEE
Confidence 86 4443221111 1589999999999999999952 22 22333 333333343 3443321 1 1222346789
Q ss_pred EEEeCC
Q 005981 658 TADKRL 663 (666)
Q Consensus 658 ~~~k~~ 663 (666)
+|.|.-
T Consensus 243 ~As~~p 248 (317)
T 3gjy_A 243 MGSDTE 248 (317)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 998854
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.6e-05 Score=84.54 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchhHHHhcc------------------------------------------CCeEEEeCCcchHHHHH
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------------------------------------------RNVITMSIAPKDVHENQ 311 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------------------------------------------~~V~gvDiS~~~l~~a~ 311 (666)
....+||.+||+|+++...+. .+|+|+|+++.++..++
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 347899999999988765542 13999999999998887
Q ss_pred HHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccccccc---ChHHHHHHHHHhccC--CeEEEEEEC
Q 005981 312 IQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRA--GGYFAWAAQ 377 (666)
Q Consensus 312 ~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~---d~~~~L~el~RvLkP--GG~lv~st~ 377 (666)
. .+...|+. ..+...|+.+++.+ .+||+|+++--...-.. +...+.+++.+.||+ ||.+++.+.
T Consensus 274 ~-Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 274 K-NAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp H-HHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred H-HHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 4 45556664 34556677777765 58999998744322222 234667777778877 888877764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.7e-06 Score=87.47 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=73.2
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC--C-CceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCC-
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ--K-FDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTY- 579 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~-~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~y- 579 (666)
.+.+..+. .|||+|||.|+++.+|++. + . .|+.+|. +.+++.+.++ |+ +.+.+...+.+...
T Consensus 78 ~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~-----~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 78 VLNPREDD--FILDMCAAPGGKTTHLAQLMKNKG-----TIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL 150 (274)
T ss_dssp HHCCCTTC--EEEETTCTTCHHHHHHHHHTTTCS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred HhCCCCcC--EEEEeCCCccHHHHHHHHHcCCCC-----EEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh
Confidence 34455553 5999999999999999873 3 3 4555663 4566665554 54 33443332222221
Q ss_pred ---CCccceEEeccccccCCC---------------CCCHHHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHh
Q 005981 580 ---PRTYDLLHAAGLFSVESK---------------RCNMSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKA 636 (666)
Q Consensus 580 ---p~tyDliha~~~f~~~~~---------------~c~~~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~ 636 (666)
+..||+|.++--++..+. .-....+|.++.|+|||||.++++. ..+..+.++.++++
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~ 229 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence 468999998733332110 0233689999999999999999962 22344555666644
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-06 Score=86.60 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=59.5
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----c-------ccccccccCCCCCCCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----G-------LIGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----G-------lig~~~~~ce~~~~yp~tyDli 586 (666)
..|||+|||.|.+++.|++. |.. .+|+.+|. +.+++.+.++ | -+.+.+...+....-+..||+|
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCT---GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 36999999999999999876 311 14555553 4566665443 2 1333332222111113789999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
++...+. .++.++.|+|||||.+++...
T Consensus 156 ~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 156 HVGAAAP---------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EECSBBS---------SCCHHHHHTEEEEEEEEEEES
T ss_pred EECCchH---------HHHHHHHHhcCCCcEEEEEEe
Confidence 9986553 345788999999999999743
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1e-05 Score=84.85 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=79.7
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc------cc----cccccccCCC-CCCCCCccceE
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDLL 586 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er------Gl----ig~~~~~ce~-~~~yp~tyDli 586 (666)
-++|||+|||.|+++.+|++.+ ++ .+|+-+|. +.+++++.++ |+ +.+.+.-... +...+.+||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~-~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHP-SV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcC-CC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 3689999999999999999873 11 24555553 4666666553 22 3333332222 12235899999
Q ss_pred EeccccccCCCC--CCHHHHHHHhhhcccCCeEEEEEe-C----hhHHHHHHHHHHhcCcEEEEEeccCCC---CCceEE
Q 005981 587 HAAGLFSVESKR--CNMSTIMLEMDRMLRPGGHVYIRD-S----IDVMDELQEIGKAMGWHVTLRETAEGP---HASYRI 656 (666)
Q Consensus 587 ha~~~f~~~~~~--c~~~~~l~E~dRiLRPgG~~ii~d-~----~~~~~~~~~i~~~l~W~~~~~~~~~~~---~~~e~~ 656 (666)
.++. +...... -....++.++.|+|||||.+++.. . .+....+.+.++++-=.+..... .-| .+...+
T Consensus 173 i~d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~-~vP~~~~g~~g~ 250 (304)
T 2o07_A 173 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYC-TIPTYPSGQIGF 250 (304)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEE-ECTTSGGGEEEE
T ss_pred EECC-CCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEE-EeccccCcceEE
Confidence 9863 2221110 012478999999999999999974 1 23445555544444333433211 112 123567
Q ss_pred EEEEeC
Q 005981 657 LTADKR 662 (666)
Q Consensus 657 l~~~k~ 662 (666)
++|.|.
T Consensus 251 ~~as~~ 256 (304)
T 2o07_A 251 MLCSKN 256 (304)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 888875
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.96 E-value=9.1e-06 Score=85.67 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=78.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc------cc----cccccccCCC-CCCCCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er------Gl----ig~~~~~ce~-~~~yp~tyDlih 587 (666)
++|||+|||.|+++.+|++.. + +..|+.+|. +.+++++.++ |+ +.+.+.-... +..-+.+||+|.
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~-~--~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHE-S--VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCT-T--CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHcC-C--CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 679999999999999999872 1 125666663 5677777654 22 2233222111 111247899999
Q ss_pred eccccccCCC-CCCH-HHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEEEEeccCCCC---CceEEE
Q 005981 588 AAGLFSVESK-RCNM-STIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEGPH---ASYRIL 657 (666)
Q Consensus 588 a~~~f~~~~~-~c~~-~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~~~~~~~~~~---~~e~~l 657 (666)
++. +..... .-.. ..++.++.|+|||||.+++.. ..+....+.+.++.+-=.+..... .-|. +...++
T Consensus 187 ~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~-~iP~~~~g~~g~~ 264 (314)
T 2b2c_A 187 TDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS-IVSTYPSGSMGYL 264 (314)
T ss_dssp ECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE-ECTTSGGGEEEEE
T ss_pred EcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEE-EecCcCCCceEEE
Confidence 863 332211 1112 588999999999999999973 123344444545544334443322 1121 223688
Q ss_pred EEEeC
Q 005981 658 TADKR 662 (666)
Q Consensus 658 ~~~k~ 662 (666)
+|.|.
T Consensus 265 ~ask~ 269 (314)
T 2b2c_A 265 ICAKN 269 (314)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 88775
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-05 Score=76.46 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=81.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
..|||+|||.|.++.+|++.|.. +|+.+|. +.+++.+.++ |+ +.+.+...+. +|.+||+|.++..|.
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK----EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE---FNSRVDIVIMNPPFG 123 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG---CCCCCSEEEECCCCS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH---cCCCCCEEEEcCCCc
Confidence 46999999999999999998642 4666663 5667666654 32 4444444333 467999999987776
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
..... ....++.++.|+| ||.+++. ...+..+.+.+++....|++...
T Consensus 124 ~~~~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 124 SQRKH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SSSTT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccCC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 65433 2357888999999 6655544 36677888888888888887543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=85.38 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=83.1
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc------cc----cccccccCCC-CCCCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er------Gl----ig~~~~~ce~-~~~yp~tyDli 586 (666)
++|||+|||.|+++.+|++. +. .+|+.+|. +.+++++.++ |+ +.+.+..... ....+.+||+|
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~----~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSV----ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTC----CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCC----CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 57999999999999999987 21 25556663 5677777654 12 2233222111 11125789999
Q ss_pred EeccccccCCCCCCH--HHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEEEEecc--CCCCCceEEE
Q 005981 587 HAAGLFSVESKRCNM--STIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETA--EGPHASYRIL 657 (666)
Q Consensus 587 ha~~~f~~~~~~c~~--~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~~~~~~--~~~~~~e~~l 657 (666)
.++. +......-.+ ..++.++.|+|||||.+++.. ..+....+.+.++..--.+...... .-+.+...++
T Consensus 194 i~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~ 272 (321)
T 2pt6_A 194 IVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 272 (321)
T ss_dssp EEEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEE
T ss_pred EECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEE
Confidence 9863 2222111111 689999999999999999963 2234455555555554455444321 1112345678
Q ss_pred EEEeCC
Q 005981 658 TADKRL 663 (666)
Q Consensus 658 ~~~k~~ 663 (666)
+|.|.+
T Consensus 273 ~as~~~ 278 (321)
T 2pt6_A 273 CCSKTD 278 (321)
T ss_dssp EEESST
T ss_pred EeeCCC
Confidence 888764
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-05 Score=80.83 Aligned_cols=102 Identities=9% Similarity=-0.034 Sum_probs=67.3
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCC---CCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS---QAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d---~sFDlVv~ 344 (666)
++.+|||+|||+|..+..++. ..|+++|+++.++..++.+ ++..|+.. .+...|...++... ++||.|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATL-LARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 457999999999988887765 2799999999988877644 44456543 44455665554322 57999996
Q ss_pred c----cc-cc------cc----c-cCh-------HHHHHHHHHhccCCeEEEEEEC
Q 005981 345 S----RC-RI------NW----T-RDD-------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s----~~-l~------h~----~-~d~-------~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .. .+ .| . .+. ..+|..+.++|+ ||.++++|-
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 2 11 11 01 1 111 145777777787 999999874
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.1e-06 Score=82.31 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=63.4
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCC-CceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~yp 580 (666)
.+.+.+..+ .+|||+|||.|.+++.|++.+ . +|+.+| ++.+++.+.++ |+ +.+...-. ...++
T Consensus 84 ~~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~ 154 (235)
T 1jg1_A 84 LEIANLKPG--MNILEVGTGSGWNAALISEIVKT-----DVYTIERIPELVEFAKRNLERAGVKNVHVILGDG--SKGFP 154 (235)
T ss_dssp HHHHTCCTT--CCEEEECCTTSHHHHHHHHHHCS-----CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGCCG
T ss_pred HHhcCCCCC--CEEEEEeCCcCHHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc--ccCCC
Confidence 344444444 369999999999999999874 4 455555 34566666554 43 33332221 22334
Q ss_pred --CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 581 --RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 581 --~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
..||+|.+...+.+.. .++.|+|||||.+++.-.
T Consensus 155 ~~~~fD~Ii~~~~~~~~~---------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 155 PKAPYDVIIVTAGAPKIP---------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp GGCCEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEEEC
T ss_pred CCCCccEEEECCcHHHHH---------HHHHHhcCCCcEEEEEEe
Confidence 3499999986665432 378899999999999744
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.7e-06 Score=89.90 Aligned_cols=119 Identities=17% Similarity=0.295 Sum_probs=74.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----ccc-ccccccCCC-CCCCCCccceEEeccc-c
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLI-GVMHDWCEP-FDTYPRTYDLLHAAGL-F 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gli-g~~~~~ce~-~~~yp~tyDliha~~~-f 592 (666)
.|||+|||+|+|+.+++..|. .|+.+|. +.+++.+.++ |+- .+.+..+.. ...++..||+|.++-- |
T Consensus 217 ~VLDlg~GtG~~sl~~a~~ga-----~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 217 RVLDVYSYVGGFALRAARKGA-----YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp EEEEESCTTTHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred eEEEcccchhHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 599999999999999999987 3566663 5666665543 442 122222211 2223545999998632 2
Q ss_pred ccCCC-----CCCHHHHHHHhhhcccCCeEEEEEeC------hhHHHHHHHHHHhcCcEEEEE
Q 005981 593 SVESK-----RCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 593 ~~~~~-----~c~~~~~l~E~dRiLRPgG~~ii~d~------~~~~~~~~~i~~~l~W~~~~~ 644 (666)
..... ......++.++-|+|||||++++... .+..+.+++.+...+.++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH 354 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 21111 01235788899999999999996522 234566777776666555443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.92 E-value=2e-05 Score=76.28 Aligned_cols=111 Identities=16% Similarity=0.028 Sum_probs=72.8
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc-ccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG-LIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG-lig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
..|||+|||.|.++.+|++.|.. .|+.+|. +.+++.+.++- -+.+.+...+. +|.+||+|.++..|.+..+
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~---~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAE----SVTAFDIDPDAIETAKRNCGGVNFMVADVSE---ISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS----EEEEEESCHHHHHHHHHHCTTSEEEECCGGG---CCCCEEEEEECCCC-----
T ss_pred CEEEEEeCCccHHHHHHHHcCCC----EEEEEECCHHHHHHHHHhcCCCEEEECcHHH---CCCCeeEEEECCCchhccC
Confidence 46999999999999999988641 4666663 57788877763 13344433333 4589999999988877654
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~ 642 (666)
.. ...++.++-|+| |+.+++. +......+.+++.... ++.
T Consensus 126 ~~-~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 126 HS-DRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG-DVF 165 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE-EEE
T ss_pred ch-hHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC-CEE
Confidence 32 247888999998 5544444 4455677777777766 543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=84.78 Aligned_cols=115 Identities=11% Similarity=0.053 Sum_probs=79.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCC-CCC-CCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEP-FDT-YPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~-~~~-yp~tyDliha~~ 590 (666)
..|||+| |.|.++.+|+..+.. ..|+.+|. +.+++.+.++ |+ +.+++...+. ++. .+.+||+|.++.
T Consensus 174 ~~VLDlG-G~G~~~~~la~~~~~---~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 174 KDIFVLG-DDDLTSIALMLSGLP---KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp CEEEEES-CTTCHHHHHHHHTCC---SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CEEEEEC-CCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 5699999 999999999887421 15666774 6788777665 65 5555443333 443 346999999986
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCe-EEEEEeC-----hhHHHHHHHHHH-hcCcEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGG-HVYIRDS-----IDVMDELQEIGK-AMGWHVT 642 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG-~~ii~d~-----~~~~~~~~~i~~-~l~W~~~ 642 (666)
.|.... ...++.++.|+||||| .+++.-. .+....+++++. .+.+++.
T Consensus 250 p~~~~~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 304 (373)
T 2qm3_A 250 PETLEA----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVIT 304 (373)
T ss_dssp CSSHHH----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEE
T ss_pred CCchHH----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchh
Confidence 665432 4789999999999999 4355422 223367778777 7777653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=9.8e-06 Score=85.22 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=81.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc------c-c----cccccccCCCC-CCCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR------G-L----IGVMHDWCEPF-DTYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er------G-l----ig~~~~~ce~~-~~yp~tyDli 586 (666)
++|||+|||.|+++.+|++.. + +.+|+.+|. +.+++.+.++ | + +.+.+.-...+ ...+.+||+|
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~-~--~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHP-T--VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTST-T--CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcC-C--CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 679999999999999999872 1 124555553 4566666543 2 1 33333222221 1125799999
Q ss_pred EeccccccC---CCCCC--HHHHHHHhhhcccCCeEEEEEe------ChhHHHHHHHHHHhcCcEEEEEeccCCC--CCc
Q 005981 587 HAAGLFSVE---SKRCN--MSTIMLEMDRMLRPGGHVYIRD------SIDVMDELQEIGKAMGWHVTLRETAEGP--HAS 653 (666)
Q Consensus 587 ha~~~f~~~---~~~c~--~~~~l~E~dRiLRPgG~~ii~d------~~~~~~~~~~i~~~l~W~~~~~~~~~~~--~~~ 653 (666)
.++.. .+. ...-. ...++.++.|+|||||.+++.- ..+....+.+.++..--.+...... -| .+.
T Consensus 156 i~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~-vP~~~g~ 233 (314)
T 1uir_A 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNH-IPGFFLN 233 (314)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEE-EGGGTEE
T ss_pred EECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEe-cCCCCCe
Confidence 99743 322 11000 2689999999999999999962 1234555555565554444332210 01 124
Q ss_pred eEEEEEEeC
Q 005981 654 YRILTADKR 662 (666)
Q Consensus 654 e~~l~~~k~ 662 (666)
..+++|.|.
T Consensus 234 ~~~~~as~~ 242 (314)
T 1uir_A 234 FGFLLASDA 242 (314)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEECC
Confidence 567888886
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=87.54 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=68.7
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc--------------CCC-ceEEeecccCCC-C
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER--------------GAP-AMVAAFATRRLP-Y 334 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r--------------g~~-~~~~~~d~e~Lp-f 334 (666)
+.+|||+|||+|.++..++.+ +|+++|+++..+..++.+..... ++. ..+...|+..+. .
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 368999999999988877653 79999999998888776554431 544 334444433321 1
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..+.||+|++.- . .....++..+.+.||+||.++++.
T Consensus 128 ~~~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999432 1 234688999999999999988874
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.90 E-value=5.5e-06 Score=91.06 Aligned_cols=109 Identities=8% Similarity=0.118 Sum_probs=67.6
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHH-------Hh----ccc----cc
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVI-------YD----RGL----IG 567 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~-------~e----rGl----ig 567 (666)
+....+.+++..+. .|||+|||+|.+++.|++. |+. .|+.+|. +.++..| .+ .|+ +.
T Consensus 231 v~~ml~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~----~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~ 304 (433)
T 1u2z_A 231 LSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCA----LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 304 (433)
T ss_dssp HHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCS----EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceE
Confidence 34455556655553 5999999999999999986 531 3444442 3344444 43 352 33
Q ss_pred ccc--ccCCC--CCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 568 VMH--DWCEP--FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 568 ~~~--~~ce~--~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+.+ +..+. |.....+||+|.++..+ +. -++..+|.|+.|+|||||.+++.|.
T Consensus 305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~---~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 305 FSLKKSFVDNNRVAELIPQCDVILVNNFL-FD---EDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTT-CC---HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEEcCccccccccccccCCCCEEEEeCcc-cc---ccHHHHHHHHHHhCCCCeEEEEeec
Confidence 333 12110 11113689999986443 11 2456889999999999999999853
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.5e-06 Score=84.23 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=60.1
Q ss_pred eeEeeccccchHHHHHHhhCCC----ceEEEEeeccCC-CCChhHHHhc----cc-------cccccccCCCCC----CC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKF----DCWVMNVVPVSG-FNTLPVIYDR----GL-------IGVMHDWCEPFD----TY 579 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~----~vwvmnv~~~~~-~~~l~~~~er----Gl-------ig~~~~~ce~~~----~y 579 (666)
.+|||+|||.|.+++.|++... +- .+|+.+|. +.+++.+.++ |+ +.+.+...+... .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKN--SYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTT--CEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCC--CEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 3699999999999999988631 00 13555553 4566666554 31 333332222211 11
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
...||+|++...+.+ ++.++.++|||||.+++.-.
T Consensus 160 ~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence 278999999866543 45788999999999999743
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=84.49 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=64.4
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc------cc----cccccccCCC-CCCCC-Cccce
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR------GL----IGVMHDWCEP-FDTYP-RTYDL 585 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er------Gl----ig~~~~~ce~-~~~yp-~tyDl 585 (666)
-++|||+|||.|+++.+|++.. ++ .+|+.+|. +.+++++.++ |+ +.+.+.-... +..++ .+||+
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~-~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHA-SI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCT-TC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCEEEEECCCccHHHHHHHHcC-CC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4689999999999999999872 11 25566663 5677776653 33 3333332222 22233 79999
Q ss_pred EEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE
Q 005981 586 LHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 586 iha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|.++.. ......-. ...++.++.|+|||||.+++.
T Consensus 198 Ii~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998632 21111001 258999999999999999996
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.4e-06 Score=86.14 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=54.9
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCC--CCCCC----Ccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEP--FDTYP----RTY 583 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~--~~~yp----~ty 583 (666)
..|||+|||+|.++.+|+.+ +. .|+.+|. +.+++.+.++ |+ +.+++..++. +..++ .+|
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLNGW-----YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY 141 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred CEEEEeCCChhHHHHHHHHhCCCC-----eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcc
Confidence 46999999999999999876 44 5666663 5677666554 44 4555544332 22333 589
Q ss_pred ceEEeccccccCCC-------C-----CCHHHHHHHhhhcccCCeEEEE
Q 005981 584 DLLHAAGLFSVESK-------R-----CNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 584 Dliha~~~f~~~~~-------~-----c~~~~~l~E~dRiLRPgG~~ii 620 (666)
|+|.|+--|..... + .....++.++.|+|||||.+.+
T Consensus 142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 99999854432220 0 0112345566666666665544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.4e-05 Score=85.70 Aligned_cols=120 Identities=12% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchhHHHhcc-----------------C---CeEEEeCCcchHHHHHHHHHHH-cCCCceEEee---ccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP-----------------R---NVITMSIAPKDVHENQIQFALE-RGAPAMVAAF---ATR 330 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-----------------~---~V~gvDiS~~~l~~a~~~~a~~-rg~~~~~~~~---d~e 330 (666)
.-+|+|+||++|..+..+.. . +|+..|+..+|.+......... ......+..+ ...
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 45799999999965543321 1 6888899999886654332210 0002233322 233
Q ss_pred CCCCCCCCeeEEEecccccccccChH---------------------------------HHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDG---------------------------------ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~---------------------------------~~L~el~RvLkPGG~lv~st~ 377 (666)
.-.|+++++|+|+++.+ +||..+.. .+|+..++.|+|||.++++..
T Consensus 132 ~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 45689999999997766 88975422 238888999999999999853
Q ss_pred CCCC----------CHHHHHHHHHHHHH
Q 005981 378 PVYK----------HEEAQEEHWKEMLD 395 (666)
Q Consensus 378 P~~~----------~~~el~~~w~~~~~ 395 (666)
.... -...+...|..|..
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~ 238 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVS 238 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHH
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHH
Confidence 1111 12356667766543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=89.22 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=76.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc----------------------CCeEEEeCCcchHHHHHHHH
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----------------------RNVITMSIAPKDVHENQIQF 314 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~----------------------~~V~gvDiS~~~l~~a~~~~ 314 (666)
.+++.|.+++.. ....+|||.|||+|.+...+.+ .+++|+|+++.++..|+.+.
T Consensus 156 ~iv~~mv~~l~p----~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl 231 (541)
T 2ar0_A 156 PLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 231 (541)
T ss_dssp HHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc----CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHH
Confidence 445555555542 3446899999999987755532 26999999999887776544
Q ss_pred HHHcCCC------ceEEeecccCCC-CCCCCeeEEEeccccccccc------------C-hHHHHHHHHHhccCCeEEEE
Q 005981 315 ALERGAP------AMVAAFATRRLP-YPSQAFDLIHCSRCRINWTR------------D-DGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 315 a~~rg~~------~~~~~~d~e~Lp-f~d~sFDlVv~s~~l~h~~~------------d-~~~~L~el~RvLkPGG~lv~ 374 (666)
.. +++. ..+...|+...+ .....||+|+++-.+..... + ...++..+.+.|+|||.+++
T Consensus 232 ~l-~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 232 LL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp HT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred HH-hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 33 3443 234444433222 34578999998754332211 1 12688999999999999999
Q ss_pred EEC
Q 005981 375 AAQ 377 (666)
Q Consensus 375 st~ 377 (666)
..+
T Consensus 311 V~p 313 (541)
T 2ar0_A 311 VVP 313 (541)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=87.28 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=74.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccCCCC-CCC---CCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWCEPF-DTY---PRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~ce~~-~~y---p~tyDli 586 (666)
..|||+|||+|+|+.++++.|+. .|+.+|. +.+++.+.++ |+ +.+++..++.+ +.. ..+||+|
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~----~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAM----ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBS----EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCCC----EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 36999999999999999997641 4566663 5677666543 43 22333332221 111 2489999
Q ss_pred Eecccccc-----CCC-CCCHHHHHHHhhhcccCCeEEEEEeC------hhHHHHHHHHHHhcCcE
Q 005981 587 HAAGLFSV-----ESK-RCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWH 640 (666)
Q Consensus 587 ha~~~f~~-----~~~-~c~~~~~l~E~dRiLRPgG~~ii~d~------~~~~~~~~~i~~~l~W~ 640 (666)
.++--... ..+ ...+..++.++.|+|+|||.+++... ....+.+++.++..+++
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 98633311 110 01234577888999999999999743 23466677778888887
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.9e-05 Score=83.78 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=78.3
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC--C-CceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-C
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ--K-FDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-Y 579 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~-~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-y 579 (666)
.+++..+. .|||+|||.|+++.+|++. + . .|+.+|. +..+..+.++ |+ +.+.+...+.++. +
T Consensus 254 ~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~-----~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~ 326 (450)
T 2yxl_A 254 VLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKG-----KIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII 326 (450)
T ss_dssp HHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCS-----EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSS
T ss_pred hcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCC-----EEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhh
Confidence 34555553 5999999999999999874 2 3 4666663 4666666555 65 4444433333332 5
Q ss_pred C-CccceEEec------cccccCCC------CCCH-------HHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHH
Q 005981 580 P-RTYDLLHAA------GLFSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGK 635 (666)
Q Consensus 580 p-~tyDliha~------~~f~~~~~------~c~~-------~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~ 635 (666)
+ .+||+|.++ +++....+ .-++ ..+|.++.|+|||||.+++.+ ..+..+.++.+++
T Consensus 327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~ 406 (450)
T 2yxl_A 327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLN 406 (450)
T ss_dssp CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 5 789999963 22221111 0112 478999999999999999863 3344556677776
Q ss_pred hc-CcEE
Q 005981 636 AM-GWHV 641 (666)
Q Consensus 636 ~l-~W~~ 641 (666)
+. .|+.
T Consensus 407 ~~~~~~~ 413 (450)
T 2yxl_A 407 VHPEFKL 413 (450)
T ss_dssp HCSSCEE
T ss_pred hCCCCEE
Confidence 65 4554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2e-05 Score=81.63 Aligned_cols=140 Identities=17% Similarity=0.166 Sum_probs=79.9
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc------c----cccccccCCCC-CCCCCccceE
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG------L----IGVMHDWCEPF-DTYPRTYDLL 586 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG------l----ig~~~~~ce~~-~~yp~tyDli 586 (666)
-++|||+|||.|+++.++++.+ + +.+|+-+|. +.+++.+.++- + +.+.+.-...+ ...+.+||+|
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~-~--~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYK-S--VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-T--CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcC-C--CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 3689999999999999999873 1 125555553 46666666541 1 22332222111 1125799999
Q ss_pred EeccccccCCCCCCH--HHHHHHhhhcccCCeEEEEEeC-----hhHHHHHHHHHHhcCcEEEEEeccCCC--CCceEEE
Q 005981 587 HAAGLFSVESKRCNM--STIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTLRETAEGP--HASYRIL 657 (666)
Q Consensus 587 ha~~~f~~~~~~c~~--~~~l~E~dRiLRPgG~~ii~d~-----~~~~~~~~~i~~~l~W~~~~~~~~~~~--~~~e~~l 657 (666)
.++. +......-.+ ..++.++.|+|||||.+++... .+....+.+.+++.--.+......--. .+...++
T Consensus 156 i~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~ 234 (283)
T 2i7c_A 156 IVDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 234 (283)
T ss_dssp EEEC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEE
T ss_pred EEcC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEE
Confidence 9863 2222211111 5899999999999999999732 233344444444443334332221111 1223577
Q ss_pred EEEeC
Q 005981 658 TADKR 662 (666)
Q Consensus 658 ~~~k~ 662 (666)
+|.|.
T Consensus 235 ~~s~~ 239 (283)
T 2i7c_A 235 CCSKT 239 (283)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 77765
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=76.61 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=75.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-C----CCceEEeec-ccCCCCCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-G----APAMVAAFA-TRRLPYPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-g----~~~~~~~~d-~e~Lpf~d~sFDlV 342 (666)
..+++||-||.|.|..++.+++. +|+.+|+++..+..++.-+.... + ....+...| .+-+.-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 46789999999999999988875 79999999987766654333211 1 122333344 33344456889999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
+.- +....... ...+++.+.++|+|||.++......+.....+....
T Consensus 162 i~D-~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~ 212 (294)
T 3o4f_A 162 ISD-CTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSH 212 (294)
T ss_dssp EES-CCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHH
T ss_pred EEe-CCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHH
Confidence 953 32322111 137899999999999999986432233334444333
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=97.78 E-value=4.2e-05 Score=83.71 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=75.6
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCC-CC-Cc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDT-YP-RT 582 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~-yp-~t 582 (666)
.+....+. .|||+|||.|+++..|++..-+ ..|+.+|. +..+..+.++ |+ +.+.+.....+.. ++ ..
T Consensus 241 ~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~ 315 (429)
T 1sqg_A 241 WLAPQNGE--HILDLCAAPGGKTTHILEVAPE---AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 315 (429)
T ss_dssp HHCCCTTC--EEEEESCTTCHHHHHHHHHCTT---CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred HcCCCCcC--eEEEECCCchHHHHHHHHHcCC---CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCC
Confidence 34455553 5999999999999999987311 25666663 5777776665 55 3334333222221 33 68
Q ss_pred cceEEecc------ccccCCC------CCCH-------HHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHhc
Q 005981 583 YDLLHAAG------LFSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAM 637 (666)
Q Consensus 583 yDliha~~------~f~~~~~------~c~~-------~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~l 637 (666)
||+|.++- ++.+..+ ..++ ..+|.++-++|||||+++++. ..+..+.++.++++.
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~ 393 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT 393 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhC
Confidence 99999642 2221111 0111 378999999999999999974 334455666666553
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=86.84 Aligned_cols=113 Identities=14% Similarity=0.196 Sum_probs=72.1
Q ss_pred eEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-CCCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-yp~tyDliha~ 589 (666)
.|||||||.|+.+.+|++. +. .|+.+|. +.++..+.++ |+ +.+.+...+.+.. .+.+||+|.++
T Consensus 120 ~VLDl~aGpG~kt~~lA~~~~~~g-----~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D 194 (479)
T 2frx_A 120 RVMDVAAAPGSKTTQISARMNNEG-----AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLD 194 (479)
T ss_dssp EEEESSCTTSHHHHHHHHHTTTCS-----EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEEC
Confidence 5999999999999999875 12 3666663 5666666554 55 4445444444433 45799999974
Q ss_pred ------cccccCCCCC---C----------HHHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHhcC
Q 005981 590 ------GLFSVESKRC---N----------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAMG 638 (666)
Q Consensus 590 ------~~f~~~~~~c---~----------~~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~l~ 638 (666)
++|....+.. . -..+|.++-|+|||||.++++. ..+.-+.++.++++..
T Consensus 195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 3333211110 0 1378999999999999999962 2333445566666554
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.9e-05 Score=84.36 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCc---eEEeecccCC-C-CCCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRL-P-YPSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~d~e~L-p-f~d~sFDlVv~ 344 (666)
+.+|||++||+|.++..++. ..|+++|+++..+..++. .++..++.. .+...|+..+ . ...+.||+|++
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~-N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE-NFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 46899999999999988776 279999999988877764 455556643 3444443221 1 11467999996
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.- + .....++..+.+.|++||+++++.
T Consensus 132 DP----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 54 2 234578999999999999988875
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=6e-05 Score=86.36 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcc----cccCCCCCCeEEEECCCCchhHH---HhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-
Q 005981 256 DQYLDQIAKMVP----DITWGHHIRVVMDAGCGVASFGA---YLLPR-----NVITMSIAPKDVHENQIQFALERGAPA- 322 (666)
Q Consensus 256 ~~~i~~L~~~L~----~i~~g~~~~~VLDIGCGtG~~a~---~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~- 322 (666)
+.|-+.|.+.+. +.........|||||||+|.+.. ...++ +|++|+-++... .++ +..++++...
T Consensus 335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~-~~v~~N~~~dk 412 (637)
T 4gqb_A 335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTL-ENWQFEEWGSQ 412 (637)
T ss_dssp HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHH-HHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHH-HHHHhccCCCe
Confidence 345555554433 22222334579999999997632 22222 689999998433 333 3344445443
Q ss_pred -eEEeecccCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEE
Q 005981 323 -MVAAFATRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 323 -~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv 373 (666)
.+...+++++..+ +.+|+|++-.+-.... +.....|....|.|||||.++
T Consensus 413 VtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 413 VTVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 4555578888776 6899999643222111 223367778899999999863
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=8.8e-06 Score=87.74 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=76.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-C---CCccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-Y---PRTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-y---p~tyDliha 588 (666)
..|||+|||+|+|+.+|++.+ .+|+.+|. +.+++.+.++ |+ +.+++.-++.+.. . +.+||+|.+
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~-----~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGF-----REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHE-----EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeeccCHHHHHHHHhC-----CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 569999999999999999873 25666663 4566655543 54 4444443333221 1 468999998
Q ss_pred ccccccCCCC------CCHHHHHHHhhhcccCCeEEEEEeCh------hHHHHHHHHHHhcCcEEEEE
Q 005981 589 AGLFSVESKR------CNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 589 ~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~ii~d~~------~~~~~~~~i~~~l~W~~~~~ 644 (666)
+--....... -....++.++-|+|+|||++++.... ...+.+++.+...+.+..+.
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6322111111 12357899999999999999997432 23555666666676555443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=87.19 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=74.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccCCCCCC-C---CCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWCEPFDT-Y---PRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~ce~~~~-y---p~tyDli 586 (666)
..|||+|||+|+|+.+|++.|+ -.|+.+|. +.+++.+.++ |+ +.+++..++.+.. + ...||+|
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~----~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 3699999999999999999863 14555653 4555555443 43 2233333222211 1 3689999
Q ss_pred Eecccccc------CCCCCCHHHHHHHhhhcccCCeEEEEEeCh------hHHHHHHHHHHhcCcEEE
Q 005981 587 HAAGLFSV------ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 587 ha~~~f~~------~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------~~~~~~~~i~~~l~W~~~ 642 (666)
.++--+.. ......+..++.++-++|+|||+++++... +..+.+++.+...+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 365 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 98732211 011134578999999999999999997432 335556666666664443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.2e-05 Score=76.92 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=88.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc---cccc-cccCCCCCCCCC-ccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVM-HDWCEPFDTYPR-TYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~-~~~ce~~~~yp~-tyDliha~ 589 (666)
..|+|+|||+|.++.+|++.+- .-.|+.+|- +..++.|.+ .|+ |.+. .|+.+.++. . .||+|-..
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~---~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--~~~~D~Ivia 91 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQ---IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--TDQVSVITIA 91 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS---EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--CcCCCEEEEc
Confidence 3599999999999999999852 124556663 455555544 465 3344 344343331 3 69988865
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEe--ccCCCCCceEEEEEEe
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE--TAEGPHASYRILTADK 661 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~--~~~~~~~~e~~l~~~k 661 (666)
++ + ...+..+|.+..+.|+|+|++|++-. .-...+++.+...+|.+.... .|++ .-..||++.+
T Consensus 92 G~----G-g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~e~lv~e~~--~~Yeii~~~~ 157 (225)
T 3kr9_A 92 GM----G-GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVAESILEEAG--KFYEILVVEA 157 (225)
T ss_dssp EE----C-HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEEEEEEEETT--EEEEEEEEEE
T ss_pred CC----C-hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECC--EEEEEEEEEe
Confidence 32 1 23467899999999999999999766 568889999999999987654 2332 2355777665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 666 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 5e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.002 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 4e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 46.4 bits (109), Expect = 5e-06
Identities = 19/123 (15%), Positives = 41/123 (33%)
Query: 500 YWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV 559
Y+N+ S++ WK K +++D G+G L+ + +
Sbjct: 9 YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68
Query: 560 IYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY 619
L+ ++ E T D A + T++ +M ++ GG +
Sbjct: 69 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
Query: 620 IRD 622
+
Sbjct: 129 CFE 131
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.9 bits (87), Expect = 0.002
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 10/169 (5%)
Query: 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVH 308
T+ ++ D Y+ + V IT HI +D GCG G L+P D
Sbjct: 5 TRDLYYNDDYVSFLVNTVWKITKPVHI---VDYGCGYGYLGLVLMPLLPEGSKYTGIDSG 61
Query: 309 ENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR--INWTRDDGILLLEVNRML 366
E + A E + + D + C + +L ++ +
Sbjct: 62 ETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSV 121
Query: 367 RAGGYFA-----WAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410
+ GG W + + +++ L + +L ++ G
Sbjct: 122 KKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK 170
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 6/136 (4%)
Query: 485 DAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCW 544
+ R E KAE + EI + K ++R VLD+ G G L E+ ++
Sbjct: 14 TIYRRRIERVKAEIDFVEEIFKED------AKREVRRVLDLACGTGIPTLELAERGYEVV 67
Query: 545 VMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTI 604
+++ +R L + +D + + ++ +
Sbjct: 68 GLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKL 127
Query: 605 MLEMDRMLRPGGHVYI 620
++ L+PGG
Sbjct: 128 FSKVAEALKPGGVFIT 143
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
+D CG + L P+ T ++ ++ + A ++
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100
Query: 338 AFDLIHCSRCRINWTRDDGIL---LLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 394
FDLI C N+ D L V+ L+ GG F + YK + +
Sbjct: 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYD 160
Query: 395 DLTTRLCWELVKKEGYIAIW 414
D WE ++ ++++
Sbjct: 161 DDEVFYYWENQFEDDLVSMY 180
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.5 bits (88), Expect = 0.002
Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 2/130 (1%)
Query: 492 ELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551
+L +A+ Y + + + + + LD+ G G L + + W +++
Sbjct: 12 KLIRADVDY-KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE 70
Query: 552 SGFNTLPVIYDRGLIGVMHDW-CEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDR 610
+GL + + + + + ++ +
Sbjct: 71 MLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSN 130
Query: 611 MLRPGGHVYI 620
L+ GG
Sbjct: 131 HLKEGGVFIF 140
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 666 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.69 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.69 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.65 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.6 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.58 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.55 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.53 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.53 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.52 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.5 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.49 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.45 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.42 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.39 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.39 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.39 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.37 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.34 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.33 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.32 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.31 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.31 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.31 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.29 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.28 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.28 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.24 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.21 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.2 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.2 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.19 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.18 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.18 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.17 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.17 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.15 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.15 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.15 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.15 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.14 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.13 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.11 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.11 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.11 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.1 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.08 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.07 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.07 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.07 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.04 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.04 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.02 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.99 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.98 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.98 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.97 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.96 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.95 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.94 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.94 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.93 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.92 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.92 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.91 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.89 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.88 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.88 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.87 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.86 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.76 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.76 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.74 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.72 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.71 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.69 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.66 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.65 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.61 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.61 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.61 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.6 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.57 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.57 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.57 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.56 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.56 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.54 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.54 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.54 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.53 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.53 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.51 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.48 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.4 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.38 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.25 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.24 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.23 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.15 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.12 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.1 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.1 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.08 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.02 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.01 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.0 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.98 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.97 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.96 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.96 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.95 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.86 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.84 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 97.83 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.74 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.7 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.7 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.67 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.66 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.66 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.63 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.63 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.6 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.59 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.58 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.58 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.57 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.56 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.54 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.48 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.46 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.39 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.38 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.36 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.34 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.26 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.25 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.25 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.24 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.2 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.13 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.1 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.09 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 97.08 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.04 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.03 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.01 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.99 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 96.89 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 96.87 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 96.8 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.78 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.72 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 96.7 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.48 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.45 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.37 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.35 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 96.26 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.24 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 96.23 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 96.18 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.84 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 95.79 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 95.76 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.66 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.65 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.64 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.43 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 95.38 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.33 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 94.65 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 94.36 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 94.3 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.15 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 94.1 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 93.57 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 93.57 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.29 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 93.1 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 92.85 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 92.65 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 92.26 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.84 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 91.48 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 91.31 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 91.21 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 91.06 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.47 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 90.35 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.25 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.73 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.29 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 88.42 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.27 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.56 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.56 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 83.19 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 82.93 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.43 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 80.61 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 80.36 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=1.1e-16 Score=158.53 Aligned_cols=103 Identities=24% Similarity=0.399 Sum_probs=88.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+++.+|||||||+|.++..|+++ +|+|+|+|+.|+..|+. .+...+.. ..+...+++++|+++++||+|+|..+++
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASS-FAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 93 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhh-hhcccccccccccccccccccccccccceeeeeceee
Confidence 45689999999999999999887 99999999999988874 44555554 4556667899999999999999998866
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+ +++..+|+++.|+|||||+++++.+
T Consensus 94 ~~-~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 94 HF-SDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 65 8999999999999999999999864
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.69 E-value=9e-17 Score=157.95 Aligned_cols=112 Identities=13% Similarity=0.281 Sum_probs=90.5
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPS 336 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d 336 (666)
.++++.+.- ++..+|||||||+|.++..+++. +|+|+|+|+.|+..|+.... ..+.+ ..+...+.+.+|+++
T Consensus 5 ~~ll~~~~l----~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~-~~~~~~i~~~~~d~~~l~~~~ 79 (231)
T d1vl5a_ 5 AKLMQIAAL----KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIE-GNGHQQVEYVQGDAEQMPFTD 79 (231)
T ss_dssp HHHHHHHTC----CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHhcCC----CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccc-ccccccccccccccccccccc
Confidence 445555441 45589999999999999999877 89999999999988865443 44444 356667889999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++||+|+|..+++|+ +|+..+|+++.|+|||||++++.+.
T Consensus 80 ~~fD~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccc-CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999999999886666 8999999999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=1.9e-16 Score=154.22 Aligned_cols=103 Identities=20% Similarity=0.342 Sum_probs=86.3
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||||||+|.++..|++. +|+|+|+|+.|+..|+. .+...+........+++.+++++++||+|+|..+++|+
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~-~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKARE-YAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhh-hhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 3468999999999999999876 89999999999988874 44455555556666789999999999999999997777
Q ss_pred c-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 T-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+...+|+++.|+|||||.+++...
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 3 2556899999999999999998853
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.62 E-value=6.7e-16 Score=157.43 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=92.9
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~L 332 (666)
..+.+.+.+.....-.++.+|||||||+|.++..|+++ +|+|+|+++.++..++. .+...|+. ..+...+++++
T Consensus 51 ~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~-~~~~~gl~~~v~~~~~d~~~l 129 (282)
T d2o57a1 51 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKYGSFLEI 129 (282)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhc-ccccccccccccccccccccc
Confidence 33444444432222245689999999999999988764 89999999999987764 44445554 34566678999
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+++++||+|+|..+++|+ +++..+|+++.|+|||||.|++++.
T Consensus 130 ~~~~~sfD~V~~~~~l~h~-~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp SSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhccchhhhc-cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999999998888 7899999999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.3e-15 Score=150.22 Aligned_cols=98 Identities=20% Similarity=0.358 Sum_probs=82.0
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+..+|||||||+|.++..|++. +|+|+|+|+.|+..| ++++... +...+++++++++++||+|+|...++|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a-----~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVA-----REKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHH-----HHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeeccccccccc-----ccccccc-cccccccccccccccccceeeecchhhh
Confidence 4578999999999999999987 899999999887544 4455444 3445788999999999999987655666
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+|+..+|+++.|+|||||+++++.+
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 68999999999999999999999864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.58 E-value=6.1e-15 Score=145.17 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=86.5
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHHHcCCCceEEee
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAMVAAF 327 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~ 327 (666)
+++...+.+...+.... .+..+|||||||+|..+..|++. +|+|+|+|+.|+..|+.+.+. .+....+...
T Consensus 21 ~Y~~~~~~i~~~~~~~~--~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~~~~~ 97 (225)
T d1im8a_ 21 GYSNIITAIGMLAERFV--TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEIL 97 (225)
T ss_dssp THHHHHHHHHHHHHHHC--CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhc--CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccchhhhc
Confidence 34444444444443322 34579999999999988877642 899999999999888754443 3333323222
Q ss_pred cccCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEECCCCC
Q 005981 328 ATRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQPVYK 381 (666)
Q Consensus 328 d~e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~P~~~ 381 (666)
..+..+++...+|+|+|+.+++++. ++...+|++++|+|||||.|++.+.....
T Consensus 98 ~~d~~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 98 CNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp CSCTTTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred cchhhccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence 2334455667899999988866653 35669999999999999999998753333
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=6.5e-15 Score=146.83 Aligned_cols=116 Identities=9% Similarity=0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~ 329 (666)
....++.|.+.+.- .++.+|||||||+|.++..++++ +|+|+|+|+.++..++ +.+.+.|+.. .+...|+
T Consensus 18 ~~~~~~~l~~~~~l----~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 18 TEEKYATLGRVLRM----KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp CHHHHHHHHHHTCC----CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHHcCC----CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHH
Confidence 44566777777652 45589999999999999888754 8999999999998876 4566666643 4555677
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+ +++++||+|+|..+++|+ .+...++++++|+|||||++++..+
T Consensus 93 ~~~-~~~~~fD~v~~~~~~~~~-~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 93 AGY-VANEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TTC-CCSSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhc-cccCceeEEEEEehhhcc-CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 777 467999999999987777 7899999999999999999999863
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=1.3e-14 Score=140.35 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=78.5
Q ss_pred CeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccccCh
Q 005981 276 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD 355 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~ 355 (666)
.+|||||||+|.++..+. +++|+|+|+.++.. +++++ ..+...+++.+++++++||+|+|+.+++|+ +++
T Consensus 38 ~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~~~-----a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK--IKIGVEPSERMAEI-----ARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFV-DDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHT--CCEEEESCHHHHHH-----HHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGS-SCH
T ss_pred CeEEEECCCCcccccccc--eEEEEeCChhhccc-----ccccc--cccccccccccccccccccccccccccccc-ccc
Confidence 479999999999998885 47999999987754 44444 345666789999999999999999997777 789
Q ss_pred HHHHHHHHHhccCCeEEEEEEC
Q 005981 356 GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 356 ~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+|+++.|+|+|||.+++.++
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEec
Confidence 9999999999999999999975
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=1.8e-14 Score=142.98 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+..+|||||||+|.++..|++. +|+|+|+|+.|+..|+.+ +.+.+....+...++++++++ ++||+|+|....++
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~-~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccc-cccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 45578999999999999999877 899999999999888754 445666666777789999987 68999999754454
Q ss_pred cc--cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~--~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. ++...+|++++++|||||++++..+
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 43 2345899999999999999999854
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.9e-14 Score=141.45 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=86.3
Q ss_pred HHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCC
Q 005981 262 IAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQ 337 (666)
Q Consensus 262 L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~ 337 (666)
+.+.+..........+|||||||+|.++..|+.. +|+|+|+|+.|+..|+..... .+... .+...++++++++++
T Consensus 48 l~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~-~~~~~~~f~~~d~~~~~~~~~ 126 (222)
T d2ex4a1 48 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE-EGKRVRNYFCCGLQDFTPEPD 126 (222)
T ss_dssp HHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGG-GGGGEEEEEECCGGGCCCCSS
T ss_pred HHHHHHhccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccc-ccccccccccccccccccccc
Confidence 4444433222345578999999999999987654 799999999999887644333 33332 456667889999899
Q ss_pred CeeEEEecccccccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 338 AFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 338 sFDlVv~s~~l~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+||+|+|..+++|+ +++ ..+|++++++|||||.+++...
T Consensus 127 ~fD~I~~~~~l~h~-~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 127 SYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccc-hhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 99999999998887 443 4899999999999999999853
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.50 E-value=4.3e-14 Score=144.37 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=91.9
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e 330 (666)
+.|++.+.+.+..+ .++.+|||||||+|.++..|++. +|+|+|+|+.++..++.+ ....+....+...|++
T Consensus 12 ~d~l~~l~~~~~~~---~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~-~~~~~~~~~f~~~d~~ 87 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDAT 87 (281)
T ss_dssp HHHHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHH-HHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHHHhcc---CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcc-cccccccccccccccc
Confidence 34666776665433 35589999999999999888763 699999999999887643 3444555556666788
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++++ ++||+|+|+.+++|+ +++..+|+++.++|||||.+++.++
T Consensus 88 ~~~~~-~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 88 EIELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp TCCCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccc-CCceEEEEehhhhcC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 88876 579999999987766 8899999999999999999998863
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.3e-14 Score=144.30 Aligned_cols=112 Identities=16% Similarity=0.293 Sum_probs=85.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
..++.+.+.++ .+..+|||||||+|.++..|++. .++|+|+|+.++..+ +++.....+...+++++
T Consensus 72 ~~~~~l~~~~~-----~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a-----~~~~~~~~~~~~d~~~l 141 (268)
T d1p91a_ 72 AIVAQLRERLD-----DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA-----AKRYPQVTFCVASSHRL 141 (268)
T ss_dssp HHHHHHHHHSC-----TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHH-----HHHCTTSEEEECCTTSC
T ss_pred HHHHHHHHhcC-----CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhh-----hcccccccceeeehhhc
Confidence 33444444444 45679999999999999888765 789999999887544 44444556667789999
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~ 387 (666)
|+++++||+|++..+.++ ++|+.|+|||||+++++++ ..+.+.+++
T Consensus 142 ~~~~~sfD~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p-~~~~l~el~ 187 (268)
T d1p91a_ 142 PFSDTSMDAIIRIYAPCK--------AEELARVVKPGGWVITATP-GPRHLMELK 187 (268)
T ss_dssp SBCTTCEEEEEEESCCCC--------HHHHHHHEEEEEEEEEEEE-CTTTTHHHH
T ss_pred cCCCCCEEEEeecCCHHH--------HHHHHHHhCCCcEEEEEee-CCcchHHHH
Confidence 999999999998766444 5789999999999999975 556555544
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.49 E-value=6.7e-14 Score=139.18 Aligned_cols=117 Identities=21% Similarity=0.311 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
....+.+.+.+... +..+++|||||||+|.++..|+++ +|+|+|+|+.|+..|+. .+...+....+...|+..++
T Consensus 21 ~~~~~~~~~~~~~~--~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~-~~~~~~~~v~~~~~d~~~~~ 97 (246)
T d1y8ca_ 21 KKWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN-KFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHH-HHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHh--CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccc-cccccCccceeeccchhhhc
Confidence 33444555554431 244579999999999999999987 89999999999988874 44556666667777788887
Q ss_pred CCCCCeeEEEeccccccccc---ChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~---d~~~~L~el~RvLkPGG~lv~st 376 (666)
++ ++||+|+|....+++.. +...+|++++++|||||.|++..
T Consensus 98 ~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 98 IN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 64 68999998643333333 34579999999999999999874
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=1.5e-13 Score=132.60 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=81.5
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
.+|||||||+|..+..|+++ +|+|+|+|+.+++.++. .+.+.++.. .+...|...+++ +++||+|+|..+++|+.
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLER-IKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE 109 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHH-Hhhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence 58999999999999999987 99999999999988764 445566654 344556677775 58999999999988774
Q ss_pred cC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 353 RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 ~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. ...+++++.++|+|||++++.+.
T Consensus 110 ~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 110 AQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp TTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 33 34899999999999999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=3e-13 Score=139.15 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=95.6
Q ss_pred CCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC
Q 005981 245 PGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP 321 (666)
Q Consensus 245 pgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~ 321 (666)
+.+...+.......++.+.+.+. + .++.+|||||||.|.++.+++++ +|+|+++|+..+..++ +.+.+.++.
T Consensus 36 ~~~~~tL~~Aq~~k~~~~~~~l~-l---~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~ 110 (291)
T d1kpia_ 36 ERPDMTLEEAQYAKRKLALDKLN-L---EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSP 110 (291)
T ss_dssp SSTTCCHHHHHHHHHHHHHHTTC-C---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCS
T ss_pred cCCCCCHHHHHHHHHHHHHHhcC-C---CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccc
Confidence 33334444445566777777775 2 46689999999999999999865 8999999998877765 445566666
Q ss_pred ceEEeecccCCCCCCCCeeEEEecccccccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 322 AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 322 ~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+... ..+.++.+++||.|+|..++.|+.+. ...+++++.|+|||||.+++.+.
T Consensus 111 ~~v~~~-~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 111 RRKEVR-IQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp SCEEEE-ECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred hhhhhh-hhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 543332 23445667899999999999998532 46899999999999999999865
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.42 E-value=5.5e-13 Score=131.14 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=77.9
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
+.+|||||||+|.++..|++. +|+|+|+|+.++..++.+. .-...+...+.+.+++ +++||+|+|..+++|+
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~----~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~- 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL----KDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI- 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS----CSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC-
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc----cccccccccccccccc-ccccccccccceeEec-
Confidence 367999999999999999886 9999999998876554221 1123344456677765 5899999999987777
Q ss_pred cChHHHHHHHH-HhccCCeEEEEEEC
Q 005981 353 RDDGILLLEVN-RMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 ~d~~~~L~el~-RvLkPGG~lv~st~ 377 (666)
+++..+|.++. |+|||||.++++.+
T Consensus 95 ~d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 95 DDPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 89999999998 89999999999965
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.39 E-value=2.5e-13 Score=136.79 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
....+|||+|||+|.++..|+.. +|+++|+++.|++.|+.+.. +.. ..+...+++.+++++++||+|+|..++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA---GMPVGKFILASMETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT---TSSEEEEEESCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc---ccccceeEEccccccccCCCccceEEeeccc
Confidence 35578999999999999887754 79999999999877754322 222 234556788999989999999999998
Q ss_pred cccccCh--HHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~--~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+ .+. ..+|+++.++|||||++++...
T Consensus 169 ~hl-~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 169 IYL-TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-chhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 888 443 4889999999999999999863
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=5.5e-13 Score=136.37 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEe--e
Q 005981 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAA--F 327 (666)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~--~ 327 (666)
......++.+++.+. + .++.+|||||||+|.++.+++++ +|+|+|+|+.++..++ +.+++.++...+.. .
T Consensus 35 ~AQ~~k~~~~~~~l~-l---~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~ 109 (280)
T d2fk8a1 35 EAQYAKVDLNLDKLD-L---KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQ 109 (280)
T ss_dssp HHHHHHHHHHHTTSC-C---CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEES
T ss_pred HHHHHHHHHHHHHcC-C---CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhh
Confidence 334456777777775 2 45689999999999999988764 8999999999887775 44555665543322 2
Q ss_pred cccCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 328 ATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 328 d~e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...+ +++||.|++..+++|+.. +...+|+++.|+|||||.+++.+.
T Consensus 110 d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 110 GWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp CGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 33332 478999999999999853 347899999999999999999753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.39 E-value=3e-13 Score=135.41 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCC-CCCCeeEEEecc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPY-PSQAFDLIHCSR 346 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf-~d~sFDlVv~s~ 346 (666)
.+..+|||||||+|..+..+++. +|+|+|+|+.|+..|+.+ +...+. ...+...|+...++ .+++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 34579999999999888888754 699999999999888643 333332 23455566655665 467899999998
Q ss_pred cccccccC---hHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d---~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++|+..+ ...+|+++.|+|||||+|+++++
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 87777543 34799999999999999999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=4.2e-13 Score=135.43 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=83.2
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
..+..++.+.+.. .++.+|||+|||+|.++..+++. +|+|+|+++.++..++. .++.+++...+...+...
T Consensus 106 TT~l~l~~l~~~~------~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~-na~~n~~~~~~~~~d~~~ 178 (254)
T d2nxca1 106 TTRLALKALARHL------RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEGSLEA 178 (254)
T ss_dssp HHHHHHHHHHHHC------CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEESCHHH
T ss_pred hhhHHHHHHHhhc------CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHH-HHHHcCCceeEEeccccc
Confidence 3344444444433 34589999999999988887765 89999999999988874 566677776666555433
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++.++||+|+++... .....++.++.++|||||++++++.
T Consensus 179 -~~~~~~fD~V~ani~~----~~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 179 -ALPFGPFDLLVANLYA----ELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp -HGGGCCEEEEEEECCH----HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccccccchhhhcccc----ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 3456899999976432 2346788999999999999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-12 Score=132.50 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC----------CeEEEeCCcchHHHHHHHHHHHcCCCceE---Eeeccc------CCC
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAPAMV---AAFATR------RLP 333 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiS~~~l~~a~~~~a~~rg~~~~~---~~~d~e------~Lp 333 (666)
++..+|||||||+|.++..|++. .++|+|+|+.|+..+..+.+....+.... .....+ ..+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 33447999999999887766432 57999999999987765554433333321 111111 235
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|+|..+++|+ +++..+|++++++|+|||++++...
T Consensus 119 ~~~~~fD~I~~~~~l~~~-~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYV-KDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SSCCCEEEEEEESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceeEEEEccceecC-CCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 678999999999996666 8899999999999999999999864
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.33 E-value=4.6e-13 Score=126.57 Aligned_cols=104 Identities=10% Similarity=-0.040 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcC-------------CCceEEeecccCCC-CCC
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG-------------APAMVAAFATRRLP-YPS 336 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg-------------~~~~~~~~d~e~Lp-f~d 336 (666)
.++.+|||+|||+|..+.+|+++ +|+|+|+|+.|+..++.+ +.+.+ ....+...+...++ ...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTE-RGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHH-HCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHH-hccccchhhhhhhhhccccccceecccccccccccc
Confidence 45689999999999999999977 999999999999877543 22221 11233444555555 335
Q ss_pred CCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 337 QAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+||+|++..+++++..+ ...+++++.++|||||.+++...
T Consensus 98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 789999998887776432 45899999999999999888753
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=3e-12 Score=131.21 Aligned_cols=123 Identities=12% Similarity=0.139 Sum_probs=91.9
Q ss_pred CCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc-
Q 005981 247 GGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA- 322 (666)
Q Consensus 247 ggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~- 322 (666)
+...+.......++.+++.+. + +++.+|||||||.|.++.++++. +|+|+++|+..+..++. .+.+.++..
T Consensus 39 ~~~tL~eAQ~~k~~~~~~~l~-l---~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~-~~~~~g~~~~ 113 (285)
T d1kpga_ 39 DDMTLQEAQIAKIDLALGKLG-L---QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSENLRS 113 (285)
T ss_dssp TTCCHHHHHHHHHHHHHTTTT-C---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCCCSC
T ss_pred CCCCHHHHHHHHHHHHHHHcC-C---CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHH-HHHhhhhhhh
Confidence 333444455566777777775 2 56689999999999999998865 99999999988777764 334445443
Q ss_pred -eEEeecccCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 323 -MVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 323 -~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...|...+ +++||.|++..++.|+.. +...+++++.|+|||||.+++.+.
T Consensus 114 v~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 114 KRVLLAGWEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp EEEEESCGGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hHHHHhhhhcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 2333344444 368999999999999853 457899999999999999998764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.9e-12 Score=127.69 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHH-----------------cCCCceEEeecccCCC
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALE-----------------RGAPAMVAAFATRRLP 333 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~-----------------rg~~~~~~~~d~e~Lp 333 (666)
..+.+|||+|||+|..+.+|++. +|+|+|+|+.++..++.+.... .+....+...|...++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 34579999999999999999987 9999999999887665433211 0112233444544443
Q ss_pred -CCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 334 -YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 -f~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
...+.||+|+...+++|+.++. ..+++++.++|||||++++.++
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 5578999999998888886443 5899999999999999888753
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.31 E-value=2.7e-12 Score=123.56 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=81.8
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEeecccCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRLPY 334 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~d~e~Lpf 334 (666)
+.+++.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...++.. .+...|... ++
T Consensus 42 ~lLi~~l~~----~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~-~~~~l~~~~i~~~~~d~~~-~~ 115 (194)
T d1dusa_ 42 KILVENVVV----DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENI-KLNNLDNYDIRVVHSDLYE-NV 115 (194)
T ss_dssp HHHHHHCCC----CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHTTCTTSCEEEEECSTTT-TC
T ss_pred HHHHHhCCc----CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHH-HHhCCccceEEEEEcchhh-hh
Confidence 345555542 45689999999999999999876 8999999999988877544 3444432 344444433 56
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++||+|+|+..+++..+....++.++.++|+|||.+++..
T Consensus 116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 678999999887755442334688999999999999998864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=7.5e-13 Score=130.94 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=80.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc--c
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT--R 330 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~--e 330 (666)
..+.+.+++.+. ..+.+|||||||+|.++.++++. +|+++|+++.++..++.. +...+........+. .
T Consensus 40 ~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 40 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW-APRQTHKVIPLKGLWEDV 113 (229)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHH-GGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHH-hhhccccccccccccccc
Confidence 445556665554 34579999999999999999875 899999999998777643 333333333333322 2
Q ss_pred CCCCCCCCeeEEEe-----cccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 331 RLPYPSQAFDLIHC-----SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~-----s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
..++++++||.|+. .....|+ .+...+++++.|+|||||.|++.
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~-~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccceeecccccccccccc-cCHHHHHHHHHHHcCCCcEEEEE
Confidence 33567889999973 3444444 56778999999999999999875
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=1.8e-12 Score=132.43 Aligned_cols=114 Identities=17% Similarity=0.287 Sum_probs=78.9
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-----eEEeecc-
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-----MVAAFAT- 329 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-----~~~~~d~- 329 (666)
+.+.+.+.+.. ....+|||||||+|.++..|+++ +|+|+|+|+.|+..|+..... ++... .+...+.
T Consensus 44 ~~~~l~~~l~~----~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (292)
T d1xvaa_ 44 YKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWN-RRKEPAFDKWVIEEANWL 118 (292)
T ss_dssp HHHHHHHHHHH----TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTTSHHHHTCEEEECCGG
T ss_pred HHHHHHHHhhh----cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHh-cccccccceeeeeecccc
Confidence 34445555542 23478999999999999999887 999999999999888754433 32221 1222221
Q ss_pred ---cCCCCCCCCeeEEEecc-ccccccc------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 ---RRLPYPSQAFDLIHCSR-CRINWTR------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 ---e~Lpf~d~sFDlVv~s~-~l~h~~~------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+|. .++||+|+|.. ++.|+.. +...+|+++.|+|||||.|++...
T Consensus 119 ~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 119 TLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 12333 47899999865 4555532 244799999999999999999864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.28 E-value=7.5e-12 Score=119.69 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=87.8
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-c-eEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-A-MVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~-~~~~~d~ 329 (666)
........++..+.. .++.+|||+|||+|.++..++.. +|+++|+++.++..++.+ ++..++. . .+...++
T Consensus 17 t~~eir~~il~~l~~----~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~~~~gda 91 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEP----GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDA 91 (186)
T ss_dssp CCHHHHHHHHHHHCC----CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCH
T ss_pred ChHHHHHHHHHhcCC----CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceEEEECch
Confidence 344555566666542 46689999999999999999877 899999999999888754 5556653 2 3455566
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++...||+|++.... .+...++.++.+.|||||.+++...
T Consensus 92 ~~~~~~~~~~D~v~~~~~~----~~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 92 PEALCKIPDIDIAVVGGSG----GELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HHHHTTSCCEEEEEESCCT----TCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhcccccCCcCEEEEeCcc----ccchHHHHHHHHHhCcCCEEEEEee
Confidence 6666777899999987553 3447889999999999999998753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.28 E-value=2.3e-12 Score=125.85 Aligned_cols=106 Identities=19% Similarity=0.194 Sum_probs=82.4
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCCC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTY 579 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~y 579 (666)
+..+..+++.+. .|||+|||.|.++.+|+++|+ +|+.+| ++++++.|.++ |+ +.+++..+|.++.-
T Consensus 6 ~ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~ 78 (231)
T d1vl5a_ 6 KLMQIAALKGNE--EVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 78 (231)
T ss_dssp HHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHhcCCCCcC--EEEEecccCcHHHHHHHHhCC-----EEEEEECCHHHHhhhhhccccccccccccccccccccccc
Confidence 445556666553 499999999999999999987 566666 46777776543 54 66777777776632
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.+||+|+|..++.|..+ .+.+|.|+.|+|||||+++|.|
T Consensus 79 ~~~fD~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 79 DERFHIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp TTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 399999999999988765 4799999999999999999974
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.6e-12 Score=127.57 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=76.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc---------------------------
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--------------------------- 322 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--------------------------- 322 (666)
.++.+|||||||+|.++..++.. +|+|+|+|+.++..++.+.........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 34578999999999988777654 799999999999888754332111000
Q ss_pred ---eEEee----cccCCCCCCCCeeEEEeccccccccc---ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 323 ---MVAAF----ATRRLPYPSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 323 ---~~~~~----d~e~Lpf~d~sFDlVv~s~~l~h~~~---d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..... +....++++++||+|++..+++|... +...+++++.|+|||||+|++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 00000 11223567899999999999888864 345789999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=1.3e-11 Score=120.89 Aligned_cols=112 Identities=22% Similarity=0.333 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCC
Q 005981 500 YWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDT 578 (666)
Q Consensus 500 ~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~ 578 (666)
.|.+.+..+......+.. .|||+|||+|.++..|+++|+ .|+.+| ++.+++.|.+++..-....-.|.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~---~vLDiGcG~G~~~~~l~~~~~-----~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~ 98 (246)
T d2avna1 27 LYHRLIGSFLEEYLKNPC---RVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPF 98 (246)
T ss_dssp HHHHHHHHHHHHHCCSCC---EEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCS
T ss_pred HHHHHHHHHHHHhcCCCC---EEEEECCCCchhcccccccce-----EEEEeeccccccccccccccccccccccccccc
Confidence 344555444433222222 489999999999999999987 566666 46899999999985444455566653
Q ss_pred CCCccceEEec-cccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 579 YPRTYDLLHAA-GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 579 yp~tyDliha~-~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
-+++||+|.|. +++.|..+ ...+|.|+.|+|||||.++++.
T Consensus 99 ~~~~fD~ii~~~~~~~~~~d---~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 99 PSGAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CTTCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeeecchhhhhhh---HHHHHHHHHhhcCcCcEEEEEE
Confidence 34999999985 57777655 4789999999999999999974
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=1.1e-11 Score=122.05 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=81.3
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCCCC-C
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-R 581 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~yp-~ 581 (666)
+.+.++.|. .|||+|||+|.++..|++++. +|+.+| ++.++++|.++ |+ +.++....|.++ +| .
T Consensus 10 ~~~~~~~~~--rILDiGcGtG~~~~~la~~~~-----~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~ 81 (234)
T d1xxla_ 10 KTAECRAEH--RVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDD 81 (234)
T ss_dssp HHHTCCTTC--EEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTT
T ss_pred HHhCCCCCC--EEEEeCCcCcHHHHHHHHhCC-----eEEEEeCChhhhhhhhhhhccccccccccccccccccc-cccc
Confidence 445566664 399999999999999999976 677787 46788776544 44 556666667765 45 9
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+||+|+|.++|.+..+ ...+|.|+.|+|||||++++.|
T Consensus 82 ~fD~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 82 SFDIITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp CEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceeeeeceeecccC---HHHHHHHHHHeeCCCcEEEEEE
Confidence 9999999999988654 5899999999999999999974
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.20 E-value=4.2e-12 Score=128.83 Aligned_cols=101 Identities=22% Similarity=0.279 Sum_probs=78.0
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhc----cc---cccccccCCCCCCCCCc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~t 582 (666)
.+++.+. .|||+|||.|+++.+|+++ |+ +|+.+| ++.+++.+.++ |+ +.+.+...+.++.-+.+
T Consensus 63 ~~l~~~~--~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~s 135 (282)
T d2o57a1 63 GVLQRQA--KGLDLGAGYGGAARFLVRKFGV-----SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNS 135 (282)
T ss_dssp TCCCTTC--EEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTC
T ss_pred cCCCCCC--EEEEeCCCCcHHHhhhhccCCc-----EEEEEeccchhhhhhhcccccccccccccccccccccccccccc
Confidence 3455553 5999999999999999987 77 455555 34666666554 55 66666666666533399
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
||+|+|..+|.|..++ ..+|.|+.|+|||||+++|.|
T Consensus 136 fD~V~~~~~l~h~~d~---~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 136 YDFIWSQDAFLHSPDK---LKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp EEEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhccchhhhccCH---HHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999988754 799999999999999999974
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.5e-11 Score=122.09 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=80.3
Q ss_pred HHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhc----cc---cccccccCCCC
Q 005981 506 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPF 576 (666)
Q Consensus 506 ~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~~~ce~~ 576 (666)
+...+.+++..|. .|||+|||+|+++.+|+++ |+ .|+.+| ++.+++.+.++ |+ +.+.+.--+.+
T Consensus 23 ~~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~-----~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 23 ATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGI-----TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCC-----EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 3455677787774 4999999999999999876 66 344555 35677666655 66 45554443443
Q ss_pred CCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 577 DTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 577 ~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..+.+||+|+|.+++.+..+. ..+|.||.|+|||||+++|.+
T Consensus 96 -~~~~~fD~v~~~~~~~~~~d~---~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp -CCSSCEEEEEEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEE
T ss_pred -cccCceeEEEEEehhhccCCH---HHHHHHHHHHcCcCcEEEEEe
Confidence 235899999999999988765 799999999999999999974
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.18 E-value=3.5e-11 Score=120.34 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
..++|||||||+|.++..++++ +++++|+ +.++..++...+ +.++.. .+...|... + ...+||+|+++.+
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~rv~~~~~D~~~-~-~~~~~D~v~~~~v 155 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK-DEGLSDRVDVVEGDFFE-P-LPRKADAIILSFV 155 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH-HTTCTTTEEEEECCTTS-C-CSSCEEEEEEESC
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHH-Hhhcccchhhccccchh-h-cccchhheeeccc
Confidence 4579999999999999988865 7888998 557776664444 444432 334444322 2 2357999999999
Q ss_pred ccccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++||.++ ...+|++++|+|||||.+++...
T Consensus 156 lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 156 LLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 9888422 23789999999999999999864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.18 E-value=1.5e-11 Score=122.08 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=79.8
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
+....|..-+..+ .-.++.+|||||||+|.++.+|++. .|+|+|+|+.|+..+.. .+..+.....+........
T Consensus 58 klaA~i~~gl~~l-~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~-~a~~~~ni~~i~~d~~~~~ 135 (230)
T d1g8sa_ 58 KLAAAIIKGLKVM-PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAERENIIPILGDANKPQ 135 (230)
T ss_dssp HHHHHHHTTCCCC-CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTCTTEEEEECCTTCGG
T ss_pred HHHHHHHhhHHhC-CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH-HHhhhcccceEEEeeccCc
Confidence 3445555555432 2256789999999999998888864 79999999999977653 3444432222322222233
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++.+..+|++++...++++ .+...++.++.+.|||||+++++.
T Consensus 136 ~~~~~~~~v~~i~~~~~~~-~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 136 EYANIVEKVDVIYEDVAQP-NQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp GGTTTCCCEEEEEECCCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeEEeeccccch-HHHHHHHHHHHHhcccCceEEEEe
Confidence 3556677776655554444 677899999999999999999884
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.17 E-value=1.9e-11 Score=122.85 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=95.1
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cccccccccCCCCCCCCCccceEEeccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Glig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
..-.+|||+|||.|.++.+|+.+++. +|..+| ++.+++.|.++ ..+-+++.-.+.++.-+.+||+|+|..+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~----~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA----TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS----EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc----eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence 44567999999999999999877432 455666 36788888765 3344555555556543589999999999
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------HHHHHHHHHHhcCcEEEEEeccC
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------VMDELQEIGKAMGWHVTLRETAE 648 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------~~~~~~~i~~~l~W~~~~~~~~~ 648 (666)
|.|..+. ++..+|.++.|+|||||+++|.|... ....++++++.-.+++...+.+.
T Consensus 168 l~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~ 239 (254)
T d1xtpa_ 168 AIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred ccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeC
Confidence 9998753 35688999999999999999974321 25678899998899887655443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=1.2e-11 Score=126.69 Aligned_cols=115 Identities=11% Similarity=0.174 Sum_probs=86.6
Q ss_pred HHHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCc
Q 005981 504 IIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 504 ~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~t 582 (666)
.++.+.+.++++.|.- |||+|||.|++|.+++++ |+.|.++++++.......+.+.+.|+.+-..--+..+...|.+
T Consensus 50 k~~~~~~~l~l~~G~~--VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 127 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMT--LLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 127 (285)
T ss_dssp HHHHHHTTTTCCTTCE--EEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred HHHHHHHHcCCCCCCE--EEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence 3445667778887744 999999999999998877 8877777776654444445556677744433333334555789
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
||-|.|.++|.|.+++ +...++.++.|+|||||.+++.
T Consensus 128 fD~i~si~~~eh~~~~-~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CSEEEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred ccceeeehhhhhcCch-hHHHHHHHHHhhcCCCCcEEEE
Confidence 9999999999998653 4578999999999999999984
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=1.3e-11 Score=125.97 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=81.1
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCCCCChhHH----HhccccccccccCCCCCCC
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVI----YDRGLIGVMHDWCEPFDTY 579 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~~~l~~~----~erGlig~~~~~ce~~~~y 579 (666)
++...+.++++.|. .|||+|||.|+++.+++++ |+.|..+++. +++++.| .+.|+.......+..+...
T Consensus 41 ~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls----~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~ 114 (280)
T d2fk8a1 41 VDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGLTLS----KNQHARCEQVLASIDTNRSRQVLLQGWEDF 114 (280)
T ss_dssp HHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEEESC----HHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred HHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCceeEEEecch----HHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence 33455566677664 3999999999999999987 8844444443 3555554 4457744443333344556
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|.+||.|.+.++|.|.+++ +...++.++.|+|||||.++|.
T Consensus 115 ~~~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCCCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccchhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEE
Confidence 7999999999999998754 5679999999999999999986
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=2.5e-11 Score=116.89 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=87.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
.|||+|||+|.++..|.+. +.+| ++.+++.+.+|++ -+..+.+|.++..+++||+|+|..++.|..+
T Consensus 39 ~vLDiGcG~G~~~~~~~~~---------~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d-- 106 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKIK---------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVDD-- 106 (208)
T ss_dssp CEEEETCTTSTTHHHHTCC---------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred eEEEECCCCcccccccceE---------EEEeCChhhccccccccc-ccccccccccccccccccccccccccccccc--
Confidence 4999999999999998542 3455 4789999999985 4677777877766699999999999999864
Q ss_pred CHHHHHHHhhhcccCCeEEEEEeChh------------------------HHHHHHHHHHhcCcEEE
Q 005981 600 NMSTIMLEMDRMLRPGGHVYIRDSID------------------------VMDELQEIGKAMGWHVT 642 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii~d~~~------------------------~~~~~~~i~~~l~W~~~ 642 (666)
...+|.|+.|+|||||+++|.+... ..+++..++++...+..
T Consensus 107 -~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 107 -PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred -cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 5899999999999999999973210 14678888998888643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.15 E-value=3.5e-11 Score=117.29 Aligned_cols=99 Identities=12% Similarity=0.213 Sum_probs=77.6
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC--CCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp--f~d~sFDlVv~s~~l 348 (666)
..|||||||+|.++..|++. +++|+|+++.++..+. +.+.+.++.+ .+...|+..+. ++++++|.|++...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp- 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence 57999999999998888764 8999999999998776 4555667654 44555666655 78899999986654
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~--------~~~L~el~RvLkPGG~lv~st 376 (666)
.+|.... ..+|.++.|+|||||.|.+.|
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5653332 379999999999999999986
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3e-11 Score=118.10 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=92.8
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----c--cccccccCCCCCCCCCccceEEeccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L--IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG----l--ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
-..|||+|||.|.++.+|++++.. .|+.+| ++++++.|.++- . +.+++.-.+.++.-+.+||+|+|.++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~----~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFR----EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCS----EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCEEEEeccCCCHhhHHHHHhcCC----EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 356999999999999998766431 456666 468888887762 2 34445555556644599999999999
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------h-----HHHHHHHHHHhcCcEEEEEec
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------D-----VMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------~-----~~~~~~~i~~~l~W~~~~~~~ 646 (666)
+.|..+. ++..+|.++.|+|||||.++|.|.. + ..+.++++++.-.+++.....
T Consensus 137 l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 137 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred cccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 9998753 3468999999999999999997331 1 268899999999998765543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=2e-11 Score=125.23 Aligned_cols=116 Identities=9% Similarity=0.099 Sum_probs=83.1
Q ss_pred HHHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCc
Q 005981 504 IIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 504 ~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~t 582 (666)
.++...+.++++.|.- |||+|||.||++.+|+++ |+.|..+++.+.......+.+.+.||....+.-+..+...+.+
T Consensus 49 k~~~~~~~l~l~~G~~--VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 126 (291)
T d1kpia_ 49 KRKLALDKLNLEPGMT--LLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 126 (291)
T ss_dssp HHHHHHHTTCCCTTCE--EEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHHHHhcCCCCCCE--EEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence 3445667778887753 999999999999999866 8854444444332222234455668854444333344445689
Q ss_pred cceEEeccccccCCCC------CCHHHHHHHhhhcccCCeEEEEE
Q 005981 583 YDLLHAAGLFSVESKR------CNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 583 yDliha~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
||.|.|.++|.|..+. -+.+.++.++.|+|||||.+++.
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 9999999999997653 34679999999999999999985
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.7e-11 Score=122.05 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=74.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC----------------------------
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---------------------------- 321 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---------------------------- 321 (666)
..+.+|||||||+|.+...++.. +|+|+|+|+.|+..++.......+..
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 35679999999999877655433 79999999999987764332211100
Q ss_pred --ceEEeecc------cCCCCCCCCeeEEEecccccccccCh---HHHHHHHHHhccCCeEEEEEEC
Q 005981 322 --AMVAAFAT------RRLPYPSQAFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 322 --~~~~~~d~------e~Lpf~d~sFDlVv~s~~l~h~~~d~---~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+...|+ ...++..++||+|+|..++++...+. ..+++++.++|||||+|++.+.
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 00111121 12234567899999999988886553 5889999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=1.8e-11 Score=118.23 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=75.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc-cccccccCCCCCCCCCccceEEecccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
.|||+|||+|.++..|++.|+ +|+.+| ++++++.|.++ |. +-..+.-.+.++...++||+|.|..+|.+
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~-----~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF-----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCcchhhhhHhhhhc-----ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 489999999999999999987 566677 46888888765 33 33344444445433499999999999998
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
... .++..+|.|+.|+|||||.++|.+.
T Consensus 115 ~~~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 115 FEP-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 753 2567899999999999999999854
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.11 E-value=1.8e-10 Score=116.38 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=84.2
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcC--CC-ceEEeeccc
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERG--AP-AMVAAFATR 330 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg--~~-~~~~~~d~e 330 (666)
+..|..++. + .++.+|||+|||+|+++..|+.. +|+++|+++.++..|+.++....+ .. ..+...|..
T Consensus 85 ~s~Ii~~l~-i---~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~ 160 (264)
T d1i9ga_ 85 AAQIVHEGD-I---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 160 (264)
T ss_dssp HHHHHHHTT-C---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHHHHHhC-C---CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc
Confidence 445555554 2 45689999999999999888754 899999999999888765554322 22 244555677
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..++++++||.|++ +. +++..++.++.|+|||||.+++..+
T Consensus 161 ~~~~~~~~fDaV~l-----dl-p~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 161 DSELPDGSVDRAVL-----DM-LAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GCCCCTTCEEEEEE-----ES-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cccccCCCcceEEE-----ec-CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 78888999999984 44 7888999999999999999988764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=4.1e-11 Score=118.27 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcc-cCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc-cccccccC
Q 005981 501 WNEIIESYVRALH-WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWC 573 (666)
Q Consensus 501 w~~~v~~Y~~~l~-~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl-ig~~~~~c 573 (666)
+...+..+.+++. ........|||+|||+|.++..|+++|+ +|+.+| +++|+..|.++ |+ +.+...-.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-----~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~ 97 (251)
T d1wzna1 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV 97 (251)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-----EEEEEeeccccccccccccccccccchheehhh
Confidence 3334444434332 2333445799999999999999999987 677787 46899888766 44 44554445
Q ss_pred CCCCCCCCccceEEec-cccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 574 EPFDTYPRTYDLLHAA-GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 574 e~~~~yp~tyDliha~-~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|.++ ++++||+|.|. ++|.+.. ..+...+|.++.|+|||||+++|.
T Consensus 98 ~~l~-~~~~fD~I~~~~~~~~~~~-~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 98 LEIA-FKNEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GGCC-CCSCEEEEEECSSGGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcc-cccccchHhhhhhhhhcCC-hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5554 57899999986 5666653 346679999999999999999984
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=9.4e-11 Score=114.73 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=78.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e 330 (666)
.....+++.+. + +++.+|||||||+|.++..|++. .|+++|+++.++..++.+.. ..+..+ .+...+..
T Consensus 62 ~~~a~~l~~l~-l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~-~~~~~n~~~~~~d~~ 136 (213)
T d1dl5a1 62 SLMALFMEWVG-L---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE-RLGIENVIFVCGDGY 136 (213)
T ss_dssp HHHHHHHHHTT-C---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGG
T ss_pred hhhHHHHHhhh-c---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHh-hhcccccccccCchH
Confidence 34555666664 2 45689999999999988877643 69999999999888875544 445544 33444556
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
...+.+++||.|++..++.+. + .++.++|||||.+++.
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~-p------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 137 YGVPEFSPYDVIFVTVGVDEV-P------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GCCGGGCCEEEEEECSBBSCC-C------HHHHHHEEEEEEEEEE
T ss_pred HccccccchhhhhhhccHHHh-H------HHHHHhcCCCcEEEEE
Confidence 666667899999998776555 2 3567889999999885
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.08 E-value=2.1e-10 Score=111.69 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=76.5
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC--CCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp--f~d~sFDlVv~s~~l 348 (666)
..|||||||+|.++..++.. +++|+|+++.++..+.. .+.+.++.+ .+...++..+. ++++++|.|++...
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~-~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP- 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD-KVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHH-hhhhhccccceeeecCHHHHhhhccCCceehhccccc-
Confidence 57999999999988888764 89999999998887764 455556654 44455666654 67899999986543
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~--------~~~L~el~RvLkPGG~lv~st 376 (666)
..|.... ..+|.++.|+|||||.|.++|
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6663321 478999999999999999987
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.07 E-value=1.9e-10 Score=115.49 Aligned_cols=100 Identities=24% Similarity=0.334 Sum_probs=72.8
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
..++|||||||+|.++..++++ +++++|+ +.++..++...+ +.+... .+...+... +.+ ..||+|++.++
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~-~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHh-hcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 4578999999999999999875 7899997 556666554443 444433 233333222 333 56999999999
Q ss_pred ccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+|.++. ..+|++++++|||||.+++...
T Consensus 157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 99994322 3789999999999999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.07 E-value=7.4e-11 Score=115.27 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=70.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCC---CCeeEEEec
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS---QAFDLIHCS 345 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d---~sFDlVv~s 345 (666)
.++.+|||+|||+|..+.+|++. +|+|+|+|+.|+..++. .++.++. ......+....+... ..+|+|++.
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~-~a~~~~n-i~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLE-LVRERNN-IIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHH-HHHHCSS-EEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHH-HhhccCC-ceEEEeeccCccccccccceEEEEEec
Confidence 56689999999999888887753 79999999999988764 4555542 223333444433332 345665532
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+.|+ .+...+++++.++|||||++++..
T Consensus 133 --~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 133 --IAQK-NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp --CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ccCh-hhHHHHHHHHHHHhccCCeEEEEE
Confidence 3444 566789999999999999999874
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.07 E-value=6.7e-11 Score=117.06 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=84.8
Q ss_pred hHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc-cccccc
Q 005981 498 SKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHD 571 (666)
Q Consensus 498 ~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl-ig~~~~ 571 (666)
.+.|.+.+..+....+... ++|||+|||+|.++..|+++|. +|+.+| ++.||+.|.+| |+ +.++..
T Consensus 20 y~~~~~~~~~~~~~~~~~~---~~vLDiGCG~G~~~~~l~~~g~-----~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~ 91 (246)
T d1y8ca_ 20 YKKWSDFIIEKCVENNLVF---DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91 (246)
T ss_dssp HHHHHHHHHHHHHTTTCCT---TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCC---CeEEEEeCcCCHHHHHHHHhCC-----ccEeeccchhhhhhccccccccCccceeecc
Confidence 3456555555544433332 3599999999999999999987 677888 47899888775 44 555544
Q ss_pred cCCCCCCCCCccceEEec-cccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 572 WCEPFDTYPRTYDLLHAA-GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 572 ~ce~~~~yp~tyDliha~-~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
-.+.++ .+++||+|-|. ++|.+..+.-++..+|.+|.|.|+|||.|||.
T Consensus 92 d~~~~~-~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 92 DISNLN-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CGGGCC-CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred chhhhc-ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 433444 36899999985 67777766656778999999999999999973
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.04 E-value=5.2e-11 Score=116.76 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=87.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc--cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl--ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
+|||+|||+|.++..|+++|.+ |+.+| ++++++.+.+|.- +.+.+.-.|.+. .+.+||+|.|.++|.|..+
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~-----v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFND-----ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSC-----EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCSS
T ss_pred cEEEEeCCCcHHHHHHHHcCCe-----EEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecCC
Confidence 4999999999999999999874 44555 3578888877633 444555555554 3699999999999999875
Q ss_pred CCCHHHHHHHhh-hcccCCeEEEEEeCh---------------------------------hHHHHHHHHHHhcCcEEEE
Q 005981 598 RCNMSTIMLEMD-RMLRPGGHVYIRDSI---------------------------------DVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 598 ~c~~~~~l~E~d-RiLRPgG~~ii~d~~---------------------------------~~~~~~~~i~~~l~W~~~~ 643 (666)
. ..+|.|+. |+|||||+++|.-.. -..+.++.+++....++..
T Consensus 97 ~---~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 97 P---VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp H---HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred H---HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 4 78899995 999999999996210 0156788889998888654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.8e-10 Score=115.29 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=79.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~ 331 (666)
.|.+.|.+.... .++++|||||||+|.++..++++ +|+++|.++.+.. ++ +.+.+.+.. ..+...++++
T Consensus 22 ~y~~ai~~~~~~----~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~~~~~~ 95 (311)
T d2fyta1 22 SYRDFIYQNPHI----FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIKGKIEE 95 (311)
T ss_dssp HHHHHHHHCGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhcccc----CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEEeeHHH
Confidence 466666555432 24579999999999998888765 7999999997653 33 233444433 3455567888
Q ss_pred CCCCCCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~ 374 (666)
++++.++||+|+|....++...+ ...++....++|||||.++-
T Consensus 96 l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 96 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 98888999999986554444332 34777778999999999864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.02 E-value=1.4e-10 Score=113.27 Aligned_cols=96 Identities=8% Similarity=0.106 Sum_probs=78.6
Q ss_pred eEeeccccchHHHHHHhhC----CCceEEEEeeccC-CCCChhHHHhc----cccccccccCCCCCCCC-CccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~-~~~~l~~~~er----Glig~~~~~ce~~~~yp-~tyDliha~~ 590 (666)
.|||+|||+|..+.+|++. ++ +|+.+| ++.|++.|.++ +....++-.+..+..+| ..+|++.|..
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~-----~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNV-----KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSC-----EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred EEEEeccchhhHHHHHHHhhcCCCC-----ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 5999999999999998863 54 788888 47999999875 55556666666677777 8999999998
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++.+.. .-+...+|.||.|.|||||.+|+.|
T Consensus 117 ~l~~~~-~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 117 TLQFLP-PEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp CGGGSC-GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccccC-hhhHHHHHHHHHHhCCCCceeeccc
Confidence 887754 3366799999999999999999985
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.99 E-value=1.1e-10 Score=109.73 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=89.6
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc------------------
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------------------ 565 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl------------------ 565 (666)
+..|+..+.+..+. .|||+|||+|..+.+|+++|++ |+.+| +++++..+.+|.=
T Consensus 9 ~~~~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~~-----V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T d1pjza_ 9 LQQYWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYH-----VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81 (201)
T ss_dssp HHHHHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCE-----EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred HHHHHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCCc-----eEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence 34567777776664 4999999999999999999994 55555 4578888887621
Q ss_pred cccccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh------------hHHHHHHH
Q 005981 566 IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQE 632 (666)
Q Consensus 566 ig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~------------~~~~~~~~ 632 (666)
+-.+..-......++ .+||+|.+..++.+... .+...++.+|.|.|||||.+++.... -..+.+++
T Consensus 82 ~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~ 160 (201)
T d1pjza_ 82 IEIWCGDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHR 160 (201)
T ss_dssp SEEEEECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHH
T ss_pred cceecccccccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHH
Confidence 112222222222233 78999999999887764 24468999999999999998885211 01345666
Q ss_pred HHHhcCcEEEEEe
Q 005981 633 IGKAMGWHVTLRE 645 (666)
Q Consensus 633 i~~~l~W~~~~~~ 645 (666)
++. -.|++....
T Consensus 161 l~~-~~~~i~~~~ 172 (201)
T d1pjza_ 161 VMS-GNWEVTKVG 172 (201)
T ss_dssp TSC-SSEEEEEEE
T ss_pred HhC-CCcEEEEEE
Confidence 653 467765443
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=7.4e-10 Score=114.31 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=73.6
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+++|||||||+|.++..+++. +|+|+|.++.+ ..+. +.++..+... .+...+...++++.++||+|++..+.+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~-~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhh-hHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 478999999999988887764 79999999754 3333 4455555543 444557888998889999999865544
Q ss_pred ccc--cChHHHHHHHHHhccCCeEEEE
Q 005981 350 NWT--RDDGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 350 h~~--~d~~~~L~el~RvLkPGG~lv~ 374 (666)
... .....++..+.|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 332 2356899999999999999863
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.1e-10 Score=119.43 Aligned_cols=116 Identities=11% Similarity=-0.011 Sum_probs=82.3
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHH------cC---C
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE------RG---A 320 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~------rg---~ 320 (666)
.....++++++.+.. .+..+|||||||+|.++..++.. +++|+|+++.++..|+.+.... .| .
T Consensus 135 ~~~~~~~~~~~~~~l----~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~ 210 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIKM----TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210 (328)
T ss_dssp CCHHHHHHHHHHSCC----CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHcCC----CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 334556677777652 45579999999999888777542 7999999999887776443321 12 2
Q ss_pred CceEEeecccCCCCCCCCe--eEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 321 PAMVAAFATRRLPYPSQAF--DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 321 ~~~~~~~d~e~Lpf~d~sF--DlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
...+...|+..+++.+..| |+|++++ +.++ ++....|.++.|+|||||.++..
T Consensus 211 ~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~-~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 211 EYTLERGDFLSEEWRERIANTSVIFVNN-FAFG-PEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CEEEEECCTTSHHHHHHHHHCSEEEECC-TTTC-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ceEEEECcccccccccccCcceEEEEcc-eecc-hHHHHHHHHHHHhCCCCcEEEEe
Confidence 3345666777777765555 6677544 4555 67789999999999999999765
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=8.3e-10 Score=114.44 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=79.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~ 331 (666)
.|.+.|.+.... .++.+|||||||+|.++..++++ +|+++|.++ ++..++ +.++..+... .+...+.+.
T Consensus 25 ~y~~aI~~~~~~----~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~-~~~~~~~~~~~i~~i~~~~~~ 98 (328)
T d1g6q1_ 25 SYRNAIIQNKDL----FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHH----HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhcccc----CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHH-HHHHHhCccccceEEEeehhh
Confidence 345555443332 23479999999999998888765 799999997 554444 4445555433 445557888
Q ss_pred CCCCCCCeeEEEecccccccc--cChHHHHHHHHHhccCCeEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWT--RDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~--~d~~~~L~el~RvLkPGG~lv 373 (666)
+++++++||+|++..+..+.. .....++.++.|+|||||.++
T Consensus 99 l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 999999999999865544433 345688999999999999985
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=1.5e-09 Score=109.71 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=78.1
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceE--EeecccC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRR 331 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~--~~~d~e~ 331 (666)
+..|...+. + .++.+|||+|||+|.++..|+.. +|+++|+++.++..|+.+. ...++...+ ...|. .
T Consensus 92 ~~~Ii~~l~-i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~-~~~g~~~~v~~~~~d~-~ 165 (266)
T d1o54a_ 92 SSFIAMMLD-V---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL-TKWGLIERVTIKVRDI-S 165 (266)
T ss_dssp HHHHHHHTT-C---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHH-HHTTCGGGEEEECCCG-G
T ss_pred HHHHHHhhC-C---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-HHhccccCcEEEeccc-c
Confidence 344555554 2 45689999999999988888642 7999999999998887554 444543322 22232 2
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+....||.|+ ++. +++..++.++.++|||||.+++..+
T Consensus 166 ~~~~~~~~D~V~-----~d~-p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 166 EGFDEKDVDALF-----LDV-PDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp GCCSCCSEEEEE-----ECC-SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccccccceeeeE-----ecC-CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 235678899987 344 7888999999999999999998764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.95 E-value=9.1e-10 Score=110.33 Aligned_cols=98 Identities=9% Similarity=0.141 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
+++.+|||+|||+|.++..|+.. +|+++|+++.++..|+.++.+..+... .+...|..+. +++++||.|++.
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld- 161 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD- 161 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC-
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec-
Confidence 46689999999999988888753 799999999988888765554333333 3444455444 567899999853
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. +++..++.++.++|||||.+++..+
T Consensus 162 ----~-p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 162 ----I-PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp ----C-SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ----C-CchHHHHHHHHHhcCCCceEEEEeC
Confidence 2 6777899999999999999998864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.3e-09 Score=107.43 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=77.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHc----CC-CceEEee
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER----GA-PAMVAAF 327 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~r----g~-~~~~~~~ 327 (666)
....+++.|... -.++.+|||||||+|.++..|++. +|+++|+++.++..++..+.+.. +. ...+...
T Consensus 62 ~~a~~le~L~~~--l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g 139 (224)
T d1i1na_ 62 MHAYALELLFDQ--LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG 139 (224)
T ss_dssp HHHHHHHHTTTT--SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred HHHHHHHHHhhc--cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence 445666665321 145689999999999887766642 89999999999988876554322 11 2234445
Q ss_pred cccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 328 ATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 328 d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|......+++.||.|++.....+. + .++.+.|||||.+++..
T Consensus 140 D~~~~~~~~~~fD~I~~~~~~~~i-p------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 140 DGRMGYAEEAPYDAIHVGAAAPVV-P------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSSC-C------HHHHHTEEEEEEEEEEE
T ss_pred ecccccchhhhhhhhhhhcchhhc-C------HHHHhhcCCCcEEEEEE
Confidence 666666677899999988775554 2 35789999999999863
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.94 E-value=2.9e-10 Score=108.99 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=69.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHH----hccc--cccc-cccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL--IGVM-HDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~----erGl--ig~~-~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||+|||.|..+.+|+++|+ .|+.+| ++.+++.+. +.|+ +.+. .|.++ + .++.+||+|.|..+|
T Consensus 33 rvLDiGcG~G~~~~~la~~g~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY-----DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT-L-TFDGEYDFILSTVVM 105 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT-C-CCCCCEEEEEEESCG
T ss_pred cEEEECCCCCHHHHHHHHHhh-----hhccccCcHHHHHHHHHHhhhccccchhhhheeccc-c-cccccccEEEEeeee
Confidence 499999999999999999998 455566 356676554 3454 2222 22221 1 246999999999999
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+..+ -....+|.++.|+|||||++++.
T Consensus 106 ~~~~~-~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 106 MFLEA-QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GGSCT-THHHHHHHHHHHTEEEEEEEEEE
T ss_pred ecCCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 88754 35678999999999999999996
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.93 E-value=5.9e-10 Score=113.13 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=74.0
Q ss_pred ceeeEeeccccchHHHHHHhhC---CCceEEEEeeccC-CCCChhHHHhc----cc-cccccccCCCCCCCCCccceEEe
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHA 588 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~-~~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDliha 588 (666)
+-..|||+|||+|.++..|++. +. +|+.+| ++.+++.|.++ |+ +-..+...+.++ ++.+||+|+|
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~-----~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~~~fD~v~~ 100 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGS-----KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAIC 100 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTC-----EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEE
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCC-----EEEEEecchhHhhhhhccccccccccccccccccccc-ccCCceEEEE
Confidence 4467999999999999999874 44 466666 36778777655 43 334444444444 4689999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.++|.|..+. ..+|.+|.|+|||||++++.|.
T Consensus 101 ~~~l~~~~d~---~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 101 HAFLLHMTTP---ETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp ESCGGGCSSH---HHHHHHHHHTEEEEEEEEEEEC
T ss_pred ehhhhcCCCH---HHHHHHHHHHcCcCcEEEEEEC
Confidence 9999987754 7899999999999999999753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=9e-10 Score=108.78 Aligned_cols=149 Identities=10% Similarity=0.073 Sum_probs=95.6
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----c-c-------------c---
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-I-------------G--- 567 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG----l-i-------------g--- 567 (666)
+.+.....+=..|||+|||.|.++..+++.+. -+|+.+| ++++++.+.++- . + |
T Consensus 43 ~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~----~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (257)
T d2a14a1 43 KTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF----QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 118 (257)
T ss_dssp HHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE----EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHhcccCCCCCEEEEECCCCCHhHHHHhcccc----CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccc
Confidence 33433333345699999999999988887753 2577777 467787776541 1 0 0
Q ss_pred ----------------cccccCCC--CCCCC-CccceEEeccccccCCC-CCCHHHHHHHhhhcccCCeEEEEEeChh--
Q 005981 568 ----------------VMHDWCEP--FDTYP-RTYDLLHAAGLFSVESK-RCNMSTIMLEMDRMLRPGGHVYIRDSID-- 625 (666)
Q Consensus 568 ----------------~~~~~ce~--~~~yp-~tyDliha~~~f~~~~~-~c~~~~~l~E~dRiLRPgG~~ii~d~~~-- 625 (666)
...+-++. ...++ .+||+|.+..++.+... +-++..++.+|.|+|||||++|+.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~ 198 (257)
T d2a14a1 119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP 198 (257)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred hHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence 00111111 22333 89999999988877542 3345689999999999999999975321
Q ss_pred --------------HHHHHHHHHHhcCcEEEEEeccC----C---CCCceEEEEEEeC
Q 005981 626 --------------VMDELQEIGKAMGWHVTLRETAE----G---PHASYRILTADKR 662 (666)
Q Consensus 626 --------------~~~~~~~i~~~l~W~~~~~~~~~----~---~~~~e~~l~~~k~ 662 (666)
..+.|+++++.-.+++...+... . ...+.-+++++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 199 SYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred cceeccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 26888999999999764432111 1 1233456668875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=7.6e-10 Score=111.17 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=87.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHh----ccc-cccccccCCCCCCCC-CccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~e----rGl-ig~~~~~ce~~~~yp-~tyDliha~~~f~ 593 (666)
.|||+|||+|.++.++++.|.. |+.+| ++.+++.+.+ .|+ +-+.+...+ ...| .+||+|.|+.+..
T Consensus 123 ~VLDiGcGsG~l~i~aa~~g~~-----V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~--~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 123 KVLDLGTGSGVLAIAAEKLGGK-----ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE--AALPFGPFDLLVANLYAE 195 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTCE-----EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH--HHGGGCCEEEEEEECCHH
T ss_pred EEEEcccchhHHHHHHHhcCCE-----EEEEECChHHHHHHHHHHHHcCCceeEEecccc--ccccccccchhhhccccc
Confidence 5999999999999999999874 45555 3566666654 455 223332211 1234 7999999973332
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
.+..++.++.|+|||||++|+++- .+..+.+.+.+++..|+......++ ....|+.+|
T Consensus 196 ------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~----~Wv~l~~~r 254 (254)
T d2nxca1 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEG----EWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET----TEEEEEEEC
T ss_pred ------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEEC----CEEEEEEeC
Confidence 245788999999999999999874 3456788889999999987665543 366777665
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.91 E-value=2.4e-10 Score=113.78 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=73.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-------cccccccCCCCCCC-CCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-------IGVMHDWCEPFDTY-PRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-------ig~~~~~ce~~~~y-p~tyDliha~~~ 591 (666)
+|||+|||+|+....+++.|.. +|+.+| ++.+++.|.+|.. +..++.-+...+.. ..+||+|.|..+
T Consensus 27 ~VLDlGCG~G~~~~~~~~~~~~----~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 27 SVLDLGCGKGGDLLKYERAGIG----EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp EEEEETCTTTTTHHHHHHHTCS----EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred EEEEecccCcHHHHHHHHcCCC----eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 5999999999999999987642 677787 4789999987632 33334334333322 379999999988
Q ss_pred cccCC-CCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVES-KRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~-~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.+.- ..-++..+|.+|.|+|||||+||++
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 87753 3334568999999999999999997
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.89 E-value=1.1e-09 Score=108.32 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=78.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeec---c
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---T 329 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d---~ 329 (666)
....|+.-+..+ .-.++.+|||+|||+|.++.+|++. .|+|+|+++.++..+.. .++.++....+ ..+ .
T Consensus 58 laa~i~~~l~~l-~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~-~a~~~~~~~~i-~~d~~~~ 134 (227)
T d1g8aa_ 58 LGAAIMNGLKNF-PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP-IVEERRNIVPI-LGDATKP 134 (227)
T ss_dssp HHHHHHTTCCCC-CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHSSCTTEEEE-ECCTTCG
T ss_pred HHHHHHcccccc-ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH-HHHhcCCceEE-EEECCCc
Confidence 344555555432 2256789999999999999998863 79999999999987753 44444322222 222 2
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+..+.....+|+|++. +.|. ++...++.++.+.|||||+++++.
T Consensus 135 ~~~~~~~~~vD~i~~d--~~~~-~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 135 EEYRALVPKVDVIFED--VAQP-TQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GGGTTTCCCEEEEEEC--CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccceEEEEEE--cccc-chHHHHHHHHHHhcccCCeEEEEE
Confidence 3334455789999853 2333 556789999999999999999874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.4e-09 Score=104.92 Aligned_cols=127 Identities=12% Similarity=-0.013 Sum_probs=86.7
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-----------------------
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----------------------- 565 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl----------------------- 565 (666)
+.+++..+. .|||+|||.|..+.+|+++|+ +|+.+| ++.+++.+.++.-
T Consensus 39 ~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~-----~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 39 TFLKGKSGL--RVFFPLCGKAVEMKWFADRGH-----SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHTTCCSC--EEEETTCTTCTHHHHHHHTTC-----EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HhcCCCCCC--EEEEeCCCCcHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 444544442 499999999999999999998 677777 3567776665421
Q ss_pred cccc-cccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe----Ch--------hHHHHHHH
Q 005981 566 IGVM-HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD----SI--------DVMDELQE 632 (666)
Q Consensus 566 ig~~-~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d----~~--------~~~~~~~~ 632 (666)
+..+ .|..+--+....+||+|+..++|.+... -..+.++.+|.|+|||||++++.. .. -..++|++
T Consensus 112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~ 190 (229)
T d2bzga1 112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIER 190 (229)
T ss_dssp EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHH
T ss_pred EEEEEcchhhccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHH
Confidence 1111 1111111233489999999999988753 345799999999999999988751 11 13567888
Q ss_pred HHHhcCcEEEEEe
Q 005981 633 IGKAMGWHVTLRE 645 (666)
Q Consensus 633 i~~~l~W~~~~~~ 645 (666)
++.. .|++...+
T Consensus 191 lf~~-~~~i~~le 202 (229)
T d2bzga1 191 LFGK-ICNIRCLE 202 (229)
T ss_dssp HHTT-TEEEEEEE
T ss_pred HhcC-CCEEEEEE
Confidence 8876 57775443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=7e-10 Score=111.84 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=70.7
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
+-..|||+|||.|.+..+|++.+.++ +++.+| ++.+++.+.+++- +.....-.+.++.-+.+||+|++..++.+
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~- 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK- 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH-
Confidence 34569999999999999999884322 455666 4688999988764 55566666776644599999998754432
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.|+.|+|||||++++..
T Consensus 160 ---------~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 160 ---------AEELARVVKPGGWVITAT 177 (268)
T ss_dssp ---------HHHHHHHEEEEEEEEEEE
T ss_pred ---------HHHHHHHhCCCcEEEEEe
Confidence 679999999999999974
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.87 E-value=2.3e-09 Score=106.88 Aligned_cols=140 Identities=23% Similarity=0.321 Sum_probs=92.1
Q ss_pred CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHH----Hhccc---cccc-cccCCCCCCCCCccceE
Q 005981 515 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI----YDRGL---IGVM-HDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 515 ~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~----~erGl---ig~~-~~~ce~~~~yp~tyDli 586 (666)
.....+.|||+|||.|.++.+|+++.-++- ++-+|.+.+++.+ .+.|+ +... +|. |...|..||+|
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~v 150 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVS---ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAI 150 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEE
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeE---EEEccCHHHHHHHHHHHHHhhcccchhhccccc---hhhcccchhhe
Confidence 456778999999999999999998721222 2223333455444 34565 3333 333 44456889999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh--------------h------------HHHHHHHHHHhcCcE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------D------------VMDELQEIGKAMGWH 640 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~--------------~------------~~~~~~~i~~~l~W~ 640 (666)
.+..++.++.+. +...+|.++.|.|||||.++|.|.. + ..+++++++++-.++
T Consensus 151 ~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~ 229 (253)
T d1tw3a2 151 ILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 229 (253)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred eeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCe
Confidence 999999887653 3358899999999999999997531 0 135677788888998
Q ss_pred EEEEeccCCCCCc-eEEEEEEe
Q 005981 641 VTLRETAEGPHAS-YRILTADK 661 (666)
Q Consensus 641 ~~~~~~~~~~~~~-e~~l~~~k 661 (666)
+.....-..+..+ ...|++.|
T Consensus 230 ~~~v~~~~~p~~~~~~~li~~~ 251 (253)
T d1tw3a2 230 VEEVRQLPSPTIPYDLSLLVLA 251 (253)
T ss_dssp EEEEEEEECSSSSCEEEEEEEE
T ss_pred EEEEEECCCCCCCccEEEEEEe
Confidence 6543322334333 33444444
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.86 E-value=1.5e-09 Score=103.93 Aligned_cols=129 Identities=18% Similarity=0.290 Sum_probs=87.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccCCCCCCC-CCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWCEPFDTY-PRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~ce~~~~y-p~tyDliha~ 589 (666)
.+|||+|||+|.++.+|++.+. +|+.+|. +.++..+.++ |+ +.+.+..+ +... +.+||+|.|+
T Consensus 54 ~~VLDiGcG~G~~~~~la~~~~-----~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--~~~~~~~~fD~Ii~~ 126 (194)
T d1dusa_ 54 DDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--YENVKDRKYNKIITN 126 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--TTTCTTSCEEEEEEC
T ss_pred CeEEEEeecCChhHHHHHhhcc-----ccceeeeccccchhHHHHHHHhCCccceEEEEEcch--hhhhccCCceEEEEc
Confidence 4699999999999999999876 5555663 5666666542 44 33333222 3222 4899999998
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
..|.+..+ .++.++.++.|+|+|||.++|. ......+.+...++++-+++...... ...+||-++|
T Consensus 127 ~p~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 127 PPIRAGKE--VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp CCSTTCHH--HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred ccEEecch--hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 77754332 2367899999999999998875 33334456666666666665544332 2478898887
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.76 E-value=9.7e-09 Score=101.07 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=71.4
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS 336 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d 336 (666)
...+++.+. + .++.+|||||||+|.++..|+.. +|+++|+++..+..++.... ......+...|......+.
T Consensus 59 ~a~ml~~L~-l---~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~~~ 132 (224)
T d1vbfa_ 59 GIFMLDELD-L---HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYEEE 132 (224)
T ss_dssp HHHHHHHTT-C---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCGGG
T ss_pred HHHHHHHhh-h---cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHh--cccccccccCchhhcchhh
Confidence 344556554 2 45689999999999999888765 89999999988877754332 2223334444433322345
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.||.|++..+..+. + ..+.+.|||||.+++-
T Consensus 133 ~pfD~Iiv~~a~~~i-p------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 133 KPYDRVVVWATAPTL-L------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp CCEEEEEESSBBSSC-C------HHHHHTEEEEEEEEEE
T ss_pred hhHHHHHhhcchhhh-h------HHHHHhcCCCCEEEEE
Confidence 789999987775544 2 3456889999999885
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.6e-08 Score=104.66 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHc---------CC--CceEEeecccCCC--C
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER---------GA--PAMVAAFATRRLP--Y 334 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~r---------g~--~~~~~~~d~e~Lp--f 334 (666)
.++.+|||+|||+|.++..|+.. +|+++|+++.++..|+.++.... +. ...+...|+.... +
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 45689999999999999888753 79999999999988876655421 11 1223334444443 4
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++..||.|+. ++ +++..++.++.++|||||.|++..+
T Consensus 177 ~~~~fD~V~L-----D~-p~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 177 KSLTFDAVAL-----DM-LNPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp ----EEEEEE-----CS-SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCcceEee-----cC-cCHHHHHHHHHHhccCCCEEEEEeC
Confidence 5678999984 33 5666789999999999999998754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=2.4e-09 Score=108.70 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=69.2
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----ccccc-----c--cccCC--CCCCCCCccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGV-----M--HDWCE--PFDTYPRTYD 584 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Glig~-----~--~~~ce--~~~~yp~tyD 584 (666)
.++|||+|||+|.++..|+++|+ +|+.+| ++.||..|.++ +.-.. . -+|.. .-..+..+||
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~-----~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC-----eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 35799999999999999999997 677787 46888887664 32111 1 11110 0011347999
Q ss_pred eEEec-cccccCCC----CCCHHHHHHHhhhcccCCeEEEEE
Q 005981 585 LLHAA-GLFSVESK----RCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 585 liha~-~~f~~~~~----~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|.|. .+|.|..+ .-++..+|.||.|+|||||.|||.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 99975 46777543 223567999999999999999995
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=7.2e-09 Score=110.36 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc------CCC---
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER------GAP--- 321 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r------g~~--- 321 (666)
.-..+.++++.+.- +++.++||||||+|.++..++.. +|+|+|+++.++..|+.+..... +..
T Consensus 201 ~~~~i~~Il~~l~L----kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~ 276 (406)
T d1u2za_ 201 LPNFLSDVYQQCQL----KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276 (406)
T ss_dssp CHHHHHHHHHHTTC----CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred CHHHHHHHHHHhCC----CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 33456667776652 45689999999999988887753 79999999999888775443211 111
Q ss_pred ceE-EeecccCCCCC---CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 322 AMV-AAFATRRLPYP---SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 322 ~~~-~~~d~e~Lpf~---d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
..+ ...+....++. -..+|+|++++ .++. ++....|.++.|+|||||.++.+
T Consensus 277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~-~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 277 VEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFD-EDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCC-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ceeeeeechhhccccccccccceEEEEec-ccCc-hHHHHHHHHHHHhcCCCcEEEEe
Confidence 111 11111111111 13568888654 3444 77789999999999999999775
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.4e-09 Score=106.34 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=83.3
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----c-cc--------------------------
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----G-LI-------------------------- 566 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----G-li-------------------------- 566 (666)
=+.|||+|||.|.+...++.+. +.+|+.+| ++++++.+.++ + .+
T Consensus 55 g~~vLDiGcG~g~~~~~~~~~~----~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 55 GRTLIDIGSGPTVYQLLSACSH----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSEEEEETCTTCCGGGTTGGGG----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CcEEEEeccCCCHHHHHHhccc----CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 3469999999998877666552 23788888 57888877542 0 01
Q ss_pred -----ccc-cccCCC--C---CCCCCccceEEeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEEeChh---------
Q 005981 567 -----GVM-HDWCEP--F---DTYPRTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSID--------- 625 (666)
Q Consensus 567 -----g~~-~~~ce~--~---~~yp~tyDliha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~--------- 625 (666)
.+. +|-.+. + ...+..||+|.+..++++. .++.++..+|.++.|+|||||++|+.+...
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 001 111111 1 1223689999999888765 455678899999999999999999974311
Q ss_pred -------HHHHHHHHHHhcCcEEEE
Q 005981 626 -------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 626 -------~~~~~~~i~~~l~W~~~~ 643 (666)
..+.|++++..-..++..
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEEE
Confidence 258899999998887643
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.69 E-value=4.4e-09 Score=105.30 Aligned_cols=127 Identities=24% Similarity=0.304 Sum_probs=86.4
Q ss_pred CCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccc---cccccccCCCCCCCCCccceEEec
Q 005981 515 KKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 515 ~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
+...++.|||+|||.|.++++|+++ +..+.++.+ |-......+.+.+.|+ +.+...- .+...|..||+|.+.
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d--~~~~~p~~~D~v~~~ 154 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGD--FFKPLPVTADVVLLS 154 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC--TTSCCSCCEEEEEEE
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee--ccccccccchhhhcc
Confidence 4567789999999999999999987 443344332 2111222334445566 3333222 244567789999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh---------------------------HHHHHHHHHHhcCcEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID---------------------------VMDELQEIGKAMGWHVT 642 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~---------------------------~~~~~~~i~~~l~W~~~ 642 (666)
.+|.++.+. ....+|.++.|+|||||.++|.|... ..++++++++.-.++..
T Consensus 155 ~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~ 233 (256)
T d1qzza2 155 FVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA 233 (256)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEE
T ss_pred ccccccCcH-HHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCcee
Confidence 999887642 23588999999999999999976421 13567788888888775
Q ss_pred EEe
Q 005981 643 LRE 645 (666)
Q Consensus 643 ~~~ 645 (666)
...
T Consensus 234 ~~~ 236 (256)
T d1qzza2 234 SER 236 (256)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=3.2e-08 Score=99.31 Aligned_cols=120 Identities=13% Similarity=0.222 Sum_probs=80.6
Q ss_pred eEeeccccchHHHHHHhhC----CCceEEEEeeccC-CCCChhHHHhc-----cccccccccCCC---------CCCC-C
Q 005981 521 NVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVS-GFNTLPVIYDR-----GLIGVMHDWCEP---------FDTY-P 580 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~-~~~~l~~~~er-----Glig~~~~~ce~---------~~~y-p 580 (666)
+|||+|||.|.++..|++. ... ....++.+| ++.+++.+.+| .+-.+-.+|... .... +
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~-~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPG-VCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTT-CEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccC-CceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 5999999999998777553 111 234667777 46888888775 121111122110 1122 3
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC--hh----------------------HHHHHHHHHHh
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS--ID----------------------VMDELQEIGKA 636 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~--~~----------------------~~~~~~~i~~~ 636 (666)
.+||+|+|.++|.+..+ +..+|.+|.|+|||||+++|... .. ....++.++++
T Consensus 122 ~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 198 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 198 (280)
T ss_dssp CCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHH
T ss_pred CceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHH
Confidence 89999999999988764 58999999999999999988621 10 13457778888
Q ss_pred cCcEEEEE
Q 005981 637 MGWHVTLR 644 (666)
Q Consensus 637 l~W~~~~~ 644 (666)
+.|+....
T Consensus 199 ~G~~~~~~ 206 (280)
T d1jqea_ 199 LGLKYECY 206 (280)
T ss_dssp HTCCEEEE
T ss_pred CCCceEEE
Confidence 88875443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=7.6e-08 Score=97.30 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~ 329 (666)
....++..+..+. ....+|||+|||+|..+..++.. +|+++|+|+..+..|+. .+...++.. .+...|.
T Consensus 94 TE~lv~~~l~~~~-----~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~-Na~~~~~~~v~~~~~d~ 167 (274)
T d2b3ta1 94 TECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSDW 167 (274)
T ss_dssp HHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCST
T ss_pred hhhhhhhHhhhhc-----ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHH-HHHHhCcccceeeeccc
Confidence 3445555555444 34468999999999888777643 89999999999988874 555566643 3444442
Q ss_pred cCCCCCCCCeeEEEecccccccc------------c------------ChHHHHHHHHHhccCCeEEEEE
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWT------------R------------DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~------------~------------d~~~~L~el~RvLkPGG~lv~s 375 (666)
.. ++++++||+|+|+--.+.-. + ....++.++.+.|+|||.+++-
T Consensus 168 ~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 168 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 34567999999975443210 0 0125788899999999999986
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.61 E-value=1.8e-08 Score=95.72 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=85.7
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCCCCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPFDTYPR 581 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~~~yp~ 581 (666)
..+++..+.. |||+|||+|.++.+|+..+. .|+.+|. +++++.+.+ .|+ +-+.+...+....-..
T Consensus 27 ~~l~~~~g~~--VLDiGcGsG~~s~~lA~~~~-----~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 27 CLAEPGKNDV--AVDVGCGTGGVTLELAGRVR-----RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHCCCTTCE--EEEESCTTSHHHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HhcCCCCCCE--EEEEECCeEcccccccccce-----EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 4456666664 99999999999999998865 4555663 566766655 355 4455554433332237
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEE
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~ 642 (666)
.||+|.+.+.- -.+++++.++.+.|||||++++... .+....+.+.++...|+..
T Consensus 100 ~~D~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 100 DIDIAVVGGSG------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp CEEEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred CcCEEEEeCcc------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 99999987422 2467999999999999999999864 4566777788888777544
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=4.9e-09 Score=102.91 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=66.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc------cccccccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl------ig~~~~~ce~~~~yp-~tyDliha~~~ 591 (666)
.+|||+|||+|.++.+|++.+. -+|+.+| ++.+++.+.++.- ....+++.+-...+| .+||+|-.+.+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~----~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI----DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE----EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEeeccchHHHHHHHHcCC----CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4699999999999999998742 2555565 3578888876643 122334433334455 78888875433
Q ss_pred ccc--CCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSV--ESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~--~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+. ..+.-+.+.++.|+.|+|||||.|++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 322 222334568999999999999999984
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.61 E-value=5e-08 Score=94.78 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=86.1
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHH----HhccccccccccCCCCCCCCCccce
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVI----YDRGLIGVMHDWCEPFDTYPRTYDL 585 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~----~erGlig~~~~~ce~~~~yp~tyDl 585 (666)
++++.|.- |||+|||.|++..+|++. +- . -|..+| ++.+++.+ ..++.+...+.-++....|+..+|.
T Consensus 52 l~lkpg~~--VLDlGcG~G~~~~~la~~v~~-g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 52 LKLRGDER--VLYLGAASGTTVSHLADIVDE-G---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CCCCSSCE--EEEETCTTSHHHHHHHHHTTT-S---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCCCE--EEEeCCcCCHHHHHHHHhccC-C---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccce
Confidence 45666654 999999999999999875 21 0 255565 34555444 4456666666655555566666655
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC----------hhHHHHHHHHHHhcCcEEEE-EeccCCCCCce
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTL-RETAEGPHASY 654 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~----------~~~~~~~~~i~~~l~W~~~~-~~~~~~~~~~e 654 (666)
+.+. |...........+|.|+.|+|||||+++|.+. ..+...+.+.++. .+++.- .+. .|..++
T Consensus 126 vd~v--~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~-gf~i~E~i~L--~P~~~~ 200 (209)
T d1nt2a_ 126 VDLI--YQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEG-DFKIVKHGSL--MPYHRD 200 (209)
T ss_dssp EEEE--EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEEEC--TTTCTT
T ss_pred EEEE--EecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcc--CCCccC
Confidence 4432 22222233456899999999999999999742 2233333333332 455432 222 366667
Q ss_pred EEEEEEeCC
Q 005981 655 RILTADKRL 663 (666)
Q Consensus 655 ~~l~~~k~~ 663 (666)
-+||.-++|
T Consensus 201 H~~v~~~r~ 209 (209)
T d1nt2a_ 201 HIFIHAYRF 209 (209)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEEEeC
Confidence 788887765
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=4.2e-08 Score=101.33 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=72.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCCh----hHHHhccc---cccccccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTL----PVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l----~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|||+|||+|.++..+++.|+. .|+.++...++ +.+.++|+ +-+++...+.+..-+..||+|.+..++.
T Consensus 41 ~VLDlGcGtG~ls~~aa~~Ga~----~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 41 IVLDVGCGTGILSMFAAKHGAK----HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCCS----EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred EEEEeCCCCCHHHHHHHHhCCC----EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 4999999999999999999863 24444543343 44455676 5566666666553348999999987777
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
.....-.++.++.+++|+|||||.+|-
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccchhHHHHHHHHHhccCCCeEEEe
Confidence 766666778999999999999999863
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.57 E-value=1.3e-07 Score=97.58 Aligned_cols=131 Identities=13% Similarity=0.051 Sum_probs=84.1
Q ss_pred ccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--e
Q 005981 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--M 323 (666)
Q Consensus 249 t~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~ 323 (666)
+.|....+.....+.+.+. ++.+|||+|||+|.++..++.. +|+++|+++..+..++. .+...|+.. .
T Consensus 126 tG~flDqr~~r~~~~~~~~------~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~-N~~~ngl~~~~~ 198 (324)
T d2as0a2 126 TGFFLDQRENRLALEKWVQ------PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMK 198 (324)
T ss_dssp SCCCSTTHHHHHHHGGGCC------TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEE
T ss_pred cCcccchhhHHHHHHhhcC------CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHH-HHHHcCCCccce
Confidence 3333344444445544442 3479999999999999888754 79999999999888774 455566643 3
Q ss_pred EEeeccc----CCCCCCCCeeEEEeccccccccc--------ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHH
Q 005981 324 VAAFATR----RLPYPSQAFDLIHCSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQ 386 (666)
Q Consensus 324 ~~~~d~e----~Lpf~d~sFDlVv~s~~l~h~~~--------d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el 386 (666)
+...|+. .++....+||+|++..-...-.. +...++..+.++|+|||.+++++....-+.+++
T Consensus 199 ~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f 273 (324)
T d2as0a2 199 FIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMF 273 (324)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHH
T ss_pred eeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHH
Confidence 3334422 23345678999997533221111 123578888999999999999874333343433
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=5.4e-08 Score=99.60 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=71.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCC---hhHHHhccc---cccccccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNT---LPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~---l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|||+|||+|.++..+++.|+. .|+.+|. +.+ ...+.+.|+ |-+.+...+.+..-+..||+|.+..+..
T Consensus 38 ~VLDiGcG~G~lsl~aa~~Ga~----~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 38 VVLDVGCGTGILSMFAAKAGAK----KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp EEEEETCTTSHHHHHHHHTTCS----EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred EEEEECCCCCHHHHHHHHcCCC----EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 4999999999999999999853 3444443 222 345556666 6666777666654458999999986666
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
.....-.++.++..++|+|||||.+|-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 655544567888889999999999985
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=3.2e-08 Score=95.88 Aligned_cols=118 Identities=12% Similarity=0.150 Sum_probs=80.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCCh----hHHHhccc--cccccccCCCCC-CCC-CccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTL----PVIYDRGL--IGVMHDWCEPFD-TYP-RTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l----~~~~erGl--ig~~~~~ce~~~-~yp-~tyDliha~~~ 591 (666)
.|||+|||.|.+...|+++.-+ .|++.+|. .+++ +.+.++|+ +-+++.-.+.+. .+| .++|.|+....
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~---~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPD---INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTT---SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred eEEEEEecCcHHHHHHHHhCCC---CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 4999999999999999987312 26777774 4444 44556677 555544433322 244 89999887644
Q ss_pred cccCCC----CCCH-HHHHHHhhhcccCCeEEEE-EeChhHHHHHHHHHHhcCcEE
Q 005981 592 FSVESK----RCNM-STIMLEMDRMLRPGGHVYI-RDSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 592 f~~~~~----~c~~-~~~l~E~dRiLRPgG~~ii-~d~~~~~~~~~~i~~~l~W~~ 641 (666)
.-..+. +..+ +.+|.+|.|+|||||.++| ||.....+.+.+.+.......
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~ 164 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 164 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCcc
Confidence 433221 1222 5899999999999999988 588888888877777655443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.56 E-value=5.7e-08 Score=94.07 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=83.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCCh----hHHHhccc--cccccccCCCCCC-CC-CccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTL----PVIYDRGL--IGVMHDWCEPFDT-YP-RTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l----~~~~erGl--ig~~~~~ce~~~~-yp-~tyDliha~~ 590 (666)
..|||+|||.|.+..+|++..-+ .|++.+|- .+.+ .-+.++|+ |-+++...+.+.. +| .++|.||+..
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~---~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPD---INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEeccCCHHHHHHHHHCCC---CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 35999999999999999887212 26666663 3444 44455677 6667666555543 45 8999999752
Q ss_pred ccc-----cCCCCCCHHHHHHHhhhcccCCeEEEE-EeChhHHHHHHHHHHhcCcEEEE
Q 005981 591 LFS-----VESKRCNMSTIMLEMDRMLRPGGHVYI-RDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 591 ~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~ii-~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
--- |.+.|=--+.+|.++.|+|+|||.++| ||..+..+.+.+......|....
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccc
Confidence 211 122221125899999999999999988 68888887777777777776554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.56 E-value=1e-07 Score=95.66 Aligned_cols=117 Identities=12% Similarity=0.069 Sum_probs=82.0
Q ss_pred CCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc-
Q 005981 247 GGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA- 322 (666)
Q Consensus 247 ggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~- 322 (666)
..++|..+...-..++.+.+. ++.+|||+|||+|.++..++.+ +|+++|+++..+..++. .++..++..
T Consensus 86 ~~~~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~-N~~~n~l~~~ 158 (260)
T d2frna1 86 AKIMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVEDR 158 (260)
T ss_dssp TTSCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTCTTT
T ss_pred ccccEecCCHHHHHHHHhhcC------CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHH-HHHHhCCCce
Confidence 345555554444455666553 4589999999999998877643 89999999988877664 455566654
Q ss_pred -eEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 323 -MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 323 -~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+...|+..++ ..+.||.|++... .....++.++.++|++||.+.+..
T Consensus 159 v~~~~~D~~~~~-~~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 159 MSAYNMDNRDFP-GENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp EEEECSCTTTCC-CCSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEcchHHhc-cCCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEEEe
Confidence 34445665554 3578999986432 334567888999999999987653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=8.4e-08 Score=98.93 Aligned_cols=102 Identities=19% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeeccc----CCCCCCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATR----RLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e----~Lpf~d~sFDlVv~s~~ 347 (666)
+++|||++||+|.++.+++.. +|+++|+++.++..++. .+...|+.. .+...|.. .++...++||+|++..-
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHH-HHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 479999999999999888744 89999999999988874 455567653 33444432 23345678999997543
Q ss_pred ccccc--------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWT--------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~--------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...-. .+...++..+.++|||||.+++++-
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22211 1123678889999999999999874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.54 E-value=9.6e-08 Score=93.97 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=83.1
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCCCCChhHHHhccc-cccccccCCC--CCCCCCccc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEP--FDTYPRTYD 584 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~~~~l~~~~erGl-ig~~~~~ce~--~~~yp~tyD 584 (666)
++++.|.. |||+|||.|+++.+|++. | .|+..-+.|.........+..++. ..+..+-..+ +......+|
T Consensus 69 l~i~pG~~--VLDlGaGsG~~t~~la~~VG~~G-~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 69 FPIKPGKS--VLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCTTCE--EEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cccCCCCE--EEEeccCCCHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceE
Confidence 45677765 999999999999999975 4 244443333221222334444454 3333332211 122236788
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe----------ChhHHHHHHHHHHhcCcEEEEE-eccCCC-CC
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD----------SIDVMDELQEIGKAMGWHVTLR-ETAEGP-HA 652 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d----------~~~~~~~~~~i~~~l~W~~~~~-~~~~~~-~~ 652 (666)
+|+++ +.+.. ....++.++.|+|||||+++|.. ..++...++++++. .++..-. +. .| +.
T Consensus 146 ~i~~d--~~~~~---~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L--~p~~~ 217 (227)
T d1g8aa_ 146 VIFED--VAQPT---QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNL--EPYEK 217 (227)
T ss_dssp EEEEC--CCSTT---HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEEC--TTTSS
T ss_pred EEEEE--ccccc---hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcC--CCCCC
Confidence 88775 22221 23578999999999999999962 23445666666654 6776433 22 23 23
Q ss_pred ceEEEEEEeC
Q 005981 653 SYRILTADKR 662 (666)
Q Consensus 653 ~e~~l~~~k~ 662 (666)
...+.+++|+
T Consensus 218 ~H~~vv~rK~ 227 (227)
T d1g8aa_ 218 DHALFVVRKT 227 (227)
T ss_dssp SEEEEEEECC
T ss_pred ceEEEEEEeC
Confidence 4567788875
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=6.6e-08 Score=99.34 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=71.3
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCC----hhHHHhccc---cccccccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNT----LPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~----l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|||+|||+|.++..+++.|.. .|+.+|...+ .+.+...|+ |.+.+...+.+..-+..||+|.+..+..
T Consensus 36 ~VLDiGcG~G~ls~~aa~~Ga~----~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 36 VVLDVGSGTGILCMFAAKAGAR----KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp EEEEETCTTSHHHHHHHHTTCS----EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred EEEEEecCCcHHHHHHHHhCCC----EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 4999999999999999998752 2444443222 344455677 5566666566554448999999976666
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
...+...++.++.+++|+|||||.+|-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 666666789999999999999999884
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.53 E-value=8.6e-08 Score=93.56 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=73.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp 333 (666)
....+++.+. + .++.+|||||||+|..+..|+.. +|+++|..+..+..++.. ..+.+..+ .+...|.....
T Consensus 66 ~~a~ml~~L~-l---~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~-l~~~g~~nv~~~~gd~~~g~ 140 (215)
T d1jg1a_ 66 MVAIMLEIAN-L---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRN-LERAGVKNVHVILGDGSKGF 140 (215)
T ss_dssp HHHHHHHHHT-C---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCGGGCC
T ss_pred hHHHHHHhhc-c---CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHH-HHHcCCceeEEEECccccCC
Confidence 3455566654 2 45579999999999988877643 799999999877777644 44455544 44444544433
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
...+.||.|++..+..+. +. .+...|++||.+++-
T Consensus 141 ~~~~pfD~Iiv~~a~~~i---p~----~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 141 PPKAPYDVIIVTAGAPKI---PE----PLIEQLKIGGKLIIP 175 (215)
T ss_dssp GGGCCEEEEEECSBBSSC---CH----HHHHTEEEEEEEEEE
T ss_pred cccCcceeEEeecccccC---CH----HHHHhcCCCCEEEEE
Confidence 456889999987665443 22 245679999999875
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.53 E-value=7e-08 Score=95.12 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=85.3
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCC--CceEEEEeeccCCCCChhHHHh----ccc-cccccccCCCCCCCC-Cc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQK--FDCWVMNVVPVSGFNTLPVIYD----RGL-IGVMHDWCEPFDTYP-RT 582 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~--~~vwvmnv~~~~~~~~l~~~~e----rGl-ig~~~~~ce~~~~yp-~t 582 (666)
.++++.|.- |||+|||+|.++.+|++.+ -.|+.+.+.| .+++.+.+ |+. +-+..+...+ ..|. .+
T Consensus 69 ~l~ikpG~~--VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~----~~i~~a~~~a~~~~ni~~i~~d~~~~-~~~~~~~ 141 (230)
T d1g8sa_ 69 VMPIKRDSK--ILYLGASAGTTPSHVADIADKGIVYAIEYAP----RIMRELLDACAERENIIPILGDANKP-QEYANIV 141 (230)
T ss_dssp CCCCCTTCE--EEEESCCSSHHHHHHHHHTTTSEEEEEESCH----HHHHHHHHHTTTCTTEEEEECCTTCG-GGGTTTC
T ss_pred hCCCCCCCE--EEEeCEEcCHHHHHHHHhCCCCEEEEEeCcH----HHHHHHHHHHhhhcccceEEEeeccC-ccccccc
Confidence 345666654 9999999999999999862 2244444444 45544444 454 3344444333 3343 67
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC----------hhHHHHHHHHHHhcCcEEEEEeccCCCCC
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETAEGPHA 652 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~----------~~~~~~~~~i~~~l~W~~~~~~~~~~~~~ 652 (666)
+|++.+...+.+. ...+.++.|+.|+|||||+++|.+. ....+++.+.++.-..+..-..+ -.|..
T Consensus 142 ~~v~~i~~~~~~~---~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~id-L~py~ 217 (230)
T d1g8sa_ 142 EKVDVIYEDVAQP---NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVD-IEPFE 217 (230)
T ss_dssp CCEEEEEECCCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEE-CTTTS
T ss_pred ceeEEeeccccch---HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEec-CCCCc
Confidence 7766554444433 3457889999999999999999732 23456677777777887654322 23444
Q ss_pred ceEEEE
Q 005981 653 SYRILT 658 (666)
Q Consensus 653 ~e~~l~ 658 (666)
+.-+||
T Consensus 218 ~~H~~v 223 (230)
T d1g8sa_ 218 KDHVMF 223 (230)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 444443
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.51 E-value=1.1e-07 Score=93.13 Aligned_cols=108 Identities=12% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHHHhhcc-cccCCCCCCeEEEECCCCchhHHHhccC----------CeEEEeCCcchHHHHHHHHHHH----cCC-C
Q 005981 258 YLDQIAKMVP-DITWGHHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALE----RGA-P 321 (666)
Q Consensus 258 ~i~~L~~~L~-~i~~g~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiS~~~l~~a~~~~a~~----rg~-~ 321 (666)
....+++.+. ++ .++.+|||||||+|.++..|++. +|+++|..+..+..++.+.... .+. .
T Consensus 66 ~~a~~l~~L~~~l---~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n 142 (223)
T d1r18a_ 66 MHAFALEYLRDHL---KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 142 (223)
T ss_dssp HHHHHHHHTTTTC---CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHhhcc---CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE
Confidence 3445666653 23 35589999999999988777643 5999999998887776543221 122 2
Q ss_pred ceEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 322 AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 322 ~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
..+...|......+.+.||.|++..+..+. + ..+.+.||+||.+++-
T Consensus 143 v~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~-p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 143 LLIVEGDGRKGYPPNAPYNAIHVGAAAPDT-P------TELINQLASGGRLIVP 189 (223)
T ss_dssp EEEEESCGGGCCGGGCSEEEEEECSCBSSC-C------HHHHHTEEEEEEEEEE
T ss_pred EEEEecccccccccccceeeEEEEeechhc-h------HHHHHhcCCCcEEEEE
Confidence 234444544444456789999987775444 2 2467899999999885
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.48 E-value=6.8e-08 Score=92.50 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCch----hHHHhccC--------CeEEEeCCcchHHHHHHHH-------------HHHc----CCC--c
Q 005981 274 HIRVVMDAGCGVAS----FGAYLLPR--------NVITMSIAPKDVHENQIQF-------------ALER----GAP--A 322 (666)
Q Consensus 274 ~~~~VLDIGCGtG~----~a~~L~~~--------~V~gvDiS~~~l~~a~~~~-------------a~~r----g~~--~ 322 (666)
..-+|+++|||+|. ++..+.+. +|+|+|+++..+..|+... .... +.. .
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 44689999999993 44444321 6999999999887775210 0000 000 0
Q ss_pred ------------eEEeec-ccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 005981 323 ------------MVAAFA-TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 323 ------------~~~~~d-~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~s 375 (666)
.+...+ ....+.+.+.||+|+|.++++.+.++. ..+++.+++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 011111 111223457899999999988874333 48999999999999999876
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.40 E-value=3.6e-07 Score=85.71 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=75.0
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc-
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR- 330 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e- 330 (666)
......+.|...+.... ..+.+|||+|||+|.++...+.+ +|+++|.++.++..++.+ ++..++...+...+.+
T Consensus 23 t~~~v~e~lf~~l~~~~--~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N-~~~~~~~~~v~~~~~d~ 99 (171)
T d1ws6a1 23 SPVRLRKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VRRTGLGARVVALPVEV 99 (171)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHHTCCCEEECSCHHH
T ss_pred CcHHHHHHHHHHhhccc--cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH-HHhhccccceeeeehhc
Confidence 33444445554444211 23479999999999999877665 899999999988877654 4455665544433322
Q ss_pred ---CCCCCCCCeeEEEecccccccccChHHHHHHH--HHhccCCeEEEEEE
Q 005981 331 ---RLPYPSQAFDLIHCSRCRINWTRDDGILLLEV--NRMLRAGGYFAWAA 376 (666)
Q Consensus 331 ---~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el--~RvLkPGG~lv~st 376 (666)
.......+||+|++.-. .+. +....+.++ ..+|++||++++..
T Consensus 100 ~~~~~~~~~~~fD~If~DPP-Y~~--~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 100 FLPEAKAQGERFTVAFMAPP-YAM--DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCC-TTS--CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ccccccccCCccceeEEccc-ccc--CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 12234578999997543 222 334444444 35799999998874
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.38 E-value=7.8e-07 Score=91.52 Aligned_cols=110 Identities=10% Similarity=0.065 Sum_probs=73.7
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecc-c---CCCCCCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFAT-R---RLPYPSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~-e---~Lpf~d~sFDlVv~ 344 (666)
+++|||++||+|.++.+++.. .|+++|+++..+..++.+.. .+++. ..+...|+ + .+.-..+.||+|++
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 479999999999998876543 79999999999988875544 44542 23344443 1 12224568999997
Q ss_pred ccccc--------ccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHH
Q 005981 345 SRCRI--------NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385 (666)
Q Consensus 345 s~~l~--------h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~e 385 (666)
.--.+ ....+...++..+.++|+|||.+++++....-+..+
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~ 272 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQ 272 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHH
Confidence 43211 111223468888999999999999987533333333
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.25 E-value=3e-07 Score=84.47 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC-CCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~-Lpf~d~sFDlVv~s~~ 347 (666)
.+.+|||+|||+|.++...+.+ +|+++|.++.++..++. .+...+... .+...|+.. +....++||+|++...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~-n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhh-hhhhcccccchhhhcccccccccccccccceeEechh
Confidence 3579999999999999766544 89999999988877664 444445443 333334333 3345688999996432
Q ss_pred ccccccChHHHHHHH--HHhccCCeEEEEEE
Q 005981 348 RINWTRDDGILLLEV--NRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~~~~L~el--~RvLkPGG~lv~st 376 (666)
... ......+..+ .+.|++||.+++..
T Consensus 93 -y~~-~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 -YAK-ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp -SHH-HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -hcc-chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 111 1123455544 35799999998874
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=2.1e-06 Score=87.75 Aligned_cols=102 Identities=10% Similarity=-0.000 Sum_probs=68.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC----CCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR----LPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~----Lpf~d~sFDlVv~ 344 (666)
.+.+|||++||+|.++.+++.. +|++||.|...+..++.+... .++. ..+...|+.. .....+.||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 4579999999999999888765 899999999999888765444 4443 2344444321 1123578999997
Q ss_pred ccccc-------cc--ccChHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRI-------NW--TRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~-------h~--~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.--.+ .| ..+...++..+.++|+|||.+++.+
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 42211 11 1223456677889999999766554
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.23 E-value=1.1e-06 Score=87.09 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=70.4
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC-C-ceEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~-~-~~~~~~d~e~ 331 (666)
..+.+.+..... ...++|||||||+|.++..++++ +++..|+-. . ...... . ..+...|..+
T Consensus 68 ~~~~l~~~~~~f---~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v--------i~~~~~~~ri~~~~gd~~~ 135 (244)
T d1fp1d2 68 EMKRMLEIYTGF---EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-V--------IENAPPLSGIEHVGGDMFA 135 (244)
T ss_dssp HHHHHHHHCCTT---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H--------HTTCCCCTTEEEEECCTTT
T ss_pred HHHHHHHhcccc---cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-h--------hhccCCCCCeEEecCCccc
Confidence 344555555422 34579999999999999999866 778888632 1 111221 2 2233334321
Q ss_pred CCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+ ..|++++..++|+|.++. ..+|+++++.|+|||.+++.+.
T Consensus 136 -~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 136 -SVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp -CCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 233 459999999999994332 3889999999999999999864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=2.9e-06 Score=80.16 Aligned_cols=119 Identities=9% Similarity=0.012 Sum_probs=76.5
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEee
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAF 327 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~ 327 (666)
++..+...+.+...+.... ...+|||++||+|.++...+.+ +|+.||.++..+..++.+.. ..+... .+...
T Consensus 24 RPt~~~vre~lfn~l~~~~---~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~-~~~~~~~~ii~~ 99 (183)
T d2fpoa1 24 RPTTDRVRETLFNWLAPVI---VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLA-TLKAGNARVVNS 99 (183)
T ss_dssp ---CHHHHHHHHHHHHHHH---TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH-HTTCCSEEEECS
T ss_pred CcCcHHHHHHHHhhhhccc---chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHh-hccccceeeeee
Confidence 3445555666666665322 2378999999999999877665 89999999988877765544 344433 23333
Q ss_pred c-ccCCCCCCCCeeEEEecccccccccChHHHHHHHHH--hccCCeEEEEEE
Q 005981 328 A-TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAA 376 (666)
Q Consensus 328 d-~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~R--vLkPGG~lv~st 376 (666)
| ...+......||+|++.-- ... ......+..+.+ +|+++|.+++-.
T Consensus 100 d~~~~l~~~~~~fDlIf~DPP-Y~~-~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 100 NAMSFLAQKGTPHNIVFVDPP-FRR-GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp CHHHHHSSCCCCEEEEEECCS-SST-TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccccccccccccCEEEEcCc-ccc-chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 3 2233345678999997543 111 234466666554 699999998864
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.12 E-value=3.1e-06 Score=81.15 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=47.1
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+++|||+|||+|.++..++.. +|+++|+++.++..++ ++.....+...|+.+++ +.||+|+++--
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar-----~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK-----RNCGGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHH-----HHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHH-----HccccccEEEEehhhcC---CcceEEEeCcc
Confidence 4589999999999887665543 7999999997765443 33223345555666653 68999998744
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.10 E-value=3.8e-06 Score=80.60 Aligned_cols=71 Identities=17% Similarity=0.042 Sum_probs=52.5
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
.+.+|||+|||+|.++..++.+ +|+|+|+++.++..++. .+...+....+...+...+ ++.||+|+++-..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~-N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHH-HHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 4579999999999988766544 79999999998877764 3445566655655555544 4679999987553
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.10 E-value=4.7e-07 Score=87.86 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=62.4
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT 578 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~ 578 (666)
...+.++++.|. +|||+|||+|.+++.|++. |-.. .|+.++. +.+++.+.++ |+ +-+.+.. ....
T Consensus 66 ~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g---~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d--~~~~ 138 (213)
T d1dl5a1 66 LFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKG---LVVSVEYSRKICEIAKRNVERLGIENVIFVCGD--GYYG 138 (213)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--GGGC
T ss_pred HHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCC---cEEEeecchhhHHHhhhhHhhhcccccccccCc--hHHc
Confidence 345667777775 5999999999999999764 2111 2334442 3455555443 34 2222322 2233
Q ss_pred CC--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 579 YP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 579 yp--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+| .+||.|++...+.+. ..++-|.|||||.+|+-
T Consensus 139 ~~~~~~fD~I~~~~~~~~~---------p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEV---------PETWFTQLKEGGRVIVP 174 (213)
T ss_dssp CGGGCCEEEEEECSBBSCC---------CHHHHHHEEEEEEEEEE
T ss_pred cccccchhhhhhhccHHHh---------HHHHHHhcCCCcEEEEE
Confidence 33 789999998766543 23556789999999985
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=1.9e-06 Score=82.38 Aligned_cols=114 Identities=10% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC--
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-- 332 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L-- 332 (666)
++++.+.+.. .+...+||++||+|..+..++++ +|+|+|.++.++..++..... .+....+.......+
T Consensus 12 l~evi~~l~~----~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~-~~~r~~~~~~~f~~~~~ 86 (192)
T d1m6ya2 12 VREVIEFLKP----EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE-FSDRVSLFKVSYREADF 86 (192)
T ss_dssp HHHHHHHHCC----CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG-GTTTEEEEECCGGGHHH
T ss_pred HHHHHHhhCC----CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc-ccccccchhHHHhhHHH
Confidence 5566666642 45579999999999998888764 899999999998777643322 222233333333332
Q ss_pred ---CCCCCCeeEEEeccc--ccccc------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 ---PYPSQAFDLIHCSRC--RINWT------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 ---pf~d~sFDlVv~s~~--l~h~~------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+..++||.|+.-.. ..++. ......|..+.++|+|||.+++.++
T Consensus 87 ~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 87 LLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 244578999985322 12221 2234788899999999999998864
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=7.4e-06 Score=79.71 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-ccCCC-----CCCCCee
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLP-----YPSQAFD 340 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d-~e~Lp-----f~d~sFD 340 (666)
+.++|||||||+|..+.+++.. +|+++|.++.....|+..+ .+.|... .+...+ .+.++ ...++||
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~-~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHH-HhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 3479999999999888888754 8999999998877776444 3445443 223333 22222 2357899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|+.. +.......++..+.+.|+|||.+++..
T Consensus 138 ~ifiD----~dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 138 VAVVD----ADKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEEC----SCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEe----CCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 99953 333445678899999999999999974
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.01 E-value=5.7e-06 Score=81.75 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=64.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..++++ +++..|+.. .+ +.+... -...+...|... +. ..+|++++.+++|
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-----~~~~~~-~rv~~~~gD~f~-~~--p~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-----ENLSGS-NNLTYVGGDMFT-SI--PNADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-----TTCCCB-TTEEEEECCTTT-CC--CCCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-----HhCccc-CceEEEecCccc-CC--CCCcEEEEEeecc
Confidence 3468999999999999888765 788888742 11 111111 122344445432 22 3579999999999
Q ss_pred ccccCh-HHHHHHHHHhccCC---eEEEEEEC
Q 005981 350 NWTRDD-GILLLEVNRMLRAG---GYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~-~~~L~el~RvLkPG---G~lv~st~ 377 (666)
+|.++. ..+|+++++.|+|| |.+++...
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 994332 38899999999999 77777754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.00 E-value=9e-06 Score=76.71 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=79.7
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEe
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAA 326 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~ 326 (666)
++..+...+.+...|... ..+.+|||++||+|.++...+.+ .|+++|.++..+..++.+... .+.. ..+..
T Consensus 22 RPt~~~vrealFn~l~~~---~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~-~~~~~~~~i~~ 97 (182)
T d2fhpa1 22 RPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAI-TKEPEKFEVRK 97 (182)
T ss_dssp CCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEE
T ss_pred CcCcHHHHHHHHHHHHHh---cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhh-hhccccccccc
Confidence 455666777777777643 24589999999999999977766 799999999888776654433 3333 23344
Q ss_pred ecccC----CCCCCCCeeEEEecccccccccChHHHHHHHHH--hccCCeEEEEEE
Q 005981 327 FATRR----LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAA 376 (666)
Q Consensus 327 ~d~e~----Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~R--vLkPGG~lv~st 376 (666)
.|+.+ +.-....||+|++.-- ... .+....+..+.. +|+++|++++-.
T Consensus 98 ~D~~~~l~~~~~~~~~fDlIflDPP-Y~~-~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 98 MDANRALEQFYEEKLQFDLVLLDPP-YAK-QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCC-GGG-CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccchhhhhhhcccCCCcceEEechh-hhh-hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 34322 2223568999996543 222 344567777654 699999998764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.00 E-value=4.9e-06 Score=81.98 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=63.8
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
..++|||||||+|.++..++++ ++++.|+... +. .+.. .....+...|... +.|. .|.++..++++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-----~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh 150 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-----DAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWICH 150 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-----TCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSST
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-----hccc-CCceEEecccccc-cCCC--cceEEEEEEee
Confidence 4578999999999999999875 8889998653 21 1111 1122333444322 3332 35666788888
Q ss_pred ccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|.++ ...+|+++++.|+|||.+++...
T Consensus 151 ~~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 151 DWSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 88432 34899999999999999988853
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.00 E-value=5.1e-06 Score=80.49 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=66.3
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecc-cCCC-----CCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RRLP-----YPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~-e~Lp-----f~d~sFDl 341 (666)
+++|||||||+|..+..|+.. +|+++|+++.++..++..+ ...|+.. .+...+. +-++ +..+.||+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceeeeccccccccchhhcccccccce
Confidence 479999999999888888753 7999999998887776544 3445533 2333332 2222 34578999
Q ss_pred EEecccccccccC--hHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st 376 (666)
|+.- ++... ....+.+..++|||||++++..
T Consensus 136 ifiD----~~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 136 VFLD----HWKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEC----SCGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeec----ccccccccHHHHHHHhCccCCCcEEEEeC
Confidence 9854 22122 2245778889999999987754
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=3.4e-05 Score=76.26 Aligned_cols=92 Identities=10% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHHHhhcccccC-CCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEee--ccc
Q 005981 258 YLDQIAKMVPDITW-GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF--ATR 330 (666)
Q Consensus 258 ~i~~L~~~L~~i~~-g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~--d~e 330 (666)
|...+.+++..... .....+|||||||+|..+..|+.+ +++|+|+++.++..|+.+ ++..++...+... +..
T Consensus 44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N-~~~n~l~~~~~~~~~~~~ 122 (250)
T d2h00a1 44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN-VEQNNLSDLIKVVKVPQK 122 (250)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH-HHHhCCCcceeeeeeccH
Confidence 44445544432211 134468999999999877777654 999999999999888754 4445555432221 111
Q ss_pred -CC-----CCCCCCeeEEEecccccc
Q 005981 331 -RL-----PYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 331 -~L-----pf~d~sFDlVv~s~~l~h 350 (666)
.+ ...+++||+|+|+--.+.
T Consensus 123 ~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 123 TLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred HhhhhhhhhcccCceeEEEecCcccc
Confidence 11 123568999999876553
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.97 E-value=5.9e-06 Score=81.99 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=75.2
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---cccc-cccCCCCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVM-HDWCEPFDTY 579 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~-~~~ce~~~~y 579 (666)
..+++..|. +|||+|||+|+++.+|+.. |-.- .|..+|. +.+++.|.++ +. +.+. .|.+|.+.
T Consensus 79 ~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~-- 151 (250)
T d1yb2a1 79 MRCGLRPGM--DILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-- 151 (250)
T ss_dssp --CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--
T ss_pred HHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--
Confidence 345677774 4999999999999988864 1100 3555563 5677777664 32 3333 44444432
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWH 640 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~ 640 (666)
..+||.|..+ .. +-..+|.++.|+|||||.+++.-. .+.+.++-+.++.-.|.
T Consensus 152 ~~~fD~V~ld-----~p---~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 152 DQMYDAVIAD-----IP---DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp SCCEEEEEEC-----CS---CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred cceeeeeeec-----CC---chHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 3899999865 11 224789999999999999998643 44555666666666664
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.96 E-value=8.4e-06 Score=83.32 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCCCeEEEECCCCchhHHHhcc----C-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP----R-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv 343 (666)
....+|||.|||+|.+...+.. + +++|+|+++.++..|+..... .+........+... ......||+|+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~-~~~~~~~~~~d~~~-~~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQKMTLLHQDGLA-NLLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTCCCEEEESCTTS-CCCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH-hhhhhhhhcccccc-ccccccccccc
Confidence 4557899999999998877642 1 699999999888777654443 34444343333222 23457899999
Q ss_pred ecccccccccC----------------h-HHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRINWTRD----------------D-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d----------------~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
++--+.....+ . ..++..+.+.|++||.+++..+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 87553221110 1 1468889999999999888754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=1.2e-05 Score=80.56 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceE--Eeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMV--AAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~--~~~d~ 329 (666)
....++.+.+.+.. ....++||+|||+|..+..++.. +|+++|+|+..+..|+. .++..+....+ ...+.
T Consensus 95 TE~lv~~~~~~~~~----~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~-Na~~~~~~~~~~i~~~~~ 169 (271)
T d1nv8a_ 95 TEELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEF 169 (271)
T ss_dssp HHHHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESST
T ss_pred hhhhhhhhhhhhcc----ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHH-HHHHcCCCceeEEeeccc
Confidence 44556666655543 23468999999999776666533 89999999999888874 45566664432 23332
Q ss_pred -cCCCCCCCCeeEEEecccccccc--------cChH----------HHHHH-HHHhccCCeEEEEEE
Q 005981 330 -RRLPYPSQAFDLIHCSRCRINWT--------RDDG----------ILLLE-VNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 -e~Lpf~d~sFDlVv~s~~l~h~~--------~d~~----------~~L~e-l~RvLkPGG~lv~st 376 (666)
+.++...+.||+|+|+--.+.-. -++. .++++ +.+.|+|||.+++-.
T Consensus 170 ~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 170 LEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp TGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred ccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 22232347899999874322110 0111 22333 568899999998873
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=6.8e-06 Score=82.26 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=76.5
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc---ccccc-ccCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMH-DWCEPF 576 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~-~~ce~~ 576 (666)
...+++..|.. |||+|||.|+++.+|+.. +. .|+.+|. +.+++.|.++ |+ +-+.+ |-++.+
T Consensus 96 i~~l~i~pG~~--VLDiG~GsG~lt~~lA~~~~~~G-----~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~ 168 (266)
T d1o54a_ 96 AMMLDVKEGDR--IIDTGVGSGAMCAVLARAVGSSG-----KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF 168 (266)
T ss_dssp HHHTTCCTTCE--EEEECCTTSHHHHHHHHHTTTTC-----EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC
T ss_pred HHhhCCCCCCE--EEECCCCCCHHHHHHHHHhCCCc-----EEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc
Confidence 45667777765 999999999999999864 22 3555553 4666665442 55 22222 222222
Q ss_pred CCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcE
Q 005981 577 DTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 577 ~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~ 640 (666)
. ...||.|... -.+...+|.++.|+|||||.+++- -..+.++++-+.++...|.
T Consensus 169 ~--~~~~D~V~~d--------~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 169 D--EKDVDALFLD--------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp S--CCSEEEEEEC--------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred c--ccceeeeEec--------CCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 2 2778877543 234568999999999999999875 4556667777777777775
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=2.4e-06 Score=90.48 Aligned_cols=109 Identities=9% Similarity=0.086 Sum_probs=66.8
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccc------------cccc-
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL------------IGVM- 569 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGl------------ig~~- 569 (666)
+.+..+.++++.+.. |||+|||.|.++..++.. |+. .|+.+| ++.++.+|.++.- .+..
T Consensus 205 i~~Il~~l~Lkpgd~--fLDLGCG~G~~vl~aA~~~g~~----~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~ 278 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDT--FMDLGSGVGNCVVQAALECGCA----LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278 (406)
T ss_dssp HHHHHHHTTCCTTCE--EEEESCTTSHHHHHHHHHHCCS----EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHHhCCCCCCE--EEeCCCCCcHHHHHHHHHcCCC----eEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence 444556677888875 999999999999988876 541 345555 3566666655421 0100
Q ss_pred cccCCCCCC---CC---CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 570 HDWCEPFDT---YP---RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 570 ~~~ce~~~~---yp---~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
......|.. ++ ...|+|.+.. +.+.. ++...|.||-|+|||||.+|..|.
T Consensus 279 ~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~---~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 279 FSLKKSFVDNNRVAELIPQCDVILVNN-FLFDE---DLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECC-TTCCH---HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred eeeeechhhccccccccccceEEEEec-ccCch---HHHHHHHHHHHhcCCCcEEEEecc
Confidence 011111111 11 2456776643 22222 457899999999999999998753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.84 E-value=5.8e-06 Score=81.69 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=86.5
Q ss_pred CCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEecccc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~~f 592 (666)
...++.|||+|||.|.++++|+++ +..+.++..-. .++.+....-|... +|. |...| ..|++...+++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-----vi~~~~~~~ri~~~~gd~---~~~~p-~~D~~~l~~vL 149 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-----VIENAPPLSGIEHVGGDM---FASVP-QGDAMILKAVC 149 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-----HHTTCCCCTTEEEEECCT---TTCCC-CEEEEEEESSG
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-----hhhccCCCCCeEEecCCc---ccccc-cceEEEEehhh
Confidence 467899999999999999999887 44444444322 22111111113333 665 44455 45999999999
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---------h--------------------HHHHHHHHHHhcCcEEE-
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------D--------------------VMDELQEIGKAMGWHVT- 642 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---------~--------------------~~~~~~~i~~~l~W~~~- 642 (666)
..+.+. +...+|..+.+.|+|||.++|.|.+ . ..++.+++++.-.++..
T Consensus 150 h~~~de-~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 150 HNWSDE-KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228 (244)
T ss_dssp GGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred hhCCHH-HHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceE
Confidence 887652 2358999999999999999997521 0 13566778888888754
Q ss_pred EEeccCCCCCceEEEEEEe
Q 005981 643 LRETAEGPHASYRILTADK 661 (666)
Q Consensus 643 ~~~~~~~~~~~e~~l~~~k 661 (666)
+..... ....|+=|+|
T Consensus 229 v~~~~~---~~~~viE~~K 244 (244)
T d1fp1d2 229 VACRAF---NSLGVMEFYK 244 (244)
T ss_dssp EEEEET---TTEEEEEEEC
T ss_pred EEecCC---CCEEEEEEeC
Confidence 333222 2445666665
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=5.6e-06 Score=83.29 Aligned_cols=132 Identities=16% Similarity=0.327 Sum_probs=86.3
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccc-cccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVM-HDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~-~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||+|||+|-.|.+|+...-+ ..|+.+|- +..+.+|.+. |+ +.++ .||.++++. ..||+|.|+-=+
T Consensus 111 ~vlDlGtGSG~I~i~la~~~p~---~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPY 185 (274)
T d2b3ta1 111 RILDLGTGTGAIALALASERPD---CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVSNPPY 185 (274)
T ss_dssp EEEEETCTTSHHHHHHHHHCTT---SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEECCCC
T ss_pred ceeeeehhhhHHHHHHHhhCCc---ceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEecchh
Confidence 3999999999999999775211 25666663 4555555432 43 4444 566443322 699999996322
Q ss_pred c-------------cCCCC---------CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcE-EEEEeccCC
Q 005981 593 S-------------VESKR---------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH-VTLRETAEG 649 (666)
Q Consensus 593 ~-------------~~~~~---------c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~-~~~~~~~~~ 649 (666)
- +.... -.+..++.+..+.|+|||++++--..+..+.+.++++.-.|. +.+...-
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl-- 263 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY-- 263 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT--
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECC--
Confidence 1 11100 012368899999999999999964445568889999998986 4444332
Q ss_pred CCCceEEEEEE
Q 005981 650 PHASYRILTAD 660 (666)
Q Consensus 650 ~~~~e~~l~~~ 660 (666)
.+..++++++
T Consensus 264 -~g~~R~v~~r 273 (274)
T d2b3ta1 264 -GDNERVTLGR 273 (274)
T ss_dssp -TSSEEEEEEE
T ss_pred -CCCceEEEEe
Confidence 3478898885
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.74 E-value=2e-05 Score=79.10 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=73.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHc----------CCCceEEeecccCCCCCCCCe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER----------GAPAMVAAFATRRLPYPSQAF 339 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~r----------g~~~~~~~~d~e~Lpf~d~sF 339 (666)
.++++||.||+|.|..+..+.+. +|++||+++..+..++.-+.... .....+...|....--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 45689999999999999888765 79999999987766543221110 111233333422111125789
Q ss_pred eEEEecccccccccC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 005981 340 DLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (666)
Q Consensus 340 DlVv~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~ 393 (666)
|+|++- +....... ...+++.+.+.|+|||.+++.....+.....+......+
T Consensus 151 DvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl 207 (276)
T d1mjfa_ 151 DVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEM 207 (276)
T ss_dssp EEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHH
T ss_pred CEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHH
Confidence 999953 32333211 147899999999999999886432233334444333333
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=3.7e-05 Score=78.94 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=70.6
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc--------------c---ccccc
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR--------------G---LIGVM 569 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er--------------G---lig~~ 569 (666)
...+++..|.. |||+|||.|+++.+|+.. |-+- .|..+|. +.+++.|.++ + -+.+.
T Consensus 91 l~~l~i~pG~r--VLE~GtGsG~lt~~LAr~vg~~G---~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 91 LSMMDINPGDT--VLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHTCCTTCE--EEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHhCCCCCCE--EEEecccccHHHHHHHHHhCCCc---EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 45677887765 999999999999999864 2110 2444442 4556555442 1 12333
Q ss_pred c-ccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHH--hcCcEE
Q 005981 570 H-DWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGK--AMGWHV 641 (666)
Q Consensus 570 ~-~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~--~l~W~~ 641 (666)
| |.++....++ ..||.|..+ ..+. ..+|.|+.|+|||||.+++- =..+.+.++-+.++ .+.|..
T Consensus 166 ~~di~~~~~~~~~~~fD~V~LD-----~p~P---~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~ 234 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVALD-----MLNP---HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC 234 (324)
T ss_dssp ESCTTCCC-------EEEEEEC-----SSST---TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred ecchhhcccccCCCCcceEeec-----CcCH---HHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCcee
Confidence 3 3333333344 789988653 1211 35799999999999999974 45555555555554 467854
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.70 E-value=4.1e-05 Score=76.33 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=73.3
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc------cc---cccccccCCCC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR------GL---IGVMHDWCEPF 576 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er------Gl---ig~~~~~ce~~ 576 (666)
....+++..|.. |||+|||.|+++.+|+.. |-.- .|..+|. +.+++.|.++ +. +.+.+.....
T Consensus 88 Ii~~l~i~PG~~--VLE~G~GsG~lt~~La~~vgp~G---~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~- 161 (264)
T d1i9ga_ 88 IVHEGDIFPGAR--VLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD- 161 (264)
T ss_dssp HHHHTTCCTTCE--EEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG-
T ss_pred HHHHhCCCCCCE--EEecCcCCcHHHHHHHHhhCCCc---EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc-
Confidence 345677777765 999999999999999865 1100 2444553 5677776552 11 2222222221
Q ss_pred CCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHH-HhcCcE
Q 005981 577 DTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIG-KAMGWH 640 (666)
Q Consensus 577 ~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~-~~l~W~ 640 (666)
..+| .+||.|..+ ..+. ..++.++.|+|||||.+++- -..+.+.++-+.+ ..-.|.
T Consensus 162 ~~~~~~~fDaV~ld-----lp~P---~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 162 SELPDGSVDRAVLD-----MLAP---WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp CCCCTTCEEEEEEE-----SSCG---GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred ccccCCCcceEEEe-----cCCH---HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 1344 899998653 2222 47899999999999999885 4454444444444 344463
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=5.9e-06 Score=85.03 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=65.3
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc-----------cc----cccc
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR-----------GL----IGVM 569 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er-----------Gl----ig~~ 569 (666)
...+.++++.+.. |||+|||.|.++..++.. |+ .+++.+|. +.++.+|.++ |+ |.+.
T Consensus 142 ~~~~~~~l~~~~~--vlD~GcG~G~~~~~~a~~~~~----~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~ 215 (328)
T d1nw3a_ 142 QMIDEIKMTDDDL--FVDLGSGVGQVVLQVAAATNC----KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 215 (328)
T ss_dssp HHHHHSCCCTTCE--EEEETCTTSHHHHHHHHHCCC----SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred HHHHHcCCCCCCE--EEEcCCCCCHHHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence 3455667777765 999999999999877654 44 24555653 4555554332 22 4444
Q ss_pred cccCCCCCCCC-Ccc--ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 570 HDWCEPFDTYP-RTY--DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 570 ~~~ce~~~~yp-~ty--Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++..+..+ |. ..+ |+|-+.+ +.+.. ++...|.||-|+|||||.+|..+
T Consensus 216 ~gd~~~~~-~~~~~~~advi~~~~-~~f~~---~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 216 RGDFLSEE-WRERIANTSVIFVNN-FAFGP---EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp ECCTTSHH-HHHHHHHCSEEEECC-TTTCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred ECcccccc-cccccCcceEEEEcc-eecch---HHHHHHHHHHHhCCCCcEEEEec
Confidence 44422221 21 334 5666542 33322 45689999999999999999864
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.66 E-value=8.3e-05 Score=70.51 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=68.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
..++.|.+++.. ..+.+|||.|||+|.|...+.++ .++|+|+++..+..+ ..+.+...+...
T Consensus 6 ~i~~~m~~l~~~----~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~ 72 (223)
T d2ih2a1 6 EVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLL 72 (223)
T ss_dssp HHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGG
T ss_pred HHHHHHHHhcCC----CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhc
Confidence 455666666652 34579999999999988776543 699999998643211 112233333322
Q ss_pred CCCCCCCeeEEEecccccccc---------------------------cCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWT---------------------------RDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~---------------------------~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. ....||+|+++....... .+. ..++..+.+.|++||++++..+
T Consensus 73 ~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 73 WE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 22 357899999875432211 001 2456788899999999988864
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.66 E-value=6.4e-05 Score=76.08 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeec-ccCCCCCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFA-TRRLPYPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d-~e~Lpf~d~sFDlVv 343 (666)
..+++||-||.|.|..++.+.+. +|++||+++..+..++.-+....+ ....+...| .+-+.-.++.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45789999999999999988875 799999999888766543332211 122333333 222222357899999
Q ss_pred ecccccccccC-----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 005981 344 CSRCRINWTRD-----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (666)
Q Consensus 344 ~s~~l~h~~~d-----~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~ 393 (666)
+- +....... ...+++.+.+.|+|||.++......+.....+......+
T Consensus 168 ~D-~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl 221 (295)
T d1inla_ 168 ID-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRI 221 (295)
T ss_dssp EE-C----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHH
T ss_pred Ec-CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHH
Confidence 54 22332111 248899999999999999987543233333333333333
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.63 E-value=7.9e-06 Score=79.76 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=61.5
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc--cc--cccccccCCCCCCCC--
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR--GL--IGVMHDWCEPFDTYP-- 580 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er--Gl--ig~~~~~ce~~~~yp-- 580 (666)
..+.+.++.|. .|||+|||+|.++|.|++.+. .|+.++. +..+..+.++ +. +.+.+.-. +..+|
T Consensus 62 ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~-----~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~--~~g~~~~ 132 (224)
T d1vbfa_ 62 MLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVD-----KVVSVEINEKMYNYASKLLSYYNNIKLILGDG--TLGYEEE 132 (224)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG--GGCCGGG
T ss_pred HHHHhhhcccc--eEEEecCCCCHHHHHHHHHhc-----ccccccccHHHHHHHHHHHhcccccccccCch--hhcchhh
Confidence 34556777765 599999999999999998865 3444553 3455555443 11 33333321 23355
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
..||.|++.+...+. .+ ++-+.|||||.+|+-
T Consensus 133 ~pfD~Iiv~~a~~~i------p~---~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 133 KPYDRVVVWATAPTL------LC---KPYEQLKEGGIMILP 164 (224)
T ss_dssp CCEEEEEESSBBSSC------CH---HHHHTEEEEEEEEEE
T ss_pred hhHHHHHhhcchhhh------hH---HHHHhcCCCCEEEEE
Confidence 679999988654432 22 344679999999983
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.63 E-value=4.3e-05 Score=74.51 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=73.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA- 328 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d- 328 (666)
+++..+.+... +++|||||+++|.-+..++.. +|+++|.++.....|+..+. +.|... .+...+
T Consensus 49 ~~L~~L~~~~~-------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~-~~g~~~~i~~~~g~a 120 (227)
T d1susa1 49 QFLSMLLKLIN-------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK-KAGVDHKIDFREGPA 120 (227)
T ss_dssp HHHHHHHHHHT-------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH-HTTCGGGEEEEESCH
T ss_pred HHHHHHHHhcC-------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHH-HhccccceeeeehHH
Confidence 34555554443 479999999999877777632 89999999987777764443 455543 222222
Q ss_pred ccCCC------CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 329 TRRLP------YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 329 ~e~Lp------f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+.++ ...++||+|+.- ++...-...+..+.+.|+|||.+++..
T Consensus 121 ~~~L~~l~~~~~~~~~fD~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 121 LPVLDEMIKDEKNHGSYDFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp HHHHHHHHHCGGGTTCBSEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred HHHHHHHHhccccCCceeEEEec----cchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 22222 124689999843 343455688999999999999999973
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=9e-06 Score=79.23 Aligned_cols=98 Identities=16% Similarity=0.228 Sum_probs=57.9
Q ss_pred HHHhc--ccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc-------ccccccc
Q 005981 508 YVRAL--HWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL-------IGVMHDW 572 (666)
Q Consensus 508 Y~~~l--~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl-------ig~~~~~ 572 (666)
..+.+ .++.|. +|||+|||+|.+++.|++. |..- .|+.+|. +.+++.+.++ ++ +.+.+.-
T Consensus 66 ~le~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g---~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD 140 (224)
T d1i1na_ 66 ALELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 140 (224)
T ss_dssp HHHHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence 34445 345553 4999999999988888764 2110 2444553 3455544332 32 1222222
Q ss_pred CCCCCCCC--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 573 CEPFDTYP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 573 ce~~~~yp--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+ +..++ ..||.|++.+...+ +..++-+.|||||.+|+-
T Consensus 141 ~--~~~~~~~~~fD~I~~~~~~~~---------ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 141 G--RMGYAEEAPYDAIHVGAAAPV---------VPQALIDQLKPGGRLILP 180 (224)
T ss_dssp G--GGCCGGGCCEEEEEECSBBSS---------CCHHHHHTEEEEEEEEEE
T ss_pred c--ccccchhhhhhhhhhhcchhh---------cCHHHHhhcCCCcEEEEE
Confidence 1 22233 78999999865443 234567899999999984
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.59 E-value=3.6e-05 Score=76.58 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=75.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||||||+|+|+..++++|. . .|+.+|. +..++.+.+ .|+ +-+++.-+-.+.. ...||.|.+...
T Consensus 110 ~VlD~~aG~G~~~l~~a~~~~-~---~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p- 183 (260)
T d2frna1 110 LVVDMFAGIGHLSLPIAVYGK-A---KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 183 (260)
T ss_dssp EEEETTCTTTTTHHHHHHHTC-C---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred EEEECcceEcHHHHHHHHhCC-c---EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC-
Confidence 499999999999999998863 1 4555553 444444432 355 5666555433321 278998886522
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-------hhHHHHHHHHHHhcCcEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-------~~~~~~~~~i~~~l~W~~~~~ 644 (666)
+.-.+.|.+.-++|+|||++.+.+. .+..+.++++++...+++...
T Consensus 184 ------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 184 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred ------CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 1224677888899999999976421 234677888888888988654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=0.00014 Score=73.29 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=73.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc----CCCceEEeec-ccCCC-CCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFA-TRRLP-YPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r----g~~~~~~~~d-~e~Lp-f~d~sFDlV 342 (666)
.++++||-||.|.|..++.+.+. +|+.+|+++..+..++.-+.... .....+...| .+-+. ..+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 45689999999999999998876 79999999988776654332211 1222333333 22221 245689999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~ 388 (666)
+.- +....... ...+++.+++.|+|||.++............+..
T Consensus 159 i~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~ 207 (290)
T d1xj5a_ 159 IVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIED 207 (290)
T ss_dssp EEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHH
T ss_pred EEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHH
Confidence 953 32322111 1378999999999999999975433333333333
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.58 E-value=1.3e-05 Score=82.15 Aligned_cols=120 Identities=19% Similarity=0.203 Sum_probs=74.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccC----CCCCCCCCccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWC----EPFDTYPRTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~c----e~~~~yp~tyDliha 588 (666)
..|||++||+|+|+.+++..+. .|+.+|. +..++.+.+ .|+ +-+.+..+ +.+.....+||+|.+
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~~-----~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGFR-----EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHEE-----EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeeeccCCCCcHHHHHHHhcCC-----cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 5699999999999999986543 6677774 566655543 355 22222211 111222369999998
Q ss_pred ccc-cccCCC-----CCCHHHHHHHhhhcccCCeEEEEEe------ChhHHHHHHHHHHhcCcEEEEE
Q 005981 589 AGL-FSVESK-----RCNMSTIMLEMDRMLRPGGHVYIRD------SIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 589 ~~~-f~~~~~-----~c~~~~~l~E~dRiLRPgG~~ii~d------~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
+-= |+.... .....+++..+-++|||||.+++.. ..+..+.|.+.+..-+.++++.
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 632 221111 0112368888999999999999963 2334566666666666666544
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.57 E-value=0.00012 Score=73.12 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC----CceEEeecc-cCCCCCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA----PAMVAAFAT-RRLPYPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~----~~~~~~~d~-e~Lpf~d~sFDlVv 343 (666)
..+++||-||.|.|..++.+.+. +|+.+|+++..+..++.-+....+. ...+...|. +-+.-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45689999999999999998865 7999999998877666543322221 223333332 22222457899999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.-. ....... ...+++.+.+.|+|||.++....
T Consensus 154 ~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp ESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 542 2333211 24889999999999999998753
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.56 E-value=7e-05 Score=76.40 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-C----CCceEEeecc-cCCCCCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-G----APAMVAAFAT-RRLPYPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-g----~~~~~~~~d~-e~Lpf~d~sFDlV 342 (666)
..+++||.||.|.|..+..+.+. +|++||+++..++.++..+.... + ....+...|. +-+.-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45689999999999999888754 79999999988876665443221 1 1223333342 2122235789999
Q ss_pred EecccccccccC-------hHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRD-------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d-------~~~~L~el~RvLkPGG~lv~st 376 (666)
++-. ...+..+ ...+++.+.+.|+|||.+++..
T Consensus 156 i~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9532 2222211 1478999999999999998854
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00011 Score=74.10 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=68.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc----CCCceEEeec-ccCCCCCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFA-TRRLPYPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r----g~~~~~~~~d-~e~Lpf~d~sFDlVv 343 (666)
..+++||-||.|.|..+..+.+. +|+.+|+++..+..++.-+.... .....+...| .+-+.-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 46689999999999999999875 89999999988877765433211 1222333333 222222357899999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+- +....... ...+++.+.+.|+|||.+++...
T Consensus 157 ~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 157 TD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EE-CC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred Ec-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 64 32322111 12789999999999999998754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=6.2e-05 Score=72.95 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=81.6
Q ss_pred ceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhccc---ccccccc-CCCCCC-----CCCccce
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDW-CEPFDT-----YPRTYDL 585 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~-ce~~~~-----yp~tyDl 585 (666)
+-++||++|+|+|--+.+|++- +-.|++.-+.+.-.....+...+.|+ |.+.+.. .|.++. .+.+||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 4678999999999988888763 22233322222111222344444465 4333322 222221 2579999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---------------hHH-HHHHHHHHhcCcEEEEEeccCC
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------DVM-DELQEIGKAMGWHVTLRETAEG 649 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---------------~~~-~~~~~i~~~l~W~~~~~~~~~~ 649 (666)
|..++ ++-.....+.++-+.|||||.+|+.|-. +.+ +-.+.|.+.-+|...+.-..+
T Consensus 139 ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigd- 211 (219)
T d2avda1 139 AVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGD- 211 (219)
T ss_dssp EEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTT-
T ss_pred EEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCC-
Confidence 99872 3345678888889999999999996431 112 234556777889988776544
Q ss_pred CCCceEEEEEEe
Q 005981 650 PHASYRILTADK 661 (666)
Q Consensus 650 ~~~~e~~l~~~k 661 (666)
.+++|+|
T Consensus 212 -----Gl~ia~K 218 (219)
T d2avda1 212 -----GLTLAFK 218 (219)
T ss_dssp -----CEEEEEE
T ss_pred -----eeEEEEe
Confidence 4999988
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.46 E-value=6.9e-05 Score=73.47 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=64.8
Q ss_pred CceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhcc-ccccccccCCCCCCCCCccceEEeccccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRG-LIGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erG-lig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
.+++.|+|+|||.|.++++|+++ +..+.+... +..++.+.+.. +-.+-+|..++ .|. .|++...+++.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~vi~~~~~~~r~~~~~~d~~~~---~P~-ad~~~l~~vlh 150 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL-----PHVIEDAPSYPGVEHVGGDMFVS---IPK-ADAVFMKWICH 150 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-----TTTTTTCCCCTTEEEEECCTTTC---CCC-CSCEECSSSST
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEccc-----HHhhhhcccCCceEEeccccccc---CCC-cceEEEEEEee
Confidence 45889999999999999999988 454444443 33333333332 34455777544 453 35555566666
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+.+. +...+|.++.+.|+|||.++|-|
T Consensus 151 ~~~d~-~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 151 DWSDE-HCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp TSCHH-HHHHHHHHHHHHCCSSSCEEEEE
T ss_pred cCCHH-HHHHHHHHHHHhcCCCceEEEEE
Confidence 65432 23589999999999999999964
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.0013 Score=62.92 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=65.7
Q ss_pred CCeEEEECCCCchhHHHh----ccCCeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYL----LPRNVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L----~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
..++||+|+|.|.=+.-| .+.+++.+|....-+.-. .+.+.+-++.+. +....++.+. .+.+||+|+| +++
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL-~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~s-RA~- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFL-RQVQHELKLENIEPVQSRVEEFP-SEPPFDGVIS-RAF- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEEC-SCS-
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHH-HHHHHHcCCcceeeeccchhhhc-cccccceehh-hhh-
Confidence 368999999999433333 344899999987654332 244556677543 3333456654 3568999985 442
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....++.-+...+++||.+++.-
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 456788889999999999998875
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.38 E-value=0.00021 Score=66.87 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEe
Q 005981 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA---MVAA 326 (666)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~ 326 (666)
+..+...+.+...+.... ...+|||+.||||+++...+.+ .|+.||.+...+...+.+ .+..+... .+..
T Consensus 25 Pt~~~vrealFn~l~~~~---~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~N-i~~l~~~~~~~~~~~ 100 (183)
T d2ifta1 25 PTGDRVKETLFNWLMPYI---HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKN-LQTLKCSSEQAEVIN 100 (183)
T ss_dssp ---CHHHHHHHHHHHHHH---TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCTTTEEEEC
T ss_pred cCcHHHHHHHHHHhhhhc---ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhH-Hhhhccccccccccc
Confidence 344455556666664322 3368999999999999988877 899999999877655543 33333322 2222
Q ss_pred ec---ccCCCCCCCCeeEEEecccccccccChHHHHHHHH--HhccCCeEEEEEE
Q 005981 327 FA---TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAA 376 (666)
Q Consensus 327 ~d---~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~--RvLkPGG~lv~st 376 (666)
.+ ..........||+|++--- ... ......+..+. .+|+++|++++-.
T Consensus 101 ~d~~~~l~~~~~~~~fDlIFlDPP-Y~~-~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 101 QSSLDFLKQPQNQPHFDVVFLDPP-FHF-NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp SCHHHHTTSCCSSCCEEEEEECCC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccccccccccccCCcccEEEechh-Hhh-hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 22 1222334567999996533 222 22346666654 4799999998864
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00053 Score=70.27 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=73.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeeccc-CC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATR-RL 332 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e-~L 332 (666)
.+.+.+.+.+. .....+|||+-||+|.++..|++. +|+|+|.++..+..|+ +.++..++.+. +...+.+ .+
T Consensus 199 ~l~~~v~~~~~----~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~-~na~~n~i~n~~~~~~~~~~~~ 273 (358)
T d1uwva2 199 KMVARALEWLD----VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEEDV 273 (358)
T ss_dssp HHHHHHHHHHT----CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHhhc----cCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHH-HhHHhcccccceeeecchhhhh
Confidence 34444554443 234578999999999999999986 8999999999887776 45666776653 3333332 22
Q ss_pred C---CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 P---YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 p---f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .....||+|+..--.-. ....+..+.+ ++|.-.+++|..
T Consensus 274 ~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 274 TKQPWAKNGFDKVLLDPARAG----AAGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp SSSGGGTTCCSEEEECCCTTC----CHHHHHHHHH-HCCSEEEEEESC
T ss_pred hhhhhhhccCceEEeCCCCcc----HHHHHHHHHH-cCCCEEEEEeCC
Confidence 2 23467999985432111 2356666655 478888888853
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.34 E-value=0.00035 Score=70.98 Aligned_cols=104 Identities=12% Similarity=0.002 Sum_probs=65.5
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeec-ccCCCCCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFA-TRRLPYPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d-~e~Lpf~d~sFDlVv 343 (666)
..+++||-||.|.|..++.+.+. +|+.+|+++..+..++.-+....+ ....+...| .+-+.-..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 45689999999999999999875 799999999877655432211111 111233333 121222357899999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+-.. ...... ...+++.+.+.|+|||.++..+.
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 6432 222111 13778999999999999999854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.26 E-value=6.6e-05 Score=76.84 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=70.3
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccccc---cccccCCC----CCCCCCccceEEe
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGLIG---VMHDWCEP----FDTYPRTYDLLHA 588 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGlig---~~~~~ce~----~~~yp~tyDliha 588 (666)
+|||++||+|+|+.+++..|+. .|+.+|. +..++.+.+ .|+-. +.+.-+.. +..-..+||+|-+
T Consensus 148 ~VLDl~~g~G~~si~~a~~ga~----~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 148 RVLDVFTYTGGFAIHAAIAGAD----EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp EEEETTCTTTHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred eeecccCcccchhhhhhhcCCc----EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 5999999999999999988752 3555553 455555433 35522 22222111 1112378999998
Q ss_pred ccccccCCCC------CCHHHHHHHhhhcccCCeEEEEEeC------hhHHHHHHHHHHhcCcEEEE
Q 005981 589 AGLFSVESKR------CNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 589 ~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~ii~d~------~~~~~~~~~i~~~l~W~~~~ 643 (666)
+---...... ..+..++...-++|||||.+++... .+..+.|.+.+...+=+.++
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~ 290 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKM 290 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 6332111111 1234688888999999999999632 23445555555554434443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00087 Score=62.63 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=65.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~ 331 (666)
.+.+|.+...-+ .+..+||||||+.|.|+.++.+. .|+++|+.+.. .++ ..+...+...
T Consensus 9 KL~EI~~k~~l~---k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~------------~i~~~~~~~~d~~~ 73 (180)
T d1ej0a_ 9 KLDEIQQSDKLF---KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD------------PIVGVDFLQGDFRD 73 (180)
T ss_dssp HHHHHHHHHCCC---CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC------------CCTTEEEEESCTTS
T ss_pred HHHHHHHHhCcc---CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc------------ccCCceEeeccccc
Confidence 344555554432 35579999999999999988754 79999987631 111 1222222211
Q ss_pred C--------CCCCCCeeEEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEEEC
Q 005981 332 L--------PYPSQAFDLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 L--------pf~d~sFDlVv~s~~l~h~~~d~-----------~~~L~el~RvLkPGG~lv~st~ 377 (666)
. -...+.||+|+|-.+ .....+. ...+.-+.++|++||.|++-.+
T Consensus 74 ~~~~~~~~~~~~~~~~DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 74 ELVMKALLERVGDSKVQVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhhhhhhhccCcceeEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 1 023467999997543 3332221 1445567899999999999975
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.25 E-value=4.6e-05 Score=73.73 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=61.0
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCCCCChhHH----Hhccc--cccccccCCCCCCC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVI----YDRGL--IGVMHDWCEPFDTY 579 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~~~l~~~----~erGl--ig~~~~~ce~~~~y 579 (666)
...+.+.++.+. +|||+|||+|..+|.|+.. |-.|.++-+. +..++.+ .+.|+ +-+.+.. .+..+
T Consensus 69 ~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~----~~l~~~a~~~l~~~g~~nv~~~~gd--~~~g~ 140 (215)
T d1jg1a_ 69 IMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERI----PELVEFAKRNLERAGVKNVHVILGD--GSKGF 140 (215)
T ss_dssp HHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESC----HHHHHHHHHHHHHTTCCSEEEEESC--GGGCC
T ss_pred HHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEecc----HHHHHHHHHHHHHcCCceeEEEECc--cccCC
Confidence 345666777765 5999999999999988876 5334433332 2333333 33455 3333333 24445
Q ss_pred C--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 580 P--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 p--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
| ..||.|++.+..... ++.|++ -|+|||.+|+-
T Consensus 141 ~~~~pfD~Iiv~~a~~~i------p~~l~~---qL~~gGrLv~p 175 (215)
T d1jg1a_ 141 PPKAPYDVIIVTAGAPKI------PEPLIE---QLKIGGKLIIP 175 (215)
T ss_dssp GGGCCEEEEEECSBBSSC------CHHHHH---TEEEEEEEEEE
T ss_pred cccCcceeEEeecccccC------CHHHHH---hcCCCCEEEEE
Confidence 5 889999998555432 234443 59999999873
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.24 E-value=0.00021 Score=69.84 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=58.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..++.+.+.+.- .+..+|||||||+|.++..|++. +|+++|+++.++...+..+.. .....+...|+..+++
T Consensus 8 ~i~~~iv~~~~~----~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 8 HNIDKIMTNIRL----NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHTTCCC----CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCC
T ss_pred HHHHHHHHhcCC----CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccc
Confidence 456777777642 45689999999999999999876 899999998766544322211 1223555667777776
Q ss_pred CCCCeeEEEeccccccc
Q 005981 335 PSQAFDLIHCSRCRINW 351 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~ 351 (666)
+......|+++ .-.+.
T Consensus 82 ~~~~~~~vv~N-LPYnI 97 (235)
T d1qama_ 82 PKNQSYKIFGN-IPYNI 97 (235)
T ss_dssp CSSCCCEEEEE-CCGGG
T ss_pred cccccceeeee-ehhhh
Confidence 65444456544 32444
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.00026 Score=70.62 Aligned_cols=151 Identities=18% Similarity=0.285 Sum_probs=91.5
Q ss_pred hhhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc---cc
Q 005981 496 AESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IG 567 (666)
Q Consensus 496 ~d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig 567 (666)
.||+.+.+.+..+.... ....|+|+|||.|..+.++++.+ +. +|+.+| ++..+++|.+. |+ +.
T Consensus 93 peTE~lv~~~~~~~~~~-----~~~~vld~g~GsG~i~~~la~~~-~~---~v~a~Dis~~Al~~A~~Na~~~~~~~~~~ 163 (271)
T d1nv8a_ 93 PETEELVELALELIRKY-----GIKTVADIGTGSGAIGVSVAKFS-DA---IVFATDVSSKAVEIARKNAERHGVSDRFF 163 (271)
T ss_dssp TTHHHHHHHHHHHHHHH-----TCCEEEEESCTTSHHHHHHHHHS-SC---EEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred hhhhhhhhhhhhhhccc-----cccEEEEeeeeeehhhhhhhhcc-cc---eeeechhhhhHHHHHHHHHHHcCCCceeE
Confidence 45566666555554332 23469999999999888887764 21 455565 34556555542 44 44
Q ss_pred ccc-ccCCCCCCCCCccceEEeccc-------cc----cC------CCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHH
Q 005981 568 VMH-DWCEPFDTYPRTYDLLHAAGL-------FS----VE------SKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDE 629 (666)
Q Consensus 568 ~~~-~~ce~~~~yp~tyDliha~~~-------f~----~~------~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~ 629 (666)
+.+ +|.+.+......||+|-|+== .. +. +..-.+..+-.=+.++|+|||++++--..+..++
T Consensus 164 i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~ 243 (271)
T d1nv8a_ 164 VRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEE 243 (271)
T ss_dssp EEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHH
T ss_pred EeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHH
Confidence 443 454444333368999998621 10 00 0001112211114689999999999765666778
Q ss_pred HHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 630 LQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 630 ~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
|+++++...| .+|. .+.+++++++|+
T Consensus 244 v~~l~~~~g~---~kDl----~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 244 LKKIVSDTVF---LKDS----AGKYRFLLLNRR 269 (271)
T ss_dssp HTTTSTTCEE---EECT----TSSEEEEEEECC
T ss_pred HHHHHHhCCE---Eecc----CCCcEEEEEEEc
Confidence 8888888776 2332 357899999996
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=0.001 Score=65.05 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=98.4
Q ss_pred hhHhHHHHHHHHHHhccc-CCCceeeEeeccccchHHHHHHhh-CCCceEEEEeeccCC----CCChhH-HHhccc--cc
Q 005981 497 ESKYWNEIIESYVRALHW-KKMKLRNVLDMRAGFGGFAAALIE-QKFDCWVMNVVPVSG----FNTLPV-IYDRGL--IG 567 (666)
Q Consensus 497 d~~~w~~~v~~Y~~~l~~-~~~~iRnvlD~g~G~Ggfaa~L~~-~~~~vwvmnv~~~~~----~~~l~~-~~erGl--ig 567 (666)
..+.|.+++-+=...+.. ......+++|+|+|-|-=|--|+= .+ + + +|+-+|+ -.-|+. +.+=|| +-
T Consensus 48 ~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p-~-~--~v~Lves~~KK~~FL~~v~~~L~L~n~~ 123 (239)
T d1xdza_ 48 KKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFP-H-L--HVTIVDSLNKRITFLEKLSEALQLENTT 123 (239)
T ss_dssp HHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCT-T-C--EEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCC-C-c--cceeecchHHHHHHHHHHHHHhCCCCcE
Confidence 345677776654444442 233456899999998865554442 22 1 1 4555554 234443 344487 66
Q ss_pred cccccCCCCCC---CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE---eChhHHHHHHHHHHhcCcEE
Q 005981 568 VMHDWCEPFDT---YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---DSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 568 ~~~~~ce~~~~---yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~---d~~~~~~~~~~i~~~l~W~~ 641 (666)
++|+..|.+.. +...||+|-|.. -..+..++.-....|+|||.+++- +..+.++..++.++.+.++.
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~sRA-------va~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTARA-------VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEEEC-------CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEeehhhhccccccccccceEEEEhh-------hhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence 77888887643 346899999873 356678888889999999999995 55566777888888999886
Q ss_pred EEEeccC--CCCCceEEEEEEeC
Q 005981 642 TLRETAE--GPHASYRILTADKR 662 (666)
Q Consensus 642 ~~~~~~~--~~~~~e~~l~~~k~ 662 (666)
.....-. .....-.|++.+|.
T Consensus 197 ~~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 197 ENIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEeCCCCCCCEEEEEEEEC
Confidence 5332111 11233467777764
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.10 E-value=0.0036 Score=60.97 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCchhHHH----hccCCeEEEeCCcchHHHHHHHHHHHcCCCceEE-eecccCCCC---CCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAY----LLPRNVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLPY---PSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~----L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d~e~Lpf---~d~sFDlVv~s 345 (666)
...+++|||+|.|.=+.- +.+.+++-+|-+..-+.-. .+...+-++.+... ...++.+.. ..++||+|+|-
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL-~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFL-EKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHH-HHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHH-HHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 457899999999943333 3344899999887643222 23445557765433 333444432 23689999964
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~ 388 (666)
.+ .....++.-+...+++||.+++.- +.....|+.+
T Consensus 149 Av-----a~l~~ll~~~~~~l~~~g~~i~~K--G~~~~~El~~ 184 (239)
T d1xdza_ 149 AV-----ARLSVLSELCLPLVKKNGLFVALK--AASAEEELNA 184 (239)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEE--CC-CHHHHHH
T ss_pred hh-----hCHHHHHHHHhhhcccCCEEEEEC--CCChHHHHHH
Confidence 43 567889999999999999998875 3344455544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.09 E-value=0.00077 Score=63.93 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=74.8
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCCCCCccce
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDL 585 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~yp~tyDl 585 (666)
.+.-.|. +|||+|||+|+++.+++.+|. ..|+.+|. +.++..+.+. |+ ..++. .....++..||+
T Consensus 42 ~~dl~g~--~vLDlg~GtG~l~i~a~~~g~----~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~---~d~~~~~~~fD~ 112 (201)
T d1wy7a1 42 LGDIEGK--VVADLGAGTGVLSYGALLLGA----KEVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDI 112 (201)
T ss_dssp TTSSTTC--EEEEETCTTCHHHHHHHHTTC----SEEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSE
T ss_pred cCCCCCC--EEEECcCcchHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCCceEEE---CchhhhCCcCcE
Confidence 3433453 499999999999998888875 14566663 4666666553 22 22222 122345688999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE--EeChhHHHHHHHHHHhcCcEEEEE
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI--RDSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii--~d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
|-++-=|.......+.+.+. +.+.+++.++. ....+....++.+++...|.+...
T Consensus 113 Vi~nPP~~~~~~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 113 VIMNPPFGSQRKHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp EEECCCCSSSSTTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEcCccccccccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence 99987676555445544432 33444554444 345556677888889989987553
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.08 E-value=1.9e-05 Score=71.95 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=59.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCC-CCCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFD-TYPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~-~yp~tyDliha~~~ 591 (666)
+|||++||+|++|...+.+|+. +|+-+|. +.+++.+.+. |+ +.+++.-+..+. .....||+|.++-=
T Consensus 17 ~vlDl~~GtG~~~iea~~rga~----~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 17 RVLDLFAGSGGLAIEAVSRGMS----AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp EEEEETCTTCHHHHHHHHTTCC----EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred eEEEcCCccCHHHHHHHHhCcc----eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5999999999999888888862 6777775 4444444332 44 455554444432 22388999998632
Q ss_pred cccCCCCCCHHHHHHHh--hhcccCCeEEEEEe
Q 005981 592 FSVESKRCNMSTIMLEM--DRMLRPGGHVYIRD 622 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~--dRiLRPgG~~ii~d 622 (666)
|... ....+|..+ .++|+|||.+|+..
T Consensus 93 y~~~----~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YAKE----TIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SHHH----HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccc----hHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 2211 112333333 37999999999953
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.04 E-value=0.00029 Score=71.83 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=70.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc----cccccccCCC-CC---CCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL----IGVMHDWCEP-FD---TYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl----ig~~~~~ce~-~~---~yp~tyDli 586 (666)
+.|||+.||+|||+.+++..|+. .|+.+|. +..+..+.+ .|+ +-++..-+.. +. .-.+.||+|
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~----~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAM----ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBS----EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCc----eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 35999999999999988877652 3444553 445554443 244 2222222211 11 113689999
Q ss_pred Eecc-ccccCCC-CC----CHHHHHHHhhhcccCCeEEEEE------eChhHHHHHHHHHHhcCcEEEEE
Q 005981 587 HAAG-LFSVESK-RC----NMSTIMLEMDRMLRPGGHVYIR------DSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 587 ha~~-~f~~~~~-~c----~~~~~l~E~dRiLRPgG~~ii~------d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
-++= .|+..+. .- +..+++...-++|+|||.++++ +..+....|.+.+.+-.+.....
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 9751 1222111 11 2346788888999999999996 22334555666666656665544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00025 Score=66.45 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=74.5
Q ss_pred eeEeeccccchHHHHHHhhC-C--CceEEEEeeccCCCCChhHHHhccccccccccCCCCCC-CCCccceEEeccccccC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT-YPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~-yp~tyDliha~~~f~~~ 595 (666)
.+|||+||+-|||.-++.++ + ..|+..-..|.+.-+.. ..-.|-++.....-+.... .-..+|+|-|++.+...
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~--~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~s 101 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGV--DFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS 101 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTE--EEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCc--eEeecccccchhhhhhhhhccCcceeEEEecccchhc
Confidence 46999999999999998875 1 12333333333211111 0011111111000000001 12579999999888766
Q ss_pred CCCCC--------HHHHHHHhhhcccCCeEEEEE--eChhHHHHHHHHHHhcCcEEEEEecc-CCCCCceEEEEEEe
Q 005981 596 SKRCN--------MSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEIGKAMGWHVTLRETA-EGPHASYRILTADK 661 (666)
Q Consensus 596 ~~~c~--------~~~~l~E~dRiLRPgG~~ii~--d~~~~~~~~~~i~~~l~W~~~~~~~~-~~~~~~e~~l~~~k 661 (666)
+++-. ....|.=+.++|||||.||+. +..+. ..+...++.+=-++.+...+ .-+...|..|||+.
T Consensus 102 g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~-~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF-DEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH-HHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccH-HHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 54311 113333445999999999996 43332 23444444433344444332 33467899999985
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.01 E-value=0.0001 Score=72.57 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=59.1
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~ 335 (666)
.++.+.+.+.. ....+|||||||+|.++..|++. +|+++|+++.++..++..+.. .....+...|+.++.++
T Consensus 17 ii~kIv~~~~~----~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~~~~ 90 (245)
T d1yuba_ 17 VLNQIIKQLNL----KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQFQFP 90 (245)
T ss_dssp THHHHHHHCCC----CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTTTCC
T ss_pred HHHHHHHhcCC----CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--ccchhhhhhhhhccccc
Confidence 35667776642 34578999999999999999875 899999999876433211110 11234555577778888
Q ss_pred CCCeeEEEeccccccc
Q 005981 336 SQAFDLIHCSRCRINW 351 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~ 351 (666)
...++.|+++. -.++
T Consensus 91 ~~~~~~vv~NL-PY~I 105 (245)
T d1yuba_ 91 NKQRYKIVGNI-PYHL 105 (245)
T ss_dssp CSSEEEEEEEC-CSSS
T ss_pred cceeeeEeeee-ehhh
Confidence 77788787553 3565
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.99 E-value=0.0002 Score=70.26 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=66.4
Q ss_pred CCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEecccc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~~f 592 (666)
...+++|+|+|||.|.++.+++++ +..+.|...-.+ ++.+-...-+.+. ||- |..-| .+|++....++
T Consensus 78 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-----i~~~~~~~rv~~~~gD~---f~~~p-~aD~~~l~~vL 148 (244)
T d1fp2a2 78 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV-----VENLSGSNNLTYVGGDM---FTSIP-NADAVLLKYIL 148 (244)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH-----HTTCCCBTTEEEEECCT---TTCCC-CCSEEEEESCG
T ss_pred ccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHH-----HHhCcccCceEEEecCc---ccCCC-CCcEEEEEeec
Confidence 456788999999999999999888 454555554322 2211112224443 554 33334 67999999999
Q ss_pred ccCCCCCCHHHHHHHhhhcccCC---eEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPG---GHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPg---G~~ii~d 622 (666)
.++.+. ....+|..+.+.|+|| |.++|-|
T Consensus 149 Hdw~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 149 HNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp GGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred ccCChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 988753 2258999999999999 7777753
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.89 E-value=0.00051 Score=65.24 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=65.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
++|||+|||+|.++.+++..|.. +|+.+|. +.+++.+.+.-- +.+...- +...++.||+|-++=-|.....
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~----~V~~vDid~~a~~~ar~N~~~~~~~~~D---~~~l~~~fD~Vi~NPPfg~~~~ 122 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE----SVTAFDIDPDAIETAKRNCGGVNFMVAD---VSEISGKYDTWIMNPPFGSVVK 122 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS----EEEEEESCHHHHHHHHHHCTTSEEEECC---GGGCCCCEEEEEECCCC-----
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC----cccccccCHHHHHHHHHccccccEEEEe---hhhcCCcceEEEeCcccchhhh
Confidence 35999999999999888888752 5667764 577777765422 4444333 3446789999998866643322
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~ 641 (666)
..++ .+ ++..+.+++.++........+-+++.++.. +++
T Consensus 123 ~~D~--~f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~~~-~~~ 161 (197)
T d1ne2a_ 123 HSDR--AF--IDKAFETSMWIYSIGNAKARDFLRREFSAR-GDV 161 (197)
T ss_dssp --CH--HH--HHHHHHHEEEEEEEEEGGGHHHHHHHHHHH-EEE
T ss_pred hchH--HH--HHHHHhcCCeEEEehhhhHHHHHHHHhhcC-ceE
Confidence 2232 22 344566676665555555555666655543 444
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.87 E-value=0.00032 Score=66.21 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=35.2
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+.||+|-|.+||...... ....++..+.+.|+|||++++-..
T Consensus 131 ~~fDvI~CRNVLiYf~~~-~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 131 GPFDAIFCRNVMIYFDKT-TQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp CCEEEEEECSSGGGSCHH-HHHHHHHHHGGGEEEEEEEEECTT
T ss_pred CCccEEEeehhHHhcCHH-HHHHHHHHHHHHhCCCcEEEEecC
Confidence 789999999998876542 336899999999999999999644
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=96.80 E-value=0.00011 Score=68.31 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=56.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc-cccccccCCCCCC---CC-CccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL-IGVMHDWCEPFDT---YP-RTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl-ig~~~~~ce~~~~---yp-~tyDliha~~ 590 (666)
+|||++||+|+++.+.+++|+. |+-+|. +.+++.+.+ -|+ ..+....++.|.. .. ..||+|-++=
T Consensus 44 ~vLDl~~G~G~~~i~a~~~ga~-----vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASEGWE-----AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCE-----EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEeccccchhhhhhhhccch-----hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 5999999999999999999983 444553 455544432 244 2223223222211 12 6899998762
Q ss_pred ccccCCCCCCHHHHHHHh--hhcccCCeEEEEEeC
Q 005981 591 LFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDS 623 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~--dRiLRPgG~~ii~d~ 623 (666)
=|.. ++..++.++ ..+|+|||.+|+..+
T Consensus 119 PY~~-----~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 119 PYAM-----DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CTTS-----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccc-----CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 2221 233444444 368999999999644
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.78 E-value=0.00014 Score=70.45 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=55.1
Q ss_pred cCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCC-CCChhHHHhc---------cc--cccccccCCCCC
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSG-FNTLPVIYDR---------GL--IGVMHDWCEPFD 577 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~-~~~l~~~~er---------Gl--ig~~~~~ce~~~ 577 (666)
++.+. +|||+|||+|-++|.|++. |+. -.-.|+.++. +..+..+.++ |+ +-+.+..+ ..
T Consensus 78 l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~-~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~--~~ 152 (223)
T d1r18a_ 78 LKPGA--RILDVGSGSGYLTACFYRYIKAKGVD-ADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG--RK 152 (223)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHHHSCCC-TTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG--GG
T ss_pred cCCCC--eEEEecCCCCHHHHHHHHHhhhccCC-cccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc--cc
Confidence 44443 5999999999999888764 210 0002344443 3444444332 22 33344333 23
Q ss_pred CCC--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 578 TYP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 578 ~yp--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+| ..||.|++.+..... -..+-+.|+|||.+|+-
T Consensus 153 ~~~~~~~fD~Iiv~~a~~~~---------p~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 153 GYPPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVP 189 (223)
T ss_dssp CCGGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred ccccccceeeEEEEeechhc---------hHHHHHhcCCCcEEEEE
Confidence 344 789999998654322 22345789999999984
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.72 E-value=0.0026 Score=66.83 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=74.9
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----------------CCeEEEeCCcchHHHHHHHHHHHc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------------RNVITMSIAPKDVHENQIQFALER 318 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----------------~~V~gvDiS~~~l~~a~~~~a~~r 318 (666)
+.+++.|.+++.. ....+|||..||+|.|.....+ ..+.|+|+++.....++..... +
T Consensus 148 ~~Iv~~mv~ll~~----~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~ 222 (425)
T d2okca1 148 RPLIQAMVDCINP----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-H 222 (425)
T ss_dssp HHHHHHHHHHHCC----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-T
T ss_pred hhhhHhhheeccC----cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-c
Confidence 4566777776652 3457899999999988765532 2589999999877766655544 2
Q ss_pred CCCc---eEEeecccCCCCCCCCeeEEEecccccccc---------------cCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 319 GAPA---MVAAFATRRLPYPSQAFDLIHCSRCRINWT---------------RDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 319 g~~~---~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~---------------~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
+... .+...+.... .+...||+|+++--+-.-. .+. ..++..+.+.|++||.+++..+
T Consensus 223 g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 223 GIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp TCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 3221 1222232221 3457899999875431110 011 2588899999999999888864
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.70 E-value=0.00018 Score=69.29 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=67.6
Q ss_pred ceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhccc---cccccccC-CCCCC----CC-Cccce
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWC-EPFDT----YP-RTYDL 585 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~c-e~~~~----yp-~tyDl 585 (666)
+-++||++|||+|..+.+|++. +..|+++-+.+-........+...|+ |.+.+..+ |.++. ++ .+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 4568999999999999998763 33344433322111223333344576 54544332 22232 22 68999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----hhHHHHHHHHHHhcCcEEEE
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----~~~~~~~~~i~~~l~W~~~~ 643 (666)
|+.++- +........+.|.-|+|||||.+|+.|- .+.++.|+ +.=.|....
T Consensus 136 ifiD~~----~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr---~~~~~~~~~ 191 (214)
T d2cl5a1 136 VFLDHW----KDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTH 191 (214)
T ss_dssp EEECSC----GGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHH---HCTTEEEEE
T ss_pred eeeccc----ccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHh---ccCceeehh
Confidence 998732 2211112457788899999998776542 23444443 345666554
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.0041 Score=61.89 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=67.5
Q ss_pred CCCCeEEEECCCCchhHHHhcc---C-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--CCCCCeeEEEe--
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP---R-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHC-- 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~---~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--f~d~sFDlVv~-- 344 (666)
..+.+|||+.+|.|.=+..|++ . .|+++|+++.-+...+ +..+..|........+..... ...+.||.|++
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 3457999999999965555443 2 7999999998776655 345556666544443211111 23468999994
Q ss_pred --cccc-c--------ccccC--------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 --SRCR-I--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 --s~~l-~--------h~~~d--------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+... + .|.+. ...+|..+.+.|||||+++.+|-
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 3221 1 11111 12678888999999999999984
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.0027 Score=59.25 Aligned_cols=109 Identities=21% Similarity=0.183 Sum_probs=70.3
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC--
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-- 333 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp-- 333 (666)
++++.+.+.. .++..++|..+|.|..+..+++. +|+|+|..+.++..+. ...... .+.......+.
T Consensus 7 l~Evl~~l~~----~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~-----~~~~~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 7 YQEALDLLAV----RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAK-----GLHLPGLTVVQGNFRHLKRH 77 (182)
T ss_dssp HHHHHHHHTC----CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-----HTCCTTEEEEESCGGGHHHH
T ss_pred HHHHHHhcCC----CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHh-----hccccceeEeehHHHHHHHH
Confidence 4555555542 45579999999999999999887 8999999997764443 222222 22222211111
Q ss_pred ---CCCCCeeEEEecccc--cccccC-------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 ---YPSQAFDLIHCSRCR--INWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 ---f~d~sFDlVv~s~~l--~h~~~d-------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+..+.+|.|+.-..+ .|+ ++ ....|.....+|++||.+++.++
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~ql-d~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHL-DDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHH-HCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHcCCCccCEEEEEccCCHHHh-hcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 334679999863221 222 22 22567888999999999999864
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.37 E-value=0.0039 Score=60.83 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e 330 (666)
..+.++.+.. .+ .+..+|+|+|||.|.++.+++.+ .|.|+++--. +++.-. .....+... .....++.
T Consensus 53 ~Kl~~~~~~~-~~---~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d-~~e~P~-~~~~~~~ni~~~~~~~dv~ 126 (257)
T d2p41a1 53 AKLRWFVERN-LV---TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPI-PMSTYGWNLVRLQSGVDVF 126 (257)
T ss_dssp HHHHHHHHTT-SS---CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSCCCC-CCCSTTGGGEEEECSCCTT
T ss_pred HHHHHHHHhc-Cc---cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCc-cccCCc-cccccccccccchhhhhHH
Confidence 3344555443 22 33468999999999999999866 5667766321 110000 000001011 11111222
Q ss_pred CCCCCCCCeeEEEecccccccccChH-------HHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDG-------ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~-------~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+....|+|+|-.. .+ ..+.. .+|.-+.+.|+|||.|++-.+
T Consensus 127 ~--l~~~~~D~vlcDm~-es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 127 F--IPPERCDTLLCDIG-ES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp T--SCCCCCSEEEECCC-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred h--cCCCcCCEEEeeCC-CC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 2 34678999998643 22 22221 556667799999999999865
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.35 E-value=0.0047 Score=62.37 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCCCeEEEECCCCchhHHHhc---cC--CeEEEeCCcchHHHHHHHHHHHcCCCceEE-eecccCCCCCCCCeeEEEe--
Q 005981 273 HHIRVVMDAGCGVASFGAYLL---PR--NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLPYPSQAFDLIHC-- 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~---~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d~e~Lpf~d~sFDlVv~-- 344 (666)
.++.+|||+.||.|.=+.+++ .. .++++|.++.-+.....+ ....+..+... ..|...++.....||.|++
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~-~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLN-LSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH-HHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHH-HHHHHhhccccccccccccccccccccEEEEcc
Confidence 345799999999996444443 22 699999998776655433 33445554333 3344445555678999995
Q ss_pred --cccc-c------ccccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 --SRCR-I------NWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 --s~~l-~------h~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+... + .|... ...+|..+.+.|||||+++.+|-
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 2211 1 11101 11577888999999999999984
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.26 E-value=0.00071 Score=68.54 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=69.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccCCCCCC----CCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWCEPFDT----YPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~ce~~~~----yp~tyDli 586 (666)
++|||+.||+|+|+.+++..|+ .|+.||. ...++.+.+. |+ +.+.++-+-.+.. .-+.||+|
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA-----~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGA-----EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CeEEEecCCCcHHHHHHHhCCC-----eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 4699999999999999999997 5666774 5666666542 44 2222222111110 13789999
Q ss_pred Eeccc-cccCCCC------CCHHHHHHHhhhcccCCeEEEEE-------eChhHHHHHHHHHHhcCcEEE
Q 005981 587 HAAGL-FSVESKR------CNMSTIMLEMDRMLRPGGHVYIR-------DSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 587 ha~~~-f~~~~~~------c~~~~~l~E~dRiLRPgG~~ii~-------d~~~~~~~~~~i~~~l~W~~~ 642 (666)
-++== |....+. -.+..++..+-++|+|||.+++. +.....+.+.+.+......+.
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 87421 2221110 11234555677899999976653 222234455666666667664
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0094 Score=56.62 Aligned_cols=129 Identities=13% Similarity=0.124 Sum_probs=81.1
Q ss_pred hhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhh--CCCceEEEEeeccCC----CCCh-hHHHhccc--cc
Q 005981 497 ESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSG----FNTL-PVIYDRGL--IG 567 (666)
Q Consensus 497 d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~--~~~~vwvmnv~~~~~----~~~l-~~~~erGl--ig 567 (666)
..+.|.+++-+=...+..-.+. +|+|+|+|-|-=|--|+- ..+ +|+-+|+ -.-| +++.+=|| +-
T Consensus 46 ~~~~~~rHi~DSl~~~~~~~~~--~ilDiGsGaG~PGi~laI~~p~~-----~~~Lves~~KK~~FL~~~~~~L~L~nv~ 118 (207)
T d1jsxa_ 46 PNEMLVRHILDSIVVAPYLQGE--RFIDVGTGPGLPGIPLSIVRPEA-----HFTLLDSLGKRVRFLRQVQHELKLENIE 118 (207)
T ss_dssp --CHHHHHHHHHHHHGGGCCSS--EEEEETCTTTTTHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHHHTTCSSEE
T ss_pred HHHHHHHHhcchHhhhhhhcCC--ceeeeeccCCceeeehhhhcccc-----eEEEEecchHHHHHHHHHHHHcCCccee
Confidence 3356766665433444432222 699999998865544442 223 4555554 1333 44555577 67
Q ss_pred cccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEE
Q 005981 568 VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 568 ~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~ 642 (666)
++|+..|.+.. ...||+|-|.. -+.+..++.-..+.|++||.+++--.....++++.+- -.|+..
T Consensus 119 v~~~R~E~~~~-~~~fD~V~sRA-------~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~~ 183 (207)
T d1jsxa_ 119 PVQSRVEEFPS-EPPFDGVISRA-------FASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQVE 183 (207)
T ss_dssp EEECCTTTSCC-CSCEEEEECSC-------SSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEEE
T ss_pred eeccchhhhcc-ccccceehhhh-------hcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEEE
Confidence 78888887642 35899998752 3567788888899999999999976555555655543 477654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.23 E-value=0.003 Score=61.01 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=77.5
Q ss_pred ceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhccc---cccccccCCC-CCC------CCCccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEP-FDT------YPRTYD 584 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~ce~-~~~------yp~tyD 584 (666)
+.++||.+|+++|--+.+|++- +..|+++-..|-...-..+.+.+.|+ |-+.++-+.. ++. ...+||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 5678999999999877777642 22233332222111222234444566 4444333221 222 246899
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh--------------hH----HHHHHH----HHHhcCcEEE
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------DV----MDELQE----IGKAMGWHVT 642 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~--------------~~----~~~~~~----i~~~l~W~~~ 642 (666)
+|-.++ +.-.....+..+-++|||||.+|+.|-. .. .+.+++ +.+.=+|.+.
T Consensus 139 ~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~ 212 (227)
T d1susa1 139 FIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEIC 212 (227)
T ss_dssp EEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCE
T ss_pred EEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 998772 2334567888888999999999996331 11 122333 3334467877
Q ss_pred EEeccCCCCCceEEEEEEe
Q 005981 643 LRETAEGPHASYRILTADK 661 (666)
Q Consensus 643 ~~~~~~~~~~~e~~l~~~k 661 (666)
+.-..+| +++|+|
T Consensus 213 llPigDG------l~i~~K 225 (227)
T d1susa1 213 MLPVGDG------ITICRR 225 (227)
T ss_dssp EECSTTC------EEEECB
T ss_pred EeecCCe------eEEEEE
Confidence 7766554 899988
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0012 Score=62.17 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=77.0
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-----cccccccCCCCC----CC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-----IGVMHDWCEPFD----TY 579 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-----ig~~~~~ce~~~----~y 579 (666)
..+.+..+. +++|++||+||++.+++++--+ ..|+.+|. +.+++.+.+|.- +-.+|++...+. .+
T Consensus 17 ~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~---~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 17 EFLKPEDEK--IILDCTVGEGGHSRAILEHCPG---CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHCCCTTC--EEEETTCTTSHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HhhCCCCCC--EEEEecCCCcHHHHHHHhcCCC---CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHc
Confidence 344555565 4999999999999999886101 25777774 688888877632 556666633322 23
Q ss_pred C-CccceEEeccccccC----CCC--CCHHHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHh
Q 005981 580 P-RTYDLLHAAGLFSVE----SKR--CNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKA 636 (666)
Q Consensus 580 p-~tyDliha~~~f~~~----~~~--c~~~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~ 636 (666)
. ..+|-|-.+-=.|.. .+| ..+...|.++-++|+|||.+++-.-.. ..+.++.+++.
T Consensus 92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 3 678877765222211 011 223588999999999999998764333 23456666554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.84 E-value=0.0074 Score=59.96 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=53.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLP 333 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~Lp 333 (666)
.+++.+.+.+.. .....|||||+|.|.++..|+++ +|+++++++.++...+..+...... ...+...|+....
T Consensus 8 ~i~~kIv~~~~~----~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 8 LIINSIIDKAAL----RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHTCC----CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhCC----CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 456677666642 34578999999999999999875 9999999998776554333221111 1234444554444
Q ss_pred CCCCCeeEEEec
Q 005981 334 YPSQAFDLIHCS 345 (666)
Q Consensus 334 f~d~sFDlVv~s 345 (666)
++ .++.|+++
T Consensus 84 ~~--~~~~vV~N 93 (278)
T d1zq9a1 84 LP--FFDTCVAN 93 (278)
T ss_dssp CC--CCSEEEEE
T ss_pred hh--hhhhhhcc
Confidence 33 35677755
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=95.79 E-value=0.006 Score=61.56 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=80.6
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc------cc-----ccccc-ccCCCCCCCCCcc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR------GL-----IGVMH-DWCEPFDTYPRTY 583 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er------Gl-----ig~~~-~~ce~~~~yp~ty 583 (666)
.+-++||.+|+|.|+.++++++.+ ++ .+|+-++- +..++++.+. |. +.+.+ |.-+-+...++.|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~-~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHP-TV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCcceEEEeCCCchHHHHHHHhcC-Cc--ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 457889999999999999998773 11 23333332 3445555332 11 22332 2222122346899
Q ss_pred ceEEeccc--cccCCCCCCH--HHHHHHhhhcccCCeEEEEE------eChhHHHHHHHHHHhcCcEEEEEeccCCC--C
Q 005981 584 DLLHAAGL--FSVESKRCNM--STIMLEMDRMLRPGGHVYIR------DSIDVMDELQEIGKAMGWHVTLRETAEGP--H 651 (666)
Q Consensus 584 Dliha~~~--f~~~~~~c~~--~~~l~E~dRiLRPgG~~ii~------d~~~~~~~~~~i~~~l~W~~~~~~~~~~~--~ 651 (666)
|+|..+.. +........+ .+.+..+.|.|+|||.++.. ...+....+.+.+++.=..+.....- -| .
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~-vPs~~ 231 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNH-IPGFF 231 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEE-EGGGT
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEee-eCCcC
Confidence 99996521 2111111111 47889999999999999984 23345666766666655555543221 01 1
Q ss_pred CceEEEEEEeC
Q 005981 652 ASYRILTADKR 662 (666)
Q Consensus 652 ~~e~~l~~~k~ 662 (666)
....+++|.|.
T Consensus 232 ~~w~f~~aS~~ 242 (312)
T d1uira_ 232 LNFGFLLASDA 242 (312)
T ss_dssp EEEEEEEEESS
T ss_pred CCCEeEEEeCC
Confidence 23567888875
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0035 Score=58.26 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=56.3
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHH---hc-cc--cccccccCCCC-CCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIY---DR-GL--IGVMHDWCEPF-DTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~---er-Gl--ig~~~~~ce~~-~~yp~tyDliha~~~f 592 (666)
+|||+.||+|.+|-..+.+|+. .|+-+|. ...++.+. ++ ++ +-++...+..+ ......||+|.++==|
T Consensus 46 ~vLDlfaGsG~~giealsrGa~----~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAA----GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS----EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred hhhhhhccccceeeeEEecCcc----eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 4999999999999999999873 4555663 33443333 32 22 22222211111 1223789999998332
Q ss_pred ccCCCCCCHHHHHHHhh--hcccCCeEEEEE
Q 005981 593 SVESKRCNMSTIMLEMD--RMLRPGGHVYIR 621 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~d--RiLRPgG~~ii~ 621 (666)
. ....+.++.-+. .+|+|+|.+|+-
T Consensus 122 ~----~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 122 R----RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp S----TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred c----cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2 223455544443 589999999994
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0054 Score=60.09 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=38.8
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHH
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHE 309 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~ 309 (666)
..++.|.+.+.. .....|||||||+|.++..|++. +|+++|+++.++..
T Consensus 8 ~~~~~Iv~~~~~----~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~ 58 (252)
T d1qyra_ 8 FVIDSIVSAINP----QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAAR 58 (252)
T ss_dssp HHHHHHHHHHCC----CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHH
T ss_pred HHHHHHHHhcCC----CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHH
Confidence 456677666642 34578999999999999999987 99999999876543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0061 Score=65.70 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=71.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc----------------------CCeEEEeCCcchHHHHHHH
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----------------------RNVITMSIAPKDVHENQIQ 313 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~----------------------~~V~gvDiS~~~l~~a~~~ 313 (666)
+.+++.|.+++.. ....+|+|-.||+|.|.....+ ..++|+|+.+.+...++..
T Consensus 150 ~~Iv~~mv~ll~~----~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n 225 (524)
T d2ar0a1 150 RPLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225 (524)
T ss_dssp HHHHHHHHHHHCC----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred cchhHhhhhcccC----ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 4566666666652 3456899999999988754322 1589999999877666554
Q ss_pred HHHHcCCCce------EEeecccCC-CCCCCCeeEEEecccccc-cc-----------cChH-HHHHHHHHhccCCeEEE
Q 005981 314 FALERGAPAM------VAAFATRRL-PYPSQAFDLIHCSRCRIN-WT-----------RDDG-ILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 314 ~a~~rg~~~~------~~~~d~e~L-pf~d~sFDlVv~s~~l~h-~~-----------~d~~-~~L~el~RvLkPGG~lv 373 (666)
... ++.... +...+.... ......||+|+++--+-. +. .+.. .++..+.+.|++||.++
T Consensus 226 l~l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 226 CLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp HHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHh-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 433 232211 111110000 123467999998754311 10 1112 58889999999999998
Q ss_pred EEEC
Q 005981 374 WAAQ 377 (666)
Q Consensus 374 ~st~ 377 (666)
+..+
T Consensus 305 iIlP 308 (524)
T d2ar0a1 305 VVVP 308 (524)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.64 E-value=0.007 Score=58.56 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred CCeEEEECCCCchhHHHhc--------cCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC----CCCCCeeEE
Q 005981 275 IRVVMDAGCGVASFGAYLL--------PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP----YPSQAFDLI 342 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~--------~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp----f~d~sFDlV 342 (666)
+.+|||||++.|.-+..++ +.+|+++|+.+..... +....-...+...|..... +....+|+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 4789999999996544333 2389999997643211 1111112223333322211 234568888
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+.- ..|+. .....-+ +....|++||++++-.
T Consensus 156 fID-~~H~~-~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 156 FID-NAHAN-TFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEE-SSCSS-HHHHHHH-HHHHTCCTTCEEEECS
T ss_pred EEc-CCcch-HHHHHHH-HHhcccCcCCEEEEEc
Confidence 743 33443 2212223 4668999999998864
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.024 Score=56.42 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=62.2
Q ss_pred CCCCeEEEECCCCchhHHHhcc----C-CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCCCC---CCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP----R-NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYP---SQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lpf~---d~sFDlVv 343 (666)
..+.+|||++||.|.=+.++++ . .|+++|+++.-+...+ +..+..|+... +...|...+... .+.||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~-~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH-HHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 3457899999999976666553 2 7999999987665554 34455566553 333344444322 25799999
Q ss_pred e----ccccc-------cc--c-cC--h-------HHHHHHHHHhccCCeEEEEEECCC
Q 005981 344 C----SRCRI-------NW--T-RD--D-------GILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 344 ~----s~~l~-------h~--~-~d--~-------~~~L~el~RvLkPGG~lv~st~P~ 379 (666)
+ +.... .| . .+ . ..++..+. .|+|||.++.+|-..
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 5 22110 01 0 11 1 12333444 479999999998533
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.38 E-value=0.092 Score=48.50 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCCCccceE
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp~tyDli 586 (666)
..+++....+. +|||.+||.|+|..++.++-.... ++..++- +..+..+....+ ...+..+. .....||++
T Consensus 11 m~~l~~~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~--~i~g~ei~~~~~~~~~~~~~--~~~~~~~~--~~~~~fd~i 82 (223)
T d2ih2a1 11 MVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAY--RFVGVEIDPKALDLPPWAEG--ILADFLLW--EPGEAFDLI 82 (223)
T ss_dssp HHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCS--EEEEEESCTTTCCCCTTEEE--EESCGGGC--CCSSCEEEE
T ss_pred HHHhcCCCCcC--EEEECCCchHHHHHHHHHhccccc--eEEeeecCHHHHhhccccee--eeeehhcc--cccccccee
Confidence 44555555553 699999999999988876411111 2333332 222222211111 11222111 112789999
Q ss_pred EeccccccCCC-------------------------CCCHH-HHHHHhhhcccCCeEEEEE--eCh---hHHHHHHH-HH
Q 005981 587 HAAGLFSVESK-------------------------RCNMS-TIMLEMDRMLRPGGHVYIR--DSI---DVMDELQE-IG 634 (666)
Q Consensus 587 ha~~~f~~~~~-------------------------~c~~~-~~l~E~dRiLRPgG~~ii~--d~~---~~~~~~~~-i~ 634 (666)
.++--|..... ..++. ..+...-+.|+|||++++= ... ..-..+++ |+
T Consensus 83 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~ 162 (223)
T d2ih2a1 83 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 162 (223)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred cccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHH
Confidence 98877653221 12221 3455677899999997662 111 11234444 45
Q ss_pred HhcCcEEEEEecc-CCCCCceEEEEEEeC
Q 005981 635 KAMGWHVTLRETA-EGPHASYRILTADKR 662 (666)
Q Consensus 635 ~~l~W~~~~~~~~-~~~~~~e~~l~~~k~ 662 (666)
+..+.++.....- .+....--||+.+|.
T Consensus 163 ~~~~i~i~~~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 163 REGKTSVYYLGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp HHSEEEEEEEESCSTTCCCCEEEEEEESS
T ss_pred hcCCEEEEcchhcCCCCCCcEEEEEEEeC
Confidence 5555453332211 123445667777774
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.33 E-value=0.015 Score=59.98 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=65.0
Q ss_pred CCeEEEECCCCchhHHHhcc-C---CeEEEeCCcchHHHHHHHHHHHcCCCce----------------EEeecccCCC-
Q 005981 275 IRVVMDAGCGVASFGAYLLP-R---NVITMSIAPKDVHENQIQFALERGAPAM----------------VAAFATRRLP- 333 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~----------------~~~~d~e~Lp- 333 (666)
..+|||..||+|..+.+.+. . .|++.|+++..+..++.+.. .++.... ....|+..+.
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~-lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVM-LNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHH-HHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHH-hcCccccccccccccccccceeEeehhhhhhhhH
Confidence 36899999999988885442 2 89999999988877764443 3333211 1111211111
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
-....||+|..- .+ ..+..+|..+.+.++.||++.++.
T Consensus 125 ~~~~~fDvIDiD----Pf-Gs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLD----PF-GSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEEC----CS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCC----CC-CCcHHHHHHHHHHhccCCEEEEEe
Confidence 123579999843 23 556789999999999999999995
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=94.65 E-value=0.029 Score=56.05 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=77.9
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc-cccc-cccCCCCCCCC-CccceEE
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVM-HDWCEPFDTYP-RTYDLLH 587 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~-~~~ce~~~~yp-~tyDlih 587 (666)
.-.+|+|.+||.|+|..++.++ ...-.-.++..+|- +.++.+|... +. .... .+. +...+ ..||+|-
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~fD~vi 193 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG---LANLLVDPVDVVI 193 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT---TSCCCCCCEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccc---ccccccccccccc
Confidence 3457999999999999887532 00112345666663 4455544332 22 2222 233 22233 7899999
Q ss_pred eccccccCCC--------------CCCHH-HHHHHhhhcccCCeEEEE--EeC---hhHHHHHHHHHHhcCcEEEEEecc
Q 005981 588 AAGLFSVESK--------------RCNMS-TIMLEMDRMLRPGGHVYI--RDS---IDVMDELQEIGKAMGWHVTLRETA 647 (666)
Q Consensus 588 a~~~f~~~~~--------------~c~~~-~~l~E~dRiLRPgG~~ii--~d~---~~~~~~~~~i~~~l~W~~~~~~~~ 647 (666)
++-=|..... .-++. -.+..+-+.|+|||++++ .+. ...-..+++.+-.-++-..+.+..
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp 273 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 273 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECC
Confidence 9866642111 01112 246668899999997655 322 122455666555545544444432
Q ss_pred C----CCCCceEEEEEEeC
Q 005981 648 E----GPHASYRILTADKR 662 (666)
Q Consensus 648 ~----~~~~~e~~l~~~k~ 662 (666)
. +...+--|||.+|+
T Consensus 274 ~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKA 292 (328)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred ccccCCCCCCeEEEEEECC
Confidence 2 22444568888874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=94.36 E-value=0.12 Score=49.97 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=70.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC------CCChhHHHhccccccc-cccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG------FNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~------~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|+|+|||-||+.-++++++- |+.|...+. .......+..+++..- .+-+ +..-|.-.|+|-|+-.=+
T Consensus 69 ~vvDlG~~pGgws~~~a~~~~---v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv--~~l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 69 KVVDLGCGRGGWSYYCGGLKN---VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV--FFIPPERCDTLLCDIGES 143 (257)
T ss_dssp EEEEETCTTSHHHHHHHTSTT---EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT--TTSCCCCCSEEEECCCCC
T ss_pred eEEEecCCCChHHHHHHhhcC---CCceeEEEecCccccCCccccccccccccchhhhhH--HhcCCCcCCEEEeeCCCC
Confidence 489999999999999998841 234443331 1122222223333221 1111 222247899999984322
Q ss_pred cCCCCCCHH-----HHHHHhhhcccCCeEEEEE--e--ChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEE
Q 005981 594 VESKRCNMS-----TIMLEMDRMLRPGGHVYIR--D--SIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 659 (666)
Q Consensus 594 ~~~~~c~~~-----~~l~E~dRiLRPgG~~ii~--d--~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~ 659 (666)
..+. .++ .+|.=+.++|+|||.|++. . ..+++++|+.+-..++= ..++..-.-....|..+||
T Consensus 144 -s~~~-~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg-~lVR~P~SRnst~EmY~Vs 215 (257)
T d2p41a1 144 -SPNP-TVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGG-ALVRNPLSRNSTHEMYWVS 215 (257)
T ss_dssp -CSSH-HHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCC-EEECCTTSCTTCCCEEEET
T ss_pred -CCCc-hhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCC-eeEcCCCCccccceeEEee
Confidence 1111 111 4444455899999999997 3 45666666665544433 2233221112345777765
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.30 E-value=0.04 Score=54.27 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=59.7
Q ss_pred CCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc-----cc-----------cccccccCCCCCCC
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-----GL-----------IGVMHDWCEPFDTY 579 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er-----Gl-----------ig~~~~~ce~~~~y 579 (666)
..+-++||-+|+|.|+.+.++++.+.. -+-++.+| +..++++.+- |. +-+.++-.-.+..=
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD-~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~ 146 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEID-EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN 146 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESC-HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCc--eEEEecCC-HHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence 356688999999999999999887531 22345554 3444554321 10 11222111000000
Q ss_pred CCccceEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.++||+|-.+ ++........ -...+..+.|.|+|||.++..
T Consensus 147 ~~~yDvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 147 NRGFDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CCCEEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 3789999875 4432211111 147899999999999999984
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.15 E-value=0.041 Score=56.24 Aligned_cols=100 Identities=13% Similarity=0.253 Sum_probs=61.6
Q ss_pred CeEEEECCCCchhHHHhcc-----------------C---CeEEEeCCcchHHHHHHHHHHHcC-CCceEEee---cccC
Q 005981 276 RVVMDAGCGVASFGAYLLP-----------------R---NVITMSIAPKDVHENQIQFALERG-APAMVAAF---ATRR 331 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~-----------------~---~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~---d~e~ 331 (666)
-+|.|+||.+|..+..+.+ . +|.--|+-.+|.+........... ....+..+ ....
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 5699999999965532211 1 566778877776554432222111 11222222 2333
Q ss_pred CCCCCCCeeEEEecccccccccC---------------------------------hHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRD---------------------------------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d---------------------------------~~~~L~el~RvLkPGG~lv~st 376 (666)
--||+++.|+++|+.+ +||... ...+|+-=.+-|+|||.++++.
T Consensus 133 rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3378999999998876 788531 1135666678899999999985
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.093 Score=50.68 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=75.6
Q ss_pred CCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhc----cc---cccccc-cCCCC-CC---C-
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHD-WCEPF-DT---Y- 579 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~~-~ce~~-~~---y- 579 (666)
.....+|||+|||.|.-+..|+.+ +. +|+.+| ++..+++|.+. +| +-+.|. +-+.+ .. .
T Consensus 59 ~~~~~~~LDiGtGsg~I~~~l~~~~~~~-----~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 133 (250)
T d2h00a1 59 KSTLRRGIDIGTGASCIYPLLGATLNGW-----YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEES 133 (250)
T ss_dssp GCCCCEEEEESCTTTTHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCC
T ss_pred ccccceEEEeCCCchHHHHHHHHhCCCc-----cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcc
Confidence 445678999999999999999877 43 566666 35666666543 44 334432 22221 11 1
Q ss_pred CCccceEEeccccccCCCC--------------------------------CCHHHHHHHhhhcccCCeEEEEE-eChhH
Q 005981 580 PRTYDLLHAAGLFSVESKR--------------------------------CNMSTIMLEMDRMLRPGGHVYIR-DSIDV 626 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~--------------------------------c~~~~~l~E~dRiLRPgG~~ii~-d~~~~ 626 (666)
...||+|-|+-=|-..... .-+..++.|--+.++..|++..- -..+.
T Consensus 134 ~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~ 213 (250)
T d2h00a1 134 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCS 213 (250)
T ss_dssp SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTS
T ss_pred cCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhh
Confidence 2579999987554321100 01345777888889999998643 34566
Q ss_pred HHHHHHHHHhcCcE
Q 005981 627 MDELQEIGKAMGWH 640 (666)
Q Consensus 627 ~~~~~~i~~~l~W~ 640 (666)
+.+|+++++..+..
T Consensus 214 l~~i~~~L~~~g~~ 227 (250)
T d2h00a1 214 LAPLKEELRIQGVP 227 (250)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCC
Confidence 77788888888874
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=93.57 E-value=0.11 Score=51.67 Aligned_cols=142 Identities=11% Similarity=0.034 Sum_probs=76.3
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc------cc----cccccccC-CCCCCCCCccce
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL----IGVMHDWC-EPFDTYPRTYDL 585 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er------Gl----ig~~~~~c-e~~~~yp~tyDl 585 (666)
.+-++||=+|.|.|+.++++++.. ++--+-++.+| +..++++.+- ++ +.+.++-+ +-+...++.||+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEID-p~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVD-GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCC-HHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence 457899999999999999999873 12222344444 2334444331 11 22222211 112334688999
Q ss_pred EEecccccc-CCCCCC--HHHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEEEEec---cCCCCCce
Q 005981 586 LHAAGLFSV-ESKRCN--MSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRET---AEGPHASY 654 (666)
Q Consensus 586 iha~~~f~~-~~~~c~--~~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~~~~~---~~~~~~~e 654 (666)
|-++ ++.. ....+. -...+..+.|.|+|||.++..- ..+....+.+.+++.=-.+..... -. +.+..
T Consensus 166 Ii~D-~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPty-p~G~w 243 (295)
T d1inla_ 166 IIID-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTY-PSGMW 243 (295)
T ss_dssp EEEE-C----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTS-TTSEE
T ss_pred EEEc-CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeecee-cCccc
Confidence 9986 3332 111111 1488999999999999999952 122233333333333333333221 11 22456
Q ss_pred EEEEEEeC
Q 005981 655 RILTADKR 662 (666)
Q Consensus 655 ~~l~~~k~ 662 (666)
.+++|.|.
T Consensus 244 ~f~~aSk~ 251 (295)
T d1inla_ 244 SYTFASKG 251 (295)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 78888875
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=93.57 E-value=0.01 Score=54.91 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=58.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCC-C---CCccceEEe
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDT-Y---PRTYDLLHA 588 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~-y---p~tyDliha 588 (666)
+|||+.||+|++|-..+.+|+. .|+-+|. ...++.+.+. |+ +.+++..++.+.. + -..||+|-+
T Consensus 44 ~vLDlfaGsG~~g~ea~srGa~----~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 44 MALDLYSGSGGLAIEAVSRGMD----KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcccccccccceeeecchh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5999999999999999999873 4555654 3444444332 33 3344333322211 1 257999988
Q ss_pred ccccccCCCCCCHHHHHHHhh--hcccCCeEEEEE
Q 005981 589 AGLFSVESKRCNMSTIMLEMD--RMLRPGGHVYIR 621 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~d--RiLRPgG~~ii~ 621 (666)
+==|. .-.+..+|..+. .+|+|+|++|+-
T Consensus 120 DPPY~----~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 120 DPPYA----KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhhh----hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 62221 123456666653 589999999984
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.017 Score=52.24 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCCCeEEEECCC-CchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC-CCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L-pf~d~sFDlVv~s~~ 347 (666)
+++.+||-+|+| .|.++..+++. +|+++|.++..+ +.+++.|....+...+.... .-..+.||+|+....
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~-----~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-----EDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-----HHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHH-----HHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 355899999998 56666666544 899999988644 55666675543322211111 012357999885322
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+ ...+....++|++||.+++.+.
T Consensus 101 ~~~-----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 101 SLT-----DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CST-----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCc-----cchHHHHHHHhhccceEEEecc
Confidence 111 1124567899999999988753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.29 E-value=0.084 Score=47.17 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=59.5
Q ss_pred CCCCeEEEECCC-CchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC--------CC-CCCCCe
Q 005981 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR--------LP-YPSQAF 339 (666)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~--------Lp-f~d~sF 339 (666)
+.+.+||-+||| .|.++..+++. +|+++|.++. +.+.+++.+....+....... +. ...+.+
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~-----r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcccccccchHHH-----HHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence 345789999998 45555555543 8999998865 346677766554333221111 00 012568
Q ss_pred eEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 340 DlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+|+-.. .....+..+.++||+||.+++...
T Consensus 100 D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 100 NVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 9987321 235678889999999999998864
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.55 Score=46.77 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=72.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccc--cccccccCCCCC-CC---CCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL--IGVMHDWCEPFD-TY---PRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGl--ig~~~~~ce~~~-~y---p~tyDliha~~~f~ 593 (666)
..|||+-||.|.|+..|++++..|+.+...+..-.+...-+...|+ +..++.-.|... .. ...||+|-.+
T Consensus 214 ~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD---- 289 (358)
T d1uwva2 214 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD---- 289 (358)
T ss_dssp CEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC----
T ss_pred ceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC----
Confidence 3599999999999999999876444444333221222223333465 444444444322 22 2678988776
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..|..+..++.++-+ ++|.-.++|+ |.....+.++.+.+ -.|++..
T Consensus 290 --PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~-~gy~l~~ 336 (358)
T d1uwva2 290 --PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-AGYTIAR 336 (358)
T ss_dssp --CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHH-TTCEEEE
T ss_pred --CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeE
Confidence 556666777777766 4899999999 54455566766654 3677643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.85 E-value=0.091 Score=52.60 Aligned_cols=143 Identities=11% Similarity=0.093 Sum_probs=76.2
Q ss_pred CCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----------cccccccccC-CCCCCCCCccc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----------GLIGVMHDWC-EPFDTYPRTYD 584 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----------Glig~~~~~c-e~~~~yp~tyD 584 (666)
..+-++||-+|.|.|+.++++++.. +|--+-++.+| +..++++.+- --+.+.++-. +-+....+.||
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID-~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEID-EMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSC-HHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEccc-HHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCC
Confidence 3457889999999999999999874 22223344443 3344444331 0011111110 00112357899
Q ss_pred eEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEEEEeccCCC---CCce
Q 005981 585 LLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEGP---HASY 654 (666)
Q Consensus 585 liha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~~~~~~~~~---~~~e 654 (666)
+|-.+ ++.-...... -...+..+.|+|+|||.++..- ..+....+.+.++..=..+.....- -| .+..
T Consensus 182 vII~D-~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~-vPtyp~G~w 259 (312)
T d2b2ca1 182 VIITD-SSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSI-VSTYPSGSM 259 (312)
T ss_dssp EEEEC-CC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEE-CTTSGGGEE
T ss_pred EEEEc-CCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeec-cCCcCCccc
Confidence 99986 3322111111 1377889999999999999962 2334444555555544455443321 12 2345
Q ss_pred EEEEEEeC
Q 005981 655 RILTADKR 662 (666)
Q Consensus 655 ~~l~~~k~ 662 (666)
.+++|.|.
T Consensus 260 ~f~~aSk~ 267 (312)
T d2b2ca1 260 GYLICAKN 267 (312)
T ss_dssp EEEEEESS
T ss_pred eeeEEECC
Confidence 67788764
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.13 Score=50.80 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc----------cccccccccC-CCCCCCCCccc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----------GLIGVMHDWC-EPFDTYPRTYD 584 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er----------Glig~~~~~c-e~~~~yp~tyD 584 (666)
...-++||-+|.|.|+.+..+++.. ++--+-++.+| +..++++.+- --+.+.++-+ +-+..-+++||
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD-~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEID-EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCC-HHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3456889999999999999999873 22333445555 2344444321 1123332221 11222357999
Q ss_pred eEEeccccccCCCCCCH--HHHHHHhhhcccCCeEEEEE
Q 005981 585 LLHAAGLFSVESKRCNM--STIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 585 liha~~~f~~~~~~c~~--~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|-++ ++.-...-..+ ...+..+.|.|+|||.+++.
T Consensus 154 vIi~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 99986 44322111111 27788999999999999996
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=92.26 E-value=0.22 Score=48.70 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=79.7
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc-----c-----ccccccccCCC-CCCCCCccce
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-----G-----LIGVMHDWCEP-FDTYPRTYDL 585 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er-----G-----lig~~~~~ce~-~~~yp~tyDl 585 (666)
..-++||-+|.|.|+.++.+++.. ++--+.++.+| +..++++.+- | -+-+..+-+-. +....+.||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID-~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDID-GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESC-HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCC-HHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence 456789999999999999999863 22333445555 2334443321 1 12233222111 2223588999
Q ss_pred EEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEEEEeccCCC---CCceE
Q 005981 586 LHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEGP---HASYR 655 (666)
Q Consensus 586 iha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~~~~~~~~~---~~~e~ 655 (666)
|-.+ ++........ -.+....+.|.|+|||.++..- ..+....+.+.++..=-.+...... -| .+...
T Consensus 152 Ii~D-~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~-vPsy~~g~w~ 229 (274)
T d1iy9a_ 152 IMVD-STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTAN-IPTYPSGLWT 229 (274)
T ss_dssp EEES-CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEC-CTTSGGGCEE
T ss_pred EEEc-CCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEE-eeecCCCceE
Confidence 9876 3332211111 1378888999999999999852 2233444445455443444444321 12 13456
Q ss_pred EEEEEeC
Q 005981 656 ILTADKR 662 (666)
Q Consensus 656 ~l~~~k~ 662 (666)
+++|.|.
T Consensus 230 f~~aS~~ 236 (274)
T d1iy9a_ 230 FTIGSKK 236 (274)
T ss_dssp EEEEESS
T ss_pred EEEEcCC
Confidence 7777775
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.84 E-value=0.11 Score=47.23 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=59.0
Q ss_pred CCCCeEEEECCCC-chhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC------CCCCCeeE
Q 005981 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 341 (666)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp------f~d~sFDl 341 (666)
+++.+||=+|||. |.++..+++. +|+++|.++. +.+.+++.|....+...+ +.+. .....+|+
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~-----r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI-----CVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH-----HHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh-----hHHHHHhhCccccccccc-hhHHHHHHHHhhccCcce
Confidence 3457899999986 6666666654 7999998764 345666666543332211 1110 12345999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+-... ....+.+..+.|||||.+++...
T Consensus 100 vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 100 VIMAGG-------GSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEccC-------CHHHHHHHHHHHhcCCEEEEEee
Confidence 984321 13467888899999999999754
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.48 E-value=0.1 Score=51.33 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=68.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCCh---hHHHhc-cc---cccccccCCCCCCCCCc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTL---PVIYDR-GL---IGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l---~~~~er-Gl---ig~~~~~ce~~~~yp~t 582 (666)
.++...|. +||||-||-||=..+|++.+.+. .|+.+|. ..-+ .-..+| |+ +-+.++....-...+..
T Consensus 97 ~L~~~~g~--~vLD~CAaPGgKt~~la~l~~~~---~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~ 171 (284)
T d1sqga2 97 WLAPQNGE--HILDLCAAPGGKTTHILEVAPEA---QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 171 (284)
T ss_dssp HHCCCTTC--EEEEESCTTCHHHHHHHHHCTTC---EEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred ccCccccc--eeEeccCccccchhhhhhhhhhh---hhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccccc
Confidence 44555554 59999999999887777653221 2444442 2333 223333 54 21222221111113478
Q ss_pred cceEEe----cc--ccccCCCCCCH----------------HHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHh
Q 005981 583 YDLLHA----AG--LFSVESKRCNM----------------STIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKA 636 (666)
Q Consensus 583 yDliha----~~--~f~~~~~~c~~----------------~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~ 636 (666)
||.|-+ ++ .+.. +-++ ..+|...-+.|||||++|.+ ...|.-+.|+.++++
T Consensus 172 fd~IL~DaPCSg~G~~rr---~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~ 248 (284)
T d1sqga2 172 FDRILLDAPCSATGVIRR---HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 248 (284)
T ss_dssp EEEEEEECCCCCGGGTTT---CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred ccEEEEeccccccCcccc---ccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHh
Confidence 999884 32 2221 1111 17788888999999999997 455555566666665
Q ss_pred -cCcEE
Q 005981 637 -MGWHV 641 (666)
Q Consensus 637 -l~W~~ 641 (666)
-.|+.
T Consensus 249 ~~~~~~ 254 (284)
T d1sqga2 249 TADAEL 254 (284)
T ss_dssp CTTCEE
T ss_pred CCCcEE
Confidence 44544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.31 E-value=0.22 Score=49.13 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=62.7
Q ss_pred CCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh----------ccccccc-cccCCCCCCCC-Ccc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD----------RGLIGVM-HDWCEPFDTYP-RTY 583 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e----------rGlig~~-~~~ce~~~~yp-~ty 583 (666)
..+-++||=+|.|.|+.++++++.. ++-.+-++.+|. ..++++.+ ..-+.+. .|-.+-+...+ +.|
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~-~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDK-MVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCH-HHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCH-HHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence 3567899999999999999999873 223344555552 33333322 1112222 22212222344 689
Q ss_pred ceEEeccccccCCCC--CCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESKR--CNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~~--c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|+|-.+ ++.-...- .--...+..+.|+|+|||.++..
T Consensus 156 DvIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 156 DAVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 999975 44322111 11147899999999999999996
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.21 E-value=0.14 Score=51.00 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=69.1
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhh----CCCceEEEEeeccCC-C---CChhHHHhc-ccccc--ccccCCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSG-F---NTLPVIYDR-GLIGV--MHDWCEPFDTY 579 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~-~---~~l~~~~er-Glig~--~~~~ce~~~~y 579 (666)
.++...|. .||||-||-||=+.+|++ .|. |+..|. . ..+.-..+| |+..+ +++.-..+..+
T Consensus 111 ~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~------i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~ 182 (313)
T d1ixka_ 111 ALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGV------IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL 182 (313)
T ss_dssp HHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSE------EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred cccCCccc--eeeecccchhhhhHhhhhhcccccc------eeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 45566665 499999999995555543 232 333442 2 233333333 55333 33332223334
Q ss_pred CCccceEEec----cc--cccCC------CCCCH-------HHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHh
Q 005981 580 PRTYDLLHAA----GL--FSVES------KRCNM-------STIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKA 636 (666)
Q Consensus 580 p~tyDliha~----~~--f~~~~------~~c~~-------~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~ 636 (666)
+..||.|-++ +. +..-. ..-++ ..+|...-+.|||||++|.+ ...|.-+.|+.++++
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~ 262 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 262 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhc
Confidence 5789988753 22 21100 00011 17788888999999999997 455555666677777
Q ss_pred cCcEEE
Q 005981 637 MGWHVT 642 (666)
Q Consensus 637 l~W~~~ 642 (666)
..++..
T Consensus 263 ~~~~~~ 268 (313)
T d1ixka_ 263 FDVELL 268 (313)
T ss_dssp SSEEEE
T ss_pred CCCEEe
Confidence 665543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=91.06 E-value=0.11 Score=47.67 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=54.2
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh---c-cc----cccccccCCCCCC-C--CCccceEEe
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD---R-GL----IGVMHDWCEPFDT-Y--PRTYDLLHA 588 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e---r-Gl----ig~~~~~ce~~~~-y--p~tyDliha 588 (666)
+|||+-||+|.+|-.-+.+|+. .|+-+|. ...+..+.+ + |+ .-+..+-+..+.. . ...||+|.+
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~----~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAK----KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS----EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred eEeecccCccceeeeeeeecce----eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 5999999999999999999984 5555664 333333332 2 22 1111111111111 1 256999988
Q ss_pred ccccccCCCCCCHHHHHHHh--hhcccCCeEEEEE
Q 005981 589 AGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIR 621 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~ii~ 621 (666)
+==|.. ...+.+|.-+ ..+|+++|.+|+-
T Consensus 122 DPPY~~----~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPPFHF----NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCCSSS----CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhHhh----hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 732221 1234444433 3689999999994
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.47 E-value=0.38 Score=44.22 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=60.7
Q ss_pred CCCCeEEEECCCC-chhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC------CCCCCeeE
Q 005981 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 341 (666)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp------f~d~sFDl 341 (666)
+++.+||.+|||. |.++..+++. .|+++|.++. +.+.+++.|....+... .+++. .....+|.
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~-----rl~~a~~~Ga~~~~~~~-~~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA-----RLAHAKAQGFEIADLSL-DTPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCEEEETTS-SSCHHHHHHHHHSSSCEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch-----hhHhhhhccccEEEeCC-CcCHHHHHHHHhCCCCcEE
Confidence 3558999999997 5555555432 7999998875 34677777754322111 01100 12356899
Q ss_pred EEecccc------ccc--ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 342 IHCSRCR------INW--TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 342 Vv~s~~l------~h~--~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++-.... ++. .......+..+.+++||||.+++...
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 9843210 110 12234789999999999999998853
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=90.35 E-value=0.044 Score=50.72 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=78.2
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc--cccccccCCCCCCC----C-C
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL--IGVMHDWCEPFDTY----P-R 581 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl--ig~~~~~ce~~~~y----p-~ 581 (666)
..+.+..|.+ ++|..+|.||-.++|++++. .|+.+|. +.++..+-++-. +..+|..+..+..+ . .
T Consensus 12 ~~l~~~~g~~--~vD~T~G~GGhs~~iL~~~~-----~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 12 DLLAVRPGGV--YVDATLGGAGHARGILERGG-----RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHTCCTTCE--EEETTCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HhcCCCCCCE--EEEeCCCCcHHHHHHhcccC-----cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCC
Confidence 3455666665 99999999999999999965 5667764 455666554322 67778776554432 2 4
Q ss_pred ccceEEeccccccCC----CC--CCHHHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHhcCcEEE
Q 005981 582 TYDLLHAAGLFSVES----KR--CNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVT 642 (666)
Q Consensus 582 tyDliha~~~f~~~~----~~--c~~~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~l~W~~~ 642 (666)
.+|.|-++-=.|..+ +| ..+...|.....+|+|||.+++-.-.. ..+.++.+++.-.++..
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVL 152 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEES
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceec
Confidence 577776652222111 11 011234555579999999999864332 23456777776666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.25 E-value=0.2 Score=45.40 Aligned_cols=93 Identities=12% Similarity=-0.002 Sum_probs=61.1
Q ss_pred CCCCeEEEECCCC-chhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC------CCCCCeeE
Q 005981 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 341 (666)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp------f~d~sFDl 341 (666)
.++.+||=+|||. |.++..+++. .|+++|.++. +.+.+++.|....+.....+... ...+.+|+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE-----KFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH-----HHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 4558999999997 6666665543 6888998876 34677777765443221111110 12356899
Q ss_pred EEecccccccccChHHHHHHHHHhccCC-eEEEEEEC
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAAQ 377 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPG-G~lv~st~ 377 (666)
|+-. ......+.+..+.|++| |.+++...
T Consensus 102 vie~-------~G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 102 SLDC-------AGTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEES-------SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEe-------cccchHHHHHHHHhhcCCeEEEecCC
Confidence 9732 12356899999999996 99998864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.73 E-value=0.15 Score=45.68 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=57.8
Q ss_pred CCCCeEEEECC--CCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC------CCCCCCeeE
Q 005981 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL------PYPSQAFDL 341 (666)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L------pf~d~sFDl 341 (666)
+++.+||-.|+ |.|..+..+++. +|++++-++. +.+.+++.|....+...+ +++ ....+.+|+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~-----~~~~~~~~Ga~~vi~~~~-~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE-----GQKIVLQNGAHEVFNHRE-VNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHTTCSEEEETTS-TTHHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccc-----ccccccccCccccccccc-ccHHHHhhhhhccCCceE
Confidence 35689999997 355666666653 8888886653 335666777654332111 111 013467999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|+.+.. ...+.+..++|++||.++...
T Consensus 101 v~d~~g--------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 101 IIEMLA--------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEESCH--------HHHHHHHHHHEEEEEEEEECC
T ss_pred Eeeccc--------HHHHHHHHhccCCCCEEEEEe
Confidence 985422 356888899999999998864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.29 E-value=0.21 Score=45.08 Aligned_cols=91 Identities=26% Similarity=0.372 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCC-chhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeec---------ccCCCCCCCC
Q 005981 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---------TRRLPYPSQA 338 (666)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d---------~e~Lpf~d~s 338 (666)
..+.+||-+|||. |.++..+++. +|+++|.++.. .+.+++.|....+...+ ..++ .....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~-----~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g 100 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR-----LKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRG 100 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH-----HHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSC
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccccc-----ccccccccceEEEeccccchHHHHHHHHHh-hCCCC
Confidence 3458999999983 5555555543 68999988753 35666666543322111 0111 12346
Q ss_pred eeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 339 FDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|+|+-... ....+....+.|++||.+++..
T Consensus 101 ~Dvvid~vG-------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 101 ADFILEATG-------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEEECSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeecCC-------chhHHHHHHHHhcCCCEEEEEe
Confidence 999984321 1346788899999999998875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=0.78 Score=40.60 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=58.7
Q ss_pred CCCCeEEEECCCCc-hhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--------CCCCCe
Q 005981 273 HHIRVVMDAGCGVA-SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (666)
Q Consensus 273 ~~~~~VLDIGCGtG-~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--------f~d~sF 339 (666)
.++.+||=+|||.. .++..++.. +|+++|.++. +.+.+++.|....+...+ +... -....+
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~-----rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT-----RLSKAKEIGADLVLQISK-ESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH-----HHHHHHHhCCcccccccc-cccccccccccccCCCCc
Confidence 34578999999864 444444432 7999998865 446777777554333221 1100 012468
Q ss_pred eEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 340 DlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+|+-.. .-...+....+.+++||.+++...
T Consensus 99 Dvvid~~-------G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 99 EVTIECT-------GAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred eEEEecc-------CCchhHHHHHHHhcCCCEEEEEec
Confidence 9998432 225678899999999999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.27 E-value=0.28 Score=44.05 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=57.5
Q ss_pred CCCCeEEEECCCCc-hhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC-----CCCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVA-SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG-~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L-----pf~d~sFDlV 342 (666)
.++.+||=+|||.- .++..+++. .|+++|.++. +.+.+++.|....+...+ ++. .+.++.||+|
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~-----k~~~a~~~Ga~~~i~~~~-~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES-----RLELAKQLGATHVINSKT-QDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH-----HHHHHHHHTCSEEEETTT-SCHHHHHHHHTTSCEEEE
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH-----HHHHHHHcCCeEEEeCCC-cCHHHHHHHHcCCCCcEE
Confidence 45688999999853 344444432 6677887764 346666667544332211 111 1224579999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+-. ......+.+..++++++|.+++...
T Consensus 101 id~-------~G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LES-------TGSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEC-------SCCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEc-------CCcHHHHHHHHhcccCceEEEEEee
Confidence 832 1235678889999999999998753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.56 E-value=0.21 Score=44.20 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCC-chhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC----C-CCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL----P-YPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L----p-f~d~sFDlVv 343 (666)
+++.+||=+|||. |.++..+++. +|+++|.++. +.+.+++.|....+...+ ++. - ...+.+|.|.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~-----~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA-----KLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh-----HHHhhhccCccccccccc-hhHHHHHHHhhcCCccccc
Confidence 3457899999875 4444455443 8999998764 335667766543332111 110 0 1123344554
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.. ....+....+.|++||.+++...
T Consensus 100 ~~~--------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 100 TAV--------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp CCS--------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred ccc--------cchHHHHHHHHhcCCcEEEEEEe
Confidence 332 24568889999999999988753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=0.4 Score=42.57 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=57.4
Q ss_pred CCCCeEEEECCCC-chhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+++.+||=+|||. |.++..+++. +++++|.++..+ +.+++.|....+...+........+.+|.|+-...
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-----~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g- 102 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-----EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA- 102 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-----HHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-----HHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence 4568899999874 5566666543 777888776533 45666665543322111111112357999984321
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
....+....++|++||.+++...
T Consensus 103 ------~~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 103 ------APHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ------SCCCHHHHHTTEEEEEEEEECCC
T ss_pred ------cchhHHHHHHHHhcCCEEEEecc
Confidence 12346777899999999998754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.19 E-value=0.43 Score=42.28 Aligned_cols=92 Identities=13% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCCCeEEEECCC--CchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC----C--CCCCCee
Q 005981 273 HHIRVVMDAGCG--VASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL----P--YPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCG--tG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L----p--f~d~sFD 340 (666)
+++.+||=+||+ .|.++..++. ..|+++|.++. +.+++++.|....+... .++. . ...+.||
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~-----~~~~~~~~Ga~~~i~~~-~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE-----AVEAAKRAGADYVINAS-MQDPLAEIRRITESKGVD 99 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH-----HHHHHHHHTCSEEEETT-TSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchh-----hHHHHHHcCCceeeccC-CcCHHHHHHHHhhcccch
Confidence 455899999974 3454444443 28889988764 34566666654332211 1111 0 1235699
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+... .....+....+.|+|||.+++...
T Consensus 100 ~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 100 AVIDLN-------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEESC-------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhccc-------ccchHHHhhhhhcccCCEEEEecc
Confidence 998532 235667788999999999988754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.93 E-value=0.61 Score=46.33 Aligned_cols=54 Identities=11% Similarity=-0.082 Sum_probs=36.8
Q ss_pred HHHHHHHhhcccc--cCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHH
Q 005981 257 QYLDQIAKMVPDI--TWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHEN 310 (666)
Q Consensus 257 ~~i~~L~~~L~~i--~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a 310 (666)
..++.|.+.+.-- .......+|||||.|.|.++..|.++ +|+++|.++......
T Consensus 24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L 83 (322)
T d1i4wa_ 24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFL 83 (322)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 3455665554310 11124568999999999999999753 799999998755443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.43 E-value=0.54 Score=41.21 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCCCeEEEECCCCc-hhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC----C-CCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVA-SFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL----P-YPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG-~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L----p-f~d~sFDlVv 343 (666)
+++.+||=.|||.- ..+..+++. +|+++|.++. +.+++++.|....+...+ ++. . ...+.+|.|.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~-----r~~~~k~~Ga~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE-----KLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH-----HHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH-----HhhhhhhcCcceeccccc-chhhhhcccccCCCceEEe
Confidence 34578999998864 444444433 7888887764 345677766543332111 110 0 1123445544
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.. ....+....+.|++||.+++...
T Consensus 100 ~~~--------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 100 TAV--------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SSC--------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred ecC--------CHHHHHHHHHHhccCCceEeccc
Confidence 321 25678999999999999998753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=80.61 E-value=0.51 Score=45.17 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=46.4
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCCCCccc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTYPRTYD 584 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~yp~tyD 584 (666)
+.+++..+ -+||++|||.|....+|++++. .|+.++- +.+.+...++ .-+-++|+-...+......++
T Consensus 23 ~~~~~~~~--d~VLEIGpG~G~LT~~L~~~~~-----~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~ 95 (245)
T d1yuba_ 23 KQLNLKET--DTVYEIGTGKGHLTTKLAKISK-----QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHCCCCSS--EEEEECSCCCSSCSHHHHHHSS-----EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HhcCCCCC--CeEEEECCCccHHHHHHHhhcC-----ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceee
Confidence 44444444 4599999999999999999987 4555553 3555555444 226667766555543235666
Q ss_pred eEEec
Q 005981 585 LLHAA 589 (666)
Q Consensus 585 liha~ 589 (666)
.|-++
T Consensus 96 ~vv~N 100 (245)
T d1yuba_ 96 KIVGN 100 (245)
T ss_dssp EEEEE
T ss_pred eEeee
Confidence 55555
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=80.36 E-value=1.9 Score=40.60 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=48.1
Q ss_pred eEeeccccchHHHHHHh----hC--CCceEEEEeeccCCCCChhHHHhccccccccccCCCCCC---CC-CccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALI----EQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT---YP-RTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~----~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~---yp-~tyDliha~~ 590 (666)
+||.+|++.||-+..++ .. +..|..+-+-+. ...... .+..-|.++...+-...+ +- ..+|+|+-++
T Consensus 83 ~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~--~~~~~~-~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 83 TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS--RCQIPA-SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT--TCCCCG-GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh--hhhhhh-ccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 59999999998544332 22 222333222211 111111 111124444333222122 22 4688887764
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~ 625 (666)
- |... . ...-++....|+|||++||-|...
T Consensus 160 ~--H~~~-~--v~~~~~~~~lLk~GG~iIveD~i~ 189 (232)
T d2bm8a1 160 A--HANT-F--NIMKWAVDHLLEEGDYFIIEDMIP 189 (232)
T ss_dssp S--CSSH-H--HHHHHHHHHTCCTTCEEEECSCHH
T ss_pred C--cchH-H--HHHHHHHhcccCcCCEEEEEcCCc
Confidence 2 2221 0 112235678999999999999854
|