Citrus Sinensis ID: 005993

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660------
Protein Sequence
MFLFVDGLFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRAGR
Secondary Structure (PSIPRED)
cEEEEEccccccccccEEccccccccEEEEEEEEccccccHHHHHHcHHccccccccccccccccccccccccccccccEEEEccccccccccccEEEEEEcHHHHHHcccccEEEEEEEEcccccccHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHccccccccEEEEEcccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEccEEEccccHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccccEEEEEEcccccHHHHHHcccccccccEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccHEEEEccccHHHcccEEEEEEEccccccHHHHHHHHHccccccccccccEEEcccccccccccccccEEEEEEccccccccccEEEEEHHHHHHHHcccccEEEEcccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEcccccccHEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccEEccHHHHHHcccccEEEEcccccccccccHccEEEEEEEEEcccccccEEEEEEEEEEcccEEEEEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mflfvdglfsnskmlqlcsnlpslwsfhcicfadngggmnpdkmrhcmslgysakskaantigqygngfktstmrLGADVIVFScccgkdgksptrsiglLSYTFLrstgkedivvpmldyegsQQEWKKIIRSSLDDWNRNVETIvqwspfsseadLLHQFNLMKDHGTRIIIYNLweddqglleldfdsdkhdiqlrgvnrdeQNIKMaqhypnsrhflTYRHSLRSYASILYLrlppgfriiirgkdvehhnivndmmlskkvtyrpqpgasgiptdlhMAVDVTIGFVkdakhhidvqgfnvyhknrlikpfwrlwnasgsdgrgvIGVLEanfvepahdkqgfeRTTVLARLEARLIQMQKDYwnnncheigyaprrykkYIKDSYdreisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasdddMHVMVTARGANGSSQKILAAEKsfgkdglhrthpsaclvdsesqqdgasggssvrpfmpsqskgsevnypehflsdcslganlgQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEkmktpsiragr
Flexible Loop (DISEMBL)
MFLFVDGLFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGkdgksptrsigLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFvepahdkqgferTTVLARLEARLIQMQkdywnnncheigyaprrykKYIKDSYDReisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasddDMHVMVTArgangssqkILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRlekkegelqeereRCRSLEAQLKVMQQTIEELNKEQESLidifaeerdrrereeenlrkkikdasdtiQDLLDKikllekmktpsiragr
Low Complexity Region (SEG)
MFLFVDGLFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHelkkrlekkegelqeererCRSLEAQLKVMQQTIEELNKEQESLIDIFAeerdrrereeeNLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRAGR
Disordered region (IsUnstruct)
*FLFVDGLFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR**QNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD*************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MFLFVD*LFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGY*********IGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQL**********************LTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGAS***TDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIK**************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MFLFVDGLFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSY************************************************************KMKTPVK******************SDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLV*****************FMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKK**********CRSLEAQLKVMQQTIEELNKEQESLIDIFAEER***********KKIKDASDTIQDLLDKIKLLEKMK********
Disordered Region (DISPRO)
MFLFVDGLFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGV***********HY*NSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAP**************************ITDSSHSDKHQLHSNQRWEGKDSKRLPE***********************************************************************************************************************LSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLFVDGLFSNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKTPSIRAGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	666	2.2.26 [Sep-21-2011]
Q8BMD7	928	MORC family CW-type zinc	yes	no	0.496	0.356	0.334	3e-47
Q8TE76	937	MORC family CW-type zinc	yes	no	0.466	0.331	0.339	2e-44
Q14149	939	MORC family CW-type zinc	no	no	0.460	0.326	0.344	5e-44
Q9Y6X9	1032	MORC family CW-type zinc	no	no	0.303	0.195	0.331	3e-26
Q86VD1	984	MORC family CW-type zinc	no	no	0.477	0.323	0.269	5e-26
Q9WVL5	950	MORC family CW-type zinc	no	no	0.475	0.333	0.248	1e-25
Q8C5W4	1022	MORC family CW-type zinc	no	no	0.321	0.209	0.307	1e-25
Q69ZX6	1030	MORC family CW-type zinc	no	no	0.303	0.196	0.327	2e-25

>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2

 Score =  190 bits (482), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 194/368 (52%), Gaps = 37/368 (10%)

Query: 29  CICFADNGGGMNPDKMRHCMSLGYSAK--SKAANTIGQYGNGFKTSTMRLGADVIVFSCC 86
           C+ F D+G GM P K+   +S G++ K   K+   IG +GNGFK+ +MRLG D +VF+  
Sbjct: 83  CLTFTDDGCGMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALVFT-- 140

Query: 87  CGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETI 146
             K+G   T ++GLLS T+L     + ++VP++ +  SQQ  K I+    +D   ++E I
Sbjct: 141 --KNGN--TLAVGLLSQTYLECIQAQAVIVPIVPF--SQQNKKMIV---TEDSLPSLEAI 191

Query: 147 VQWSPFSSEADLLHQFNLMK-DHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDE 205
           + +S F+ E DLL QF+ +    GTR++I+N+  +  G  ELDFD+D++DI +   + +E
Sbjct: 192 LNYSIFNCEKDLLSQFDAIPGKKGTRVLIWNIRRNKDGKSELDFDTDQYDILVSDFDAEE 251

Query: 206 QNIK-MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSK 264
           + I  +    P + +      SLR++ SILY++  P  +I +R K V    I   +   +
Sbjct: 252 KEIGGVTSELPETEY------SLRAFCSILYMK--PRMKIFLRQKKVTTQMIAKSLANVE 303

Query: 265 KVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRL---WN 321
              Y+P        T  +  V +T GF    K+H    G  +YH NRLIK F +      
Sbjct: 304 YDIYKP--------TSTNKQVRITFGF--SCKYHNQF-GVMMYHNNRLIKAFEKAGCQLK 352

Query: 322 ASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPR 381
            +  +G GVIGV+E NF++PA++KQ FE T         L +    YW     +  + P 
Sbjct: 353 PTCGEGVGVIGVIECNFLKPAYNKQDFEYTKEYRLTINALARKLNAYWKEKISQENFEPL 412

Query: 382 RYKKYIKD 389
              + I D
Sbjct: 413 PTSRRIPD 420

Mus musculus (taxid: 10090)

>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2

 Score =  181 bits (459), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 186/348 (53%), Gaps = 37/348 (10%)

Query: 29  CICFADNGGGMNPDKMRHCMSLGYSAK--SKAANTIGQYGNGFKTSTMRLGADVIVFSCC 86
           C+ F D+G GM P K+   +S G++ K   K+   IG +GNGFK+ +MRLG D +VF+  
Sbjct: 83  CLTFTDDGCGMTPHKLHRMLSFGFTDKVIKKSQCPIGVFGNGFKSGSMRLGKDALVFT-- 140

Query: 87  CGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETI 146
             K+G   T ++GLLS T+L     + ++VP++ +  +QQ  K II    +D   ++E I
Sbjct: 141 --KNGG--TLTVGLLSQTYLECVQAQAVIVPIVPF--NQQNKKMII---TEDSLPSLEAI 191

Query: 147 VQWSPFSSEADLLHQFNLMK-DHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDE 205
           + +S F+ E DLL QF+ +    GTR++I+N+  +  G  ELDFD+D++DI +   + +E
Sbjct: 192 LNYSIFNRENDLLAQFDAIPGKKGTRVLIWNIRRNKNGKSELDFDTDQYDILVSDFDTEE 251

Query: 206 QNIK-MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSK 264
           +    +    P + +      SLR++  ILY++  P  +I +R K V    I   +   +
Sbjct: 252 KMTGGVTSELPETEY------SLRAFCGILYMK--PRMKIFLRQKKVTTQMIAKSLANVE 303

Query: 265 KVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRL---WN 321
             TY+P        T  +  V +T GF     +     G  +YH NRLIK F ++     
Sbjct: 304 YDTYKP--------TFTNKQVRITFGFSCKNSNQF---GIMMYHNNRLIKSFEKVGCQVK 352

Query: 322 ASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYW 369
            +  +G GVIGV+E NF++PA++KQ FE T         L Q    YW
Sbjct: 353 PTRGEGVGVIGVIECNFLKPAYNKQDFEYTKEYRLTINALAQKLNAYW 400

Homo sapiens (taxid: 9606)

>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3

 Score =  179 bits (455), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 188/357 (52%), Gaps = 50/357 (14%)

Query: 29  CICFADNGGGMNPDKMRHCMSLGYSAKSKAAN--TIGQYGNGFKTSTMRLGADVIVFSCC 86
           C+ F DNG GM  DK+   +S G+S K        +G YGNGFK+ +MRLG D IVF+  
Sbjct: 62  CLTFTDNGNGMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFT-- 119

Query: 87  CGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETI 146
             K+G+S   S+GLLS T+L     E +VVP++ +   +Q        +L +   ++  I
Sbjct: 120 --KNGES--MSVGLLSQTYLEVIKAEHVVVPIVAFNKHRQ------MINLAESKASLAAI 169

Query: 147 VQWSPFSSEADLLHQFN-LMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQL------- 198
           ++ S FS+E  LL + + ++   GTRIII+NL    +   E DF+ DK+DI++       
Sbjct: 170 LEHSLFSTEQKLLAELDAIIGKKGTRIIIWNL-RSYKNATEFDFEKDKYDIRIPEDLDEI 228

Query: 199 ---RGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHN 255
              +G  + E   +M Q  P S +      SLR+Y SILYL+  P  +II+RG+ V+   
Sbjct: 229 TGKKGYKKQE---RMDQIAPESDY------SLRAYCSILYLK--PRMQIILRGQKVKTQL 277

Query: 256 IVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKP 315
           +   +   ++  YRP+         L   V +T GF    K H    G  +YH+NRLIK 
Sbjct: 278 VSKSLAYIERDVYRPKF--------LSKTVRITFGFNCRNKDHY---GIMMYHRNRLIKA 326

Query: 316 FWRLWNA--SGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWN 370
           + ++     + + G GV+G++E NF++P H+KQ F+ T         L +   DYWN
Sbjct: 327 YEKVGCQLRANNMGVGVVGIIECNFLKPTHNKQDFDYTNEYRLTITALGEKLNDYWN 383

Homo sapiens (taxid: 9606)

>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 27/229 (11%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANT-IGQYGNGFKTSTMRLGADVIVFSCCCG 88
           +CF D+G GM+P      +  G SAK    +T IGQYGNG K+ +MR+G D I+F+    
Sbjct: 64  LCFLDDGAGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFT---- 119

Query: 89  KDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQ 148
              K  T +   LS TF    G ++++VP+  +    +E    +  +++ +    E I +
Sbjct: 120 --KKEDTMTCLFLSRTFHEEEGIDEVIVPLPTWNARTRE---PVTDNVEKFAIETELIYK 174

Query: 149 WSPFSSEADLLHQF-NLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQN 207
           +SPF +E +++ QF  +  D GT +II+NL   D G  ELD  S+  DIQ          
Sbjct: 175 YSPFRTEEEVMTQFMKIPGDSGTLVIIFNLKLMDNGEPELDIISNPRDIQ---------- 224

Query: 208 IKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNI 256
             MA+  P        R S R+YA++LY+   P  RI I G  V+   +
Sbjct: 225 --MAETSPEGTK--PERRSFRAYAAVLYID--PRMRIFIHGHKVQTKRL 267

May act as a transcriptional repressor. Down-regulates CA9 expression.

Homo sapiens (taxid: 9606)

>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 174/426 (40%), Gaps = 108/426 (25%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAA-NTIGQYGNGFKTSTMRLGADVIVFSCCCG 88
           +CF D+G GM+P++    +  G S K  +    IGQYGNG K+ +MR+G D I+F+    
Sbjct: 63  LCFLDDGCGMSPEEASDIIYFGRSKKRLSTLKFIGQYGNGLKSGSMRIGKDFILFT---- 118

Query: 89  KDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDD----WNRNVE 144
              K  T +    S TF       ++VVPM         W    R S+ D    +   + 
Sbjct: 119 --KKEETMTCVFFSQTFCEEESLSEVVVPM-------PSWLIRTRESVTDDPQKFAMELS 169

Query: 145 TIVQWSPFSSEADLLHQFNLMKDH-GTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR 203
            I ++SPF +EA+L+ QF+++    GT ++IYNL     G  ELD  +DK DI + G   
Sbjct: 170 IIYKYSPFKTEAELMQQFDVIYGKCGTLLVIYNLKLLLNGEPELDVKTDKEDILMAGALE 229

Query: 204 DEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLS 263
           D         +P        R S R+Y S+LY    P  RI I+ K V+  ++   +   
Sbjct: 230 D---------FP-------ARWSFRAYTSVLYFN--PWMRIFIQAKRVKTKHLCYCLYRP 271

Query: 264 KKVTYRPQPGASGIPTDL---HMAVDVTIGFVKDAKHHI--------------------D 300
           +K  Y           ++     AV +    +K+A+  +                    D
Sbjct: 272 RKYLYVTSSFKGAFKDEVKKAEEAVKIAESILKEAQIKVNQCDRTSLSSAKDVLQRALED 331

Query: 301 VQ-----------------------GFNV----------YHKNRLIKPFWRL---WNASG 324
           V+                       G NV          Y  NRLIK   ++        
Sbjct: 332 VEAKQKNLKEKQRELKTARTLSLFYGVNVENRSQAGMFIYSNNRLIKMHEKVGSQLKLKS 391

Query: 325 SDGRGVIGVLEA--NFVEPAHDKQGF----ERTTVLARLEARLIQMQKDYWNNN------ 372
             G GV+G++      +EP+H+KQ F    E   +L  +   L+Q  KD   NN      
Sbjct: 392 LLGAGVVGIVNIPLEVMEPSHNKQEFLNVQEYNHLLKVMGQYLVQYCKDTGINNRNLTLF 451

Query: 373 CHEIGY 378
           C+E GY
Sbjct: 452 CNEFGY 457

Required for spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 170/419 (40%), Gaps = 102/419 (24%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAA-NTIGQYGNGFKTSTMRLGADVIVFSCCCG 88
           +CF D+G GM+PD+    +  G S K  +    IGQYGNG K+ +MR+G D I+F+    
Sbjct: 62  LCFLDDGCGMSPDEASDVIYFGTSKKRLSTLKFIGQYGNGLKSGSMRIGKDCILFT---- 117

Query: 89  KDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDD----WNRNVE 144
              K  T +    S TF    G  ++VVP+         W    R S+ D    +   + 
Sbjct: 118 --KKEETMTCLFFSQTFCEKEGLTEVVVPI-------PSWLTRTRESITDDPQKFFTELS 168

Query: 145 TIVQWSPFSSEADLLHQFNLMKDH-GTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR 203
            I ++SPF +EA+L+ QF+++    GT +IIYNL     G  ELD  +DK DI +     
Sbjct: 169 IIFKYSPFKTEAELMQQFDMIYGRCGTLLIIYNLKLLLSGEPELDVTTDKEDILM----- 223

Query: 204 DEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLS 263
                +  +  P  R F       R+Y ++LY    P  +I I+ K V+  ++   +   
Sbjct: 224 ----AEAPEEIPERRSF-------RAYTAVLYFE--PRMKIFIQAKRVQTKHLCYSLYKP 270

Query: 264 KKVTYRPQPGASGIPTDLH-------------------------MAVDVTIGFVKDAKHH 298
           +K  Y          T++                          +A+  T   ++ A   
Sbjct: 271 RKYQYTTSSFKGKFKTEVQKAEEAVKRAELLFKEVQAKVNQPDRIALSSTQDALQKALQD 330

Query: 299 IDVQ-------------------------------GFNVYHKNRLIKPFWRL---WNASG 324
           +D +                               G  +Y  NRLIK + ++        
Sbjct: 331 VDTKHKSLRQKQRALRKARTLSLFFGVNTEDQHQAGMFIYSNNRLIKMYEKVGPQLKMKS 390

Query: 325 SDGRGVIGVLEANF--VEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPR 381
             G G+IG++      +EP+H+KQ F    +  +    L+++   Y    C +IG + R
Sbjct: 391 LLGAGIIGIVNIPLETMEPSHNKQEF----LNVQEYNHLLKVMGQYLIQYCKDIGISNR 445

Required for spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 27/241 (11%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANT-IGQYGNGFKTSTMRLGADVIVFSCCCG 88
           +CF DNG GM+P+ + + +  G SAK    +T IG+YGNG K+ +MR+G D I+F+    
Sbjct: 64  LCFLDNGVGMDPNDVINVIQFGKSAKRTPESTQIGRYGNGLKSGSMRIGKDFILFT---- 119

Query: 89  KDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQ 148
              K  T S   LS TF    G ++++VP+  +    +E    +  +++ +    E I +
Sbjct: 120 --KKENTMSCLFLSRTFHEEEGIDEVIVPLPTWNSQTRE---PVTDNMEKFAIETELIYK 174

Query: 149 WSPFSSEADLLHQFNLMK-DHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQN 207
           +SPF +E +++ QF  +    GT ++I+NL   D G  ELD  S+  DI++  ++  ++ 
Sbjct: 175 YSPFHTEEEVMTQFTKISGTSGTLVVIFNLKLTDNGEPELDVTSNPKDIRMAEIS--QEG 232

Query: 208 IKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVT 267
           +K              RHS  +YA++LY+   P  RI I G  V+   +   +   +K T
Sbjct: 233 VK------------PERHSFCAYAAVLYID--PRMRIFIHGHKVQTKKLCCCLYKPRKYT 278

Query: 268 Y 268
           +
Sbjct: 279 F 279

Mus musculus (taxid: 10090)

>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 27/229 (11%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANT-IGQYGNGFKTSTMRLGADVIVFSCCCG 88
           +CF D+G GM+P      +  G SAK    +T IGQYGNG K+ +MR+G D I+F+    
Sbjct: 64  LCFLDDGAGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFT---- 119

Query: 89  KDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQ 148
              K  T +   LS TF    G ++++VP+  +    +E    I  +++ +    E + +
Sbjct: 120 --KKEDTMTCLFLSRTFHEEEGIDEVIVPLPTWNARTRE---PITDNVEKFAIETELVYK 174

Query: 149 WSPFSSEADLLHQF-NLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQN 207
           +SPF +E  +++QF  +  + GT +II+NL   D G  ELD  S+  DIQ          
Sbjct: 175 YSPFHTEEQVMNQFMKIPGNSGTLVIIFNLKLMDNGEPELDIISNPKDIQ---------- 224

Query: 208 IKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNI 256
             MA+  P        R S R+YA++LY+   P  RI I G  V+   +
Sbjct: 225 --MAETSPEGTK--PERRSFRAYAAVLYID--PRMRIFIHGHKVQTKRL 267

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	666
255540135	816	zinc finger protein, putative [Ricinus c	0.909	0.742	0.655	0.0
297734460	830	unnamed protein product [Vitis vinifera]	0.906	0.727	0.635	0.0
359491569	2234	PREDICTED: uncharacterized protein LOC10	0.906	0.270	0.635	0.0
224119746	862	predicted protein [Populus trichocarpa]	0.900	0.696	0.647	0.0
356527801	820	PREDICTED: uncharacterized protein LOC10	0.885	0.719	0.605	0.0
449440961	824	PREDICTED: uncharacterized protein LOC10	0.900	0.728	0.635	0.0
449501464	794	PREDICTED: uncharacterized LOC101222073	0.866	0.726	0.609	0.0
297792383	804	hypothetical protein ARALYDRAFT_495140 [	0.840	0.696	0.576	0.0
240256429	819	Histidine kinase-, DNA gyrase B-, and HS	0.867	0.705	0.557	0.0
9757986	823	unnamed protein product [Arabidopsis tha	0.851	0.688	0.556	0.0

>gi|255540135|ref|XP_002511132.1| zinc finger protein, putative [Ricinus communis] gi|223550247|gb|EEF51734.1| zinc finger protein, putative [Ricinus communis]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/654 (65%), Positives = 485/654 (74%), Gaps = 48/654 (7%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           +   DNGGGM+PDKMR CMSLGYSAKSK ANTIGQYGNGFKTSTMRLGADVIVFS C GK
Sbjct: 194 LLIEDNGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCPGK 253

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
           DGKSPT+SIGLLSYTFLRSTGKEDIVVPMLDYE   QEW K+IRSS  DWNRNVETIVQW
Sbjct: 254 DGKSPTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGQEWNKMIRSSSGDWNRNVETIVQW 313

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SPFSSEADLL QFNLM DHGTRI+IYNLWEDD+G LELDFD+D HDIQLRGVNRDE+NI+
Sbjct: 314 SPFSSEADLLRQFNLMSDHGTRIVIYNLWEDDEGSLELDFDTDPHDIQLRGVNRDEKNIQ 373

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA+ +PNSRHFLTYRHSLRSYASILYLRLPP FRII+RGKDVEHHNIVNDMMLS+++TYR
Sbjct: 374 MAKEFPNSRHFLTYRHSLRSYASILYLRLPPCFRIILRGKDVEHHNIVNDMMLSQEITYR 433

Query: 270 PQPGASGIPTDL---HMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSD 326
           PQ  A G+  D    HMA  VTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNA+GSD
Sbjct: 434 PQ-SADGVAKDFNLNHMAAIVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAAGSD 492

Query: 327 GRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKY 386
           GRGVIGVLEANFVEPAHDKQGFERTTVLARLEARL+QMQK YW+ NCH+IGYAPRR K++
Sbjct: 493 GRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKTYWSTNCHKIGYAPRRNKRF 552

Query: 387 IKDSYD-------REISSK-KSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNY 438
           I +S D        ++SS+ K Y +      SS SDK   H+NQ   GK S    +  N 
Sbjct: 553 INESTDGGSSPDYSQVSSQSKKYSALRGKGLSSLSDKFYSHANQN-GGKRSDTFAKNGNP 611

Query: 439 GDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKIL 498
               GH SS G    KT            P SPS  D  D+D H+ +  R          
Sbjct: 612 AYANGHVSSNGSDGTKTSTGSGRKTHSKAPSSPSLHDVDDNDAHIALPTR---------- 661

Query: 499 AAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCS 558
                  +DGLH    S+ L D+  Q               SQSK  +V+  +H L +  
Sbjct: 662 -------QDGLHMVRLSSPLEDTTQQ-----------AVTRSQSKAGKVDNSQHVLPESD 703

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEER------ERCRSLEAQLKVMQQTIEELNKEQ 612
           L  N+ +LKQEN EL++RL+K+E E Q E        +C+SLE QL+  QQ IEELNKEQ
Sbjct: 704 L-CNINELKQENQELRERLKKREAEFQGEMMHGSMCNKCKSLEIQLQEAQQKIEELNKEQ 762

Query: 613 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRAGR 666
           ESLIDIF+EERDRR++EEENLRKK KDAS+TIQ LLDK++LLEKMK+P+ RA R
Sbjct: 763 ESLIDIFSEERDRRDKEEENLRKKYKDASNTIQQLLDKVRLLEKMKSPNYRAER 816

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734460|emb|CBI15707.3| unnamed protein product [Vitis vinifera]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 495/655 (75%), Gaps = 51/655 (7%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           +   DNGGGM+P+KMR CMSLGYSAKSK ANTIGQYGNGFKTSTMRLGADVIVFS CCGK
Sbjct: 208 LLIEDNGGGMDPEKMRQCMSLGYSAKSKIANTIGQYGNGFKTSTMRLGADVIVFSRCCGK 267

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
           DGKSPT+SIGLLSYTFLRSTGKEDIVVPM+DYE   +EW K+IRSS  DWN+NVETI+QW
Sbjct: 268 DGKSPTQSIGLLSYTFLRSTGKEDIVVPMIDYEKGGREWNKMIRSSASDWNKNVETIMQW 327

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SPFSSE DLL QFN +K+HGTRIIIYNLWEDD G LELDFD+D  DIQ+RGVNRDE+NI+
Sbjct: 328 SPFSSELDLLRQFNFIKEHGTRIIIYNLWEDDPGQLELDFDTDPKDIQIRGVNRDEKNIQ 387

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA+ +PNSRHFLTYRHSLRSYASILYLRLPPGFRII+RGKDVEHHN+VNDMM++++VTYR
Sbjct: 388 MAKQFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGKDVEHHNVVNDMMMTQEVTYR 447

Query: 270 PQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRG 329
           PQP A G+P DL+M   VTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNA+GSDGRG
Sbjct: 448 PQPSADGVPKDLNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAAGSDGRG 507

Query: 330 VIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 389
           VIGVLEANFVEPAHDKQGFERT VL+RLE RL+QMQK YW   CH+IGYAPRR KK I +
Sbjct: 508 VIGVLEANFVEPAHDKQGFERTIVLSRLETRLLQMQKTYWTTYCHKIGYAPRRNKKLINE 567

Query: 390 SYDREIS----------SKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYG 439
           S  RE S           KK   +    T  S+ DKH  HSN +  G++ +R PE     
Sbjct: 568 SA-RETSPDYLPQTPSQPKKKVGASSGKTPLSNLDKHASHSNHKQGGRELERTPETVYQS 626

Query: 440 DRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILA 499
              GH SSK + +   P + R+  S   P SPSAED  DDD+  ++  R ANG   K   
Sbjct: 627 HGNGHASSKQEKRTHMPTRPRKEQSSLVPSSPSAEDVDDDDVPAVLPEREANGRVHKASH 686

Query: 500 AEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSL 559
           A  SFG+DG H+                     S R    SQSKG +VN   + L+    
Sbjct: 687 ANNSFGEDG-HQI--------------------STR----SQSKGDDVNGNSNSLA---- 717

Query: 560 GANLGQLKQENHELKKRLEKKE--------GELQEERERCRSLEAQLKVMQQTIEELNKE 611
              L QL++EN ELK+RL++KE        G+L++ERE+C+ LE +L+  +Q IE++NKE
Sbjct: 718 ---LEQLREENCELKERLKRKEGDTVVALRGDLEKEREKCKLLETELQEARQKIEDMNKE 774

Query: 612 QESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRAGR 666
           Q+SLIDIF+EERDRR+ EEENLRKK+++AS+TIQ+LL+++++LEKMKTP+ ++ R
Sbjct: 775 QDSLIDIFSEERDRRDIEEENLRKKLREASNTIQELLERVRVLEKMKTPNGKSER 829

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491569|ref|XP_002280533.2| PREDICTED: uncharacterized protein LOC100266246 [Vitis vinifera]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 495/655 (75%), Gaps = 51/655 (7%)

Query: 30   ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
            +   DNGGGM+P+KMR CMSLGYSAKSK ANTIGQYGNGFKTSTMRLGADVIVFS CCGK
Sbjct: 1612 LLIEDNGGGMDPEKMRQCMSLGYSAKSKIANTIGQYGNGFKTSTMRLGADVIVFSRCCGK 1671

Query: 90   DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
            DGKSPT+SIGLLSYTFLRSTGKEDIVVPM+DYE   +EW K+IRSS  DWN+NVETI+QW
Sbjct: 1672 DGKSPTQSIGLLSYTFLRSTGKEDIVVPMIDYEKGGREWNKMIRSSASDWNKNVETIMQW 1731

Query: 150  SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
            SPFSSE DLL QFN +K+HGTRIIIYNLWEDD G LELDFD+D  DIQ+RGVNRDE+NI+
Sbjct: 1732 SPFSSELDLLRQFNFIKEHGTRIIIYNLWEDDPGQLELDFDTDPKDIQIRGVNRDEKNIQ 1791

Query: 210  MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
            MA+ +PNSRHFLTYRHSLRSYASILYLRLPPGFRII+RGKDVEHHN+VNDMM++++VTYR
Sbjct: 1792 MAKQFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGKDVEHHNVVNDMMMTQEVTYR 1851

Query: 270  PQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRG 329
            PQP A G+P DL+M   VTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNA+GSDGRG
Sbjct: 1852 PQPSADGVPKDLNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAAGSDGRG 1911

Query: 330  VIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 389
            VIGVLEANFVEPAHDKQGFERT VL+RLE RL+QMQK YW   CH+IGYAPRR KK I +
Sbjct: 1912 VIGVLEANFVEPAHDKQGFERTIVLSRLETRLLQMQKTYWTTYCHKIGYAPRRNKKLINE 1971

Query: 390  SYDREIS----------SKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYG 439
            S  RE S           KK   +    T  S+ DKH  HSN +  G++ +R PE     
Sbjct: 1972 S-ARETSPDYLPQTPSQPKKKVGASSGKTPLSNLDKHASHSNHKQGGRELERTPETVYQS 2030

Query: 440  DRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILA 499
               GH SSK + +   P + R+  S   P SPSAED  DDD+  ++  R ANG   K   
Sbjct: 2031 HGNGHASSKQEKRTHMPTRPRKEQSSLVPSSPSAEDVDDDDVPAVLPEREANGRVHKASH 2090

Query: 500  AEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSL 559
            A  SFG+DG H+                     S R    SQSKG +VN   + L+    
Sbjct: 2091 ANNSFGEDG-HQI--------------------STR----SQSKGDDVNGNSNSLA---- 2121

Query: 560  GANLGQLKQENHELKKRLEKKE--------GELQEERERCRSLEAQLKVMQQTIEELNKE 611
               L QL++EN ELK+RL++KE        G+L++ERE+C+ LE +L+  +Q IE++NKE
Sbjct: 2122 ---LEQLREENCELKERLKRKEGDTVVALRGDLEKEREKCKLLETELQEARQKIEDMNKE 2178

Query: 612  QESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRAGR 666
            Q+SLIDIF+EERDRR+ EEENLRKK+++AS+TIQ+LL+++++LEKMKTP+ ++ R
Sbjct: 2179 QDSLIDIFSEERDRRDIEEENLRKKLREASNTIQELLERVRVLEKMKTPNGKSER 2233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119746|ref|XP_002318152.1| predicted protein [Populus trichocarpa] gi|222858825|gb|EEE96372.1| predicted protein [Populus trichocarpa]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/616 (64%), Positives = 468/616 (75%), Gaps = 16/616 (2%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           +   DNGGGM+PDK+R CMSLGYSAKSK ANTIGQYGNGFKTSTMRLGADVIVFS C GK
Sbjct: 209 LLIEDNGGGMDPDKLRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCQGK 268

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
           DGK PT+SIGLLSYTFLRSTGKEDIVVPMLDYE   +EW ++ RSS  DWNRNVETIV W
Sbjct: 269 DGKFPTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGREWSRMGRSSTGDWNRNVETIVHW 328

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SPFSSEADLL QF LM DHGTRIIIYNLWEDDQG+LELDFDSD HDIQLRGVNRDE++I+
Sbjct: 329 SPFSSEADLLRQFKLMSDHGTRIIIYNLWEDDQGMLELDFDSDPHDIQLRGVNRDEKHIQ 388

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA+ +PNSRHFLTYRHSLR+Y SILYLRLPP FRII+RGKDVEHHNIVNDMMLS+++TYR
Sbjct: 389 MAKEFPNSRHFLTYRHSLRNYTSILYLRLPPSFRIILRGKDVEHHNIVNDMMLSQEITYR 448

Query: 270 PQPGASGIPTDLH-MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGR 328
           PQPGA  +P D + M   VTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNA+GSDGR
Sbjct: 449 PQPGADSVPKDTNQMTAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAAGSDGR 508

Query: 329 GVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIK 388
           GVIGVLEANF+EPAHDKQGFERTTVLARLEARL+QMQK YW  +C  + Y    ++ ++ 
Sbjct: 509 GVIGVLEANFIEPAHDKQGFERTTVLARLEARLVQMQKHYW--HCLLLLYT--SFESFLI 564

Query: 389 DSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSK 448
                 IS K  +P+     D       Q  S +++    SK  P  SN G   G+  +K
Sbjct: 565 TPL--LISHKVVFPNEENSPDDLPPTSSQ--SKKKYTSLSSKISPSHSNRGYVSGNAFNK 620

Query: 449 GKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDG 508
           G  + KTP    +    S P  P+ +++S+DD HV +  R ANGS+Q+     KSF K+G
Sbjct: 621 GNIRTKTPTNLGKNTVSSGPSPPAQDESSEDDEHVALPMREANGSAQETTPTNKSFDKNG 680

Query: 509 LHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQ 568
           L +T  S+ L DS SQQD  SGG++V+    SQ K  +V+  +H L +  +   L  LKQ
Sbjct: 681 LPKTWSSSYLEDSGSQQDCMSGGATVQIGTRSQPKVGDVDKRDHALPESDMHV-LAHLKQ 739

Query: 569 ENHELKKRLEKKEGELQEER------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           EN ELK+RL+K EGE Q +       E+C+SLE QL+  QQ +EELNKEQESLIDIF+EE
Sbjct: 740 ENRELKERLQKLEGETQGKYMSGFQCEKCKSLEIQLQEAQQKLEELNKEQESLIDIFSEE 799

Query: 623 RDRREREEENLRKKIK 638
           RDRR++EEE+LRKK+K
Sbjct: 800 RDRRDQEEESLRKKLK 815

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527801|ref|XP_003532495.1| PREDICTED: uncharacterized protein LOC100816702 [Glycine max]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/644 (60%), Positives = 470/644 (72%), Gaps = 54/644 (8%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           +   DNGGGM+P+KMR CMSLGYS KSK ANTIGQYGNGFKTSTMRLGADVIVFS   GK
Sbjct: 205 LLVEDNGGGMDPEKMRQCMSLGYSMKSKMANTIGQYGNGFKTSTMRLGADVIVFSRYPGK 264

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
           DGKS T+SIGLLSYTFLRSTGKEDIVVPMLDYE   QEW KIIR+SLDDWN+NVETIVQW
Sbjct: 265 DGKSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRGQEWNKIIRTSLDDWNKNVETIVQW 324

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SPFS+EADLL QFNL+KDHGTR+IIYNLWEDDQG LELDFD D HDIQ+RGVNRDE+NI+
Sbjct: 325 SPFSNEADLLLQFNLVKDHGTRVIIYNLWEDDQGQLELDFDEDPHDIQIRGVNRDEKNIQ 384

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           M++ +PNSRHFLTYRHSLRSY SILYLRLP GFRII+RGKD+ HHNIVNDMM+S++VTYR
Sbjct: 385 MSKEFPNSRHFLTYRHSLRSYTSILYLRLPSGFRIILRGKDILHHNIVNDMMMSQEVTYR 444

Query: 270 PQPGASG-IPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGR 328
           PQ G  G +P D +M   VTIGFVKDA HH+DV GFNVYHKNRLIKPFWR+WN +GS GR
Sbjct: 445 PQAGVDGLLPKDSNMVAVVTIGFVKDAVHHVDVSGFNVYHKNRLIKPFWRIWNPAGSGGR 504

Query: 329 GVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIK 388
           GVIGVLEANFVEPAHDKQGFERT VL+RLE++LIQMQK YW+ NCH+IGYA  R K  I+
Sbjct: 505 GVIGVLEANFVEPAHDKQGFERTLVLSRLESKLIQMQKKYWSTNCHKIGYASNRSKIQIR 564

Query: 389 DSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASN----YGDRKGH 444
           D  D+E +S   +P      +SS S +       ++   D K  P  S+    + D+K  
Sbjct: 565 DYADKE-ASPDYFP------ESSQSKR-------KYSTMDDKATPLTSDKLRSHSDQKRI 610

Query: 445 ESSKGKYKMKTPVKYREGASVSEP----LSPSAEDASDDDMHVMVTARGANGSSQKILAA 500
           +    KY     + Y+ G S   P     S S + +SDD++  ++  +     +QKI  A
Sbjct: 611 QKQTDKY-----IAYKNGQSSVSPRRRMQSLSEQSSSDDEVSEVLPKK----KTQKISTA 661

Query: 501 EKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLG 560
           EKSF K+       + C       QD  S G S +    S+ +G  VN  E   SD  L 
Sbjct: 662 EKSFEKE-------NGC------SQDTTSRGKSSQYTRGSKLEGKSVNDGEQPPSDNDL- 707

Query: 561 ANLGQLKQENHELKKRLEKKE--------GELQEERERCRSLEAQLKVMQQTIEELNKEQ 612
             L QLK+EN ELK+RL++KE         +LQ E++RC+SLE QL   ++ +EELN EQ
Sbjct: 708 LTLEQLKKENRELKERLQRKEEDILGQVLQDLQHEKDRCKSLETQLIDAEKKLEELNNEQ 767

Query: 613 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           E+LID+FAEERDRR+ EE+ LR K+++AS+TI++LLDK + LE+
Sbjct: 768 ETLIDVFAEERDRRDAEEKKLRNKLEEASNTIRELLDKTRKLER 811

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440961|ref|XP_004138252.1| PREDICTED: uncharacterized protein LOC101222073 [Cucumis sativus]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/644 (63%), Positives = 480/644 (74%), Gaps = 44/644 (6%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           +   DNGGGM+P+KMRHCMSLGYS K+K A+TIGQYGNGFKTSTMRLGADVIVFS CCG+
Sbjct: 207 LLIEDNGGGMSPEKMRHCMSLGYSEKTKLADTIGQYGNGFKTSTMRLGADVIVFSRCCGQ 266

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
            GKS T+SIGLLSYTFLRSTGKEDIVVPMLDYE    EW KI+RSSL+DWN+NV+T+VQW
Sbjct: 267 YGKSGTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGGEWVKIVRSSLNDWNKNVDTVVQW 326

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SPF++EA+LL QF +MKDHGTRIIIYNLWEDDQG LELDFD+D HDIQ+RGVNRDE++I+
Sbjct: 327 SPFANEAELLRQFYMMKDHGTRIIIYNLWEDDQGQLELDFDTDPHDIQIRGVNRDEKSIQ 386

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA+ +PNSRHFLTYRHSLRSYASILYLRLPP FRII+RG+DVEHHNIVNDMM+S++VTYR
Sbjct: 387 MAKKFPNSRHFLTYRHSLRSYASILYLRLPPCFRIILRGRDVEHHNIVNDMMISQEVTYR 446

Query: 270 PQPGASGIPT------DLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAS 323
           PQPGA G  T       + M   VTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAS
Sbjct: 447 PQPGADGAGTVGKDTNVILMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAS 506

Query: 324 GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRY 383
           GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQK YW + CH+IGYAPRR 
Sbjct: 507 GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWCSYCHKIGYAPRRI 566

Query: 384 KKYIKDSYDREIS----SKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYG 439
            K    + DRE S    S +  P   K + S    K     ++ + GK++++  +  ++ 
Sbjct: 567 DKPNSRTPDRESSPDDYSSQPPPQSKKKSTSFGGTK----PDKIYLGKETEKFQKTKDF- 621

Query: 440 DRKGH-ESSKGKYKMKTP--VKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQK 496
            R G+  SSK K    TP   K R   S SEP SPS  +   D+ H       ANG+   
Sbjct: 622 -RYGNMHSSKEKNGSMTPDSEKSRTRPSSSEPPSPSGLEVRVDNHH----GGQANGTGN- 675

Query: 497 ILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSD 556
               E   G D   R   S+    S++QQ G            ++ KG + N  E   S 
Sbjct: 676 ----ETFHGNDVSMRMKASSNGGVSQAQQGGL-----------AKPKGGDTNDSERSPSS 720

Query: 557 CSLGANLGQLKQENHELKKRLEKKE---GELQEERE-RCRSLEAQLKVMQQTIEELNKEQ 612
             L   L QLK+EN ELK+RL++KE   G+LQ+ERE RC+SLE+QL   +  IEEL+KEQ
Sbjct: 721 SDLHM-LQQLKEENEELKERLKRKEADHGKLQDERERRCKSLESQLTAAELKIEELSKEQ 779

Query: 613 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           ESLIDIF+EERDRRE EE NLRKK+K+AS+TIQ+LLDKI++LEK
Sbjct: 780 ESLIDIFSEERDRRETEEHNLRKKLKEASNTIQELLDKIQILEK 823

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501464|ref|XP_004161374.1| PREDICTED: uncharacterized LOC101222073 [Cucumis sativus]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/637 (60%), Positives = 452/637 (70%), Gaps = 60/637 (9%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           +   DNGGGM+P+KMRHCMSLGYS K+K A+TIGQYGNGFKTSTMRLGADVIVFS CCG+
Sbjct: 207 LLIEDNGGGMSPEKMRHCMSLGYSEKTKLADTIGQYGNGFKTSTMRLGADVIVFSRCCGQ 266

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
            GKS T+SIGLLSYTFLRSTGKEDIVVPMLDYE    EW KI+RSSL+DWN+NV+T+VQW
Sbjct: 267 YGKSGTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGGEWVKIVRSSLNDWNKNVDTVVQW 326

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SPF++EA+LL QF +MKDHGTRIIIYNLWEDDQG LELDFD+D HDIQ+RGVNRDE++I+
Sbjct: 327 SPFANEAELLRQFYMMKDHGTRIIIYNLWEDDQGQLELDFDTDPHDIQIRGVNRDEKSIQ 386

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA+ +PNSRHFLTYRHSLRSYASILYLRLPP FRII+RG+DVEHHNIVNDMM+S++VTYR
Sbjct: 387 MAKKFPNSRHFLTYRHSLRSYASILYLRLPPCFRIILRGRDVEHHNIVNDMMISQEVTYR 446

Query: 270 PQPGASGIPTD------LHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAS 323
           PQPGA G  T       + M   VTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAS
Sbjct: 447 PQPGADGAGTVGKDTNVILMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAS 506

Query: 324 GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRY 383
           GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQK YW + CH+IGYAPRR 
Sbjct: 507 GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWCSYCHKIGYAPRRI 566

Query: 384 KKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKG 443
                D  +     ++S P  +       S +  L    R         P++     R  
Sbjct: 567 -----DKPNSRTPDRESSPDDYSSQPPPQSKRRVLPLVGR---NPINMTPDSEKSRTRPS 618

Query: 444 HESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKS 503
                    ++  V    G                           ANG+       E  
Sbjct: 619 SSEPPSPSGLEVRVDNHHGGQ-------------------------ANGTGN-----ETF 648

Query: 504 FGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANL 563
            G D   R   S+    S++QQ G +           + KG + N  E   S   L   L
Sbjct: 649 HGNDVSMRMKASSNGGVSQAQQGGLA-----------KPKGGDTNDSERSPSSSDLHM-L 696

Query: 564 GQLKQENHELKKRLEKKE---GELQEERER-CRSLEAQLKVMQQTIEELNKEQESLIDIF 619
            QLK+EN ELK+RL++KE   G+LQ+ERER C+SLE+QL   +  IEEL+KEQESLIDIF
Sbjct: 697 QQLKEENEELKERLKRKEADHGKLQDERERRCKSLESQLTAAELKIEELSKEQESLIDIF 756

Query: 620 AEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           +EERDRRE EE NLRKK+K+AS+TIQ+LLDKI++LEK
Sbjct: 757 SEERDRRETEEHNLRKKLKEASNTIQELLDKIQILEK 793

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792383|ref|XP_002864076.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata] gi|297309911|gb|EFH40335.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/625 (57%), Positives = 433/625 (69%), Gaps = 65/625 (10%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           +   D+GGGMNP+KMRHCMSLGYSAKSK A+TIGQYGNGFKTSTMRLGADVIVFS C GK
Sbjct: 208 VVIEDDGGGMNPEKMRHCMSLGYSAKSKLADTIGQYGNGFKTSTMRLGADVIVFSRCLGK 267

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
           DGKS T+SIGLLSYTFL+STGKEDIVVPMLDYE    EW  I RSS+ DW +NVETIVQW
Sbjct: 268 DGKSSTQSIGLLSYTFLKSTGKEDIVVPMLDYERRDSEWCPITRSSVSDWEKNVETIVQW 327

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SPF +E DLL QFNL+K HGTRIIIYNLWEDDQG+LELDFD+D HDIQLRGVNRDE+NI 
Sbjct: 328 SPFPTEEDLLRQFNLVKKHGTRIIIYNLWEDDQGMLELDFDTDPHDIQLRGVNRDEKNID 387

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA  +PNSRH+LTY+HSLRSYASILYL++P  FRII+RGKDVEHHNIVNDMM ++K+TYR
Sbjct: 388 MASQFPNSRHYLTYKHSLRSYASILYLKIPREFRIILRGKDVEHHNIVNDMMQTEKITYR 447

Query: 270 PQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRG 329
           P+ GA G     +++  VTIGFVKDAKHH+DVQGFNVYHKNRLIKPFWR+WNA+GSDGRG
Sbjct: 448 PKEGADGCAKYSNLSAVVTIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRIWNAAGSDGRG 507

Query: 330 VIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 389
           VIGVLEANFVEPAHDKQGFERTTVL+RLEARL+QMQK+YW +NCH+IGYA R+ KK +KD
Sbjct: 508 VIGVLEANFVEPAHDKQGFERTTVLSRLEARLLQMQKNYWRSNCHKIGYASRQGKKSVKD 567

Query: 390 SYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKG 449
           + DRE SS +  P R   +DSS                             RK +  S  
Sbjct: 568 TEDRE-SSPEYDPKR---SDSS-----------------------------RKRNAPSSF 594

Query: 450 KYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKS------ 503
           K     P  Y    + SE  +  +        +V+   +G+   S+ I            
Sbjct: 595 KTPTAAP-NYNTPTAASEKFNTRS--------NVIRGGKGSLKDSKDIGYKSSGKGGGKL 645

Query: 504 ---FGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLG 560
              F K    R  P        +  D     S  R       K SE+  P+      S  
Sbjct: 646 GNSFSKSD-KRVKPQLARAVEVTNSDDDYDSSPERNVTELPEKISELPKPQ------SGS 698

Query: 561 ANLGQLKQENHELKKRLEKKE-------GELQEERERCRSLEAQLKVMQQTIEELNKEQE 613
             L QL+QEN+EL+ RL KKE        +L+ E+E  ++LEA+++ ++  +EE++KEQ 
Sbjct: 699 RTLSQLEQENNELRDRLNKKEEVFLLLQKDLRREKELRKTLEAEVQTLKYKLEEMDKEQA 758

Query: 614 SLIDIFAEERDRREREEENLRKKIK 638
           SLID+FAE+RDRR++EEENLR K++
Sbjct: 759 SLIDVFAEDRDRRDKEEENLRIKLE 783

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256429|ref|NP_199891.4| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana] gi|332008608|gb|AED95991.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/649 (55%), Positives = 445/649 (68%), Gaps = 71/649 (10%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           I   DNGGGMNP+KMRHCMSLGYSAKSK A+TIGQYGNGFKTSTMRLGADVIVFS C GK
Sbjct: 207 ILIEDNGGGMNPEKMRHCMSLGYSAKSKLADTIGQYGNGFKTSTMRLGADVIVFSRCLGK 266

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
           DGKS T+SIGLLSYTFL+STGKEDIVVPMLDYE    EW  I RSS+ DW +NVET+VQW
Sbjct: 267 DGKSSTQSIGLLSYTFLKSTGKEDIVVPMLDYERRDSEWCPITRSSVSDWEKNVETVVQW 326

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SP+++E +LL QFNLMK HGTRIIIYNLWEDD+G+LELDFD+D HDIQLRGVNRD++NI 
Sbjct: 327 SPYATEEELLCQFNLMKKHGTRIIIYNLWEDDEGMLELDFDTDPHDIQLRGVNRDDKNIV 386

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA  +PNSRH+LTY+HSLRSYASILYL++   FRII+RGKDVEHHNIVNDMM ++K+TYR
Sbjct: 387 MASQFPNSRHYLTYKHSLRSYASILYLKISHEFRIILRGKDVEHHNIVNDMMQTEKITYR 446

Query: 270 PQPGASGIP--TDLH-------------MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK 314
           P+  A G    ++L+             ++  VTIGFVKDAKHH+DVQGFNVYHKNRLIK
Sbjct: 447 PKEAADGCAKYSNLYNLKIWLLVLHVSQLSAVVTIGFVKDAKHHVDVQGFNVYHKNRLIK 506

Query: 315 PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCH 374
           PFWR+WNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVL+RLEARL+ MQKDYW + CH
Sbjct: 507 PFWRIWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLSRLEARLLHMQKDYWRSKCH 566

Query: 375 EIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPE 434
           +IGYA R+ +K  KD                  T+    D+                  E
Sbjct: 567 KIGYAKRQGRKSAKD------------------TEKDTEDR------------------E 590

Query: 435 ASNYGDRKGHESSKGKY---KMKTPV---KYREGASVSEPLSPSAEDASDDDMHVMVTAR 488
           +S   D KG  SS+ +      KTP    ++    + SE  +P +         V V+  
Sbjct: 591 SSPEFDPKGSASSRKRTVPSSFKTPTAAPRFNTPTAASEKFNPRSNVNGGGKGSVKVSKD 650

Query: 489 GANGSSQKILAAEKSFGKDGLHRTHPSACLVD-SESQQDGASGGSSVRPFMPSQSKGSEV 547
               SS+K      SF K         A  V+ + S  D     S  R       K SE+
Sbjct: 651 IGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPERNVTELPGKSSEL 710

Query: 548 NYPEHFLSDCSLGANLGQLKQENHELKKRLEKKE-------GELQEERERCRSLEAQLKV 600
             P+      S    L QL+QEN+EL++RL+KKE        +L+ ERE  ++LEA+++ 
Sbjct: 711 PKPQ------SGPRTLSQLEQENNELRERLDKKEEVFLLLQKDLRRERELRKTLEAEVET 764

Query: 601 MQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD 649
           ++  ++E++KEQ SLID+FAE+RDRR++EEENLR K+++AS+TIQ L+D
Sbjct: 765 LKNKLKEMDKEQASLIDVFAEDRDRRDKEEENLRIKLEEASNTIQKLID 813

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9757986|dbj|BAA96991.2| unnamed protein product [Arabidopsis thaliana]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/638 (55%), Positives = 435/638 (68%), Gaps = 71/638 (11%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
           I   DNGGGMNP+KMRHCMSLGYSAKSK A+TIGQYGNGFKTSTMRLGADVIVFS C GK
Sbjct: 207 ILIEDNGGGMNPEKMRHCMSLGYSAKSKLADTIGQYGNGFKTSTMRLGADVIVFSRCLGK 266

Query: 90  DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
           DGKS T+SIGLLSYTFL+STGKEDIVVPMLDYE    EW  I RSS+ DW +NVET+VQW
Sbjct: 267 DGKSSTQSIGLLSYTFLKSTGKEDIVVPMLDYERRDSEWCPITRSSVSDWEKNVETVVQW 326

Query: 150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
           SP+++E +LL QFNLMK HGTRIIIYNLWEDD+G+LELDFD+D HDIQLRGVNRD++NI 
Sbjct: 327 SPYATEEELLCQFNLMKKHGTRIIIYNLWEDDEGMLELDFDTDPHDIQLRGVNRDDKNIV 386

Query: 210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
           MA  +PNSRH+LTY+HSLRSYASILYL++   FRII+RGKDVEHHNIVNDMM ++K+TYR
Sbjct: 387 MASQFPNSRHYLTYKHSLRSYASILYLKISHEFRIILRGKDVEHHNIVNDMMQTEKITYR 446

Query: 270 PQPGASGIP--TDLH-------------MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK 314
           P+  A G    ++L+             ++  VTIGFVKDAKHH+DVQGFNVYHKNRLIK
Sbjct: 447 PKEAADGCAKYSNLYNLKIWLLVLHVSQLSAVVTIGFVKDAKHHVDVQGFNVYHKNRLIK 506

Query: 315 PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCH 374
           PFWR+WNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVL+RLEARL+ MQKDYW + CH
Sbjct: 507 PFWRIWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLSRLEARLLHMQKDYWRSKCH 566

Query: 375 EIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPE 434
           +IGYA R+ +K  KD                  T+    D+                  E
Sbjct: 567 KIGYAKRQGRKSAKD------------------TEKDTEDR------------------E 590

Query: 435 ASNYGDRKGHESSKGKY---KMKTPV---KYREGASVSEPLSPSAEDASDDDMHVMVTAR 488
           +S   D KG  SS+ +      KTP    ++    + SE  +P +         V V+  
Sbjct: 591 SSPEFDPKGSASSRKRTVPSSFKTPTAAPRFNTPTAASEKFNPRSNVNGGGKGSVKVSKD 650

Query: 489 GANGSSQKILAAEKSFGKDGLHRTHPSACLVD-SESQQDGASGGSSVRPFMPSQSKGSEV 547
               SS+K      SF K         A  V+ + S  D     S  R       K SE+
Sbjct: 651 IGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPERNVTELPGKSSEL 710

Query: 548 NYPEHFLSDCSLGANLGQLKQENHELKKRLEKKE-------GELQEERERCRSLEAQLKV 600
             P+      S    L QL+QEN+EL++RL+KKE        +L+ ERE  ++LEA+++ 
Sbjct: 711 PKPQ------SGPRTLSQLEQENNELRERLDKKEEVFLLLQKDLRRERELRKTLEAEVET 764

Query: 601 MQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638
           ++  ++E++KEQ SLID+FAE+RDRR++EEENLR K++
Sbjct: 765 LKNKLKEMDKEQASLIDVFAEDRDRRDKEEENLRIKLE 802

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	666
TAIR|locus:2117358	707	AT4G24970 [Arabidopsis thalian	0.599	0.564	0.737	8.3e-177
TAIR|locus:2163320	819	AT5G50780 [Arabidopsis thalian	0.558	0.454	0.726	1.5e-166
TAIR|locus:2179837	708	AT5G13130 [Arabidopsis thalian	0.534	0.502	0.652	1.5e-138
TAIR|locus:2122264	635	CRT1 "compromised recognition	0.510	0.535	0.508	1.1e-91
TAIR|locus:2122254	626	CRH1 "CRT1 Homologue 1" [Arabi	0.509	0.541	0.498	2.9e-87
TAIR|locus:2011226	663	DMS11 "DEFECTIVE IN MERISTEM S	0.493	0.496	0.510	3.9e-83
TAIR|locus:2122244	486	AT4G36270 "AT4G36270" [Arabido	0.483	0.662	0.446	7.2e-68
ZFIN|ZDB-GENE-060929-544	422	zgc:152774 "zgc:152774" [Danio	0.519	0.819	0.328	1.9e-44
ZFIN|ZDB-GENE-030131-1502	1079	morc3a "MORC family CW-type zi	0.486	0.300	0.348	7.1e-44
ZFIN|ZDB-GENE-040801-98	763	morc3b "MORC family CW-type zi	0.267	0.233	0.343	7.4e-35

TAIR|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1583 (562.3 bits), Expect = 8.3e-177, Sum P(2) = 8.3e-177
 Identities = 301/408 (73%), Positives = 342/408 (83%)

Query:    34 DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKS 93
             DNGGGM+P+KMR CMSLGYSAKSK ANTIGQYGNGFKTSTMRLGADVIVFS C GKDGKS
Sbjct:   220 DNGGGMDPEKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCPGKDGKS 279

Query:    94 PTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFS 153
              T+SIGLLSYTFLRSTGKEDIVVPMLDYE    EW KIIRSS  DW++NVETI+QWSPFS
Sbjct:   280 STQSIGLLSYTFLRSTGKEDIVVPMLDYERRDPEWSKIIRSSTRDWDKNVETIIQWSPFS 339

Query:   154 SEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQH 213
             SE DLLHQF+LMKD GTRIIIYNLWEDDQG+LELDFD+D +DIQLRGVNR+E+NIKMA  
Sbjct:   340 SEEDLLHQFDLMKDRGTRIIIYNLWEDDQGMLELDFDADPYDIQLRGVNREERNIKMASQ 399

Query:   214 YPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPG 273
             +PNSRHFLTY+HSLRSY SILYLR+PPGFRII+RG DVEHH++VNDMM ++++TYRPQ  
Sbjct:   400 FPNSRHFLTYKHSLRSYVSILYLRIPPGFRIILRGIDVEHHSVVNDMMQTEQITYRPQSE 459

Query:   274 ASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGV 333
             + G+ T+  M+  V IGFVKDAKHH+DVQGFNVYHKNRLIKPFWR+WNA+GSDGRGVIGV
Sbjct:   460 SYGVVTN--MSAIVIIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRIWNATGSDGRGVIGV 517

Query:   334 LEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKK--YIKDSY 391
             LEANFVEPAHDKQGFERTTVLARLE+RL+QMQK YW+ NCH+IGYAPRR +K  Y  D+ 
Sbjct:   518 LEANFVEPAHDKQGFERTTVLARLESRLVQMQKTYWSTNCHKIGYAPRRREKSAYGYDNR 577

Query:   392 DREISSKKSYPSRHKI----TDSSHSDKHQLHSNQRW-EGKDSKRLPE 434
             D    + +  PS  K     +D  +S  +  H+      GKD  RL E
Sbjct:   578 DSSPENDREGPSSIKTPTPASDKFYSSSYPNHNGDNGVSGKDGARLQE 625

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)]

 Score = 1496 (531.7 bits), Expect = 1.5e-166, Sum P(2) = 1.5e-166
 Identities = 282/388 (72%), Positives = 325/388 (83%)

Query:    30 ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
             I   DNGGGMNP+KMRHCMSLGYSAKSK A+TIGQYGNGFKTSTMRLGADVIVFS C GK
Sbjct:   207 ILIEDNGGGMNPEKMRHCMSLGYSAKSKLADTIGQYGNGFKTSTMRLGADVIVFSRCLGK 266

Query:    90 DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
             DGKS T+SIGLLSYTFL+STGKEDIVVPMLDYE    EW  I RSS+ DW +NVET+VQW
Sbjct:   267 DGKSSTQSIGLLSYTFLKSTGKEDIVVPMLDYERRDSEWCPITRSSVSDWEKNVETVVQW 326

Query:   150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
             SP+++E +LL QFNLMK HGTRIIIYNLWEDD+G+LELDFD+D HDIQLRGVNRD++NI 
Sbjct:   327 SPYATEEELLCQFNLMKKHGTRIIIYNLWEDDEGMLELDFDTDPHDIQLRGVNRDDKNIV 386

Query:   210 MAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
             MA  +PNSRH+LTY+HSLRSYASILYL++   FRII+RGKDVEHHNIVNDMM ++K+TYR
Sbjct:   387 MASQFPNSRHYLTYKHSLRSYASILYLKISHEFRIILRGKDVEHHNIVNDMMQTEKITYR 446

Query:   270 PQPGASGIPTD------------LH---MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK 314
             P+  A G                LH   ++  VTIGFVKDAKHH+DVQGFNVYHKNRLIK
Sbjct:   447 PKEAADGCAKYSNLYNLKIWLLVLHVSQLSAVVTIGFVKDAKHHVDVQGFNVYHKNRLIK 506

Query:   315 PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCH 374
             PFWR+WNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVL+RLEARL+ MQKDYW + CH
Sbjct:   507 PFWRIWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLSRLEARLLHMQKDYWRSKCH 566

Query:   375 EIGYAPRRYKKYIKDSYDREISSKKSYP 402
             +IGYA R+ +K  KD+ +++   ++S P
Sbjct:   567 KIGYAKRQGRKSAKDT-EKDTEDRESSP 593

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)]

 Score = 1294 (460.6 bits), Expect = 1.5e-138, Sum P(2) = 1.5e-138
 Identities = 233/357 (65%), Positives = 289/357 (80%)

Query:    34 DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKS 93
             DNGGGMNP   R C+SLGYS K   AN +GQYGNGFKTSTMRLGAD IVFS   G +G +
Sbjct:   159 DNGGGMNPSTFRECLSLGYSRKRNMANRVGQYGNGFKTSTMRLGADAIVFSRSRGINGNN 218

Query:    94 PTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFS 153
             PT+SIG+LSYTFL  T K + +VP +DYE    +WK+I+ +S ++W  N+ETI++WSP+ 
Sbjct:   219 PTQSIGMLSYTFLYETRKCEAIVPTVDYELVDNKWKEIVYNSTNEWLDNLETILRWSPYL 278

Query:   154 SEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQH 213
             S+ DLL QFN +++ GTRI+IYNLWEDD+G +ELDFD+D HDIQLRGVNRDE+NI MA+ 
Sbjct:   279 SQQDLLDQFNHLEEQGTRIVIYNLWEDDEGKMELDFDTDPHDIQLRGVNRDEKNIDMAKT 338

Query:   214 YPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPG 273
             YPNSRHFLTYRHSLRSYASILYL+ P  FRII+RG+DVEHH++++DMM  ++ TY+P   
Sbjct:   339 YPNSRHFLTYRHSLRSYASILYLKRPDNFRIILRGEDVEHHSVLDDMMKIEEKTYKPMRS 398

Query:   274 ASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGV 333
                 P    M   + +GFVKDA HHID+QGFNVYHKNRLIKPFWR+WNA+GSDGRGVIG+
Sbjct:   399 PEW-PDQEEMVASLKLGFVKDAHHHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGVIGI 457

Query:   334 LEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDS 390
             LEANF++PAH+KQGFERT VLA+LE+RL+  QK+YW++ CHEIGYAPRR +K  + S
Sbjct:   458 LEANFIQPAHNKQGFERTVVLAKLESRLVTHQKNYWSSRCHEIGYAPRRKQKNYESS 514

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 178/350 (50%), Positives = 240/350 (68%)

Query:    30 ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
             + F DNGGGM+P+ +R CMSLGYS+K K+  TIGQYGNGFKTSTMRLGAD +VFS    +
Sbjct:   139 LVFQDNGGGMDPNGIRKCMSLGYSSK-KSNTTIGQYGNGFKTSTMRLGADAMVFSRST-R 196

Query:    90 DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
              GKS T+SIGLLSYTFLR TG++D++VPM+D++ S    + II  S  DW+ N+  +++W
Sbjct:   197 GGKS-TQSIGLLSYTFLRKTGQDDVIVPMIDFDISSDSPQPIIYGSPGDWSTNLNILLKW 255

Query:   150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
             SPFS+  +LL QF  +  HGT++IIYNLW +D+G+ EL FD D  DI+LR  N  +    
Sbjct:   256 SPFSTMVELLQQFEDIGTHGTKVIIYNLWLNDEGIYELSFDDDDVDIRLRDENAQDGKRL 315

Query:   210 MAQHYPNSRHF-LTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTY 268
              A+      H    YRHSLR+Y S+LYL+    F+II+RG  V   NI ++    + + Y
Sbjct:   316 HAKTLEVRSHISYRYRHSLRAYISMLYLKKFKNFKIILRGVSVAQFNIADEFRHPETIMY 375

Query:   269 RPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGR 328
             +PQ  A     D + A  + +GF+K+A   + + GFNVYHKNRLI+PFW++     + G 
Sbjct:   376 KPQAAA----VD-YAATGIKVGFIKEAPK-LPICGFNVYHKNRLIRPFWKVVLEGSTRGN 429

Query:   329 GVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGY 378
             GV+GVLEANF+EPAHDKQ FER+++  RLEARL ++  DYW N+CH  GY
Sbjct:   430 GVMGVLEANFIEPAHDKQDFERSSLFLRLEARLKRITSDYWQNHCHIFGY 479

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IGI

GO:0031935 "regulation of chromatin silencing" evidence=IMP

TAIR|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 175/351 (49%), Positives = 243/351 (69%)

Query:    30 ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89
             + F D+GGGM+P  +R CMSLGYS+K K+  TIGQYGNGFKTSTMRLGAD IVFS    +
Sbjct:   131 LVFQDDGGGMDPAGLRKCMSLGYSSK-KSNTTIGQYGNGFKTSTMRLGADAIVFSRST-R 188

Query:    90 DGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQW 149
              G S T+S+G+LSYTFLR TG++D+ VPM+D + S++  + II  S +DW  N+E +++W
Sbjct:   189 GGTS-TQSVGILSYTFLRKTGQDDVTVPMIDIDISKERPQPIIYGSPEDWAANLEILLKW 247

Query:   150 SPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK 209
             SPFS+E +LL QF  +  HGT++IIYNLW +D+G+ EL FD D+ DI+LR  + ++   +
Sbjct:   248 SPFSTEDELLQQFEDVGTHGTKVIIYNLWLNDEGIYELSFDDDEEDIRLRDESVNDGK-R 306

Query:   210 MAQHYPNSRHFLTY--RHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVT 267
             +       R  ++Y  R+SLR+YAS+LYL+    F+IIIRG  VE  NI +     + + 
Sbjct:   307 LHHKILELRSHISYHLRYSLRAYASMLYLKKFKNFKIIIRGIPVEQFNIADGFRFPEIIK 366

Query:   268 YRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDG 327
             Y+P        T    + ++ IGFVK+A   + + GFNVYHKNRLI+PFW++     S G
Sbjct:   367 YKPHTA-----TTEQASTEIKIGFVKEAPK-LAICGFNVYHKNRLIRPFWKVTMGGDSTG 420

Query:   328 RGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGY 378
              GV+GVLEANF+EPAHDKQ FER+++  RLEARL ++   YW ++CH +GY
Sbjct:   421 HGVVGVLEANFIEPAHDKQDFERSSLFQRLEARLKKIVYSYWYSHCHLLGY 471

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 177/347 (51%), Positives = 239/347 (68%)

Query:    34 DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKS 93
             D+GGGM+P  MRHCM  G+S K K+ + IG+YGNGFKTSTMRLGADVIVFS       ++
Sbjct:   170 DDGGGMDPQAMRHCMGFGFSDK-KSDSAIGRYGNGFKTSTMRLGADVIVFSR--HSKNQT 226

Query:    94 PTRSIGLLSYTFLRSTGKEDIVVPMLDYE--GSQQEWKKIIRSSLDDWNRNVETIVQWSP 151
              T+SIGLLSYT+L  TG + IVVP+LDYE   S  E+K +     + +  ++  +++WSP
Sbjct:   227 LTQSIGLLSYTYLTRTGHDRIVVPILDYEFNASAGEFKTL--QDREHFISSLSILLEWSP 284

Query:   152 FSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMA 211
             FS+EA+LL QF+ +  HGT++IIYN+W +    LELDFDS   DI + G  + +   K+ 
Sbjct:   285 FSTEAELLQQFDDVGPHGTKVIIYNMWLNSDAKLELDFDSVAEDILIEGSIK-KTGSKIV 343

Query:   212 QHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQ 271
               +  SR    + +SLR Y SILYLR+P  F+II+RGK VEHHN+ +D+M  + + Y+PQ
Sbjct:   344 NDHIASR----FSYSLRVYLSILYLRIPETFKIILRGKVVEHHNVADDLMHPQYILYKPQ 399

Query:   272 PGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVI 331
               A+G    L   V  TIGF+K+A   +++ GF VYHKNRLI PFW++ N S S GRGV+
Sbjct:   400 --AAGSEEAL---VVTTIGFLKEAPK-VNLHGFCVYHKNRLIMPFWQVINYSSSRGRGVV 453

Query:   332 GVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGY 378
             GVLEANFVEP H+KQ FE+T +L +LE RL +M  +YW+ +C  IGY
Sbjct:   454 GVLEANFVEPTHNKQDFEKTVLLQKLENRLKEMTVEYWSCHCVLIGY 500

GO:0005634 "nucleus" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0031935 "regulation of chromatin silencing" evidence=IMP

GO:0016887 "ATPase activity" evidence=IDA

GO:0080188 "RNA-directed DNA methylation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 156/349 (44%), Positives = 219/349 (62%)

Query:    39 MNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSI 98
             M+PD +R CMSLGYS+K K+  TIGQYGNGFKTSTMRLGAD IVF+    + GKS T+S+
Sbjct:     1 MDPDGLRKCMSLGYSSK-KSNTTIGQYGNGFKTSTMRLGADDIVFTRST-RGGKS-TQSV 57

Query:    99 GLLSYTFLRSTGKEDIVVPMLDY------EGSQQEWKKIIRSSLDDWNRNVETIVQWSPF 152
             GLLSYTFLR TG++D+VVPM+ Y      + S++  + II  S +DW  ++E I++WSPF
Sbjct:    58 GLLSYTFLRKTGQDDVVVPMIRYAMQIDIDTSKERPQPIIYGSAEDWAASLEIILKWSPF 117

Query:   153 SSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQ 212
             S+E +L  Q +++       + +        L ++     K  I    +N DE   +++ 
Sbjct:   118 STEGELWQQRSVL-------LTFLFPSSTHQLEDIGTHGTKVIIYNLWLN-DEGIYELSF 169

Query:   213 HYPNSRHFL---TYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYR 269
             H  N    L   +   S R+YAS+LYL+    F+II+RG  VE  NI +++ L + + Y 
Sbjct:   170 HDDNEDIRLRDESVHDSKRAYASMLYLKRFNNFKIILRGIPVEQFNIADELRLPETIKYN 229

Query:   270 PQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRG 329
             P       PT+      + +GF+K+A   + V GFNVYHKNRLI+PFW++       G G
Sbjct:   230 PHTTKEKAPTE------IKVGFIKEAPK-LAVCGFNVYHKNRLIRPFWKVTMGGERRGSG 282

Query:   330 VIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGY 378
             V+GVLEANF+EPAHDKQ FER+++  RLEARL ++  +YWN +CH  GY
Sbjct:   283 VVGVLEANFIEPAHDKQDFERSSLFQRLEARLKKIVSNYWNTHCHVFGY 331

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060929-544 zgc:152774 "zgc:152774" [Danio rerio (taxid:7955)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 126/383 (32%), Positives = 204/383 (53%)

Query:    29 CICFADNGGGMNPDKMRHCMSLGYSAK--SKAANT-IGQYGNGFKTSTMRLGADVIVFSC 85
             C+ F DNG GM P K+   +S G++ K  SK+++  IG YGNGFK+ +MRLG D ++F+ 
Sbjct:    62 CLSFTDNGSGMTPSKLHKMLSFGFTEKGSSKSSHQPIGVYGNGFKSGSMRLGRDALIFT- 120

Query:    86 CCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVET 145
                K+G    +S+G+LS +FL++   + ++VP+  +  +QQ    ++    +D   ++  
Sbjct:   121 ---KNGGC--QSVGMLSQSFLQAIKAQAVIVPIAPF--NQQTNALVVT---EDSEASLRA 170

Query:   146 IVQWSPFSSEADLLHQFNLMKDH-GTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRD 204
             I+++S F SE++L  Q + ++   GT+I+I+N+  +     E DFDSD  DI+L  +  +
Sbjct:   171 ILKYSLFQSESELQEQLDSIQGKKGTKILIWNIRRNKDEKPEFDFDSDVEDIRLPEIRSE 230

Query:   205 EQNIKMAQHYPNSRHFLT----YRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDM 260
             +   K  + Y   R   +       SLR+Y SILYL+  P  +II+R + V+   +   +
Sbjct:   231 DMQGKWRRDYYKQRRDTSSTPEMEFSLRAYLSILYLK--PRIQIILRQRKVQTKLVARSL 288

Query:   261 MLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLW 320
              + +   Y+PQ         ++  V +T GF    K H    G  +YHKNRLIK + ++ 
Sbjct:   289 SMIENDVYKPQ--------FINERVKITFGFNGKNKEHF---GIMMYHKNRLIKAYEKVG 337

Query:   321 ---NASGS-DGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEI 376
                 +SG   G GVIGV+E NF++PAH+KQ FE T       A L     DYW     E 
Sbjct:   338 CQIKSSGQRSGVGVIGVIECNFLKPAHNKQDFEYTKEYRLTLAALGLKLNDYWREK-KEK 396

Query:   377 GYAPRRYKKYIKDSYDREISSKK 399
                 R ++   + S + +   KK
Sbjct:   397 KAKERAFQALERKSQEGDTEEKK 419

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 7.1e-44, Sum P(3) = 7.1e-44
 Identities = 126/362 (34%), Positives = 191/362 (52%)

Query:    29 CICFADNGGGMNPDKMRHCMSLGYSAKSKAAN--TIGQYGNGFKTSTMRLGADVIVFSCC 86
             C+ F DNG GM+ DKM   +S G+S K        +G YGNGFK+ +MRLG D IVFS  
Sbjct:    62 CLIFMDNGSGMDNDKMFKMLSFGFSDKETINGHVPVGLYGNGFKSGSMRLGRDAIVFS-- 119

Query:    87 CGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNR--NVE 144
               K+ +S    +GLLS T+L +   E+++VP++ +       K++ +S L +     ++ 
Sbjct:   120 --KNKES--MCVGLLSQTYLEAIQAENVIVPIVSF-------KRVGQSMLPEAQHAASLH 168

Query:   145 TIVQWSPFSSEADLLHQFNLMKDH------GTRIIIYNLWEDDQGLLELDFDSDKHDIQL 198
              I+Q+S F +EA+LL +   +  H      GTRII++NL +   G  E DFD D++DIQ+
Sbjct:   169 DILQYSLFRTEAELLCELKAINAHYANECTGTRIIVWNLRKTSSGKSEFDFDIDRYDIQI 228

Query:   199 RGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVN 258
                  + +  K  Q     +       SLR+Y SILYL+  P  +II+RG+ V+   I  
Sbjct:   229 PAEVYENEKEKYKQPCRTFQSSPESDFSLRAYCSILYLK--PKMQIILRGQKVKTQLISK 286

Query:   259 DMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWR 318
              +    K  Y+P          L+  + +T G+   +K H  V    +YHKNRLIK + R
Sbjct:   287 SLAHIVKDKYKPN--------FLNERIPITFGYNTKSKEHYGVM---MYHKNRLIKAYER 335

Query:   319 LW--NASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEI 376
             +   N +   G GVI V+E NF++P H+KQ F+ T    R    L    ++YW    H+ 
Sbjct:   336 VGCQNRANEKGVGVIAVIECNFLKPTHNKQDFDYTEEYRRTITTLGVKLEEYWKAIRHKK 395

Query:   377 GY 378
             G+
Sbjct:   396 GF 397

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
 Identities = 68/198 (34%), Positives = 105/198 (53%)

Query:    29 CICFADNGGGMNPDKMRHCMSLGYSAKS--KAANTIGQYGNGFKTSTMRLGADVIVFSCC 86
             C+ F DNG G+   K+   +S G+S K   K    +G YGNGFK+ +MRLG D IVF+  
Sbjct:    61 CLSFMDNGQGLTRAKLHKMLSFGFSKKRALKLHIPVGVYGNGFKSGSMRLGKDAIVFTKT 120

Query:    87 CGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETI 146
               KD    T S+GLLS ++L++ G + ++VPM+ +    Q       + ++D   ++  I
Sbjct:   121 --KD----TMSVGLLSQSYLKAIGAQRVLVPMITFRRDGQ-------NQVED-EASLWAI 166

Query:   147 VQWSPFSSEADLLHQFNLMKD---HGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR 203
             +  S F S+ +L  +   +      GTRIII+NL     G  E DF++ K+DI +R    
Sbjct:   167 LTQSLFRSKKELFDELRAISAVGYTGTRIIIWNLHTTTNGETEFDFNTSKYDILIRWNIS 226

Query:   204 DEQNIKMAQHYPNSRHFL 221
             +  N  +A   P S + L
Sbjct:   227 ERSNGDLAM-IPESEYSL 243

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	666
pfam13589	134	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-08
pfam05103	131	pfam05103, DivIVA, DivIVA protein	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	1e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	6e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-05
smart00935	140	smart00935, OmpH, Outer membrane protein (OmpH-lik	3e-05
COG4026	290	COG4026, COG4026, Uncharacterized protein containi	4e-05
COG4026	290	COG4026, COG4026, Uncharacterized protein containi	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	1e-04
pfam11559	149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-04
pfam04156	186	pfam04156, IncA, IncA protein	2e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	2e-04
pfam13514	1118	pfam13514, AAA_27, AAA domain	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
pfam03938	157	pfam03938, OmpH, Outer membrane protein (OmpH-like	3e-04
pfam00038	312	pfam00038, Filament, Intermediate filament protein	3e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	4e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR00414	418	TIGR00414, serS, seryl-tRNA synthetase	5e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-04
pfam04156	186	pfam04156, IncA, IncA protein	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-04
pfam03962	188	pfam03962, Mnd1, Mnd1 family	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
smart00935	140	smart00935, OmpH, Outer membrane protein (OmpH-lik	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
pfam06148	133	pfam06148, COG2, COG (conserved oligomeric Golgi)	0.001
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.001
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	0.001
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	0.001
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
pfam04156	186	pfam04156, IncA, IncA protein	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
COG0172	429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.003
pfam05622	713	pfam05622, HOOK, HOOK protein	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	0.004
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.004
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	0.004
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.004

>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 30  ICFADNGGGMNPDKMRHCMSLGYSAKSKA--ANTIGQYGNGFKTSTMRLGADVIVFSCCC 87
           I   DNGGGM+ +++R+ + LG S+K     + T+G+ G G K +++ LG  + V S   
Sbjct: 35  ISIEDNGGGMSYEELRNALKLGRSSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTS--- 91

Query: 88  GKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLD 120
            K+G+S T ++       +   G+ D+      
Sbjct: 92  KKEGESSTLTL---DLDDIDKEGEWDLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
           SL     +L+QE  EL++ +E+ E +L E  E    LE +L+ +++ +EEL  E+E L D
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877

Query: 618 IFAEERDRREREEENLRK---KIKDASDTIQDLLDKIKLLEKMKT 659
              E  + +E  EE LR+   ++ +  + I+ L ++++ LE    
Sbjct: 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922

Length = 1163

>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL----NKEQESLIDIFA 620
            L +EN ELK+ +E+ E +L+E +E   +L+  L V Q+T EE+     KE E +I    
Sbjct: 36  ALYKENEELKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKEAELII---K 92

Query: 621 EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
           E   + ER   +  ++ K  +    +L  +   L + +
Sbjct: 93  EAEAKAERIVNDANEEAKKLATEYDELK-RQSRLFRTR 129

The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils. Length = 131

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 8e-07
 Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 10/106 (9%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKV-------MQQTIEELNKEQESL 615
           + +L+++   L++ LE+ E EL+E   R  +LE +L+        ++Q IEEL +E E L
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840

Query: 616 ---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
              +D   EE +  E+E E L++++++     ++L D++K LE+ K
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 29/102 (28%), Positives = 53/102 (51%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L   L +L++E  E +K +E+ + EL+E RE    L+ +L  +++ IEEL  E   L +
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
              E  +  E  EE L +  +      ++L ++  LLE+++ 
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Length = 1163

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID-IFAEERDRRE---R 628
            +KR++K E  ++   E    L+ +L+ +++ IE+L  E E     +  + R  RE   R
Sbjct: 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRAR 479

Query: 629 EEEN--LRKKIKDASDTIQDLLDKIKLLEKMK 658
           +     L K++++    +++L  K+  L KM+
Sbjct: 480 DRRIERLEKELEEKKKRVEELERKLAELRKMR 511

Length = 652

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 562 NLGQLKQENHELKKRLE---KKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 618
            L +L++E  EL++ LE       EL+E  E+ +SLE +L+ +++ +E+L  E E L + 
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351

Query: 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
             E     E   + L +++++    ++  L+++K LE+  
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAI 391

Length = 908

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 50.6 bits (122), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
             +G+ K++ +EL   LE+ E EL+++ E   +L  +    ++  EEL +++E L +   
Sbjct: 509 KLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEA---EKLKEELEEKKEKLQEEED 565

Query: 621 EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRA 664
           +  +  E+E    ++ IK+A     +++ +++ L+K    S++A
Sbjct: 566 KLLEEAEKE---AQQAIKEAKKEADEIIKELRQLQKGGYASVKA 606

Length = 782

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL-- 615
            L A L  L +E   L++RLE  E  +     R   LE Q++ + + IE L  E E L  
Sbjct: 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866

Query: 616 --------IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
                   ++    ER   E     LR ++++ S+ +++L  K   L +
Sbjct: 867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA-- 620
           L  L++     ++RLE  E +++E  E   SL A+++ +++ IEEL  E E+L++  A  
Sbjct: 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885

Query: 621 -EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
            E       E E L +++++      +L  +++ L + 
Sbjct: 886 EEALALLRSELEELSEELRELESKRSELRRELEELREK 923

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 567 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI---DIFAEER 623
           ++E ++L K+    EG++ + R R   LE  L+   +  EEL ++ +      +  + ER
Sbjct: 149 QRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAER 208

Query: 624 DRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
           +    +    +++I +    IQ L  K +  +++
Sbjct: 209 NALLAQRAENQQRILELEQDIQTLTQKKQENDRV 242

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESL 615
           L A L +L+ +  EL + L + E +L+E +E   SLEA+L+ ++  +EEL    +E E  
Sbjct: 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380

Query: 616 IDIFAEERDRREREEENLRKKIKDASDTIQDL 647
           ++    +  + E +  +L  +I+     ++ L
Sbjct: 381 LETLRSKVAQLELQIASLNNEIERLEARLERL 412

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L  L++E   L++R E+ E E++E  E    LE +L  +++ +EEL KE E L +   E 
Sbjct: 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEEL 868

Query: 623 RDRREREEENL---RKKIKDASDTIQDLLDKIKLLEK 656
              +E  E+ L    ++ ++  + +++L  ++  L++
Sbjct: 869 EAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Length = 1163

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 47.1 bits (113), Expect = 2e-05
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 12/95 (12%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI---DIFAE 621
           + K+E H+L+   EK      E RER   L+   K + Q  E L+++ E L    +   +
Sbjct: 61  EAKEEIHKLRNEFEK------ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114

Query: 622 ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           +    E++++ L KK ++  + I++ L +   LE+
Sbjct: 115 KEKELEQKQQELEKKEEELEELIEEQLQE---LER 146

Length = 520

>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSL-----EAQLKVMQQTIEELNKEQESLIDIF 619
           QL++E  + +  LEK E ELQ+ +E+ +       EA  +  ++ +++  +E +      
Sbjct: 22  QLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKL 81

Query: 620 AEERDRREREEEN-LRKKIKDASDTI 644
            ++  +R++EE   +  KI  A   +
Sbjct: 82  QQDLQKRQQEELQKILDKINKAIKEV 107

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140

>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L +L++E  EL K LE+ E E +E +ER + LE +   +++ +++L  E   L   + E 
Sbjct: 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203

Query: 623 RDRREREEE 631
               E  EE
Sbjct: 204 EPGVELPEE 212

Length = 290

>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
              LK++  ELK++LE+ + E +E  +    LEA+ + +Q+ ++ L  E   L     E 
Sbjct: 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL----EEM 185

Query: 623 RDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655
             +   E  +L+K+         +L   ++L E
Sbjct: 186 LKKLPGEVYDLKKR-------WDELEPGVELPE 211

Length = 290

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 25/95 (26%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
           +L++E   L++ L K + E++E  E+ ++L+ +L+ +++ +EE  +  ++L         
Sbjct: 762 ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821

Query: 625 RRER---EEENLRKKIKDASDTIQDLLDKIKLLEK 656
           RRER   E E L ++I++  + + +L ++++ LEK
Sbjct: 822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 540 SQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK 599
           ++ +  E    E  L    L   + +L++E + L   + + E + Q  RER  +LE QL+
Sbjct: 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319

Query: 600 VMQQTIEELNKEQESLIDIFAEERDRREREEEN---LRKKIKDASDTIQDLLDKIKLLEK 656
            ++  +EEL  + + L +  AE  ++ E  +E    L  ++++    +++L  +++ LE+
Sbjct: 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 572 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRRER 628
           EL+K LE+ E EL    E    L+ +L+  ++ IEEL  E E L   ++   EE    + 
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295

Query: 629 EEENLRKKIKDASDTIQDLLDKIKLLEK 656
           E E L  +I    + +++L ++++ LE+
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEE 323

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
            L++E  EL+  L +   EL+E +    SLE +L+ + + +E+L +E + L      E +
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELE----AELE 435

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
             + E E L +++++  + +++L D++K LE+
Sbjct: 436 ELQTELEELNEELEELEEQLEELRDRLKELER 467

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 28/94 (29%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L +L++E  EL+ +LEK E EL+  +   RSLE  L+ +++ +EEL ++ E L      E
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEEL----KRE 724

Query: 623 RDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
               E E E L+ ++++  + +++L ++++ L++
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQE 758

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL--- 615
           L   L  L++E  +L+ RLE+ E EL+E  E    L+ +L+ +++ +E L +    L   
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780

Query: 616 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           I+   E+R   + E E L +++++A   +  L  +++ LE+
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
             L +L++E  ELK+ +E+ EGE+   RER   LE +L+ +++ +EEL KE+   +    
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL-KEKIEALKEEL 339

Query: 621 EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRA 664
           EER+    E E L  ++++A + +++ L  +    +    ++R 
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE 383

Length = 1163

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
           +LKQE  E  + LEKK  EL+EE  R     A  +  ++ +E    E  + +    EER+
Sbjct: 41  KLKQEEEE-AQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEERE 99

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIK--LLEKMKTP 660
           ++E E   L++++++A    Q+  ++ +  LLE    P
Sbjct: 100 KKEAETRQLQQELREA----QEAHERARQELLEAAAAP 133

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI----EELNKEQES 614
           L A + +L+     LK +LE  E EL   + + R LE +LK ++Q +    EE+ + +  
Sbjct: 62  LEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQRLKNI 121

Query: 615 LIDI---FAEERDRREREEENLRKKIKD 639
           +      +  E  +R+RE E L++++  
Sbjct: 122 IQQRKTQYNHELKKRDREIEKLKERLLQ 149

This family is found in mammals where it is localised at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. Length = 149

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 45/92 (48%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
            LK+E  E +  LE+ E  L E  E    LE +L  + + +EEL +     +     E  
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
               E E L+++I+   + ++ L ++++ L++
Sbjct: 394 EIRNELEELKREIESLEERLERLSERLEDLKE 425

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L   L +L++E  EL++RLE+ E EL+   E      A+LK   + +EE  +  +  ++
Sbjct: 741 ELEEELEELEEELEELQERLEELEEELESLEEA----LAKLKEEIEELEEKRQALQEELE 796

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
              EE +  ER  + L ++++      + L  +I+ LE+
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 49/93 (52%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
           +LK++   LK+ LE++E  L+E  +    LE   + +++ +  L +E E L +   EE  
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
             E E   +R ++++    I+ L ++++ L + 
Sbjct: 387 ELEAELAEIRNELEELKREIESLEERLERLSER 419

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 22/116 (18%)

Query: 559  LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE----------- 607
            L   L +L+ E  ELK+ +EK    L+E   +   LE +L  +++ +EE           
Sbjct: 889  LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948

Query: 608  -----LNKEQESL--IDIFA-EERDRREREEENLRKKIKD---ASDTIQDLLDKIK 652
                 L +E E+L  +++ A EE +  E   E L+ + +D   A + + ++++++ 
Sbjct: 949  REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L   L  LK E   L+  LE+   +L+E   +   L+ +L  +++ +E+L    E L  
Sbjct: 685 KLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELE- 743

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
              EE +  E E E L++++++  + ++ L + +  L++
Sbjct: 744 ---EELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Length = 1163

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 10/102 (9%)

Query: 565 QLKQENHELKKR---LEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ----ESLID 617
           +L Q+   L ++   LEK+E EL+++ +     + +L+  ++ +EEL +EQ    E +  
Sbjct: 90  RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149

Query: 618 IFAEERDRREREEENLRKKIK-DASDTIQDLLDKIKLLEKMK 658
           + AEE   +E   E + ++ + +A+  I+++ ++ K     K
Sbjct: 150 LTAEE--AKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKK 189

Length = 520

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN- 632
            ++LE+ +GEL E +++   L+ +L+ +++ I EL  E E L +     R+  +  EE  
Sbjct: 71  PQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERL 130

Query: 633 --LRKKIKDASDTIQDLLDKIK 652
             L + IK+ +  +++L   ++
Sbjct: 131 ESLEESIKELAKELRELRQDLR 152

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
             L +L++E  EL+++L + + E QE ++   +LEA+L+ +Q+ +  + +   + I++  
Sbjct: 73  QELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIEL-D 131

Query: 621 EERDRREREEENLRKKIKDASDTIQDLLDKIKL 653
           EE      E   L+++ +      + L +  + 
Sbjct: 132 EENRELREELAELKQENEALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 15/114 (13%)

Query: 541 QSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK- 599
           Q++  E++  E  L+  +    L Q + E    ++ L  +EGE+   RE   +L AQ+  
Sbjct: 269 QAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGP 328

Query: 600 --------------VMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKD 639
                           ++T+ EL K +E+L       RD  E  E  L++    
Sbjct: 329 DADEEAVESLRPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQ 382

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 20/112 (17%)

Query: 564 GQLKQENHELKKRLEKK---EGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
            +L++   +L +   +K   E E+QE +E+   L+ Q+K +++ IE LN ++E L +   
Sbjct: 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871

Query: 621 E-----------------ERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655
           E                 ERD  E +   L +KI++    I+    ++  L+
Sbjct: 872 ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 15/103 (14%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L   L + ++E  EL+K+L+    + +++++  ++L+A+LK +++ ++ L  E E L  
Sbjct: 59  RLVEPLKKAEEEVEELRKKLK----DYEKDKQSLKNLKARLKELEKELKNLKWESEVLEQ 114

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDKIK----LLEK 656
            F    ++ ERE + L  K + A   IQD+  K      LLE+
Sbjct: 115 RF----EKVERERDELYDKFEAA---IQDVQQKTGLKNLLLEQ 150

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
             ++   +L   LE+ E   +  RE    LEA+L  ++  +EEL +E ESL     E  +
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESL----EERLE 414

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           R     E+L++++K+    +++L  +++ L +
Sbjct: 415 RLSERLEDLKEELKELEAELEELQTELEELNE 446

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
           A L + K+   ELK RL + E    E  +       +L+ + + +EE  +          
Sbjct: 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIER--------L 293

Query: 621 EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
           EE +R   E E   + ++   + +++LL+K+K LE+   
Sbjct: 294 EELEREIEELEEELEGLRALLEELEELLEKLKSLEERLE 332

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L   L +L+ E  EL++RLE+ E EL E       LEAQ++ +++ ++ L +  + L  
Sbjct: 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810

Query: 618 IFAEERDRR---EREEENLRKKIKDASDTIQDLLDKIKLLEK 656
                 +         E+L ++I      ++DL ++I+ L +
Sbjct: 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 12/98 (12%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L ++ +E +E+   L +   EL++  +  + LE     +++ IEEL KE ESL      E
Sbjct: 202 LEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESL------E 251

Query: 623 RDRREREEE--NLRKKIKDASDTIQDLLDKIKLLEKMK 658
             +R+ EE+   L ++I++    I++L +K+K L+++K
Sbjct: 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289

Length = 880

>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like)

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSL-----EAQLKVMQQTIEELNKEQESLI-DI 618
           QL++E  +L+  L+KKE ELQ+E ++ +       E   K  QQ +++  +E +      
Sbjct: 39  QLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAA 98

Query: 619 FAEERDRREREEENLRKKIKDASDTI 644
             E + +++   + +  KI  A   +
Sbjct: 99  QQELQQKQQELLQPIYDKIDKAIKEV 124

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157

>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE-ELNKEQESLIDI 618
           G  L   K+E  EL+++++  E ELQ  +++  SLE QL  +++  E EL   Q+++ ++
Sbjct: 208 GDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAELEERYELELADYQDTISEL 267

Query: 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 653
             E +  +      LR+         Q+LLD +KL
Sbjct: 268 EEELQQLKAEMARQLRE--------YQELLD-VKL 293

Length = 312

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 19/113 (16%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
           SL ++LGQLK+EN  L+ +L       Q++++  +S+E +LK    +     K+      
Sbjct: 445 SLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQ------ 498

Query: 618 IFAEERDRREREEENLRKKIKDASDT-----------IQDLLDKIKLLE-KMK 658
             AEE+ R++ EEE   +    A+ +            QDL  +IK LE  +K
Sbjct: 499 -LAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLK 550

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 565 QLKQENHELK---KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621
           Q +QE  EL+   + LE++  EL+EE+ER   L+A+L  ++    E  K +E  +     
Sbjct: 222 QEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELER 281

Query: 622 ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
             +  E + E L +  ++  +  ++L     LLE+++
Sbjct: 282 LLEELEEKIERLEELEREIEELEEELEGLRALLEELE 318

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 618
           L   + +L+++  EL+K L +   EL+E  E    L  +L+ + + I  L K+       
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA----- 736

Query: 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
                 R E E E L ++I   S  + +L  +I+ LE+ 
Sbjct: 737 ------RLEAEVEQLEERIAQLSKELTELEAEIEELEER 769

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 27/101 (26%), Positives = 52/101 (51%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L A +  L++   E ++ LE  E  L +       L A+++ +++ IEE  K ++ L +
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
            +AE ++  E     L +  K+ ++T  +L D  + LEK+K
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 527 GASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQE 586
           GA  G S  P      +G  +           L   L  LK+E   L+  L + E  L E
Sbjct: 653 GAMTGGSRAP------RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDE 706

Query: 587 ERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR---REREEENLRKKIKDASDT 643
             +       ++  +++ IE+L +E+E L +   E  +     E+E EN++ ++K+    
Sbjct: 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766

Query: 644 IQDLLDKIKLLEK 656
           I++L + +  LE+
Sbjct: 767 IEELEEDLHKLEE 779

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 18/92 (19%), Positives = 47/92 (51%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
            L+     +K+ L+ +   +  + E+  +L+ + K +   IEEL  ++  L     + + 
Sbjct: 6   LLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKG 65

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           +++ + E ++K++K+  + + +L   +K LE 
Sbjct: 66  QKKDKIEEIKKELKELKEELTELSAALKALEA 97

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model [Protein synthesis, tRNA aminoacylation]. Length = 418

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 22/96 (22%), Positives = 47/96 (48%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
           A   +LK+     + + E++E EL++E E      A+L+  ++ +EEL      +  +  
Sbjct: 207 ALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLEL 266

Query: 621 EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           E    RE E   L + +++  + I+ L +  + +E+
Sbjct: 267 EALKIREEELRELERLLEELEEKIERLEELEREIEE 302

Length = 908

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERE-------RCRSLEAQLKVMQQTIEELNKEQESL 615
           L  L++   EL+  LE  + +LQ  RE       R  SLE  +K + + + EL ++    
Sbjct: 95  LEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLREE 154

Query: 616 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 651
           ++   EE +R +   + L++ I++    +Q LL+++
Sbjct: 155 VEELREELERLQENLQRLQEAIQE----LQSLLEQL 186

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L +LK+E +ELK+ L++ + ELQ   E    L A +  ++  I EL +E+E       ++
Sbjct: 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453

Query: 623 RDRREREEENL---RKKIKDASDTIQDLLDKIKLLEK 656
             + E+   +L    +++ D  +    +  ++  L++
Sbjct: 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 9/100 (9%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEE-----RERCRSLEAQLKVMQQTIEELNK---EQ 612
             L + ++   EL+K LE+ E +  EE     RE    L  +L  ++  +EEL K   E 
Sbjct: 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEI 692

Query: 613 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652
           +  ++   EE + RE+ ++ L +K++ A + +++L +K+K
Sbjct: 693 KKTLEKLKEELEEREKAKKEL-EKLEKALERVEELREKVK 731

Length = 880

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 24/87 (27%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 568 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 627
           Q  ++LK RLEK + EL+E ++R   L+AQ++ +++  EE  +E+  L++   +     +
Sbjct: 62  QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREE-TEERTELLEELKQLEKELK 120

Query: 628 REEENLRKKIKDASDTIQDLLDKIKLL 654
           + +  L K  K+  + I+ L ++ K+ 
Sbjct: 121 KLKAELEKYEKNDPERIEKLKEETKVA 147

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 12/100 (12%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEE----RERCRSLEAQLKVMQQTIEELNKEQESLIDI 618
           + +LK E  EL++ LE    ELQEE    +E    LE ++ ++++ +EEL  E E L   
Sbjct: 269 IEELKSELEELREELE----ELQEELLELKEEIEELEGEISLLRERLEELENELEEL--- 321

Query: 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
             E  +  + + E L++++++    +++L   +  LE+ K
Sbjct: 322 -EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 13/107 (12%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
           SL   + +L+     L+ R E+ + E++E  ++    EA+LK +Q  +EEL +E E L  
Sbjct: 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQ- 453

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLD-------KIKLLEKM 657
              EE +R E   E LR+++++A   +            ++  LE++
Sbjct: 454 ---EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 630
            EL++ LE+ + EL+E  E    L A+L+ +++ +EEL  E   L     EE +  ++E 
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----EEEIEELQKEL 290

Query: 631 ENLRKKIKDASDTIQDLLDKIKLLEK 656
             L  +I       Q L +++  LE+
Sbjct: 291 YALANEISRLEQQKQILRERLANLER 316

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
             K    +L+K  +K++ EL++       LE +L+ +++   +L K+  +L       R+
Sbjct: 15  AGKAAQKQLEKEFKKRQAELEK-------LEKELQKLKE---KLQKDAATLS---EAARE 61

Query: 625 RRERE----EENLRKKIKDASDTIQDLLDKI--KLLEKMKT 659
           ++E+E     +  ++K +     +Q    +   K+L+K+  
Sbjct: 62  KKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDKINK 102

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L     +LK+E  +L+  LE+ + E  E R+  +    +L+ +++ I EL +E + L +
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413

Query: 618 IFAEERDRREREEENLRKKIKDASDTI----QDLLDKIKLLEK 656
               E  R   E  +L   I      I    ++  DK   ++K
Sbjct: 414 ----ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 625
           +++E   L  + E+ E EL+E     R LE++L  +++  +EL  +   L      + + 
Sbjct: 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL----ERKIEE 907

Query: 626 REREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
            E + E  RK++ +    ++ L +++  +E  K
Sbjct: 908 LEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218912 pfam06148, COG2, COG (conserved oligomeric Golgi) complex component, COG2

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 550 PEHFLSDCSLGANLGQLKQENHELKKRLEKKEGEL-QEERERCRSLEAQLKVMQQTIEEL 608
           P+ FLS+   G  L  L+ +     K L+ +  EL  E+     SL   L  + + +E +
Sbjct: 15  PDQFLSELRKGVPLESLRDDLRAYLKLLKSELIELINEDYADFVSLSTNLVGLDEKLERI 74

Query: 609 NKEQESLIDIFAEERD----RREREEENL--RKKIKDASDTIQDLLDKIKLLEKM 657
                +L       R     R E  E  L  +K +++  ++++ LLD   ++EK+
Sbjct: 75  RVPLLALRKEVESVRSELEARLEEVEAKLEEKKDLREKKESLKLLLDLDHVVEKL 129

The COG complex comprises eight proteins COG1-8. The COG complex plays critical roles in Golgi structure and function. The proposed function of the complex is to mediate the initial physical contact between transport vesicles and their membrane targets. A comparable role in tethering vesicles has been suggested for at least six additional large multisubunit complexes, including the exocyst, a complex that mediates trafficking to the plasma membrane. COG2 structure reveals a six-helix bundle with few conserved surface features but a general resemblance to recently determined crystal structures of four different exocyst subunits. These bundles inCOG2 may act as platforms for interaction with other trafficing proteins including SNAREs (soluble N-ethylmaleimide factor attachment protein receptors) and Rabs. Length = 133

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 559 LGANLGQLKQENHE--LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 616
           L   L + K+      +   +E  E EL+E+ E+   L  ++  ++  +EE  +  ESL 
Sbjct: 191 LTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250

Query: 617 DIF-------AEERDRREREEENLRKKIKDASDTIQDLL 648
             F        EER++ ER+ + +    K     +++L 
Sbjct: 251 KKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L     +L+ E  E ++   + E E +E RE    L ++L  +++ IE L + +  L  
Sbjct: 541 ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAA 600

Query: 618 IFAEERDRREREEENL----------RKKIKDASDTIQDLLDKI 651
           I A+  D  ER  E            R+++ +  +  ++L  + 
Sbjct: 601 I-ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643

Length = 880

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L + K E   L K LE  E EL++   +   LE++++ +++ I+   ++  ++ D    E
Sbjct: 33  LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--ERE 90

Query: 623 RDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
                 E +  +++I    D + +L+++I+ LEK   
Sbjct: 91  LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127

Length = 239

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEA--QLKVMQQTIEELNKEQESLIDI 618
             L  L+++   L++   +KE  L+EE+ER RSL+         + +E+   E+E +I+ 
Sbjct: 392 RKLRVLQKKIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIER 451

Query: 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
             E+RDR ER E+   +  K      +DL ++++ L+ 
Sbjct: 452 LKEQRDRDERYEQEEFETYK---KEFEDLKEEVQNLQL 486

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621
           NL  LK++   L K LE       + R+R  +LE +L+ ++Q  +EL     + +D   E
Sbjct: 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE 211

Query: 622 ERDRREREEENLRKKIKDASDTIQDLLDKI-KLLEKMKT 659
           +  +  +E     KK+++  + +Q+L  KI  L  K   
Sbjct: 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSE 250

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
           ++++E  +  +  EK+E + +   E     E +++  ++  E   +E+  +++ +  E+ 
Sbjct: 107 RIQEE--DEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILE-YQREKA 163

Query: 625 RREREEENLRKKIKDASDTIQDLL 648
            RE E E  R++ K+  +     L
Sbjct: 164 EREEEREAERRERKEEKEREVARL 187

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
           SL   L  L+    EL+++LE+ E +L+E +    +LE +L+ +Q  +EEL +E E L +
Sbjct: 692 SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652
              E ++R E  EE L   +++A   +++ +++++
Sbjct: 752 ELEELQERLEELEEELE-SLEEALAKLKEEIEELE 785

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 23/108 (21%), Positives = 55/108 (50%), Gaps = 10/108 (9%)

Query: 559 LGANLGQLKQENHELK---KRLEKKEGELQEERERCRSL---EAQLKVMQQTIEELNKEQ 612
           L A L +L++   +LK   +RLEK E +L++       L   + +L  + +   +  +E+
Sbjct: 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER 369

Query: 613 ----ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
               E  ++   E   + E   + L++++ + S  ++++ ++++ LEK
Sbjct: 370 LEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417

Length = 908

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 565 QLKQENHEL----------KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 614
           QL +   EL          +  LE  + +LQ  RE  +SLE +L+ ++++I+EL KE   
Sbjct: 87  QLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKE--- 143

Query: 615 LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
           L ++  + R+  E   E L +  ++     + + +   LLE++
Sbjct: 144 LRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQL 186

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 625
             ++  E++K +E+ E E ++ +ER   LE  L  ++Q IE +  E + L        + 
Sbjct: 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL----EARIEE 769

Query: 626 REREEENLRKKIKDASD--------TIQDLLDKIK 652
            E +   L + + D            IQ  L K++
Sbjct: 770 LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLE 804

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 16/110 (14%)

Query: 562 NLGQLKQENHE---LKKRLEKKEGE---LQEERERCRSLEAQLKVMQQTIEELNKEQESL 615
           NL +L+++  E   LK++L K +GE   L++E E+   L+ +L  +++ ++EL +E   L
Sbjct: 516 NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575

Query: 616 IDIFA-------EERDRREREEENLRKK---IKDASDTIQDLLDKIKLLE 655
           +           EE + R +E E    +   +KDA   ++    ++K LE
Sbjct: 576 LKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE 625

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
             L +  +E  ELK+ +E+ E EL+      R LE +++ +++ IEEL KE E L +   
Sbjct: 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283

Query: 621 EERDRREREEE-----NLRKKIKDASDTIQDLLDK 650
           E ++ +E+ EE        ++  D    I+  L +
Sbjct: 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 11/100 (11%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L +++++  +L+K L + E  L++E E        L  +++  E+L + +E L     EE
Sbjct: 468 LKEIEEKERKLRKELRELEKVLKKESE--------LIKLKELAEQLKELEEKLKKYNLEE 519

Query: 623 RDRREREEENLRKK---IKDASDTIQDLLDKIKLLEKMKT 659
            +++  E E L++K   +K    +++  L+K++ L+K   
Sbjct: 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559

Length = 880

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 15/93 (16%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
           S  A+  QLKQ    ++K +   E +++E++++   LE QLK        L  E  SL  
Sbjct: 32  SAAADDKQLKQ----IQKEIAALEKKIREQQDQRAKLEKQLK-------SLETEIASLE- 79

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDK 650
               +      + + LRK+I D +  +  L  +
Sbjct: 80  ---AQLIETADDLKKLRKQIADLNARLNALEVQ 109

Length = 420

>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 17/91 (18%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 625
           +++    ++++L+K+ G    + ++   L+ + + + + +EEL  E+  L         R
Sbjct: 7   IRENPDAVREKLKKR-GGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKR 65

Query: 626 REREEENLRKKIKDASDTIQDLLDKIKLLEK 656
            E + E L  ++K+  + +++L   +  LE 
Sbjct: 66  GEDDAEELIAEVKELKEKLKELEAALDELEA 96

Length = 429

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCR-SLEAQLKVMQQTIEELNKEQESLIDIFAEER 623
            L +E  +L   LE+ + EL+E+       LE   + +++ + EL  E   +      E 
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI----RNEL 399

Query: 624 DRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
           +  +RE E+L ++++  S+ ++DL +++K LE   
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621
            L QL++E  EL +++     +L         LE ++  + + + EL  E E L +   E
Sbjct: 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772

Query: 622 ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
             +     E     +I++    I+ L +++K L + 
Sbjct: 773 AEEELAEAEA----EIEELEAQIEQLKEELKALREA 804

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 558 SLGANLGQLKQENHELKKR---LEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 614
           +L     +L++E  EL+     LE + G+L++ER+    LEAQL+ +++ IEEL  + E 
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDE---LEAQLRELERKIEELEAQIEK 914

Query: 615 LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
                +E + + E  EE L  +I+D     +++ ++   LE ++
Sbjct: 915 KRKRLSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQ 957

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM--QQTIEELNKEQESLIDIFAEER 623
           L+ E  +L+ ++ + E E+QE RER +  E +L  +  ++ +  LN E    I I  E  
Sbjct: 50  LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE----IQIAKERI 105

Query: 624 DRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           +  E E   L ++I+     I+DL ++++ LEK
Sbjct: 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138

Length = 239

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 20/102 (19%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK---EQESL---I 616
           L QL++EN  L       E    + R +C  LE +L  +Q   +EL     E ++L   I
Sbjct: 248 LEQLQEENFRL-------EAARDDYRIKCEELEKELAELQHRNDELTSLAAESQALKDEI 300

Query: 617 DIFAEERDRREREE---ENLRKKIKDASDTIQDLLDKIKLLE 655
           D+  E  D+ ++ E   E  +KK++D    + DL  ++KLLE
Sbjct: 301 DVLRESSDKAKKLEAQVETYKKKLED----LNDLRRQVKLLE 338

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 23/96 (23%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESL 615
           L   + +L+ E   L++RLE+ E EL+E  ER   L+ +++ +++ +EE     +E E L
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 616 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 651
           +    E ++  E +   L +++++  + +++ L ++
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAEL 388

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            L   L +L++E  ELK+ LE+ E E +E  +  + LE + + +++ + EL  E   L +
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Query: 618 IFAEERDRREREEENLRK---KIKDASDTIQDLL---------DKIKLLEK 656
              + R+R E  E  L +   ++ +  + +++            +I+ LE+
Sbjct: 906 EIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEE 956

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRS----LEAQLKVMQQTIEELNKEQESLI 616
           + L Q KQ   E    LE++  EL+ + E   S    L  +L  +++ +EEL +E ESL 
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL- 356

Query: 617 DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
                E +  E E E L  ++++  + ++ L  K+  LE 
Sbjct: 357 ---EAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 565 QLKQENHELKKRLEKKEG-------ELQEERERCRSLEAQLKVMQQTIEELNKEQ---ES 614
           + ++E  EL++R+E+ E        EL+E  E    LE +LK  ++  + L K+    E 
Sbjct: 2   EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61

Query: 615 LIDIFAEERDRREREEENLRKKIKDASDTIQDL 647
                 EE    E E E L  ++ +A+  +  L
Sbjct: 62  ENRRLEEEAAASEEERERLEAEVDEATAEVAKL 94

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI- 618
            A +G L      ++  LEK+  EL + R R   +   LK +++   E+ + Q       
Sbjct: 122 AAGVGSLGS----VRDELEKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWK 177

Query: 619 -FAEERDRREREEENLRKKIKDAS---------DTIQDLLDKIKLLEK 656
              +  D  E E  NLRK+++              +  LL + K LE+
Sbjct: 178 DLVKALDEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALEQ 225

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER- 623
           + ++E  E++  L+ K  E +   E  +  E +L+  ++ ++E   + +  +     +R 
Sbjct: 4   EKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRR 63

Query: 624 --DRREREEENLRK----KIKDASDTIQDLLDKIKLLEK 656
             +++  EE+ LRK    +IK+    +++L  +I+ LE+
Sbjct: 64  RAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEE 102

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL---KVMQQTIEELNKEQESL 615
           L   L QL+    EL++RL +++   +   E C+ L   L     ++Q  EEL    ESL
Sbjct: 511 LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570

Query: 616 IDIFAEERDRR---EREEENLRKKIK 638
            +  +E R+RR    ++ E L+ +I+
Sbjct: 571 SESVSEARERRMALRQQLEQLQARIQ 596

Length = 1486

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	666
KOG1845	775	consensus MORC family ATPases [Cell cycle control,	100.0
KOG1845	775	consensus MORC family ATPases [Cell cycle control,	99.97
PF13589	137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	99.08
PRK05218	613	heat shock protein 90; Provisional	99.02
PRK14083	601	HSP90 family protein; Provisional	98.51
COG0326	623	HtpG Molecular chaperone, HSP90 family [Posttransl	97.59
PTZ00130	814	heat shock protein 90; Provisional	97.57
PRK00095	617	mutL DNA mismatch repair protein; Reviewed	97.41
PTZ00272	701	heat shock protein 83 kDa (Hsp83); Provisional	97.35
TIGR00585	312	mutl DNA mismatch repair protein MutL. All protein	96.75
KOG0019	656	consensus Molecular chaperone (HSP90 family) [Post	96.17
COG1389	538	DNA topoisomerase VI, subunit B [DNA replication,	96.08
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.41
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	95.4
PRK14868	795	DNA topoisomerase VI subunit B; Provisional	95.39
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.24
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.18
KOG0020	785	consensus Endoplasmic reticulum glucose-regulated	95.08
KOG3850	455	consensus Predicted membrane protein [Function unk	94.89
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.7
COG2433	652	Uncharacterized conserved protein [Function unknow	94.52
PRK04184	535	DNA topoisomerase VI subunit B; Validated	94.11
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.72
PF02518	111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	93.42
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	92.99
TIGR01052	488	top6b DNA topoisomerase VI, B subunit. This model	92.61
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.04
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.87
PRK10884	206	SH3 domain-containing protein; Provisional	91.22
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	90.87
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.85
PRK11637	428	AmiB activator; Provisional	90.42
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	90.4
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.84
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	89.44
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	89.42
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.25
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	89.03
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	88.87
COG0323	638	MutL DNA mismatch repair enzyme (predicted ATPase)	88.45
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	88.35
smart00387	111	HATPase_c Histidine kinase-like ATPases. Histidine	88.12
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.98
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	87.85
PRK04778	569	septation ring formation regulator EzrA; Provision	87.78
COG3290	537	CitA Signal transduction histidine kinase regulati	87.67
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	87.41
PRK10604	433	sensor protein RstB; Provisional	87.12
PF00038	312	Filament: Intermediate filament protein; InterPro:	87.11
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	87.05
KOG1962	216	consensus B-cell receptor-associated protein and r	86.12
PRK11637	428	AmiB activator; Provisional	86.11
PF15294	278	Leu_zip: Leucine zipper	85.97
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	85.6
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	85.5
PRK11100	475	sensory histidine kinase CreC; Provisional	85.41
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.0
PRK14867	659	DNA topoisomerase VI subunit B; Provisional	84.98
cd00075	103	HATPase_c Histidine kinase-like ATPases; This fami	84.61
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	84.55
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	84.47
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	84.44
PF15236	157	CCDC66: Coiled-coil domain-containing protein 66	84.34
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	84.34
PRK05431	425	seryl-tRNA synthetase; Provisional	84.22
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	84.21
PRK04863	1486	mukB cell division protein MukB; Provisional	84.15
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	84.1
PLN02320	502	seryl-tRNA synthetase	83.95
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	83.55
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	83.49
PHA02562	562	46 endonuclease subunit; Provisional	83.41
PRK00409	782	recombination and DNA strand exchange inhibitor pr	83.4
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	83.32
PRK09470	461	cpxA two-component sensor protein; Provisional	83.29
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	83.21
PRK10884	206	SH3 domain-containing protein; Provisional	83.15
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	82.88
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	82.85
KOG1962	216	consensus B-cell receptor-associated protein and r	82.84
TIGR01386	457	cztS_silS_copS heavy metal sensor kinase. Members	82.84
PRK04778	569	septation ring formation regulator EzrA; Provision	82.8
PRK10780	165	periplasmic chaperone; Provisional	82.67
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.4
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	82.11
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.01
PRK09303	380	adaptive-response sensory kinase; Validated	81.81
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	81.81
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.8
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	81.01
KOG0971	1243	consensus Microtubule-associated protein dynactin	80.86
PRK02224	880	chromosome segregation protein; Provisional	80.84
PF07334	76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	80.66
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	80.48
KOG0971	1243	consensus Microtubule-associated protein dynactin	80.35
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	80.2
PRK09039	343	hypothetical protein; Validated	80.02
PRK10549	466	signal transduction histidine-protein kinase BaeS;	80.01

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-53  Score=481.13  Aligned_cols=558  Identities=37%  Similarity=0.554  Sum_probs=406.3

Q ss_pred             cccccccchhcccCCCCCCCcceEEEE-----ECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccCCeEE
Q 005993            7 GLFSNSKMLQLCSNLPSLWSFHCICFA-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVI   81 (666)
Q Consensus         7 ~~~~~a~a~n~~i~~~~~~G~~~L~I~-----DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLGkdvi   81 (666)
                      ++|+..+-+|-+.|.    -.+.++|+     |||+||+++-+..||.+|++++......+|||||||||++||||++++
T Consensus       166 ~tf~~vd~I~p~~d~----~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i  241 (775)
T KOG1845|consen  166 ATFVRVDYINPVMDI----FIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAI  241 (775)
T ss_pred             cceEEeeeecccccc----cceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhcccee
Confidence            577666666666553    26788888     679999999999999999999975578999999999999999999999


Q ss_pred             EEeeecCCCCCCCceeEeehhhhhhhhcCCCceEEee----eeeccCccceeeeeccchhhHHHHHHH-----HhhcCCC
Q 005993           82 VFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNVET-----IVQWSPF  152 (666)
Q Consensus        82 VfSK~~g~~~~~~t~SigLLS~TFL~~~g~deIvVPm----vswdld~~~~~~ii~~~~~dw~~nL~i-----IlkySPF  152 (666)
                      ||+|..+..|...+++|||||||||+.++.++++|||    ..++...+.|.+|++.+..+|..|+.+     +++|+||
T Consensus       242 ~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~  321 (775)
T KOG1845|consen  242 VFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPY  321 (775)
T ss_pred             EeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCcc
Confidence            9999877789999999999999999999999999999    889988888999998889999999998     9999999


Q ss_pred             CCHHHHHHH---------------HhhcCCCeeEEEEEcc--ccccCCceeecCCCCCCceeecCCcchhhhhhhhcCCC
Q 005993          153 SSEADLLHQ---------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYP  215 (666)
Q Consensus       153 ~sE~eLl~Q---------------fd~Ig~~GT~III~NL--~r~~~G~~ELDFdtD~~DI~I~g~~~d~k~~q~a~~~P  215 (666)
                      .++.+++.|               |+.+..+||.||+||+  |+.+.|.+|+||+.++++|.                  
T Consensus       322 ~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~------------------  383 (775)
T KOG1845|consen  322 SHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIP------------------  383 (775)
T ss_pred             ccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCccccc------------------
Confidence            999999999               8888999999999999  99899999999999999985                  


Q ss_pred             CccchhhhHhhHHHHHHHhhccCCCCeEEEEcCeeeccccccccccccceEEeecCCCCCCCCccccceeeEEEeeecCc
Q 005993          216 NSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDA  295 (666)
Q Consensus       216 ~~~h~~~~~ySLRaYLSILYLr~pprmrIiLrGkkVe~~~~~~dL~~~e~i~YkPq~~~~~lp~~l~~~v~vtiGflk~a  295 (666)
                           ..+.++++.|.+|||+..+++++++++|.++.|+.+..+++..+.++|+|+....+.+ .-.+.+....||.+.+
T Consensus       384 -----~~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~~~~~~~~~~~~~~~  457 (775)
T KOG1845|consen  384 -----WTYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QRLIKLSPKPGFVKDA  457 (775)
T ss_pred             -----ccchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-chhhcccCCCCccccc
Confidence                 1356889999999999999999999999999999999999999999999995432211 1134445689999999


Q ss_pred             cccccccceeEEecCcccc----chhhcccCCCCCCcceeEEEecccccccccccccchhHHHHHHHHHHHHHHHHHhhh
Q 005993          296 KHHIDVQGFNVYHKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNN  371 (666)
Q Consensus       296 ~~~~~~qGf~VYhkNRLIk----~y~rVg~~~~s~GrGVIGVvEanflePtHNKQdFe~t~ly~rLe~rL~q~~~eYW~~  371 (666)
                      +++++++|++|||++|||+    |+||.++..++.+++|++++.+||++|+|++|+|+++...++.+.++.++++.||..
T Consensus       458 ~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~  537 (775)
T KOG1845|consen  458 PRPIDVQQFNVSHGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEK  537 (775)
T ss_pred             CCCCCccCCccccCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccc
Confidence            9999999999999999999    999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccc--ccccccCCCCCCCCCcccCCCCCCCcccccccccccccCCCCCCcccCCCCCCCCCCCcc
Q 005993          372 NCHEIGYAPRRYKKYIKD--SYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKG  449 (666)
Q Consensus       372 ~c~~iGy~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (666)
                      .|++++|.+....+..+.  ++.++..|  +..  |.   + .++.-++      -.      +.+.-.           
T Consensus       538 ~~~~i~~~~~q~~~~~~~~~~~~Ke~~~--~~~--~~---~-~~~~~~~------~~------~~~~~~-----------  586 (775)
T KOG1845|consen  538 KCLRIDEAGRQLQKERESTTTVVKEEKP--ENN--HL---S-SSKRTQR------RK------STGRAI-----------  586 (775)
T ss_pred             cccccCccchhhhhhhcccceeeccccc--ccc--hh---c-chhcccc------cc------cccccc-----------
Confidence            999999999776666543  23333333  211  10   0 1111000      00      000000           


Q ss_pred             cccccCCccccCCCcccCCCCCCCCCCCcccchhhhccccCCCCcccccccccccCCCCCCcCCCCccccccccccCCCC
Q 005993          450 KYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGAS  529 (666)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (666)
                          ..++-....++...|.+.        ..+|+.-.   .+....+..-.+.+.. ..++.-..+..-+ ..|-||+.
T Consensus       587 ----~~~~~~~~~~~~~~~~~~--------~~~v~sq~---~~~~~e~e~~k~~~~~-~~~a~~~~~~~~~-~~~~~~~~  649 (775)
T KOG1845|consen  587 ----SVAVEKFNLRSGPNGRGQ--------IDMVESQE---TPLLKEVERLKKKRRR-AALALEVQSSKNE-EEQSDDDE  649 (775)
T ss_pred             ----ccchhhhccccccCCcCC--------cccccccc---chhhhHHHHhhhhhhh-hhhhhhhccccch-hhhhccch
Confidence                000000011111111110        00000000   0000000000001110 0000000000001 11333333


Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCccCccccchhhhhhhhhhhHHHHHHHHhHH-------hHHHHHHhhhcHHHHHHHHH
Q 005993          530 GGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEG-------ELQEERERCRSLEAQLKVMQ  602 (666)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------~~~~e~~~~~~l~~~~~~~~  602 (666)
                      ---++...-... .-       .....+  . .+-+|++.+.+.-+++.....       ++.++.+..+.|+.++++..
T Consensus       650 ~~~~e~~~~~~~-~~-------~~~~~~--~-~~~~l~~~~~~~l~~~~~~~~t~~~q~~~~n~~~~~~~~~~~~~k~~~  718 (775)
T KOG1845|consen  650 DSLNEVRRKSAK-LK-------SEQKQK--K-TLVELEETRKKWLRSMLNQSLTAGEQLKSLNQQEDFDKTLEVELKESR  718 (775)
T ss_pred             hhhhHHhhhccc-cc-------hhhccc--H-HHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccccchHHHHHHHH
Confidence            211111100000 00       001112  2 377777777777666654333       24555588999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993          603 QTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK  652 (666)
Q Consensus       603 ~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~  652 (666)
                      .+|..+.+.|+++.+.|..||.+|+.||..+|.||..+ .+.++++..+.
T Consensus       719 n~l~~~~~~~~s~~~~~~~~~~~~~~e~~l~~~k~~~~-~~~~~~~~~~~  767 (775)
T KOG1845|consen  719 NKLQNLRNKLQSLADMFIQERADRDKEEDLQRFKLPVS-GTLEKVLKDIE  767 (775)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHhhhhhhhhhhhcccch-hhHHHHhhhhH
Confidence            99999999999999999999999999999999999754 45556655544

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=7.8e-32  Score=305.83  Aligned_cols=272  Identities=24%  Similarity=0.321  Sum_probs=217.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccCCeEEEEeeecCCCCCCCceeEeehhhhhhhh
Q 005993           29 CICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRS  108 (666)
Q Consensus        29 ~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g~~~~~~t~SigLLS~TFL~~  108 (666)
                      ||++.|||.||+++++.++.+|+..     ...||+||||+|+++||+|+++++||+..+      +++++|+|+||++.
T Consensus         1 ~l~~~Ddg~Gms~d~a~~~~~f~~~-----~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~------~~s~~~~sqt~~e~   69 (775)
T KOG1845|consen    1 MLCFLDDGLGMSPDEAPKAINFAVG-----LYGIGDYGNGLKSGSMRIGKDFILFTKKES------TMSCLFLSQTFHES   69 (775)
T ss_pred             CcccccCCCCcCchhhhhhhhhccc-----ccccccccCcccccccccCcccceeecccc------ccceeeeecccccc
Confidence            6899999999999999999999533     347999999999999999999999999764      89999999999999


Q ss_pred             cCCCceEEeeeeeccCccceeeeeccchhhHHHHHHHHhhcCCCCCHHHHHHHHhhc-CCCe-eEEEEEccccccCCcee
Q 005993          109 TGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLM-KDHG-TRIIIYNLWEDDQGLLE  186 (666)
Q Consensus       109 ~g~deIvVPmvswdld~~~~~~ii~~~~~dw~~nL~iIlkySPF~sE~eLl~Qfd~I-g~~G-T~III~NL~r~~~G~~E  186 (666)
                      +..+.++||+++|+..++.   +   ..+.+..+|++|+.+|||.++++++.+++.| +.+| |.+||+|+.+...|.++
T Consensus        70 ~~~~~vvvP~~t~~~~~~~---~---~~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnats  143 (775)
T KOG1845|consen   70 EADDAVVVPCPTFNPRTRE---I---VTEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATS  143 (775)
T ss_pred             cccccceeccccccccccc---c---cccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcc
Confidence            9999999999999988743   2   2277888999999999999999999999998 6665 99999999999999999


Q ss_pred             ecCCCCCCceeecCCcchhhhhhhhcCCCCccchhhhHhhHHHHHHHhhccCCCCeEEEEcCeeeccccccccc--cccc
Q 005993          187 LDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDM--MLSK  264 (666)
Q Consensus       187 LDFdtD~~DI~I~g~~~d~k~~q~a~~~P~~~h~~~~~ySLRaYLSILYLr~pprmrIiLrGkkVe~~~~~~dL--~~~e  264 (666)
                      +||..|+.||++.++.- +        +|       .+.   .|+.++|+.  |+|.|++++..|++.+++.+.  |.++
T Consensus       144 hk~a~~a~aeLldnalD-E--------i~-------~~~---tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~~~~~  202 (775)
T KOG1845|consen  144 HKWAKGAIAELLDNALD-E--------IT-------NGA---TFVRVDYIN--PVMDIFIRALVVQLKRISDDGGGMKPE  202 (775)
T ss_pred             cccccChhhhhcccccc-c--------cc-------ccc---ceEEeeeec--ccccccceeEEeeccceeccccccCHH
Confidence            99999999999876432 1        12       122   449999997  999999999999999877663  2222


Q ss_pred             eEEeecCCCC--CCCCccccceeeEEEeeecCccccccccceeEEecCccccchhhcccCCCCCCcceeEEEeccccccc
Q 005993          265 KVTYRPQPGA--SGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPA  342 (666)
Q Consensus       265 ~i~YkPq~~~--~~lp~~l~~~v~vtiGflk~a~~~~~~qGf~VYhkNRLIk~y~rVg~~~~s~GrGVIGVvEanflePt  342 (666)
                      .+ =+....+  ... +-...+.+...||.+....    -|..+|+-+|.       -...+.++.+.||++..+||++|
T Consensus       203 ~i-~~~m~l~~~~k~-e~~~tv~q~~~gfktst~r----lGa~~i~~~R~-------~~~~~~kstqsiglls~tfL~~t  269 (775)
T KOG1845|consen  203 VI-RKCMSLGYSSKK-EANSTVGQYGNGFKTSTMR----LGADAIVFSRC-------ESRRGLKSTQSIGLLSYTFLRKT  269 (775)
T ss_pred             HH-HHHHHhhhhhhh-hhhhhhhhhccccccchhh----hccceeEeehh-------hhhccCCcceeEEEEEEeeeccc
Confidence            11 0111000  000 0012334557888877763    39999999998       11335678899999999999999


Q ss_pred             ccccccchhH
Q 005993          343 HDKQGFERTT  352 (666)
Q Consensus       343 HNKQdFe~t~  352 (666)
                      + |+||....
T Consensus       270 ~-~~d~iv~~  278 (775)
T KOG1845|consen  270 G-KRDFIVPM  278 (775)
T ss_pred             c-CCceeEec
Confidence            9 99998766

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B

Probab=99.08  E-value=2.2e-11  Score=113.32  Aligned_cols=78  Identities=26%  Similarity=0.440  Sum_probs=61.9

Q ss_pred             ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC--ccccccccCCcccccccccCCeEEEEeeec
Q 005993           10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK--AANTIGQYGNGFKTSTMRLGADVIVFSCCC   87 (666)
Q Consensus        10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~--~~~~IGrYGnGfKTgSMRLGkdviVfSK~~   87 (666)
                      |+|..+.+.|+..+ .+...|.|.|||.||+++++..++.+|.+.+..  ....+|+||.|||.|.+.+|+.+.|.|+..
T Consensus        17 A~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~   95 (137)
T PF13589_consen   17 AGATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIFSLGDRVEVISKTN   95 (137)
T ss_dssp             HHHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGGGTEEEEEEEEEST
T ss_pred             ccCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHHHhcCEEEEEEEEC
Confidence            34444455555433 577899999999999999999999999998852  356899999999999999999999999987


Q ss_pred             C
Q 005993           88 G   88 (666)
Q Consensus        88 g   88 (666)
                      +
T Consensus        96 ~   96 (137)
T PF13589_consen   96 G   96 (137)
T ss_dssp             T
T ss_pred             C
Confidence            6

...

>PRK05218 heat shock protein 90; Provisional

Probab=99.02  E-value=3.1e-09  Score=121.39  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             cccceeEEecCccccchhh-cccCCCCCCcceeEEEecccccccccccccchhHHHHHHHHHHHHHHHH
Q 005993          300 DVQGFNVYHKNRLIKPFWR-LWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKD  367 (666)
Q Consensus       300 ~~qGf~VYhkNRLIk~y~r-Vg~~~~s~GrGVIGVvEanflePtHNKQdFe~t~ly~rLe~rL~q~~~e  367 (666)
                      ..+|+.+|-|+|+|.---+ +.|.   --+=|-||||++-|-|+.+-..|.+...++++.+.|.+.+.+
T Consensus       282 ~~~~~~lyvn~v~I~d~~~~lLP~---wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~  347 (613)
T PRK05218        282 RKGGLKLYVKRVFIMDDAEELLPE---YLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLD  347 (613)
T ss_pred             ccccEEEEECcEEeeCchhhhchH---HHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4579999999999987543 4443   335567899999999999999999998888777777665543

>PRK14083 HSP90 family protein; Provisional

Probab=98.51  E-value=1.5e-06  Score=99.57  Aligned_cols=62  Identities=21%  Similarity=0.408  Sum_probs=52.1

Q ss_pred             CCcceEEEEECCCCCCHHHHHHH-HhcCCCCCCCc------cccccccCCcccccccccCCeEEEEeeec
Q 005993           25 WSFHCICFADNGGGMNPDKMRHC-MSLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCCC   87 (666)
Q Consensus        25 ~G~~~L~I~DDG~GMd~~el~~~-msfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~~   87 (666)
                      .+...|.|.|||.||+.+++.+. +.+|.|.+...      ...||+||.||.++ |.+|..|.|.||+.
T Consensus        60 ~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~-F~vad~v~V~Tr~~  128 (601)
T PRK14083         60 AGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSC-FLVADEIVVVSRSA  128 (601)
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEE-EEecCEEEEEeccC
Confidence            35678999999999999999986 48888777432      24699999999976 67999999999975

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=7.1e-05  Score=85.79  Aligned_cols=63  Identities=29%  Similarity=0.512  Sum_probs=49.8

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEeeecCC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK   89 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g~   89 (666)
                      .+..|.|.|||.||+.+|+++-| ..+.|...          ++..-|||||.||=||.| .+..|.|.||+.|.
T Consensus        72 ~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~  145 (623)
T COG0326          72 DNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGE  145 (623)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCC
Confidence            34689999999999999999988 34443321          224459999999998876 89999999998763

>PTZ00130 heat shock protein 90; Provisional

Probab=97.57  E-value=7.2e-05  Score=88.17  Aligned_cols=62  Identities=24%  Similarity=0.442  Sum_probs=48.1

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      ....|.|.|||.||+.+++.+-+ ..|+|...          ....-|||||.||=|+.| .+..|.|.||+.+
T Consensus       133 ~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~  205 (814)
T PTZ00130        133 EKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNN  205 (814)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCC
Confidence            34589999999999999998776 55554311          123579999999987654 8999999999754

>PRK00095 mutL DNA mismatch repair protein; Reviewed

Probab=97.41  E-value=0.0013  Score=75.95  Aligned_cols=74  Identities=14%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCcc------ccccccCCcccccccccCCeEEEE
Q 005993           10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAA------NTIGQYGNGFKTSTMRLGADVIVF   83 (666)
Q Consensus        10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~------~~IGrYGnGfKTgSMRLGkdviVf   83 (666)
                      |.|..+.+.|.   -.|...+.|.|||.||+++++..++....+.|....      ...|..|.||-+.+ .+ ..+.|.
T Consensus        37 Agat~I~v~i~---~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~  111 (617)
T PRK00095         37 AGATRIDIEIE---EGGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLT  111 (617)
T ss_pred             CCCCEEEEEEE---eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEE
Confidence            34554555542   346678999999999999999999876666665331      35788888886555 44 479999


Q ss_pred             eeecC
Q 005993           84 SCCCG   88 (666)
Q Consensus        84 SK~~g   88 (666)
                      ||+.+
T Consensus       112 s~~~~  116 (617)
T PRK00095        112 SRTAD  116 (617)
T ss_pred             EecCC
Confidence            99764

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional

Probab=97.35  E-value=0.00024  Score=83.06  Aligned_cols=61  Identities=25%  Similarity=0.345  Sum_probs=47.0

Q ss_pred             cceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           27 FHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        27 ~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      ...|.|.|||.||+.++|.+.+ ..|.|...         .....|||||.||-|+. -+|..|.|.||+.+
T Consensus        71 ~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~F-mvad~V~V~Srs~~  141 (701)
T PTZ00272         71 NKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAY-LVADRVTVTSKNNS  141 (701)
T ss_pred             CCEEEEEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEE-EeccEEEEEEecCC
Confidence            4579999999999999988877 45554221         11347999999998765 58899999999753

>TIGR00585 mutl DNA mismatch repair protein MutL

Probab=96.75  E-value=0.0015  Score=69.14  Aligned_cols=71  Identities=13%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             cchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCc------cccccccCCcccccccccCCeEEEEeee
Q 005993           13 KMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCC   86 (666)
Q Consensus        13 ~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~   86 (666)
                      .|.++.|.+. ..|...|.|.|||.||+++++..+..-+++.|...      ....|..|.||  +++.....|.|.||.
T Consensus        38 ~a~~I~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al--~si~~~s~~~i~S~~  114 (312)
T TIGR00585        38 GATRIDVEIE-EGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEAL--ASISSVSRLTITTKT  114 (312)
T ss_pred             CCCEEEEEEE-eCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHH--HHHHhhCcEEEEEee
Confidence            3445555542 24445699999999999999998886666555422      13578888888  445555689999997

All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.0031  Score=72.26  Aligned_cols=63  Identities=29%  Similarity=0.414  Sum_probs=47.7

Q ss_pred             CCcceEEEEECCCCCCHHHHHHHH----hcCCCC-----C--CCccccccccCCcccccccccCCeEEEEeeecC
Q 005993           25 WSFHCICFADNGGGMNPDKMRHCM----SLGYSA-----K--SKAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        25 ~G~~~L~I~DDG~GMd~~el~~~m----sfG~s~-----k--~~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      .....|.|.|.|.||+.++|.+++    +=|.+.     +  ..+.+.|||||.||.++.| .+..|.|+||...
T Consensus        99 k~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~  172 (656)
T KOG0019|consen   99 KDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPA  172 (656)
T ss_pred             CCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCC
Confidence            456689999999999999999998    222211     1  1223589999999998865 6788999999764

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]

Probab=96.08  E-value=0.025  Score=63.56  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=50.5

Q ss_pred             CCcceEEEEECCCCCCHHHHHHHH---hcCCCCCCCccccccccCCcccc----cccccCCeEEEEeeecC
Q 005993           25 WSFHCICFADNGGGMNPDKMRHCM---SLGYSAKSKAANTIGQYGNGFKT----STMRLGADVIVFSCCCG   88 (666)
Q Consensus        25 ~G~~~L~I~DDG~GMd~~el~~~m---sfG~s~k~~~~~~IGrYGnGfKT----gSMRLGkdviVfSK~~g   88 (666)
                      .+...+.|.|||.|+.++++-++.   -||++-. .....-||||.|.+.    |-|..|+-|.|+|++.+
T Consensus        70 ~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh-~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~  139 (538)
T COG1389          70 KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH-RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGD  139 (538)
T ss_pred             CceEEEEEecCCCCCChhHhHHHHHHHhccchhh-hhhhccccccccHHHHHHHHHhcCCCceEEEecCCC
Confidence            566789999999999999998875   4554432 234578999999996    45889999999999864

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.41  E-value=0.19  Score=47.38  Aligned_cols=89  Identities=29%  Similarity=0.516  Sum_probs=70.9

Q ss_pred             cccchhhhhhhhhhhHHHHHHHHhHHh---HHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993          557 CSLGANLGQLKQENHELKKRLEKKEGE---LQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR  626 (666)
Q Consensus       557 ~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~  626 (666)
                      ..+.+.|+++.-|...|+++|.+++..   +..|+       +..+.+..++..++++++++++..+++..+|.|    +
T Consensus        19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE----K   94 (120)
T PF12325_consen   19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE----K   94 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----h
Confidence            346677999999999999999988776   44444       777888999999999999999999999999998    4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 005993          627 EREEENLRKKIKDASDTIQDLLD  649 (666)
Q Consensus       627 ~~e~~~lr~kl~~~~~~i~~~~~  649 (666)
                      ..+.|.||.-+.|--.-..+.++
T Consensus        95 ~E~veEL~~Dv~DlK~myr~Qi~  117 (120)
T PF12325_consen   95 SEEVEELRADVQDLKEMYREQID  117 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888877765544444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=95.40  E-value=0.55  Score=52.32  Aligned_cols=76  Identities=33%  Similarity=0.397  Sum_probs=42.1

Q ss_pred             hhhhhhhhhHHHHHHHHhHHh-----------HHHHHHhhhcHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHh
Q 005993          563 LGQLKQENHELKKRLEKKEGE-----------LQEERERCRSLEAQLKVMQQ--TIEELNKEQE-----SLIDIFAEERD  624 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~-----------~~~e~~~~~~l~~~~~~~~~--~~~~~~keq~-----~li~~f~eer~  624 (666)
                      +..++++...|.+.+.++++.           |+.|+.|+..||+||.|+-+  |-|-.|=.|+     .=++--+.||.
T Consensus       221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRa  300 (395)
T PF10267_consen  221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERA  300 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344444444444444444443           57778899999999977654  3333333333     23455778887


Q ss_pred             hhHHHH-HHHHHHHH
Q 005993          625 RREREE-ENLRKKIK  638 (666)
Q Consensus       625 ~~~~e~-~~lr~kl~  638 (666)
                      |-=+|. |+...|+.
T Consensus       301 Rdi~E~~Es~qtRis  315 (395)
T PF10267_consen  301 RDIWEVMESCQTRIS  315 (395)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            644332 44444443

Its function is unknown.

>PRK14868 DNA topoisomerase VI subunit B; Provisional

Probab=95.39  E-value=0.051  Score=64.47  Aligned_cols=62  Identities=23%  Similarity=0.405  Sum_probs=47.0

Q ss_pred             cceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc-cccccccCCcccccc----cccCCeEEEEeeecC
Q 005993           27 FHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA-ANTIGQYGNGFKTST----MRLGADVIVFSCCCG   88 (666)
Q Consensus        27 ~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~-~~~IGrYGnGfKTgS----MRLGkdviVfSK~~g   88 (666)
                      ...|.|.|||.||+++++..+. +|.+.+|... ....|+.|.||.++.    |..|..+.|-|+..+
T Consensus        81 ~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~  148 (795)
T PRK14868         81 YYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQG  148 (795)
T ss_pred             EEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCC
Confidence            3579999999999999999988 4655554322 245799999998655    334888999999754

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.24  E-value=0.21  Score=52.13  Aligned_cols=95  Identities=33%  Similarity=0.464  Sum_probs=75.2

Q ss_pred             ccchhhhhhhhhhhHHHHHHHHhHHhH------------HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHH------
Q 005993          558 SLGANLGQLKQENHELKKRLEKKEGEL------------QEER----ERCRSLEAQLKVMQQTIEELNKEQESL------  615 (666)
Q Consensus       558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~------------~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~l------  615 (666)
                      ++++-+.++..|..++++|+.+.|..+            .+|.    ++..+|+.+|.++...++.+.+++++|      
T Consensus        56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~  135 (239)
T COG1579          56 DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER  135 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345557788889999999998888764            4444    677788888877777777776666554      


Q ss_pred             -HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993          616 -IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK  652 (666)
Q Consensus       616 -i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~  652 (666)
                       -.-|+|.|.+-+.|.+.++.+....++.+..|.++++
T Consensus       136 ~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~  173 (239)
T COG1579         136 LEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD  173 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             4568999999999999999999999999988888776

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.18  E-value=0.22  Score=57.29  Aligned_cols=80  Identities=35%  Similarity=0.446  Sum_probs=65.1

Q ss_pred             cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHH
Q 005993          559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE---EENLRK  635 (666)
Q Consensus       559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e---~~~lr~  635 (666)
                      |.....+|++|+.+|++++.+++.+|..+.++|..|..+.+++....+.+.+|.+.|..-.++-+.|-.+=   -..|..
T Consensus       155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q  234 (546)
T PF07888_consen  155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQ  234 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44457789999999999999999999999999999999999999999999999999988888777664332   234455


Q ss_pred             HHH
Q 005993          636 KIK  638 (666)
Q Consensus       636 kl~  638 (666)
                      |.+
T Consensus       235 k~~  237 (546)
T PF07888_consen  235 KEK  237 (546)
T ss_pred             HHH
Confidence            553

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.015  Score=65.61  Aligned_cols=62  Identities=24%  Similarity=0.359  Sum_probs=44.8

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH----hcCCCCC-------CC----ccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM----SLGYSAK-------SK----AANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m----sfG~s~k-------~~----~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      .+..|.|.|-|.||++++|++-+    .=|.+.-       ..    ..+.|||||.||=+| |-.+..|+|.||++.
T Consensus       140 e~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsA-fLVAD~vvVtsKhNd  216 (785)
T KOG0020|consen  140 EKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSA-FLVADRVVVTSKHND  216 (785)
T ss_pred             hhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhh-hhhcceEEEEeccCC
Confidence            45689999999999999999877    2222211       00    124699999999876 457788888888754

>KOG3850 consensus Predicted membrane protein [Function unknown]

Probab=94.89  E-value=0.66  Score=51.39  Aligned_cols=67  Identities=34%  Similarity=0.410  Sum_probs=45.1

Q ss_pred             hhhhhhhhhHHHHHHHHhHHh------------------HHHHHHhhhcHHHHHHHHH----HHHHHHHHHHHHH---HH
Q 005993          563 LGQLKQENHELKKRLEKKEGE------------------LQEERERCRSLEAQLKVMQ----QTIEELNKEQESL---ID  617 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~------------------~~~e~~~~~~l~~~~~~~~----~~~~~~~keq~~l---i~  617 (666)
                      +..+..|..|.|+-...++++                  ||.|+=+|..||+||-++-    ..|-.|+.||.+.   |+
T Consensus       262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva  341 (455)
T KOG3850|consen  262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA  341 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666655555554                  5888889999999996553    3566666777654   56


Q ss_pred             HHHHHHhhhHHH
Q 005993          618 IFAEERDRRERE  629 (666)
Q Consensus       618 ~f~eer~~~~~e  629 (666)
                      --+-||.|-=||
T Consensus       342 YQsyERaRdIqE  353 (455)
T KOG3850|consen  342 YQSYERARDIQE  353 (455)
T ss_pred             HHHHHHHHHHHH
Confidence            677788765444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.70  E-value=0.1  Score=61.72  Aligned_cols=39  Identities=31%  Similarity=0.509  Sum_probs=21.7

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL  598 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~  598 (666)
                      ...|.||++||.+|..||..+.-..++|+.-..+||.+|
T Consensus       459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL  497 (697)
T PF09726_consen  459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL  497 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334666666666666666665555555554444444444

; GO: 0016021 integral to membrane

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.28  Score=56.81  Aligned_cols=86  Identities=27%  Similarity=0.426  Sum_probs=51.0

Q ss_pred             HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----hhhHHHHHHHHHHHHHHHHHHHHH
Q 005993          574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF-AEER-----DRREREEENLRKKIKDASDTIQDL  647 (666)
Q Consensus       574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f-~eer-----~~~~~e~~~lr~kl~~~~~~i~~~  647 (666)
                      .+++.+.++-+++=...++.|+..++++++.||.+..+-+.+..-. .+.|     ..+|.+-+.|+++|.+....|.+|
T Consensus       421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L  500 (652)
T COG2433         421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL  500 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444443333333444555555555555555544444443221 1122     235667789999999999999999


Q ss_pred             HHHHhhhhhcCC
Q 005993          648 LDKIKLLEKMKT  659 (666)
Q Consensus       648 ~~~~~~~~~~~~  659 (666)
                      -.+|+.+++|..
T Consensus       501 ~~~l~~l~k~~~  512 (652)
T COG2433         501 ERKLAELRKMRK  512 (652)
T ss_pred             HHHHHHHHHHHh
Confidence            999998887653

>PRK04184 DNA topoisomerase VI subunit B; Validated

Probab=94.11  E-value=0.065  Score=61.53  Aligned_cols=63  Identities=29%  Similarity=0.453  Sum_probs=46.5

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc-cccccccCCcccccc----cccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA-ANTIGQYGNGFKTST----MRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~-~~~IGrYGnGfKTgS----MRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+++++..++ .|-+..+... ....|.+|.||..+.    +..|..+.|.|+..+
T Consensus        73 ~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~  141 (535)
T PRK04184         73 DHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGG  141 (535)
T ss_pred             cEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCC
Confidence            34679999999999999999886 3434444322 346799999998753    445778999998754

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.72  E-value=1.7  Score=41.04  Aligned_cols=93  Identities=27%  Similarity=0.384  Sum_probs=76.4

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005993          562 NLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR  634 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr  634 (666)
                      -+..++++.....++....+....+|+       .....|.++++.++.++.++..+=++....+.+.+..=..+++-|.
T Consensus        25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le  104 (132)
T PF07926_consen   25 QLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLE  104 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            455666666666666666666667777       6677788889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 005993          635 KKIKDASDTIQDLLDKIKLL  654 (666)
Q Consensus       635 ~kl~~~~~~i~~~~~~~~~~  654 (666)
                      +-+.++-..|.||-+|=+.|
T Consensus       105 ~e~~~~~~r~~dL~~QN~lL  124 (132)
T PF07926_consen  105 KELSELEQRIEDLNEQNKLL  124 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988774443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins

Probab=93.42  E-value=0.038  Score=48.46  Aligned_cols=69  Identities=17%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccccc---ccCCeEEEEeee
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM---RLGADVIVFSCC   86 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSM---RLGkdviVfSK~   86 (666)
                      +.|.+....+...|.|.|||.||+++++..+..-+++.+. .....+.+|.||..+..   ++|-++.+-+..
T Consensus        27 I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~   98 (111)
T PF02518_consen   27 IDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSE   98 (111)
T ss_dssp             EEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEET
T ss_pred             EEEEEEEecCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcC
Confidence            3344434457789999999999999999999875555443 34567779999964432   345555555553

The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=92.99  E-value=1.2  Score=45.98  Aligned_cols=47  Identities=34%  Similarity=0.581  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993          607 ELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL  653 (666)
Q Consensus       607 ~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~  653 (666)
                      ++-++-..|..+|-+||.-|.+.|+++.+||.+....|++-++.=+.
T Consensus       125 ~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~  171 (247)
T PF06705_consen  125 ELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKN  171 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556677889999999999999999999999999998777765443

>TIGR01052 top6b DNA topoisomerase VI, B subunit

Probab=92.61  E-value=0.17  Score=57.69  Aligned_cols=61  Identities=25%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHh-cCCCCCCC-ccccccccCCcccccc----cccCCeEEEEeeecC
Q 005993           28 HCICFADNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQYGNGFKTST----MRLGADVIVFSCCCG   88 (666)
Q Consensus        28 ~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~-~~~~IGrYGnGfKTgS----MRLGkdviVfSK~~g   88 (666)
                      ..|.|.|||.||+++++..++. |-+++|.. .....|..|.||.++.    +..|..+.|.|+..|
T Consensus        65 ~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g  131 (488)
T TIGR01052        65 YKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGG  131 (488)
T ss_pred             EEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecCC
Confidence            4799999999999999998873 55555543 2345799999999553    455777999999765

This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.04  E-value=1.5  Score=41.96  Aligned_cols=49  Identities=29%  Similarity=0.508  Sum_probs=26.7

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHH
Q 005993          589 ERCRSLEAQLKVMQQTIEELNKEQESLI-------DIFAEERDRREREEENLRKKI  637 (666)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~~~~keq~~li-------~~f~eer~~~~~e~~~lr~kl  637 (666)
                      .+.+.|+.++..++.++.....|-..|.       --+.-|..|+|+|-+.|+++|
T Consensus        94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555555554444443333333       234556667777777666665

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.87  E-value=3.1  Score=40.87  Aligned_cols=63  Identities=25%  Similarity=0.398  Sum_probs=31.6

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE  622 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee  622 (666)
                      ...+.+|.+|...+.+++...+..+....+....+.+.++.++.++..++..-+.+...|.+=
T Consensus        87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l  149 (191)
T PF04156_consen   87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL  149 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444666666666666666666655544443333333444444444444444444444444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.22  E-value=2.1  Score=43.89  Aligned_cols=56  Identities=16%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993          557 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL  615 (666)
Q Consensus       557 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l  615 (666)
                      |+....+.+|++|..+|+.+|.....+...+   ...|...++++.++++++++|...|
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~L~~~n~~L  144 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQR---TAEMQQKVAQSDSVINGLKEENQKL  144 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566678888888888888887776654422   2223344444444555544444444

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=90.87  E-value=1.5  Score=46.32  Aligned_cols=100  Identities=18%  Similarity=0.288  Sum_probs=73.6

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhHHHHHH------------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGELQEERE------------RCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EER  623 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~------------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer  623 (666)
                      .+-++.|+.|+.++..++.+.+..+..|..            .++...++++.++++++++.++..+.+....    .++
T Consensus       141 ~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~  220 (301)
T PF14362_consen  141 DAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARK  220 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence            455888999999999999999999988882            3788889999999999999998888887777    444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 005993          624 DRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT  659 (666)
Q Consensus       624 ~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~  659 (666)
                      .+.+...+.....-....+.-..+|+++.++.....
T Consensus       221 ~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L~~  256 (301)
T PF14362_consen  221 ARLDEARQAKVAEFQAIISANDGFLARLEALWELTK  256 (301)
T ss_pred             HHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHHHh
Confidence            444443333333333333445779999999887663

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.85  E-value=4.4  Score=41.70  Aligned_cols=68  Identities=31%  Similarity=0.496  Sum_probs=46.6

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHH-----h----------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993          560 GANLGQLKQENHELKKRLEKKEG-----E----------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD  624 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~-----~----------~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~  624 (666)
                      ..-|.+++.++..|+.++...-+     .          +.+..+++..|..+++.+++.+++..++-+.+-+.....|.
T Consensus        26 ~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~  105 (302)
T PF10186_consen   26 RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS  105 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33477888888888888877654     2          22233777777777777777777777777777776666665


Q ss_pred             hhH
Q 005993          625 RRE  627 (666)
Q Consensus       625 ~~~  627 (666)
                      .-+
T Consensus       106 ~l~  108 (302)
T PF10186_consen  106 RLS  108 (302)
T ss_pred             HHH
Confidence            433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK11637 AmiB activator; Provisional

Probab=90.42  E-value=3.9  Score=45.41  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=54.6

Q ss_pred             hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD  649 (666)
Q Consensus       571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~  649 (666)
                      ...++.|.....+++.++...+.+..+++..+++|+...+|+..+++-+..++..++++.+.|+...+.....|.+|..
T Consensus       176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~  254 (428)
T PRK11637        176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER  254 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555556666666666666777777777888888888888888888888777777777766666666665543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=90.40  E-value=2.5  Score=55.30  Aligned_cols=92  Identities=26%  Similarity=0.394  Sum_probs=65.5

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKK  636 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~~~~~e~~~lr~k  636 (666)
                      ...+.+|.+...+|..|+..++++|+.|+..+..++.+..++...+++++++.+-.   +..-.|-+.+|+.|...||..
T Consensus      1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888899999999999998888777777777777777777777665544   444556677777777777777


Q ss_pred             HHHHHHHHHHHHHHH
Q 005993          637 IKDASDTIQDLLDKI  651 (666)
Q Consensus       637 l~~~~~~i~~~~~~~  651 (666)
                      |+++..+-...++.+
T Consensus      1169 leee~~~~e~~~~~l 1183 (1930)
T KOG0161|consen 1169 LEEETLDHEAQIEEL 1183 (1930)
T ss_pred             HHHHHHhHHHHHHHH
Confidence            776655444444333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.84  E-value=6.5  Score=38.63  Aligned_cols=88  Identities=28%  Similarity=0.490  Sum_probs=52.2

Q ss_pred             hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       566 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~---keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      +..|-.+++.+|...++++..+.+++..++.++...+.......   +.=++-++.|.++.....+|-..|++++++.-.
T Consensus        79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~  158 (191)
T PF04156_consen   79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSRE  158 (191)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456666777777777776666666666666665554443333   333444566666666666666666666665555


Q ss_pred             HHHHHHHHHhh
Q 005993          643 TIQDLLDKIKL  653 (666)
Q Consensus       643 ~i~~~~~~~~~  653 (666)
                      .++++...+..
T Consensus       159 ~~~~~~~~~~~  169 (191)
T PF04156_consen  159 EVQELRSQLER  169 (191)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=89.44  E-value=3.7  Score=49.20  Aligned_cols=94  Identities=27%  Similarity=0.413  Sum_probs=63.4

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHH-HH------------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHH------
Q 005993          563 LGQLKQENHELKKRLEKKEGELQE-ER------------------ERCRSLEAQLKVMQQTIEELNKEQESLID------  617 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~-e~------------------~~~~~l~~~~~~~~~~~~~~~keq~~li~------  617 (666)
                      +.-|+-||..|+.||.-+...|+. |+                  -.|.+|+.||+|..+.+|.+...+|.|+.      
T Consensus       389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~  468 (861)
T PF15254_consen  389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK  468 (861)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence            777999999999999888887743 44                  24567788887766665555544444433      


Q ss_pred             --------HHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993          618 --------IFA-------EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK  656 (666)
Q Consensus       618 --------~f~-------eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~  656 (666)
                              +|-       |-+.-.|.|-.+++.-+++|.-..+.+-=+|.+.|+
T Consensus       469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sek  522 (861)
T PF15254_consen  469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEK  522 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence                    322       224455666667777777888888887777776664

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=89.42  E-value=4.2  Score=50.22  Aligned_cols=99  Identities=19%  Similarity=0.356  Sum_probs=68.6

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------
Q 005993          562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD-----------------  624 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~-----------------  624 (666)
                      -|++|+.|...++++|..+++.+..+++-++.|.++++..+.+|..-++|-+++-.-|.+-+.                 
T Consensus       449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~  528 (1041)
T KOG0243|consen  449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEE  528 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388888898999999999988887677666666666666666665555555544444333222                 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 005993          625 -RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPS  661 (666)
Q Consensus       625 -~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~~  661 (666)
                       .+|+ ...||.-+++|..-++.|.++|....+.-.+|
T Consensus       529 ~l~~~-a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n  565 (1041)
T KOG0243|consen  529 KLVDR-ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDN  565 (1041)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence             3344 56788889999999999999988665544433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.25  E-value=4  Score=51.25  Aligned_cols=98  Identities=30%  Similarity=0.440  Sum_probs=79.8

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHh----------HHHHHH-------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993          562 NLGQLKQENHELKKRLEKKEGE----------LQEERE-------RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD  624 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~----------~~~e~~-------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~  624 (666)
                      .|.+|+++...|.++|...++.          ++.+..       ....|.+++.++++++.++..+...++..+...|.
T Consensus       772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  851 (1201)
T PF12128_consen  772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRK  851 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888889999999988888776          233334       48899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 005993          625 RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT  659 (666)
Q Consensus       625 ~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~  659 (666)
                      +-+++...+++.++.+...+..|..-+..+.....
T Consensus       852 ~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~  886 (1201)
T PF12128_consen  852 ELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSE  886 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence            99999999999998888777765555554444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=89.03  E-value=3  Score=48.42  Aligned_cols=94  Identities=29%  Similarity=0.467  Sum_probs=68.2

Q ss_pred             ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 005993          558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKV--------------MQQTIEELNKEQESLIDIFAEER  623 (666)
Q Consensus       558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~--------------~~~~~~~~~keq~~li~~f~eer  623 (666)
                      .++-.|.+|++|+.+||.++.+.+..+...+++-+.++..|-+              ++-.+..+.+|+.-|.+-+..-|
T Consensus       110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3455699999999999999999998877666555544444333              33344556778888888888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993          624 DRREREEENLRKKIKDASDTIQDLLDKIKLLE  655 (666)
Q Consensus       624 ~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~  655 (666)
                      ...|+|- .||.   |+.+.+|+|++.|+-+.
T Consensus       190 ~~ld~Et-llr~---d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  190 KQLDDET-LLRV---DLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHH-HHHH---HHHhHHHHHHHHHHHHH
Confidence            8888774 3332   67789999999988654

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=88.87  E-value=3.4  Score=50.98  Aligned_cols=88  Identities=28%  Similarity=0.460  Sum_probs=61.2

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhH----H---HHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGEL----Q---EER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR---ER  628 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~----~---~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~---~~  628 (666)
                      ...|.++|++-..|++.+...++++    .   .|+ +|.+.|+.+++.++-++..|..|++-+..-..++..++   ..
T Consensus       364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~  443 (1074)
T KOG0250|consen  364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG  443 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3347777777777777776666654    2   222 88899999999999999999999988887665554444   34


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005993          629 EEENLRKKIKDASDTIQDL  647 (666)
Q Consensus       629 e~~~lr~kl~~~~~~i~~~  647 (666)
                      +.-.||+|+..-+.+|++|
T Consensus       444 ~i~~l~k~i~~~~~~l~~l  462 (1074)
T KOG0250|consen  444 EILQLRKKIENISEELKDL  462 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666554

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]

Probab=88.45  E-value=0.47  Score=55.72  Aligned_cols=74  Identities=14%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccc------cccccCCcccccccccCCeEEEE
Q 005993           10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAAN------TIGQYGNGFKTSTMRLGADVIVF   83 (666)
Q Consensus        10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~------~IGrYGnGfKTgSMRLGkdviVf   83 (666)
                      |+|.-+.+.++   -+|-..|.|.|||+||+++++.-|..=-...|-....      ++|==|--|  +|.+--.+++|-
T Consensus        38 AGAt~I~I~ve---~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlGFRGEAL--~SIasVsrlti~  112 (638)
T COG0323          38 AGATRIDIEVE---GGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLGFRGEAL--ASIASVSRLTIT  112 (638)
T ss_pred             cCCCEEEEEEc---cCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccCccHHHH--HHHHhhheeEEE
Confidence            44544444443   5678889999999999999998888433444433322      233333333  555566899999


Q ss_pred             eeecC
Q 005993           84 SCCCG   88 (666)
Q Consensus        84 SK~~g   88 (666)
                      ||+.+
T Consensus       113 Srt~~  117 (638)
T COG0323         113 SRTAE  117 (638)
T ss_pred             eecCC
Confidence            99654

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=88.35  E-value=5  Score=38.17  Aligned_cols=62  Identities=26%  Similarity=0.321  Sum_probs=42.6

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE  621 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e  621 (666)
                      ...+..|..+|.+|-++...++..|..-+..+..+-..+..++.+..++.++|..+..-|+-
T Consensus        33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~   94 (150)
T PF07200_consen   33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSP   94 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            44577788899999998888888877777666666677777777777777777776666654

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>smart00387 HATPase_c Histidine kinase-like ATPases

Probab=88.12  E-value=0.42  Score=39.47  Aligned_cols=67  Identities=19%  Similarity=0.282  Sum_probs=43.5

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEE
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVF   83 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVf   83 (666)
                      .+.|....-.+...+.|.|+|.||+++.+..++..+++... .....+++|.||+.   -..+++.++.+-
T Consensus        26 ~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~   95 (111)
T smart00387       26 RITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVE   95 (111)
T ss_pred             eEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEE
Confidence            34444433445678999999999999999988866654432 22345678999873   233355554443

Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.98  E-value=3.8  Score=42.89  Aligned_cols=68  Identities=24%  Similarity=0.326  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993          569 ENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA  640 (666)
Q Consensus       569 e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~  640 (666)
                      +...+||++....+.|+.+.       +.+..|+.++++.|..|+.+.+|.-    .+-|+++++-.|...|++++.+-
T Consensus       129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHh
Confidence            34456666655555444333       3444455555555556666655554    35688999999999999998754

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=87.85  E-value=3.9  Score=47.94  Aligned_cols=56  Identities=23%  Similarity=0.281  Sum_probs=29.5

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005993          589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTI  644 (666)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i  644 (666)
                      +....++.++++++++++++..+..+.--.+.++|+.-..+.+.++..++++...+
T Consensus       230 ~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l  285 (650)
T TIGR03185       230 QEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQL  285 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555554444444555666665555555555555444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=87.78  E-value=3.7  Score=47.55  Aligned_cols=79  Identities=23%  Similarity=0.415  Sum_probs=43.2

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      ..+|.++..+|.+++...++.+.....-...++.+++++.++++++.++|..+.+...+=|    .+|...|++|+....
T Consensus       350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr----k~E~eAr~kL~~~~~  425 (569)
T PRK04778        350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR----KDELEAREKLERYRN  425 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            4444444444444444444444333334556667777777778888888777766655433    334444555554444


Q ss_pred             HHH
Q 005993          643 TIQ  645 (666)
Q Consensus       643 ~i~  645 (666)
                      ++.
T Consensus       426 ~L~  428 (569)
T PRK04778        426 KLH  428 (569)
T ss_pred             HHH
Confidence            443

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]

Probab=87.67  E-value=0.38  Score=55.22  Aligned_cols=67  Identities=27%  Similarity=0.269  Sum_probs=52.8

Q ss_pred             hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993           15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC   86 (666)
Q Consensus        15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~   86 (666)
                      +.+.+-+-+..+.-.+.|.|+|+||+++.+.++...|+|.|.     -+.-|+||.   ..-=++|-++.|-+..
T Consensus       450 k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiGL~Lvkq~V~~~~G~I~~~s~~  519 (537)
T COG3290         450 KEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIGLYLVKQLVERLGGSIEVESEK  519 (537)
T ss_pred             cEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchhHHHHHHHHHHcCceEEEeeCC
Confidence            444444567888889999999999999999999999999884     345588875   5556778888888863

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=87.41  E-value=6.2  Score=48.05  Aligned_cols=24  Identities=13%  Similarity=0.234  Sum_probs=16.0

Q ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCMSLG   51 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~msfG   51 (666)
                      ++..+.+--||.|  -..+..||.|+
T Consensus        23 ~~~~~i~G~NGsG--KS~ildAi~~~   46 (1164)
T TIGR02169        23 KGFTVISGPNGSG--KSNIGDAILFA   46 (1164)
T ss_pred             CCeEEEECCCCCC--HHHHHHHHHHH
Confidence            4456667788888  44567777663

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK10604 sensor protein RstB; Provisional

Probab=87.12  E-value=0.82  Score=49.90  Aligned_cols=62  Identities=16%  Similarity=0.300  Sum_probs=43.1

Q ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeeec
Q 005993           26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCCC   87 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~~   87 (666)
                      +.-.|.|.|||.||+++++.+...-.+.........-|.+|.||-   ...-.+|.++.|-+...
T Consensus       348 ~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~  412 (433)
T PRK10604        348 NQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESEL  412 (433)
T ss_pred             CEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCC
Confidence            445799999999999999998886544332111223567899984   44556778888877643

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=87.11  E-value=7.4  Score=40.93  Aligned_cols=80  Identities=31%  Similarity=0.466  Sum_probs=50.7

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      +..++.|+.+++..+..++.++..=..++.+|+.++.+++..+....+.       |...-...+.|-..||..+..-..
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~-------~~~~i~~le~el~~l~~~~~~~~~  283 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE-------YQAEIAELEEELAELREEMARQLR  283 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH-------HHHhhhccchhHHHHHHHHHHHHH
Confidence            5566666666666666666666665566666666666666655543333       333444566667777777777777


Q ss_pred             HHHHHHH
Q 005993          643 TIQDLLD  649 (666)
Q Consensus       643 ~i~~~~~  649 (666)
                      .-|+||+
T Consensus       284 ey~~Ll~  290 (312)
T PF00038_consen  284 EYQELLD  290 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777776

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=87.05  E-value=6.2  Score=46.25  Aligned_cols=87  Identities=22%  Similarity=0.316  Sum_probs=58.4

Q ss_pred             HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993          573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK  652 (666)
Q Consensus       573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~  652 (666)
                      +.+++...+..+..-..+...++.++..++.+++++.++.+.|-+.|..+--.+.+|.+.|+++++.+-....+...+++
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~  286 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR  286 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444345566666777777777777777777777777777777777777888888877777777777776


Q ss_pred             hhhhcCC
Q 005993          653 LLEKMKT  659 (666)
Q Consensus       653 ~~~~~~~  659 (666)
                      .+-.-..
T Consensus       287 ~l~~~~~  293 (650)
T TIGR03185       287 ELAADPL  293 (650)
T ss_pred             HHhcccC
Confidence            5543333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=86.12  E-value=2.3  Score=44.11  Aligned_cols=45  Identities=29%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             hhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993          567 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE  611 (666)
Q Consensus       567 ~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke  611 (666)
                      ..||.++++.+.+++++++..-.+.+.++++...+++|.|++++|
T Consensus       150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E  194 (216)
T KOG1962|consen  150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE  194 (216)
T ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            344444444444444444444444444444444444444444444

>PRK11637 AmiB activator; Provisional

Probab=86.11  E-value=9.1  Score=42.59  Aligned_cols=17  Identities=18%  Similarity=0.296  Sum_probs=7.8

Q ss_pred             hhhhhhhhhHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEK  579 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~  579 (666)
                      |++++++..+++..|..
T Consensus        49 l~~l~~qi~~~~~~i~~   65 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQ   65 (428)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444443

>PF15294 Leu_zip: Leucine zipper

Probab=85.97  E-value=7.9  Score=41.61  Aligned_cols=45  Identities=36%  Similarity=0.500  Sum_probs=34.8

Q ss_pred             cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 005993          559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ  603 (666)
Q Consensus       559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~  603 (666)
                      +..-|..|+.||..||+||+..|...-.=++-...|+.+|.++|.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455699999999999999999998865555555666666666665

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=85.60  E-value=7.7  Score=44.40  Aligned_cols=85  Identities=20%  Similarity=0.286  Sum_probs=53.4

Q ss_pred             cCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005993          554 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL  633 (666)
Q Consensus       554 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~l  633 (666)
                      -+...|.|++.++    .+++.+|..++.+=..-++.|+.|..|..++-++|..          .++-||.+-.+|.+.|
T Consensus        56 TP~DTlrTlva~~----k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~----------av~~~~~~~~~~~~ql  121 (472)
T TIGR03752        56 TPADTLRTLVAEV----KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ----------AVQSETQELTKEIEQL  121 (472)
T ss_pred             CccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------HHHhhhHHHHHHHHHH
Confidence            3444456666554    5677777766655433334444455555444444443          3455677777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 005993          634 RKKIKDASDTIQDLLDKIK  652 (666)
Q Consensus       634 r~kl~~~~~~i~~~~~~~~  652 (666)
                      ...+......|++|..||.
T Consensus       122 ~~~~~~~~~~l~~l~~~l~  140 (472)
T TIGR03752       122 KSERQQLQGLIDQLQRRLA  140 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888888888899988885

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=85.50  E-value=12  Score=37.82  Aligned_cols=62  Identities=29%  Similarity=0.434  Sum_probs=44.7

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhHHHHH------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGELQEER------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE  621 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e  621 (666)
                      ...+..|+++..++++++...++.+..+.      +.+..|.+++++++++++++.+|-+++.+.=.+
T Consensus        68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~  135 (188)
T PF03962_consen   68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPE  135 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            44577778888888888887777775544      566677788888888888888887766554333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PRK11100 sensory histidine kinase CreC; Provisional

Probab=85.41  E-value=0.54  Score=50.21  Aligned_cols=71  Identities=15%  Similarity=0.064  Sum_probs=46.3

Q ss_pred             hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993           15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC   86 (666)
Q Consensus        15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~   86 (666)
                      ..+.|....-.+...|.|.|||.||+++++.+.+.-+++.+.. ...-+..|.||..+   ...+|..+.|.+..
T Consensus       388 ~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~  461 (475)
T PRK11100        388 GTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLAFVREVARLHGGEVTLRNRP  461 (475)
T ss_pred             CEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHHHHHHHHHHCCCEEEEEEcC
Confidence            3445544344567789999999999999999999766554321 12234567887642   23456677777764

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=85.00  E-value=16  Score=35.70  Aligned_cols=91  Identities=24%  Similarity=0.337  Sum_probs=52.6

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      |+.-+.+..+|+.++..+|.+|+-=-...-.++.+.+++++-++++.-+    |...+.+|++-..|-.+||.--+.--.
T Consensus        12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e----l~~lt~el~~L~~EL~~l~sEk~~L~k   87 (140)
T PF10473_consen   12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE----LEELTSELNQLELELDTLRSEKENLDK   87 (140)
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566678888888888888887433333444555555555555554433    344455555555555555555555555


Q ss_pred             HHHHHHHHHhhhhhc
Q 005993          643 TIQDLLDKIKLLEKM  657 (666)
Q Consensus       643 ~i~~~~~~~~~~~~~  657 (666)
                      ..|..-++|..|+..
T Consensus        88 ~lq~~q~kv~eLE~~  102 (140)
T PF10473_consen   88 ELQKKQEKVSELESL  102 (140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555533

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK14867 DNA topoisomerase VI subunit B; Provisional

Probab=84.98  E-value=1  Score=53.21  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=44.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHh-cCCCCCCCc-cccccccCCcccccc----cccCCeEEEEeeec
Q 005993           28 HCICFADNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYGNGFKTST----MRLGADVIVFSCCC   87 (666)
Q Consensus        28 ~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~~-~~~IGrYGnGfKTgS----MRLGkdviVfSK~~   87 (666)
                      ..|.|.|||.||+++.+..+.. |=..+|... ....|..|.|+.++.    +..|..+.|.|+..
T Consensus        73 ~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g  138 (659)
T PRK14867         73 YKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTG  138 (659)
T ss_pred             EEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcC
Confidence            4599999999999999999884 333333322 246788999998655    45688888988864

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

Probab=84.61  E-value=1.2  Score=36.13  Aligned_cols=60  Identities=18%  Similarity=0.138  Sum_probs=40.7

Q ss_pred             CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993           25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC   86 (666)
Q Consensus        25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~   86 (666)
                      .+...+.|.|+|.||++..+..+....  .+.......+.+|.||+.+   .-++|..+.+-+..
T Consensus        31 ~~~~~v~i~d~g~g~~~~~~~~~~~~~--~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~   93 (103)
T cd00075          31 GDHLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEP   93 (103)
T ss_pred             CCEEEEEEEeCCCCCCHHHHHHHhhhh--hcCCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            345678899999999999988877532  1112234567889999854   23345677776654

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=84.55  E-value=13  Score=42.41  Aligned_cols=66  Identities=23%  Similarity=0.337  Sum_probs=27.5

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993          589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL  654 (666)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~  654 (666)
                      .|+..|.+.+...++++++...+...||.=..--+..-...+|.+.+-+..--..|+||-|||+-+
T Consensus       382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl  447 (493)
T KOG0804|consen  382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL  447 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444444444444433333333333222222222223333222222233467777776643

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=84.47  E-value=3.4  Score=46.47  Aligned_cols=80  Identities=30%  Similarity=0.422  Sum_probs=52.5

Q ss_pred             hhhhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005993          561 ANLGQLKQENHELKKRLEKKEGELQEER-ERCRSLEA----------QL-KVMQQTIEELNKEQESLIDIFAEERDRRER  628 (666)
Q Consensus       561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~----------~~-~~~~~~~~~~~keq~~li~~f~eer~~~~~  628 (666)
                      ..++||++|-..|..-|..-+|=+...+ .|.+.||.          || .++-+--.++.+|||+|++-+=---|.-++
T Consensus       136 rkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~  215 (552)
T KOG2129|consen  136 RKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQ  215 (552)
T ss_pred             HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3499999888888544443333222222 33333332          22 223333456889999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 005993          629 EEENLRKKIKDA  640 (666)
Q Consensus       629 e~~~lr~kl~~~  640 (666)
                      |..-|.+||.+-
T Consensus       216 ekr~Lq~KlDqp  227 (552)
T KOG2129|consen  216 EKRYLQKKLDQP  227 (552)
T ss_pred             HHHHHHHHhcCc
Confidence            999999999643

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=84.44  E-value=8.8  Score=33.02  Aligned_cols=61  Identities=23%  Similarity=0.342  Sum_probs=45.6

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993          592 RSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK  656 (666)
Q Consensus       592 ~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~  656 (666)
                      +.|+.+++.+.+-.+++..|...|-.-...    -..|-..|..|...|.+-|..++.+|+++|.
T Consensus         3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~----~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449         3 QALAAQVEHLLEYLERLKSENRLLRAQEKT----WREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            467788888888777777777766433222    2234456999999999999999999999885

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF15236 CCDC66: Coiled-coil domain-containing protein 66

Probab=84.34  E-value=33  Score=34.19  Aligned_cols=42  Identities=29%  Similarity=0.471  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005993          604 TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQ  645 (666)
Q Consensus       604 ~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~  645 (666)
                      .-+-+-.|++.|-.-|-+|+.+.-+=|+....|....-.+||
T Consensus        88 EE~Rl~rere~~q~~~E~E~~~~~~KEe~~~~k~~~l~e~~q  129 (157)
T PF15236_consen   88 EEERLAREREELQRQFEEEQRKQREKEEEQTRKTQELYEAMQ  129 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334467778888888888887766666666666665555554

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=84.34  E-value=15  Score=42.61  Aligned_cols=99  Identities=24%  Similarity=0.366  Sum_probs=78.5

Q ss_pred             hhhhhhhhh---hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHH
Q 005993          562 NLGQLKQEN---HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER---EEENLRK  635 (666)
Q Consensus       562 ~~~~~~~e~---~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~---e~~~lr~  635 (666)
                      ++|+|++-|   .++.|-|.++..++.+-.+.+-+|..||-++|+|+..+--|-|.|..++.+-.|+.++   |++.|..
T Consensus       203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD  282 (596)
T KOG4360|consen  203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED  282 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            388888877   4677888999999988889999999999999999999999999999999888887765   6667777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCC
Q 005993          636 KIKDASDTIQDLLDKIKLLEKMKTP  660 (666)
Q Consensus       636 kl~~~~~~i~~~~~~~~~~~~~~~~  660 (666)
                      |.-|-....-+--|.|+.++.--.|
T Consensus       283 kyAE~m~~~~EaeeELk~lrs~~~p  307 (596)
T KOG4360|consen  283 KYAECMQMLHEAEEELKCLRSCDAP  307 (596)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCc
Confidence            7766665555555666666543333

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=84.22  E-value=8  Score=43.44  Aligned_cols=97  Identities=18%  Similarity=0.355  Sum_probs=50.9

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE------ERDRREREEENLRKK  636 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e------er~~~~~e~~~lr~k  636 (666)
                      ++-+++.-...++.|.++.  +....|+.-.|..+..+++.+++.+.+|+-.+-..+..      +++.--+|-..|+++
T Consensus         4 ~k~ir~n~~~v~~~l~~R~--~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~   81 (425)
T PRK05431          4 IKLIRENPEAVKEALAKRG--FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEE   81 (425)
T ss_pred             HHHHHhCHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence            4556555556677777762  11224444455555555555555555555544444443      222233344556666


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993          637 IKDASDTIQDLLDKIKLLEKMKTPSI  662 (666)
Q Consensus       637 l~~~~~~i~~~~~~~~~~~~~~~~~~  662 (666)
                      |++.-..+.++-+++..+- ++.||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~iPN~  106 (425)
T PRK05431         82 IKALEAELDELEAELEELL-LRIPNL  106 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            6666666666666665533 555654

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=84.21  E-value=5.8  Score=49.61  Aligned_cols=69  Identities=26%  Similarity=0.430  Sum_probs=42.6

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhh---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          584 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF----AEERDRR---------EREEENLRKKIKDASDTIQDLLDK  650 (666)
Q Consensus       584 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f----~eer~~~---------~~e~~~lr~kl~~~~~~i~~~~~~  650 (666)
                      +..|.++.+.|++++.+.+..++.+.+....+-|..    ++.+.-.         -.++..||+..++-+..||++++.
T Consensus       503 ~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~  582 (1317)
T KOG0612|consen  503 LSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEE  582 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhc
Confidence            444557777777777777777777655554443221    1111111         123567888888999999988884


Q ss_pred             Hh
Q 005993          651 IK  652 (666)
Q Consensus       651 ~~  652 (666)
                      .+
T Consensus       583 ~~  584 (1317)
T KOG0612|consen  583 NR  584 (1317)
T ss_pred             cc
Confidence            43

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.15  E-value=3.2  Score=53.38  Aligned_cols=100  Identities=23%  Similarity=0.358  Sum_probs=64.7

Q ss_pred             ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH-------------------HHHHHH
Q 005993          558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ-------------------ESLIDI  618 (666)
Q Consensus       558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq-------------------~~li~~  618 (666)
                      .|+.-|++++++...+++.+.+.+..+.+-..+-+++...+++++++++++..+-                   +-|-.-
T Consensus       989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~ 1068 (1486)
T PRK04863        989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHAR 1068 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHH
Confidence            3555667777777777777777666654444444556666665555555554433                   333344


Q ss_pred             HHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005993          619 FAEERDRR----------EREEENLRKKIKDASDTIQDLLDKIKLLEKM  657 (666)
Q Consensus       619 f~eer~~~----------~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~  657 (666)
                      ++.-|.||          ..|-++|.++|+.+.+.+.++.+.|+.+...
T Consensus      1069 l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863       1069 LSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444          3577899999999999999999888876544

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=84.10  E-value=6.4  Score=43.31  Aligned_cols=86  Identities=29%  Similarity=0.360  Sum_probs=44.1

Q ss_pred             hhhhhhhhhHHHHHHHHhHHh--------------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 005993          563 LGQLKQENHELKKRLEKKEGE--------------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD----  624 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~--------------~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~----  624 (666)
                      .+||+-.|..|++-|-...+.              +.+-.+.+..|+-||++++++..|+..|-..|-.-++|++.    
T Consensus       101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~  180 (401)
T PF06785_consen  101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE  180 (401)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555554433332              23333555556666665555555544444444444444433    


Q ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHHHH
Q 005993          625 -----------------RREREEENLRKKIKDASDTIQDLL  648 (666)
Q Consensus       625 -----------------~~~~e~~~lr~kl~~~~~~i~~~~  648 (666)
                                       .|..---+|+.|..|-...|..||
T Consensus       181 L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL  221 (401)
T PF06785_consen  181 LNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL  221 (401)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             233334456667666666666665

>PLN02320 seryl-tRNA synthetase

Probab=83.95  E-value=13  Score=43.04  Aligned_cols=97  Identities=15%  Similarity=0.307  Sum_probs=58.4

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE-----ERDRREREEENLRKKI  637 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e-----er~~~~~e~~~lr~kl  637 (666)
                      ++.+++.-..+++.|.++--++.  +|..-.|.++...++++++++..|+-++..-+.+     ++..--+|...|+++|
T Consensus        69 ~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i  146 (502)
T PLN02320         69 FKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGL  146 (502)
T ss_pred             HHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Confidence            67777766777888887753322  5555556666666666666666666666555554     2222223556666677


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993          638 KDASDTIQDLLDKIKLLEKMKTPSI  662 (666)
Q Consensus       638 ~~~~~~i~~~~~~~~~~~~~~~~~~  662 (666)
                      ++.-..++++-+++..+- +..||.
T Consensus       147 ~~le~~~~~~~~~l~~~~-l~iPN~  170 (502)
T PLN02320        147 VTLEEDLVKLTDELQLEA-QSIPNM  170 (502)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            666666666666666533 555654

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=83.55  E-value=15  Score=42.92  Aligned_cols=90  Identities=30%  Similarity=0.459  Sum_probs=49.2

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKD  639 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~~~~~e~~~lr~kl~~  639 (666)
                      +....+|+.+|..-...++++...-......|+++|...+++.+.+..+++.+   .+...+|++--..+.+.++.++++
T Consensus       145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~  224 (546)
T PF07888_consen  145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRE  224 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555443333555556666666555555554444433   344556666655566666666666


Q ss_pred             HHHHHHHHHHHHh
Q 005993          640 ASDTIQDLLDKIK  652 (666)
Q Consensus       640 ~~~~i~~~~~~~~  652 (666)
                      --..|+.|..++.
T Consensus       225 LEedi~~l~qk~~  237 (546)
T PF07888_consen  225 LEEDIKTLTQKEK  237 (546)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655553

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=83.49  E-value=14  Score=37.61  Aligned_cols=81  Identities=30%  Similarity=0.478  Sum_probs=48.5

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHh---HHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005993          562 NLGQLKQENHELKKRLEKKEGE---LQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE  631 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~---~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~  631 (666)
                      .+..+.+||..|+|=|.+.+++   |++++       ...+.+..++..++++|..+..|.+.|-.-|..=    .+|-.
T Consensus        49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl----e~Erd  124 (201)
T PF13851_consen   49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKL----EQERD  124 (201)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            3445555666666666655554   33333       2234567777888888888888888887777643    23334


Q ss_pred             HHHHHHHHHHHHHHH
Q 005993          632 NLRKKIKDASDTIQD  646 (666)
Q Consensus       632 ~lr~kl~~~~~~i~~  646 (666)
                      .|..|...|...+|.
T Consensus       125 eL~~kf~~~i~evqQ  139 (201)
T PF13851_consen  125 ELYRKFESAIQEVQQ  139 (201)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            466666655555543

>PHA02562 46 endonuclease subunit; Provisional

Probab=83.41  E-value=13  Score=42.07  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=15.4

Q ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Q 005993           27 FHCICFADNGGGMNPDKMRHCMSL   50 (666)
Q Consensus        27 ~~~L~I~DDG~GMd~~el~~~msf   50 (666)
                      +..+.+-+||.|  -..+..||.|
T Consensus        28 g~~~i~G~NG~G--KStll~aI~~   49 (562)
T PHA02562         28 KKTLITGKNGAG--KSTMLEALTF   49 (562)
T ss_pred             CEEEEECCCCCC--HHHHHHHHHH
Confidence            456777788888  4667777753

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=83.40  E-value=12  Score=45.19  Aligned_cols=20  Identities=10%  Similarity=0.167  Sum_probs=11.6

Q ss_pred             HHhhcCCCCCHHHHHHHHhh
Q 005993          145 TIVQWSPFSSEADLLHQFNL  164 (666)
Q Consensus       145 iIlkySPF~sE~eLl~Qfd~  164 (666)
                      .+...+|+.+..++...++.
T Consensus        30 ~l~~l~P~~~~~~i~~~l~~   49 (782)
T PRK00409         30 KVLQLDPETDFEEVEELLEE   49 (782)
T ss_pred             HHHcCCCCCCHHHHHHHHHH
Confidence            44556677666665555544

>TIGR01069 mutS2 MutS2 family protein

Probab=83.32  E-value=10  Score=45.74  Aligned_cols=14  Identities=14%  Similarity=-0.009  Sum_probs=5.4

Q ss_pred             CCCCCHHHHHHHHh
Q 005993          150 SPFSSEADLLHQFN  163 (666)
Q Consensus       150 SPF~sE~eLl~Qfd  163 (666)
                      .|..+..++...++
T Consensus        35 ~P~~~~~~i~~~l~   48 (771)
T TIGR01069        35 KPPKSVEESKEIII   48 (771)
T ss_pred             CCCCCHHHHHHHHH
Confidence            34444333333333

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK09470 cpxA two-component sensor protein; Provisional

Probab=83.29  E-value=0.89  Score=48.68  Aligned_cols=70  Identities=13%  Similarity=0.053  Sum_probs=45.0

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC   86 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~   86 (666)
                      ++|....-.+.-.|.|.|||.||+++.+.+...-.++........-+.+|.||.-+   ...+|..+.|-+..
T Consensus       373 i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~  445 (461)
T PRK09470        373 IEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSP  445 (461)
T ss_pred             EEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECC
Confidence            34443223345579999999999999998887544443321223456789998642   34567777777664

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=83.21  E-value=6.6  Score=42.93  Aligned_cols=71  Identities=30%  Similarity=0.508  Sum_probs=54.1

Q ss_pred             HHHHHhhhcHHHHHH----HHHHHHHHHH--------------HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH
Q 005993          585 QEERERCRSLEAQLK----VMQQTIEELN--------------KEQESLIDIFAEERDRR---EREEENLRKKIKDASDT  643 (666)
Q Consensus       585 ~~e~~~~~~l~~~~~----~~~~~~~~~~--------------keq~~li~~f~eer~~~---~~e~~~lr~kl~~~~~~  643 (666)
                      +.|+|.-|...+||+    .++++.++++              +++.+|+.++++-|++-   ..|.+.||.||.||-.-
T Consensus        22 q~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD  101 (319)
T PF09789_consen   22 QSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD  101 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            666777777777775    4455677777              58889999998877653   45778999999999999


Q ss_pred             HHHHHHHHhhhh
Q 005993          644 IQDLLDKIKLLE  655 (666)
Q Consensus       644 i~~~~~~~~~~~  655 (666)
                      |+=|-+++...+
T Consensus       102 ~KlLR~~la~~r  113 (319)
T PF09789_consen  102 IKLLREKLARQR  113 (319)
T ss_pred             HHHHHHHHHhhh
Confidence            988888887654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.15  E-value=9.1  Score=39.30  Aligned_cols=45  Identities=13%  Similarity=0.184  Sum_probs=23.7

Q ss_pred             hhhhhHHHHHHHHhHHhHHH---HH-HhhhcHHHHHHHHHHHHHHHHHH
Q 005993          567 KQENHELKKRLEKKEGELQE---ER-ERCRSLEAQLKVMQQTIEELNKE  611 (666)
Q Consensus       567 ~~e~~~~~~~~~~~~~~~~~---e~-~~~~~l~~~~~~~~~~~~~~~ke  611 (666)
                      =....++++||.++|.++..   ++ +-...+..+..++++++++++++
T Consensus        85 Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  133 (206)
T PRK10884         85 LSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSV  133 (206)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            35567888888877766532   22 12222334444455555554433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=82.88  E-value=11  Score=47.54  Aligned_cols=60  Identities=15%  Similarity=0.366  Sum_probs=41.3

Q ss_pred             cchhhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          559 LGANLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDI  618 (666)
Q Consensus       559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~  618 (666)
                      |+.+-.++...+.+.++++..++..+..||       +....|..+++.++++|+...+.+.-+++-
T Consensus       734 i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY  800 (1201)
T PF12128_consen  734 IEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEY  800 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334444555566666677777777777777       567778888888888888777776666553

>smart00502 BBC B-Box C-terminal domain

Probab=82.85  E-value=34  Score=30.36  Aligned_cols=81  Identities=15%  Similarity=0.279  Sum_probs=41.9

Q ss_pred             hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI--------EELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~--------~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      ..|+.++..++..+..=-+.++.|+.+.+.++++|        +.++++...|++-+.+++.++-..-......|.....
T Consensus        10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~   89 (127)
T smart00502       10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQE   89 (127)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444333344444444444444333        4456666777777777776666555555555554444


Q ss_pred             HHHHHHHHH
Q 005993          643 TIQDLLDKI  651 (666)
Q Consensus       643 ~i~~~~~~~  651 (666)
                      .+..+.+-+
T Consensus        90 ~l~~~~~~~   98 (127)
T smart00502       90 KLSHAINFT   98 (127)
T ss_pred             HHHHHHHHH
Confidence            444444443

Coiled coil region C-terminal to (some) B-Box domains

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=82.84  E-value=8.1  Score=40.17  Aligned_cols=69  Identities=32%  Similarity=0.394  Sum_probs=41.7

Q ss_pred             hhhHHHHHHHH---hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHH
Q 005993          569 ENHELKKRLEK---KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA---EERDRREREEENLRKKI  637 (666)
Q Consensus       569 e~~~~~~~~~~---~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~---eer~~~~~e~~~lr~kl  637 (666)
                      ||..+|+-+..   +|++.....++-+.|+++++.-+.+||.+++.-++|.--+.   -|=||--.|-++||+.+
T Consensus       135 ~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  135 ENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            66677666654   34445555566777888888888888887777666654433   24444444444444443

>TIGR01386 cztS_silS_copS heavy metal sensor kinase

Probab=82.84  E-value=1.1  Score=47.66  Aligned_cols=69  Identities=13%  Similarity=0.155  Sum_probs=45.6

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEe
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFS   84 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfS   84 (666)
                      .++|.+..-.+...|.|.|||.||+++.+.++..-+++.+......-+..|.||..+.   -++|-.+.|-+
T Consensus       374 ~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~  445 (457)
T TIGR01386       374 TITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES  445 (457)
T ss_pred             eEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe
Confidence            4566554334556899999999999999999886566544221223455788887432   34566676666

Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=82.80  E-value=15  Score=42.67  Aligned_cols=103  Identities=24%  Similarity=0.410  Sum_probs=74.7

Q ss_pred             cchhhhhhhhhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHH--------------HHHH---HHHHH
Q 005993          559 LGANLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELN--------------KEQE---SLIDI  618 (666)
Q Consensus       559 ~~~~~~~~~~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~--------------keq~---~li~~  618 (666)
                      +...|.+++++|..|+.-|.++..+.   ..|.+..+.++.+++++++.++++.              ++.+   .=++.
T Consensus       315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee  394 (569)
T PRK04778        315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE  394 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34558999999999999999998882   5667777777777777766665322              2222   23456


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcCCCC
Q 005993          619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE----KMKTPS  661 (666)
Q Consensus       619 f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~----~~~~~~  661 (666)
                      +.+++..-....+.||+.-.+|-+.|+.+-.+|+...    ++..|.
T Consensus       395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpg  441 (569)
T PRK04778        395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPG  441 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            6777777778888899998999999988888887554    444554

>PRK10780 periplasmic chaperone; Provisional

Probab=82.67  E-value=15  Score=35.95  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=38.8

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhh---h-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERC---R-SL-EAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKK  636 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~---~-~l-~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~-~~lr~k  636 (666)
                      -++|+.+.......|++++.+++.+.++-   . .| +.+.++.+++|....++.......|.++-.+|.+|+ ..+..|
T Consensus        45 ~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~k  124 (165)
T PRK10780         45 SKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILTR  124 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666655444221   1 11 122233344444444444444555655554444443 555555


Q ss_pred             HHHHHHH
Q 005993          637 IKDASDT  643 (666)
Q Consensus       637 l~~~~~~  643 (666)
                      +.+|...
T Consensus       125 i~~ai~~  131 (165)
T PRK10780        125 IQTAVKS  131 (165)
T ss_pred             HHHHHHH
Confidence            5554443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.40  E-value=14  Score=39.95  Aligned_cols=41  Identities=32%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993          616 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK  656 (666)
Q Consensus       616 i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~  656 (666)
                      |..+..+-.....|-+.|..++++...-+++++++|+.+++
T Consensus       225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK  265 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555556666666666666666667666666654

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=82.11  E-value=14  Score=36.58  Aligned_cols=72  Identities=29%  Similarity=0.434  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHH
Q 005993          569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR-KKIKDASDTI  644 (666)
Q Consensus       569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr-~kl~~~~~~i  644 (666)
                      |..-++.++...--+|..=.--|+.-|.++.+|+.+.+|.|||-..|+..+-|    --.|-|.|| +||++-|.+|
T Consensus        85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~e----Lv~eSE~~rmKKLEELsk~i  157 (159)
T PF04949_consen   85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLME----LVSESERLRMKKLEELSKEI  157 (159)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhc
Confidence            33333444433333333222567777888888889999999998888877766    345555665 6788888776

This entry represents proteins annotated as RAB6-interacting golgins.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.01  E-value=14  Score=33.26  Aligned_cols=98  Identities=22%  Similarity=0.397  Sum_probs=55.6

Q ss_pred             hhhhhhhhhHHHHHHHHhH--HhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKE--GELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK  636 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~--~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~k  636 (666)
                      |+.+++--...++.|.++-  ...-.++    ++.+.|..++++++.+-.++.|+=-.+...= ++++.--.|-..|+++
T Consensus         4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~   82 (108)
T PF02403_consen    4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEE   82 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHH
Confidence            5566665556677777663  1222222    5566666666666665555555433222211 4555566677777888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993          637 IKDASDTIQDLLDKIKLLEKMKTPSI  662 (666)
Q Consensus       637 l~~~~~~i~~~~~~~~~~~~~~~~~~  662 (666)
                      +++.-..+.++-+++..+- +..||+
T Consensus        83 i~~le~~~~~~e~~l~~~l-~~iPNi  107 (108)
T PF02403_consen   83 IKELEEQLKELEEELNELL-LSIPNI  107 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-CTS---
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence            8777777777777777654 556654

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK09303 adaptive-response sensory kinase; Validated

Probab=81.81  E-value=2.1  Score=46.16  Aligned_cols=60  Identities=13%  Similarity=0.074  Sum_probs=42.7

Q ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeeec
Q 005993           26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCCC   87 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~~   87 (666)
                      +.-.|.|.|||.||+++.+.++..-.++.+.  ....+.+|.||-   ...-.+|..+.|-|...
T Consensus       304 ~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~  366 (380)
T PRK09303        304 QKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPG  366 (380)
T ss_pred             CEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCC
Confidence            3457999999999999999988865444332  223456899984   34446788888877643

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=81.81  E-value=17  Score=38.92  Aligned_cols=63  Identities=21%  Similarity=0.262  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993          594 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK  656 (666)
Q Consensus       594 l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~  656 (666)
                      |++|+.+++..-..|.-||+.+.+-|---|...-+-++.|+.-|-..-..-..|-+.|+.||.
T Consensus        57 ~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ  119 (333)
T KOG1853|consen   57 LETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ  119 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444556679999999999999999888888887665433333344445555553

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.80  E-value=22  Score=38.60  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993          591 CRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK  656 (666)
Q Consensus       591 ~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~  656 (666)
                      +..|+.++.+++.++++++++.+.    |-.+++-...|--.+.+.+....+.++-+.++|..|++
T Consensus        73 ~~~l~~el~~le~e~~~l~~eE~~----~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   73 REELDQELEELEEELEELDEEEEE----YWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445566666666666666554443    33334444444444444555555555555555555543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=81.01  E-value=34  Score=34.90  Aligned_cols=50  Identities=32%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993          562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE  611 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke  611 (666)
                      .|+.||+|..++|.+....+..+..=...++.|.+-|+.|++..+++.++
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~   77 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ   77 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            69999999999999988888776554455666655555555555555443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.86  E-value=8.5  Score=47.03  Aligned_cols=74  Identities=28%  Similarity=0.402  Sum_probs=38.7

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      ++||.+.|..||+-|-|+..-.-.|       .-.-+.+++.+|..+.|-+-|+-           -.|+|..++..|-+
T Consensus       370 fkqlEqqN~rLKdalVrLRDlsA~e-------k~d~qK~~kelE~k~sE~~eL~r-----------~kE~Lsr~~d~aEs  431 (1243)
T KOG0971|consen  370 FKQLEQQNARLKDALVRLRDLSASE-------KQDHQKLQKELEKKNSELEELRR-----------QKERLSRELDQAES  431 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHHHHHhhHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            5566666666665555443211111       11113344445555555444432           24567777777777


Q ss_pred             HHHHHHHHHhhh
Q 005993          643 TIQDLLDKIKLL  654 (666)
Q Consensus       643 ~i~~~~~~~~~~  654 (666)
                      +|.||-|||.|.
T Consensus       432 ~iadlkEQVDAA  443 (1243)
T KOG0971|consen  432 TIADLKEQVDAA  443 (1243)
T ss_pred             HHHHHHHHHHHh
Confidence            777777777653

>PRK02224 chromosome segregation protein; Provisional

Probab=80.84  E-value=19  Score=43.36  Aligned_cols=33  Identities=9%  Similarity=0.266  Sum_probs=14.6

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE  621 (666)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e  621 (666)
                      .....|.+++..++++++.+.++-+.|-+.+.+
T Consensus       213 ~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~e  245 (880)
T PRK02224        213 SELAELDEEIERYEEQREQARETRDEADEVLEE  245 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444433

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []

Probab=80.66  E-value=1.6  Score=38.56  Aligned_cols=25  Identities=36%  Similarity=0.582  Sum_probs=21.9

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHhHHH
Q 005993          562 NLGQLKQENHELKKRLEKKEGELQE  586 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~~~~  586 (666)
                      +|..|.+||..||+||++.|++|++
T Consensus         1 li~ei~eEn~~Lk~eiqkle~ELq~   25 (76)
T PF07334_consen    1 LIHEIQEENARLKEEIQKLEAELQQ   25 (76)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677899999999999999988865

This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=80.48  E-value=6.1  Score=42.93  Aligned_cols=46  Identities=24%  Similarity=0.435  Sum_probs=32.7

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993          589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK  638 (666)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~  638 (666)
                      .....|+.+++..+++|+.+.+    ||+.++.|+.|-...-+.|..+++
T Consensus       263 ~e~~~l~~~~~~~~~kl~rA~~----Li~~L~~E~~RW~~~~~~l~~~~~  308 (344)
T PF12777_consen  263 KEKQELEEEIEETERKLERAEK----LISGLSGEKERWSEQIEELEEQLK  308 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccHHH----HHhhhcchhhhHHHHHHHHHHHhc
Confidence            3444555555555555555544    899999999999888888877766

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.35  E-value=5.6  Score=48.51  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=76.2

Q ss_pred             cCCCCCccCccccchhhhhhh-------hhhhHHHHHHHHhHHhHH----HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993          547 VNYPEHFLSDCSLGANLGQLK-------QENHELKKRLEKKEGELQ----EERERCRSLEAQLKVMQQTIEELNKEQESL  615 (666)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~~~~~~~~~~~~----~e~~~~~~l~~~~~~~~~~~~~~~keq~~l  615 (666)
                      ++|-.-++.+.  ++.|++||       +|.+|++=|+...|..|.    .+=++.+.+++.+++.++.|---.||-+-.
T Consensus       950 aegL~~tle~r--e~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeet 1027 (1243)
T KOG0971|consen  950 AEGLGLTLEDR--ETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEET 1027 (1243)
T ss_pred             hhhhhhhHHhh--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566666  77787776       467777778877777664    344788889999999999988888999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005993          616 IDIFAEERDRREREEENLRKKIKDASDTIQ  645 (666)
Q Consensus       616 i~~f~eer~~~~~e~~~lr~kl~~~~~~i~  645 (666)
                      .|.++-+-+.-+.|.+.|+.+|+--|+-||
T Consensus      1028 mdaLq~di~~lEsek~elKqrl~~~~~k~q 1057 (1243)
T KOG0971|consen 1028 MDALQADIDQLESEKAELKQRLNSQSKKTQ 1057 (1243)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhcccccC
Confidence            999999999999999999999876665544

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.20  E-value=38  Score=32.87  Aligned_cols=50  Identities=20%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ  612 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq  612 (666)
                      ..+|+..+..|..|...+|.++..=-.|+..|+.+|+.++.+|.+++...
T Consensus        16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l   65 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL   65 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666654444566666666666665555554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK09039 hypothetical protein; Validated

Probab=80.02  E-value=15  Score=40.33  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI  618 (666)
Q Consensus       574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~  618 (666)
                      ..|+...+++|..++..-...--+++-++++|+.+.+...+|=..
T Consensus       115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~  159 (343)
T PRK09039        115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA  159 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333343333333333445566666776666655544333

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional

Probab=80.01  E-value=1.1  Score=48.39  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeeec
Q 005993           24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCCC   87 (666)
Q Consensus        24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~~   87 (666)
                      -.+...+.|.|||.||+++++.+...=.++.+.......|..|.||..   -.-++|-.+.+-+...
T Consensus       381 ~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~  447 (466)
T PRK10549        381 RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPF  447 (466)
T ss_pred             cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCC
Confidence            345567899999999999999887743333322112245667888753   3345677777777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	666
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	1e-07
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	1e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	2e-04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	9e-07
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-05
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	2e-06
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	3e-06
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	5e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	6e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	8e-04
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	2e-04
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	3e-04
1u2m_A	143	Histone-like protein HLP-1; coiled coil, chaperone	3e-04
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	4e-04
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	4e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	4e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 558  SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
             L   + +L+ +  ELK +L KKE ELQ    R     +Q     + I EL      L +
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 618  IFAEERDRR---EREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
                E+  R   E+++ +L ++++     ++D LD     ++++ 
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 565  QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
            + +    EL+ RL+K+E   QE  +  R LE +   + + I EL  +   L      +  
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL----KAQLA 1091

Query: 625  RREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
            ++E E +    +++D +    + L KI+ LE 
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELES 1123

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 8e-08
 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 565  QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAE 621
             L+++  E +   +K + E      + + +E  + +M+    +L KE++ L   +     
Sbjct: 959  DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018

Query: 622  ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
                 E + +NL K        I +L  ++K  EK +
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 17/112 (15%)

Query: 565  QLKQENHELKKRLEKKE---GELQEE----RERCRSLEAQLKVMQQTIEELNKEQESL-- 615
            +L++  HE++ R+E++E    +LQ E    +++   LE QL+  +   ++L  E+ +   
Sbjct: 924  ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983

Query: 616  --------IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
                    I I  ++ ++  +E + L +++ D +  + +  +K K L K+K 
Sbjct: 984  KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 558  SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
             L   L + ++   EL+K   K EGE  +  E+   L+AQ+  ++  + +  +E ++ + 
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 618  IFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
               +E  ++     N  KKI++    I DL + ++  +  + 
Sbjct: 1103 RLEDETSQK----NNALKKIRELESHISDLQEDLESEKAARN 1140

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 563  LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
              +L  +  EL++ L + E  ++EE ER + L+A+ K MQQ + +L ++ E         
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE----EAA 970

Query: 623  RDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
            R + + E+     KIK   D I  + D+   L K +
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 565  QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE-ER 623
            +L +E   L++R+      L EE E+ ++L       +  I EL    +       E E+
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 624  DRREREEEN--LRKKIKDASDTIQDLLDKIKLLEK 656
             +R+ E E+  L ++I +    I +L  ++   E+
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 17/99 (17%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 561  ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESLID 617
            A   +L+ E      +++K E ++    ++   L  + K++++ + +L     E+E    
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 618  IFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
               + +++ E     L  ++K    + Q+L    + LE 
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 558  SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
            +    + +++ +   ++ +  K   E +   ER   L   L   ++  + L K +     
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 618  IFAEERDRREREE---ENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
            + +E   R ++EE   + L K  +       DL ++I  L+    
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 14/72 (19%), Positives = 33/72 (45%)

Query: 565  QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
               ++  EL+  +   + +L+ E+      E Q + + + +E L  E E  +D  A +++
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

Query: 625  RREREEENLRKK 636
             R  + ++   K
Sbjct: 1173 LRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 17/97 (17%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
           QL +E + L+++L+ +     E  E    L A+ + +++ + E+    E       EE  
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE------EEER 942

Query: 625 RREREEEN--LRKKIKDASDTIQDLLDKIKLLEKMKT 659
            ++ + E   +++++ D  + +++     + L+  K 
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 565  QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
             L+ +  +L+++++++  E +   E+  +LE          E+L  + E L  +  EE  
Sbjct: 925  GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY---STETEKLRSDVERL-RMSEEEAK 980

Query: 625  RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
                   +L+++I      +     + K +E+   
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 558  SLGANLGQLKQENHELKKRLEKKEGELQEERE-------RCRSLEAQLKVMQQTIEELNK 610
            SL   +  L+       ++L      L+   E       R  SL+ ++  +++ + +   
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Query: 611  EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
            E++++ +   + +   E+    L+++        ++L  +I    K
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 575 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR 634
           K+L+ +   ++  ++    LE ++  +Q+ I+E NKE +SL++           E E LR
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966

Query: 635 KKIKDAS---DTIQDLLDKIKLLEK 656
             ++      +  ++  +++  L++
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQE 991

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 558  SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
             L   L Q + E   +++  +K + E ++       L+ Q  +++   EELN+       
Sbjct: 995  KLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAK 1051

Query: 618  IFAEERDRR-EREEENLRKKIKDASDTIQ 645
               E  +++   E + L   + D     Q
Sbjct: 1052 EITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 565  QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE----ELNKEQESLIDIFA 620
                    L++ + K   EL + +   +++E      +   E    EL ++   L     
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL----- 1035

Query: 621  EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
                  + E+E L ++I D +  I + ++K  + E  +
Sbjct: 1036 ------KTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 19/95 (20%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAE 621
           +L  +N+ L+  + + +  L+   ER    E +   +++ ++ +    K  E+  + +++
Sbjct: 11  ELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQ 70

Query: 622 ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           + D+ E E + L  K+K+A    +     +  LEK
Sbjct: 71  KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL--- 615
           L   L  +      L+ + EK   +  +  E  + L  +LK  +   E   +    L   
Sbjct: 47  LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS 106

Query: 616 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           ID   +E   ++ + + + +++K   D +++LL K   LE 
Sbjct: 107 IDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLEN 147

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 572 ELKKRLEKKEGELQEE----RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR- 626
           E  +  E K  EL+EE        +SLEAQ +   Q  ++  +E + L D   E   R  
Sbjct: 35  ERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94

Query: 627 --EREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
             ER    L K I D  D +     K K + +  
Sbjct: 95  FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAE 621
            L QE ++L+ +++ ++  L +  ERC  L      ++  ++E+N   +++E +      
Sbjct: 45  SLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104

Query: 622 ERDRREREEENLRKKIKDASDTIQ 645
           ++ + E E   L++ I D   T+ 
Sbjct: 105 KKRKLEDECSELKRDIDDLELTLA 128

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           +  +K+E   LK+ LEK E   +E  E+  SL  +   +Q    ++  EQ++L D  AEE
Sbjct: 15  MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ---LQVQAEQDNLAD--AEE 69

Query: 623 RDRREREEEN-LRKKIKDASDTIQDLLDKIKLLEKMK 658
           R  +  + +  L  K+K+ +  ++D  +    L   K
Sbjct: 70  RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKK 106

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
           ++ ++   ++  LE+ E   +    +C  LE ++K +   ++ L  + E      +++ D
Sbjct: 164 EVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKY----SQKED 219

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           + E E + L  K+K+A    +     +  LEK
Sbjct: 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
           +    L + ++   E ++ ++  E   Q++ E+    E QLK  +   E+ +++ E +  
Sbjct: 108 TALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167

Query: 618 IFAEERDRREREEENL---RKKIKDASDTIQDLLDKIKLLEKMK 658
                    ER EE       K  +  + I+ + + +K LE   
Sbjct: 168 KLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQA 211

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAE 621
            +K++   LK   E       E     ++ E + K ++  +  L K+ ++    +D ++E
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 622 ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
                + + E   KK  DA   +  L  +I+L E+
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620
           ++L + ++     + +  + E E++      +SLEAQ +   Q  ++  +E + L D   
Sbjct: 174 SDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 233

Query: 621 EERDRREREEEN---LRKKIKDASDTIQDLLDKIKLLEKM 657
           E   R E  E +   L K I D  D +     K K + + 
Sbjct: 234 EAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 273

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKV-----------MQQTIE 606
           SL       K+ + + K+  ++   EL E +E  R LEA+L+            +Q   +
Sbjct: 7   SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQ 66

Query: 607 ELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSIRAGR 666
            L  E E+L +    +  +  ++   L   +       + L   ++ LE+      RA R
Sbjct: 67  RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 154

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 17/105 (16%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK----EQE 613
            L  +   LK+E  +    +++   ++ +E E     E +   + + +E+L      E  
Sbjct: 41  QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 100

Query: 614 SLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658
           +++    +E+   E   + L +++++    +  L  ++K L+K+ 
Sbjct: 101 NMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 135

 Score = 45.6 bits (107), Expect = 5e-06
 Identities = 18/104 (17%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK----EQE 613
            L  +   LK+E  +    +++   ++ +E E     E +   + + +E+L      E  
Sbjct: 29  QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 88

Query: 614 SLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
           +L+     E+   E   + L +++++    +  L  ++K L+K+
Sbjct: 89  NLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM-QQTIEELNKEQESLIDIFAEER 623
           +L QE   ++K  E++   LQE     + +E + +   ++ +EE N+ Q   ++    + 
Sbjct: 79  RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE--KNKI 136

Query: 624 DRREREEENLRKKIKDASDTI 644
           + R  ++   ++   D +D I
Sbjct: 137 NNRIADKAFYQQ--PD-ADII 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 72/455 (15%), Positives = 141/455 (30%), Gaps = 140/455 (30%)

Query: 63  GQYGNGFKTSTMRLGADV----------------IVFSCCCGKDGKSPTRSIGLLSYTFL 106
           G  G+G KT    +  DV                +    C      SP   + +L     
Sbjct: 157 GVLGSG-KTW---VALDVCLSYKVQCKMDFKIFWLNLKNCN-----SPETVLEMLQKLLY 207

Query: 107 R-----STGKEDIVVPMLDYEGSQQEWKKIIRSS--------LDD-WNRNVETIVQWSPF 152
           +     ++  +      L     Q E +++++S         L +  N        W+ F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-----WNAF 262

Query: 153 ------------SSEADLL---HQFNLMKDHGTRIIIYNLWEDD-QGLLELDFDSDKHDI 196
                           D L      ++  DH +      L  D+ + LL    D    D+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM----TLTPDEVKSLLLKYLDCRPQDL 318

Query: 197 --QLRGVN-----------RDEQNIKMAQHYPNSRHFLTYRHSLRSYASI---------- 233
             ++   N           RD         + N +H    + +    +S+          
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 234 LYLRL---PPGFRI------II--RGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLH 282
           ++ RL   PP   I      +I       +   +VN +     V  +P+     IP  ++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIY 432

Query: 283 MAVDVTIGFVKDAKHH---ID-VQGFNVYHKNRLIKPFWRLWNASGSDG--RGVIGV-LE 335
           +  ++ +    +   H   +D       +  + LI P+         D      IG  L+
Sbjct: 433 L--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL--------DQYFYSHIGHHLK 482

Query: 336 ANFVEPAHDKQGFERTTV-LARLEARLIQMQKDYWN------NNCHEIGYAPRRYKKYIK 388
              +E       F    +    LE ++       WN      N   ++    + YK YI 
Sbjct: 483 N--IEHPERMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQL----KFYKPYIC 535

Query: 389 DS---YDREISSKKSYPSRH--KITDSSHSDKHQL 418
           D+   Y+R +++   +  +    +  S ++D  ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 618
           +  ++ QL+  N EL++R    E    +  +    L+A L+  ++     ++    L   
Sbjct: 39  MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQAR 98

Query: 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
               ++  +  + NL K         ++  D +   EK K 
Sbjct: 99  ITSLQEEVKHLKHNLEK----VEGERKEAQDMLNHSEKEKN 135

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 39/94 (41%)

Query: 557 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 616
             L  +  Q  ++ ++L+  LE +  +   + E    L+A++  +Q+ ++ L    E + 
Sbjct: 58  RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117

Query: 617 DIFAEERDRREREEENLRKKIKDASDTIQDLLDK 650
               E +D     E+       D +  ++ L  +
Sbjct: 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           L QL+++  E    L  +       R+    +   +  ++    EL +    L       
Sbjct: 8   LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILE----NS 63

Query: 623 RDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659
           + + +++   L+  ++          + I  L+   T
Sbjct: 64  KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARIT 100

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIF 619
           L + ++   E ++ ++  E   Q++ E+    E QLK  +   E+ +++ E +   + I 
Sbjct: 26  LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 85

Query: 620 AEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655
             + +R E   E    K  +  + ++ + + +K LE
Sbjct: 86  ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M Length = 155

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 19/94 (20%), Positives = 41/94 (43%)

Query: 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
              LK       +   +     +E  +  ++LE Q K ++  ++EL ++ +   +  + +
Sbjct: 31  NKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWD 90

Query: 623 RDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656
           R R E+E E  ++ ++ A D       +   LEK
Sbjct: 91  RQRLEKELEEKKEALELAIDQASRDYHRATALEK 124

>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A Length = 143

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSL--EAQLKVMQQTIEELNKEQESLIDIFAEE 622
            L+ E       L++ E +LQ + ++ +S+   +    +++ +    +        F ++
Sbjct: 27  TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQD 86

Query: 623 RDRREREEEN-LRKKIKDASDTI 644
           R RR  EE   L  +I+ A  ++
Sbjct: 87  RARRSNEERGKLVTRIQTAVKSV 109

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 97

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 559 LGANLGQLKQENHELKKRLEKKEGE-------LQEERERCRSLEAQLKVMQQTIEELN-- 609
           LG+N  QLK++ + LK+ L  ++ E       + +E E     E +   + + +E+L   
Sbjct: 3   LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62

Query: 610 --KEQESLIDIFAEERDRREREEENLRKKIKDA 640
              E  +++    +E+   E   + L +++++ 
Sbjct: 63  LFDEANNMVADARKEKYAIEILNKRLTEQLREK 95

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 555 SDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 614
           + C +   L   + +  +  + LE    +++ +      ++  +K +Q T       + +
Sbjct: 21  TTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSE---VKQLIKAIQLTYNPDESSKPN 77

Query: 615 LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
           +ID    +  +   E       I     +I+ L +      + 
Sbjct: 78  MIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQK 120

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 14/98 (14%), Positives = 33/98 (33%)

Query: 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624
            L+ E    +  L+K      + +E  +S    + ++ +   ELN    S       +  
Sbjct: 493 PLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGS 552

Query: 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 662
                 ++L   + +     + L + +K +    T   
Sbjct: 553 EVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKF 590

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 11/103 (10%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621
            +  L +E   L+  + +K  +L +      +    +  +++    L  +         +
Sbjct: 12  EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71

Query: 622 ERDRRE------------REEENLRKKIKDASDTIQDLLDKIK 652
              +              RE  +L  +   A +       +I+
Sbjct: 72  TNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIE 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	666
1y4s_A	559	Chaperone protein HTPG; HSP90, molecular chaperone	98.88
2o1u_A	666	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	98.8
2ioq_A	624	Chaperone protein HTPG; heat shock protein, HSP90;	98.71
2ior_A	235	Chaperone protein HTPG; heat shock protein, HSP90;	98.52
1yc1_A	264	HSP 86, heat shock protein HSP 90-alpha; cell-cycl	98.48
3peh_A	281	Endoplasmin homolog; structural genomics, structur	98.45
2wer_A	220	ATP-dependent molecular chaperone HSP82; ATPase, A	98.44
3nmq_A	239	Heat shock protein HSP 90-beta; ATPase, chaperone-	98.4
3ied_A	272	Heat shock protein; HSP90, chaperone, structural g	98.37
3o0i_A	256	HSP90AA1 protein; HSP90 heat-shock proteins, chape	98.36
3t0h_A	228	Heat shock protein HSP 90-alpha; chaperone, ATPase	98.35
2gqp_A	236	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	98.35
1qy5_A	269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	98.34
2cg9_A	677	ATP-dependent molecular chaperone HSP82; chaperone	98.25
1b63_A	333	MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A	97.26
3na3_A	348	DNA mismatch repair protein MLH1; MUTL protein hom	96.57
1h7s_A	365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	96.14
3h4l_A	367	DNA mismatch repair protein PMS1; ATP binding, DNA	96.11
1kij_A	390	DNA gyrase subunit B; topoisomerase, gyrase B-coum	95.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.96
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	92.52
3fv5_A	201	DNA topoisomerase 4 subunit B; topoisomerase IV B	91.65
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.16
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.16
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.69
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	89.45
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	89.1
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.83
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.13
1ei1_A	391	DNA gyrase B, GYRB; ATPase domain, dimer, isomeras	88.11
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	87.88
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.33
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	87.23
1mu5_A	471	Type II DNA topoisomerase VI subunit B; GHKL ATPas	87.19
2btz_A	394	Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo	87.06
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.71
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	86.61
2e0a_A	394	Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP	86.27
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	86.16
2q8g_A	407	[pyruvate dehydrogenase [lipoamide]] kinase isozy;	86.03
3d36_A	244	Sporulation kinase B; GHKL ATPase, four helix bund	85.9
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	85.83
2c2a_A	258	Sensor histidine kinase; phosphotransfer, PHOQ, se	85.68
1s16_A	390	Topoisomerase IV subunit B; two-domain protein com	85.64
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	85.42
3sl2_A	177	Sensor histidine kinase YYCG; ATP binding, intact	85.12
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	84.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.67
2zbk_B	530	Type 2 DNA topoisomerase 6 subunit B; DNA binding	84.51
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	84.31
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	83.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	83.56
1y8o_A	419	[pyruvate dehydrogenase [lipoamide]] kinase isozy;	83.36
3a0y_A	152	Sensor protein; ATP-LID, kinase, phosphoprotein, t	83.11
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.74
1id0_A	152	PHOQ histidine kinase; PHOQ/PHOP, signal transduct	82.73
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	82.22
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	81.64
1i58_A	189	Chemotaxis protein CHEA; beta-alpha sandwich, sign	80.87
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	80.08

>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A

Probab=98.88  E-value=1.5e-08  Score=113.13  Aligned_cols=62  Identities=27%  Similarity=0.474  Sum_probs=50.4

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC-----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~-----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+.+++..++ ++|.|.+.           .....||+||.||.| ++.+|..|.|.||+.+
T Consensus        72 ~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~  145 (559)
T 1y4s_A           72 DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG  145 (559)
T ss_dssp             TTTEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence            34699999999999999998887 67777532           123579999999997 5668999999999864

>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A

Probab=98.80  E-value=7.2e-08  Score=109.65  Aligned_cols=62  Identities=26%  Similarity=0.417  Sum_probs=40.3

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC--------------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~--------------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+.+++..+| +.|.|.+.              .....||+||.||.++ +.+|..|.|.||+.+
T Consensus        90 ~~~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySa-f~vAdkV~V~Sr~~~  166 (666)
T 2o1u_A           90 EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN  166 (666)
T ss_dssp             TTTEEEEEECSCCCCHHHHHHHTTC-------------------------------CTTGGG-GGTEEEEEEEEECTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhH-HHhcCEEEEEEeeCC
Confidence            44789999999999999999888 55555221              1234799999999987 889999999999764

>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A

Probab=98.71  E-value=1.9e-08  Score=113.65  Aligned_cols=62  Identities=27%  Similarity=0.474  Sum_probs=48.6

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC-----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~-----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+.+++..++ ++|.|.+.           .....||+||.||.| ++.+|..|.|.||+.+
T Consensus        72 ~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~  145 (624)
T 2ioq_A           72 DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG  145 (624)
T ss_dssp             TTTEEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHH-HHHHEEEEEEEEECTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHH-HHhcCCeEEEEECCCC
Confidence            44799999999999999998877 67777531           123579999999997 5568999999999864

>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}

Probab=98.52  E-value=3.1e-08  Score=99.14  Aligned_cols=62  Identities=27%  Similarity=0.477  Sum_probs=51.1

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC-----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~-----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+++++..++ ++|.|.+.           .....+|+||.||+++ +.+|..|.|.||..+
T Consensus        92 ~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~  165 (235)
T 2ior_A           92 DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAG  165 (235)
T ss_dssp             TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCC
Confidence            44579999999999999998766 78887542           1135799999999976 889999999999864

>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*

Probab=98.48  E-value=5.7e-08  Score=99.31  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=51.3

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||++++|..++ ++|.|.+.         .....||+||.||+++.| +|..|.|.||+.+
T Consensus       113 ~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~  184 (264)
T 1yc1_A          113 QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND  184 (264)
T ss_dssp             TTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTT
T ss_pred             CeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCC
Confidence            56789999999999999997776 68877542         124589999999998765 9999999999754

>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*

Probab=98.45  E-value=7.7e-08  Score=99.47  Aligned_cols=62  Identities=24%  Similarity=0.404  Sum_probs=49.9

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||++++|..+| +.|.|...          .....|||||.||+|+ |.+|..|.|.||+.+
T Consensus        91 ~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySa-f~vadkV~V~Sk~~~  163 (281)
T 3peh_A           91 EKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSA-FLVADKVIVYTKNND  163 (281)
T ss_dssp             TTTEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhh-ccccCEEEEEEecCC
Confidence            34689999999999999999877 55555321          2346899999999998 569999999999754

>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A

Probab=98.44  E-value=9.2e-08  Score=94.46  Aligned_cols=62  Identities=23%  Similarity=0.347  Sum_probs=51.1

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+++++..++ .+|+|.+.         .....||+||.||+++ +.+|..|.|.||+.+
T Consensus        71 ~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~  142 (220)
T 2wer_A           71 EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND  142 (220)
T ss_dssp             GGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCC
Confidence            56789999999999999998777 68876421         1345799999999876 789999999999754

>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1

Probab=98.40  E-value=6.5e-08  Score=97.95  Aligned_cols=62  Identities=21%  Similarity=0.378  Sum_probs=49.4

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+++++.++| +.|+|.+.         .....|||||.||+|+ +.+|..|.|.||+.+
T Consensus        84 ~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySa-f~vadkv~V~Sk~~~  155 (239)
T 3nmq_A           84 QERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVVVITKHND  155 (239)
T ss_dssp             TTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred             CccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccc-cccCCEEEEEEeeCC
Confidence            46789999999999999997765 45544321         1346899999999997 778999999999753

>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}

Probab=98.37  E-value=1.6e-07  Score=96.48  Aligned_cols=70  Identities=24%  Similarity=0.386  Sum_probs=52.4

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEe
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFS   84 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfS   84 (666)
                      .++|....=.....|.|.|||.||+.++|.++| ..++|...          .....|||||.||+|+ |.+|..|.|.|
T Consensus       118 ~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySa-FmVAdkV~V~S  196 (272)
T 3ied_A          118 KLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSS-FLVSNRVEVYT  196 (272)
T ss_dssp             GCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGG-GGTEEEEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceehee-eccCCEEEEEE
Confidence            445544111245689999999999999999987 56555321          2246799999999996 67999999999


Q ss_pred             ee
Q 005993           85 CC   86 (666)
Q Consensus        85 K~   86 (666)
                      |.
T Consensus       197 k~  198 (272)
T 3ied_A          197 KK  198 (272)
T ss_dssp             ES
T ss_pred             cC
Confidence            93

>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*

Probab=98.36  E-value=9e-08  Score=97.75  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=50.3

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||++++|..++ +.+.|...         .....||+||.||+|+.| +|..|.|.||+.+
T Consensus       105 ~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~  176 (256)
T 3o0i_A          105 QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND  176 (256)
T ss_dssp             TTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred             CceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCC
Confidence            67799999999999999998776 55554331         134689999999999855 9999999999753

>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...

Probab=98.35  E-value=1.6e-07  Score=94.29  Aligned_cols=62  Identities=21%  Similarity=0.340  Sum_probs=50.6

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+++++..++ ++|.|.+.         .....||+||.||+|+. .+|..|.|.||+.+
T Consensus        77 ~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~-~vad~v~V~Sr~~~  148 (228)
T 3t0h_A           77 QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY-LVAEKVTVITKHND  148 (228)
T ss_dssp             TTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGG-GTEEEEEEEEECTT
T ss_pred             CeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHh-ccCCEEEEEEecCC
Confidence            67799999999999999998777 56665431         12468999999999985 59999999999754

>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*

Probab=98.35  E-value=1.6e-07  Score=94.24  Aligned_cols=62  Identities=26%  Similarity=0.414  Sum_probs=47.0

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC--------------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~--------------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||++++|..++ ++|+|.+.              .....||+||.||++ .+.+|..|.|.||..+
T Consensus        77 ~~~~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S-~f~va~~v~V~Sr~~~  153 (236)
T 2gqp_A           77 EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYS-AFLVADKVIVTSKHNN  153 (236)
T ss_dssp             TTTEEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGG-GGGTEEEEEEEEECTT
T ss_pred             CCCEEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhh-HhhcCCEEEEEEeCCC
Confidence            45689999999999999998777 67777431              123479999999997 5788999999999754

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*

Probab=98.34  E-value=1.1e-07  Score=97.49  Aligned_cols=62  Identities=26%  Similarity=0.417  Sum_probs=50.4

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC--------------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~--------------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||++++|..++ ++|+|...              .....||+||.||.++ +.+|..|.|+||..+
T Consensus        73 ~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySa-f~va~~v~V~Sk~~~  149 (269)
T 1qy5_A           73 EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN  149 (269)
T ss_dssp             TTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred             CceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHH-hhccceEEEEEEecC
Confidence            56789999999999999998777 67776321              1235799999999987 668999999999764

>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=98.25  E-value=5.4e-07  Score=102.69  Aligned_cols=62  Identities=23%  Similarity=0.335  Sum_probs=50.9

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCC------C---CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAK------S---KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k------~---~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+.+++..+| +.|+|..      .   .+...|||||.||.++ +.++..|.|.||+.+
T Consensus        71 ~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~  142 (677)
T 2cg9_A           71 EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND  142 (677)
T ss_dssp             GGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCC
Confidence            44689999999999999999988 5666632      1   1235799999999977 889999999999865

>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*

Probab=97.26  E-value=0.00014  Score=76.10  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=46.3

Q ss_pred             CCcceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc------cccccccCCcccccccccCCeEEEEeeecC
Q 005993           25 WSFHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        25 ~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      .|...|.|.|||.||+++++..++ +|+.+ |...      ...+|.+|.||.+. ..++ .+.|.||..+
T Consensus        51 ~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts-K~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~  118 (333)
T 1b63_A           51 GGAKLIRIRDNGCGIKKDELALALARHATS-KIASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAE  118 (333)
T ss_dssp             GGTSEEEEEECSCCCCGGGHHHHHSTTCCS-SCCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTT
T ss_pred             CCceEEEEEEcCCCcCHHHHHHhhhccccc-CccccchhhhccccCccccchhhh-hcCC-cEEEEEecCC
Confidence            455789999999999999999998 56655 3221      13689999999654 2344 8999999865

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}

Probab=96.57  E-value=0.00065  Score=72.10  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCc------cccccccCCcccccccccCCeEEEEeeecC
Q 005993           15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      .++.|... ..|...|.|.|||.||+++++..+..-+++.|...      -...|..|.||-+.+ .++ .+.|.||..+
T Consensus        46 ~~I~I~i~-~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~-avs-~l~v~sr~~~  122 (348)
T 3na3_A           46 TSIQVIVK-EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASIS-HVA-HVTITTKTAD  122 (348)
T ss_dssp             SEEEEEEE-GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHH-HSS-EEEEEEECTT
T ss_pred             CEEEEEEE-eCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhh-ccc-EEEEEEEECC
Confidence            34444432 34556799999999999999998886555555422      135799999995443 455 7999999875

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*

Probab=96.14  E-value=0.001  Score=70.71  Aligned_cols=70  Identities=21%  Similarity=0.333  Sum_probs=43.6

Q ss_pred             hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc---c---ccccccCCcccccccccCCeEEEEeeec
Q 005993           15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA---A---NTIGQYGNGFKTSTMRLGADVIVFSCCC   87 (666)
Q Consensus        15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~---~---~~IGrYGnGfKTgSMRLGkdviVfSK~~   87 (666)
                      ..+.|.+.+ .|...|.|.|||.||+++++..+. .|..+ |...   .   ..+|.+|.||-+.+ .++ .+.|.||..
T Consensus        52 ~~I~I~i~~-~~~~~I~V~DnG~Gi~~~~l~~~f~~~~ts-K~~~~~dl~~i~s~G~rG~gl~si~-~vs-~v~v~t~~~  127 (365)
T 1h7s_A           52 TNIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTS-KIQEFADLTQVETFGFRGEALSSLC-ALS-DVTISTCHA  127 (365)
T ss_dssp             SEEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC-----------CCTTCSEEESSSSSHHHHHH-HHS-EEEEEEECT
T ss_pred             CEEEEEEEe-CCcEEEEEEECCCCcCHHHHHHHhhhcccc-ccccccchhcccccCCCCchhhhhh-hhc-cEEEEEccC
Confidence            334444422 356689999999999999998876 45444 3221   1   23677788875443 355 999999986


Q ss_pred             C
Q 005993           88 G   88 (666)
Q Consensus        88 g   88 (666)
                      +
T Consensus       128 ~  128 (365)
T 1h7s_A          128 S  128 (365)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.001  Score=70.98  Aligned_cols=72  Identities=18%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             chhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCcc------ccccccCCcccccccccCCeEEEEeeec
Q 005993           14 MLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAA------NTIGQYGNGFKTSTMRLGADVIVFSCCC   87 (666)
Q Consensus        14 a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~------~~IGrYGnGfKTgSMRLGkdviVfSK~~   87 (666)
                      |.++.|.+. -.|...|.|.|||.||+++++..+..-+++.|....      ...|..|.||-+. ..++ .+.|.||+.
T Consensus        42 a~~I~I~i~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si-~avS-~l~V~sr~~  118 (367)
T 3h4l_A           42 ANQIEIIFK-DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSL-CGIA-KLSVITTTS  118 (367)
T ss_dssp             CSEEEEEEE-TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHH-HHSS-EEEEEEESS
T ss_pred             CCEEEEEEE-eCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHh-hccC-EEEEEEEEC
Confidence            334444442 246679999999999999999888754444443221      3467788998544 4455 699999976


Q ss_pred             C
Q 005993           88 G   88 (666)
Q Consensus        88 g   88 (666)
                      +
T Consensus       119 ~  119 (367)
T 3h4l_A          119 P  119 (367)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2

Probab=95.89  E-value=0.14  Score=54.82  Aligned_cols=59  Identities=24%  Similarity=0.207  Sum_probs=39.6

Q ss_pred             eEEEEECCCCCCHHHHHH--------HHh-cCCCCCCC---ccccccccCCcccccccccCCeEEEEeeecC
Q 005993           29 CICFADNGGGMNPDKMRH--------CMS-LGYSAKSK---AANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        29 ~L~I~DDG~GMd~~el~~--------~ms-fG~s~k~~---~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      .|.|.|||.||+++++..        ++. |-...+..   .....|..|.||.... .+...+.|-|+.+|
T Consensus        65 ~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~-als~~~~v~t~~~g  135 (390)
T 1kij_A           65 SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN-ALSEWTVVEVFREG  135 (390)
T ss_dssp             CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH-HTEEEEEEEEEETT
T ss_pred             EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeec-ccccceEEEEecCC
Confidence            899999999999988643        331 21111211   1235789999998653 56677888888654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.96  E-value=0.46  Score=51.95  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=17.5

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhH
Q 005993          560 GANLGQLKQENHELKKRLEKKEGEL  584 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~  584 (666)
                      +..+.+++.+...|++++...|+.+
T Consensus       455 ~~e~~~~~~~i~~l~~~~~~~~~~l  479 (597)
T 3oja_B          455 EAEVNELRAEVQQLTNEQIQQEQLL  479 (597)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446777777777787777777665

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=92.52  E-value=1.2  Score=44.87  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      +..|..|...++.|+...|+.+..-+++...+++++++++.+++++..+-+.+..-+.++...-+.|.+.|+.+-++...
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~  171 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE  171 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555666666666666666666666666666666666666666666666666665655555556666666666666665


Q ss_pred             HH-HHHHHHHhhhh
Q 005993          643 TI-QDLLDKIKLLE  655 (666)
Q Consensus       643 ~i-~~~~~~~~~~~  655 (666)
                      .| .+||..-..+.
T Consensus       172 ~i~~~lL~~Yerir  185 (256)
T 3na7_A          172 KTEPKIYSFYERIR  185 (256)
T ss_dssp             TSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            55 35555444444

>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*

Probab=91.65  E-value=0.061  Score=52.66  Aligned_cols=78  Identities=22%  Similarity=0.179  Sum_probs=39.3

Q ss_pred             ccccccc-ccchhcccCCCCCCCcceEEEEECCCCCCHHHH--------HHHH-hcCCCCCCCc---cccccccCCcccc
Q 005993            5 VDGLFSN-SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKM--------RHCM-SLGYSAKSKA---ANTIGQYGNGFKT   71 (666)
Q Consensus         5 ~~~~~~~-a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el--------~~~m-sfG~s~k~~~---~~~IGrYGnGfKT   71 (666)
                      +|+..+. |+.+.+.|+-   .|  .+.|.|||.||+.+++        .-++ ..-.+.|...   ....|..|.|+++
T Consensus        30 iDa~~~g~a~~I~V~i~~---~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglss  104 (201)
T 3fv5_A           30 VDEALAGHAKRVDVILHA---DQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV  104 (201)
T ss_dssp             HHHHHTTCCSEEEEEECT---TS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHH
T ss_pred             HHHHhcCCCcEEEEEEeC---CC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecch
Confidence            3454443 6666666652   23  7999999999999872        2222 1111222211   2368999999986


Q ss_pred             cccccCCeEEEEeeecC
Q 005993           72 STMRLGADVIVFSCCCG   88 (666)
Q Consensus        72 gSMRLGkdviVfSK~~g   88 (666)
                      .. .+...+.|-|+.++
T Consensus       105 in-alS~~l~v~t~~~g  120 (201)
T 3fv5_A          105 VN-ALSKRVEVNVRRDG  120 (201)
T ss_dssp             HH-HTEEEEEEEEEETT
T ss_pred             hh-cccceEEEEEEecC
Confidence            54 46678899898765

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.16  E-value=1.6  Score=52.51  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=13.7

Q ss_pred             CCcceeEEEeccccc-ccccccccch
Q 005993          326 DGRGVIGVLEANFVE-PAHDKQGFER  350 (666)
Q Consensus       326 ~GrGVIGVvEanfle-PtHNKQdFe~  350 (666)
                      .....|||||+.-+| ..+|  .||.
T Consensus       428 ~~~~~IgvLDI~GFE~f~~N--sFEQ  451 (1080)
T 2dfs_A          428 KQHSFIGVLDIYGFETFEIN--SFEQ  451 (1080)
T ss_dssp             CCCEEEEEEEECCCCCCSSB--CHHH
T ss_pred             ccCceEEeeccCCccccCcC--CHHH
Confidence            346789999995333 3333  5653

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.16  E-value=3.7  Score=41.22  Aligned_cols=21  Identities=5%  Similarity=0.158  Sum_probs=10.4

Q ss_pred             hhhhhhhhhHHHHHHHHhHHh
Q 005993          563 LGQLKQENHELKKRLEKKEGE  583 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~  583 (666)
                      +++++.+..+++.|+.+.+..
T Consensus        62 ~~~~e~~i~~~~~ri~~~~~~   82 (256)
T 3na7_A           62 VSKNEQTLQDTNAKIASIQKK   82 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555554443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.69  E-value=4.7  Score=36.77  Aligned_cols=83  Identities=30%  Similarity=0.416  Sum_probs=43.2

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER-DRREREEENLRKKIKDA  640 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer-~~~~~e~~~lr~kl~~~  640 (666)
                      ++.+.++...|++.|.+.+.. +.|+ +++..|..+..+++.+|+   .|++.|-|+  ||| +|-...+..|..+|+++
T Consensus        15 ~~~~~eel~~lke~l~k~e~~-r~ele~~~~~l~~Ek~~L~~qL~---~E~~~l~e~--EE~~~~L~~~k~eLe~~l~el   88 (129)
T 2fxo_A           15 MASMKEEFTRLKEALEKSEAR-RKELEEKMVSLLQEKNDLQLQVQ---AEQDNLADA--EERCDQLIKNKIQLEAKVKEM   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence            556666667777777654433 3333 556666666666665544   355555554  333 22233334455555555


Q ss_pred             HHHHHHHHHHH
Q 005993          641 SDTIQDLLDKI  651 (666)
Q Consensus       641 ~~~i~~~~~~~  651 (666)
                      ..-+.+.-++.
T Consensus        89 ~~rleeeee~~   99 (129)
T 2fxo_A           89 NKRLEDEEEMN   99 (129)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55554443333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=89.45  E-value=0.94  Score=54.68  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=13.6

Q ss_pred             CCcceeEEEeccccc-ccccccccch
Q 005993          326 DGRGVIGVLEANFVE-PAHDKQGFER  350 (666)
Q Consensus       326 ~GrGVIGVvEanfle-PtHNKQdFe~  350 (666)
                      .....|||||+.-+| ..+|  .||.
T Consensus       455 ~~~~~IgvLDi~GFE~f~~N--sfeQ  478 (1184)
T 1i84_S          455 QGASFLGILDIAGFEIFEIN--SFEQ  478 (1184)
T ss_dssp             --CEEEEEEECCCCCCCSSB--CHHH
T ss_pred             CCcceEEEeecCCcCCCCcc--hHHH
Confidence            346799999995433 3333  5653

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=89.10  E-value=6.4  Score=38.71  Aligned_cols=74  Identities=14%  Similarity=0.266  Sum_probs=39.7

Q ss_pred             hhhhhhhhHHHHHHHHhHHhHHHHH-----------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005993          564 GQLKQENHELKKRLEKKEGELQEER-----------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN  632 (666)
Q Consensus       564 ~~~~~e~~~~~~~~~~~~~~~~~e~-----------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~  632 (666)
                      .+|+.|..+..+-=..+|.+|..|+           .++..|..+++.++.+++....|-...|..+..|-..--.+.+.
T Consensus        27 ~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~  106 (189)
T 2v71_A           27 QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ  106 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444445555544           44455555556666666666666555566665554444445555


Q ss_pred             HHHHH
Q 005993          633 LRKKI  637 (666)
Q Consensus       633 lr~kl  637 (666)
                      |+++|
T Consensus       107 l~~~i  111 (189)
T 2v71_A          107 LHKYV  111 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=88.83  E-value=1.5  Score=52.76  Aligned_cols=19  Identities=32%  Similarity=0.352  Sum_probs=12.1

Q ss_pred             HHHHHHHhhccCCCCeEEEEcC
Q 005993          227 LRSYASILYLRLPPGFRIIIRG  248 (666)
Q Consensus       227 LRaYLSILYLr~pprmrIiLrG  248 (666)
                      ++-=++||.|   .++.+.-.|
T Consensus       326 ~~ilaaILhL---Gni~F~~~~  344 (1080)
T 2dfs_A          326 FRILAGILHL---GNVEFASRD  344 (1080)
T ss_dssp             HHHHHHHHHH---TTCCCEEET
T ss_pred             HHHHHHHHhc---cCceEEecC
Confidence            5666788888   566555443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.13  E-value=9.8  Score=33.30  Aligned_cols=89  Identities=25%  Similarity=0.419  Sum_probs=62.3

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      |..|+.|....-+|....+..+...-+++..++.++..+++++.-+..+-+.+-+-+.+-..    .-+.-+++..+|-.
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~----kLe~~ek~~~~AE~   86 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE----KLEQAEKKATDAEA   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            66788888888999999999988888888999999999999887666655544443332221    11222455566667


Q ss_pred             HHHHHHHHHhhhh
Q 005993          643 TIQDLLDKIKLLE  655 (666)
Q Consensus       643 ~i~~~~~~~~~~~  655 (666)
                      .+..|--+|..+|
T Consensus        87 evasLnRriqllE   99 (101)
T 3u59_A           87 EVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            7777777776665

>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2

Probab=88.11  E-value=0.21  Score=53.59  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=49.2

Q ss_pred             ccccccc-ccchhcccCCCCCCCcceEEEEECCCCCCHHH--------HHHHHh-cCCCCCCCc---cccccccCCcccc
Q 005993            5 VDGLFSN-SKMLQLCSNLPSLWSFHCICFADNGGGMNPDK--------MRHCMS-LGYSAKSKA---ANTIGQYGNGFKT   71 (666)
Q Consensus         5 ~~~~~~~-a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e--------l~~~ms-fG~s~k~~~---~~~IGrYGnGfKT   71 (666)
                      +|...+. |+.+.+.|+.   .|  .|.|.|||.||+.+.        +.-+|. +-...|...   .-..|..|.|+++
T Consensus        47 iDea~~g~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~  121 (391)
T 1ei1_A           47 IDEALAGHCKEIIVTIHA---DN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV  121 (391)
T ss_dssp             HHHHHTTCCCEEEEEECT---TS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHH
T ss_pred             HHHHhcCCCCEEEEEEeC---CC--EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHH
Confidence            3444444 6666777664   23  899999999999876        333442 222222211   2378999999985


Q ss_pred             cccccCCeEEEEeeecC
Q 005993           72 STMRLGADVIVFSCCCG   88 (666)
Q Consensus        72 gSMRLGkdviVfSK~~g   88 (666)
                      .. .|...+.|-++.+|
T Consensus       122 vn-alS~~l~v~~~r~g  137 (391)
T 1ei1_A          122 VN-ALSQKLELVIQREG  137 (391)
T ss_dssp             HH-HTEEEEEEEEEETT
T ss_pred             HH-HhcCeEEEEEEeCC
Confidence            53 45567788888654

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=87.88  E-value=7.1  Score=34.07  Aligned_cols=64  Identities=19%  Similarity=0.318  Sum_probs=45.8

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993          589 ERCRSLEAQLKVMQQTIEELNK---------------EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK  652 (666)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~~~~k---------------eq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~  652 (666)
                      .....++.+++++++.++++++               ....+|+-+..+...-..+-+.|+.++.+....|+.|-.+++
T Consensus        24 ~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           24 QRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455577788888888887765               224567777777777777777777777777777777777776

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.33  E-value=9.2  Score=37.03  Aligned_cols=84  Identities=21%  Similarity=0.329  Sum_probs=53.3

Q ss_pred             HHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------------HHHHHH
Q 005993          575 KRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE-----------------REEENL  633 (666)
Q Consensus       575 ~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~-----------------~e~~~l  633 (666)
                      .||.|...+++.-.    .+|+-|...+.-++..-..+.++-..|=-.+.+||.-|-                 .|-+.+
T Consensus        30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~  109 (168)
T 3o0z_A           30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666654333    444444445544555555555555555566666664443                 345677


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcC
Q 005993          634 RKKIKDASDTIQDLLDKIKLLEKMK  658 (666)
Q Consensus       634 r~kl~~~~~~i~~~~~~~~~~~~~~  658 (666)
                      +.++..+...-+.|-|+|..+||-|
T Consensus       110 k~~~~k~~~e~r~L~Ekl~~lEKe~  134 (168)
T 3o0z_A          110 KHNLEKVEGERKEAQDMLNHSEKEK  134 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888899999999999854

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=87.23  E-value=2  Score=51.88  Aligned_cols=11  Identities=36%  Similarity=0.981  Sum_probs=6.9

Q ss_pred             cccceeEEecC
Q 005993          300 DVQGFNVYHKN  310 (666)
Q Consensus       300 ~~qGf~VYhkN  310 (666)
                      ++.||-++..|
T Consensus       464 Di~GFE~f~~N  474 (1184)
T 1i84_S          464 DIAGFEIFEIN  474 (1184)
T ss_dssp             ECCCCCCCSSB
T ss_pred             ecCCcCCCCcc
Confidence            55677666655

>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*

Probab=87.19  E-value=0.4  Score=52.60  Aligned_cols=63  Identities=22%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CcceEEEEECCCCCCHHHHHHHHh-cCCCCCCCccccccccCCccccccc---ccCCe-EEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKTSTM---RLGAD-VIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~~~~~IGrYGnGfKTgSM---RLGkd-viVfSK~~g   88 (666)
                      +...|.|.|||.||+++++..++. |....+.......|..|.||-.+..   ..|-. +.|-|+..+
T Consensus        69 ~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~  136 (471)
T 1mu5_A           69 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN  136 (471)
T ss_dssp             TEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred             cEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCC
Confidence            456899999999999999998874 4444443223467889999975432   33444 999998653

>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*

Probab=87.06  E-value=0.28  Score=51.17  Aligned_cols=70  Identities=20%  Similarity=0.265  Sum_probs=44.4

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC-----ccccccccCCcccc---cccccCCeEEEEeee
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK-----AANTIGQYGNGFKT---STMRLGADVIVFSCC   86 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~-----~~~~IGrYGnGfKT---gSMRLGkdviVfSK~   86 (666)
                      +.|....-.+.-.|.|.|+|.||+++++.++....++.+..     .....+-+|.||-.   -.=.+|-++.|-|..
T Consensus       260 I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~  337 (394)
T 2btz_A          260 IKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME  337 (394)
T ss_dssp             EEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred             EEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence            33333233456689999999999999999999877665532     12345678999853   334568888888874

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.71  E-value=13  Score=32.65  Aligned_cols=89  Identities=17%  Similarity=0.314  Sum_probs=60.5

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      |..|+.|.....+|....+..+...-+++..++.++..+++++.-+..+-+.+-+-+.+-...-+.    -.+++.+|-.
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee----~ek~~~~aE~   86 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF----AEENAAKAES   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            677888888889999999999888888899999999999888876655555444444332222111    1334455666


Q ss_pred             HHHHHHHHHhhhh
Q 005993          643 TIQDLLDKIKLLE  655 (666)
Q Consensus       643 ~i~~~~~~~~~~~  655 (666)
                      .+..|--+|..+|
T Consensus        87 ev~~L~RriqllE   99 (101)
T 3u1c_A           87 EVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            6666666666654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.61  E-value=11  Score=36.09  Aligned_cols=30  Identities=20%  Similarity=0.330  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993          627 EREEENLRKKIKDASDTIQDLLDKIKLLEK  656 (666)
Q Consensus       627 ~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~  656 (666)
                      +...+.|++.|+|+-..|..|=++|..|..
T Consensus       114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~  143 (154)
T 2ocy_A          114 EILNKRLTEQLREKDTLLDTLTLQLKNLKK  143 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445577999999999888888888887653

>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*

Probab=86.27  E-value=0.34  Score=50.64  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------ccccccccCCccc---ccccccCCeEEEEeee
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQYGNGFK---TSTMRLGADVIVFSCC   86 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~------~~~~IGrYGnGfK---TgSMRLGkdviVfSK~   86 (666)
                      +.|....-.+.-.|.|.|+|.||+++++.++....++.+..      .....+-+|.||-   .-.=..|-++.|-|..
T Consensus       259 I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~  337 (394)
T 2e0a_A          259 IEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS  337 (394)
T ss_dssp             EEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred             EEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence            33333234456689999999999999999999877765532      2234577899985   3334568888888874

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=86.16  E-value=3  Score=45.03  Aligned_cols=97  Identities=16%  Similarity=0.311  Sum_probs=54.2

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EERDRREREEENLRKKIK  638 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer~~~~~e~~~lr~kl~  638 (666)
                      |+.+++.-..+++.|.++-.++.  .++-..|.++...++.++++++.++-++=....    |++..--.|...|+++|+
T Consensus         4 ~~~~r~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~   81 (421)
T 1ses_A            4 LKRLRQEPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAK   81 (421)
T ss_dssp             HHHHHHCHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            66777766777888887755431  455555555555555555555555555444443    333333344555555565


Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCCc
Q 005993          639 DASDTIQDLLDKIKLLEKMKTPSI  662 (666)
Q Consensus       639 ~~~~~i~~~~~~~~~~~~~~~~~~  662 (666)
                      +.-....++-+++..+- +..||.
T Consensus        82 ~~~~~~~~~~~~~~~~~-~~ipN~  104 (421)
T 1ses_A           82 RLEEALREKEARLEALL-LQVPLP  104 (421)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred             HHHHHHHHHHHHHHHHH-HhCCCC
Confidence            55555555555555433 556654

>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A

Probab=86.03  E-value=0.35  Score=50.76  Aligned_cols=70  Identities=17%  Similarity=0.261  Sum_probs=48.5

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------ccccccccCCcccc---cccccCCeEEEEeee
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQYGNGFKT---STMRLGADVIVFSCC   86 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~------~~~~IGrYGnGfKT---gSMRLGkdviVfSK~   86 (666)
                      +.|....-.+.-.|.|.|+|.||+++++.++....++.+..      .....+-+|.||-.   -.=..|-++.|-|..
T Consensus       272 I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~  350 (407)
T 2q8g_A          272 IQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE  350 (407)
T ss_dssp             EEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred             EEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence            33333334456789999999999999999999877665432      12345778999853   334567888888774

>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}

Probab=85.90  E-value=0.25  Score=46.23  Aligned_cols=66  Identities=17%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC   86 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~   86 (666)
                      .+.|....-.+...|.|.|||.||+++.+.++....++.+.     .+..|.||..+-   -++|-.+.|-+..
T Consensus       144 ~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----~~g~GlGL~i~~~i~~~~gG~i~~~~~~  212 (244)
T 3d36_A          144 TLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKG-----VKGTGLGMMVVYRIIESMNGTIRIESEI  212 (244)
T ss_dssp             EEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG-----GGCCSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred             eEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCC-----CCCcchhHHHHHHHHHHcCCEEEEEecC
Confidence            34444433456778999999999999999888766555431     244688886432   3467777777663

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=85.83  E-value=11  Score=32.60  Aligned_cols=74  Identities=20%  Similarity=0.392  Sum_probs=49.9

Q ss_pred             HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993          575 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK  652 (666)
Q Consensus       575 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~  652 (666)
                      |-|.++|+-++.=.|....|..++++++.+-..++.+.+.+    ...|+..++|-+.|+.-...--.-|+.||.|+.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~----~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA----QHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44555666677667777777777777777766666665543    456666677777777777666777778887763

>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*

Probab=85.68  E-value=0.2  Score=48.09  Aligned_cols=63  Identities=19%  Similarity=0.101  Sum_probs=38.9

Q ss_pred             CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993           24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC   86 (666)
Q Consensus        24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~   86 (666)
                      -.+...|.|.|||.||+++.+.++..-.++.+.......+-.|.||-.+   .=.+|-.+.|-|..
T Consensus       170 ~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~  235 (258)
T 2c2a_A          170 KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEV  235 (258)
T ss_dssp             ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence            3455679999999999999998887544443321122334578887532   33467788887764

>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2

Probab=85.64  E-value=0.42  Score=51.22  Aligned_cols=71  Identities=21%  Similarity=0.143  Sum_probs=45.9

Q ss_pred             ccchhcccCCCCCCCcceEEEEECCCCCCHHH--------HHHHH-hcCCCCCCC---ccccccccCCcccccccccCCe
Q 005993           12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDK--------MRHCM-SLGYSAKSK---AANTIGQYGNGFKTSTMRLGAD   79 (666)
Q Consensus        12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e--------l~~~m-sfG~s~k~~---~~~~IGrYGnGfKTgSMRLGkd   79 (666)
                      |+.+.+.|+.   .|  .|.|.|||.||+.+.        +..+| .+-...|..   -....|..|.|+++. -.|...
T Consensus        52 a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~v-nalS~~  125 (390)
T 1s16_A           52 AKRVDVILHA---DQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV-NALSKR  125 (390)
T ss_dssp             CSEEEEEECT---TS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHH-HHTEEE
T ss_pred             CCEEEEEEec---CC--EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHH-HHhhcc
Confidence            5556666653   23  799999999999877        45555 222222221   123689999999855 345667


Q ss_pred             EEEEeeecC
Q 005993           80 VIVFSCCCG   88 (666)
Q Consensus        80 viVfSK~~g   88 (666)
                      +.|-|+.+|
T Consensus       126 l~v~~~r~g  134 (390)
T 1s16_A          126 VEVNVRRDG  134 (390)
T ss_dssp             EEEEEEETT
T ss_pred             cEEEEEECC
Confidence            888888654

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=85.42  E-value=15  Score=34.24  Aligned_cols=18  Identities=22%  Similarity=0.398  Sum_probs=7.2

Q ss_pred             hhhhhhHHHHHHHHhHHh
Q 005993          566 LKQENHELKKRLEKKEGE  583 (666)
Q Consensus       566 ~~~e~~~~~~~~~~~~~~  583 (666)
                      |+.+...+..++..++..
T Consensus        11 l~~~~~~~~~~~~~l~~~   28 (284)
T 1c1g_A           11 LKLDKENALDRADEAEAD   28 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHH
Confidence            334444444444443333

>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}

Probab=85.12  E-value=0.17  Score=45.97  Aligned_cols=71  Identities=15%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC   86 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~   86 (666)
                      .+.+....-.+.-.|.|.|||.||+++.+.++..-.++.........+..|.||..+-   -.+|..+.|-+..
T Consensus        66 ~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~  139 (177)
T 3sl2_A           66 TFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIE  139 (177)
T ss_dssp             EEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEET
T ss_pred             EEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecC
Confidence            3444323445667899999999999999888876555433222334557788987443   3456667666654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.96  E-value=11  Score=33.64  Aligned_cols=49  Identities=16%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993          562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK  610 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k  610 (666)
                      -|.+|+.++......+.++.+.|..|+.++...|.+...+++.||+|.-
T Consensus        13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa   61 (97)
T 2eqb_B           13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   61 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666666666777777788888888888877777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.75  E-value=3  Score=44.66  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=16.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          621 EERDRREREEENLRKKIKDASDTIQDLLDK  650 (666)
Q Consensus       621 eer~~~~~e~~~lr~kl~~~~~~i~~~~~~  650 (666)
                      ||.+|-..|-+++-+++.+|-.|.||+..+
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (487)
T 3oja_A          449 EENARLKKLNGEADLALASANATLQELVVR  478 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence            444444555555555555666666666544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.67  E-value=4.7  Score=43.21  Aligned_cols=56  Identities=13%  Similarity=0.148  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993          599 KVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL  654 (666)
Q Consensus       599 ~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~  654 (666)
                      +++++++|.....++.+.+++++|-+.-.+|.+.|++.+.+.-..|.+-.+++..+
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (487)
T 3oja_A          420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL  475 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence            34444444444445566677777777777778888888888888887777776654

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}

Probab=84.51  E-value=0.5  Score=52.67  Aligned_cols=63  Identities=22%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             CcceEEEEECCCCCCHHHHHHHHh-cCCCCCCCccccccccCCcccccc---cccCCe-EEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKTST---MRLGAD-VIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~~~~~IGrYGnGfKTgS---MRLGkd-viVfSK~~g   88 (666)
                      +...|.|.|||.||+++++..++. |....+.......|..|.||-.+.   -..|-+ +.|-|+..+
T Consensus        68 ~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~  135 (530)
T 2zbk_B           68 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN  135 (530)
T ss_dssp             TEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred             ceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCC
Confidence            455899999999999999998884 434444322346789999997543   233444 889888643

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=84.31  E-value=11  Score=34.30  Aligned_cols=37  Identities=16%  Similarity=0.295  Sum_probs=25.9

Q ss_pred             hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH
Q 005993          569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI  605 (666)
Q Consensus       569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~  605 (666)
                      |...|+.+|.-.|+.|......|..|.+.+...+..+
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l   61 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM   61 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888888888776677777776665554433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=83.59  E-value=3.1  Score=39.71  Aligned_cols=59  Identities=19%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             hhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993          562 NLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA  620 (666)
Q Consensus       562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~  620 (666)
                      .|..|+.|...|+.|+..+++++...-       |-.-+|..|+..++.++..+.+|...||+-+=
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM  134 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL  134 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588899999999999999988864322       66778888888899999999999999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.56  E-value=8  Score=42.13  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             chhhhhhhhhhhHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 005993          560 GANLGQLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNKEQESLIDI--------------  618 (666)
Q Consensus       560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~-------~~~l~~~~~~~~~~~~~~~keq~~li~~--------------  618 (666)
                      ++.+.+|++|.....+-+..+++++...++.       .....+++++..+++++..++-+.....              
T Consensus       462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (597)
T 3oja_B          462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED  541 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence            4556677766666666666665555433311       1111233333333333322222222222              


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005993          619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM  657 (666)
Q Consensus       619 f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~  657 (666)
                      +-+|+++-++..+.-++++++....++++..+++.++.-
T Consensus       542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            224444444444555555555555555666666666543

>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*

Probab=83.36  E-value=0.41  Score=50.61  Aligned_cols=63  Identities=21%  Similarity=0.285  Sum_probs=41.8

Q ss_pred             CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------ccccccccCCcccc---cccccCCeEEEEeee
Q 005993           24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQYGNGFKT---STMRLGADVIVFSCC   86 (666)
Q Consensus        24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~------~~~~IGrYGnGfKT---gSMRLGkdviVfSK~   86 (666)
                      -.+.-.|.|.|+|.||+++++.++....++.+..      .....+-+|.||-.   -.=..|-++.|-|..
T Consensus       290 ~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~  361 (419)
T 1y8o_A          290 GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME  361 (419)
T ss_dssp             CSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence            3456689999999999999999999776665432      12345678999853   333467788888774

>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A

Probab=83.11  E-value=0.18  Score=43.95  Aligned_cols=64  Identities=9%  Similarity=0.098  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc----cccCCeEEEEee
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST----MRLGADVIVFSC   85 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS----MRLGkdviVfSK   85 (666)
                      .+.|....-.+.-.|.|.|||.||+++++.++..-.++.+      -+..|.||..+-    ..+|..+.+-+.
T Consensus        68 ~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~------~~g~GlGL~i~~~~~~~~~gg~~~~~~~  135 (152)
T 3a0y_A           68 KIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTENR  135 (152)
T ss_dssp             EEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred             EEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC------CCCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence            3444443345667899999999999999988875554433      235789987553    256777776655

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.74  E-value=11  Score=34.36  Aligned_cols=80  Identities=24%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      +...|.|..+|+..+..++.+++.-+..+.+|+.++.++++..+..-+.-...|.-+       +.|-..+|.-+..-..
T Consensus        33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~l-------E~eL~~~r~em~~ql~  105 (131)
T 3tnu_A           33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSV-------EEQLAQLRCEMEQQNQ  105 (131)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            777889999999999999999999889999999999999987765433323333332       2333334444444444


Q ss_pred             HHHHHHH
Q 005993          643 TIQDLLD  649 (666)
Q Consensus       643 ~i~~~~~  649 (666)
                      .-|+||+
T Consensus       106 EYq~Ll~  112 (131)
T 3tnu_A          106 EYKILLD  112 (131)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4555554

>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A

Probab=82.73  E-value=0.46  Score=41.57  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC   86 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~   86 (666)
                      ++|....-.+.-.|.|.|||.||+++.+.++..-+++.+..    -+..|.||..+.   -.+|-++.+-+..
T Consensus        64 i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i~~~~~~~~gG~i~~~~~~  132 (152)
T 1id0_A           64 VEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGESM  132 (152)
T ss_dssp             EEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEECT
T ss_pred             EEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHHHHHHHHHcCCEEEEEeCC
Confidence            33433233456789999999999999998887655544321    245788875332   3457777776654

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.22  E-value=14  Score=33.60  Aligned_cols=80  Identities=16%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD  642 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~  642 (666)
                      +..-|.|..+|+..+..++.+++.=+..+.+|+.++.++++..+..-+.-...|.-+-+       |-..+|.-+..-..
T Consensus        31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~-------eL~~~r~e~~~ql~  103 (129)
T 3tnu_B           31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE-------ALQKAKQDMARLLR  103 (129)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH
Confidence            66778999999999999999999988999999999999998776543333333333322       22333333333344


Q ss_pred             HHHHHHH
Q 005993          643 TIQDLLD  649 (666)
Q Consensus       643 ~i~~~~~  649 (666)
                      .-|+||+
T Consensus       104 EYq~Lln  110 (129)
T 3tnu_B          104 EYQELMN  110 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4455554

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=81.64  E-value=22  Score=33.15  Aligned_cols=44  Identities=32%  Similarity=0.465  Sum_probs=26.6

Q ss_pred             hhhhhhhHHHHHHHHhHHhH----------H---HHH-HhhhcHHHHHHHHHHHHHHH
Q 005993          565 QLKQENHELKKRLEKKEGEL----------Q---EER-ERCRSLEAQLKVMQQTIEEL  608 (666)
Q Consensus       565 ~~~~e~~~~~~~~~~~~~~~----------~---~e~-~~~~~l~~~~~~~~~~~~~~  608 (666)
                      .|+.||..|++.+......+          +   +++ ++++.|..++.+++.+...+
T Consensus        26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l   83 (155)
T 2oto_A           26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLA   83 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888877776554322          2   122 55667777777776666333

>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*

Probab=80.87  E-value=0.29  Score=44.91  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHH------------------------HHHHhcCCCCCCCccccccccCCcccc
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKM------------------------RHCMSLGYSAKSKAANTIGQYGNGFKT   71 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el------------------------~~~msfG~s~k~~~~~~IGrYGnGfKT   71 (666)
                      .++|....-.+.-.|.|.|||.||+++++                        .+++.-+++.+. .....+..|.||..
T Consensus        80 ~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~-~~~~~~g~GlGL~i  158 (189)
T 1i58_A           80 TLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKE-KVSEVSGRGVGMDV  158 (189)
T ss_dssp             EEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHH-HHHGGGTCCCHHHH
T ss_pred             eEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccc-cCCCCCCCccCHHH
Confidence            44444433346678999999999999987                        334443444331 11233567899864


Q ss_pred             c---ccccCCeEEEEeee
Q 005993           72 S---TMRLGADVIVFSCC   86 (666)
Q Consensus        72 g---SMRLGkdviVfSK~   86 (666)
                      +   .-.+|..+.|-+..
T Consensus       159 v~~~~~~~~G~i~i~s~~  176 (189)
T 1i58_A          159 VKNVVESLNGSISIESEK  176 (189)
T ss_dssp             HHHHHHHTTCEEEEEEET
T ss_pred             HHHHHHHcCCEEEEEeCC
Confidence            4   33457777777763

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=80.08  E-value=9.5  Score=41.68  Aligned_cols=98  Identities=16%  Similarity=0.241  Sum_probs=56.5

Q ss_pred             hhhhhhhhhHHHHHHHHhHH-h---HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEG-E---LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR  634 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~-~---~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr  634 (666)
                      |+.+++.-..+++.|.++-. +   +-.++    ++.|.|..++++++.+.+++.|+--.+... .|++..--.|...|+
T Consensus         4 ~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-~~~~~~l~~~~~~~~   82 (455)
T 2dq0_A            4 IKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK-GEPVDELLAKSREIV   82 (455)
T ss_dssp             HHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCTHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHH
Confidence            66677666677777877643 2   12222    556666666666666666655553322110 133444445666677


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993          635 KKIKDASDTIQDLLDKIKLLEKMKTPSI  662 (666)
Q Consensus       635 ~kl~~~~~~i~~~~~~~~~~~~~~~~~~  662 (666)
                      ++|++.-....++-+++..+- +..||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-~~ipN~  109 (455)
T 2dq0_A           83 KRIGELENEVEELKKKIDYYL-WRLPNI  109 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            777777777777767666544 566664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	666
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	3e-04
d1t7sa_	129	a.7.7.1 (A:) BAG-family molecular chaperon regulat	0.002

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 565 QLKQENHELKKRLEKKEGELQE--ERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622
           + +Q   + ++  ++   +L E  E +R + L+ Q + +   ++E   +++ L + F +E
Sbjct: 229 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE---QEQLLKEGFQKE 285

Query: 623 RDRREREEENLRKKI 637
               + E ++L+ K+
Sbjct: 286 SRIMKNEIQDLQTKM 300

>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 129

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperon regulator-1, BAG1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617
              +NL +    N      LE+   E  ++ E  + LE ++K      EE  +  E+L  
Sbjct: 27  HNLSNLQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEKKVKY---FNEEAERHLETLDG 83

Query: 618 IFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657
           +        E + +  R+K K   + IQ LL++   L + 
Sbjct: 84  MNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRR 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	666
d2iwxa1	213	HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T	98.21
d1uyla_	208	HSP90 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2gqpa1	227	HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	98.15
d2hkja3	219	Topoisomerase VI-B subunit {Archaeon Sulfolobus sh	97.12
d1h7sa2	203	DNA mismatch repair protein PMS2 {Human (Homo sapi	97.11
d1b63a2	218	DNA mismatch repair protein MutL {Escherichia coli	96.16
d1ixma_	179	Sporulation response regulatory protein Spo0B {Bac	90.9
d2c2aa2	161	Sensor histidine kinase TM0853 {Thermotoga maritim	88.85
d1gkza2	193	Branched-chain alpha-ketoacid dehydrogenase kinase	87.08
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	86.39
d1jm6a2	190	Pyruvate dehydrogenase kinase {Rat (Rattus norvegi	86.32
d1bxda_	161	Histidine kinase domain of the osmosensor EnvZ {Es	84.11
d1ysra1	148	Sensor-type histidine kinase PrrB {Mycobacterium t	83.62
d1id0a_	146	Histidine kinase PhoQ domain {Escherichia coli [Ta	82.96

>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=3.4e-07  Score=88.76  Aligned_cols=62  Identities=23%  Similarity=0.347  Sum_probs=52.0

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCCC---------ccccccccCCcccccccccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKSK---------AANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~---------~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+.+++.+-| .+|.|.+..         ..+.|||||.||=|+ |-+|..|.|.||+.+
T Consensus        70 ~~~~l~i~DnGiGMt~~~~~~~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~-Fmvad~v~V~trs~~  141 (213)
T d2iwxa1          70 EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND  141 (213)
T ss_dssp             GGTEEEEEECSSCCCHHHHHHHHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred             ccceeEEecCCccccHHHHHHHHhhhhcccchHHHhhhhhhhhhhhhcccccchhhh-hhhccceeEEeecCC
Confidence            56789999999999999999888 788876531         235799999999766 569999999999764

>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.4e-07  Score=89.39  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=50.6

Q ss_pred             CCcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           25 WSFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        25 ~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      .+...|.|.|||.||+.+++.+-| ++|.|.+.         ...+.|||||.||.|+.| .+..|.|.||..+
T Consensus        68 ~~~~~l~I~DnGiGMt~~el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~  140 (208)
T d1uyla_          68 KQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND  140 (208)
T ss_dssp             TTTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred             CCccEEEEEcCCccccHHHHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCC
Confidence            366789999999999999998887 57766532         123679999999998865 7888999999654

>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=98.15  E-value=1e-06  Score=86.04  Aligned_cols=64  Identities=25%  Similarity=0.371  Sum_probs=47.0

Q ss_pred             CCCcceEEEEECCCCCCHHHHHHHH-hcCCCCCC--------------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993           24 LWSFHCICFADNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG   88 (666)
Q Consensus        24 ~~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~--------------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g   88 (666)
                      -.+...|.|.|||.||+.+++.+-+ ..|.|...              .....|||||.||=|+.| ++..|.|.||..+
T Consensus        66 d~~~~~l~i~DnGiGMt~~e~~~~lgtIa~Sgt~~f~~~~~~~~~~~~~~~~~IGqFGvGfyS~Fm-Vad~V~v~s~~~~  144 (227)
T d2gqpa1          66 DKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNN  144 (227)
T ss_dssp             ETTTTEEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTT
T ss_pred             CCCCcEEEEEecCccccHHHHHHHHHHHhhcchHHHHHhhhhcccccccchhhhhhcCcceeEEEe-eeeeEEEEEeccC
Confidence            3467799999999999999999988 56665432              012359999999998876 6788999888654

>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: Topoisomerase VI-B subunit
species: Archaeon Sulfolobus shibatae [TaxId: 2286]

Probab=97.12  E-value=0.0002  Score=67.98  Aligned_cols=63  Identities=24%  Similarity=0.358  Sum_probs=50.2

Q ss_pred             CcceEEEEECCCCCCHHHHHHHH-hcCCCCCCCccccccccCCcccccc----cccCCeEEEEeeecC
Q 005993           26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKSKAANTIGQYGNGFKTST----MRLGADVIVFSCCCG   88 (666)
Q Consensus        26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~~~~IGrYGnGfKTgS----MRLGkdviVfSK~~g   88 (666)
                      +...|.|.|||.||+++++..+. .|..+.+.......|.+|.||..+.    +..|..+.|.|+..+
T Consensus        59 ~~~~i~V~DnG~Gi~~~~~~~~f~~~~~s~~~~~~~~~G~~GlGl~~~~~~s~~~~g~~i~V~S~~~~  126 (219)
T d2hkja3          59 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN  126 (219)
T ss_dssp             TEEEEEEEECSCCCCGGGHHHHHHCCCSSCCCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred             CEEEEEEEcCCCCCCHHHHHhhccceEeccccccccccCccCHHHHHHHHHHHHcCCcEEEEEEEecC
Confidence            34479999999999999999988 5777666444456899999999754    556778999999764

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=9.6e-05  Score=69.90  Aligned_cols=73  Identities=19%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             cchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCc-c--ccc---cccCCcccccccccCCeEEEEeee
Q 005993           13 KMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKA-A--NTI---GQYGNGFKTSTMRLGADVIVFSCC   86 (666)
Q Consensus        13 ~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~-~--~~I---GrYGnGfKTgSMRLGkdviVfSK~   86 (666)
                      .|..+.|.+.+ .|...|.|.|||.||+++++..+..-++..|... .  ..+   |-=|.+  -+++.....+.|.|++
T Consensus        22 ~At~I~i~i~~-~g~~~i~V~DnG~Gi~~~dl~~~~~~~~tsk~~~~~~~~~~~t~GfrGea--L~si~~~s~~~i~s~~   98 (203)
T d1h7sa2          22 GATNIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEA--LSSLCALSDVTISTCH   98 (203)
T ss_dssp             TCSEEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSH--HHHHHHHSEEEEEEEC
T ss_pred             CCCEEEEEEEc-CCEEEEEEeeCCcccCHHHhhhhhhheeecccccccccccccccCccchh--hhhhhhccceEEEeec
Confidence            44444444422 3566899999999999999977664444444322 1  223   333333  3455666789999998


Q ss_pred             cC
Q 005993           87 CG   88 (666)
Q Consensus        87 ~g   88 (666)
                      .+
T Consensus        99 ~~  100 (203)
T d1h7sa2          99 AS  100 (203)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Sporulation response regulatory protein Spo0B
superfamily: Sporulation response regulatory protein Spo0B
family: Sporulation response regulatory protein Spo0B
domain: Sporulation response regulatory protein Spo0B
species: Bacillus subtilis [TaxId: 1423]

Probab=90.90  E-value=0.017  Score=49.05  Aligned_cols=40  Identities=10%  Similarity=0.048  Sum_probs=24.7

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCC
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAK   55 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k   55 (666)
                      .+.|....-.+.-.|.|.|||.||+|+.+.+++.-||...
T Consensus       122 ~I~i~~~~~~~~~~i~v~D~G~gi~~e~l~~if~~~y~~~  161 (179)
T d1ixma_         122 TVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYEDV  161 (179)
T ss_dssp             EEEEECCCSSSSCEEEEEEESCBSCGGGCC----------
T ss_pred             hhhhhhcccccEEEEEEEeCCCCcCHHHHHHHHHhccccc
Confidence            3455555566778999999999999999999999888654

>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=88.85  E-value=0.048  Score=48.54  Aligned_cols=70  Identities=20%  Similarity=0.089  Sum_probs=42.3

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcc---cccccccCCeEEEEeee
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF---KTSTMRLGADVIVFSCC   86 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGf---KTgSMRLGkdviVfSK~   86 (666)
                      +.+....-.+.-.|.|.|||.||+++++.++..--+..+.......+-.|.||   |.---..|-++.|-|..
T Consensus        74 i~i~~~~~~~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i~v~s~~  146 (161)
T d2c2aa2          74 VKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEV  146 (161)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEET
T ss_pred             eeEEEEecCCEEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHHHHHHCCCEEEEEecC
Confidence            33333334466789999999999999998888533322211123344568887   34455677888887774

>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Branched-chain alpha-ketoacid dehydrogenase kinase (BCK)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.08  E-value=0.053  Score=49.02  Aligned_cols=40  Identities=15%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 005993           17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKS   56 (666)
Q Consensus        17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~   56 (666)
                      +.|....-.+.-.|.|.|||.||+++.+.++....++.+.
T Consensus        83 I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~  122 (193)
T d1gkza2          83 VVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAE  122 (193)
T ss_dssp             EEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-
T ss_pred             EEEEEEccCCEEEEEEecCCCCCCHHHHHHhcCCceeccc
Confidence            3333334456778999999999999999999988887764

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=86.39  E-value=2.9  Score=34.63  Aligned_cols=96  Identities=18%  Similarity=0.278  Sum_probs=51.0

Q ss_pred             hhhhhhhhhHHHHHHHHhHHhHH-HH----HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005993          563 LGQLKQENHELKKRLEKKEGELQ-EE----RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI  637 (666)
Q Consensus       563 ~~~~~~e~~~~~~~~~~~~~~~~-~e----~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl  637 (666)
                      |+.+++.-...++.|.++--++. .+    -+++|.|..++++++.+..++.|+=-.   .=.++++.--+|-..|+.++
T Consensus         4 ik~ir~n~e~v~~~l~~R~~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k---~~~~~~~~l~~~~k~lk~~i   80 (110)
T d1seta1           4 LKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEA   80 (110)
T ss_dssp             HHHHHHCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG---CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHH
Confidence            56666555666777777755542 11    144455555555555554444433211   11234444445555666666


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993          638 KDASDTIQDLLDKIKLLEKMKTPSI  662 (666)
Q Consensus       638 ~~~~~~i~~~~~~~~~~~~~~~~~~  662 (666)
                      ++.....+++-+++..+- +..||.
T Consensus        81 ~~le~~~~~~~~~l~~~l-l~iPNi  104 (110)
T d1seta1          81 KRLEEALREKEARLEALL-LQVPLP  104 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHH-HcCCCC
Confidence            666666666666666554 556664

>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]

Probab=86.32  E-value=0.099  Score=47.82  Aligned_cols=64  Identities=23%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCcc-----ccccccCCccccc---ccccCCeEEEEeee
Q 005993           23 SLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAA-----NTIGQYGNGFKTS---TMRLGADVIVFSCC   86 (666)
Q Consensus        23 ~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~-----~~IGrYGnGfKTg---SMRLGkdviVfSK~   86 (666)
                      .-.+...|.|.|+|.||+++++.++....++.+....     ...+-.|.||=.+   -=..|-++.|.|..
T Consensus        95 ~~~~~~~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~k~ive~hgG~I~v~s~~  166 (190)
T d1jm6a2          95 LGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME  166 (190)
T ss_dssp             ECSSEEEEEEEECSCCCCGGGTTGGGCTTCCCSCCC---------CCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred             eCCeEEEEEEeccCCCCCHHHHHHHhCcceecCCcCcCcccccccCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence            3446779999999999999999999987766543221     2345667777422   22457777777764

>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Histidine kinase domain of the osmosensor EnvZ
species: Escherichia coli [TaxId: 562]

Probab=84.11  E-value=0.16  Score=45.28  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=39.7

Q ss_pred             CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993           25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC   86 (666)
Q Consensus        25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~   86 (666)
                      .+.-.|.|.|||.||+++++.++..--++..  .....+-.|+||=   ...-+.|-++.|-+..
T Consensus        75 ~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~--~~~~~~g~GLGL~ivk~iv~~hgG~i~v~s~~  137 (161)
T d1bxda_          75 PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGD--SARTISGTGLGLAIVQRIVDNHNGMLELGTSE  137 (161)
T ss_dssp             TTEEEEEEEEESSCSCTTGGGCSSCCCCCCS--CCCCCCCCSCCCCTTHHHHHHHTSEEEEEEET
T ss_pred             CCEEEEEEEEcCCCCCHHHHHHHhCCceECC--CCCcCCCCCchHHHHHHHHHHCCCEEEEEEcC
Confidence            4556899999999999999888874323222  1223566789984   3334556677776664

>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor-type histidine kinase PrrB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.62  E-value=0.21  Score=43.76  Aligned_cols=68  Identities=13%  Similarity=0.047  Sum_probs=40.0

Q ss_pred             hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993           16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC   86 (666)
Q Consensus        16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~   86 (666)
                      .++|....-.+.-.|.|.|||.||+++++.++..--++...   ..-+-.|.||-   ...-..|-++.|-|..
T Consensus        64 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ife~f~r~~~---~~~~G~GLGL~i~~~iv~~hgG~i~~~s~~  134 (148)
T d1ysra1          64 LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST---ASHSGSGLGLALVAQQAQLHGGTASLENSP  134 (148)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEECT
T ss_pred             EEEEEEEecCCEEEEEEEEcCCCCCHHHHHHhcCccccCCC---CCCCCccHHHHHHHHHHHHcCCEEEEEEcC
Confidence            34444444456668999999999999999988843232111   11234588874   4445667777776664

>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Histidine kinase PhoQ domain
species: Escherichia coli [TaxId: 562]

Probab=82.96  E-value=0.2  Score=43.94  Aligned_cols=59  Identities=15%  Similarity=0.136  Sum_probs=38.3

Q ss_pred             CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993           24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC   86 (666)
Q Consensus        24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~   86 (666)
                      -.+.-.|.|.|||.||+++++.++..-.+.....    -+-.|+||=   ...=+.|-.+.|-+..
T Consensus        71 ~~~~~~i~V~D~G~Gi~~~~~~~iF~~F~r~~~~----~~G~GLGL~I~k~iv~~h~G~i~~~s~~  132 (146)
T d1id0a_          71 TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGESM  132 (146)
T ss_dssp             CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEECT
T ss_pred             eCCEEEEEEEeeCCCCCHHHHHHHcCCcccCCCC----CCCeeHHHHHHHHHHHHcCCEEEEEEcC
Confidence            3455689999999999999999888644432211    123677773   3333456666665553