Citrus Sinensis ID: 006034
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 663 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M0Z3 | 776 | K(+) efflux antiporter 3, | yes | no | 0.926 | 0.791 | 0.782 | 0.0 | |
| O65272 | 1174 | K(+) efflux antiporter 2, | no | no | 0.754 | 0.425 | 0.385 | 2e-80 | |
| Q9ZTZ7 | 1193 | K(+) efflux antiporter 1, | no | no | 0.754 | 0.419 | 0.376 | 5e-80 | |
| A8AQP0 | 601 | Glutathione-regulated pot | yes | no | 0.755 | 0.833 | 0.340 | 6e-70 | |
| B4TKN2 | 601 | Glutathione-regulated pot | yes | no | 0.755 | 0.833 | 0.344 | 2e-68 | |
| A9MN27 | 601 | Glutathione-regulated pot | N/A | no | 0.755 | 0.833 | 0.342 | 2e-68 | |
| B5FJN1 | 601 | Glutathione-regulated pot | yes | no | 0.755 | 0.833 | 0.342 | 3e-68 | |
| B5R2A8 | 601 | Glutathione-regulated pot | yes | no | 0.755 | 0.833 | 0.342 | 3e-68 | |
| Q8Z1Y7 | 601 | Glutathione-regulated pot | N/A | no | 0.755 | 0.833 | 0.344 | 4e-68 | |
| C0Q0D3 | 601 | Glutathione-regulated pot | yes | no | 0.755 | 0.833 | 0.342 | 4e-68 |
| >sp|Q9M0Z3|KEA3_ARATH K(+) efflux antiporter 3, chloroplastic OS=Arabidopsis thaliana GN=KEA3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/624 (78%), Positives = 545/624 (87%), Gaps = 10/624 (1%)
Query: 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63
RIL S ILGFFFAG+VLNQ G+IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF
Sbjct: 123 RILKASPILGFFFAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 182
Query: 64 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 123
AFGMGLTQV+L T AFTAFELPPNGA+GT+ILEFLFHSR DLVNIRSIDEAVVIGAALSL
Sbjct: 183 AFGMGLTQVLLCTAAFTAFELPPNGAIGTKILEFLFHSRPDLVNIRSIDEAVVIGAALSL 242
Query: 124 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPMLV 181
SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ ES+WPML
Sbjct: 243 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQDIGGESIWPMLA 302
Query: 182 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDT 241
KES KAL GLG+LSLGGK+ LRR+FEVVAE RSSEAFVALCLLTVAGTSL+TQ LGFSDT
Sbjct: 303 KESAKALGGLGILSLGGKFFLRRIFEVVAETRSSEAFVALCLLTVAGTSLVTQWLGFSDT 362
Query: 242 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301
LGAFLAGA+LAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID+E+LFREWPNVL+LL G
Sbjct: 363 LGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMEVLFREWPNVLSLLGG 422
Query: 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 361
LI+IKTLII+AIGPRVGLT+QESVR+G LLSQGGEFAFVVFSLANRLGVLP ELNKLLII
Sbjct: 423 LIVIKTLIITAIGPRVGLTIQESVRVGFLLSQGGEFAFVVFSLANRLGVLPNELNKLLII 482
Query: 362 VVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANL 421
VVVLSMALTP LN++GR AADF+D++ +K+ E VN++ SE +VI+GFGQMGQVLAN
Sbjct: 483 VVVLSMALTPYLNQLGRKAADFLDERLDPGEKIGEDVNFDVSESIVIIGFGQMGQVLANF 542
Query: 422 LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481
LS PL S SD VGWP++ FDLNP+VVKESRKLGFPILYGD SRP+VL SAG++SPKA+
Sbjct: 543 LSTPLVSDSD--LVGWPYIGFDLNPAVVKESRKLGFPILYGDGSRPSVLQSAGVSSPKAI 600
Query: 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541
MIMY KKRT EAVQRLRLAFP PIYARAQD+ HLL+LKKAGATDAILENAETSLQLGS
Sbjct: 601 MIMYKGKKRTTEAVQRLRLAFPGSPIYARAQDLPHLLELKKAGATDAILENAETSLQLGS 660
Query: 542 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADI----VEA 597
KLL GFGVMSDDV+FL ++ R+SMEIQAQE ++ + +KP+Q++ +DI
Sbjct: 661 KLLTGFGVMSDDVSFLSKVFRDSMEIQAQEEITASETNAG--LKPMQMKASDINVVSAAT 718
Query: 598 EKTIPSTSNDDKLSREDNTDTAGE 621
+K + + + N+D+A E
Sbjct: 719 QKQVQLMKPMQMKASDSNSDSAAE 742
|
May operate as a K(+)/H(+) antiporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65272|KEA2_ARATH K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana GN=KEA2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 212/550 (38%), Positives = 314/550 (57%), Gaps = 50/550 (9%)
Query: 1 MIMRILCRSQILGFFFAGIVLNQLG--IIRNLTDVKVLSEWGILFLLFEMGLELSLARLK 58
+ +I S +LG+ AGI++ G IIRN+ K ++E+G++FLLF +GLELS+ RL
Sbjct: 585 LFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKAIAEFGVVFLLFNIGLELSVERLS 644
Query: 59 ALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIG 118
++ K+ FG+G QV+++ ++ + H V ++ A+VIG
Sbjct: 645 SMKKYVFGLGSAQVLVTAA----------------VIGLITH----YVAGQAGPAAIVIG 684
Query: 119 AALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVS----- 173
L+LSS+A VLQ+L E+GE +R G AT +LL QD+AVV LL+++P++ S
Sbjct: 685 NGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIG 744
Query: 174 -ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLL 232
+++ L ++KA + + GG+ LLR +++ +AE R++E F A LL + GTSLL
Sbjct: 745 FQAIAEALGLAAIKAAVAITGIIAGGRLLLRPIYKQIAENRNAEIFSANTLLVILGTSLL 804
Query: 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREW 292
T + G S LGAFLAG +LAET F Q+E+DI P+RGLLLGLFF+T G SID +LL +
Sbjct: 805 TARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLANF 864
Query: 293 PNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLP 352
P ++ L L++ KT+++ IG G+++ +VR+GLLL+ GGEFAFV F A G++
Sbjct: 865 PLIMGTLGLLLVGKTILVVIIGKLFGISIISAVRVGLLLAPGGEFAFVAFGEAVNQGIMT 924
Query: 353 LELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSED-----KVE-EMVNYEGSEPV 406
+L+ LL +VV +SMALTP L G+ I +F +D VE E + +G +
Sbjct: 925 PQLSSLLFLVVGISMALTPWLAAGGQ----LIASRFELQDVRSLLPVESETDDLQGH--I 978
Query: 407 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR 466
+I GFG++GQ++A LLS L PFVA D++ V R L P+ +GDA
Sbjct: 979 IICGFGRIGQIIAQLLSERL----------IPFVALDVSSDRVAIGRSLDLPVYFGDAGS 1028
Query: 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGAT 526
VL G A I V L FP + + RA D+ H L+L+KAGAT
Sbjct: 1029 REVLHKIGADRACAAAIALDTPGANYRCVWALSKYFPNVKTFVRAHDVDHGLNLEKAGAT 1088
Query: 527 DAILENAETS 536
+ E E S
Sbjct: 1089 AVVPETLEPS 1098
|
May operate as a K(+)/H(+) antiporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZTZ7|KEA1_ARATH K(+) efflux antiporter 1, chloroplastic OS=Arabidopsis thaliana GN=KEA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 207/550 (37%), Positives = 315/550 (57%), Gaps = 50/550 (9%)
Query: 1 MIMRILCRSQILGFFFAGIVLNQLG--IIRNLTDVKVLSEWGILFLLFEMGLELSLARLK 58
+ +I S +LG+ AGI++ G IIRN+ + ++E+G++FLLF +GLELS+ RL
Sbjct: 605 LFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTRAIAEFGVVFLLFNIGLELSVERLS 664
Query: 59 ALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIG 118
++ K+ FG+G QV+++ ++ L H V ++ A+VIG
Sbjct: 665 SMKKYVFGLGSAQVLVTAA----------------VVGLLAH----YVAGQAGPAAIVIG 704
Query: 119 AALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVS----- 173
L+LSS+A VLQ+L E+GE +R G A+ +LL QD+AVV LL+++P++ S
Sbjct: 705 NGLALSSTAVVLQVLQERGESTSRHGRASFSVLLFQDLAVVVLLILIPLISPNSSKGGIG 764
Query: 174 -ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLL 232
+++ L ++KA + + GG+ LLR +++ +AE R++E F A LL + GTSLL
Sbjct: 765 FQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQIAENRNAEIFSANTLLVILGTSLL 824
Query: 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREW 292
T + G S LGAFLAG +LAET F Q+E+DI P+RGLLLGLFF+T G SID +LL +
Sbjct: 825 TARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNF 884
Query: 293 PNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLP 352
P ++ L LI+ KT+++ +G G+++ ++R+GLLL+ GGEFAFV F A G++
Sbjct: 885 PVIVGTLGLLIVGKTMLVVIMGKLFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMS 944
Query: 353 LELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSED-----KVE-EMVNYEGSEPV 406
+L+ LL +VV +SMA+TP L G+ I +F D VE E + +G +
Sbjct: 945 PQLSSLLFLVVGISMAITPWLAAGGQ----LIASRFELHDVRSLLPVESETDDLQGH--I 998
Query: 407 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR 466
+I GFG++GQ++A LLS L PFVA D++ V R L P+ +GDA
Sbjct: 999 IICGFGRVGQIIAQLLSERL----------IPFVALDVSSDRVTIGRSLDLPVYFGDAGS 1048
Query: 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGAT 526
VL G A ++ V L +P + + RA D++H L+L+KAGAT
Sbjct: 1049 KEVLHKIGAGRACAAVVALDAPGANYRCVWALSKFYPNVKTFVRAHDVVHGLNLEKAGAT 1108
Query: 527 DAILENAETS 536
+ E E S
Sbjct: 1109 AVVPETLEPS 1118
|
May operate as a K(+)/H(+) antiporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|A8AQP0|KEFB_CITK8 Glutathione-regulated potassium-efflux system protein KefB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 185/543 (34%), Positives = 299/543 (55%), Gaps = 42/543 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ ++L L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS + + + +F S AV+ G L++SS+A
Sbjct: 92 AAQVMLSAVVLAGLLM---------LTDF------------SWQAAVIGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L E W +K +K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW---IKVGMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA G+L +GG+YLLR VF +A++ E F A LL V G++L LG S LG F+A
Sbjct: 188 LAFAGML-IGGRYLLRPVFRFIADSGVREVFTAATLLLVLGSALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G S+++ +L+ V + L+ +KT
Sbjct: 247 GVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVAVSVIVLVAVKT 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L++ + G+ E ++ +LSQGGEFAFV+FS A+ + + LL++ V LSM
Sbjct: 307 LVLYLLARLYGIRSSERMQFAGVLSQGGEFAFVLFSTASSQRLFQGDQMSLLLVTVTLSM 366
Query: 368 ALTPLLNE-IGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPL 426
TPLL + + +W + ++ G E++ E+ + V++VGFG+ GQV+ LL A
Sbjct: 367 MTTPLLMKLVDKWLSRQLN---GPEEEDEKPWVDDDKPQVIVVGFGRFGQVIGRLLMA-- 421
Query: 427 ASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486
N + + + S V RK G+ + YGDA++ +L SAG + ++++I
Sbjct: 422 ------NKM--RITVLERDISAVNLMRKYGYKVYYGDATQVELLRSAGAEAAESIVITCN 473
Query: 487 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKG 546
+ + T++ V+ R FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 474 EPEDTMKLVEICRQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533
Query: 547 FGV 549
G+
Sbjct: 534 LGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338) |
| >sp|B4TKN2|KEFB_SALHS Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella heidelberg (strain SL476) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 187/543 (34%), Positives = 296/543 (54%), Gaps = 42/543 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ +RL L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS + + +FL+ + AVV G L++SS+A
Sbjct: 92 AAQVLLSAAVLAGLLM---------LADFLWQA------------AVVGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L V E W K ++K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSVDEHFDW---FKVAMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA ++ +GG+YLLR VF +A + E F A LL V +L LG S LG F+A
Sbjct: 188 LA-FAVMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLSAALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G S+++ +L+ V A + L++IK
Sbjct: 247 GVLLAESEYRHELENAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVAASVVILVVIKM 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L + + G+ E ++ +LSQGGEFAFV+FS A+ + + LL++ V LSM
Sbjct: 307 LTLYLLARLYGIRSSERMQFASVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVTVTLSM 366
Query: 368 ALTPLLNE-IGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPL 426
TPLL + I +W + ++ G E+ E+ + V++VGFG+ GQV+A LL A
Sbjct: 367 MTTPLLMKGIDKWLSRRLN---GPEENDEKPWVEDDKPQVIVVGFGRFGQVIARLLMA-- 421
Query: 427 ASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486
N + + D+ V RK G+ + YGDA++ +L SAG + ++++I
Sbjct: 422 ------NKMRITVLERDIGA--VNLMRKYGYKVYYGDATQVELLRSAGAEAAESIVITCN 473
Query: 487 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKG 546
+ + T++ V + FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 474 EPEDTMKLVALCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533
Query: 547 FGV 549
G+
Sbjct: 534 LGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Salmonella heidelberg (strain SL476) (taxid: 454169) |
| >sp|A9MN27|KEFB_SALAR Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 186/543 (34%), Positives = 295/543 (54%), Gaps = 42/543 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ +RL L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS + + +FL+ + A+V G L++SS+A
Sbjct: 92 AAQVLLSAAVLAGLLM---------LADFLWQA------------AIVGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L E W K +K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW---FKVGMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA ++ +GG+YLLR VF +A + E F A LL V G +L LG S LG F+A
Sbjct: 188 LA-FAVMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLGAALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G S+++ +L+ V A + L++IK
Sbjct: 247 GVLLAESEYRHELENAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVAASVVILVVIKM 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L + + G+ E ++ +LSQGGEFAFV+FS A+ + + LL++ V LSM
Sbjct: 307 LALYLLARLYGIRSSERMQFASVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVAVTLSM 366
Query: 368 ALTPLLNE-IGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPL 426
TPLL + I +W + ++ G E+ E+ + V++VGFG+ GQV+A LL A
Sbjct: 367 MTTPLLMKGIDKWLSRRLN---GPEEHDEKPWVEDDKPQVIVVGFGRFGQVIARLLMA-- 421
Query: 427 ASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486
N V + + V RK G+ + YGDA++ +L SAG + ++++I
Sbjct: 422 ------NKV--RITVLERDIGAVNLMRKYGYKVYYGDATQVELLRSAGAEAAESIVITCN 473
Query: 487 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKG 546
+ + T++ V+ + FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 474 EPEDTMKLVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533
Query: 547 FGV 549
G+
Sbjct: 534 LGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) (taxid: 41514) |
| >sp|B5FJN1|KEFB_SALDC Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella dublin (strain CT_02021853) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 186/543 (34%), Positives = 296/543 (54%), Gaps = 42/543 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ +RL L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS + + +FL+ + AVV G L++SS+A
Sbjct: 92 AAQVLLSAAVLAGLLM---------LADFLWQA------------AVVGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L E W K ++K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW---FKVAMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA ++ +GG+YLLR VF +A + E F A LL V +L LG S LG F+A
Sbjct: 188 LA-FAVMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLSAALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G S+++ +L+ V A + L++IK
Sbjct: 247 GVLLAESEYRHELENAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVAASVVILVVIKM 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L + + G+ E ++ +LSQGGEFAFV+FS A+ + + LL++ V LSM
Sbjct: 307 LTLYLLARLYGIRSSERMQFASVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVTVTLSM 366
Query: 368 ALTPLLNE-IGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPL 426
TPLL + I +W + ++ G E+ E+ + V++VGFG+ GQV+A LL A
Sbjct: 367 MTTPLLMKGIDKWLSRRLN---GPEENDEKPWVEDDKPQVIVVGFGRFGQVIARLLMA-- 421
Query: 427 ASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486
N + + D+ V RK G+ + YGDA++ +L SAG + ++++I
Sbjct: 422 ------NKMRITVLERDIGA--VNLMRKYGYKVYYGDATQVELLRSAGAEAAESIVITCN 473
Query: 487 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKG 546
+ + T++ V+ + FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 474 EPEDTMKLVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533
Query: 547 FGV 549
G+
Sbjct: 534 LGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Salmonella dublin (strain CT_02021853) (taxid: 439851) |
| >sp|B5R2A8|KEFB_SALEP Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella enteritidis PT4 (strain P125109) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 186/543 (34%), Positives = 296/543 (54%), Gaps = 42/543 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ +RL L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS + + +FL+ + AVV G L++SS+A
Sbjct: 92 AAQVLLSAAVLAGLLM---------LADFLWQA------------AVVGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L E W K ++K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW---FKVAMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA ++ +GG+YLLR VF +A + E F A LL V +L LG S LG F+A
Sbjct: 188 LA-FAVMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLSAALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G S+++ +L+ V A + L++IK
Sbjct: 247 GVLLAESEYRHELENAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVAASVVILVVIKM 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L + + G+ E ++ +LSQGGEFAFV+FS A+ + + LL++ V LSM
Sbjct: 307 LTLYLLARLYGIRSSERMQFASVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVTVTLSM 366
Query: 368 ALTPLLNE-IGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPL 426
TPLL + I +W + ++ G E+ E+ + V++VGFG+ GQV+A LL A
Sbjct: 367 MTTPLLMKGIDKWLSRRLN---GPEENDEKPWVEDDKPQVIVVGFGRFGQVIARLLMA-- 421
Query: 427 ASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486
N + + D+ V RK G+ + YGDA++ +L SAG + ++++I
Sbjct: 422 ------NKMRITVLERDIGA--VNLMRKYGYKVYYGDATQVELLRSAGAEAAESIVITCN 473
Query: 487 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKG 546
+ + T++ V+ + FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 474 EPEDTMKLVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533
Query: 547 FGV 549
G+
Sbjct: 534 LGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Salmonella enteritidis PT4 (strain P125109) (taxid: 550537) |
| >sp|Q8Z1Y7|KEFB_SALTI Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella typhi GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 187/543 (34%), Positives = 295/543 (54%), Gaps = 42/543 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ +RL L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS + + +FL+ + AVV G L++SS+A
Sbjct: 92 AAQVLLSAAVLAGLLM---------LADFLWQA------------AVVGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L E W K ++K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW---FKVAMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA ++ +GG+YLLR VF +A + E F A LL V +L LG S LG F+A
Sbjct: 188 LA-FAVMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLSAALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G S+++ +L+ V A + L++IK
Sbjct: 247 GVLLAESEYRHELENAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVAASVVILVVIKM 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L + + G+ E ++ +LSQGGEFAFV+FS A+ + + LL++ V LSM
Sbjct: 307 LTLYLLARLYGIRSSERMQFASVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVTVTLSM 366
Query: 368 ALTPLLNE-IGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPL 426
TPLL + I +W + ++ G E+ E+ + VV+VGFG+ GQV+A LL A
Sbjct: 367 MTTPLLMKGIDKWLSRRLN---GPEENDEKPWVEDDKPQVVVVGFGRFGQVIARLLMA-- 421
Query: 427 ASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486
N + + D+ V RK G+ + YGDA++ +L SAG + ++++I
Sbjct: 422 ------NKMRITVLERDIGA--VNLMRKYGYKVYYGDATQVELLRSAGAEAAESIVITCN 473
Query: 487 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKG 546
+ + T++ V + FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 474 EPEDTMKLVALCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533
Query: 547 FGV 549
G+
Sbjct: 534 LGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Salmonella typhi (taxid: 90370) |
| >sp|C0Q0D3|KEFB_SALPC Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella paratyphi C (strain RKS4594) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 186/543 (34%), Positives = 295/543 (54%), Gaps = 42/543 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ +RL L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS + + +FL+ + AVV G L++SS+A
Sbjct: 92 AAQVLLSAAVLAGLLM---------LADFLWQA------------AVVGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L E W K ++K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW---FKVAMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA ++ +GG+YLLR VF +A + E F A LL V +L LG S LG F+A
Sbjct: 188 LA-FAVMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLSAALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G S+++ +L+ V A + L++IK
Sbjct: 247 GVLLAESEYRHELENAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVAASVVILVVIKM 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L + + G+ E ++ +LSQGGEFAFV+FS A+ + + LL++ V LSM
Sbjct: 307 LTLYLLARLYGIRSSERMQFASVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVTVTLSM 366
Query: 368 ALTPLLNE-IGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPL 426
TPLL + I +W + ++ G E+ E+ + V++VGFG+ GQV+A LL A
Sbjct: 367 MTTPLLMKGIDKWLSHRLN---GPEENDEKPWVEDDKPQVIVVGFGRFGQVIARLLMA-- 421
Query: 427 ASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486
N + + D+ V RK G+ + YGDA++ +L SAG + ++++I
Sbjct: 422 ------NKMRITVLERDIGA--VNLMRKYGYKVYYGDATQVELLRSAGAEAAESIVITCN 473
Query: 487 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKG 546
+ + T++ V + FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 474 EPEDTMKLVALCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533
Query: 547 FGV 549
G+
Sbjct: 534 LGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Salmonella paratyphi C (strain RKS4594) (taxid: 476213) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 663 | ||||||
| 255554533 | 760 | Glutathione-regulated potassium-efflux s | 0.972 | 0.848 | 0.800 | 0.0 | |
| 307136449 | 788 | glutathione-regulated potassium-efflux s | 0.965 | 0.812 | 0.756 | 0.0 | |
| 449511271 | 879 | PREDICTED: K(+) efflux antiporter 3, chl | 0.975 | 0.736 | 0.758 | 0.0 | |
| 449438594 | 869 | PREDICTED: K(+) efflux antiporter 3, chl | 0.975 | 0.744 | 0.758 | 0.0 | |
| 115489604 | 791 | Os12g0617800 [Oryza sativa Japonica Grou | 0.968 | 0.811 | 0.730 | 0.0 | |
| 297809661 | 756 | predicted protein [Arabidopsis lyrata su | 0.927 | 0.813 | 0.788 | 0.0 | |
| 334186362 | 776 | K+ efflux antiporter 3 [Arabidopsis thal | 0.926 | 0.791 | 0.782 | 0.0 | |
| 414877582 | 798 | TPA: hypothetical protein ZEAMMB73_58622 | 0.895 | 0.744 | 0.808 | 0.0 | |
| 7267243 | 756 | putative potassium transporter [Arabidop | 0.926 | 0.812 | 0.782 | 0.0 | |
| 242086302 | 779 | hypothetical protein SORBIDRAFT_08g02184 | 0.895 | 0.762 | 0.803 | 0.0 |
| >gi|255554533|ref|XP_002518305.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] gi|223542525|gb|EEF44065.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/668 (80%), Positives = 583/668 (87%), Gaps = 23/668 (3%)
Query: 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63
+IL S ILGFFFAG+VLNQ G+IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF
Sbjct: 89 KILRASPILGFFFAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 148
Query: 64 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 123
AFGMGLTQV+LSTLAFTAFELPPNGA+GTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL
Sbjct: 149 AFGMGLTQVILSTLAFTAFELPPNGAIGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 208
Query: 124 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ--VSESVWPMLV 181
SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ + ES+WPML
Sbjct: 209 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQNLIEESIWPMLA 268
Query: 182 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDT 241
KESLKAL GLGLLSLGGKY+LRRVFEVVAE RSSEAF+ALCLLTV GTSL TQ LGFSDT
Sbjct: 269 KESLKALGGLGLLSLGGKYILRRVFEVVAETRSSEAFIALCLLTVTGTSLSTQMLGFSDT 328
Query: 242 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301
LGAFLAGA+LAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID++LLFREWPNVL+LLAG
Sbjct: 329 LGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLSLLAG 388
Query: 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 361
LI+IKTLIISAIGPRVGLT++ESVRIG LLSQGGEFAFVVFSLANRLGVLPLELNKLLII
Sbjct: 389 LIVIKTLIISAIGPRVGLTIRESVRIGFLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 448
Query: 362 VVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANL 421
VVVLSMALTPLLNE+GR AADFIDDKF EDK E+VN++GSEPV+I+GFGQMGQVLAN
Sbjct: 449 VVVLSMALTPLLNEVGRRAADFIDDKFDKEDKAAELVNFDGSEPVIILGFGQMGQVLANF 508
Query: 422 LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481
LSAPLASG D + GWP+VAFDLNPSVVK SR+LGFP+LYGD SRPAVL +AGI+SPKA
Sbjct: 509 LSAPLASGIDADLAGWPYVAFDLNPSVVKASRRLGFPVLYGDGSRPAVLQTAGISSPKAF 568
Query: 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541
MIM+T KKRTIEAVQRLRLAFP IPIYARAQD++HLLDLKKAGATDAILENAETSLQLGS
Sbjct: 569 MIMHTGKKRTIEAVQRLRLAFPGIPIYARAQDLVHLLDLKKAGATDAILENAETSLQLGS 628
Query: 542 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKTI 601
+LLKG GVMSDDV F+ QLVR+SME+QAQ+ LS+ DD+ ++MKPLQVRV D V +
Sbjct: 629 RLLKGLGVMSDDVDFVSQLVRDSMELQAQDALSKTDDRGLNVMKPLQVRVVDSVATQVPP 688
Query: 602 PSTSNDDKLSREDNTD---------------------TAGEDAKGVLYCELNGTNNFLDQ 640
P +S DKLSR + D + + KGV+YCELN N FL +
Sbjct: 689 PPSSPQDKLSRREQMDDRTHILRSREETSHMDDSGLQQSDDHDKGVIYCELNTENGFLGK 748
Query: 641 TKGAGEMN 648
A N
Sbjct: 749 ADDATPEN 756
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136449|gb|ADN34254.1| glutathione-regulated potassium-efflux system protein kefb [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/678 (75%), Positives = 574/678 (84%), Gaps = 38/678 (5%)
Query: 2 IMRILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 61
+ R + S ILGFFFAGIVLNQ G+IRN+ DVKVLSEWGILFLLFEMGLELS ARLKALA
Sbjct: 124 LFRKVKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALA 183
Query: 62 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAAL 121
+FAFGMGLTQV+LST+AFTAFELP NGAVGT+ILEFLFH+RSDLVNIRS+DEA+VIGAAL
Sbjct: 184 RFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVIGAAL 243
Query: 122 SLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPM 179
SLSSSAFVLQLLAEKGEL TRFGSATLGILLLQDIAVVPLLVILPVLESQ +ES+WPM
Sbjct: 244 SLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPM 303
Query: 180 LVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFS 239
L +ESLKAL GLGLLSLGGK +LRRVFEVVAEARSSEAFVALCLLTVAGTSL+TQKLGFS
Sbjct: 304 LAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFS 363
Query: 240 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALL 299
DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID++LLFREWPNVLALL
Sbjct: 364 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLALL 423
Query: 300 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLL 359
AGLI IKTLII+AIGPRVGLT QESVRIG LLSQGGEF FVV LGVLPLELNKLL
Sbjct: 424 AGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVV------LGVLPLELNKLL 477
Query: 360 IIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLA 419
II+VVLSMALTPLLNE GR A++FI +K+ +EDK + VN++ +EPVVIVGFGQMGQVLA
Sbjct: 478 IIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLA 537
Query: 420 NLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479
N LS PLASG DGNT GWP+VAFD++ SVVK SRKLGFP+LYGD SRPAVL SAGI+SPK
Sbjct: 538 NFLSTPLASGIDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPK 597
Query: 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQL 539
AVM+M+T+KK TI+AVQ+LRLAFPAIPIYARA+D++HLLDLK AGATDAILE+AETSLQL
Sbjct: 598 AVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQL 657
Query: 540 GSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEK 599
GSKLLKG GVMSD V+FL Q+VRNSMEIQAQ+ L + ++QE +IMKPLQ+RV D +E+ +
Sbjct: 658 GSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPE 717
Query: 600 TIPSTSNDDKLSREDNT--------DTAGE----------DAKGVLYCELNGTNNFLDQT 641
S +L+RED T D + D GVLYCEL+ NN +Q
Sbjct: 718 -----SELSRLNREDKTQILNGKEVDQMKQGTVFQKPEDLDGNGVLYCELDTENNLFEQ- 771
Query: 642 KGAGEMNTVNPSMPLITT 659
N V P + T
Sbjct: 772 ------NVVEPPTHITAT 783
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511271|ref|XP_004163911.1| PREDICTED: K(+) efflux antiporter 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/675 (75%), Positives = 575/675 (85%), Gaps = 28/675 (4%)
Query: 2 IMRILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 61
+ R + S ILGFFFAGIVLNQ G+IRN+ DVKVLSEWGILFLLFEMGLELS ARLKALA
Sbjct: 214 LFRRIKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALA 273
Query: 62 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAAL 121
+FAFGMGLTQV+LST+AFTAFELP NGAVGT+ILEFLFH+RSDLVNIRS+DEA+VIGAAL
Sbjct: 274 RFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVIGAAL 333
Query: 122 SLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPM 179
SLSSSAFVLQLLAEKGEL TRFGSATLGILLLQDIAVVPLLVILPVLESQ +ES+WPM
Sbjct: 334 SLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPM 393
Query: 180 LVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFS 239
L +ESLKAL GLGLLSLGGK +LRRVFEVVAEARSSEAFVALCLLTVAGTSL+TQKLGFS
Sbjct: 394 LAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFS 453
Query: 240 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALL 299
DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID++LLFREWPNVLALL
Sbjct: 454 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLALL 513
Query: 300 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLL 359
AGLI IKTLII+AIGPRVGLT QESVRIG LLSQGGEF FVV LGVLPLELNKLL
Sbjct: 514 AGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVV------LGVLPLELNKLL 567
Query: 360 IIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLA 419
II+VVLSMALTPLLNE GR A++FI +K+ +EDK + VN++ +EPVVIVGFGQMGQVLA
Sbjct: 568 IIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLA 627
Query: 420 NLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479
N LS PLASG DGNT GWP+VAFD++ SVVK SRKLGFP+LYGD SRPAVL SAGI+SPK
Sbjct: 628 NFLSTPLASGLDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPK 687
Query: 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQL 539
AVM+M+T+KK TI+AVQ+LRLAFPAIPIYARA+D++HLLDLK AGATDAILE+AETSLQL
Sbjct: 688 AVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQL 747
Query: 540 GSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEK 599
GSKLLKG GVMSD V+FL Q+VRNSMEIQAQ+ + + ++QE +IMKPLQ+RV D +E+ +
Sbjct: 748 GSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDAIDKSNEQELEIMKPLQIRVKDSIESPE 807
Query: 600 TIPSTSN-DDKLS----REDNTDTAGE--------DAKGVLYCELNGTNNFLDQTKGAGE 646
S N DK +E + G D GVLYC+L+ NNFL++
Sbjct: 808 NELSRLNLKDKTQILNGKEVDQMKQGTVFEKAEDLDGNGVLYCDLDTENNFLEE------ 861
Query: 647 MNTVNPSMPLITTTE 661
N V P I T+
Sbjct: 862 -NVVEPPTTHIAATD 875
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438594|ref|XP_004137073.1| PREDICTED: K(+) efflux antiporter 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/675 (75%), Positives = 575/675 (85%), Gaps = 28/675 (4%)
Query: 2 IMRILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 61
+ R + S ILGFFFAGIVLNQ G+IRN+ DVKVLSEWGILFLLFEMGLELS ARLKALA
Sbjct: 204 LFRRIKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALA 263
Query: 62 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAAL 121
+FAFGMGLTQV+LST+AFTAFELP NGAVGT+ILEFLFH+RSDLVNIRS+DEA+VIGAAL
Sbjct: 264 RFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVIGAAL 323
Query: 122 SLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPM 179
SLSSSAFVLQLLAEKGEL TRFGSATLGILLLQDIAVVPLLVILPVLESQ +ES+WPM
Sbjct: 324 SLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPM 383
Query: 180 LVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFS 239
L +ESLKAL GLGLLSLGGK +LRRVFEVVAEARSSEAFVALCLLTVAGTSL+TQKLGFS
Sbjct: 384 LAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFS 443
Query: 240 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALL 299
DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID++LLFREWPNVLALL
Sbjct: 444 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLALL 503
Query: 300 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLL 359
AGLI IKTLII+AIGPRVGLT QESVRIG LLSQGGEF FVV LGVLPLELNKLL
Sbjct: 504 AGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVV------LGVLPLELNKLL 557
Query: 360 IIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLA 419
II+VVLSMALTPLLNE GR A++FI +K+ +EDK + VN++ +EPVVIVGFGQMGQVLA
Sbjct: 558 IIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLA 617
Query: 420 NLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479
N LS PLASG DGNT GWP+VAFD++ SVVK SRKLGFP+LYGD SRPAVL SAGI+SPK
Sbjct: 618 NFLSTPLASGLDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPK 677
Query: 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQL 539
AVM+M+T+KK TI+AVQ+LRLAFPAIPIYARA+D++HLLDLK AGATDAILE+AETSLQL
Sbjct: 678 AVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQL 737
Query: 540 GSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEK 599
GSKLLKG GVMSD V+FL Q+VRNSMEIQAQ+ + + ++QE +IMKPLQ+RV D +E+ +
Sbjct: 738 GSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDAIDKSNEQELEIMKPLQIRVKDSIESPE 797
Query: 600 TIPSTSN-DDKLS----REDNTDTAGE--------DAKGVLYCELNGTNNFLDQTKGAGE 646
S N DK +E + G D GVLYC+L+ NNFL++
Sbjct: 798 NELSRLNLKDKTQILNGKEVDQMKQGTVFEKAEDLDGNGVLYCDLDTENNFLEE------ 851
Query: 647 MNTVNPSMPLITTTE 661
N V P I T+
Sbjct: 852 -NVVEPPTTHIAATD 865
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115489604|ref|NP_001067289.1| Os12g0617800 [Oryza sativa Japonica Group] gi|108862969|gb|ABA99872.2| Potassium transporter, putative, expressed [Oryza sativa Japonica Group] gi|113649796|dbj|BAF30308.1| Os12g0617800 [Oryza sativa Japonica Group] gi|215697125|dbj|BAG91119.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/675 (73%), Positives = 567/675 (84%), Gaps = 33/675 (4%)
Query: 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63
R++ S ILGFF AG+VLNQ G+IRNLTDVK+LSEWGILFLLFEMGLELSL+RLKALA++
Sbjct: 114 RVVKASPILGFFCAGVVLNQFGLIRNLTDVKLLSEWGILFLLFEMGLELSLSRLKALARY 173
Query: 64 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 123
AFGMGL QV+LSTLAFTAFELPPNGA+GT+IL+FLF SR DLVNIRS+DEA+VIGAALSL
Sbjct: 174 AFGMGLPQVLLSTLAFTAFELPPNGAIGTKILQFLFDSRPDLVNIRSVDEAIVIGAALSL 233
Query: 124 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ--VSESVWPMLV 181
SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ V +SVWPML+
Sbjct: 234 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQNVVEQSVWPMLL 293
Query: 182 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDT 241
ESLKAL GLGLLSLGGKYL+RR+FE VAE+RSSEAFVALCLLTV+GTSLLTQ LGFSDT
Sbjct: 294 AESLKALGGLGLLSLGGKYLIRRIFEFVAESRSSEAFVALCLLTVSGTSLLTQWLGFSDT 353
Query: 242 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301
LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID+ELL REWPNVL+LL G
Sbjct: 354 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMELLIREWPNVLSLLGG 413
Query: 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 361
LI IKTLII+AIGPRVGLTLQESVRIGLLLSQGGEF FVVFSLANRLGVLPLELNKLLII
Sbjct: 414 LIAIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLII 473
Query: 362 VVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANL 421
VVVLSMALTPLLNEIGR AA ID+K +++K EMVNY+ +EP+VI+GFG+MG+VLA
Sbjct: 474 VVVLSMALTPLLNEIGRRAAGIIDEKSETKEKPAEMVNYDATEPIVILGFGEMGKVLAKF 533
Query: 422 LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481
LSAPL+ G D + GWP+VAFDLNP+VVK +RK GFP+LYGD SRP VL SAG++SPKAV
Sbjct: 534 LSAPLSFGLDKDAEGWPYVAFDLNPAVVKSARKSGFPVLYGDGSRPLVLQSAGVSSPKAV 593
Query: 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541
M+MYT K++TIEAV RLR AFP +P+YARAQDM HLLDLKKAGAT+ +LENAETSLQLGS
Sbjct: 594 MVMYTGKEKTIEAVNRLRQAFPGVPMYARAQDMSHLLDLKKAGATEVVLENAETSLQLGS 653
Query: 542 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEA---- 597
LL+G GVMSDDV+F +LVR+SME+QAQE L+ +++E DIMKPL++R++D+VE
Sbjct: 654 MLLRGLGVMSDDVSFFSKLVRDSMELQAQEALNNIENREIDIMKPLEIRISDLVERNGNG 713
Query: 598 -------------------------EKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELN 632
E IP T+ ++ + D + ED GV YC L
Sbjct: 714 SRMIAQEDSLRLSSRPNIPLIEATLEDRIPETTGENDQTGYDFNNIDSED--GVKYCLLE 771
Query: 633 GTNNFLDQTKGAGEM 647
+++ + + + EM
Sbjct: 772 ASDDESEASNSSKEM 786
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809661|ref|XP_002872714.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318551|gb|EFH48973.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/623 (78%), Positives = 548/623 (87%), Gaps = 8/623 (1%)
Query: 3 MRILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAK 62
R+L S ILGFFFAG+VLNQ G+IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAK
Sbjct: 105 FRVLKASPILGFFFAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAK 164
Query: 63 FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALS 122
FAFGMGLTQV+L T AFTAFELPPNGA+GT+ILEFLFHSRSDLVNIRSIDEAVVIGAALS
Sbjct: 165 FAFGMGLTQVLLCTAAFTAFELPPNGAIGTKILEFLFHSRSDLVNIRSIDEAVVIGAALS 224
Query: 123 LSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPML 180
LSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ ES+WPML
Sbjct: 225 LSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQNLGGESIWPML 284
Query: 181 VKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSD 240
KES KAL GLG+LSLGGK+ LRR+FEVVAE RSSEAFVALCLLTVAGTSL+TQ LGFSD
Sbjct: 285 AKESAKALGGLGILSLGGKFFLRRIFEVVAETRSSEAFVALCLLTVAGTSLVTQWLGFSD 344
Query: 241 TLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 300
TLGAFLAGA+LAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID+E+LFREWPNVL+LL
Sbjct: 345 TLGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMEVLFREWPNVLSLLG 404
Query: 301 GLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLI 360
GLI+IKTLII+AIGPRVGLT+QESVR+G LLSQGGEFAFVVFSLANRLGVLP ELNKLLI
Sbjct: 405 GLIVIKTLIITAIGPRVGLTIQESVRVGFLLSQGGEFAFVVFSLANRLGVLPNELNKLLI 464
Query: 361 IVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLAN 420
IVVVLSMALTP LN++GR AADF+D++ DK++E VN++ SE +VI+GFGQMGQVLAN
Sbjct: 465 IVVVLSMALTPYLNQLGRKAADFLDERLDPGDKIDENVNFDVSESIVIIGFGQMGQVLAN 524
Query: 421 LLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480
LS PL S SD VGWP++ FDLNP+VVKESRKLGFPILYGD SRP+VL SAG++SPKA
Sbjct: 525 FLSTPLVSDSD--LVGWPYIGFDLNPAVVKESRKLGFPILYGDGSRPSVLQSAGVSSPKA 582
Query: 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLG 540
+MIMY KKRT EAVQRLRLAFP PIYARAQD+ HLL+LKKAGATDAILENAETSLQLG
Sbjct: 583 IMIMYKGKKRTTEAVQRLRLAFPGSPIYARAQDLPHLLELKKAGATDAILENAETSLQLG 642
Query: 541 SKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADI-VEAEK 599
SKLL GFGVMSDDV+FL ++ R+SMEIQAQE ++ + +KP+Q++ +DI VE+
Sbjct: 643 SKLLTGFGVMSDDVSFLSKVFRDSMEIQAQEEITASETNAG--LKPMQMKASDINVESGA 700
Query: 600 TIPSTSNDDKLSRED-NTDTAGE 621
++ D N+D+A E
Sbjct: 701 QQVQLMKPMQMKASDSNSDSAAE 723
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186362|ref|NP_001190675.1| K+ efflux antiporter 3 [Arabidopsis thaliana] gi|298351841|sp|Q9M0Z3.2|KEA3_ARATH RecName: Full=K(+) efflux antiporter 3, chloroplastic; Short=AtKEA3 gi|332657033|gb|AEE82433.1| K+ efflux antiporter 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/624 (78%), Positives = 545/624 (87%), Gaps = 10/624 (1%)
Query: 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63
RIL S ILGFFFAG+VLNQ G+IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF
Sbjct: 123 RILKASPILGFFFAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 182
Query: 64 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 123
AFGMGLTQV+L T AFTAFELPPNGA+GT+ILEFLFHSR DLVNIRSIDEAVVIGAALSL
Sbjct: 183 AFGMGLTQVLLCTAAFTAFELPPNGAIGTKILEFLFHSRPDLVNIRSIDEAVVIGAALSL 242
Query: 124 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPMLV 181
SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ ES+WPML
Sbjct: 243 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQDIGGESIWPMLA 302
Query: 182 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDT 241
KES KAL GLG+LSLGGK+ LRR+FEVVAE RSSEAFVALCLLTVAGTSL+TQ LGFSDT
Sbjct: 303 KESAKALGGLGILSLGGKFFLRRIFEVVAETRSSEAFVALCLLTVAGTSLVTQWLGFSDT 362
Query: 242 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301
LGAFLAGA+LAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID+E+LFREWPNVL+LL G
Sbjct: 363 LGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMEVLFREWPNVLSLLGG 422
Query: 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 361
LI+IKTLII+AIGPRVGLT+QESVR+G LLSQGGEFAFVVFSLANRLGVLP ELNKLLII
Sbjct: 423 LIVIKTLIITAIGPRVGLTIQESVRVGFLLSQGGEFAFVVFSLANRLGVLPNELNKLLII 482
Query: 362 VVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANL 421
VVVLSMALTP LN++GR AADF+D++ +K+ E VN++ SE +VI+GFGQMGQVLAN
Sbjct: 483 VVVLSMALTPYLNQLGRKAADFLDERLDPGEKIGEDVNFDVSESIVIIGFGQMGQVLANF 542
Query: 422 LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481
LS PL S SD VGWP++ FDLNP+VVKESRKLGFPILYGD SRP+VL SAG++SPKA+
Sbjct: 543 LSTPLVSDSD--LVGWPYIGFDLNPAVVKESRKLGFPILYGDGSRPSVLQSAGVSSPKAI 600
Query: 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541
MIMY KKRT EAVQRLRLAFP PIYARAQD+ HLL+LKKAGATDAILENAETSLQLGS
Sbjct: 601 MIMYKGKKRTTEAVQRLRLAFPGSPIYARAQDLPHLLELKKAGATDAILENAETSLQLGS 660
Query: 542 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADI----VEA 597
KLL GFGVMSDDV+FL ++ R+SMEIQAQE ++ + +KP+Q++ +DI
Sbjct: 661 KLLTGFGVMSDDVSFLSKVFRDSMEIQAQEEITASETNAG--LKPMQMKASDINVVSAAT 718
Query: 598 EKTIPSTSNDDKLSREDNTDTAGE 621
+K + + + N+D+A E
Sbjct: 719 QKQVQLMKPMQMKASDSNSDSAAE 742
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414877582|tpg|DAA54713.1| TPA: hypothetical protein ZEAMMB73_586225 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/596 (80%), Positives = 539/596 (90%), Gaps = 2/596 (0%)
Query: 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63
R++ S ILGFF AG+VLNQ G+IRNLTDVK+LSEWGILFLLFEMGLELSL+RLKALA++
Sbjct: 109 RVVKASPILGFFCAGVVLNQFGLIRNLTDVKLLSEWGILFLLFEMGLELSLSRLKALARY 168
Query: 64 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 123
AFGMGL QV+LSTLAFTAFELPPN A+GT+IL+FLF SR DLVNIRSIDEA+VIGAALSL
Sbjct: 169 AFGMGLPQVLLSTLAFTAFELPPNDAIGTKILQFLFDSRPDLVNIRSIDEAIVIGAALSL 228
Query: 124 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ--VSESVWPMLV 181
SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ + +SVWP+L+
Sbjct: 229 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQNIIEQSVWPILL 288
Query: 182 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDT 241
ESLKAL GLGLLSLGGKY +RRVFE VAE+RSSEAFVALCLLTVAGTSL+TQKLGFSDT
Sbjct: 289 AESLKALGGLGLLSLGGKYFIRRVFEFVAESRSSEAFVALCLLTVAGTSLITQKLGFSDT 348
Query: 242 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301
LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID++LL REWPNVL+LL G
Sbjct: 349 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLIREWPNVLSLLGG 408
Query: 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 361
LI+IKTLII+AIGPRVGLTL+ESVRIGLLLSQGGEF FVVFSLANRLGVLPLELNKLLII
Sbjct: 409 LIVIKTLIITAIGPRVGLTLKESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLII 468
Query: 362 VVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANL 421
VVVLSMALTPLLNE+GR A ID++ ++K EMVNY +EPVVI+GFG+MGQVLA
Sbjct: 469 VVVLSMALTPLLNEVGRRVAGMIDERSEEKEKPAEMVNYGATEPVVILGFGEMGQVLAKF 528
Query: 422 LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481
LSAPL+ G + +T GWP+VAFDLNP VVK +RK GFP+L+GD SRPAVL SAGIT PKA+
Sbjct: 529 LSAPLSFGIEKDTEGWPYVAFDLNPVVVKSARKSGFPVLFGDGSRPAVLQSAGITFPKAI 588
Query: 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541
M+MYT K++TIE+V RLR AF A+PIYARAQD+ HLLDLKKAGATD +LENAETSLQLGS
Sbjct: 589 MVMYTGKEKTIESVSRLRQAFTAVPIYARAQDLSHLLDLKKAGATDVVLENAETSLQLGS 648
Query: 542 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEA 597
LLKG GVMSDDV+FL +LVR+SME+QAQE L DQE DIMKPLQVRV+D+VE+
Sbjct: 649 ILLKGLGVMSDDVSFLSKLVRDSMELQAQEALKDIGDQEVDIMKPLQVRVSDLVES 704
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7267243|emb|CAB80850.1| putative potassium transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/624 (78%), Positives = 545/624 (87%), Gaps = 10/624 (1%)
Query: 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63
RIL S ILGFFFAG+VLNQ G+IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF
Sbjct: 103 RILKASPILGFFFAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 162
Query: 64 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 123
AFGMGLTQV+L T AFTAFELPPNGA+GT+ILEFLFHSR DLVNIRSIDEAVVIGAALSL
Sbjct: 163 AFGMGLTQVLLCTAAFTAFELPPNGAIGTKILEFLFHSRPDLVNIRSIDEAVVIGAALSL 222
Query: 124 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPMLV 181
SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ ES+WPML
Sbjct: 223 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQDIGGESIWPMLA 282
Query: 182 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDT 241
KES KAL GLG+LSLGGK+ LRR+FEVVAE RSSEAFVALCLLTVAGTSL+TQ LGFSDT
Sbjct: 283 KESAKALGGLGILSLGGKFFLRRIFEVVAETRSSEAFVALCLLTVAGTSLVTQWLGFSDT 342
Query: 242 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301
LGAFLAGA+LAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID+E+LFREWPNVL+LL G
Sbjct: 343 LGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMEVLFREWPNVLSLLGG 402
Query: 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 361
LI+IKTLII+AIGPRVGLT+QESVR+G LLSQGGEFAFVVFSLANRLGVLP ELNKLLII
Sbjct: 403 LIVIKTLIITAIGPRVGLTIQESVRVGFLLSQGGEFAFVVFSLANRLGVLPNELNKLLII 462
Query: 362 VVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANL 421
VVVLSMALTP LN++GR AADF+D++ +K+ E VN++ SE +VI+GFGQMGQVLAN
Sbjct: 463 VVVLSMALTPYLNQLGRKAADFLDERLDPGEKIGEDVNFDVSESIVIIGFGQMGQVLANF 522
Query: 422 LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481
LS PL S SD VGWP++ FDLNP+VVKESRKLGFPILYGD SRP+VL SAG++SPKA+
Sbjct: 523 LSTPLVSDSD--LVGWPYIGFDLNPAVVKESRKLGFPILYGDGSRPSVLQSAGVSSPKAI 580
Query: 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541
MIMY KKRT EAVQRLRLAFP PIYARAQD+ HLL+LKKAGATDAILENAETSLQLGS
Sbjct: 581 MIMYKGKKRTTEAVQRLRLAFPGSPIYARAQDLPHLLELKKAGATDAILENAETSLQLGS 640
Query: 542 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADI----VEA 597
KLL GFGVMSDDV+FL ++ R+SMEIQAQE ++ + +KP+Q++ +DI
Sbjct: 641 KLLTGFGVMSDDVSFLSKVFRDSMEIQAQEEITASETNAG--LKPMQMKASDINVVSAAT 698
Query: 598 EKTIPSTSNDDKLSREDNTDTAGE 621
+K + + + N+D+A E
Sbjct: 699 QKQVQLMKPMQMKASDSNSDSAAE 722
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242086302|ref|XP_002443576.1| hypothetical protein SORBIDRAFT_08g021840 [Sorghum bicolor] gi|241944269|gb|EES17414.1| hypothetical protein SORBIDRAFT_08g021840 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/596 (80%), Positives = 539/596 (90%), Gaps = 2/596 (0%)
Query: 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63
R++ S ILGFF AG+VLNQ G+IRNLTDVK+LSEWGILFLLFEMGLELSL+RLKALA++
Sbjct: 102 RVVKASPILGFFCAGVVLNQFGLIRNLTDVKLLSEWGILFLLFEMGLELSLSRLKALARY 161
Query: 64 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSL 123
AFGMGL QV+LSTLAFTAFELPPNGA+GT+IL+FLF SR DLVNIRSIDEA+VIGAALSL
Sbjct: 162 AFGMGLPQVLLSTLAFTAFELPPNGAIGTKILQFLFDSRPDLVNIRSIDEAIVIGAALSL 221
Query: 124 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ--VSESVWPMLV 181
SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ V S+WP+L+
Sbjct: 222 SSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQNIVERSLWPLLL 281
Query: 182 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDT 241
ESLKAL GLGLLSLGGKYL+RRVFE VAE+RSSEAFVALCLLTVAGTSL+TQKLGFSDT
Sbjct: 282 AESLKALGGLGLLSLGGKYLMRRVFEFVAESRSSEAFVALCLLTVAGTSLITQKLGFSDT 341
Query: 242 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301
LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFF+TTG+SID++LL REWPNVL LL G
Sbjct: 342 LGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFMTTGTSIDMQLLIREWPNVLTLLGG 401
Query: 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 361
L+ IKTLII+AIGPRVGLTL+ESVRIGLLLSQGGEF FVVFSLANRLGVLPLELNKLLII
Sbjct: 402 LVAIKTLIITAIGPRVGLTLKESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLII 461
Query: 362 VVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANL 421
VVVLSMALTPLLNE+GR A ID++ ++K EMVNY +EPVVI+GFG+MGQVLAN
Sbjct: 462 VVVLSMALTPLLNEVGRRVAGIIDERSEEKEKPAEMVNYGATEPVVILGFGEMGQVLANF 521
Query: 422 LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481
LSAPL+ G + +T GWP+VAFDLNP+VVK +RK GF +LYGD SRP+VL SAGIT PKA+
Sbjct: 522 LSAPLSFGIEKDTEGWPYVAFDLNPAVVKSARKSGFRVLYGDGSRPSVLQSAGITFPKAI 581
Query: 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541
M+MYT K++TIE+V RLR AF A+PIYARA+D+ HLLDLKKAGATD +LENAETSLQLGS
Sbjct: 582 MVMYTGKEKTIESVNRLRQAFTAVPIYARAKDLSHLLDLKKAGATDVVLENAETSLQLGS 641
Query: 542 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEA 597
LLKG GVMSDDV+FL +LVR+SME+QAQE L DQ+ DIMKPLQVRV+D+V++
Sbjct: 642 ILLKGLGVMSDDVSFLSKLVRDSMELQAQEALKDIGDQDVDIMKPLQVRVSDLVDS 697
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 663 | ||||||
| TAIR|locus:2198215 | 1193 | KEA1 "K+ efflux antiporter 1" | 0.760 | 0.422 | 0.318 | 1.2e-55 | |
| TIGR_CMR|ECH_0146 | 568 | ECH_0146 "putative glutathione | 0.662 | 0.772 | 0.271 | 7.8e-54 | |
| TIGR_CMR|APH_1305 | 571 | APH_1305 "glutathione-regulate | 0.684 | 0.795 | 0.279 | 1.4e-52 | |
| TIGR_CMR|CPS_1593 | 655 | CPS_1593 "putative glutathione | 0.671 | 0.679 | 0.286 | 2.9e-52 | |
| TIGR_CMR|SO_1481 | 589 | SO_1481 "glutathione-regulated | 0.497 | 0.560 | 0.317 | 6.6e-52 | |
| TIGR_CMR|SO_1647 | 648 | SO_1647 "glutathione-regulated | 0.639 | 0.654 | 0.299 | 7.7e-48 | |
| TIGR_CMR|CPS_3340 | 610 | CPS_3340 "glutathione-regulate | 0.835 | 0.908 | 0.274 | 1.4e-46 | |
| UNIPROTKB|Q0C665 | 601 | kefC "Glutathione-regulated po | 0.521 | 0.575 | 0.297 | 4.9e-43 | |
| TIGR_CMR|SPO_1424 | 626 | SPO_1424 "glutathione-regulate | 0.529 | 0.560 | 0.276 | 1.4e-42 | |
| UNIPROTKB|Q9KNX4 | 656 | VC_2606 "Glutathione-regulated | 0.571 | 0.577 | 0.291 | 1.4e-42 |
| TAIR|locus:2198215 KEA1 "K+ efflux antiporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 1.2e-55, P = 1.2e-55
Identities = 174/546 (31%), Positives = 256/546 (46%)
Query: 9 SQILGFFFAGIVLNQLG--IIRNLTDVKVLSEWGILFLLFEMGLEXXXXXXXXXXXXXXG 66
S +LG+ AGI++ G IIRN+ + ++E+G++FLLF +GLE G
Sbjct: 613 SPVLGYLAAGILIGPYGLSIIRNVHGTRAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 672
Query: 67 MGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGXXXXXXXX 126
+G QV++ TA VG L H V ++ A+VIG
Sbjct: 673 LGSAQVLV-----TA------AVVG-----LLAH----YVAGQAGPAAIVIGNGLALSST 712
Query: 127 XXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQVSES-VWPMLVKEXX 185
E+GE +R G A+ +LL QD+A S+ + + E
Sbjct: 713 AVVLQVLQERGESTSRHGRASFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEAL 772
Query: 186 XXXXXXXXXXXXXXXXXRR-----VFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSD 240
R +++ +AE R++E F A LL + GTSLLT + G S
Sbjct: 773 GLAAVKAAVAITAIIAGGRLLLRPIYKQIAENRNAEIFSANTLLVILGTSLLTARAGLSM 832
Query: 241 TLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXX 300
LGAFLAG +LAET F Q+E+DI P+R +T G SID +LL +P +
Sbjct: 833 ALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIVGTLG 892
Query: 301 XXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLI 360
G G+++ ++R+GLLL+ GGEFAFV F A G++ +L+ LL
Sbjct: 893 LLIVGKTMLVVIMGKLFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSPQLSSLLF 952
Query: 361 IVVVLSMALTPLLNEIGRWAADFID-DKFGSEDKVE-EMVNYEGSEPVVIVGFGQMGQVL 418
+VV +SMA+TP L G+ A + S VE E + +G ++I GFG++GQ++
Sbjct: 953 LVVGISMAITPWLAAGGQLIASRFELHDVRSLLPVESETDDLQGH--IIICGFGRVGQII 1010
Query: 419 ANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478
A LLS L PFVA D++ V R L P+ +GDA VL G
Sbjct: 1011 AQLLSERLI----------PFVALDVSSDRVTIGRSLDLPVYFGDAGSKEVLHKIGAGRA 1060
Query: 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQ 538
A ++ V L +P + + RA D++H L+L+KAGAT + E E SLQ
Sbjct: 1061 CAAVVALDAPGANYRCVWALSKFYPNVKTFVRAHDVVHGLNLEKAGATAVVPETLEPSLQ 1120
Query: 539 LGSKLL 544
L + +L
Sbjct: 1121 LAAAVL 1126
|
|
| TIGR_CMR|ECH_0146 ECH_0146 "putative glutathione-regulated potassium-efflux system protein KefB" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 122/450 (27%), Positives = 208/450 (46%)
Query: 114 AVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQVS 173
+++IG EKG T+ G ++ +LLLQD A +
Sbjct: 116 SIIIGGALALSSTAIVLQVLQEKGYQSTQVGRLSIAVLLLQDFAVVPLIVLLPLLTGESH 175
Query: 174 ESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFVALCLLTVAGTSLLT 233
S+ L+ R +F +A +S+E F+A LL V G + +T
Sbjct: 176 HSIPISLLYSFVKAAIALTLIFITGRLLLRPLFNTIAAMKSNEIFIATTLLIVLGAAFIT 235
Query: 234 QKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFREWP 293
+ S LGAF++G ++AET +R +E + PF+ +T G SIDI+ + + P
Sbjct: 236 ENFNLSMALGAFVSGLLVAETEYRHDVEQVVLPFKRLLLGLFFMTVGMSIDIKFVLNKLP 295
Query: 294 NVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL 353
+ L +++ GLLLSQGGEFAF++F LA VL
Sbjct: 296 IITLASISLIALKSFIIFILCRFFRFQLAAAIQAGLLLSQGGEFAFILFGLAAEKNVLSS 355
Query: 354 ELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEG-SEPVVIVGFG 412
+L + L+++ ++MA TPLL +G W + I K S + E +++ + + V++VGFG
Sbjct: 356 DLAQTLMMITTVTMAFTPLLATLGDWISKLITKKKISLNSQELILDTKDLDQHVIVVGFG 415
Query: 413 QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS 472
++G+++A +L A + ++A D+ P +VK+ GFP+ GD ++ L S
Sbjct: 416 RVGRMVAKVLVAEHVN----------YIASDIQPKIVKDGIDEGFPVYLGDLTKLNTLQS 465
Query: 473 AGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILEN 532
I+ + ++I ++ + + + FP I I R D+ ++ K+ GA I E
Sbjct: 466 MAISRARMIIIAINNEVTIKKIISLVAKNFPHIIIIVRLPDLSNVEIYKELGAHYLIPET 525
Query: 533 AETSLQLGSKLLKGFGVMSDDVTFLRQLVR 562
E LQLG+ L G + ++ L+ R
Sbjct: 526 YEVGLQLGAVALSNNGFSNHAISLLKDRFR 555
|
|
| TIGR_CMR|APH_1305 APH_1305 "glutathione-regulated potassium-efflux system protein" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 131/468 (27%), Positives = 210/468 (44%)
Query: 112 DEAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQ 171
+ +VVIG EKG ++ G ++ +LLLQD A +
Sbjct: 114 ESSVVIGGALALSSTAIVLQVLQEKGMQSSQVGRLSIAVLLLQDFAVVPLIVLLPLLAGE 173
Query: 172 VSESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFVALCLLTVAGTSL 231
+ V + + R +F +A +S+E F+A LL V G +
Sbjct: 174 SNSLVGSLFIA-FLKAGVALALIFVTGRLLLRPLFGTIAAMKSNEVFIASTLLIVLGAAF 232
Query: 232 LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFRE 291
+T+ S LGAF++G ++AET +R +E + PF+ +T G SID ELL +
Sbjct: 233 VTENFNLSMALGAFVSGLLVAETEYRYDVEQVVLPFKKLLLGLFFMTVGMSIDTELLLSK 292
Query: 292 WPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVL 351
P V +L ++ GLLLSQGGEF+F++F LA VL
Sbjct: 293 LPVVAALSLSLMLLKSFIVCVLCRCFRFSLSAGLQAGLLLSQGGEFSFILFGLAAEKSVL 352
Query: 352 PLELNKLLIIVVVLSMALTPLLNEIGRWAADFID-DKFGSEDKVEEMVNYEGSEPVVIVG 410
+L ++L++ ++MA TPLL +G W + F+ +K + + + V++VG
Sbjct: 353 SHDLAQVLMMATTVTMAFTPLLATLGNWISGFLTKNKVSYTSSALVLDTSDLDQHVIVVG 412
Query: 411 FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 470
FG++G+++A +L A + ++A D+ PSVV E RK GFP+ GD ++ VL
Sbjct: 413 FGRVGRLVAKVLMAEHVN----------YIASDIQPSVVTEGRKEGFPVYLGDLTKLEVL 462
Query: 471 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAIL 530
+ G + A+ I ++ + + + FP I R D+ + KK GA I
Sbjct: 463 TAMGASRATAIAIAINNEVTAKKVIALVAKNFPDTIIAVRIPDLSNADMYKKLGAHYLIP 522
Query: 531 ENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDD 578
E E LQLG L G + + L+ R ME + V + D
Sbjct: 523 ETYEAGLQLGGIALSISGFSDNAILSLQNAFR--MEDYQRPVKKESSD 568
|
|
| TIGR_CMR|CPS_1593 CPS_1593 "putative glutathione-regulated potassium-efflux system protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 133/464 (28%), Positives = 222/464 (47%)
Query: 90 VGTRILEFLFHSRSDLVNIRSIDEAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLG 149
VG +L F+ + L S EA V+G E G + + G ++
Sbjct: 92 VGISLLVFII---AGLFFGLSFSEAFVVGSILALSSTAIVIRQLSETGAMKRKSGQLSVA 148
Query: 150 ILLLQDIAXXXXXXXX--XXXESQVSESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFE 207
ILL QD+A +SQ S VW +++ +VF
Sbjct: 149 ILLFQDVAVVPLLIIIPMLAMDSQ-SSMVWALMLA-MVKGVVVVALLLLIGKWLLPKVFN 206
Query: 208 VVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPF 267
++A+ R+ E FV LL + TQ G S LGAFLAG +L+E+ ++ Q+EADIRP+
Sbjct: 207 IIAQVRTDELFVLTTLLVTLLAAAFTQWFGLSMALGAFLAGMMLSESEYKHQLEADIRPY 266
Query: 268 RXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRI 327
R +T G +D+ LL ++ + G + +++
Sbjct: 267 RDILLGLFFITVGMKLDVSLLISSPFSLLGLMLCFMLVKIMVIKILAVKAGESSKDAWAS 326
Query: 328 GLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTP-LLNEIGRWAADFIDD 386
GL+L+Q GEF FV+ +LAN+ +LPL++ +L+ V+SMA+TP ++N WA +
Sbjct: 327 GLMLAQMGEFGFVLIALANQSQILPLDVASMLLGAGVISMAITPFMINNARSWALFLSQE 386
Query: 387 KFGSEDKVEEMVNYEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN 445
K + ++ + E VVI GFG++GQ ++ L FVA D++
Sbjct: 387 KSPESLDLSQLPENKVLENHVVICGFGRVGQTVSRFLKQDEID----------FVAIDVD 436
Query: 446 PSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAI 505
P +++R+ G +L+G + + VL +A ++ K V+I + D K+++E +Q++R +
Sbjct: 437 PLRTQKAREAGEKVLFGSSRQTEVLNAAHLSEAKLVVIAFGDDKQSLEVIQKVRSMNEKV 496
Query: 506 PIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGV 549
PI R ++ L L+ AGA + + E+ E SL L S++L GV
Sbjct: 497 PILVRTRNDDQLDALQAAGANEVVPESLEGSLMLVSQVLSLTGV 540
|
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| TIGR_CMR|SO_1481 SO_1481 "glutathione-regulated potassium-efflux system protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 110/346 (31%), Positives = 181/346 (52%)
Query: 204 RVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEAD 263
RV ++VA + E A LL V G++ L + LG S +GAFLAG +LA +++R Q+E D
Sbjct: 204 RVLKLVASSGVREVLTAFALLLVMGSAQLMEWLGLSAGMGAFLAGIMLANSSYRHQLETD 263
Query: 264 IRPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQE 323
I PF+ + G S+D++L + + G T +
Sbjct: 264 IEPFKGLLLGLFFMAVGMSMDLKLFLTDPLLILAILLGMLLIKTLVLMLLGRVRHHTWRP 323
Query: 324 SVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADF 383
S+ +GL+L++GGEFAFV+ S A ++ ++ ++L++ + LSMA+TP++ + R
Sbjct: 324 SIALGLILAEGGEFAFVLLSQAQLSSIVDDKIAQILVLAIGLSMAVTPMIFTLFRATKPK 383
Query: 384 IDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD 443
+ D ++ + +N SE VVI GFG++GQ+ +L++ G PFVA D
Sbjct: 384 VVDT-----RLPDTINVTESE-VVIAGFGRVGQITGRILASS----------GIPFVALD 427
Query: 444 LNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP 503
+ S V R+ G + +GDA R +L+SAGI + +++ + +IE Q+++ FP
Sbjct: 428 KDASHVDVIRQYGGEVYFGDARRLDMLMSAGIARSRLLLLAVDSVEDSIEIAQQVKTHFP 487
Query: 504 AIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGV 549
I I ARA+D H L G TD E ++L K+L+G G+
Sbjct: 488 HINIIARARDRNHAYRLMSLGVTDVFRETFGSALSASEKILQGLGL 533
|
|
| TIGR_CMR|SO_1647 SO_1647 "glutathione-regulated potassium-efflux system protein KefB, putative" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 132/441 (29%), Positives = 199/441 (45%)
Query: 113 EAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQV 172
E++VIG E G L R G ++ +LL QD+A
Sbjct: 113 ESLVIGAAIALSSTAIVLKLLNELGWLRRRHGELSVSVLLFQDLAVVPLLILLPLLGQSD 172
Query: 173 SESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFVALCLLTVAGTSLL 232
V + R+F+ VA +RS+E FV L+ T
Sbjct: 173 EPLVLASIAWALLKGILAFFFLMALGKWALPRLFDEVARSRSNELFVLSTLVVALVTGAF 232
Query: 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFREW 292
TQ LG S LGAF+AG +L E+ +R Q+EADIRPFR ++ G ++ L+ + W
Sbjct: 233 TQWLGLSMALGAFMAGMLLGESQYRRQLEADIRPFRDLLMGLFFISIGMMLNFALVIQFW 292
Query: 293 PNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLP 352
+ VG + ++ L L+Q GEF+FVV +LA G+L
Sbjct: 293 WQILLILLAVVFGKALIIHGLLRLVGEPFRIAISTALSLAQVGEFSFVVLALAVSYGLLS 352
Query: 353 LELNKLLIIVVVLSMALTPLL----NEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVI 408
E + +L++V VLSM++ P L +I +W G D V ++ + + VVI
Sbjct: 353 NETSTMLVMVAVLSMSIAPWLVRHCMDIAKWLLGIRQS--GHVDDVVPVIT-DDHDLVVI 409
Query: 409 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA 468
+G+G++GQ +A L T P++ DL+P+ V E+R+ G PI +GD + A
Sbjct: 410 LGYGRVGQTIARFLK----------TEAVPYLVLDLDPTRVYEARRAGEPIYFGDVCKRA 459
Query: 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDA 528
+L GI K ++I + + + EA+ R P I R +D L L+KAGA
Sbjct: 460 ILKQIGIKHAKMIVITFCESRSVEEALPLCRQLAPEANILVRTRDDSELDLLQKAGANQV 519
Query: 529 ILENAETSLQLGSKLLKGFGV 549
I E E SL L S++L GV
Sbjct: 520 IPETLEGSLMLVSQVLHQCGV 540
|
|
| TIGR_CMR|CPS_3340 CPS_3340 "glutathione-regulated potassium-efflux system protein KefC" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 167/609 (27%), Positives = 265/609 (43%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLEXXXXXXXXXXXXXXGMG 68
+LG+ AGI++ LG++ + TDV +E+G++ +LF +GLE G+G
Sbjct: 27 VLGYLLAGILIGPFLLGLVGDQTDVMHFAEFGVVMMLFLVGLELQPSRLWKLRHSIIGLG 86
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGXXXXXXXXXX 128
QVV++TL +A A T IL + + ++ IG
Sbjct: 87 GLQVVVTTLLISA-------ACYT-ILSLAWQT------------SLAIGLMLALSSTAI 126
Query: 129 XXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXX--XXXESQVSESV--------WP 178
EKG + G +LL QDIA +S+S +P
Sbjct: 127 VLQTLNEKGWIKQEAGQNAFSVLLFQDIAVIPILALVPLLAFSDNISDSGSHGNLIEHFP 186
Query: 179 MLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGF 238
+ + + +F +AE R E F L V +++ QK+G
Sbjct: 187 VYI-QTAISVGVIAAIILAGKYVSAPLFRYIAETRLRELFTVFALFLVIVIAVIMQKIGL 245
Query: 239 SDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXX 298
S LG FLAG +LAE+ FR ++E DI PF+ +T G+SID LLF E V
Sbjct: 246 SPALGTFLAGVVLAESEFRHELEVDIEPFKGLLLGLFFITVGASIDFPLLFEELGLVTLL 305
Query: 299 XXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKL 358
+ ++ + L L+QGGEFAFV+ SL + L +L E +K+
Sbjct: 306 VVSLIAIKAAVLFLLSILFKMEKKQKLLFTLALAQGGEFAFVLLSLTSSLQILTPEQSKI 365
Query: 359 LIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVL 418
+VV +SM + P+L D + DK E++ E ++ V+I G+G+ GQ++
Sbjct: 366 TTLVVAISMLMAPVLLIFYEKVLDKEAENAREFDKPEDI---EATKSVIIAGYGRFGQIV 422
Query: 419 ANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478
LL GS G + D +P+ + +K G + YGDA+R +L ++G
Sbjct: 423 GRLL------GSQG----YHLSILDHSPTQIDLLKKFGNKVFYGDAARKDLLEASGAQEA 472
Query: 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQ 538
+ ++I D + IE Q + +P + I ARA D H +L + G E E++L
Sbjct: 473 QLLVIAIDDADKIIEIAQLAQKHYPNLQIVARAIDRHHAYELIRIGVKTIKRETFESALG 532
Query: 539 LGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK--DDQEFDI-----MKPL-QVR 590
LG L+ G + QL + + ++ VLS+ DD + + M+ L QV
Sbjct: 533 LGVSALELLGNSQESAKRAGQLF-SEHDRESMHVLSEVWGDDHSYGVAVKQRMELLKQVL 591
Query: 591 VADIVEAEK 599
V+D E K
Sbjct: 592 VSDEEEQSK 600
|
|
| UNIPROTKB|Q0C665 kefC "Glutathione-regulated potassium-efflux system protein KefC" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 4.9e-43, Sum P(3) = 4.9e-43
Identities = 108/363 (29%), Positives = 177/363 (48%)
Query: 205 VFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADI 264
VF ++A AR+ E A LL V G + Q G S +GAFLAG +L+E+++R ++EADI
Sbjct: 213 VFRILAAARAREVMTAASLLLVLGAAWWMQLGGLSTAMGAFLAGVLLSESSYRHELEADI 272
Query: 265 RPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQES 324
PFR + G S+D+ ++ W + +E+
Sbjct: 273 EPFRGILLGLFFLAVGMSLDLNVVLGNWEIIALSVIAFTLLKAAGVYGVARAFRANHREA 332
Query: 325 VRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEI-GRWAADF 383
V +L++QGGEFAFV+++ A +G++ E + +L ++++SM +TPL I R +
Sbjct: 333 VERTVLMTQGGEFAFVLYAAALAVGIIDPEGSAMLTAIIIVSMLMTPLFVLIHDRLMPEV 392
Query: 384 IDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD 443
D G VE + G+ +++GFG+ GQV+ S PL + G+ D
Sbjct: 393 EVDASG----VETPADVRGT--ALLIGFGRFGQVV----SQPLLAR------GYTITTID 436
Query: 444 LNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP 503
+P +++ + + GF + YGD +R +L +AG V++ D+ + V+ +R FP
Sbjct: 437 NDPEMIRVAGQFGFKVWYGDGARLDILHAAGAHHASLVLVCVDDQAAATKIVELVRHEFP 496
Query: 504 AIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRN 563
+ ARA D H L+L KAG + E E++L+ L G D +T VR
Sbjct: 497 NALLLARAYDRDHGLELVKAGVDYPVRETFESALKFAHAALDRLGEPEDAITDALDEVRR 556
Query: 564 SME 566
E
Sbjct: 557 RDE 559
|
|
| TIGR_CMR|SPO_1424 SPO_1424 "glutathione-regulated potassium-efflux system protein KefC" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 103/373 (27%), Positives = 182/373 (48%)
Query: 203 RRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEA 262
R +F + +R E + AL L+ V G S L +G S LGAFLAG +LA + FR ++E+
Sbjct: 227 RPLFRFIHASRLREMYTALALMIVVGISFLMTLVGLSPALGAFLAGVVLANSEFRHEMES 286
Query: 263 DIRPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQ 322
D+ PF+ +T G+ ID+ + ++ G L +
Sbjct: 287 DLEPFKGLLLGLFFITVGAGIDVGFFLADPLDLIGLALLVILFKGVILYIVGRAFQLKGR 346
Query: 323 ESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAAD 382
+ L L+Q GEF FV+ + + + V+P L++ L++++ L+M +TPLL + +
Sbjct: 347 DRWLFTLGLAQAGEFGFVLLAFSTQQNVIPAHLSQKLLMIIALTMMITPLLFILYELLSR 406
Query: 383 FIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF 442
+ D D V + ++ +G PV+I G G+ GQ++ L++A G+ +
Sbjct: 407 RMRDHVA--DMVPDTIDEQG--PVIIAGIGRFGQIVNRLVTAS----------GFKTIVL 452
Query: 443 DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502
D + ++ R+ G GD +RP +L +AG+ + ++ D + + V R
Sbjct: 453 DHDMETIQLMRRFGVKGFLGDPTRPELLKAAGLAKAQVLVAALDDDNQVTKLVAYARRQR 512
Query: 503 PAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDV-----TFL 557
P + I ARA+D H+ +L +AGA D + E ++S++ G +L+ G+ + TF
Sbjct: 513 PDLHIIARARDRNHVYELYRAGANDIVREMFDSSVRAGRYVLENVGLSEYEAAQAAQTFY 572
Query: 558 ---RQLVRNSMEI 567
RQ VR+ E+
Sbjct: 573 HHDRQAVRDLAEV 585
|
|
| UNIPROTKB|Q9KNX4 VC_2606 "Glutathione-regulated potassium-efflux system protein KefB" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 116/398 (29%), Positives = 189/398 (47%)
Query: 205 VFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADI 264
+F +A + E F LL V G +LL QK+G S LG FLAG ILAE+ FR ++E I
Sbjct: 260 LFRYIALSGVRELFTVAALLLVVGIALLMQKVGLSMALGTFLAGVILAESEFRHELEIAI 319
Query: 265 RPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQES 324
PF+ ++ G ++D+ LL + + G +
Sbjct: 320 DPFKGLLLGLFFISVGMAVDVGLLLVKPLQIMLAVLGLVIVKGLVLYLLARLSGTVAKAR 379
Query: 325 VRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGR-WAADF 383
++ +LSQGGEFAFV+F+ A+ G+L L++VV LSM TPLL + W A
Sbjct: 380 SKMAAILSQGGEFAFVIFTAASAEGLLTASQVSFLLVVVSLSMVTTPLLLSAQKYWFARQ 439
Query: 384 IDDKFGSEDKVEEMVNYEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF 442
++ + E+ + V E EP V+IVGFG+ GQ++ LL A N + +
Sbjct: 440 LNIE---ENPLTPDV--ENKEPRVIIVGFGRFGQIVGRLLYA--------NKIKVTILES 486
Query: 443 DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502
D S V+ RK G+ + YGDA+ +L +AG+ +A+++ D ++ I V+ + F
Sbjct: 487 DA--SQVRLLRKYGYKVFYGDATNLELLRAAGVEQAEALVVCTDDPEQVITIVELCQQHF 544
Query: 503 PAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 562
P + + ARA+ + L G + E ++L LG K L G+ +
Sbjct: 545 PNLKLLARARSRVEAYQLMSLGVQNYTRETFLSALDLGRKALVQLGMHPYQAKRAEEHFH 604
Query: 563 NSMEIQAQEVLSQ-KDDQEFDIM-KPLQVRVADIVEAE 598
+ +E+L Q +D++ ++ K + + +I E
Sbjct: 605 RLDKTMLKELLPQHNEDKQLELRAKEARTELEEIFSRE 642
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A9R473 | KEFB_YERPG | No assigned EC number | 0.3316 | 0.8340 | 0.9186 | yes | no |
| A4TGX5 | KEFB_YERPP | No assigned EC number | 0.3316 | 0.8340 | 0.9186 | yes | no |
| Q8ZJC4 | KEFB_YERPE | No assigned EC number | 0.3316 | 0.8340 | 0.9186 | yes | no |
| B1JIU4 | KEFB_YERPY | No assigned EC number | 0.3316 | 0.8340 | 0.9186 | yes | no |
| B2VK47 | KEFB_ERWT9 | No assigned EC number | 0.3170 | 0.8295 | 0.9151 | yes | no |
| Q1C2S9 | KEFB_YERPA | No assigned EC number | 0.3316 | 0.8340 | 0.9186 | yes | no |
| Q1CCS7 | KEFB_YERPN | No assigned EC number | 0.3316 | 0.8340 | 0.9186 | yes | no |
| Q664Q5 | KEFB_YERPS | No assigned EC number | 0.3316 | 0.8340 | 0.9186 | yes | no |
| Q9M0Z3 | KEA3_ARATH | No assigned EC number | 0.7820 | 0.9260 | 0.7912 | yes | no |
| Q6CZU5 | KEFB_ERWCT | No assigned EC number | 0.3207 | 0.8446 | 0.9286 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 663 | |||
| PRK03562 | 621 | PRK03562, PRK03562, glutathione-regulated potassiu | 1e-103 | |
| PRK03659 | 601 | PRK03659, PRK03659, glutathione-regulated potassiu | 2e-94 | |
| COG0475 | 397 | COG0475, KefB, Kef-type K+ transport systems, memb | 2e-58 | |
| pfam00999 | 370 | pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang | 4e-55 | |
| TIGR00932 | 273 | TIGR00932, 2a37, transporter, monovalent cation:pr | 5e-50 | |
| COG4651 | 408 | COG4651, RosB, Kef-type K+ transport system, predi | 4e-31 | |
| PRK10669 | 558 | PRK10669, PRK10669, putative cation:proton antipor | 2e-24 | |
| pfam02254 | 116 | pfam02254, TrkA_N, TrkA-N domain | 3e-20 | |
| COG1226 | 212 | COG1226, Kch, Kef-type K+ transport systems, predi | 2e-14 | |
| PLN03159 | 832 | PLN03159, PLN03159, cation/H(+) antiporter 15; Pro | 4e-10 | |
| COG0569 | 225 | COG0569, TrkA, K+ transport systems, NAD-binding c | 1e-06 | |
| COG0025 | 429 | COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport | 4e-04 |
| >gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Score = 328 bits (842), Expect = e-103
Identities = 178/541 (32%), Positives = 280/541 (51%), Gaps = 40/541 (7%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AG ++ L ++ ++ + +E+G++ +LF +GLEL RL L + FG G
Sbjct: 32 VLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
Q+V F + +G + + A++IG L+LSS+A
Sbjct: 92 ALQMVACGGLLGLFCM----LLG--------------LRWQV---ALLIGLGLALSSTAI 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKAL 188
+Q + E+ + T+ G + ILL QDIA +PL+ ++P+L + + + +LK
Sbjct: 131 AMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVA 190
Query: 189 AGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAG 248
L L+ LGG+Y+ R VA + E F A+ L V G LL +++G S LGAFLAG
Sbjct: 191 GALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAG 250
Query: 249 AILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTL 308
+LA + +R +E+DI PF+GLLLGLFF+ G SID L +L LL G + IK
Sbjct: 251 VLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIA 310
Query: 309 IISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMA 368
++ + +G+ ++ +LL QGGEFAFVVF A VL E KLL + V LSMA
Sbjct: 311 MLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMA 370
Query: 369 LTP-LLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLA 427
TP LL + R + + +E+ E V+I GFG+ GQ++ LL L+
Sbjct: 371 ATPLLLVLLDRLEQ----SRTEEAREADEID--EQQPRVIIAGFGRFGQIVGRLL---LS 421
Query: 428 SGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD 487
S G D +P ++ RK G + YGDA+R +L SAG + ++ D
Sbjct: 422 S-------GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474
Query: 488 KKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGF 547
+ +++ V+ ++ FP + I ARA+D+ H + L++AG E E +L+ G +L+
Sbjct: 475 PQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLVLESL 534
Query: 548 G 548
G
Sbjct: 535 G 535
|
Length = 621 |
| >gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = 2e-94
Identities = 190/544 (34%), Positives = 294/544 (54%), Gaps = 44/544 (8%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
+LG+ AGI + LG I ++ ++ SE G++FL+F +GLEL+ ++L L + FG+G
Sbjct: 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVG 91
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
QV+LS L L S AVV G L++SS+A
Sbjct: 92 AAQVLLSAAVLAG-------------LLMLTDF--------SWQAAVVGGIGLAMSSTAM 130
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESV-WPMLVKESLKA 187
LQL+ EKG + G +LL QD+AV+P L ++P+L E W +K +K
Sbjct: 131 ALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW---MKIGMKV 187
Query: 188 LAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLA 247
LA G+L +GG+YLLR +F +A + E F A LL V G++L LG S LG F+A
Sbjct: 188 LAFAGML-IGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFMDALGLSMALGTFIA 246
Query: 248 GAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT 307
G +LAE+ +R ++E I PF+GLLLGLFF++ G ++++ +L+ VL + L+ +K
Sbjct: 247 GVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKG 306
Query: 308 LIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM 367
L++ + GL E ++ +LSQGGEFAFV+FS A+ +L + LL++VV LSM
Sbjct: 307 LVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSM 366
Query: 368 ALTPLL-NEIGRWAADFIDDKFGSEDKVEEMVNYEGSEP-VVIVGFGQMGQVLANLLSAP 425
TPLL I +W A + ++ +E E +P V+IVGFG+ GQV+ LL A
Sbjct: 367 MTTPLLMKLIDKWLA----RRLNGPEEEDEKPWVEDDKPQVIIVGFGRFGQVIGRLLMA- 421
Query: 426 LASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 485
N + + + S V RK G+ + YGDA++ +L +AG +A++I
Sbjct: 422 -------NKM--RITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITC 472
Query: 486 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545
+ + T++ V+ + FP + I ARA+ + +L +AG T E ++L+LG K L
Sbjct: 473 NEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLV 532
Query: 546 GFGV 549
G+
Sbjct: 533 SLGM 536
|
Length = 601 |
| >gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 2e-58
Identities = 141/378 (37%), Positives = 202/378 (53%), Gaps = 31/378 (8%)
Query: 2 IMRILCRSQILGFFFAGIVL---NQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLK 58
+ + L +LG+ AGI+L L II + +++L+E G++FLLF +GLE L RLK
Sbjct: 24 LFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLK 83
Query: 59 ALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIG 118
+ + + G+G+ QV L+ L IL A+ +G
Sbjct: 84 KVGR-SVGLGVAQVGLTAPFLLGLLL------LLGILGLSL------------IAALFLG 124
Query: 119 AALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWP 178
AAL+LSS+A VL++L E G L TR G LG L+ DIA + LL I+P L S SV
Sbjct: 125 AALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGF 184
Query: 179 MLVKESLKALAGLGLLSL-GGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLG 237
+L L A+ L L G+YLL +F VA+ SSE F+ LL V G + L + LG
Sbjct: 185 ILGL--LLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAYLAELLG 242
Query: 238 FSDTLGAFLAGAILAETNFRT-QIEADIRPFR-GLLLGLFFVTTGSSIDIELLFREWPNV 295
S LGAFLAG +L+E+ +R ++E I PF GL + LFF++ G S+D+ +L +
Sbjct: 243 LSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLI 302
Query: 296 LALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLEL 355
L L+A I+ K L +G + + ++ IGLLL QGGEFAFV+ + +
Sbjct: 303 LLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAG----IALGSAIS 358
Query: 356 NKLLIIVVVLSMALTPLL 373
LL VV+LSM TP+L
Sbjct: 359 EALLTAVVILSMITTPIL 376
|
Length = 397 |
| >gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 4e-55
Identities = 120/367 (32%), Positives = 179/367 (48%), Gaps = 25/367 (6%)
Query: 11 ILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68
++G AGI+L LG++ D++VL+E G+ LLF GLEL L L+ K +
Sbjct: 23 VVGLILAGILLGPSGLGLVEPDLDLEVLAELGLPLLLFLAGLELDLRELRKNGKSILLLA 82
Query: 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAF 128
L V++ L L + + EA++ GAALS +S
Sbjct: 83 LLGVLIPFLLGLLLALLGGLGI-------------------PLLEALLFGAALSATSPVV 123
Query: 129 VLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKAL 188
VL +L E+G L TR G+ LG +L D V LL +L L S +L+ L
Sbjct: 124 VLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLGLLLLIFLVVA 183
Query: 189 AGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAG 248
G LL L +LLR + + E V L L +LL + LG S LGAFLAG
Sbjct: 184 LGGLLLGLVFGWLLRLITRF--TSGDRELEVLLVLALALLAALLAELLGLSGILGAFLAG 241
Query: 249 AILAETNFRTQIEADIRPFR-GLLLGLFFVTTGSSIDI-ELLFREWPNVLALLAGLIIIK 306
+L+ F ++ + PF GL L LFFV+ G S+D+ LL VL LL +++ K
Sbjct: 242 LVLSNYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGK 301
Query: 307 TLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLS 366
L + + +GL+L+E++ +G Q G + + ++ +LG++ EL LL+ VV+L+
Sbjct: 302 LLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAIGLQLGLIDRELYTLLVAVVLLT 361
Query: 367 MALTPLL 373
L PLL
Sbjct: 362 TLLKPLL 368
|
Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370 |
| >gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 5e-50
Identities = 116/289 (40%), Positives = 162/289 (56%), Gaps = 31/289 (10%)
Query: 2 IMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKA 59
+ R L +LG+ AG+++ LG+I N+ V L+E+G++ L+F +GLEL L RL
Sbjct: 10 LSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWK 69
Query: 60 LAKFAFGMGLTQVVLST--LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVI 117
L K AFG+G+ QV++ L L AVVI
Sbjct: 70 LRKAAFGVGVLQVLVPGVLLGLLLGHLLGLAL----------------------GAAVVI 107
Query: 118 GAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSES-- 175
G L+LSS+A V+Q+L E+G L T FG LGILL QDIAVVPLL +LP+L + S
Sbjct: 108 GIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHV 167
Query: 176 VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQK 235
+L+ LK LL L G++LLR V + AE R SE F A LL + G++
Sbjct: 168 ALALLL---LKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADL 224
Query: 236 LGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSID 284
LG S LGAFLAG +L+E+ +R ++E+D+ P G+LL LFF++ G S+D
Sbjct: 225 LGLSMALGAFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273 |
| >gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-31
Identities = 109/374 (29%), Positives = 176/374 (47%), Gaps = 30/374 (8%)
Query: 9 SQILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFG 66
S ++G+ AG++ G + + T L+E G++ L+F +GL SL L A+ A
Sbjct: 31 SPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIP 90
Query: 67 MGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSS 126
L Q+ L+TL L S S +V G ALS++S+
Sbjct: 91 GALAQIALATL-----------------LGMGLSSLLGW----SFGTGIVFGLALSVAST 129
Query: 127 AFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLES---QVSESVWPMLVKE 183
+L+ L E+ + T+ G +G L+++D+A+V LV+LP L Q +LV
Sbjct: 130 VVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDL 189
Query: 184 SL---KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL-GFS 239
+ K A + ++ + G+ L+ + E VA S E F L G + +L G S
Sbjct: 190 GITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGAAELFGVS 249
Query: 240 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALL 299
LGAF AG +LAE+ + D P R LFFV+ G D +L ++ VLA L
Sbjct: 250 FALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATL 309
Query: 300 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLL 359
++ K++ I G ++ ++ I L+Q GEF+F++ L +L +LP L+
Sbjct: 310 LIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLV 369
Query: 360 IIVVVLSMALTPLL 373
+ +LS+ L PLL
Sbjct: 370 LAGAILSILLNPLL 383
|
Length = 408 |
| >gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-24
Identities = 135/531 (25%), Positives = 243/531 (45%), Gaps = 58/531 (10%)
Query: 1 MIMRILCRSQILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLK 58
M+ L S ++G+ AG++ G + + L+E G++ L+F +GL SL L
Sbjct: 23 MLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLM 82
Query: 59 ALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIG 118
A+ A + Q+ ++TL G + +L + S+ +V G
Sbjct: 83 AVKSIAIPGAIAQIAVATLL---------GMALSAVLGW------------SLMTGIVFG 121
Query: 119 AALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILP----VLESQ--- 171
LS +S+ +L+ L E+ + ++ G +G L+++D+ +V LV+LP ++E
Sbjct: 122 LCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVG 181
Query: 172 VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVA-GTS 230
+ + + K +A + ++ L G+ L+ + A S E F L +L +A G +
Sbjct: 182 FATLAVDLGITIG-KVIAFIAIMMLVGRRLVPWILARSAATGSRELF-TLSVLALALGIA 239
Query: 231 LLTQKL-GFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLF 289
+L S LGAF AG +L E+ + D P R LFFV+ G D +L
Sbjct: 240 FGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILI 299
Query: 290 REWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLG 349
++ VLA LA ++ K+L + G + + ++ I L+Q GEFAF++ L L
Sbjct: 300 QQPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALN 359
Query: 350 VLPLELNKLLIIVVVLSMALTPLL-NEIGRWAA--DFIDDKFGSEDKVEEMVNYEGSEPV 406
+LP L++ +LS+ L P+L + R+ A + ++++ +EE + E PV
Sbjct: 360 LLPQAGQNLVLAGAILSIMLNPVLFTLLERYLAKTETLEEQT-----LEEAIEEEKQIPV 414
Query: 407 ------VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPIL 460
++VG+G++G +L L A G P V + + + V E R+ G +
Sbjct: 415 DICNHALLVGYGRVGSLLGEKLLA----------AGIPLVVIETSRTRVDELRERGIRAV 464
Query: 461 YGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 511
G+A+ ++ A + + +++ + E V R P I I ARA
Sbjct: 465 LGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515
|
Length = 558 |
| >gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 3e-20
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
++I+G+G++G+ LA L G V D +P V+E R+ G P++ GDA+
Sbjct: 1 IIIIGYGRVGRSLAEELREG----------GPDVVVIDKDPERVEELREEGVPVVVGDAT 50
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 525
VL AGI AV+ D + I V R P + I ARA D H L++ GA
Sbjct: 51 DEEVLEEAGIEEADAVVAATGDDEANILIVLLARELNPKLKIIARANDPEHAELLRRLGA 110
Query: 526 TDAI 529
+ I
Sbjct: 111 DEVI 114
|
This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116 |
| >gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 2e-14
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
V+IVGFG++GQ++A L A G P V D + V+ R+LG ++ GDA+
Sbjct: 24 VIIVGFGRVGQIVARALLA----------SGIPVVVIDSDEDRVELLRELGLLVVLGDAT 73
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM-HLLDLKKAG 524
R VL +AGI +AV++ +D + V R P + I ARA+D+ + L G
Sbjct: 74 REEVLEAAGIERARAVIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVG 133
Query: 525 ATDAILENAETSLQLGSKLLKGFGVMS 551
A + + E++L L L G G S
Sbjct: 134 ADEVVPPTFESALLLARAALVGLGGDS 160
|
Length = 212 |
| >gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 4e-10
Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 36/369 (9%)
Query: 28 RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPN 87
R++ ++ ++ G+L+ LF +G+E+ ++ ++ K A + + + L AF
Sbjct: 99 RSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAF----- 153
Query: 88 GAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSAT 147
F+FH S V+ + + +G ALS+++ + ++LAE + T G
Sbjct: 154 --------SFIFHQVSRNVHQGTF--ILFLGVALSVTAFPVLARILAEIKLINTELGRIA 203
Query: 148 LGILLLQDIAVVPLLVI---LPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRR 204
+ L+ D+ LL + L +S S+W +L+ L ++ G +++RR
Sbjct: 204 MSAALVNDMCAWILLALAIALAENDSTSLASLW-VLLSSVAFVLFCFYVVRPGIWWIIRR 262
Query: 205 VFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADI 264
E E SE ++ L L V + +T +G GAF+ G ++ + +
Sbjct: 263 TPE--GET-FSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKL 319
Query: 265 RPF-RGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLI-------IIKTLIISAIGPR 316
F GLLL LFF +G ++ + + P LL +I I+ T+II+
Sbjct: 320 EDFVSGLLLPLFFAISGLKTNVTKI--QGPATWGLLVLVIIMASAGKIMGTIIIAFF--- 374
Query: 317 VGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMAL-TPLLNE 375
+ +E + +G L++ G +V ++ VL E ++++V V AL TP++
Sbjct: 375 YTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTV 434
Query: 376 IGRWAADFI 384
+ R A +
Sbjct: 435 VYRPARRLV 443
|
Length = 832 |
| >gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 21/215 (9%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE--SRKLGFPILYGD 463
++I+G G++G+ +A LS +G+ V V D + V+E + +L ++ GD
Sbjct: 3 IIIIGAGRVGRSVARELS------EEGHNV----VLIDRDEERVEEFLADELDTHVVIGD 52
Query: 464 ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA 523
A+ VL AGI AV+ + + F + ARA++ H L+K
Sbjct: 53 ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKL 112
Query: 524 GATDAILENAETSLQLGSKLLKG--FGVMSDDVTFLRQLVRNSMEIQA--QEVLSQKDDQ 579
GA I +L + D + +E + L+ K +
Sbjct: 113 GADVIIS----PEKLAAKRLARLIVTPGALDVLELAGGDA-EVIEEKVAEDSPLAGKTLR 167
Query: 580 EFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSRED 614
E D+ P V V I + D L D
Sbjct: 168 ELDLRLPYDVNVIAIKRGGNELIIPRGDTTLEAGD 202
|
Length = 225 |
| >gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 82/379 (21%), Positives = 132/379 (34%), Gaps = 50/379 (13%)
Query: 11 ILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLK----ALAKFAFG 66
+LG LN + L D ++ + LLF GLEL L L+ ++ A
Sbjct: 38 LLGLLGGPPGLNLISPDLEL-DPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALP 96
Query: 67 MGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSS 126
+ L + L + A ++GA LS +
Sbjct: 97 LVLITALGIGLLAHWLLPGIP-----------------------LAAAFLLGAILS-PTD 132
Query: 127 AFVLQLLAEKGELPTRFGSATLGILLLQD-IAVVPLLVILPVLESQVSESVWPMLVKESL 185
+ + ++ +P R + G LL D + +V V L L + S+ L+ +
Sbjct: 133 PVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLI 192
Query: 186 KALAGLG---LLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTL 242
+AL G+ LL LLRR+ + E + LL LL + LG S L
Sbjct: 193 EALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLT--LLLAFAAYLLAEALGVSGIL 250
Query: 243 GAFLAGAILAETNFRTQIEADIRPFRG--------LLLGLFFVTTGSSIDIELLFREWPN 294
+AG +L E A R LL GL FV G+ + + LL
Sbjct: 251 AVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLL 310
Query: 295 VLALLAGLIIIKTLI---ISAIGPRVGLTLQESVRIGLLLSQGGEF----AFVVFSLANR 347
L + +++ + +S G + L R L LS G + +
Sbjct: 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIPLE 370
Query: 348 LGVLPLELNKLLIIVVVLS 366
L EL ++ +V+L
Sbjct: 371 LPGPARELILFIVFLVILF 389
|
Length = 429 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 663 | |||
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 100.0 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 100.0 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 100.0 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 100.0 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 100.0 | |
| COG4651 | 408 | RosB Kef-type K+ transport system, predicted NAD-b | 100.0 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 100.0 | |
| TIGR00932 | 273 | 2a37 transporter, monovalent cation:proton antipor | 100.0 | |
| PF00999 | 380 | Na_H_Exchanger: Sodium/hydrogen exchanger family; | 100.0 | |
| KOG1650 | 769 | consensus Predicted K+/H+-antiporter [Inorganic io | 99.97 | |
| TIGR00844 | 810 | c_cpa1 na(+)/h(+) antiporter. This model is specif | 99.97 | |
| TIGR00831 | 525 | a_cpa1 Na+/H+ antiporter, bacterial form. This mod | 99.95 | |
| COG0025 | 429 | NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg | 99.94 | |
| COG3263 | 574 | NhaP-type Na+/H+ and K+/H+ antiporters with a uniq | 99.93 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 99.92 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 99.92 | |
| TIGR00840 | 559 | b_cpa1 sodium/hydrogen exchanger 3. This model is | 99.9 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 99.88 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 99.84 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 99.78 | |
| PRK14853 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.7 | |
| KOG4505 | 467 | consensus Na+/H+ antiporter [Inorganic ion transpo | 99.63 | |
| KOG1965 | 575 | consensus Sodium/hydrogen exchanger protein [Inorg | 99.6 | |
| COG1226 | 212 | Kch Kef-type K+ transport systems, predicted NAD-b | 99.55 | |
| TIGR00773 | 373 | NhaA Na+/H+ antiporter NhaA. These proteins are me | 99.46 | |
| PRK14856 | 438 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.27 | |
| PRK14854 | 383 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.21 | |
| PRK09561 | 388 | nhaA pH-dependent sodium/proton antiporter; Review | 99.12 | |
| PRK09560 | 389 | nhaA pH-dependent sodium/proton antiporter; Review | 99.11 | |
| PRK14855 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.11 | |
| PF06965 | 378 | Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP | 98.89 | |
| COG3004 | 390 | NhaA Na+/H+ antiporter [Inorganic ion transport an | 98.82 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 98.35 | |
| KOG1966 | 670 | consensus Sodium/hydrogen exchanger protein [Inorg | 98.3 | |
| PF05684 | 378 | DUF819: Protein of unknown function (DUF819); Inte | 98.22 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.11 | |
| PRK12460 | 312 | 2-keto-3-deoxygluconate permease; Provisional | 98.02 | |
| PF03812 | 314 | KdgT: 2-keto-3-deoxygluconate permease; InterPro: | 97.97 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.88 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.86 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.69 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.42 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.4 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.33 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.3 | |
| TIGR00793 | 314 | kdgT 2-keto-3-deoxygluconate transporter. This fam | 97.29 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.19 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.16 | |
| COG3400 | 471 | Uncharacterized protein conserved in bacteria [Fun | 97.11 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 97.04 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.98 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.97 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.96 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.95 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.87 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.77 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.74 | |
| TIGR00932 | 273 | 2a37 transporter, monovalent cation:proton antipor | 96.73 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 96.68 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.68 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.65 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.63 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.62 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.6 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.58 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.58 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.54 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.52 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.5 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.49 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.47 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.45 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 96.43 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.43 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 96.41 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.37 | |
| PRK05274 | 326 | 2-keto-3-deoxygluconate permease; Provisional | 96.36 | |
| PF03956 | 191 | DUF340: Membrane protein of unknown function (DUF3 | 96.33 | |
| COG0385 | 319 | Predicted Na+-dependent transporter [General funct | 96.32 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 96.31 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 96.31 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.26 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.23 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.22 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.2 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 96.19 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 96.13 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.13 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 96.12 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.11 | |
| COG0786 | 404 | GltS Na+/glutamate symporter [Amino acid transport | 96.08 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.08 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.07 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.06 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 95.99 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 95.99 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 95.96 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.92 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 95.91 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.88 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.85 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.84 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.81 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 95.79 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.78 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.77 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 95.75 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.73 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 95.69 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 95.68 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.65 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 95.61 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.56 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 95.55 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 95.54 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.52 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 95.46 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 95.44 | |
| PF01758 | 187 | SBF: Sodium Bile acid symporter family; InterPro: | 95.39 | |
| PF06241 | 206 | DUF1012: Protein of unknown function (DUF1012); In | 95.38 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 95.38 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 95.38 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 95.38 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.35 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.34 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.33 | |
| PF03616 | 368 | Glt_symporter: Sodium/glutamate symporter; InterPr | 95.31 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.29 | |
| TIGR00210 | 398 | gltS sodium--glutamate symport carrier (gltS). | 95.2 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 95.18 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 95.18 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 95.15 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.11 | |
| COG2855 | 334 | Predicted membrane protein [Function unknown] | 95.06 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 95.04 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.04 | |
| PRK03818 | 552 | putative transporter; Validated | 95.02 | |
| PLN02712 | 667 | arogenate dehydrogenase | 95.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 94.97 | |
| TIGR00844 | 810 | c_cpa1 na(+)/h(+) antiporter. This model is specif | 94.95 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.93 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.91 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 94.9 | |
| TIGR00831 | 525 | a_cpa1 Na+/H+ antiporter, bacterial form. This mod | 94.88 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 94.87 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 94.85 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.85 | |
| COG2855 | 334 | Predicted membrane protein [Function unknown] | 94.84 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 94.82 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.79 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.77 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 94.75 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 94.72 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.67 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 94.65 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 94.63 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.6 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.59 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 94.58 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 94.55 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.54 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.51 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 94.49 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.49 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 94.48 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 94.48 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.47 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.44 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 94.4 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 94.37 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 94.36 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 94.36 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 94.36 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.35 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.33 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 94.25 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.24 | |
| TIGR01625 | 154 | YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati | 94.23 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.13 | |
| PF13593 | 313 | DUF4137: SBF-like CPA transporter family (DUF4137) | 94.12 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.1 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 94.06 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.05 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 93.99 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 93.99 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 93.97 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.96 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 93.94 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 93.94 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 93.94 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.89 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.89 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 93.86 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 93.85 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 93.84 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 93.78 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 93.77 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.74 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 93.71 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 93.7 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 93.58 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 93.57 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 93.56 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 93.53 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 93.52 | |
| PLN00106 | 323 | malate dehydrogenase | 93.52 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 93.42 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 93.38 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 93.34 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.33 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 93.31 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 93.29 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 93.27 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 93.24 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.21 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.19 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 93.18 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 93.16 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 93.07 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 93.06 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.02 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 93.02 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 92.98 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.97 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 92.91 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 92.91 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 92.89 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.87 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 92.87 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 92.86 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 92.86 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 92.84 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 92.82 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.8 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 92.77 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 92.76 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 92.76 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 92.73 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 92.73 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 92.73 | |
| PLN02602 | 350 | lactate dehydrogenase | 92.73 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 92.73 | |
| PF06826 | 169 | Asp-Al_Ex: Predicted Permease Membrane Region; Int | 92.7 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 92.69 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 92.69 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.67 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 92.62 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 92.58 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 92.58 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 92.51 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 92.51 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 92.49 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 92.48 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 92.47 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 92.46 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 92.46 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.45 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 92.44 | |
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp | 92.44 | |
| TIGR03802 | 562 | Asp_Ala_antiprt aspartate-alanine antiporter. All | 92.42 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 92.4 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 92.38 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 92.37 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 92.32 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 92.31 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 92.25 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 92.25 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 92.25 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 92.24 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 92.24 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 92.23 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 92.22 | |
| TIGR00832 | 328 | acr3 arsenical-resistance protein. The first prote | 92.18 | |
| PRK08643 | 256 | acetoin reductase; Validated | 92.17 | |
| PRK03818 | 552 | putative transporter; Validated | 92.14 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 92.14 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.13 | |
| TIGR03082 | 156 | Gneg_AbrB_dup membrane protein AbrB duplication. T | 92.13 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 92.12 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 92.11 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 92.1 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 92.06 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 92.04 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 92.04 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 92.01 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 91.99 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 91.99 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 91.99 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 91.97 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 91.96 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 91.95 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 91.93 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 91.9 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 91.85 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 91.83 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.81 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 91.8 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 91.75 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 91.73 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 91.73 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 91.72 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.72 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.7 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 91.66 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 91.65 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 91.65 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 91.62 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 91.55 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 91.54 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 91.5 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 91.49 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 91.45 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 91.43 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 91.4 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 91.38 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 91.36 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 91.35 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.34 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 91.34 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 91.33 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 91.33 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.32 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 91.31 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 91.31 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 91.31 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 91.28 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 91.27 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 91.22 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 91.21 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 91.21 | |
| PRK05717 | 255 | oxidoreductase; Validated | 91.18 | |
| PLN02477 | 410 | glutamate dehydrogenase | 91.18 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 91.1 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 91.09 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 91.09 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 91.07 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 91.07 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 91.01 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 91.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 90.99 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 90.91 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 90.9 | |
| COG0025 | 429 | NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg | 90.9 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 90.86 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 90.79 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 90.77 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 90.69 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.69 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 90.68 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 90.64 | |
| PF03616 | 368 | Glt_symporter: Sodium/glutamate symporter; InterPr | 90.63 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 90.61 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.56 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 90.54 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 90.5 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 90.37 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 90.36 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 90.33 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.33 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 90.31 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 90.29 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 90.26 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 90.2 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 90.15 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 90.11 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 90.09 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 90.08 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 90.04 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 90.0 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 89.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 89.94 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 89.92 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 89.91 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 89.9 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 89.89 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 89.87 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 89.86 | |
| PLN02928 | 347 | oxidoreductase family protein | 89.85 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 89.84 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 89.83 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 89.82 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 89.77 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 89.76 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.76 | |
| COG0786 | 404 | GltS Na+/glutamate symporter [Amino acid transport | 89.74 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 89.74 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 89.73 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 89.7 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 89.67 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 89.58 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 89.53 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 89.5 | |
| PRK10124 | 463 | putative UDP-glucose lipid carrier transferase; Pr | 89.49 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 89.48 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 89.47 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 89.46 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.36 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 89.33 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 89.27 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.25 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 89.23 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 89.23 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 89.2 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 89.19 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 89.18 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 89.17 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.16 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 89.15 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 89.14 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.14 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 89.13 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 89.08 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 89.06 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 89.01 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 89.0 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 89.0 | |
| PLN02366 | 308 | spermidine synthase | 88.97 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.96 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 88.95 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 88.88 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 88.87 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 88.87 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 88.85 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 88.83 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 88.79 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 88.78 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 88.77 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 88.73 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 88.72 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 88.71 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 88.69 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 88.68 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 88.66 | |
| PF00999 | 380 | Na_H_Exchanger: Sodium/hydrogen exchanger family; | 88.65 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 88.64 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 88.62 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 88.59 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 88.59 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 88.56 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 88.56 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 88.55 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 88.54 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 88.49 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.49 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 88.48 | |
| COG0679 | 311 | Predicted permeases [General function prediction o | 88.45 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 88.41 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 88.37 | |
| PRK04972 | 558 | putative transporter; Provisional | 88.34 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 88.31 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 88.28 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 88.27 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.26 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 88.25 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 88.2 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 88.19 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 88.16 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 88.1 | |
| PRK08223 | 287 | hypothetical protein; Validated | 88.07 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 88.06 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 88.06 | |
| PF05145 | 318 | AmoA: Putative ammonia monooxygenase; InterPro: IP | 88.03 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 87.98 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 87.97 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 87.95 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 87.94 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 87.94 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.92 | |
| TIGR00946 | 321 | 2a69 he Auxin Efflux Carrier (AEC) Family. | 87.82 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.8 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.8 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 87.76 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 87.75 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 87.64 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 87.62 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 87.62 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 87.57 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.56 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 87.55 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 87.48 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 87.47 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 87.46 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 87.45 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 87.44 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 87.4 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 87.37 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 87.34 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 87.34 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 87.31 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 87.31 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 87.3 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 87.29 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 87.28 | |
| TIGR03022 | 456 | WbaP_sugtrans Undecaprenyl-phosphate galactose pho | 87.23 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 87.22 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 87.18 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 87.15 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.14 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 87.11 |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=690.97 Aligned_cols=536 Identities=33% Similarity=0.548 Sum_probs=473.9
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
+++||+|+|+++|||++|+++|| +|++++.+.++.++|+|++++||.+|+|+|++.+|+.+|+++..+..++++++++
T Consensus 22 ~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~ 101 (621)
T PRK03562 22 PIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGL 101 (621)
T ss_pred HHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999 5778777889999999999999999999999999999999999999999999876
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
++.+ .+++| ++|..++++|.+++.||+++++++++|++.+++++||.+++++++||+++
T Consensus 102 ~~~~-------------~~~~g--------~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~ 160 (621)
T PRK03562 102 LGLF-------------CMLLG--------LRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAA 160 (621)
T ss_pred HHHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence 6543 35566 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCC
Q 006034 159 VPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGF 238 (663)
Q Consensus 159 i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~ 238 (663)
++++++++.+...+............++.++++++++++++|+.+++++|+.+.+.+|.+...+++++++++++++.+|+
T Consensus 161 i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~~~Gl 240 (621)
T PRK03562 161 IPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLMEEVGL 240 (621)
T ss_pred HHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhCc
Confidence 99998887665421111111112233344444455566688999999999988888899888888888899999999999
Q ss_pred cHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006034 239 SDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVG 318 (663)
Q Consensus 239 s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~g 318 (663)
|+++|||+||+++++++++++++++++||+++|+|+||+++|+++|+..+..+|+.++.++++.+++|++++++.++++|
T Consensus 241 s~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g 320 (621)
T PRK03562 241 SMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLG 320 (621)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988777766666677788999999999999999
Q ss_pred CChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHhhhhhhcCCcchhhhhc
Q 006034 319 LTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMV 398 (663)
Q Consensus 319 ~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~~l~~r~~~~~~~~~~~ 398 (663)
+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.+++++++|++++|++.+++++.... +..+... ++..
T Consensus 321 ~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~---~~~~~~~-~~~~ 396 (621)
T PRK03562 321 VPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQS---RTEEARE-ADEI 396 (621)
T ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---Hhhhccc-cccc
Confidence 99999999999999999999999999999999999999999999999999999998876554321 1111111 1111
Q ss_pred ccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 399 NYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 399 ~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
++.++|++|||||++|+.+++.|+ ++|+++++||.|+++++.+++.|+++++||++|+++|+++|+++|
T Consensus 397 -~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 397 -DEQQPRVIIAGFGRFGQIVGRLLL----------SSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred -ccccCcEEEEecChHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcC
Confidence 234789999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLR 558 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~ 558 (663)
|.++++++||+.|..++..+|+.+|++++++|++|+++.+.++++|||+++.+..+.+.+++++++..+|.++..++...
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~L~~lg~~~~~~~~~~ 545 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLVLESLGLGPYEARERA 545 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccchhhh
Q 006034 559 QLVRNSMEIQAQEV 572 (663)
Q Consensus 559 ~~~~~~~~~~~~e~ 572 (663)
+.+|+.++....+.
T Consensus 546 ~~~r~~~~~~~~~~ 559 (621)
T PRK03562 546 DRFRRHNLQMVEEM 559 (621)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988775555443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=680.89 Aligned_cols=534 Identities=34% Similarity=0.544 Sum_probs=470.7
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
++++|+|+|+++||+++|+++|| +|++++.+.++.++++|++++||.+|+|+|++.+|+.+|+++.++..++++|+++
T Consensus 22 ~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~ 101 (601)
T PRK03659 22 PLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAV 101 (601)
T ss_pred HHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999 5788777889999999999999999999999999999999999999999999876
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
++.+ .+++| ++|..++++|++++.||+++++++++|++..+++.||++++++++||+.+
T Consensus 102 ~~~~-------------~~~~g--------~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~ 160 (601)
T PRK03659 102 LAGL-------------LMLTD--------FSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV 160 (601)
T ss_pred HHHH-------------HHHHc--------cCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHH
Confidence 5543 23456 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhC
Q 006034 159 VPLLVILPVLESQVSES-VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLG 237 (663)
Q Consensus 159 i~~l~i~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G 237 (663)
++++++++.+...+... .|.. ....+..++++.++++|+.+++++++.+.+.+|.++..+++++++++++++.+|
T Consensus 161 i~ll~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~l~~~~G 236 (601)
T PRK03659 161 IPALALVPLLAGSADEHFDWMK----IGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFMDALG 236 (601)
T ss_pred HHHHHHHHHHhcCCCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 99998887665432221 1221 122223334445567889999999998888889988888888888999999999
Q ss_pred CcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006034 238 FSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRV 317 (663)
Q Consensus 238 ~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~ 317 (663)
+|+++|||++|+++++++++++++++++|++++|.|+||+++|+++|+..+..+|..++.++++.+++|++++++.++++
T Consensus 237 ls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~ 316 (601)
T PRK03659 237 LSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLY 316 (601)
T ss_pred ccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888877777777788899999999999999
Q ss_pred CCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHH-HhhhhhhcCCcchhhh
Q 006034 318 GLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWA-ADFIDDKFGSEDKVEE 396 (663)
Q Consensus 318 g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~-~~~l~~r~~~~~~~~~ 396 (663)
|+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.++.++++|++++|++.+.+.+. .++..+....+. ++
T Consensus 317 g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~~~~~~~~~~--~~ 394 (601)
T PRK03659 317 GLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARRLNGPEEEDE--KP 394 (601)
T ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc--cc
Confidence 999999999999999999999999999999999999999999999999999999999876553 222211111000 11
Q ss_pred hcccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 397 MVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 397 ~~~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
..++.++|++|||||++|+.+++.|+ ++|+++++||.|+++++.+++.|.++++||++|+++|+++|++
T Consensus 395 -~~~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 395 -WVEDDKPQVIIVGFGRFGQVIGRLLM----------ANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAE 463 (601)
T ss_pred -ccccccCCEEEecCchHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCc
Confidence 11245789999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHH
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~ 556 (663)
+||.++++++||+.|..++.++|+.+|+.+|++|++|++|.+.++++|+|+|+.++.+++.+++++++..+|.|++.+..
T Consensus 464 ~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~L~~lg~~~~~~~~ 543 (601)
T PRK03659 464 KAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQR 543 (601)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcccccchhhh
Q 006034 557 LRQLVRNSMEIQAQEV 572 (663)
Q Consensus 557 ~~~~~~~~~~~~~~e~ 572 (663)
..+..|+.++....+.
T Consensus 544 ~~~~~r~~~~~~~~~~ 559 (601)
T PRK03659 544 AQQHFRRLDMRMLREL 559 (601)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887765555443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=639.04 Aligned_cols=513 Identities=25% Similarity=0.352 Sum_probs=438.4
Q ss_pred cccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
++||+|+|+++|||++|+++|| +|++++.+.++.++++|+++++|.+|+|+|++.+|+.++..+..+..+++++++.+
T Consensus 24 l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (558)
T PRK10669 24 LANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLG 103 (558)
T ss_pred HHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999 46777778899999999999999999999999999998888878888888877655
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVV 159 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i 159 (663)
+++ .+.+| +++..++++|++++.||+++++++++|++..+++.||++++.+++||++++
T Consensus 104 ~~~-------------~~~~~--------~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i 162 (558)
T PRK10669 104 MAL-------------SAVLG--------WSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMV 162 (558)
T ss_pred HHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHH
Confidence 443 34566 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc---CCCchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH-H
Q 006034 160 PLLVILPVLESQ---VSESVW---PMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSL-L 232 (663)
Q Consensus 160 ~~l~i~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~-l 232 (663)
+++.++..+... +..+.. ..+...+...++++++..++++++.+|+.++..+.+.+|.+...++.+++++++ .
T Consensus 163 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~ 242 (558)
T PRK10669 163 LTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGA 242 (558)
T ss_pred HHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 888877655421 111111 111122333444444455667778888888877666778877777777776665 4
Q ss_pred HHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 233 ~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
++.+|+|+++|||++|+++++.++++++.+...+++++|.|+||+++|+++|+..+.+++..++.++++.+++|+++++.
T Consensus 243 ~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~ 322 (558)
T PRK10669 243 VELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF 322 (558)
T ss_pred HHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988889998888899999999999999999999998777666666677788999999999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHhhhhhhcCCcc
Q 006034 313 IGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSED 392 (663)
Q Consensus 313 ~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~~l~~r~~~~~ 392 (663)
.++++|+++|+++.+|+.|+|+|+++++++..+++.|+++++.|++++.++++|++++|++.++..+...+..+...+..
T Consensus 323 ~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~~~~~~~~~~~~ 402 (558)
T PRK10669 323 LVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYLAKTETLEEQTL 402 (558)
T ss_pred HHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998876665544332111100
Q ss_pred -h---hhhhcccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH
Q 006034 393 -K---VEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA 468 (663)
Q Consensus 393 -~---~~~~~~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~ 468 (663)
+ .++..+++.++|++|||+|++|+.+++.|+ ++|++|++||.|+++++++++++.++++||++|++
T Consensus 403 ~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~----------~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~ 472 (558)
T PRK10669 403 EEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLL----------AAGIPLVVIETSRTRVDELRERGIRAVLGNAANEE 472 (558)
T ss_pred ccccccccccccccCCCEEEECCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHH
Confidence 0 112233456899999999999999999998 78999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+|+++|+++||.++++++||++|..++.++|+.+|+.++++|++|+++.+.++++|+|+|++|+++.++++++.+.+
T Consensus 473 ~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 473 IMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLET 549 (558)
T ss_pred HHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888887766
|
|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=392.13 Aligned_cols=357 Identities=38% Similarity=0.549 Sum_probs=295.6
Q ss_pred CcccccCchhHHHHHHHHHHhccC--C-CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhH-HHHHHHHHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQL--G-IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF-AFGMGLTQVVLST 76 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp~--g-lv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~-~~~~~~~~~~~~~ 76 (663)
++++|+|+|+++||+++|+++||. + ..++++.++.++|+|++++||.+|+|+|++++|+.+|+ ....+..++..++
T Consensus 23 ~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~ 102 (397)
T COG0475 23 PLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPF 102 (397)
T ss_pred HHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHH
Confidence 468999999999999999999993 3 34567889999999999999999999999999999999 5655555555554
Q ss_pred HHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 006034 77 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDI 156 (663)
Q Consensus 77 ~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di 156 (663)
+++.... .. .+| +++..++++|.+++.||+++++++++|+|..+++.|+.+++++++||+
T Consensus 103 ~l~~~~~-----------~~-~~g--------~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di 162 (397)
T COG0475 103 LLGLLLL-----------LG-ILG--------LSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDI 162 (397)
T ss_pred HHHHHHH-----------HH-Hhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4433220 01 355 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 157 AVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 157 ~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
.++++++++..+..+++.+.... .........+.++....++|+.++++++..+.+.+|.++..++.++++.++++|.+
T Consensus 163 ~~i~lLai~~~l~~~g~~~~~~~-~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~~a~l~e~~ 241 (397)
T COG0475 163 AAILLLAIVPALAGGGSGSVGFI-LGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAYLAELL 241 (397)
T ss_pred HHHHHHHHHHHHccCCCccHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988876544333221 12233344444444455789999999999998899999999999999999999999
Q ss_pred CCcHHHHHHHhhhhccCCchh-hHHHhhhhchhh-hhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAETNFR-TQIEADIRPFRG-LLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIG 314 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~~~~-~~i~~~~~~~~~-~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~ 314 (663)
|+|+++|||+||+++++++++ ++++++++|+++ +|+|+||+++|+++|++.+.+++..++.++.+.++.|.+++++.+
T Consensus 242 gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~ 321 (397)
T COG0475 242 GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAA 321 (397)
T ss_pred ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 799999999976 999999999999999999998888777888889999999999999
Q ss_pred hhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHh
Q 006034 315 PRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAAD 382 (663)
Q Consensus 315 ~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~ 382 (663)
+..|.+.+++...|+.+.++||++++.+..+.+ +.++++.+...+.+. ++.+|+.....++..+
T Consensus 322 ~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~s---mi~t~i~~~~~~~~~~ 385 (397)
T COG0475 322 RLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILS---MITTPILPLLTPILLK 385 (397)
T ss_pred HHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876 455666555554444 4444444443444333
|
|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=423.57 Aligned_cols=363 Identities=21% Similarity=0.362 Sum_probs=292.2
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCcCC----------chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGIIRN----------LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv~~----------~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~ 68 (663)
+++||+|+|.++|||++|+++|| +|.++. .+.++.++++|++++||.+|+|+|++.+|+.+|+++.++
T Consensus 60 ~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia 139 (832)
T PLN03159 60 FILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIA 139 (832)
T ss_pred HHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHH
Confidence 46899999999999999999999 465431 246899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHH
Q 006034 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATL 148 (663)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l 148 (663)
+.++++|++++++++ ++++.... .......++++|++++.||+++++++|+|+|+++++.|++++
T Consensus 140 ~~~~ilpf~lg~~~~-------------~~l~~~~~--~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaL 204 (832)
T PLN03159 140 IAGMALPFCIGLAFS-------------FIFHQVSR--NVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAM 204 (832)
T ss_pred HHHHHHHHHHHHHHH-------------HHHhhccc--ccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHH
Confidence 999999998766542 12221100 001234568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHH
Q 006034 149 GILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA-----RSSEAFVALCL 223 (663)
Q Consensus 149 ~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~e~~~~~~l 223 (663)
+.++++|++++++++++..+...+... ...+ +.++..++++++ ..++.++++.|+.+. ..++.++.+++
T Consensus 205 saavv~Dl~~~ilLav~~~l~~~~~~~-~~~l-~~~l~~~~f~~~----~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il 278 (832)
T PLN03159 205 SAALVNDMCAWILLALAIALAENDSTS-LASL-WVLLSSVAFVLF----CFYVVRPGIWWIIRRTPEGETFSEFYICLIL 278 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-hhHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHhCcCCCCcccchhHHHH
Confidence 999999999999998876654432211 1111 122222222222 334444555554432 13466667777
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhch-hhhhHHHHHHHhccccChhHHhhh--HHHHHHHHH
Q 006034 224 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPF-RGLLLGLFFVTTGSSIDIELLFRE--WPNVLALLA 300 (663)
Q Consensus 224 ~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~-~~~~~plFFv~vG~~l~~~~l~~~--~~~~l~~~~ 300 (663)
+++++++++++.+|+|+++|||++|+++++.++++.+.++++++ +++|+|+||+++|+++|+..+... |..++.+++
T Consensus 279 ~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv 358 (832)
T PLN03159 279 TGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVII 358 (832)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHH
Confidence 77788899999999999999999999999988889999999999 899999999999999999887543 444455566
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHH-HHHHhhhHHHHHHhHH
Q 006034 301 GLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVV-VLSMALTPLLNEIGRW 379 (663)
Q Consensus 301 ~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~v-vlt~ii~pi~~~~~~~ 379 (663)
+.+++|++++++.++++|+|+++++.+|++|++||+++++++.++.+.|+++++.|+++++++ ++|++++|++.+++++
T Consensus 359 ~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p 438 (832)
T PLN03159 359 MASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRP 438 (832)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCH
Confidence 778899999999999999999999999999999999999999999999999999999988776 4699999999988887
Q ss_pred HHhhh
Q 006034 380 AADFI 384 (663)
Q Consensus 380 ~~~~l 384 (663)
..++.
T Consensus 439 ~rk~~ 443 (832)
T PLN03159 439 ARRLV 443 (832)
T ss_pred Hhhhc
Confidence 65543
|
|
| >COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=340.52 Aligned_cols=363 Identities=29% Similarity=0.422 Sum_probs=317.0
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
+++|+|+|+.+||+++|+++||+ |++.++..-..++|+|++++||.+|++++++++...+..+.+.++.|+.+.....
T Consensus 24 lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg 103 (408)
T COG4651 24 LANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLG 103 (408)
T ss_pred HHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHH
Confidence 67899999999999999999995 8887777778999999999999999999999998777777777777776665544
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVV 159 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i 159 (663)
..+ ....| |++...+++|.++|.+|+.+..+.++|+++.+++.||+++|..+++|++.+
T Consensus 104 ~gL-------------~~~lg--------ws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mV 162 (408)
T COG4651 104 MGL-------------SSLLG--------WSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMV 162 (408)
T ss_pred hHH-------------HHHcC--------CCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHH
Confidence 433 45666 688899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC--C----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH-H
Q 006034 160 PLLVILPVLESQV--S----ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSL-L 232 (663)
Q Consensus 160 ~~l~i~~~~~~~~--~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~-l 232 (663)
+.+...+.+++.- . ......+.....+...++.+..++++.+.||+++++....++|.+...++.++++.++ .
T Consensus 163 l~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~Ga 242 (408)
T COG4651 163 LALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGA 242 (408)
T ss_pred HHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhcc
Confidence 9998888776531 1 1122333445557777888888889999999999999999999999888888887665 7
Q ss_pred HHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 233 ~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
++.+|+|..+|||.+||++++++.+|+..+..-|+++.|..+||+++||..|+..+.+++..++..++..+.+|-+..+.
T Consensus 243 ~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~aaf~ 322 (408)
T COG4651 243 AELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSVAAFF 322 (408)
T ss_pred ceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999887666777778888999999999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHhhhh
Q 006034 313 IGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFID 385 (663)
Q Consensus 313 ~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~~l~ 385 (663)
..+.+|.|.|+++.++..++|.|||+++++..+.+.+++++.--..++...+++++..|+.+...++..++.+
T Consensus 323 ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~~~e 395 (408)
T COG4651 323 IVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQRSAE 395 (408)
T ss_pred HHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999777778888889999999999988777655444
|
|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=345.54 Aligned_cols=351 Identities=21% Similarity=0.199 Sum_probs=279.2
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCc--CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GII--RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv--~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
+++|+++|.+++|+++|+++||. |.+ ++.+..+.++++++++++|.+|+|+|++.+|+.+++++.+++.++++|++
T Consensus 24 l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~ 103 (562)
T PRK05326 24 LSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAG 103 (562)
T ss_pred HHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999995 433 34567899999999999999999999999999999999999999999987
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDI 156 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~-~~~~~g~~~l~~~~~~Di 156 (663)
+++.+ +++++| ++|..++++|+++++||++++.++++++++ ++++.++++.+++.+||.
T Consensus 104 ~~g~~------------~~~l~g--------~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~ 163 (562)
T PRK05326 104 LTGLF------------AHWLLG--------LDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDP 163 (562)
T ss_pred HHHHH------------HHHHhc--------CCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccH
Confidence 75543 245677 689999999999999999999999999995 789999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006034 157 AVVPLLVILPVLESQVSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQK 235 (663)
Q Consensus 157 ~~i~~l~i~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~ 235 (663)
++++++.++..+...+.. ..+..+ ..+...++..++++++.+++..+++++.. ...++.+..+++.+++.++++++.
T Consensus 164 ~ai~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~G~~~g~l~~~l~~~~~-~~~~~~~~i~~l~~~l~~~~~a~~ 241 (562)
T PRK05326 164 MAVFLTITLIELITGGETGLSWGFL-LLFLQQFGLGALIGLLGGWLLVQLLNRIA-LPAEGLYPILVLAGALLIFALTAA 241 (562)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhhHHHHHHHHHHHHHHHHHHH
Confidence 998887765544433221 222222 23333333334444455566677766552 223455566677777788889999
Q ss_pred hCCcHHHHHHHhhhhccCCc--hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHH-HHHHHHHHHHHHHHHH
Q 006034 236 LGFSDTLGAFLAGAILAETN--FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVL-ALLAGLIIIKTLIISA 312 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~~--~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l-~~~~~~~l~K~~~~~~ 312 (663)
+|.|+++|+|++|++++|.+ .++.+++..+.+..++.|+||+++|+.+|+..+.+.++..+ ..++..+++|++++++
T Consensus 242 lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l 321 (562)
T PRK05326 242 LGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFL 321 (562)
T ss_pred HCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 44566677777788999999999999999998876543333 3344567899999999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCch-hhHHHHHHHHHHHHhhhHHHHH
Q 006034 313 IGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL-ELNKLLIIVVVLSMALTPLLNE 375 (663)
Q Consensus 313 ~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~-~~~~~lv~~vvlt~ii~pi~~~ 375 (663)
..+.+++++||+++++|. ++||+++++++..+.+.|..+. ..+.+++.++++|+++.+....
T Consensus 322 ~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~ 384 (562)
T PRK05326 322 SLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLP 384 (562)
T ss_pred HHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHH
Confidence 998999999999999994 8999999999999999998864 5567777888888887655443
|
|
| >TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=291.82 Aligned_cols=262 Identities=44% Similarity=0.726 Sum_probs=219.0
Q ss_pred cccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
++||+|+|++++++++|+++|| +|++++.+.++.++++|+.+++|.+|+|+|++.+|+.+|++..++..++++|++..
T Consensus 10 l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
T TIGR00932 10 LSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLL 89 (273)
T ss_pred HHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999 47677778899999999999999999999999999999999999999999994333
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVV 159 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i 159 (663)
... .+++++ +++..++++|+++++||+++++++++|++..+++.|+++++++++||++++
T Consensus 90 ~~~------------~~~~~~--------~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 90 GLL------------LGHLLG--------LALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHH------------HHHHHC--------CCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 322 135566 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCc
Q 006034 160 PLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFS 239 (663)
Q Consensus 160 ~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s 239 (663)
+++.+......+.+.+. ......+....++.++.+.+.+|..+++.++..+.++.|.....++.+++..+++++.+|.|
T Consensus 150 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s 228 (273)
T TIGR00932 150 PLLALLPLLATSASTEH-VALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLS 228 (273)
T ss_pred HHHHHHHHHhcCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99888766554322221 11122233334444444556777788887777665566777777777788888899999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccC
Q 006034 240 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSID 284 (663)
Q Consensus 240 ~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~ 284 (663)
+++|||++|+++++.+.+++++++++++.++|.|+||+++|+++|
T Consensus 229 ~~lgaf~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 229 MALGAFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999999999999998778889999999999999999999999986
|
|
| >PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=339.70 Aligned_cols=349 Identities=30% Similarity=0.458 Sum_probs=84.2
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~~-~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
++||+++|++++|+++|+++||. ++++++ +..+.++++|+.+++|.+|+|+|.+.+|+.+|+.+..++.+++++++.
T Consensus 14 l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (380)
T PF00999_consen 14 LFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFIL 93 (380)
T ss_dssp ----------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------------
T ss_pred HHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhH
Confidence 58999999999999999999995 455666 889999999999999999999999999999999999999999999876
Q ss_pred HHhhhCCCCCcchhhHHHH---hhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEF---LFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQD 155 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~---~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~D 155 (663)
.+... ++ ..| +++..++++|.++++|||+++.++++|++..+++.++++.+++++||
T Consensus 94 ~~~~~------------~~~~~~~~--------~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d 153 (380)
T PF00999_consen 94 VGFLL------------SFFLFILG--------LSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIND 153 (380)
T ss_dssp ----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTT
T ss_pred HHHHH------------HHhhccch--------hhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhc
Confidence 33221 21 344 68999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHH
Q 006034 156 IAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA--RSSEAFVALCLLTVAGTSLL 232 (663)
Q Consensus 156 i~~i~~l~i~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~e~~~~~~l~~~~~~~~l 232 (663)
+++++++.++...... ...+.+... ..++. ......+..++.+++.++..++ ++++.....++.+++..+++
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (380)
T PF00999_consen 154 IIAIILLSILISLAQASGQSSLGQLL-LSFLW----IILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGL 228 (380)
T ss_dssp TTTTTTT-------------------------------------------------------------------------
T ss_pred cchhhhhhhhhhhhcccccccccchh-cchhh----hhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccc
Confidence 9999888776555421 112222211 11212 2222223334445555555444 45666677777788888999
Q ss_pred HHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchh-hhhHHHHHHHhccccChhHHh---hhHHHHHHHHHHHHHHHHH
Q 006034 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFR-GLLLGLFFVTTGSSIDIELLF---REWPNVLALLAGLIIIKTL 308 (663)
Q Consensus 233 ~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~-~~~~plFFv~vG~~l~~~~l~---~~~~~~l~~~~~~~l~K~~ 308 (663)
+|.+|.|+.+|+|++|+++++.+.+++++++++++. +++.|+||+++|+++|++.+. ..|...+.+++..+++|++
T Consensus 229 a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~ 308 (380)
T PF00999_consen 229 AEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFI 308 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhc
Confidence 999999999999999999998888888999999996 999999999999999998883 4456566666677789999
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHH
Q 006034 309 IISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 375 (663)
Q Consensus 309 ~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~ 375 (663)
++++..++.|.++|++..+++.+.+||+++++++..+.+.|.++++.+.+++.++++|++++|+..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~ 375 (380)
T PF00999_consen 309 GVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILS 375 (380)
T ss_dssp --------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred eeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877654
|
These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A. |
| >KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=303.94 Aligned_cols=367 Identities=23% Similarity=0.344 Sum_probs=290.8
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCc----------CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGII----------RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv----------~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~ 68 (663)
+++|++|+|.++.++++||++|| +|-. .....++.++.+|..+++|..|+|+|.+.+|+.+|++..++
T Consensus 40 ~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~ 119 (769)
T KOG1650|consen 40 ILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIA 119 (769)
T ss_pred HHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEE
Confidence 36899999999999999999999 3432 12357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccc-c-ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHH
Q 006034 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD-L-VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSA 146 (663)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~-~-~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~ 146 (663)
+.++++|+..+..+.. ...+...+ . .......+-..+..+.+.||.++++++|.|+++++++.|++
T Consensus 120 ~~~~~~p~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grl 187 (769)
T KOG1650|consen 120 IASVVLPFGLGFGLAF------------LLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRL 187 (769)
T ss_pred EEEeehhhHhhhhhhh------------hccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhh
Confidence 9999999876555422 11111100 0 00011225577888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHH
Q 006034 147 TLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR-----SSEAFVAL 221 (663)
Q Consensus 147 ~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~e~~~~~ 221 (663)
++++++++|++++.++.+...+.+....+..... +.... ..+..++.-++.++++.|+.+.+ .++.+...
T Consensus 188 a~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~ 262 (769)
T KOG1650|consen 188 ALSAAVVNDVAGWILLALALAFSSELKLSPLRSV-WDLVL----VIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICV 262 (769)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHH-HHHHH----HHHHHHheeeehhhhHHHHhhcCCCCCccccceehh
Confidence 9999999999999888776666554322221111 11111 22222334456677777776653 23445556
Q ss_pred HHHHHHHHHHHHHHhC-CcHHHHHHHhhhhccCC-chhhHHHhhhhch-hhhhHHHHHHHhccccChhHHhhhHHHHHHH
Q 006034 222 CLLTVAGTSLLTQKLG-FSDTLGAFLAGAILAET-NFRTQIEADIRPF-RGLLLGLFFVTTGSSIDIELLFREWPNVLAL 298 (663)
Q Consensus 222 ~l~~~~~~~~l~~~~G-~s~~lgAflaGl~l~~~-~~~~~i~~~~~~~-~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~ 298 (663)
.+..++.++.+++.++ +++.+|||+.|+++|+. |.+..+.++++.+ .++|+|+||+..|++.|+..+.. |......
T Consensus 263 ~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~ 341 (769)
T KOG1650|consen 263 TLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK-WGALIRT 341 (769)
T ss_pred hHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHH
Confidence 6666677777888888 89999999999999987 7899999999999 79999999999999999998876 6666667
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHH-hhhHHHHHHh
Q 006034 299 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM-ALTPLLNEIG 377 (663)
Q Consensus 299 ~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~-ii~pi~~~~~ 377 (663)
+....++|++++...+.++++|+|+++.+|.+|+.+|.+++.....+.+.+.++.+.|.++++++++++ +.+|++...+
T Consensus 342 i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 342 ILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 777889999999999999999999999999999999999999999999999999999999999988855 5568888888
Q ss_pred HHHHhhhh
Q 006034 378 RWAADFID 385 (663)
Q Consensus 378 ~~~~~~l~ 385 (663)
++..++..
T Consensus 422 ~p~~~~~~ 429 (769)
T KOG1650|consen 422 DPTRKYHG 429 (769)
T ss_pred chhhhcCc
Confidence 77665544
|
|
| >TIGR00844 c_cpa1 na(+)/h(+) antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=272.37 Aligned_cols=327 Identities=15% Similarity=0.107 Sum_probs=246.6
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCCc------hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRNL------TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVV 73 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~~------~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~ 73 (663)
+.+|+++|..+.++++|+++||. +++++. ...-.++++++++++|.+|++++.+.+|+.|+.++.+....+.
T Consensus 32 lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~ 111 (810)
T TIGR00844 32 VKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMT 111 (810)
T ss_pred HHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHH
Confidence 45699999999999999999995 555432 2233399999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHh-hccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhh---cCCCCChhHHHHHH
Q 006034 74 LSTLAFTAFELPPNGAVGTRILEFL-FHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE---KGELPTRFGSATLG 149 (663)
Q Consensus 74 ~~~~~~~~~~~~~~~~~G~~~~~~~-~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~---~~~~~~~~g~~~l~ 149 (663)
++++++++++ +++ .| ++|..|+++|+++++|+|+.+..+++. .+ ++.+...++.+
T Consensus 112 lT~livAL~a------------~~Li~G--------L~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ 170 (810)
T TIGR00844 112 SGWLVIALFV------------WILVPG--------LNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSC 170 (810)
T ss_pred HHHHHHHHHH------------HHHHcC--------CCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhh
Confidence 9988877652 344 45 799999999999999999988888873 33 57888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-C-CC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHH
Q 006034 150 ILLLQDIAVVPLLVILPVLESQ-V-SE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAFVALCLL 224 (663)
Q Consensus 150 ~~~~~Di~~i~~l~i~~~~~~~-~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~~~~l~ 224 (663)
++.+||.++++++.+...+... + .. ....++...+++.+++.++++++..|+..++.++..+.. ..+.+..+.+.
T Consensus 171 ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~La 250 (810)
T TIGR00844 171 ESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLI 250 (810)
T ss_pred hhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 9999999998877554333321 1 11 111222344555555555556666678888888776443 44556666666
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCCch-hhH--HHhhhhchhhhhHHHHHHHhccccChhHHhh------hHHHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAETNF-RTQ--IEADIRPFRGLLLGLFFVTTGSSIDIELLFR------EWPNV 295 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~-~~~--i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~------~~~~~ 295 (663)
+++.++.+++.+|.|+++++|+||+++++... .++ .....+.+..++..++|+++|+.+.+..+.. .|..+
T Consensus 251 LAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~i 330 (810)
T TIGR00844 251 LALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLI 330 (810)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHH
Confidence 77777788899999999999999999998531 221 1222233356889999999999998877642 35555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCC
Q 006034 296 LALLAGLIIIKTLIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVVFSLANRLGV 350 (663)
Q Consensus 296 l~~~~~~~l~K~~~~~~~~~~~--g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~ 350 (663)
++.++++++.|+..+++...+. ..+++|++++|| ++|||..++.++.++.+.+.
T Consensus 331 lLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 331 ILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 5556667788887777654332 468999999999 89999999999999988765
|
This model is specific for the fungal members of this family. |
| >TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=246.93 Aligned_cols=315 Identities=17% Similarity=0.168 Sum_probs=222.4
Q ss_pred cccccCchhHHHHHHHHHHhccCCC---cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQLGI---IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~gl---v~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
+++|+|+|.+++++++|+++||.+. ++.++ +.+..+++.+++|.+|+++|++.+|++++.++.+++.++++|+++
T Consensus 16 l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~ 93 (525)
T TIGR00831 16 TVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVV 93 (525)
T ss_pred HhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999997432 22222 344568999999999999999999999999999999999999887
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
++.+ .++++| ++|..++++|+++++|||+++.+++++.+ .+++..+++.+++.+||..+
T Consensus 94 v~~~------------~~~~~~--------l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~a 152 (525)
T TIGR00831 94 VGFS------------LNWILG--------IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAA 152 (525)
T ss_pred HHHH------------HHHHhc--------ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHH
Confidence 6554 234455 79999999999999999999999999977 47788899999999999999
Q ss_pred HHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhC
Q 006034 159 VPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLG 237 (663)
Q Consensus 159 i~~l~i~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G 237 (663)
++++.+......+ +..+.+... ..+....++.++++++..|+..++.++. .+.+.....+++++++..++++|.+|
T Consensus 153 lvlf~~~~~~~~~~~~~~~~~~~-~~f~~~~~~gi~vG~~~g~~~~~l~~~~--~~~~~~~~~l~l~~~~~~y~lAe~lg 229 (525)
T TIGR00831 153 LVVFAIAVAVALGKGVFDPLNAA-LDFAVVCVGGIAAGLAVGYLAYRLLRAK--IDDPLVEIALTILAPFAGFLLAERFH 229 (525)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998876655542 222322222 2333333333333333445555555432 22333445667777788889999999
Q ss_pred CcHHHHHHHhhhhccCCch----hhH----HHhhhhchhhhhHHHHHHHhccccChhHHhhhHH-------H--------
Q 006034 238 FSDTLGAFLAGAILAETNF----RTQ----IEADIRPFRGLLLGLFFVTTGSSIDIELLFREWP-------N-------- 294 (663)
Q Consensus 238 ~s~~lgAflaGl~l~~~~~----~~~----i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~-------~-------- 294 (663)
.|+++++|++|+++++... +++ ..+..+.+..++.+++|+.+|++++.. +.+.|. .
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 308 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGT-IFSAWKEILVAPAAVILALFTN 308 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999998521 122 233445556688999999999998642 211111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hh-----cCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 006034 295 VLALLAGLIIIKTLIISAIG--PR-----VGLTLQESVRIGLLLSQGGEFAFVVFSL 344 (663)
Q Consensus 295 ~l~~~~~~~l~K~~~~~~~~--~~-----~g~~~r~~~~~g~~l~~~G~~~lvla~~ 344 (663)
.+.+.......|++.++... ++ .+.++|+.+.++| .++||.++++++..
T Consensus 309 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~ 364 (525)
T TIGR00831 309 AFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALS 364 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHH
Confidence 11111223345554332211 11 2467999999999 69999999998754
|
This model is specific for the bacterial members of this family. |
| >COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=229.29 Aligned_cols=324 Identities=22% Similarity=0.235 Sum_probs=254.2
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCC--chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRN--LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~--~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
+.+|++.|.++.+++.|++.||. ++..+ ...-+.+..+.+..++|..|+++|.+.+|++++.+..++...++++++
T Consensus 24 ~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~ 103 (429)
T COG0025 24 LAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITAL 103 (429)
T ss_pred HHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999974 33333 234445559999999999999999999999999999999999999988
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIA 157 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~ 157 (663)
..+.+ .+++++ ++++..|+++|+++++|+|+.+.+++++.+ .+++..+++.+++.+||..
T Consensus 104 ~~g~~------------~~~l~~-------~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~ 163 (429)
T COG0025 104 GIGLL------------AHWLLP-------GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGV 163 (429)
T ss_pred HHHHH------------HHHHhC-------ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHH
Confidence 76655 234443 278999999999999999999999999976 6889999999999999999
Q ss_pred HHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHH
Q 006034 158 VVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAFVALCLLTVAGTSLLTQ 234 (663)
Q Consensus 158 ~i~~l~i~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~~~~l~~~~~~~~l~~ 234 (663)
+++++.+......+ +..+ .......++....+..++++...|+..++.++..+.+ +......+.+...+..+.+++
T Consensus 164 giv~f~~~l~~~~~~~~~~-~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~ 242 (429)
T COG0025 164 GIVLFKVALAALLGTGAFS-LGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAE 242 (429)
T ss_pred HHHHHHHHHHHHhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999876665543 2222 2222244555555545555556677788888876642 334455667777888888999
Q ss_pred HhCCcHHHHHHHhhhhccCC------c--hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHH
Q 006034 235 KLGFSDTLGAFLAGAILAET------N--FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIII 305 (663)
Q Consensus 235 ~~G~s~~lgAflaGl~l~~~------~--~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~ 305 (663)
.+|.|+.++++++|+..++. + .+.+.++..+.+..++..+.|+.+|++++...+... ++.++......+++
T Consensus 243 ~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~ 322 (429)
T COG0025 243 ALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLA 322 (429)
T ss_pred HhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999977411 1 233444455555678999999999999999888654 66677778888899
Q ss_pred HHHHHHHHHhhc------CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 306 KTLIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 306 K~~~~~~~~~~~------g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
|++.++...+.. ..+++++++++| -++||.++++++.....
T Consensus 323 R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~ 369 (429)
T COG0025 323 RPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPL 369 (429)
T ss_pred HHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchh
Confidence 999998887763 379999999999 69999999999887653
|
|
| >COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=217.73 Aligned_cols=343 Identities=20% Similarity=0.223 Sum_probs=277.4
Q ss_pred cccccCchhHHHHHHHHHHhcc--CCC--cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQ--LGI--IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp--~gl--v~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
++.|++.|..+-++..|++.|- .|. .++.+.-..+.++++++++|..|+..+++.+|...++++.++..++++|..
T Consensus 25 ~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~ 104 (574)
T COG3263 25 ISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSG 104 (574)
T ss_pred HHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3579999999999999999997 442 245677788999999999999999999999999999999999999999988
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIA 157 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~ 157 (663)
+.... ++|.++ .+|.+++++|+++.+|+.+.+..+|.+++ ++.+++.++.-++--||.+
T Consensus 105 Ltg~a------------A~~ll~--------l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPm 163 (574)
T COG3263 105 LTGVA------------AAYLLN--------LDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPM 163 (574)
T ss_pred HHHHH------------HHHHhc--------cHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCce
Confidence 76655 468888 79999999999999999999999998777 5888888888888999999
Q ss_pred HHHHHH-HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 158 VVPLLV-ILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 158 ~i~~l~-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
++++.. ++-..+.+.+.-.|..+ ..+++..+...++++.+.++..++.++.. -.+..+..+++...+..+.+++.+
T Consensus 164 AvfLTitlieli~~get~l~~~~l-l~f~~q~glG~l~G~~gg~l~~~~Inr~n--Ld~GL~pil~la~~Ll~fs~t~ai 240 (574)
T COG3263 164 AVFLTITLIELIAGGETNLSWGFL-LGFLQQFGLGLLLGLGGGKLLLQLINRIN--LDSGLYPILALAGGLLIFSLTGAI 240 (574)
T ss_pred eeehhHHHHHHHhccccccCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHHHHHh
Confidence 876654 33333333222223322 33556666556666777777777777652 234555566666666777899999
Q ss_pred CCcHHHHHHHhhhhccCC--chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAI 313 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~--~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~ 313 (663)
|-|+.++.+++|+++.|. +.+|.+.+..+.+..+.-.+.|...|...++++++.. .+.++.-+...+++|++.+|+.
T Consensus 241 GGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~ 320 (574)
T COG3263 241 GGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLG 320 (574)
T ss_pred cCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 999999999999999998 4678888999999889999999999999999999764 4555555667779999999998
Q ss_pred HhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhh-HHHHHHHHHHHHhh
Q 006034 314 GPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLEL-NKLLIIVVVLSMAL 369 (663)
Q Consensus 314 ~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~-~~~lv~~vvlt~ii 369 (663)
..-+++++||+++++| .+-||.++++++....-.|.-+..+ |.+..+++++|.++
T Consensus 321 l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 321 LIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred hcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 8888999999999999 6999999999999998888766655 56666677777655
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=223.32 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=123.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++|++|||+|++|+.++++|+ ++|+++++||.|+ .+...+++.++++||++|+++|++||+++|+++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~----------~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLR----------QRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHH----------HCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEE
Confidence 4789999999999999999997 7889999999874 355556789999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+++++||++|..+++++|+++|+++++++++|+++.++++++|+|.|++|+..+|+.+++.+..
T Consensus 307 I~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 307 LALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred EEcCCChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999988876
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-25 Score=218.42 Aligned_cols=204 Identities=20% Similarity=0.182 Sum_probs=161.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+++|+|+|++|+.+|+.|. +.|++|++||.|++++++... .+.++++||++|+++|++||+++||+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~----------~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS----------EEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcHHHHHHHHHHH----------hCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 5899999999999999998 899999999999999998444 8899999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 562 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 562 (663)
++|++|+.|+.+|..+++.+.-.+++||+++++|.+.+++.|+|.+++|+.+++.++++.+.. |...+++ +
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~-----p~~~~~~----~ 142 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVT-----PGALDVL----E 142 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcC-----CChheEE----e
Confidence 999999999999999988654448999999999999999999999999999999999999988 7666554 2
Q ss_pred ccc-ccchhhhcccCC-cchhcccccccchhhhhhhccCCCCCCCc-----ccccCCCCCCCCcCCCCCCceEEEeecCC
Q 006034 563 NSM-EIQAQEVLSQKD-DQEFDIMKPLQVRVADIVEAEKTIPSTSN-----DDKLSREDNTDTAGEDAKGVLYCELNGTN 635 (663)
Q Consensus 563 ~~~-~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 635 (663)
..+ +..+.+..+..+ ...++++++++ .+ .+..... ++.....|+++|++|+||++..+|...+-
T Consensus 143 ~~~~~~~~~~~~v~~~~~~~g~~L~el~------~~---~~~~~~vvai~r~~~~~~~p~g~~~l~~gD~l~v~~~~~~i 213 (225)
T COG0569 143 LAGGDAEVIEEKVAEDSPLAGKTLRELD------LR---LPYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGAPEAL 213 (225)
T ss_pred ecCCcceEEEEEecCCCccCCcCHHHhc------cc---CCCCcEEEEEecCCCceecCCCCCEecCCCEEEEEEcHHHH
Confidence 221 233333333222 22233333333 11 1111111 22267789999999999999999987654
Q ss_pred C
Q 006034 636 N 636 (663)
Q Consensus 636 ~ 636 (663)
+
T Consensus 214 ~ 214 (225)
T COG0569 214 R 214 (225)
T ss_pred H
Confidence 4
|
|
| >TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=214.65 Aligned_cols=322 Identities=14% Similarity=0.119 Sum_probs=223.9
Q ss_pred CchhHHHHHHHHHHhccC--CC--cCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 006034 7 CRSQILGFFFAGIVLNQL--GI--IRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTA 81 (663)
Q Consensus 7 ~lP~ivg~ilaGillGp~--gl--v~~~-~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (663)
++|..+..++.|+++|+. +. .+.. -.-+.+-.+.+..++|.+|++++.+.++++.+.++.+++.++++++++++.
T Consensus 34 ~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~ 113 (559)
T TIGR00840 34 AVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGL 113 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999973 21 2111 123556667889999999999999999999999999999999999877665
Q ss_pred hhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHH
Q 006034 82 FELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPL 161 (663)
Q Consensus 82 ~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~ 161 (663)
..+ ++.........+++|..++++|+++++|+|+.+.+++++.+ .+.+.-.++.+++.+||.+++++
T Consensus 114 ~l~------------~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVL 180 (559)
T TIGR00840 114 SLY------------GICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVL 180 (559)
T ss_pred HHH------------HHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHH
Confidence 421 11110000001258999999999999999999999999988 57888999999999999999999
Q ss_pred HHHHHHhhhcC-CCchhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 162 LVILPVLESQV-SESVWPML----VKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 162 l~i~~~~~~~~-~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
+.++..+...+ ....+..+ ...+...+++ ++++++..++..++.++....+ .....+++++.++.++++|.+
T Consensus 181 f~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GG-iliG~v~G~l~~~l~r~~~~~~--~~e~~l~l~~~yl~Y~lAE~l 257 (559)
T TIGR00840 181 YNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGG-LLVGVVFGFLVAFITRFTHHIR--QIEPLFVFLISYLSYLFAETL 257 (559)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHh
Confidence 87766554321 11111111 1111222222 3333344456666666543222 333445666777788899999
Q ss_pred CCcHHHHHHHhhhhccCC---chhh----HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAET---NFRT----QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLI 309 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~---~~~~----~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~ 309 (663)
|.|++++++++|+++++. ..++ .+....+.+..++..+.|+++|+.+......-.|..++..++..++.|++.
T Consensus 258 ~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~l~ 337 (559)
T TIGR00840 258 HLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLG 337 (559)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999753 2222 233444555668889999999997632211113444444455667889988
Q ss_pred HHHHHhh------cCCChHHHHHHHHhhhhhhhHHHHHHHHH
Q 006034 310 ISAIGPR------VGLTLQESVRIGLLLSQGGEFAFVVFSLA 345 (663)
Q Consensus 310 ~~~~~~~------~g~~~r~~~~~g~~l~~~G~~~lvla~~a 345 (663)
++...+. .+.++++.+.++| .++||.++++++...
T Consensus 338 V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l 378 (559)
T TIGR00840 338 VRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLL 378 (559)
T ss_pred HHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhC
Confidence 8765543 3579999999999 689999999988654
|
This model is specific for the eukaryotic members members of this family. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=181.47 Aligned_cols=116 Identities=36% Similarity=0.532 Sum_probs=109.9
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~ 485 (663)
|+|||+|++|+.+++.|. +.+++|+++|.|+++++.+++.++++++||++|+++|+++++++|+.+++++
T Consensus 1 vvI~G~g~~~~~i~~~L~----------~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK----------EGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES-SHHHHHHHHHHH----------HTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcCCHHHHHHHHHHH----------hCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 689999999999999998 6667999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcC
Q 006034 486 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILE 531 (663)
Q Consensus 486 ~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p 531 (663)
+||+.|+.++..+|+++|+.+++++++++++.+.++++|+|.||+|
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 9999999999999999999999999999999999999999999998
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=208.26 Aligned_cols=202 Identities=19% Similarity=0.188 Sum_probs=161.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++|++|||+|++|+.+++.|. +.|++|++||.|+++++.+++. +..+++||++|+++|+++++++||
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~----------~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLE----------KEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCC
Confidence 4689999999999999999997 7899999999999999998874 688999999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 559 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~ 559 (663)
.++++++||+.|+.+++.+|+.+++ +++++++++++.+.++.+|+|.|++|+..++..+++.+.. +...+. ..
T Consensus 300 ~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~-----~~~~~~-~~ 372 (453)
T PRK09496 300 AFIALTNDDEANILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRR-----GDIVAV-HS 372 (453)
T ss_pred EEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhc-----cchhhh-hh
Confidence 9999999999999999999999876 9999999999999999999999999999999999988877 443222 11
Q ss_pred HHhcccccchhhhcccCCc-chhcccccccchhhhhhhccCCCCCCCc-----ccccCCCCCCCCcCCCCCCceEEEeec
Q 006034 560 LVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRVADIVEAEKTIPSTSN-----DDKLSREDNTDTAGEDAKGVLYCELNG 633 (663)
Q Consensus 560 ~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~d~~~~~~~~~ 633 (663)
. ..++..+.|+.++.+. ..++++.+++.+ +.... +++. ..|++++++++||++.+||.+.
T Consensus 373 ~--~~~~~~~~~~~v~~~s~~~g~~l~el~l~-----------~~~~i~~i~r~~~~-~~p~~~~~l~~gD~l~v~~~~~ 438 (453)
T PRK09496 373 L--RRGAAEAIEAVAHETSKVVGKPLKDLKLP-----------KGVLIGAIVRGGEV-IIPTGDTVIEPGDHVIVFVLDK 438 (453)
T ss_pred h--cCCcEEEEEEEeCCCChhccCCHHHcCCC-----------CCCEEEEEEECCEE-EcCCCCcEECCCCEEEEEEcCc
Confidence 1 1123455555544321 112333332211 11111 3344 5799999999999999999887
Q ss_pred C
Q 006034 634 T 634 (663)
Q Consensus 634 ~ 634 (663)
.
T Consensus 439 ~ 439 (453)
T PRK09496 439 K 439 (453)
T ss_pred c
Confidence 6
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-19 Score=196.62 Aligned_cols=213 Identities=16% Similarity=0.139 Sum_probs=158.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
|++|||+|++|+.+++.|. +.|++|+++|.|+++++.+++ .+.++++||+++++.|++++++++|.+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~----------~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLS----------GENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 7999999999999999997 789999999999999999886 68899999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh---HHHH--HHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH---LLDL--KKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLR 558 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~---~~~l--~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~ 558 (663)
++++|+.|..++..+|+++|..++|++++++++ .+.+ +++|+|.|++|+..+|..+++.+.. |...+.+
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~-----~~~~~~~- 145 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEY-----PGALDVE- 145 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcC-----CCceEee-
Confidence 999999999999999999999899999988876 3344 7899999999999999999988766 4332221
Q ss_pred HHHhcccccchhhhcccCCc-chhcccccccchhhhhhhccCCCCCCCcccccCCCCCCCCcCCCCCCceEEEeecCCCc
Q 006034 559 QLVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTNNF 637 (663)
Q Consensus 559 ~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 637 (663)
+ + .+.+..+.|+.++.+. ...+++.++..+. .+.......-..+++ ...|++++++++||++.++|.+..-+-
T Consensus 146 ~-~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~---~~~~~~vi~i~r~~~-~~~p~~~~~l~~gD~l~v~g~~~~l~~ 219 (453)
T PRK09496 146 E-F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHF---PDIDVRVVAIFRGGR-LIIPRGDTVIEAGDEVYFIGAREHIRA 219 (453)
T ss_pred e-e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhc---CCCceEEEEEEECCE-EEcCCCCcEecCCCEEEEEeCHHHHHH
Confidence 1 1 1234556666555432 1122222222110 000000000001223 336899999999999999998876553
Q ss_pred cc
Q 006034 638 LD 639 (663)
Q Consensus 638 ~~ 639 (663)
+.
T Consensus 220 ~~ 221 (453)
T PRK09496 220 VM 221 (453)
T ss_pred HH
Confidence 33
|
|
| >PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-14 Score=150.48 Aligned_cols=268 Identities=22% Similarity=0.296 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChH----HHHHhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLA----RLKALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~----~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+--+.+++|.+|+|++.+ ++++.+|.. ...++.++++|.++...+ +..
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~-----------------n~~--- 121 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAV-----------------NLA--- 121 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHH-----------------hCC---
Confidence 345577778889999999999665 343334443 357778888887664433 210
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~-~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
.....--+ .+-++||.+....++...|. .++..+..+++.+++||+.++++++++. + ++-+ +..+.
T Consensus 122 ----~~~~~~GW-~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t-~~i~-~~~L~--- 188 (423)
T PRK14853 122 ----GGGALRGW-AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---T-SELN-LEALL--- 188 (423)
T ss_pred ----chhhhhhh-hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---C-CCCC-HHHHH---
Confidence 00011111 23356889999999998764 4788888999999999999999888754 1 1112 22211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC----------
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET---------- 254 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~---------- 254 (663)
.....+++ .+++. +.+.++....+.+ .+.+++.+...|+|+.+|+|++|+++|..
T Consensus 189 -~a~~~~~~-----l~~l~-------~~~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~ 253 (423)
T PRK14853 189 -LALVPLAL-----FWLLV-------QKRVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEA 253 (423)
T ss_pred -HHHHHHHH-----HHHHH-------HcCCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccc
Confidence 11111111 12221 1122223322222 34567799999999999999999999842
Q ss_pred --chhhHHHhhhhch-hhhhHHHH-HHHhccccCh-hHHhhhH--HHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 006034 255 --NFRTQIEADIRPF-RGLLLGLF-FVTTGSSIDI-ELLFREW--PNVLALLAGLIIIKTLIISAIGPRV---------- 317 (663)
Q Consensus 255 --~~~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~-~~l~~~~--~~~l~~~~~~~l~K~~~~~~~~~~~---------- 317 (663)
+..++++++++++ ..+++|+| |+..|.++|. ..+.+.+ +..+.+++..+++|+++++..++..
T Consensus 254 ~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~ 333 (423)
T PRK14853 254 GPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDD 333 (423)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCC
Confidence 1246789999998 57999999 9999999986 4342222 3456677888999999988877642
Q ss_pred CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 318 GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 318 g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
+.+|++-.-.|+.-+-.=++++.++.++++
T Consensus 334 ~~~~~~l~gv~~L~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 334 DLTWIDVFGVALLAGIGFTVSLLIGELAFG 363 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 678888888887444444677777788873
|
|
| >KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=143.29 Aligned_cols=317 Identities=17% Similarity=0.173 Sum_probs=222.2
Q ss_pred chhHHHHHHHHHHhccC--CCcCC------chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 8 RSQILGFFFAGIVLNQL--GIIRN------LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 8 lP~ivg~ilaGillGp~--glv~~------~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
+...+--.+.|+++||. .++++ +.....++.+-+..-.|.++.|+.-..+.++++.++.+-+.-+...++..
T Consensus 38 lgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs 117 (467)
T KOG4505|consen 38 LGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVS 117 (467)
T ss_pred ccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456789999993 44432 23456799999999999999999999999999999988877777777666
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCC---CCChhHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE---LPTRFGSATLGILLLQDI 156 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~---~~~~~g~~~l~~~~~~Di 156 (663)
+.++ +.++. +.++.+++++++.+.+|+|.....++.+.+. .+.+...++.+++..||.
T Consensus 118 ~~fv------------y~l~p-------~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDG 178 (467)
T KOG4505|consen 118 FGFV------------YALIP-------NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDG 178 (467)
T ss_pred HHHH------------HHHhc-------cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCC
Confidence 6552 22332 2789999999999999999999888886554 445667778899999999
Q ss_pred HHHHHHHHHHHhh-hcCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHH
Q 006034 157 AVVPLLVILPVLE-SQVS---ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAFVALCLLTVAGTS 230 (663)
Q Consensus 157 ~~i~~l~i~~~~~-~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~~~~l~~~~~~~ 230 (663)
++++++.+..-+. .... .-.|. ...++.-..+..+++.+.+|+.|..+++..+++ ..|.+..+-+.+.+.++
T Consensus 179 Maipflflai~Ll~h~~~r~~~rdwv--~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~ 256 (467)
T KOG4505|consen 179 MAIPFLFLAIDLLRHKPRRKAGRDWV--CDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCM 256 (467)
T ss_pred cchhHHHHHHHHHhcCchhccCCcee--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 9998876543322 1111 12232 122333333334445556678888888776655 67888888888888888
Q ss_pred HHHHHhCCcHHHHHHHhhhhccCC-chhhHHH-hhhhch-hhhhHHHHHHHhccccChhHHhh------hHHHHHHHHHH
Q 006034 231 LLTQKLGFSDTLGAFLAGAILAET-NFRTQIE-ADIRPF-RGLLLGLFFVTTGSSIDIELLFR------EWPNVLALLAG 301 (663)
Q Consensus 231 ~l~~~~G~s~~lgAflaGl~l~~~-~~~~~i~-~~~~~~-~~~~~plFFv~vG~~l~~~~l~~------~~~~~l~~~~~ 301 (663)
.+.+.+|.+..+-.|.||.+++-. -++++.+ ..+..+ ..++.-.||++.|..++++++.. .|..++.-+ .
T Consensus 257 gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi-~ 335 (467)
T KOG4505|consen 257 GIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSI-T 335 (467)
T ss_pred hhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHH-H
Confidence 999999999999999999999954 2333332 233444 34677889999999999999853 255444333 3
Q ss_pred HHHHHHHH-HHHHHhhc--CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 302 LIIIKTLI-ISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 302 ~~l~K~~~-~~~~~~~~--g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
.+..|-+. +++.-... =.+|||+++.|. ++|.|.-++..+.++..
T Consensus 336 iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 336 IIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 33444333 33322221 247999999999 89999988888887753
|
|
| >KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-14 Score=152.13 Aligned_cols=327 Identities=14% Similarity=0.149 Sum_probs=211.8
Q ss_pred CcccccC---chhHHHHHHHHHHhccC------CCcC---Cchh--HHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 006034 1 MIMRILC---RSQILGFFFAGIVLNQL------GIIR---NLTD--VKVLSEWGILFLLFEMGLELSLARLKALAKFAFG 66 (663)
Q Consensus 1 ~l~~rl~---lP~ivg~ilaGillGp~------glv~---~~~~--l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~ 66 (663)
|++++-| +|.-+.-++.|+++|-. +..+ .... -+.+-.+-+--+.|..|.+++.+.++++...+..
T Consensus 52 hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~ 131 (575)
T KOG1965|consen 52 HLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILL 131 (575)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccceechhhhhhhhHHHHH
Confidence 3556667 89999999999999851 2222 1111 1256667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHH
Q 006034 67 MGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSA 146 (663)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~ 146 (663)
.+..++.+++.+..+. .++++. ......+++.+++.+|+++|+|+|..+..++++.+. +...=.+
T Consensus 132 fa~~Gt~IS~~~ig~g-------------v~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~Ly~L 196 (575)
T KOG1965|consen 132 FAIFGTFISAVIIGAG-------------VYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPKLYTL 196 (575)
T ss_pred hhhcceeeehhHHhhH-------------HHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccceeee
Confidence 9998888776554433 233332 122234899999999999999999999999999984 4555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 006034 147 TLGILLLQDIAVVPLLVILPVLESQVSESVWPM--LVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLL 224 (663)
Q Consensus 147 ~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~ 224 (663)
+.|++++||..+++++..+..+.... .+.|.. ....++....+-..+++..+++...+.+...-++.......+.++
T Consensus 197 VFGESvLNDAvsIVlf~~i~~~~~~~-~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~lE~al~ll 275 (575)
T KOG1965|consen 197 VFGESVLNDAVSIVLFNTIQKFQLGS-LNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSLESALMLL 275 (575)
T ss_pred eecchhccchhHHHHHHHHHHHccCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 88999999999999998776665432 222222 112222222222222222233333333333333444445566677
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCC---chh----hHHHhhhhchhhhhHHHHHHHhcc-ccChhHHhhh-HHHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAET---NFR----TQIEADIRPFRGLLLGLFFVTTGS-SIDIELLFRE-WPNV 295 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~---~~~----~~i~~~~~~~~~~~~plFFv~vG~-~l~~~~l~~~-~~~~ 295 (663)
+....++++|..|+|+++..+..|++.++. ..+ ...++.++.+.-+...+-|.++|+ .++....... ...+
T Consensus 276 ~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~~fv 355 (575)
T KOG1965|consen 276 MSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSLQFV 355 (575)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeechHHH
Confidence 778888899999999999999999999974 222 223344444556777788999995 3444443222 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhhhhhHHHHHHH
Q 006034 296 LALLAGLIIIKTLIISAIGPRVG----------LTLQESVRIGLLLSQGGEFAFVVFS 343 (663)
Q Consensus 296 l~~~~~~~l~K~~~~~~~~~~~g----------~~~r~~~~~g~~l~~~G~~~lvla~ 343 (663)
....++++++|+.-++-...... .|.++-..+.|.=.-||.++++++.
T Consensus 356 ~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~ 413 (575)
T KOG1965|consen 356 FGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALAL 413 (575)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHh
Confidence 45556667888876655554432 2333334444433368888777664
|
|
| >COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=134.49 Aligned_cols=144 Identities=33% Similarity=0.480 Sum_probs=135.0
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...+|+++||+|++|+.+++.|. ..+.+++++|.|++.++.++..+..+++||+++.++|+++++++|+.
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~----------~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~ 88 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALL----------ASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARA 88 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHCCCcEEEecCCCHHHHHhcChhheeE
Confidence 57899999999999999999997 67789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC-hhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHH
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-MMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~-~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
++++++++..|..++..++..+|+.+++++.++ ..+...+...|+|.++.|....+..+++.++...+......
T Consensus 89 vi~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (212)
T COG1226 89 VIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEA 163 (212)
T ss_pred EEEecCCHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchhhh
Confidence 999999999999999999999999999999999 77889999999999999999999999999998776655433
|
|
| >TIGR00773 NhaA Na+/H+ antiporter NhaA | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-11 Score=127.68 Aligned_cols=268 Identities=19% Similarity=0.228 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcc-ccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHS-RSD 104 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~-~~~ 104 (663)
..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++...+ +. .++
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~-----------------n~~~~~ 114 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAF-----------------NANDPI 114 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhhe-----------------ecCCCc
Confidence 345577777889999999999877543 333333 346777888887664433 21 122
Q ss_pred cccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 105 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 105 ~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
..++|....|.-++.++.. ..++.+ ..+......+++.+++||+.++++.+++. ++ +-+ +..+.
T Consensus 115 ~~~GW~IP~ATDiAFalgv------lallG~--~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~-~i~-~~~L~--- 178 (373)
T TIGR00773 115 TREGWAIPAATDIAFALGV------MALLGK--RVPLALKIFLLALAIIDDLGAIVIIALFY---TN-DLS-MAALL--- 178 (373)
T ss_pred ccCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHHHhhHhheeeec---CC-CCC-HHHHH---
Confidence 2345666665555555443 222222 25666677888999999999988887643 11 111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-----hhhH
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FRTQ 259 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-----~~~~ 259 (663)
.....+. ..+++++ .+.++......+. ...++.....|+|+.+|+|++|+++|..+ ..++
T Consensus 179 -~a~~~~~-----~l~~~~~-------~~v~~~~~y~~lg--vllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~r 243 (373)
T TIGR00773 179 -VAAVAIA-----VLAVLNR-------CGVRRLGPYMLVG--VILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKR 243 (373)
T ss_pred -HHHHHHH-----HHHHHHH-------cCCchhhHHHHHH--HHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHH
Confidence 1111111 1122221 1223332222222 22344458999999999999999999741 2467
Q ss_pred HHhhhhch-hhhhHHHH-HHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHH
Q 006034 260 IEADIRPF-RGLLLGLF-FVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVR 326 (663)
Q Consensus 260 i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~ 326 (663)
+++.++|. ..+++|+| |+..|.++|...+... ++..+.+++..+++|+++++..++.. |.+|++-.-
T Consensus 244 leh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~g 323 (373)
T TIGR00773 244 LEHVLHPWVAYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFA 323 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 88888887 46788999 9999999986554321 34456677888899999998888652 668888888
Q ss_pred HHHhhhhhhhHHHHHHHHHHH
Q 006034 327 IGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 327 ~g~~l~~~G~~~lvla~~a~~ 347 (663)
.|+.-+-.=++++.++..+++
T Consensus 324 v~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 324 VGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 887444444667777777774
|
These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized. |
| >PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-10 Score=117.54 Aligned_cols=267 Identities=18% Similarity=0.204 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
...-+.+.-+.+++|.+|+|++-+.+. +.+|.. ...++.++++|.++...+ ....+.
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~-----------------n~~~~~ 130 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFL-----------------NADTPS 130 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhhe-----------------ecCCCc
Confidence 345577888899999999999877543 333333 346777888887654433 222222
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
.+||....|.-+++++. ++.=.| ..+......+++.+++||+.++++.+++. +. +-+ +..+
T Consensus 131 ~~GWgIPmATDIAFAlg---------vLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~i~-~~~L---- 192 (438)
T PRK14856 131 QHGFGIPMATDIAFALG---------VIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---TT-NLK-FAWL---- 192 (438)
T ss_pred cCccccccHHHHHHHHH---------HHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CC-CCc-HHHH----
Confidence 34455555444444443 333222 24566677889999999999988887643 11 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-h-------
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-F------- 256 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-~------- 256 (663)
+...+.++ ..+++.+. +.+.....+ .+....++.....|+|+.++..+.|+++|..+ .
T Consensus 193 ~~a~~~~~-----~l~~ln~~-------~v~~~~~Y~--~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~ 258 (438)
T PRK14856 193 LGALGVVL-----VLAVLNRL-------NVRSLIPYL--LLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVEL 258 (438)
T ss_pred HHHHHHHH-----HHHHHHHc-------CCccccHHH--HHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhh
Confidence 11111111 11222221 112222111 23334566788999999999999999998531 0
Q ss_pred -------------------------------------hhHHHhhhhch-hhhhHHHH-HHHhccccChhHHhhhHHHHHH
Q 006034 257 -------------------------------------RTQIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFREWPNVLA 297 (663)
Q Consensus 257 -------------------------------------~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~~~~~~l~ 297 (663)
-+++++.++|. ..+.+|+| |...|..++.......-+..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lG 338 (438)
T PRK14856 259 LELGKRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLG 338 (438)
T ss_pred hhhhhhhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHH
Confidence 13466677776 45889999 8999999986533222344566
Q ss_pred HHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 298 LLAGLIIIKTLIISAIGPRV----------GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 298 ~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
+++.++++|+++++..++.. |.+|++-.-.|..-+..=++++.++..+++
T Consensus 339 I~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 339 VILGLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77888999999998887652 668888887777444444666777777773
|
|
| >PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-09 Score=109.59 Aligned_cols=269 Identities=18% Similarity=0.208 Sum_probs=164.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++...+ +..++.
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~-----------------n~~~~~ 118 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSI-----------------NHDIKV 118 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhh-----------------ccCCcc
Confidence 344577777889999999999877443 333333 346778888887765443 212222
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESL 185 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l 185 (663)
.++|....|.-+++++.. ..++.+ ..+....-.+++.+++||+.++++.+++. ++.-.+..+
T Consensus 119 ~~GW~IP~ATDIAFAlgv------LallG~--rvP~~lrvFLlaLAIvDDlgAI~VIAlFY-----t~~i~~~~L----- 180 (383)
T PRK14854 119 INGWAIPSATDIAFTLGI------LALLGT--RVPAKLKLLVITIAIFDDIAAIAIIAIFY-----TKSLSLLSL----- 180 (383)
T ss_pred cCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHhhhhHhheeeec-----CCCccHHHH-----
Confidence 344555555555554442 222222 25666677788999999999988877642 111112111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC-----chhhHH
Q 006034 186 KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRTQI 260 (663)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~-----~~~~~i 260 (663)
..+.+.+ ...++. ++..+.++.-.+ +......++.....|+|+.++..+.|+++|.. ...+++
T Consensus 181 --~~A~~~~--~~l~~~----nr~~~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rl 248 (383)
T PRK14854 181 --SLGTLFI--LAMIIC----NRIFKINRSSVY----VVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFM 248 (383)
T ss_pred --HHHHHHH--HHHHHH----HHhcCCceehHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHH
Confidence 1111111 111121 111111122222 12334456778899999999999999999963 123678
Q ss_pred Hhhhhch-hhhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHH
Q 006034 261 EADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVRI 327 (663)
Q Consensus 261 ~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~~ 327 (663)
++.++|. ..+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. |.+|++-.-.
T Consensus 249 eh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv 328 (383)
T PRK14854 249 EDSLHPWIIYFILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGI 328 (383)
T ss_pred HHHhhchHHHhhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 8899998 56889999 888998884222221 123455677888999999988877642 5688888888
Q ss_pred HHhhhhhhhHHHHHHHHHHH
Q 006034 328 GLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 328 g~~l~~~G~~~lvla~~a~~ 347 (663)
|+.-+..=++++.++..+++
T Consensus 329 ~~L~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 329 SLLCGIGFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 87444444667777777774
|
|
| >PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=106.46 Aligned_cols=268 Identities=20% Similarity=0.221 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcc-ccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHS-RSD 104 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~-~~~ 104 (663)
..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++...+ +. .+.
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~-----------------n~~~~~ 121 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLF-----------------NYADPV 121 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhhe-----------------ecCCCc
Confidence 345577777889999999999887553 233333 346777888887664433 21 112
Q ss_pred cccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 105 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 105 ~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
..++|....|.-++.++.. ..++.+ ..+......+++.+++||+.++++.+++. + +.-.+..+
T Consensus 122 ~~~GWaIP~ATDIAFalgv------lallG~--rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t--~~i~~~~L---- 184 (388)
T PRK09561 122 TREGWAIPAATDIAFALGV------LALLGS--RVPVALKIFLLALAIIDDLGAIVIIALFY---T--SDLSMVSL---- 184 (388)
T ss_pred ccCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHHhhhHhheeeec---C--CCccHHHH----
Confidence 2344555555555544432 122222 24566677888999999999988887643 1 11112211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-----hhhH
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FRTQ 259 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-----~~~~ 259 (663)
..+..++ ...++.++ .+.+...... ......++.....|+|+.++..+.|+++|..+ ..++
T Consensus 185 ---~~a~~~~--~~l~~ln~-------~~v~~~~~Y~--~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~r 250 (388)
T PRK09561 185 ---GVAAVAI--AVLAVLNL-------CGVRRTSVYI--LVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAER 250 (388)
T ss_pred ---HHHHHHH--HHHHHHHH-------cCCccchHHH--HHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHH
Confidence 1111111 11122221 1222222222 22334567788999999999999999999631 2467
Q ss_pred HHhhhhch-hhhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHH
Q 006034 260 IEADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVR 326 (663)
Q Consensus 260 i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~ 326 (663)
+++.++|. ..+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. |.+|++-.-
T Consensus 251 leh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~g 330 (388)
T PRK09561 251 LEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYA 330 (388)
T ss_pred HHHHhhhhhhheeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 88999998 45689998 888898883222211 123455677888899999988887642 568888888
Q ss_pred HHHhhhhhhhHHHHHHHHHHH
Q 006034 327 IGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 327 ~g~~l~~~G~~~lvla~~a~~ 347 (663)
.|..-+-.=++++.++..+++
T Consensus 331 v~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 331 VGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 887434444566667777774
|
|
| >PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-08 Score=106.02 Aligned_cols=269 Identities=19% Similarity=0.241 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+--+.+++|.+|+|++-+.+. +.+|.. ...++.++++|.++...+- .+ .+..
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n---------------~g-~~~~ 122 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFN---------------YN-NPET 122 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheee---------------cC-CCcc
Confidence 344577777889999999999877543 333333 3467778888877654431 11 1112
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESL 185 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l 185 (663)
.++|....|.-++.++.. ..++.+ ..+......+++.+++||+.++++.+++.. ++-+ +..+ +
T Consensus 123 ~~GWgIPmATDIAFAlgv------L~llG~--rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~-~~~L----~ 185 (389)
T PRK09560 123 LRGWAIPAATDIAFALGV------LALLGK--RVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLS-LPAL----A 185 (389)
T ss_pred cCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCC-HHHH----H
Confidence 344555555555544432 123332 246666778889999999999888876431 1111 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-------hhh
Q 006034 186 KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-------FRT 258 (663)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-------~~~ 258 (663)
.....+. ..++..+. +.+...... ......++.....|+|+.++..+.|+++|..+ ..+
T Consensus 186 ~a~~~~~-----~l~~ln~~-------~v~~~~~Y~--~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~ 251 (389)
T PRK09560 186 LAAIAIA-----VLFLLNRL-------GVTKLTPYL--IVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLH 251 (389)
T ss_pred HHHHHHH-----HHHHHHHc-------CCccchHHH--HHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHH
Confidence 1111111 11222221 222222222 23334567788999999999999999999631 136
Q ss_pred HHHhhhhchh-hhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHH
Q 006034 259 QIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESV 325 (663)
Q Consensus 259 ~i~~~~~~~~-~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~ 325 (663)
++++.++|.. .+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. |.+|++-.
T Consensus 252 rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~ 331 (389)
T PRK09560 252 HLEHALHPWVAFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIY 331 (389)
T ss_pred HHHHHhhhhhhhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 7888999985 4559999 888998884322322 123455677888999999998887652 66888888
Q ss_pred HHHHhhhhhhhHHHHHHHHHHH
Q 006034 326 RIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 326 ~~g~~l~~~G~~~lvla~~a~~ 347 (663)
-.|..-+-.=++++.++..+++
T Consensus 332 gv~~L~GIGFTmSLFIa~LAF~ 353 (389)
T PRK09560 332 GVSVLCGIGFTMSLFIGSLAFG 353 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 8887444444667777777773
|
|
| >PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-08 Score=107.98 Aligned_cols=264 Identities=17% Similarity=0.158 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+--+.+++|.+|+|++-+.+. +.+|.. ...++.++++|.++...+ ....+.
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~-----------------n~~~~~ 125 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTAL-----------------NAGGPG 125 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhee-----------------ecCCCc
Confidence 344577777888999999999877553 223333 346777888887654433 211111
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
.++|....|.-++++ ..++.=.| ..+......+++.+++||+.++++.+++. + ++-+ +..+
T Consensus 126 ~~GWgIPmATDIAFA---------lgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~-~~~L---- 187 (423)
T PRK14855 126 ASGWGVPMATDIAFA---------LGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---T-SGLN-LLAL---- 187 (423)
T ss_pred cCccccccHHHHHHH---------HHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---C-CCCC-HHHH----
Confidence 334555444444444 33333322 24556677788999999999988877643 1 1112 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC--ch------
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NF------ 256 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~--~~------ 256 (663)
..+.+.+. ..+++.+ .+.+.....+ ......++.....|+|+.++..+.|+++|.. +.
T Consensus 188 ---~~a~~~~~--~l~~ln~-------~~v~~~~~Y~--~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~ 253 (423)
T PRK14855 188 ---LLAALTWA--LALLAGR-------LGVTSLKIYA--VLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLAS 253 (423)
T ss_pred ---HHHHHHHH--HHHHHHH-------cCCccccHHH--HHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHH
Confidence 11111111 1112221 1222222111 2333466778899999999999999999863 10
Q ss_pred ------------------------------hhHHHhhhhch-hhhhHHHH-HHHhccccChhHHhhhHHHHHHHHHHHHH
Q 006034 257 ------------------------------RTQIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFREWPNVLALLAGLII 304 (663)
Q Consensus 257 ------------------------------~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~~~~~~l~~~~~~~l 304 (663)
.+++++.++|. ..+.+|+| |...|..++-.. .. +..+.+++.+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--pv~lGI~~GLvv 330 (423)
T PRK14855 254 LLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--TVSLGVFLGLLL 330 (423)
T ss_pred HHHHhhcccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--cHHHHHHHHHHh
Confidence 24566777777 44688988 888898884332 11 344567788899
Q ss_pred HHHHHHHHHHhhc----------CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 305 IKTLIISAIGPRV----------GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 305 ~K~~~~~~~~~~~----------g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
+|+++++..++.. |.+|++-.-.|+.-+-.=++++.++..+++
T Consensus 331 GK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 331 GKPLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999998887652 678888888887444444667777777774
|
|
| >PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-09 Score=111.81 Aligned_cols=269 Identities=22% Similarity=0.255 Sum_probs=149.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccc-c
Q 006034 31 TDVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 103 (663)
Q Consensus 31 ~~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~-~ 103 (663)
+..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++... ++.. +
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~-----------------~n~~~~ 116 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA-----------------FNAGGP 116 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG-----------------G--SST
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe-----------------eecCCC
Confidence 3455677788889999999999877543 333333 34566677777655333 2211 1
Q ss_pred ccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHH
Q 006034 104 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 182 (663)
Q Consensus 104 ~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~ 182 (663)
+..++|....+ |+.+....++.=.+ ..+....-.+++.+++||+.++++.+++.. . +-+ +..+
T Consensus 117 ~~~~GW~IP~A---------TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~-~i~-~~~L-- 180 (378)
T PF06965_consen 117 EAAHGWAIPMA---------TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---D-GIS-LLWL-- 180 (378)
T ss_dssp THHHHTSSSS------------HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHHH--
T ss_pred CcCceEEeccc---------ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---C-CCC-HHHH--
Confidence 12233444433 44444444444332 245556678889999999999988877531 1 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCch------
Q 006034 183 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNF------ 256 (663)
Q Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~------ 256 (663)
+.....+. ..+.++| .+.+..... +......++.....|+|+.++..+.|+++|..+.
T Consensus 181 --~~a~~~~~-----~l~~l~r-------~~v~~~~~Y--~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~ 244 (378)
T PF06965_consen 181 --LLAAAALL-----LLFVLNR-------LGVRSLWPY--LLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREA 244 (378)
T ss_dssp --HHHHHHHH-----HHHHHHH-------TT---THHH--HHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----
T ss_pred --HHHHHHHH-----HHHHHHH-------CCCceehHH--HHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccC
Confidence 11111111 1122222 111111111 1223345667789999999999999999997532
Q ss_pred ---hhHHHhhhhch-hhhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCC
Q 006034 257 ---RTQIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLT 320 (663)
Q Consensus 257 ---~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~ 320 (663)
-+++++.++|. ..+.+|+| |...|..++-..+.. .-+..+.+++..+++|+++++..++.. +.+
T Consensus 245 ~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~ 324 (378)
T PF06965_consen 245 ESPLERLEHALHPWVAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVS 324 (378)
T ss_dssp S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--
T ss_pred CCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCC
Confidence 24788888888 45679999 899999988766432 123334566788899999988777642 567
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHc
Q 006034 321 LQESVRIGLLLSQGGEFAFVVFSLANRL 348 (663)
Q Consensus 321 ~r~~~~~g~~l~~~G~~~lvla~~a~~~ 348 (663)
|++-.-.|..-+-.=++++.++..+++.
T Consensus 325 w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 325 WRHLYGVGLLAGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp GGGGTTHHHHTT--HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777777764444446777777787766
|
NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A. |
| >COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-07 Score=90.45 Aligned_cols=263 Identities=20% Similarity=0.252 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHh----hhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcc-cccccc
Q 006034 35 VLSEWGILFLLFEMGLELSLARLKAL----AKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHS-RSDLVN 107 (663)
Q Consensus 35 ~l~~lgl~lllF~~Glel~~~~l~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~-~~~~~~ 107 (663)
-+.+--..++.+.+|+|++.+.+... ++.+ ...+..+++.|.++... ++. .|...+
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~~-----------------~n~~~p~~~~ 127 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLA-----------------LNAGDPATLE 127 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhhe-----------------eecCChhhhc
Confidence 35555567788889999988766432 2222 33566667777654332 221 122234
Q ss_pred ccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHH
Q 006034 108 IRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLK 186 (663)
Q Consensus 108 ~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~ 186 (663)
||....|.-++. ...++.-++ ..++...-.+++.+++||+-++++.++... . .-+ +..+. .
T Consensus 128 GWaIP~ATDiAF---------AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt--~--~Ls-~~al~----~ 189 (390)
T COG3004 128 GWAIPMATDIAF---------ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT--T--DLS-MAALG----I 189 (390)
T ss_pred CcCcccHHHHHH---------HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc--C--Ccc-HHHHH----H
Confidence 455444444444 444333322 356666777889999999999888776431 1 111 11110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC-----chhhHHH
Q 006034 187 ALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRTQIE 261 (663)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~-----~~~~~i~ 261 (663)
....+.+. . .+++..-++..-+ +++....+..-...|+|..++..+.|+.+|-. +.-|+++
T Consensus 190 a~~~i~vL-----~----~lN~~~v~~l~~Y-----~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~le 255 (390)
T COG3004 190 AALAIAVL-----A----VLNRLGVRRLSPY-----LLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLE 255 (390)
T ss_pred HHHHHHHH-----H----HHHHhCchhhhHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHH
Confidence 11111111 1 1111110111111 12222344455689999999999999999943 3447888
Q ss_pred hhhhch-hhhhHHHH-HHHhccccC---hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHH
Q 006034 262 ADIRPF-RGLLLGLF-FVTTGSSID---IELLFREWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVR 326 (663)
Q Consensus 262 ~~~~~~-~~~~~plF-Fv~vG~~l~---~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~ 326 (663)
+.+.|. .-+.+|+| |...|.++. ...+.+ +..+.+++..+++|+++++..++.. |.+|++-..
T Consensus 256 h~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~ 333 (390)
T COG3004 256 HALHPWVAFFILPLFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYG 333 (390)
T ss_pred HHhhhhHHHHHHHHHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHH
Confidence 888887 46788888 888888876 333332 3345567788899999998888653 667888777
Q ss_pred HHHhhhhhhhHHHHHHHHHHHc
Q 006034 327 IGLLLSQGGEFAFVVFSLANRL 348 (663)
Q Consensus 327 ~g~~l~~~G~~~lvla~~a~~~ 348 (663)
.++.-+-.=++++.++..+++.
T Consensus 334 v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 334 VSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred HHHHHhhhHHHHHHHHHHhcCC
Confidence 7774344445666777777654
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.4e-07 Score=83.57 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++|+|+|++|...++.|. +.|.+|++|+ |+..+++.+.+. +. .+.+.++++++++++.|+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll----------~~ga~V~VIs--p~~~~~l~~l~~--i~---~~~~~~~~~dl~~a~lVi 75 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLK----------DTGAFVTVVS--PEICKEMKELPY--IT---WKQKTFSNDDIKDAHLIY 75 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEc--CccCHHHHhccC--cE---EEecccChhcCCCceEEE
Confidence 467999999999999999997 7899999995 555555554321 11 245778888999999999
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q 006034 483 IMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~ 501 (663)
++|+||+.|..++..+|+.
T Consensus 76 aaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 76 AATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ECCCCHHHHHHHHHHHHHC
Confidence 9999999999999999885
|
|
| >KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.5e-07 Score=98.88 Aligned_cols=313 Identities=14% Similarity=0.134 Sum_probs=189.4
Q ss_pred chhHHHHHHHHHHhccC--CCc-CCchhH--HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 006034 8 RSQILGFFFAGIVLNQL--GII-RNLTDV--KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAF 82 (663)
Q Consensus 8 lP~ivg~ilaGillGp~--glv-~~~~~l--~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (663)
+|.-.-.|+.|+++|-. +.- .....+ +.+--.-+--++|.+|+-+.-+.+-.+..+++..++++.+..++...+.
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~s 147 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGAS 147 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 57777788888888862 211 111122 2233344556889999999999999999999999999998866554433
Q ss_pred hCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHH
Q 006034 83 ELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLL 162 (663)
Q Consensus 83 ~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l 162 (663)
.+ |... ...++.. .+...-+++|...|+.+|+.+..+..|.+. |.-.=-++.|++++||.+.+++.
T Consensus 148 L~------~i~~-~glf~~~------~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY 213 (670)
T KOG1966|consen 148 LY------AISL-SGLFGMS------IGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLY 213 (670)
T ss_pred HH------HHHH-hhhcCCC------chHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehH
Confidence 21 1111 1223311 357788999999999999999999999885 33333457799999999998887
Q ss_pred HHHHHhhhcCCCch-----hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 163 VILPVLESQVSESV-----WPMLVKESL-KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 163 ~i~~~~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
-+...+..-++.+. .... ..+. -.+++. +++++..++..-..++..+.+.-| ..+++++...++..+|.+
T Consensus 214 ~~f~sf~~ig~~n~~~~d~~~G~-~sFfVVslGG~-lvGivfafl~sl~tkft~~vrvie--Pvfif~~pYlaYL~aEm~ 289 (670)
T KOG1966|consen 214 NMFISFVEIGSDNLTTIDYVLGV-VSFFVVSLGGA-LVGIVFAFLASLVTKFTKHVRVLE--PVFIFLLPYLAYLTAEMF 289 (670)
T ss_pred HHHHHHHHhcccceeEeeeecce-eEEEEEecCch-hHHHHHHHHHHHHHHhhcceeeec--chhhhhHHHHHHHHHHHH
Confidence 66655544322110 0000 0111 111222 222222233332333322222222 245566677788899999
Q ss_pred CCcHHHHHHHhhhhccCC---chhhHHHhhhh----chhhhhHHHHHHHhccccChhHHhhhH--HHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAET---NFRTQIEADIR----PFRGLLLGLFFVTTGSSIDIELLFREW--PNVLALLAGLIIIKT 307 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~---~~~~~i~~~~~----~~~~~~~plFFv~vG~~l~~~~l~~~~--~~~l~~~~~~~l~K~ 307 (663)
++|++++-.+.|++.... ..+++...... .+...-.++-|+++|.+.-=. .+.| ..+..-++..++.|.
T Consensus 290 hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~ 367 (670)
T KOG1966|consen 290 HLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRA 367 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHH
Confidence 999999999999999864 22333332222 234567778899999875332 2333 334444555667788
Q ss_pred HHHHHHHhhc------CCChHHHHHHHHhhhhhhhHHHHH
Q 006034 308 LIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVV 341 (663)
Q Consensus 308 ~~~~~~~~~~------g~~~r~~~~~g~~l~~~G~~~lvl 341 (663)
+++...+++. +++..+-+.++.+ +-||.+++.+
T Consensus 368 lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~L 406 (670)
T KOG1966|consen 368 IGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGL 406 (670)
T ss_pred HHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeE
Confidence 8877777653 4556666665553 4566555444
|
|
| >PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0015 Score=70.61 Aligned_cols=291 Identities=19% Similarity=0.134 Sum_probs=148.6
Q ss_pred CchhHHHHHHHHHHhccCCCc--C-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 006034 7 CRSQILGFFFAGIVLNQLGII--R-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFE 83 (663)
Q Consensus 7 ~lP~ivg~ilaGillGp~glv--~-~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (663)
.+|+++-.++.|+++.++|++ + ..+.-+.+.+..+-+-++..=++.|+++++|.+++.+..=..+.+.+.+.. .+
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~-~v- 101 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA-VV- 101 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH-HH-
Confidence 578999999999999999988 3 235667788888777777777888999999998887654444333333222 22
Q ss_pred CCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHH--H-hhcCCCCChhHHHHHHHHHHHHHHHHH
Q 006034 84 LPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQL--L-AEKGELPTRFGSATLGILLLQDIAVVP 160 (663)
Q Consensus 84 ~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~i--l-~~~~~~~~~~g~~~l~~~~~~Di~~i~ 160 (663)
++.+++... ..+..-++..++.|-.+=.... + +-++. + ....-.....|+++.-+
T Consensus 102 -----------a~~l~~~~l-------~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~---~-~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 102 -----------AFLLFGGFL-------GPEGWKIAGMLAGSYIGGSVNFVAVAEALGV---S-DSLFAAALAADNVVMAL 159 (378)
T ss_pred -----------HHHHHhhcc-------cchHHHHHHHHHhcccCchhHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHH
Confidence 123343210 0112222223332222211111 1 11222 1 23333334445555444
Q ss_pred HHHHHHHhhhcCC-----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHH--HHHHHHHHHHHHH
Q 006034 161 LLVILPVLESQVS-----ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARS-SEAFV--ALCLLTVAGTSLL 232 (663)
Q Consensus 161 ~l~i~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~e~~~--~~~l~~~~~~~~l 232 (663)
.+.++..+..... ......- .. .. ..-..+.- ....+... .+... ...+.++.....+
T Consensus 160 ~~~~l~~l~~~~~~~~~~~~~~~~~-~~---~~---------~~~~~~~~-~~~~~~~~~~~l~~~la~a~~v~~~s~~l 225 (378)
T PF05684_consen 160 WFAFLLALPPFARKFDRWTKADTSS-IE---AL---------EEEIEAEE-AEWARKPISQDLAFLLAVAFAVVALSHAL 225 (378)
T ss_pred HHHHHHHHhhhhHHhhhccCCCccc-cc---hh---------hhhhhhhh-hccccCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 4444333322000 0000000 00 00 00000000 00000000 11111 1111111122223
Q ss_pred HHHh-----CC----cHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHH
Q 006034 233 TQKL-----GF----SDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLI 303 (663)
Q Consensus 233 ~~~~-----G~----s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~ 303 (663)
++.+ +. -.++-....|++.+.++..+.+ +--+++..+++-+||..+|+..|+..+.+ -+..+.+.++.+
T Consensus 226 a~~l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l 303 (378)
T PF05684_consen 226 AAWLPPLFAGISSSTWLILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIIL 303 (378)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHH
Confidence 3333 11 1233445566666655555444 55566778899999999999999999987 444555666677
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHH
Q 006034 304 IIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 339 (663)
Q Consensus 304 l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~l 339 (663)
.+..+..+..+++++.|..+....+- +..|..+-
T Consensus 304 ~iH~~l~l~~~kl~k~~l~~~~vAS~--AnIGGpaT 337 (378)
T PF05684_consen 304 AIHLLLMLILGKLFKIDLFELLVASN--ANIGGPAT 337 (378)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHhh--cccCCcch
Confidence 88888899999999999988776664 34444433
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.2e-05 Score=70.32 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=80.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++++|.| +|..+++.|. +.|++|+.+|.|++.++.+++.+.+++.+|..+++.=- -++||.+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~----------~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~---y~~a~liy 82 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLK----------ESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI---YKNAKLIY 82 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH---HhcCCEEE
Confidence 3579999999 9999999998 78999999999999999999999999999999876432 25789888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
..-.-.|---.+...||+.+.++-+.-..++
T Consensus 83 sirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 83 SIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 7777777777788889999877555444444
|
|
| >PRK12460 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=68.18 Aligned_cols=278 Identities=17% Similarity=0.147 Sum_probs=150.9
Q ss_pred HHHHHHHHHhccC--CCcC--C--chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 006034 12 LGFFFAGIVLNQL--GIIR--N--LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELP 85 (663)
Q Consensus 12 vg~ilaGillGp~--glv~--~--~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (663)
+-.++.|.+++.+ +..+ . ...++.=+.--+..++|-.|.++|++...+..|+...+...-+.+.+++...+
T Consensus 16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~--- 92 (312)
T PRK12460 16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLV--- 92 (312)
T ss_pred HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHH---
Confidence 4567788888743 1111 0 11121112234678899999999999887777777777666777766655444
Q ss_pred CCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006034 86 PNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 165 (663)
Q Consensus 86 ~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~ 165 (663)
..++|.. ++---..+.+-++.+.|--+.=..+..|+|. +++.| +..++++
T Consensus 93 ----------~~~~g~~-----g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~-~~d~g-------------A~~~~sl- 142 (312)
T PRK12460 93 ----------GKFFGAE-----GIFGLSGLAIVAAMSNSNGGLYAALMGEFGD-ERDVG-------------AISILSL- 142 (312)
T ss_pred ----------HHHcCcc-----cccchHHHHHHHHHhcCcHHHHHHHHHHcCC-Hhhhh-------------HHhhhhh-
Confidence 2455521 1111233444455555666666677777773 33322 2222222
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 006034 166 PVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAF 245 (663)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAf 245 (663)
. +++..+.+ .++. .++ ..+ ... . +.+.+=++
T Consensus 143 ---~---~GPf~tm~---------aLga-----~gL-A~i----------p~~---~---------------lv~lilpI 173 (312)
T PRK12460 143 ---N---DGPFFTML---------ALGA-----AGL-ANI----------PIM---A---------------LVAALLPL 173 (312)
T ss_pred ---c---cCcHHHHH---------HHHH-----HHH-hcC----------ChH---H---------------HHHHHHHH
Confidence 1 11111110 0000 001 000 000 0 01123366
Q ss_pred HhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 006034 246 LAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESV 325 (663)
Q Consensus 246 laGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~g~~~r~~~ 325 (663)
+.|++++|.+ ++..+..++-..+.+|+|-+..|+++|++++.+.....+.+.+..++.-....++..+++|.+.+.+.
T Consensus 174 LiGmilGNld--~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~ 251 (312)
T PRK12460 174 VLGMILGNLD--PDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGA 251 (312)
T ss_pred HHHHHHhccc--hhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 8899999853 23556666666679999999999999999997753334444444555566667777788888888877
Q ss_pred HHH--HhhhhhhhHHHHHHHHHHHcCCCch--hhHHH-HHHHHHHHHhhhHHHHHHhH
Q 006034 326 RIG--LLLSQGGEFAFVVFSLANRLGVLPL--ELNKL-LIIVVVLSMALTPLLNEIGR 378 (663)
Q Consensus 326 ~~g--~~l~~~G~~~lvla~~a~~~g~i~~--~~~~~-lv~~vvlt~ii~pi~~~~~~ 378 (663)
.++ .+-+.-| -+ .++.-...+.+ +..+. +-.++++|.+++|++..+..
T Consensus 252 li~stAGnAIcg-pA----AVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 252 AASSTAGNAVAT-PL----AIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred HHHHHhhHHHHH-HH----HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 2211111 11 12222222222 22233 34456778899999876543
|
|
| >PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0026 Score=65.39 Aligned_cols=286 Identities=17% Similarity=0.187 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHhccC--CCcC---C-chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 006034 10 QILGFFFAGIVLNQL--GIIR---N-LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFE 83 (663)
Q Consensus 10 ~ivg~ilaGillGp~--glv~---~-~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (663)
..+-.++.|.++..+ +..+ . ...+..=+.--+.+++|-.|.++|++...+..||...+.+.-++++++++..+
T Consensus 14 ~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~- 92 (314)
T PF03812_consen 14 MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLV- 92 (314)
T ss_pred eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-
Confidence 355667788888753 2211 1 11111223445678899999999999999988888888888888877765554
Q ss_pred CCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 006034 84 LPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLV 163 (663)
Q Consensus 84 ~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~ 163 (663)
..++|...-..+.+--..++.+-++++.+-.++=..+..|++. +++.| +.+...++|.= +++
T Consensus 93 ------------~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~g--A~~i~sl~~GP---f~t 154 (314)
T PF03812_consen 93 ------------GKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVG--AFSILSLNDGP---FFT 154 (314)
T ss_pred ------------HHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhH--HHHHHHhhhhH---HHH
Confidence 3455522100000111244555566666777877888888774 33322 22222222211 111
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 006034 164 ILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLG 243 (663)
Q Consensus 164 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lg 243 (663)
++. ++ ..+.--+++. .+. ..+=
T Consensus 155 Ml~------------------------LG---~sG~a~ip~~----------------~lv---------------~~ll 176 (314)
T PF03812_consen 155 MLA------------------------LG---ASGLANIPWM----------------SLV---------------AALL 176 (314)
T ss_pred HHH------------------------Hh---hccccCCCHH----------------HHH---------------HHHH
Confidence 100 00 0000001110 000 0122
Q ss_pred HHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChH
Q 006034 244 AFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPR-VGLTLQ 322 (663)
Q Consensus 244 AflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~-~g~~~r 322 (663)
.++.|+++.|.+ +++.+.+.+-...++|+|-..+|..+|+..+.+.-...+++-+..++.-....++.-++ .|-+..
T Consensus 177 P~iiG~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~~g~ 254 (314)
T PF03812_consen 177 PIIIGMILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKGNGV 254 (314)
T ss_pred HHHHHHHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCCCCc
Confidence 567889999864 56777888888899999999999999999987642222222222223333334444444 233322
Q ss_pred HHHHHHHhhhhhhhHHHHH-HHHHHHcCCCch---hhHHHHHHHHHHHHhhhHHHHHHhH
Q 006034 323 ESVRIGLLLSQGGEFAFVV-FSLANRLGVLPL---ELNKLLIIVVVLSMALTPLLNEIGR 378 (663)
Q Consensus 323 ~~~~~g~~l~~~G~~~lvl-a~~a~~~g~i~~---~~~~~lv~~vvlt~ii~pi~~~~~~ 378 (663)
. |+..+..+.-+... +.++.....+.+ .--..+...+++|.+++|++..+..
T Consensus 255 a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 255 A----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred e----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222222222221 222222222222 2223344556779999999876544
|
There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.88 E-value=5e-05 Score=74.93 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=79.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++++|.|+|++|+.+++.|. +.|++|++.|.|+++.+.+.+. +...+ |. ++.+ ..++|.++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~----------~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~--~~l~----~~~~Dv~v 90 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLL----------EEGAKLIVADINEEAVARAAELFGATVV--AP--EEIY----SVDADVFA 90 (200)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc--hhhc----cccCCEEE
Confidence 57999999999999999998 7899999999999998887764 43322 22 2333 23799777
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC----hhhHHHHHHcCCCeEEcCc
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD----MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~----~~~~~~l~~~Gad~vi~p~ 532 (663)
-+... |+.....+++++++ .|+..+|+ +++.+.|++.|+.. .|.
T Consensus 91 p~A~~---~~I~~~~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~--~Pd 138 (200)
T cd01075 91 PCALG---GVINDDTIPQLKAK-AIAGAANNQLADPRHGQMLHERGILY--APD 138 (200)
T ss_pred ecccc---cccCHHHHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCEE--eCc
Confidence 44433 45555567888776 78889998 89999999999853 454
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.8e-05 Score=75.09 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=69.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|+|++|...++.|. +.|.+|++|+.+.. ..+.+.+.+. +.+ ++..++++++.++|.|
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll----------~~ga~V~VIs~~~~~~l~~l~~~~~-i~~----~~~~~~~~~l~~adlV 74 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLL----------KYGAHIVVISPELTENLVKLVEEGK-IRW----KQKEFEPSDIVDAFLV 74 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEcCCCCHHHHHHHhCCC-EEE----EecCCChhhcCCceEE
Confidence 468999999999999999997 78899999987652 2344444332 221 2235557788999999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
+++|+|++.|..++..+++ + ..+-.+.+++..
T Consensus 75 iaaT~d~elN~~i~~~a~~-~---~lvn~~d~~~~~ 106 (202)
T PRK06718 75 IAATNDPRVNEQVKEDLPE-N---ALFNVITDAESG 106 (202)
T ss_pred EEcCCCHHHHHHHHHHHHh-C---CcEEECCCCccC
Confidence 9999999999999988854 2 234455555543
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.4e-05 Score=70.55 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=67.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-++++|+|||+.|+.+|+.|+ ..|.+|+|.|.||-+.-++..+|+++.. ++++ ++++|.++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr----------~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a-~~~adi~v 83 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALR----------GLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEA-LRDADIFV 83 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHH----------HTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHH-TTT-SEEE
T ss_pred CCEEEEeCCCcccHHHHHHHh----------hCCCEEEEEECChHHHHHhhhcCcEecC--------HHHH-HhhCCEEE
Confidence 457999999999999999998 8999999999999998888888998763 3332 56899888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEec---ChhhHHHHHHcCC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ---DMMHLLDLKKAGA 525 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~---~~~~~~~l~~~Ga 525 (663)
.+|++ .++......+++..+ -+++.+- ++-+.+.+++.+.
T Consensus 84 taTG~--~~vi~~e~~~~mkdg-ail~n~Gh~d~Eid~~~L~~~~~ 126 (162)
T PF00670_consen 84 TATGN--KDVITGEHFRQMKDG-AILANAGHFDVEIDVDALEANAV 126 (162)
T ss_dssp E-SSS--SSSB-HHHHHHS-TT-EEEEESSSSTTSBTHHHHHTCTS
T ss_pred ECCCC--ccccCHHHHHHhcCC-eEEeccCcCceeEeeccccccCc
Confidence 88887 344445567777544 5666543 4445556666643
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00055 Score=67.74 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=68.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|+|++|..-++.|. +.|.+|+||+.+.. ..+.+.+. ...++.++....+ +++++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll----------~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~d------l~~~~l 72 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLL----------KAGAQLRVIAEELESELTLLAEQGGITWLARCFDADI------LEGAFL 72 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHH------hCCcEE
Confidence 358999999999999999997 78999999988764 34455544 4667778776432 467999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
|+++|+|++.|..++..+|+.+
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARG 94 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999875
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00055 Score=68.30 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh----------HHHHHHHhcCCCEE--EecCCCHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP----------SVVKESRKLGFPIL--YGDASRPA 468 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~----------~~~~~~~~~~~~vi--~GD~~~~~ 468 (663)
...+++|.|+|++|+.+++.|. +.|. .|.+.|.|. +..+...+.+.... .+|..+.+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~----------~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLA----------EEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 3468999999999999999998 5655 566789988 77776665432222 13444444
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec---ChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ---DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~---~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.+. .. ++|.++-+...+.. ....++++.++ .|+..+| +++..+.|++-| .++.|..
T Consensus 92 ~l~--~~-~~DVlipaA~~~~i---~~~~a~~l~a~-~V~e~AN~p~t~~a~~~L~~~G--i~v~Pd~ 150 (217)
T cd05211 92 AIL--GL-DVDIFAPCALGNVI---DLENAKKLKAK-VVAEGANNPTTDEALRILHERG--IVVAPDI 150 (217)
T ss_pred cce--ec-cccEEeeccccCcc---ChhhHhhcCcc-EEEeCCCCCCCHHHHHHHHHCC--cEEEChH
Confidence 443 33 89988888776544 44566777544 4555888 788999999999 4778984
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=68.46 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=75.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC----HHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~----~~~L~~a~i~~a~~ 480 (663)
+|.|+|.|.+|..++..|. +.|++|.++++++++.+.+.+.+..+-.|+.+. .+...+ ++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~ 69 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA----------QAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE--LGPQDL 69 (304)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH--cCCCCE
Confidence 5899999999999999997 678999999999999888887665441222110 011222 378999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~ 522 (663)
+++++......-.+....+.+.++..++...|...+.+.+++
T Consensus 70 vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 70 VILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred EEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 999998875544444455556666678888887766666555
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=62.59 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=74.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.+|-++|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+... -.+-.|..++ +|.++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~----------~~g~~v~~~d~~~~~~~~~~~~g~~~---~~s~~e~~~~-----~dvvi~ 63 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLA----------KAGYEVTVYDRSPEKAEALAEAGAEV---ADSPAEAAEQ-----ADVVIL 63 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHH----------HTTTEEEEEESSHHHHHHHHHTTEEE---ESSHHHHHHH-----BSEEEE
T ss_pred CEEEEEchHHHHHHHHHHHH----------hcCCeEEeeccchhhhhhhHHhhhhh---hhhhhhHhhc-----ccceEe
Confidence 36889999999999999997 78999999999999999999887222 2344445544 498999
Q ss_pred EcCCHHHHHHHHHH---HHHhCCCCcEEEEecC--h----hhHHHHHHcCCCeEEcCc
Q 006034 484 MYTDKKRTIEAVQR---LRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 484 ~~~dd~~n~~~~~~---~r~~~~~~~iia~~~~--~----~~~~~l~~~Gad~vi~p~ 532 (663)
+..|++.-..+... +..+.++ +++.-.++ + +..+.+.+.|+..+=.|-
T Consensus 64 ~v~~~~~v~~v~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 64 CVPDDDAVEAVLFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp -SSSHHHHHHHHHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ecccchhhhhhhhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 99987654444443 4444444 66665553 3 344556677887776664
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR00793 kdgT 2-keto-3-deoxygluconate transporter | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.027 Score=57.70 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=72.0
Q ss_pred HHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhc-CCCh
Q 006034 244 AFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRV-GLTL 321 (663)
Q Consensus 244 AflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~~~~-g~~~ 321 (663)
.++.|+++.|-+ +++.+.+.+-...++|+|-+.+|..+|++.+.+. ...++ +-+..++.--...++.-++. |.+.
T Consensus 177 PlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIl-LGl~v~~vtG~~~~~~dr~~~g~~g 253 (314)
T TIGR00793 177 PFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGIL-LGVSVIILTGIPLILADKFIGGGDG 253 (314)
T ss_pred HHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHH-HHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 567889999864 4566777777889999999999999999998664 32222 21222333333445555555 3232
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHcCCCch--hhHHH-HHHHHHHHHhhhHHHHHHhH
Q 006034 322 QESVRIGLLLSQGGEFAFVVFSLANRLGVLPL--ELNKL-LIIVVVLSMALTPLLNEIGR 378 (663)
Q Consensus 322 r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~--~~~~~-lv~~vvlt~ii~pi~~~~~~ 378 (663)
.-.+..+. .-|--...=+.++.....+.+ +..+. +-.++++|.++.|++..+..
T Consensus 254 ~aG~A~ss---tAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~ 310 (314)
T TIGR00793 254 TAGIAASS---SAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWS 310 (314)
T ss_pred chhhHHHH---HHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332 222222222233332222222 22233 33456778899999876543
|
This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=56.63 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|+.|..=++.|. +.|.+++++..+.+..+ ....+. .+.. + ..+++++.|
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll----------~~gA~v~vis~~~~~~~----~~i~~~-~~~~-----~-~~l~~~~lV 64 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLL----------EAGAKVTVISPEIEFSE----GLIQLI-RREF-----E-EDLDGADLV 64 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHC----------CCTBEEEEEESSEHHHH----TSCEEE-ESS------G-GGCTTESEE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCchhhhh----hHHHHH-hhhH-----H-HHHhhheEE
Confidence 3468999999999999999997 88999999998862222 233333 2222 2 447889999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM 515 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~ 515 (663)
+++++|.+.|-.+...+|+.+ ..+-.+++++
T Consensus 65 ~~at~d~~~n~~i~~~a~~~~---i~vn~~D~p~ 95 (103)
T PF13241_consen 65 FAATDDPELNEAIYADARARG---ILVNVVDDPE 95 (103)
T ss_dssp EE-SS-HHHHHHHHHHHHHTT---SEEEETT-CC
T ss_pred EecCCCHHHHHHHHHHHhhCC---EEEEECCCcC
Confidence 999999999999999999875 2344444444
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0045 Score=64.56 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=83.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.++++++.+.+.+.+...+. .+-+.+ -++++|.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~----------~~G~~V~v~~R~~~~~~~~~~~g~~~~~-----~~~l~~-~l~~aDiVi 214 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFS----------ALGARVFVGARSSADLARITEMGLIPFP-----LNKLEE-KVAEIDIVI 214 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeeec-----HHHHHH-HhccCCEEE
Confidence 358999999999999999997 7889999999999887776665544332 222332 356899888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh--hHHHHHHcCCCeEEcC-------chHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM--HLLDLKKAGATDAILE-------NAETSLQLGSKLL 544 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~--~~~~l~~~Gad~vi~p-------~~~~~~~la~~~~ 544 (663)
.+++....| ....+.+.++.-++=.+.++. .-+..++.|+..+..| ...+|+.+++.+.
T Consensus 215 nt~P~~ii~---~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~~~ 282 (287)
T TIGR02853 215 NTIPALVLT---ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVLS 282 (287)
T ss_pred ECCChHHhC---HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHHHH
Confidence 888754222 223445555544555555542 2478899999998766 4455556655543
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG3400 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00064 Score=69.88 Aligned_cols=190 Identities=13% Similarity=0.045 Sum_probs=125.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc-CCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA-GITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a-~i~~a~~v 481 (663)
+.++|+|-|..++...+.+..- .+.+.=.++++.|.+....... +-+...+-|+|+.+.|++. +-+..+++
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~-------~~~~~f~~vv~~~qe~~~~~~~~e~~~fh~fdaTs~~rl~~~~n~~~~~Af 74 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRH-------YSNHNFYIVVVKNQESLIPKNYPETFAFHCFDATSSFRLLQVLNDEVSDAF 74 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHH-------hcCceEEEEEeechhhcccccCcceEEEEEeCCccHHHHHHHhhhHhhhhh
Confidence 4689999999999998877520 1344557788888776554332 3467788999999988764 66666766
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCc--EEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIP--IYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 559 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~--iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~ 559 (663)
+ ..-|-+++..+...+|..+++.. ++...+..++-+..++..+|.+=.|+ .+++..+..+ -.
T Consensus 75 i-~~qd~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~lid~~~-----vL~~~F~~~L----------p~ 138 (471)
T COG3400 75 I-IIQDFKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLILIDEFE-----VLANKFISRL----------PN 138 (471)
T ss_pred e-ehhhHHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhcccceeecchHH-----HHHHHHHHhc----------CC
Confidence 4 45556788899999999988754 66777766777777888887665554 3443333211 00
Q ss_pred HHhcccccchhhhcccCCcchhcccccccchhhhhhhccCCCCCCCcccc------------------cCCCCCCCCcCC
Q 006034 560 LVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKTIPSTSNDDK------------------LSREDNTDTAGE 621 (663)
Q Consensus 560 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~ 621 (663)
+ ..+-.+.+.+.+|+.|-.....|+.+=+. -..+|.++.++|
T Consensus 139 I--------------------~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~qk~~RIvl~YRN~klll~~~slvlq 198 (471)
T COG3400 139 I--------------------PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYRIVLLYRNDKLLLSTKSLVLQ 198 (471)
T ss_pred c--------------------cccchhcccccceEEEEecCCCchhhhhhhhhhhhheeEEEEEEECCEEEEeccceEec
Confidence 0 12223445555555555555555544111 123468999999
Q ss_pred CCCCceEEEeecCCC
Q 006034 622 DAKGVLYCELNGTNN 636 (663)
Q Consensus 622 ~~d~~~~~~~~~~~~ 636 (663)
|||++|-.|.+..-+
T Consensus 199 p~D~lLVvG~P~~ln 213 (471)
T COG3400 199 PRDILLVVGNPEILN 213 (471)
T ss_pred CCCEEEEeCChHHHH
Confidence 999999999887544
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0043 Score=61.80 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++|+|+|+++..=++.|. +.|.+|+||-. +++-.+...+....++..+.... .++.++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll----------~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~------dl~g~~ 87 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFL----------KKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE------FIKDKH 87 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCc
Confidence 3458999999999999888887 78899999954 44433333334466666555432 246789
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.|+++|+|.+.|-.++..+|+.+ ..+..+.+++.
T Consensus 88 LViaATdD~~vN~~I~~~a~~~~---~lvn~vd~p~~ 121 (223)
T PRK05562 88 LIVIATDDEKLNNKIRKHCDRLY---KLYIDCSDYKK 121 (223)
T ss_pred EEEECCCCHHHHHHHHHHHHHcC---CeEEEcCCccc
Confidence 99999999999999999999875 22334444443
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=61.44 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
|+|+|. |.+|+.++++|. +++++|+++-+++++.+. ..+.+++.||..|++.++++ ++++|+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~----------~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~a-l~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLL----------RRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAA-LKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHH-HTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHH----------HCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhh-hhhcchhhhh
Confidence 688996 999999999998 788999999999998887 67899999999999988774 3489999888
Q ss_pred cCC---H-HHHHHHHHHHHHhCCCCcEEE
Q 006034 485 YTD---K-KRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 485 ~~d---d-~~n~~~~~~~r~~~~~~~iia 509 (663)
.+. | .....++..+++.+.+ +++.
T Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~-~~v~ 95 (183)
T PF13460_consen 68 AGPPPKDVDAAKNIIEAAKKAGVK-RVVY 95 (183)
T ss_dssp CHSTTTHHHHHHHHHHHHHHTTSS-EEEE
T ss_pred hhhhcccccccccccccccccccc-ccee
Confidence 873 3 2233344555665544 4443
|
... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=69.14 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..+++|+|+|++|+..++.+. ..|.+|+++|+++++.+.+.+..-..+..+..+++.+.++ +.++|.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~----------~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI 235 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMAN----------GLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLI 235 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEE
Confidence 345999999999999999997 7888999999999998887654323344556677777665 77999888
Q ss_pred EEc---CCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMY---TDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~---~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
.++ +.+..++......+.+.|+..++-.+-+
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 776 3333444445666777777445544433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0078 Score=64.75 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=86.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.+++|+|+|++|+.+|+.|. +++ .+|.+.|+++++++++.+. ......=|+.|.+.|.++ +++.|
T Consensus 2 ~~ilviGaG~Vg~~va~~la----------~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA----------QNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHH----------hCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH-HhcCC
Confidence 46999999999999999997 444 8999999999999999775 488999999999988765 55669
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh----hHHHHHHcCCCeEEc
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM----HLLDLKKAGATDAIL 530 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~----~~~~l~~~Gad~vi~ 530 (663)
.||.+.+-. .+..+...+-+.+. +.+-.+++++ ..+..+++|+..+..
T Consensus 71 ~VIn~~p~~-~~~~i~ka~i~~gv--~yvDts~~~~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 71 LVINAAPPF-VDLTILKACIKTGV--DYVDTSYYEEPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred EEEEeCCch-hhHHHHHHHHHhCC--CEEEcccCCchhhhhhHHHHHcCeEEEcc
Confidence 888888764 45555656666653 3444444433 577888999877654
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.004 Score=66.01 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=59.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|.|. |.+|+.+++.|. ++|++|+++.+++++.+.+...+..++.||.+|++.++++ ++.+|+|+-
T Consensus 2 kIlVtGatG~iG~~lv~~Ll----------~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~ 70 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQAL----------DEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIID 70 (317)
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEE
Confidence 5888985 999999999998 7899999999998877666667899999999999998765 456788876
Q ss_pred Ec
Q 006034 484 MY 485 (663)
Q Consensus 484 ~~ 485 (663)
+.
T Consensus 71 ~~ 72 (317)
T CHL00194 71 AS 72 (317)
T ss_pred CC
Confidence 54
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0043 Score=67.69 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=80.0
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
|+|+|+|.+|+.+++.|.+ .... ++++.|+|+++.+.+.+ .......-|.+|++.|+++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~---------~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLAR---------RGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHC---------TTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhc---------CCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 6899999999999999982 4444 89999999999988864 4688899999999998887 888898
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec-----ChhhHHHHHHcCCCeEEc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-----DMMHLLDLKKAGATDAIL 530 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-----~~~~~~~l~~~Gad~vi~ 530 (663)
||-+.+.. .|..++..+-+.+.+ .+- .. ..+..+..++.|...++.
T Consensus 71 Vin~~gp~-~~~~v~~~~i~~g~~--yvD-~~~~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 71 VINCAGPF-FGEPVARACIEAGVH--YVD-TSYVTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp EEE-SSGG-GHHHHHHHHHHHT-E--EEE-SS-HHHHHHHCHHHHHHTTSEEE-S
T ss_pred EEECCccc-hhHHHHHHHHHhCCC--eec-cchhHHHHHHHHHHHHhhCCEEEeC
Confidence 88887764 677788888888643 332 22 234556667778866654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=70.52 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=83.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-------------CEEEEeCChHHHHHHHhc--CCCEEEecCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-------------PFVAFDLNPSVVKESRKL--GFPILYGDASR 466 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-------------~vvvid~d~~~~~~~~~~--~~~vi~GD~~~ 466 (663)
..++|+|+|.|++|+..++.|.+ ..+. .|.+.|.++++++.+.+. +...+.-|.+|
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~---------~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D 638 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLAS---------VKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSD 638 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHh---------CcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCC
Confidence 46789999999999999999963 3333 389999999999887762 57789999999
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH----HHHHHcCCC
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL----LDLKKAGAT 526 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~----~~l~~~Gad 526 (663)
.+-|.++ ++++|+||.+++.. .+..++..|-+.+.+ ++..-.+.+.. +..+++|+.
T Consensus 639 ~e~L~~~-v~~~DaVIsalP~~-~H~~VAkaAieaGkH--vv~eky~~~e~~~L~e~Ak~AGV~ 698 (1042)
T PLN02819 639 SESLLKY-VSQVDVVISLLPAS-CHAVVAKACIELKKH--LVTASYVSEEMSALDSKAKEAGIT 698 (1042)
T ss_pred HHHHHHh-hcCCCEEEECCCch-hhHHHHHHHHHcCCC--EEECcCCHHHHHHHHHHHHHcCCE
Confidence 9988764 55699999999984 678888888888754 44443443333 344556653
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0061 Score=52.24 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=57.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC---CCEEEE-eCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAF-DLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~---~~vvvi-d~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.++|+|++|..+++.|. +.| .++.++ ++++++.+++.++ +..+... ++.++.+ ++|
T Consensus 1 kI~iIG~G~mg~al~~~l~----------~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLL----------ASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD--DNEEAAQ-----EAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHH----------HTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE--EHHHHHH-----HTS
T ss_pred CEEEECCCHHHHHHHHHHH----------HCCCCceeEEeeccCcHHHHHHHHHhhccccccC--ChHHhhc-----cCC
Confidence 3678999999999999997 667 889977 9999999998764 3333332 3555654 778
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.++++.......-..... +...++ +++.
T Consensus 64 vvilav~p~~~~~v~~~i-~~~~~~-~~vi 91 (96)
T PF03807_consen 64 VVILAVKPQQLPEVLSEI-PHLLKG-KLVI 91 (96)
T ss_dssp EEEE-S-GGGHHHHHHHH-HHHHTT-SEEE
T ss_pred EEEEEECHHHHHHHHHHH-hhccCC-CEEE
Confidence 888888875432222222 445445 4443
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.065 Score=55.49 Aligned_cols=139 Identities=19% Similarity=0.329 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCcHHHHHHHhhhhccCCchh-hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHH
Q 006034 228 GTSLLTQKLGFSDTLGAFLAGAILAETNFR-TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIK 306 (663)
Q Consensus 228 ~~~~l~~~~G~s~~lgAflaGl~l~~~~~~-~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K 306 (663)
....+++.++++..++-.++|++++..-.+ -+-.+.++.+.++-..++....|+++|++.+.+++.....+....++.-
T Consensus 6 ~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~ 85 (273)
T TIGR00932 6 LAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVP 85 (273)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999865211 0111345556677788888999999999999877655444433344443
Q ss_pred -HHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q 006034 307 -TLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMA 368 (663)
Q Consensus 307 -~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~i 368 (663)
.+..+...+..+.++.+++.+|..+++-. .-+...+..+.+..+.+....++...+++=+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~ 146 (273)
T TIGR00932 86 GVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDI 146 (273)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHH
Confidence 33344456678999999999998777653 2333444455666565554444444444333
|
|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.2 Score=47.51 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=75.7
Q ss_pred ccCchhHHHHHHHHHHhccC---CCcCC-chhHH----HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 5 ILCRSQILGFFFAGIVLNQL---GIIRN-LTDVK----VLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 5 rl~lP~ivg~ilaGillGp~---glv~~-~~~l~----~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+.++++.+--++.|+++++. +..+. .+.++ .+-++|+++ .|.+++++++.+.+.+.+......+..++
T Consensus 28 ~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~ 103 (335)
T TIGR00698 28 DPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTF 103 (335)
T ss_pred cCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45788888889999999972 22111 22333 566777665 59999999999999888776666555555
Q ss_pred HHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHH---HHHHhhcCCCCChhHHHHHHHHHH
Q 006034 77 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFV---LQLLAEKGELPTRFGSATLGILLL 153 (663)
Q Consensus 77 ~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv---~~il~~~~~~~~~~g~~~l~~~~~ 153 (663)
.....+ | .-.++ .+...+.++++-.+....+-+ .+.++.+ ++...++++.-.+
T Consensus 104 ~~~~~~--------g----~k~l~--------l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~----~~~~a~ava~V~l 159 (335)
T TIGR00698 104 FLTVFL--------G----SSRLK--------LDKQMSILLGAGSSICGAAAVAAIEPVIKAE----KEKVSVAIAIVVI 159 (335)
T ss_pred HHHHHH--------H----HHHhC--------CChhHHHHHHcchhHHHHHHHHHhccccCCC----ccceeeeehHHHH
Confidence 433222 1 12455 567778888765555433333 3444432 2222334444444
Q ss_pred HHHHHHHHHH
Q 006034 154 QDIAVVPLLV 163 (663)
Q Consensus 154 ~Di~~i~~l~ 163 (663)
-+..+++++-
T Consensus 160 fgt~am~l~P 169 (335)
T TIGR00698 160 FGTTGIFLYP 169 (335)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0081 Score=60.47 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=69.3
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
|+|+|. |++|+.+++.|. +.+++|.++-+|+. ..+.+++.|..++.+|..|++.|.++ ++.+|.|+
T Consensus 1 I~V~GatG~~G~~v~~~L~----------~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL----------SAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEE
T ss_pred CEEECCccHHHHHHHHHHH----------hCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEE
Confidence 578886 999999999998 68999999999874 47778889999999999999999764 67889999
Q ss_pred EEcC---CHH--HHHHHHHHHHHhCCC
Q 006034 483 IMYT---DKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~---dd~--~n~~~~~~~r~~~~~ 504 (663)
++++ +.+ .-..++..|++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 70 SVTPPSHPSELEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp EESSCSCCCHHHHHHHHHHHHHHHT-S
T ss_pred eecCcchhhhhhhhhhHHHhhhccccc
Confidence 9998 432 333467778887744
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.016 Score=60.90 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=74.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.+.... .+.+-+.+ ..+++|.++++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~----------~~g~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~-~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLA----------KRGHDCVGYDHDQDAVKAMKEDRTTGV----ANLRELSQ-RLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCccc----CCHHHHHh-hcCCCCEEEEE
Confidence 5889999999999999998 789999999999999999988654332 33333322 34689999999
Q ss_pred cCCHHHHHHHHHH-HHHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAVQR-LRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~~~-~r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p 531 (663)
++++ ..-.++.. +..+.++ +++.-..+. +..+.+++.|+..+=.|
T Consensus 67 vp~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 67 VPHG-IVDAVLEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred cCch-HHHHHHHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEecC
Confidence 9987 33333333 3334444 566554332 23335567787655444
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0094 Score=63.65 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh---------------------HHH----HHHHh-
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP---------------------SVV----KESRK- 454 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~---------------------~~~----~~~~~- 454 (663)
.+.+|+|+|.|.+|..+++.|. ..|. ++++||.|. .++ +.+++
T Consensus 23 ~~~~VlIiG~GglGs~va~~La----------~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i 92 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALV----------RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI 92 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH
Confidence 3468999999999999999998 6787 799999985 122 22222
Q ss_pred -cC--CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 455 -LG--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 455 -~~--~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.+ ...+..|.+. +.+++. ++++|.||.++++.+.+..+...+++.+.. .|.+
T Consensus 93 np~v~i~~~~~~~~~-~~~~~~-~~~~DlVid~~D~~~~r~~in~~~~~~~ip-~i~~ 147 (338)
T PRK12475 93 NSEVEIVPVVTDVTV-EELEEL-VKEVDLIIDATDNFDTRLLINDLSQKYNIP-WIYG 147 (338)
T ss_pred CCCcEEEEEeccCCH-HHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHHHcCCC-EEEE
Confidence 12 3345666654 344443 788999999999999999998999987633 3444
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.086 Score=61.16 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchhh-HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHH
Q 006034 223 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRT-QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301 (663)
Q Consensus 223 l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~-~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~ 301 (663)
+........++..+|+++++|=.++|++++....+- .-.+.++.+.++-+.++.+.+|+++|++.++.....++.+...
T Consensus 14 l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~ 93 (621)
T PRK03562 14 LGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGAL 93 (621)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 344445667899999999999999999998642110 1123466777888888899999999999997665444333333
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 006034 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGG 335 (663)
Q Consensus 302 ~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G 335 (663)
-++.-.+..+..++..|+++..++.+|..++.-.
T Consensus 94 qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 94 QMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3333344445556678899999999988765443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.006 Score=66.71 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+...+...|+.+. + ++++ ++.+|.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr----------~~Ga~ViV~d~dp~ra~~A~~~G~~v~-----~---l~ea-l~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLR----------GLGARVIVTEVDPICALQAAMDGFRVM-----T---MEEA-AELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCchhhHHHHhcCCEec-----C---HHHH-HhCCCEE
Confidence 3467999999999999999998 789999999999998877766676543 1 1222 3579988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCc--EEEEecChhhHHHHHHc
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIP--IYARAQDMMHLLDLKKA 523 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~--iia~~~~~~~~~~l~~~ 523 (663)
+.++++. ++.-....+.+.+... .+.+.+++-+.+.|++.
T Consensus 272 I~aTG~~--~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~ 313 (425)
T PRK05476 272 VTATGNK--DVITAEHMEAMKDGAILANIGHFDNEIDVAALEEL 313 (425)
T ss_pred EECCCCH--HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhc
Confidence 8888763 3333344555555422 22344454455555554
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0051 Score=67.68 Aligned_cols=102 Identities=15% Similarity=0.285 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+|+.++ ..|.+|++.|.|+.+...+...|+.+.. +.++ ++++|.+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~----------a~Ga~ViV~e~dp~~a~~A~~~G~~~~~--------leel-l~~ADIV 313 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALR----------GFGARVVVTEIDPICALQAAMEGYQVVT--------LEDV-VETADIF 313 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhHHHHHhcCceecc--------HHHH-HhcCCEE
Confidence 3468999999999999999997 7899999999999887655555655431 2222 4689988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEE--EEecChhhHHHHHHcC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIY--ARAQDMMHLLDLKKAG 524 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~ii--a~~~~~~~~~~l~~~G 524 (663)
+.++++ .++.-....+.+.|+..++ +|-+++...+.++..+
T Consensus 314 I~atGt--~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 314 VTATGN--KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP 356 (476)
T ss_pred EECCCc--ccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC
Confidence 888764 3444445666777764432 2333334445555544
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=60.08 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=72.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|+++++.|+++++++.+.+.+.... .+.+++.+++ +++|.|+++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~s~~~~~~~~--~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLR----------EDGHEVVGYDVNQEAVDVAGKLGITAR---HSLEELVSKL--EAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHCCCeec---CCHHHHHHhC--CCCCEEEEE
Confidence 4789999999999999998 789999999999999998877664321 2223444433 357999999
Q ss_pred cCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHcCCCeEE
Q 006034 485 YTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAI 529 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r~-~~~~~~iia~~~~------~~~~~~l~~~Gad~vi 529 (663)
+++++....++..+.. +.++ +++.-..+ .+..+.+++.|++.+=
T Consensus 67 vp~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 VPAGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred ecCchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 9987544443333333 3344 56654422 2334455677876543
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0067 Score=65.93 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+...+...|+.+.. ++++ ++++|.+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak----------~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--------leea-l~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRAR----------GMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHh----------hCcCEEEEEeCChhhHHHHHhcCCEeCC--------HHHH-HhcCCEE
Confidence 3568999999999999999997 7899999999999987777777765431 1222 4678988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~ 504 (663)
|.++++. ++.-....+.+.+.
T Consensus 255 ItaTG~~--~vI~~~~~~~mK~G 275 (406)
T TIGR00936 255 ITATGNK--DVIRGEHFENMKDG 275 (406)
T ss_pred EECCCCH--HHHHHHHHhcCCCC
Confidence 8887753 33323344444444
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.026 Score=59.39 Aligned_cols=111 Identities=22% Similarity=0.260 Sum_probs=73.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|+.+++.|. +.|+++.+.|+++++++.+.+.+..+. .+..++.++ .+++|.++++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~~~~e~~~~--~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLL----------RGGHEVVGYDRNPEAVEALAEEGATGA---DSLEELVAK--LPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHCCCeec---CCHHHHHhh--cCCCCEEEEE
Confidence 5889999999999999997 789999999999999999887765432 122334433 3457888888
Q ss_pred cCCHHHHHHHHHHHH-HhCCCCcEEEEec--Ch----hhHHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAVQRLR-LAFPAIPIYARAQ--DM----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r-~~~~~~~iia~~~--~~----~~~~~l~~~Gad~vi~p 531 (663)
.++++....+...+. .+.++ .++.-.. ++ +..+.+++.|+..+=.|
T Consensus 67 v~~~~~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 67 VPAGEITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred ecCCcHHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 888643333333333 33444 4554432 22 23456677898876444
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.028 Score=59.00 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=75.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|+.|+.+++.|. ..|.+|.++|+++++.+.+.+.+...+. .+.+.+ -+.++|.+|
T Consensus 152 g~kvlViG~G~iG~~~a~~L~----------~~Ga~V~v~~r~~~~~~~~~~~G~~~~~-----~~~l~~-~l~~aDiVI 215 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLK----------ALGANVTVGARKSAHLARITEMGLSPFH-----LSELAE-EVGKIDIIF 215 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCeeec-----HHHHHH-HhCCCCEEE
Confidence 468999999999999999997 7889999999999887777776655432 222322 356899888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH--HHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL--LDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~~Gad~vi~p 531 (663)
.+++.... .....+.+.|+.-++=.+.++... +..++.|+..+-.+
T Consensus 216 ~t~p~~~i---~~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 216 NTIPALVL---TKEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLAP 263 (296)
T ss_pred ECCChhhh---hHHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEEC
Confidence 87764321 223344556665555555554322 45677888877433
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.014 Score=59.51 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCC-HHHHHhcCCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASR-PAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~-~~~L~~a~i~~ 477 (663)
..++++|+|. |.+|+.+++.|. +.|++|+++.+++++.+.... .+..++.||.+| .+.+.++-..+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLL----------AKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHH----------hCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 3467999995 999999999997 679999999998887654432 357889999998 35554431147
Q ss_pred CcEEEEEcC
Q 006034 478 PKAVMIMYT 486 (663)
Q Consensus 478 a~~vv~~~~ 486 (663)
+|.++..++
T Consensus 86 ~d~vi~~~g 94 (251)
T PLN00141 86 SDAVICATG 94 (251)
T ss_pred CCEEEECCC
Confidence 898887764
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.007 Score=66.49 Aligned_cols=101 Identities=17% Similarity=0.305 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+...+...|+.+. + -++. ++++|.+
T Consensus 253 aGKtVvViGyG~IGr~vA~~ak----------a~Ga~VIV~e~dp~r~~eA~~~G~~vv--~--leEa-----l~~ADVV 313 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMK----------AAGARVIVTEIDPICALQALMEGYQVL--T--LEDV-----VSEADIF 313 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhHHHHhcCCeec--c--HHHH-----HhhCCEE
Confidence 3568999999999999999997 789999999999988777777777654 1 1223 3568988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEE--EEecChhhHHHHHHc
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIY--ARAQDMMHLLDLKKA 523 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~ii--a~~~~~~~~~~l~~~ 523 (663)
+.++++. ++......+.+.++..++ ++.+++-+...|.++
T Consensus 314 I~tTGt~--~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 314 VTTTGNK--DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred EECCCCc--cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 7766653 333345566666653322 233334455555443
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0034 Score=58.74 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=73.1
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC----HHHHH--hcCCCCCc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLL--SAGITSPK 479 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~----~~~L~--~a~i~~a~ 479 (663)
|.|+|.|.+|..+|-.|. +.|++|.++.+.+ +.+..++.+..+...+..+ +.... ....+.+|
T Consensus 1 I~I~G~GaiG~~~a~~L~----------~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA----------QAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHH----------HTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHH----------HCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 689999999999999997 7899999999999 8888887776665544100 00000 34567899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHc
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA 523 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~ 523 (663)
.+++++...+..-.+-...+...++..++...|-..+.+.+.+.
T Consensus 70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp EEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred EEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 99999877543333333334445555677777777777777655
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0074 Score=62.91 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=65.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-+.++|||||..|+-+|+.++ ..|.+|+|-|.||=++-++.-+|+.|.. +++| .+.+|.+|
T Consensus 209 GK~vVV~GYG~vGrG~A~~~r----------g~GA~ViVtEvDPI~AleA~MdGf~V~~--------m~~A-a~~gDifi 269 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLR----------GMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKTGDIFV 269 (420)
T ss_pred CceEEEecccccchHHHHHhh----------cCCCeEEEEecCchHHHHHhhcCcEEEE--------hHHh-hhcCCEEE
Confidence 457999999999999999998 8999999999999998888888999986 2222 35678888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
.+|++. ++.-....+++... -|++.+
T Consensus 270 T~TGnk--dVi~~eh~~~MkDg-aIl~N~ 295 (420)
T COG0499 270 TATGNK--DVIRKEHFEKMKDG-AILANA 295 (420)
T ss_pred EccCCc--CccCHHHHHhccCC-eEEecc
Confidence 888773 44444455555322 455543
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.022 Score=59.86 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=69.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC------HHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR------PAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~------~~~L~~a~i~~a 478 (663)
+|.|+|.|.+|..++..|. +.|++|.++++ +++.+.+.+.+..+-..+... .+...+ ..+.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~----------~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 69 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLL----------EAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEE-LTGPF 69 (305)
T ss_pred eEEEECCCHHHHHHHHHHH----------HCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHH-ccCCC
Confidence 5899999999999999998 67999999999 888888887665543332110 001112 23789
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~ 522 (663)
|.+++++.....+-.+....+...++..++...|--.+.+.+++
T Consensus 70 d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 70 DLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred CEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 99999988754433333333445556456666665554555554
|
|
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.61 Score=49.01 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=70.1
Q ss_pred ccCchhHHHHHHHHHHhcc--CCCcCCc-hhH----HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 5 ILCRSQILGFFFAGIVLNQ--LGIIRNL-TDV----KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 5 rl~lP~ivg~ilaGillGp--~glv~~~-~~l----~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
...+++.+--++.|+++++ ++..+.. +.+ +.+-++|+++ .|.+++++++.+.+.+........+..++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3567888888999999997 3432221 222 4667777765 589999999999998877777776666665
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhH---HHHHHHHhh
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSS---AFVLQLLAE 135 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~---~vv~~il~~ 135 (663)
....+ | .-+++ .+...+.+++.-.+.... ..+.+.++.
T Consensus 99 ~~~~l--------g----~r~~~--------l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 99 LTYWL--------G----RRLFG--------LDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HHHHH--------H----HHHhC--------CCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 44332 1 24555 577788888866665433 333445544
|
; GO: 0016021 integral to membrane |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0067 Score=56.89 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=70.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|.+|+.+++.|. +. +.++.+.|+++++.+.+.+. +...+.-+.+|.+- + ++++|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~----------~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Dv 84 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALA----------ELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEE---L-LAEADL 84 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhh---c-cccCCE
Confidence 467999999999999999997 55 47899999999988776543 22111123333322 2 689999
Q ss_pred EEEEcCCHHH---HHHHHHHHHHhCCCCcEEEEec-Ch---hhHHHHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKR---TIEAVQRLRLAFPAIPIYARAQ-DM---MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~---n~~~~~~~r~~~~~~~iia~~~-~~---~~~~~l~~~Gad~vi~p~ 532 (663)
++.+++++.. +.... .....++ +++.-.+ .+ +-.+.+++.|+ .+++-.
T Consensus 85 vi~~~~~~~~~~~~~~~~--~~~~~~~-~~v~D~~~~~~~~~l~~~~~~~g~-~~v~g~ 139 (155)
T cd01065 85 IINTTPVGMKPGDELPLP--PSLLKPG-GVVYDVVYNPLETPLLKEARALGA-KTIDGL 139 (155)
T ss_pred EEeCcCCCCCCCCCCCCC--HHHcCCC-CEEEEcCcCCCCCHHHHHHHHCCC-ceeCCH
Confidence 9999988653 22111 1223344 3333222 22 45567788888 355554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK05274 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.22 Score=52.74 Aligned_cols=128 Identities=15% Similarity=0.203 Sum_probs=70.0
Q ss_pred HHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 006034 243 GAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRVGLTL 321 (663)
Q Consensus 243 gAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~~~~g~~~ 321 (663)
.+++.|+.+.|. .+++++...+--.+++|++-+..|..+|++++... ++.++ +....++......++..++++...
T Consensus 178 lplliG~~lgnl--~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~Gil-L~~~~~~~t~~~~~~~~Rl~~~~~ 254 (326)
T PRK05274 178 LPLLVGFILGNL--DPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGIL-LGVAVVAVTGIPLYLADRLIGGGN 254 (326)
T ss_pred HHHHHHHHHHhH--HHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchh-hhhhHhhccchhhHhHhheeecCC
Confidence 688899999983 34455555555567999999999999999998654 44333 223334444554556667764322
Q ss_pred H-HHHHHHHhhhhhhhHHHHHHHHHHHcC---CCchhhHHHHHHHHHHHHhhhHHHHHH
Q 006034 322 Q-ESVRIGLLLSQGGEFAFVVFSLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEI 376 (663)
Q Consensus 322 r-~~~~~g~~l~~~G~~~lvla~~a~~~g---~i~~~~~~~lv~~vvlt~ii~pi~~~~ 376 (663)
. ..+..+. .-|.-.-.-+.++.-.. ...+.....+..++++|+++.|++..+
T Consensus 255 g~~g~a~~t---taG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~ 310 (326)
T PRK05274 255 GVAGAAAGS---TAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAW 310 (326)
T ss_pred CcchHHHHH---HHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111111 11111111111222222 223333334444566788999988763
|
|
| >PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.047 Score=53.25 Aligned_cols=128 Identities=21% Similarity=0.297 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCCCcCCchhHHHHHHHHHHHHHHHHhhcCChH-----HHHHhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 006034 12 LGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLA-----RLKALAKFAFGMGLTQVVLSTLAFTAFELPP 86 (663)
Q Consensus 12 vg~ilaGillGp~glv~~~~~l~~l~~lgl~lllF~~Glel~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (663)
++.+++|+++|.+...+ .+..+...++.+.+++|.+|+++.-+ .+|+.+++.+.+.+..++.+.+.+..+
T Consensus 2 l~~li~Gi~lG~~~~~~-~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~---- 76 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLA---- 76 (191)
T ss_pred eeeHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 45678999999865443 33337899999999999999998543 566677888888877777666554433
Q ss_pred CCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006034 87 NGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 165 (663)
Q Consensus 87 ~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~ 165 (663)
..+++ +++.+++.++.-..==|. .-.++.|. .+.+.|.+++=.-++-+++++++.-++
T Consensus 77 ---------~~ll~--------~~~~~~lav~sG~GwYSl--sg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 77 ---------SLLLG--------LSLKESLAVASGFGWYSL--SGVLITQL--YGPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred ---------HHHhc--------CCHHHHHHHHccCcHHHh--HHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556 678888777754332111 11223332 245778877777777777776655443
|
Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown. |
| >COG0385 Predicted Na+-dependent transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.8 Score=45.46 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccC
Q 006034 31 TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRS 110 (663)
Q Consensus 31 ~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~ 110 (663)
..++....+.+.+++|..|+.++.+++++..|+.... +.+...++++.-.+++ | + ..++ +
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~------~--~-~~~~----------~ 93 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLAL------L--L-AKLF----------P 93 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH------H--H-HHHc----------C
Confidence 3455567899999999999999999998876654332 2234444444333311 1 1 1222 3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHH
Q 006034 111 IDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLL 162 (663)
Q Consensus 111 ~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l 162 (663)
....+..|.++..+.|+.+....... +.+.++ -..+..+.++.++++++.
T Consensus 94 l~~~l~~Gl~ll~~~Pggv~S~~~t~-lAkGnV-alsV~~tsvStll~~f~t 143 (319)
T COG0385 94 LPPELAVGLLLLGCCPGGVASNAMTY-LAKGNV-ALSVCSTSVSTLLGPFLT 143 (319)
T ss_pred CCHHHHHhHHheeeCCCchhHHHHHH-HhcCcH-HHHHHHHHHHHHHHHHHH
Confidence 45567777777665555554433221 112222 234455566666666554
|
|
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.11 Score=54.63 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=76.5
Q ss_pred HhCCcHHHHHHHhhhhccC-C-chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 235 KLGFSDTLGAFLAGAILAE-T-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 235 ~~G~s~~lgAflaGl~l~~-~-~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
..++++.+=|.+.|++++| . ...++.+.-++.-...++.+=-+..|.++++.++.+..+..+.+..+.+..-+..+++
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999998 4 3444444444444567888888999999999999764332233344444455555566
Q ss_pred HH-hhcCCChHHHHHHHHhhhhhhhHHHHHHH
Q 006034 313 IG-PRVGLTLQESVRIGLLLSQGGEFAFVVFS 343 (663)
Q Consensus 313 ~~-~~~g~~~r~~~~~g~~l~~~G~~~lvla~ 343 (663)
.+ +++|++++.+..++.+.+-=|.-+++...
T Consensus 103 lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 103 LGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 66 99999999999999886666655544443
|
; GO: 0016021 integral to membrane |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.032 Score=57.97 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=75.4
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcC-----CCC-C
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG-----ITS-P 478 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~-----i~~-a 478 (663)
++|.|. |.+|+.+++.|. +.|++|.++.+|+++.+ ..+..++.+|.+|++.|+++= ++. +
T Consensus 2 ilVtGatG~iG~~vv~~L~----------~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQ----------AASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred EEEEcCCChHHHHHHHHHH----------hCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 678887 999999999997 78999999999988643 346778899999999998752 344 8
Q ss_pred cEEEEEcCCH----HHHHHHHHHHHHhCCCCcEEEEec---------ChhhHHHHHHc-CCCeE-EcCc
Q 006034 479 KAVMIMYTDK----KRTIEAVQRLRLAFPAIPIYARAQ---------DMMHLLDLKKA-GATDA-ILEN 532 (663)
Q Consensus 479 ~~vv~~~~dd----~~n~~~~~~~r~~~~~~~iia~~~---------~~~~~~~l~~~-Gad~v-i~p~ 532 (663)
|.++.+.++. +.-..+...|++.+.+ +++-... .....+.+++. |++.+ +.|.
T Consensus 69 d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~ 136 (285)
T TIGR03649 69 SAVYLVAPPIPDLAPPMIKFIDFARSKGVR-RFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT 136 (285)
T ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcCCC-EEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence 8887665531 1222345567777644 4433221 01123455565 77764 4554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=63.71 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+.+.+.+.|..++. .++. ++.+|.+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak----------~~Ga~ViV~d~d~~R~~~A~~~G~~~~~----~~e~-----v~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLR----------GQGARVIVTEVDPICALQAAMEGYEVMT----MEEA-----VKEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECChhhHHHHHhcCCEEcc----HHHH-----HcCCCEE
Confidence 3568999999999999999997 7899999999999999988888876542 1222 3578999
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+.++++.
T Consensus 262 I~atG~~ 268 (413)
T cd00401 262 VTTTGNK 268 (413)
T ss_pred EECCCCH
Confidence 8888764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.23 Score=57.47 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCCchh--hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR--TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGL 302 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~--~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~ 302 (663)
.......++..+|+++++|=.++|++++....+ ++ .+.+..+.++-+.++.+.+|+++|++.+++....++.+....
T Consensus 16 ~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~ 94 (601)
T PRK03659 16 AAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQ 94 (601)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 333455688899999999999999999864211 11 234556677888888888999999999876533333222222
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHhhhh
Q 006034 303 IIIKTLIISAIGPRVGLTLQESVRIGLLLSQ 333 (663)
Q Consensus 303 ~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~ 333 (663)
++.-.+..+......|+++..++.+|..++.
T Consensus 95 v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 95 VLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222322333444568899988888865443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.17 Score=58.16 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchhh-HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHH
Q 006034 223 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRT-QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301 (663)
Q Consensus 223 l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~-~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~ 301 (663)
+.....+..++..++++.++|=.++|++++....+. .-.+.++.+.++-..++.+..|+++|++.+.+.....+...+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 444555667888999999999999999998652211 0113455567777777888889999999886543322222222
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCch
Q 006034 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL 353 (663)
Q Consensus 302 ~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~ 353 (663)
-++.-.+..+......++++.+++.+|..++.-+. .++.....+.|..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 22223333444556678999999999886666332 333444455565544
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.017 Score=60.08 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=53.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|.|+|.|.+|..+++.|. +.|++|.++|++++..+.+.+.+.... ..++.+ .++++|.++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~----------~~g~~V~~~d~~~~~~~~a~~~g~~~~--~~~~~~-----~~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLR----------SLGHTVYGVSRRESTCERAIERGLVDE--ASTDLS-----LLKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCCccc--ccCCHh-----HhcCCCEEEEc
Confidence 5889999999999999997 678999999999999888877653210 112222 25789999999
Q ss_pred cCCHHH
Q 006034 485 YTDKKR 490 (663)
Q Consensus 485 ~~dd~~ 490 (663)
++.+..
T Consensus 65 vp~~~~ 70 (279)
T PRK07417 65 LPIGLL 70 (279)
T ss_pred CCHHHH
Confidence 997643
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.042 Score=56.63 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=65.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC----CEEEE-eCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW----PFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~----~vvvi-d~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+|-++|+|++|..+++.|. +.|+ ++++. ++++++.+.+.+.|..+. .+..+. ++++|
T Consensus 2 kI~~IG~G~mG~a~a~~L~----------~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~---~~~~e~-----~~~aD 63 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLV----------ASGVVPPSRISTADDSNPARRDVFQSLGVKTA---ASNTEV-----VKSSD 63 (266)
T ss_pred eEEEECCcHHHHHHHHHHH----------HCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe---CChHHH-----HhcCC
Confidence 4789999999999999997 5565 78888 999999888887765432 122222 45789
Q ss_pred EEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHcCCCeEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKAGATDAI 529 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~~Gad~vi 529 (663)
.++.+++++ ....+...++. ..++..++.-....+....-+..|...++
T Consensus 64 vVil~v~~~-~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vv 113 (266)
T PLN02688 64 VIILAVKPQ-VVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVV 113 (266)
T ss_pred EEEEEECcH-HHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEE
Confidence 999999643 33333333333 34442244443444433344445554443
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=55.59 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+.|.|+|||..|+.-+..|+ +.|.+|++-.+... ..++++++|+.+. ...+| +++||.|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLr----------DSG~~V~Vglr~~s~s~~~A~~~Gf~v~--------~~~eA-v~~aDvV 64 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLR----------DSGVNVIVGLREGSASWEKAKADGFEVM--------SVAEA-VKKADVV 64 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHH----------HCC-EEEEEE-TTCHHHHHHHHTT-ECC--------EHHHH-HHC-SEE
T ss_pred CCEEEEECCChHHHHHHHHHH----------hCCCCEEEEecCCCcCHHHHHHCCCeec--------cHHHH-HhhCCEE
Confidence 467999999999999999998 89999999988776 6788888888774 23333 6789999
Q ss_pred EEEcCCHH-HHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHcCCCeEE
Q 006034 482 MIMYTDKK-RTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAI 529 (663)
Q Consensus 482 v~~~~dd~-~n~~~~~~~r~~~~~~~iia~~~--~~~~~~~l~~~Gad~vi 529 (663)
+.+++|.. .-+.--.....+.|. .++.-+. |-.+...--+.++|.++
T Consensus 65 ~~L~PD~~q~~vy~~~I~p~l~~G-~~L~fahGfni~~~~i~pp~~vdV~m 114 (165)
T PF07991_consen 65 MLLLPDEVQPEVYEEEIAPNLKPG-ATLVFAHGFNIHYGLIKPPKDVDVIM 114 (165)
T ss_dssp EE-S-HHHHHHHHHHHHHHHS-TT--EEEESSSHHHHCTTS---TTSEEEE
T ss_pred EEeCChHHHHHHHHHHHHhhCCCC-CEEEeCCcchhhcCcccCCCCCeEEE
Confidence 99998753 233334455556555 5555544 33344444556777654
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.037 Score=62.58 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=58.9
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---------------cCCCEEEecCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------------LGFPILYGDAS 465 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---------------~~~~vi~GD~~ 465 (663)
..+.++|.|. |.+|+.+++.|. +.|++|+++++|+++.+.+.+ .+..++.||.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LL----------k~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELL----------KLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 4457888886 999999999997 789999999999988765432 13568999999
Q ss_pred CHHHHHhcCCCCCcEEEEEcC
Q 006034 466 RPAVLLSAGITSPKAVMIMYT 486 (663)
Q Consensus 466 ~~~~L~~a~i~~a~~vv~~~~ 486 (663)
|.+.+++ -++++|.||.+.+
T Consensus 149 D~esI~~-aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGP-ALGNASVVICCIG 168 (576)
T ss_pred CHHHHHH-HhcCCCEEEEccc
Confidence 9998865 3567898887764
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.037 Score=56.39 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+.+++|+|.|..++.+++... ..|++|+++|.+++......-.+...+..+. -++.+. .++.-++
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~----------~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~t~ 164 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALA----------PLPCRVTWVDSREAEFPEDLPDGVATLVTDE-PEAEVA--EAPPGSY 164 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHh----------cCCCEEEEEeCCcccccccCCCCceEEecCC-HHHHHh--cCCCCcE
Confidence 35678999999999999999997 8999999999888744222212222222221 133444 3556788
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH---HHHHcCC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGA 525 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Ga 525 (663)
++++|.|.+....+...+-+..|-.+|=+.-...+... .|++.|.
T Consensus 165 vvi~th~h~~D~~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 165 FLVLTHDHALDLELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGV 212 (246)
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 99999986655555555542223324444444333333 4445554
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0093 Score=54.13 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEe-CChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD-LNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid-~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+-++-|+|.|++|..+++.|. +.|++|..+. ++++..+++...--.. ...+ +.+ -+++||.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~----------~ag~~v~~v~srs~~sa~~a~~~~~~~---~~~~---~~~-~~~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALA----------RAGHEVVGVYSRSPASAERAAAFIGAG---AILD---LEE-ILRDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHH----------HTTSEEEEESSCHH-HHHHHHC--TT-----------TTG-GGCC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCcccccccccccccc---cccc---ccc-ccccCCE
Confidence 4558999999999999999998 7899998885 4555666665421111 1111 111 2468999
Q ss_pred EEEEcCCHHHHHHHHHHHHH--hCCCCcEEEEecChh---hHHHHHHcCC
Q 006034 481 VMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDMM---HLLDLKKAGA 525 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~--~~~~~~iia~~~~~~---~~~~l~~~Ga 525 (663)
++++++||...-.....+.. ..|+ ++++.+.=.. -.+-+++.|+
T Consensus 72 v~iavpDdaI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 72 VFIAVPDDAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp EEE-S-CCHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHHHHTT-
T ss_pred EEEEechHHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhHHHCCC
Confidence 99999998654443333333 2344 7888766332 3333444554
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.36 Score=51.42 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHHHHhC-----CcHHHHHHHhhhhccCC----chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhH-HHHHH
Q 006034 228 GTSLLTQKLG-----FSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREW-PNVLA 297 (663)
Q Consensus 228 ~~~~l~~~~G-----~s~~lgAflaGl~l~~~----~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~-~~~l~ 297 (663)
...++.++++ ++...+++..|.+++|. ...+-..+.++.+.+.-..+|-...=|++.+.++.+.+ +..+.
T Consensus 233 vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~vi 312 (404)
T COG0786 233 VGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVI 312 (404)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4445777666 67789999999999985 12222345555667888888888888888888887543 33333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 006034 298 LLAGLIIIKTLIISAIGPRVGLTLQESVRIGL 329 (663)
Q Consensus 298 ~~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~ 329 (663)
+.+-.++.-....+...|..|.++..+...+.
T Consensus 313 L~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G 344 (404)
T COG0786 313 LAVQTIVMALFAIFVTFRLMGKNYDAAVLAAG 344 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHHHhcc
Confidence 33333344444556666778888888776554
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.032 Score=59.59 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh---------------------HHHH----HHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP---------------------SVVK----ESRKL 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~---------------------~~~~----~~~~~ 455 (663)
.+.+|+|+|.|.+|..+++.|. ..|. ++.+||.|. .+++ .+++.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La----------~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i 92 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLV----------RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI 92 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH
Confidence 3568999999999999999997 6777 899999984 1222 22221
Q ss_pred C----CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 456 G----FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 456 ~----~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+ ...+..+.++.+.. +. ++++|.||.++++.+.+..+...+++.+.. .+.+.
T Consensus 93 np~v~v~~~~~~~~~~~~~-~~-~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP-~i~~~ 148 (339)
T PRK07688 93 NSDVRVEAIVQDVTAEELE-EL-VTGVDLIIDATDNFETRFIVNDAAQKYGIP-WIYGA 148 (339)
T ss_pred CCCcEEEEEeccCCHHHHH-HH-HcCCCEEEEcCCCHHHHHHHHHHHHHhCCC-EEEEe
Confidence 1 33455666554433 33 678999999999999999999999988633 34433
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.018 Score=60.29 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=52.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC-----CCEEEecCCCH-----------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG-----FPILYGDASRP----------- 467 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~-----~~vi~GD~~~~----------- 467 (663)
++|.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+.- ..+-.|+.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la----------~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA----------VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECccHHHHHHHHHHH----------hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 46999999999999999997 78999999999999988765310 00111222211
Q ss_pred -HHHHhcCCCCCcEEEEEcCCHH
Q 006034 468 -AVLLSAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 468 -~~L~~a~i~~a~~vv~~~~dd~ 489 (663)
+.+ +..+++||.|+.+..++.
T Consensus 72 ~~~~-~~~~~~aD~Vi~avpe~~ 93 (288)
T PRK09260 72 SLDL-KAAVADADLVIEAVPEKL 93 (288)
T ss_pred eCcH-HHhhcCCCEEEEeccCCH
Confidence 112 234688999998888764
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.014 Score=61.54 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=82.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhc--------CCCE-EEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKL--------GFPI-LYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~--------~~~v-i~GD~~~~~~L~~a 473 (663)
+|.|+|.|.+|+.++..|. ..| .+++++|.|+++++....+ +... +. ..+.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~----------~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~~----- 64 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLV----------NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDYS----- 64 (306)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCHH-----
Confidence 6899999999999999997 556 5899999999987655431 1221 22 22332
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHH-cCC--CeEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l~~-~Ga--d~vi~p-~ 532 (663)
.+.+||.+|.+++. | +.|.. ++..+++.+|+.. +..+.||.+.- .+.+ .|. .+|+-. .
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~-vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt 143 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGI-FLVASNPVDVITYVVQKLSGLPKNRVIGTGT 143 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEecChHHHHHHHHHHHhCcCHHHEeeccc
Confidence 24799999998875 1 23544 4455677788854 44555655432 2222 333 345444 3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
.+-..++-..+-+.+++++..++
T Consensus 144 ~LDs~R~~~~la~~l~v~~~~v~ 166 (306)
T cd05291 144 SLDTARLRRALAEKLNVDPRSVH 166 (306)
T ss_pred hHHHHHHHHHHHHHHCCCcccce
Confidence 33355666666666777775444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0078 Score=65.37 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE------EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV------AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv------vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i 475 (663)
..++|+|+|||++|+.-|..|+ ..|.+|+ +||.+.+..+.+.++|+.+ + + +.++ +
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLr----------dSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~--~----~~Ea-~ 95 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMR----------DSGLDISYALRKEAIAEKRASWRKATENGFKV--G--T----YEEL-I 95 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCc----------cccceeEEeccccccccccchHHHHHhcCCcc--C--C----HHHH-H
Confidence 4478999999999998888886 7899999 8898888888888888854 2 2 3333 7
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHh
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~~ 501 (663)
.+||.|+++++|......-......+
T Consensus 96 ~~ADvVviLlPDt~q~~v~~~i~p~L 121 (487)
T PRK05225 96 PQADLVINLTPDKQHSDVVRAVQPLM 121 (487)
T ss_pred HhCCEEEEcCChHHHHHHHHHHHhhC
Confidence 89999999999975444433333333
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.047 Score=54.03 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=75.1
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~ 485 (663)
+=.+|.|++|..++++|. +.|++|++.|.|++.++.+.+++ ..|-.+=.+.+.+.+-.++-.+++..
T Consensus 3 iGmiGLGrMG~n~v~rl~----------~~ghdvV~yD~n~~av~~~~~~g---a~~a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 3 IGMIGLGRMGANLVRRLL----------DGGHDVVGYDVNQTAVEELKDEG---ATGAASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred ceeeccchhhHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHhcC---CccccCHHHHHHhcCCCcEEEEEccC
Confidence 457899999999999998 89999999999999999999877 33333446677777766666665555
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChh------hHHHHHHcCCCeEE
Q 006034 486 TDKKRTIEAVQRLRLAFPAIPIYARAQDMM------HLLDLKKAGATDAI 529 (663)
Q Consensus 486 ~dd~~n~~~~~~~r~~~~~~~iia~~~~~~------~~~~l~~~Gad~vi 529 (663)
+| .++..+-..+-.+.+. .++.---|.. ..+.+++.|++.+=
T Consensus 70 g~-it~~vi~~la~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~flD 117 (300)
T COG1023 70 GD-ITDAVIDDLAPLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117 (300)
T ss_pred CC-chHHHHHHHHhhcCCC-CEEEECCccchHHHHHHHHHHHhcCCeEEe
Confidence 54 3444445555666655 4555444333 33346667776553
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.025 Score=59.98 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--------e--cCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--------G--DASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--------G--D~~~~~~L~~a~ 474 (663)
+|.|+|.|.+|..++..|. +.|++|.++|++++.++.+.+.+....+ + -.++.+ + -
T Consensus 3 kI~iiG~G~mG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 68 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLA----------RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLA---E-A 68 (325)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHH---H-H
Confidence 5899999999999999997 7899999999999999888775422111 0 012222 1 2
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
++++|.+++++.++...-......+...++..++...|
T Consensus 69 ~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~n 106 (325)
T PRK00094 69 LADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATK 106 (325)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 45789999999986432222223333455534454443
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.078 Score=55.94 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=74.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHH-----hcCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLL-----SAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~-----~a~i~~ 477 (663)
-+|.|+|.|.+|..++-.|. +.|.+|+++++.+++.+.++++ |..+ ..+... .... ....+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~----------~~G~~V~lv~r~~~~~~~i~~~~Gl~i-~~~g~~-~~~~~~~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA----------RAGLPVRLILRDRQRLAAYQQAGGLTL-VEQGQA-SLYAIPAETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hCCCCeEEEEechHHHHHHhhcCCeEE-eeCCcc-eeeccCCCCcccccc
Confidence 46999999999999999997 7899999999998888888754 5433 222211 1100 111347
Q ss_pred CcEEEEEcCCHHHHHHHHHHH-HHhCCCCcEEEEecChhhHHHHHH-cCCCeEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRL-RLAFPAIPIYARAQDMMHLLDLKK-AGATDAI 529 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~~~~~~~l~~-~Gad~vi 529 (663)
.|.+++++-..... .+...+ ...+++..++...|=-.+.+.+.+ .+-+.++
T Consensus 71 ~D~viv~vK~~~~~-~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~ 123 (305)
T PRK05708 71 IHRLLLACKAYDAE-PAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCI 123 (305)
T ss_pred cCEEEEECCHHhHH-HHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEE
Confidence 89998888775432 333333 445778778888887666665544 4555444
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.038 Score=61.65 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRK-LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|+|+|+++..=++.|. +.|.+|+||-. +++. +.+.+ .....+..+..+. .++++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll----------~~ga~v~visp~~~~~~-~~l~~~~~i~~~~~~~~~~------dl~~~ 73 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLL----------DAGARLTVNALAFIPQF-TAWADAGMLTLVEGPFDES------LLDTC 73 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHH-HHHHhCCCEEEEeCCCChH------HhCCC
Confidence 3468999999999999888886 78889999944 4443 33433 3456666655433 34688
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+.|+++|+|.+.|-.+...+|+.+
T Consensus 74 ~lv~~at~d~~~n~~i~~~a~~~~ 97 (457)
T PRK10637 74 WLAIAATDDDAVNQRVSEAAEARR 97 (457)
T ss_pred EEEEECCCCHHHhHHHHHHHHHcC
Confidence 999999999999999999999875
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.086 Score=55.14 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=70.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-|+|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+... .++.+ + -++++|.++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---~-~~~~aDivi~~ 62 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLA----------KAGYQLHVTTIGPEVADELLAAGAVT----AETAR---Q-VTEQADVIFTM 62 (291)
T ss_pred CEEEEEecHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCcc----cCCHH---H-HHhcCCEEEEe
Confidence 3789999999999999998 78999999999999999888765432 12221 1 13578999999
Q ss_pred cCCHHHHHHHH---H-HHHHhCCCCcEEEEecC--h----hhHHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAV---Q-RLRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~---~-~~r~~~~~~~iia~~~~--~----~~~~~l~~~Gad~vi~p 531 (663)
.+++..--... . ......|+ .+++-..+ + +-.+.+++.|+..+-.|
T Consensus 63 vp~~~~~~~v~~~~~~~~~~~~~g-~iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 63 VPDSPQVEEVAFGENGIIEGAKPG-KTLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred cCCHHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 98764322221 1 22333444 55554432 2 23344566788766655
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.03 Score=59.27 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...+++|+|.|++|+.+++.|.+ ....++.++++++++.+.+.+ .+..++ +.+-+.++ +.++|.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~---------~g~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~~-l~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAA---------KGVAEITIANRTYERAEELAKELGGNAV-----PLDELLEL-LNEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHH---------cCCCEEEEEeCCHHHHHHHHHHcCCeEE-----eHHHHHHH-HhcCCE
Confidence 34679999999999999999971 244789999999998866655 444332 22233332 577999
Q ss_pred EEEEcCCHHH-HHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 481 VMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 481 vv~~~~dd~~-n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
++.+|+.++. +.......+... +-.++.-...|.+
T Consensus 242 Vi~at~~~~~~~~~~~~~~~~~~-~~~~viDlavPrd 277 (311)
T cd05213 242 VISATGAPHYAKIVERAMKKRSG-KPRLIVDLAVPRD 277 (311)
T ss_pred EEECCCCCchHHHHHHHHhhCCC-CCeEEEEeCCCCC
Confidence 9999998765 333222222211 2256666666544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.096 Score=54.89 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=71.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-|+|.|.+|..+++.|. +.|++|.+.|+++++.+.+.+.+..+ .++.+-+ ++++|.++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~~~g~~~----~~~~~e~----~~~~d~vi~~ 65 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLL----------KAGYSLVVYDRNPEAVAEVIAAGAET----ASTAKAV----AEQCDVIITM 65 (296)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCee----cCCHHHH----HhcCCEEEEe
Confidence 6899999999999999997 78899999999999988887765432 1222222 3578999999
Q ss_pred cCCHHHHHHHH----HHHHHhCCCCcEEEEec--Chhh----HHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAV----QRLRLAFPAIPIYARAQ--DMMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~----~~~r~~~~~~~iia~~~--~~~~----~~~l~~~Gad~vi~p 531 (663)
++++...-... ...+.+.++ ++++-.. ++.. .+.+++.|++.+-.|
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPG-TVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 98765322221 123334444 5565443 2322 234455688765555
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.093 Score=55.11 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=82.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+... ..+++ ++ ++++|.++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~----------~~G~~V~v~d~~~~~~~~~~~~g~~~----~~s~~---~~-~~~aDvVi~~ 64 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLL----------KQGHQLQVFDVNPQAVDALVDKGATP----AASPA---QA-AAGAEFVITM 64 (296)
T ss_pred eEEEEeeCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCcc----cCCHH---HH-HhcCCEEEEe
Confidence 5889999999999999997 78999999999999999888765432 12222 11 3578999999
Q ss_pred cCCHHHHHHHHH----HHHHhCCCCcEEEEec--Chh----hHHHHHHcCCCeEEcCchHHHHHHHHH--HHHhcCCCHH
Q 006034 485 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DMM----HLLDLKKAGATDAILENAETSLQLGSK--LLKGFGVMSD 552 (663)
Q Consensus 485 ~~dd~~n~~~~~----~~r~~~~~~~iia~~~--~~~----~~~~l~~~Gad~vi~p~~~~~~~la~~--~~~~~~~~~~ 552 (663)
.++++.--.+.. ..+.+.++ +++.... ++. -.+.+.+.|++.+=.|-. .+..-++. +.-..|-++.
T Consensus 65 vp~~~~~~~vl~~~~~i~~~l~~g-~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~-g~~~~a~~g~l~~~~gg~~~ 142 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCEGLSRD-ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVG-RTSDNAITGTLLLLAGGTAE 142 (296)
T ss_pred cCCHHHHHHHHcCcccHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCC-CCHHHHHhCcEEEEECCCHH
Confidence 998753222221 12223333 4555444 333 335567778886655532 12222221 1112344566
Q ss_pred HHHHHHHHH
Q 006034 553 DVTFLRQLV 561 (663)
Q Consensus 553 ~~~~~~~~~ 561 (663)
..+....++
T Consensus 143 ~~~~~~p~l 151 (296)
T PRK15461 143 QVERATPIL 151 (296)
T ss_pred HHHHHHHHH
Confidence 665554444
|
|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.46 Score=52.06 Aligned_cols=113 Identities=23% Similarity=0.243 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC--chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHH-HHH
Q 006034 221 LCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPN-VLA 297 (663)
Q Consensus 221 ~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~--~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~-~l~ 297 (663)
..+..+....++.+.+|+++++|=.++|+++.+. ..-.+-.+.++.+.++=..++...+|++.|++.+.+.... ...
T Consensus 13 iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~ 92 (397)
T COG0475 13 ILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLG 92 (397)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhh
Confidence 3444555666899999999999999999999983 1222233445555666666777889999999999876443 222
Q ss_pred HHHHHHHHHHHHH--HHHHhhcCCChHHHHHHHHhhhhh
Q 006034 298 LLAGLIIIKTLII--SAIGPRVGLTLQESVRIGLLLSQG 334 (663)
Q Consensus 298 ~~~~~~l~K~~~~--~~~~~~~g~~~r~~~~~g~~l~~~ 334 (663)
.....+..-++.. +... ..++++++++..|..++.-
T Consensus 93 ~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~s 130 (397)
T COG0475 93 VAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALS 130 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHH
Confidence 2222222221222 2222 5899999999999866553
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.02 Score=63.87 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=65.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHH----HHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVV----KESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~----~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++++|+|.|+.|..+|+.|. +.|++|+++|.++ +.. +.+.+.+..++.+|..+. ..++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLK----------KLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh------Hhhc
Confidence 467999999999999999998 8999999999985 333 444556788889998872 2457
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
+|.||.+++....|- ....+|+.+ ++++.
T Consensus 69 ~d~vv~~~g~~~~~~-~~~~a~~~~--i~~~~ 97 (450)
T PRK14106 69 VDLVVVSPGVPLDSP-PVVQAHKKG--IEVIG 97 (450)
T ss_pred CCEEEECCCCCCCCH-HHHHHHHCC--CcEEe
Confidence 898988887655544 555666654 34443
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.03 Score=54.85 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=61.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
.++++|+|. |.+|+.+++.|. +.+.+|+++++++++.+.+.+ .+..+...|..|.+-+.+ -+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~----------~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLA----------REGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAA-AIK 96 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHH-HHh
Confidence 357999997 999999999997 678899999999998777654 246677788888776654 346
Q ss_pred CCcEEEEEcCCHHH
Q 006034 477 SPKAVMIMYTDKKR 490 (663)
Q Consensus 477 ~a~~vv~~~~dd~~ 490 (663)
++|.++.+++....
T Consensus 97 ~~diVi~at~~g~~ 110 (194)
T cd01078 97 GADVVFAAGAAGVE 110 (194)
T ss_pred cCCEEEECCCCCce
Confidence 88988888887654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.072 Score=55.82 Aligned_cols=137 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|+++.+.|++++ .+.+.+.|.... .++.-+ .+++|.++++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~----------~~G~~v~v~~~~~~-~~~~~~~g~~~~----~s~~~~----~~~advVi~~ 62 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLA----------RAGHQLHVTTIGPV-ADELLSLGAVSV----ETARQV----TEASDIIFIM 62 (292)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEeCCHh-HHHHHHcCCeec----CCHHHH----HhcCCEEEEe
Confidence 4789999999999999997 78999999999985 466655554322 222221 3588999999
Q ss_pred cCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hh----hHHHHHHcCCCeEEcCchHHHHHHHHH-HHH-hcCCCHH
Q 006034 485 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MM----HLLDLKKAGATDAILENAETSLQLGSK-LLK-GFGVMSD 552 (663)
Q Consensus 485 ~~dd~~n~~~~~----~~r~~~~~~~iia~~~~--~~----~~~~l~~~Gad~vi~p~~~~~~~la~~-~~~-~~~~~~~ 552 (663)
..|++.-..+.. .+....|+ +++.-..+ ++ -.+.+++.|++.+-.|- ..+..-++. -+. ..+=++.
T Consensus 63 v~~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPV-sGg~~~a~~g~l~~~~gG~~~ 140 (292)
T PRK15059 63 VPDTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAPV-SGGEIGAREGTLSIMVGGDEA 140 (292)
T ss_pred CCChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHhcCcEEEEEcCCHH
Confidence 998754332221 12233444 56665553 32 33566788998777773 223332221 111 2244555
Q ss_pred HHHHHHHHHh
Q 006034 553 DVTFLRQLVR 562 (663)
Q Consensus 553 ~~~~~~~~~~ 562 (663)
.++.+..+++
T Consensus 141 ~~~~~~p~l~ 150 (292)
T PRK15059 141 VFERVKPLFE 150 (292)
T ss_pred HHHHHHHHHH
Confidence 5565555444
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.047 Score=54.10 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=66.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.++|+|+|..|..=++.|. +.|.+++++-.+. +....+.+ .....+. +.-+++-+. +++.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll----------~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-----~~~l 75 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLL----------KAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-----DAFL 75 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-----CceE
Confidence 457999999999999999997 8899999997766 44555544 3344555 555555553 4999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
++++|+|.+.|-.+...|++.+
T Consensus 76 viaAt~d~~ln~~i~~~a~~~~ 97 (210)
T COG1648 76 VIAATDDEELNERIAKAARERR 97 (210)
T ss_pred EEEeCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.063 Score=56.59 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=85.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecC----CCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDA----SRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~----~~~~~L~~a~i~~a~~ 480 (663)
+|.|+|.|-+|..++-.|. +.|.+|+++-+++. ++.+++.|..+...+. .....-.......+|.
T Consensus 2 kI~IlGaGAvG~l~g~~L~----------~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 2 KILILGAGAIGSLLGARLA----------KAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADL 70 (307)
T ss_pred eEEEECCcHHHHHHHHHHH----------hCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCE
Confidence 5899999999999999997 67777777776666 8888888877776665 1112222334558999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCe
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATD 527 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~ 527 (663)
+++++..-..+-.+....+...|+..|+...|--.+.+.+++.....
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 99999887666666677777788877888999888888888877766
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.058 Score=57.72 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=65.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecC------------CCHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDA------------SRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~------------~~~~~L~ 471 (663)
.+|.|+|.|.+|..++..|. +.|++|.++|+++. .+.+++.+..+...+. ++. .+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~----------~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA----------AAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTD--PA 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccC--hh
Confidence 36999999999999999997 78999999998764 4666665554422111 111 12
Q ss_pred hcCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 006034 472 SAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~ 522 (663)
.++++|.+++++.++.. ..++..++. ..++..++...|.....+.+++
T Consensus 70 --~~~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 70 --ALATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred --hccCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 25689999999887543 333444444 3455335555555554454544
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.025 Score=58.52 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CC----
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI---- 475 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i---- 475 (663)
.+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+.+..++.+|.+|++.++++ .+
T Consensus 4 ~k~vlItGasggiG~~la~~l~----------~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----------SDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 357899998 999999999997 7899999999999998888887888999999998866442 11
Q ss_pred -CCCcEEEEE
Q 006034 476 -TSPKAVMIM 484 (663)
Q Consensus 476 -~~a~~vv~~ 484 (663)
.+.|.+|..
T Consensus 74 ~g~id~li~~ 83 (277)
T PRK05993 74 GGRLDALFNN 83 (277)
T ss_pred CCCccEEEEC
Confidence 356776654
|
|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.36 Score=51.33 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=69.3
Q ss_pred hCCcHHHHHHHhhhhccCCc---hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 236 LGFSDTLGAFLAGAILAETN---FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~~---~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
.++++.+=|.+.|++++|.- ..+....-++-....++-+=-+..|+++++.++.+.....+.+....+..-+...++
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999999952 122222212211345666667899999999999765333344444444555555455
Q ss_pred HH-hhcCCChHHHHHHHHhhhhhhhHHHHH
Q 006034 313 IG-PRVGLTLQESVRIGLLLSQGGEFAFVV 341 (663)
Q Consensus 313 ~~-~~~g~~~r~~~~~g~~l~~~G~~~lvl 341 (663)
.+ +++|++++.+..++.+.+-=|.-+++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 55 789999999999988766655444443
|
Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa. |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.14 Score=53.04 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=76.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|-.+|.|.+|..+|+.|. +.|+++.+.|+++++ ++.+.+.|..+.. ++ ..-+.++|.||.
T Consensus 2 kIafIGLG~MG~pmA~~L~----------~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~----s~----~eaa~~aDvVit 63 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLL----------KAGHEVTVYNRTPEKAAELLAAAGATVAA----SP----AEAAAEADVVIT 63 (286)
T ss_pred eEEEEcCchhhHHHHHHHH----------HCCCEEEEEeCChhhhhHHHHHcCCcccC----CH----HHHHHhCCEEEE
Confidence 5889999999999999998 899999999999999 7777766655432 22 123578999999
Q ss_pred EcCCHHHHHHHHH----HHHHhCCCCcEEEEec--Ch----hhHHHHHHcCCCeEEcC
Q 006034 484 MYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DM----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 484 ~~~dd~~n~~~~~----~~r~~~~~~~iia~~~--~~----~~~~~l~~~Gad~vi~p 531 (663)
+..|+..-..+.. .++.+.|. .++.-.+ ++ +..+.+++.|.+.+=-|
T Consensus 64 mv~~~~~V~~V~~g~~g~~~~~~~G-~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAP 120 (286)
T COG2084 64 MLPDDAAVRAVLFGENGLLEGLKPG-AIVIDMSTISPETARELAAALAAKGLEFLDAP 120 (286)
T ss_pred ecCCHHHHHHHHhCccchhhcCCCC-CEEEECCCCCHHHHHHHHHHHHhcCCcEEecC
Confidence 9998765333322 34444444 4444333 33 45556788898887777
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.029 Score=57.02 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=51.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~ 472 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+.+...+.+|.+|++-+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELK----------RRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHH
Confidence 46999998 999999999997 779999999999998888777778889999999876544
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.1 Score=54.58 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=69.2
Q ss_pred EEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC
Q 006034 408 IVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 408 I~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d 487 (663)
++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.+... ..+++ + -++++|.++++..+
T Consensus 1 ~IGlG~mG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~---~-~~~~advVil~vp~ 62 (288)
T TIGR01692 1 FIGLGNMGGPMAANLL----------KAGHPVRVFDLFPDAVEEAVAAGAQA----AASPA---E-AAEGADRVITMLPA 62 (288)
T ss_pred CCcccHhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHcCCee----cCCHH---H-HHhcCCEEEEeCCC
Confidence 4799999999999997 78999999999999999988866432 11222 1 24578999999998
Q ss_pred HHHHHHHH---HH-HHHhCCCCcEEEEec--Chhh----HHHHHHcCCCeEEcC
Q 006034 488 KKRTIEAV---QR-LRLAFPAIPIYARAQ--DMMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 488 d~~n~~~~---~~-~r~~~~~~~iia~~~--~~~~----~~~l~~~Gad~vi~p 531 (663)
++.--.+. .. .....++ +++.-.. +++. .+.+++.|++.+=.|
T Consensus 63 ~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP 115 (288)
T TIGR01692 63 GQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP 115 (288)
T ss_pred hHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence 65322222 12 2233444 4444433 3332 345566798876655
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.14 Score=53.94 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=59.4
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
....++.|+|+|.+|..+++.|. +.|++|.++|.+++. +...+.+... .++.+-+. ..++|.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~----------~~G~~V~~~d~~~~~-~~a~~~gv~~----~~~~~e~~---~~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFV----------KQGHTVLATSRSDYS-DIAAELGVSF----FRDPDDFC---EEHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEECccHH-HHHHHcCCee----eCCHHHHh---hCCCCE
Confidence 34568999999999999999997 678899999998743 4444455432 23333221 146899
Q ss_pred EEEEcCCHHHHHHHHHHH--HHhCCCCcEEEEecC
Q 006034 481 VMIMYTDKKRTIEAVQRL--RLAFPAIPIYARAQD 513 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~--r~~~~~~~iia~~~~ 513 (663)
|++++..+.. ..+.... ..+.++ .++.-+.+
T Consensus 96 Vilavp~~~~-~~vl~~l~~~~l~~~-~iviDv~S 128 (304)
T PLN02256 96 VLLCTSILST-EAVLRSLPLQRLKRS-TLFVDVLS 128 (304)
T ss_pred EEEecCHHHH-HHHHHhhhhhccCCC-CEEEecCC
Confidence 9999987532 3322222 224455 45555554
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.02 Score=52.73 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|+|.|..|+.++..|. +.|.+ +.++.+++++++.+.+. +..+-.-+..|.. ..+.++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~----------~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 76 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALA----------ALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEA 76 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHH----------HTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTE
T ss_pred CCCEEEEECCHHHHHHHHHHHH----------HcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhC
Confidence 4678999999999999999998 66776 99999999999988763 3334343444333 124578
Q ss_pred cEEEEEcCCHHH
Q 006034 479 KAVMIMYTDKKR 490 (663)
Q Consensus 479 ~~vv~~~~dd~~ 490 (663)
|.+|.+|+....
T Consensus 77 DivI~aT~~~~~ 88 (135)
T PF01488_consen 77 DIVINATPSGMP 88 (135)
T ss_dssp SEEEE-SSTTST
T ss_pred CeEEEecCCCCc
Confidence 999999887543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.39 Score=55.24 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchh---hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHH
Q 006034 224 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR---TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 300 (663)
Q Consensus 224 ~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~---~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~ 300 (663)
.+...+..+++.+|++..++-.++|++++....+ ..-.+..+.+..+..++..+..|+++|++.+.+.+...+.+..
T Consensus 16 ~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~ 95 (562)
T PRK05326 16 LLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLAT 95 (562)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHH
Confidence 3444556788899999999999999999875221 0112334556788899999999999999999877665554443
Q ss_pred HHHHHHHHH-HHHHHhhcCCChHHHHHHHHhhhhhhhH
Q 006034 301 GLIIIKTLI-ISAIGPRVGLTLQESVRIGLLLSQGGEF 337 (663)
Q Consensus 301 ~~~l~K~~~-~~~~~~~~g~~~r~~~~~g~~l~~~G~~ 337 (663)
..++.-.+. .+...+..++++.+++.+|..+++-...
T Consensus 96 ~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 96 LGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 334333333 3445556799999999999877665433
|
|
| >PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.89 Score=44.21 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 006034 39 WGILFLLFEMGLELSLARLKALAKFAFG 66 (663)
Q Consensus 39 lgl~lllF~~Glel~~~~l~~~~~~~~~ 66 (663)
+.+.+++|..|++++++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4678899999999999999988776543
|
They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A. |
| >PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.13 Score=48.46 Aligned_cols=133 Identities=9% Similarity=-0.012 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHh--CCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc-
Q 006034 488 KKRTIEAVQRLRLA--FPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNS- 564 (663)
Q Consensus 488 d~~n~~~~~~~r~~--~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~- 564 (663)
|.++...++.+... .-..++|+.+.|.++.++++..|-+.|=.-+..+|+.+..=..+ |..+.-.++++..+
T Consensus 17 Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ-----~GL~~Iy~~iL~~~k 91 (206)
T PF06241_consen 17 DADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQ-----PGLAQIYEDILGFEK 91 (206)
T ss_pred hHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccC-----ccHHHHHHHHhCCCC
Confidence 44555555554332 23458999999999999999999998755554455544444444 66666666666544
Q ss_pred cccchhhhcccCCcchhcccccccchhhhhhhccCC--CCCCCcccccCCCCCCCCcCCCCCCceEEEeecCCC
Q 006034 565 MEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKT--IPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTNN 636 (663)
Q Consensus 565 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 636 (663)
.++-+...+. .. +.+..++++.=.+ .-.-..++++...|++|..++.||++|+.+.-..+.
T Consensus 92 ~vf~l~~~P~------L~-----Gm~y~dvr~~Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~ 154 (206)
T PF06241_consen 92 NVFNLKRWPQ------LD-----GMKYRDVRRSFPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNGKR 154 (206)
T ss_pred cEEEEecCcc------cC-----CcCHHHHHhcCCcceeeeeeeCCeeEECCCCCceeecCCEEEEEeecCCcc
Confidence 2333333221 11 2233343332111 111113678889999999999999999998876554
|
They have been implicated in modulating the nuclear membrane envelope potential []. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.16 Score=56.70 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=73.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
+|-|+|.|.+|..+|+.|. +.|++|.+.|+++++++.+.+. +..+ .+ ..+.+-+- ..++++|.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~----------~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i-~~-~~s~~e~v-~~l~~~d~ 69 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIA----------SRGFKISVYNRTYEKTEEFVKKAKEGNTRV-KG-YHTLEELV-NSLKKPRK 69 (470)
T ss_pred EEEEEeEhHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhhhhcCCcc-ee-cCCHHHHH-hcCCCCCE
Confidence 5889999999999999998 7999999999999999888753 4322 22 22332221 13457887
Q ss_pred EEEEcCCHHHHHHHHHHH-HHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcC
Q 006034 481 VMIMYTDKKRTIEAVQRL-RLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p 531 (663)
++++..+++..-.+...+ ..+.++ .++.-..+. +..+.+++.|++.+=.|
T Consensus 70 Iil~v~~~~~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 70 VILLIKAGEAVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred EEEEeCChHHHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 777766654333333333 334555 566654432 34556677788765544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.079 Score=55.90 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=52.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+|.|+|.|.+|..+++.|. +.| .+|.++|+++++.+.+.+.+.....- .+.++. ++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~----------~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-~~~~~~-----~~~aDv 69 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIR----------RLGLAGEIVGADRSAETRARARELGLGDRVT-TSAAEA-----VKGADL 69 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHH----------hcCCCcEEEEEECCHHHHHHHHhCCCCceec-CCHHHH-----hcCCCE
Confidence 357999999999999999997 556 48999999999988887765421111 111222 467999
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
++++++.+.
T Consensus 70 Viiavp~~~ 78 (307)
T PRK07502 70 VILCVPVGA 78 (307)
T ss_pred EEECCCHHH
Confidence 999998754
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.05 Score=55.47 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=68.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+.++|||||.+|+..|+.|+ ..|.+|.|-|.||=.+-.+.-+|++|.. |+++ ++++|.+|
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLk----------g~g~~VivTEiDPI~ALQAaMeG~~V~t--------m~ea-~~e~difV 274 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALK----------GFGARVIVTEIDPICALQAAMEGYEVTT--------LEEA-IREVDIFV 274 (434)
T ss_pred ccEEEEeccCccchhHHHHHh----------hcCcEEEEeccCchHHHHHHhhccEeee--------HHHh-hhcCCEEE
Confidence 457899999999999999998 8999999999999988888878888874 4443 56788787
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
.+|++ .|+......+++..+ .|++..-
T Consensus 275 TtTGc--~dii~~~H~~~mk~d-~IvCN~G 301 (434)
T KOG1370|consen 275 TTTGC--KDIITGEHFDQMKND-AIVCNIG 301 (434)
T ss_pred EccCC--cchhhHHHHHhCcCC-cEEeccc
Confidence 77776 466667777777433 5666443
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.063 Score=57.15 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=65.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE--EEecCCC-----HHHHHhcCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI--LYGDASR-----PAVLLSAGITS 477 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v--i~GD~~~-----~~~L~~a~i~~ 477 (663)
+|.|+|.|.+|..++..|. +.|++|.++++|++.++.+.+.+... +.|.... ...+.++--++
T Consensus 2 kI~IiGaGa~G~ala~~L~----------~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALS----------SKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC
Confidence 4889999999999999997 78999999999999988887643222 2121110 01112221257
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHH--hCCCCcEEEEecChhh
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDMMH 516 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~--~~~~~~iia~~~~~~~ 516 (663)
+|.+++++.+.... .++..++. ..++..++...|--++
T Consensus 72 ~Dliiiavks~~~~-~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 72 ATCIILAVPTQQLR-TICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCEEEEEeCHHHHH-HHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 89999999876432 33344443 4556567776665544
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.041 Score=56.72 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+.+..++.+|.+|++.++++ ...
T Consensus 4 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLA----------AQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 56888886 899999999997 7899999999999988877777788999999999877653 123
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
+.|.+|...+
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6787776553
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=57.21 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=54.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh---cC------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---AG------ 474 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~---a~------ 474 (663)
.+|.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.....++ + ++.-++.+++ .|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La----------~~G~~V~~~D~~~~~v~~l~~g~~~~-~-e~~l~~~l~~~~~~g~l~~~~ 71 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA----------SRQKQVIGVDINQHAVDTINRGEIHI-V-EPDLDMVVKTAVEGGYLRATT 71 (415)
T ss_pred cEEEEECcchhhHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHCCCCCc-C-CCCHHHHHHHHhhcCceeeec
Confidence 46999999999999999998 78999999999999999876544333 2 2222233321 12
Q ss_pred -CCCCcEEEEEcCCH
Q 006034 475 -ITSPKAVMIMYTDK 488 (663)
Q Consensus 475 -i~~a~~vv~~~~dd 488 (663)
.++||.++++.+++
T Consensus 72 ~~~~aDvvii~vptp 86 (415)
T PRK11064 72 TPEPADAFLIAVPTP 86 (415)
T ss_pred ccccCCEEEEEcCCC
Confidence 45899999999874
|
|
| >PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate | Back alignment and domain information |
|---|
Probab=95.31 E-value=5.3 Score=43.24 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=55.6
Q ss_pred hCCcHHHHHHHhhhhccCC----chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHH-HHHHHHHHHHHH
Q 006034 236 LGFSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLAL-LAGLIIIKTLII 310 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~----~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~-~~~~~l~K~~~~ 310 (663)
+.++...+|++.|+++++. +..+--.+.++.+.++..-+|-++.=+++++..+.+.+...+.+ ++..++.-....
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~ 324 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAY 324 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999984 11111122334456777777777777889999988765444433 333333333445
Q ss_pred HHHHhhcCCChHHHH
Q 006034 311 SAIGPRVGLTLQESV 325 (663)
Q Consensus 311 ~~~~~~~g~~~r~~~ 325 (663)
++..+..|.++..+.
T Consensus 325 fv~fr~~gkdydaav 339 (368)
T PF03616_consen 325 FVTFRVMGKDYDAAV 339 (368)
T ss_pred HHhhhhhCCChhHHH
Confidence 556677888874443
|
The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=53.49 Aligned_cols=112 Identities=15% Similarity=0.037 Sum_probs=68.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
-++-|+|+|++|+.+++.|.+ ...+.+++ +.|+++++.+.+.+. +.... .++.+-|. +++|.|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~--------~~~~~el~aV~dr~~~~a~~~a~~~g~~~~---~~~~eell----~~~D~V 71 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDR--------GLPGLTLSAVAVRDPQRHADFIWGLRRPPP---VVPLDQLA----THADIV 71 (271)
T ss_pred eEEEEECccHHHHHHHHHHHh--------cCCCeEEEEEECCCHHHHHHHHHhcCCCcc---cCCHHHHh----cCCCEE
Confidence 479999999999999999961 01467766 679999998776653 32111 23444442 468999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC-----hhhHHHHHHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-----MMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~-----~~~~~~l~~~Gad~vi~p~~ 533 (663)
+++++++.. ...+..+-+.+. .+++.... ++-.+..++.|....+.+-.
T Consensus 72 vi~tp~~~h-~e~~~~aL~aGk--~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa 125 (271)
T PRK13302 72 VEAAPASVL-RAIVEPVLAAGK--KAIVLSVGALLRNEDLIDLARQNGGQIIVPTGA 125 (271)
T ss_pred EECCCcHHH-HHHHHHHHHcCC--cEEEecchhHHhHHHHHHHHHHcCCEEEEcchH
Confidence 999998754 333333334443 45543221 23334456677765554443
|
|
| >TIGR00210 gltS sodium--glutamate symport carrier (gltS) | Back alignment and domain information |
|---|
Probab=95.20 E-value=4.4 Score=44.25 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=61.7
Q ss_pred hCCcHHHHHHHhhhhccCC-c---hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHH-HHH
Q 006034 236 LGFSDTLGAFLAGAILAET-N---FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT-LII 310 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~-~---~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~-~~~ 310 (663)
+.++...+|++.|+++++. + ..+-..+.++.+.++..-+|-+..=|++++..+.+.+...+.+++.-++.-. ...
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999985 1 1122234555567888888888888999999998876655555444444444 344
Q ss_pred HHHHhhcCCChHHHHHH
Q 006034 311 SAIGPRVGLTLQESVRI 327 (663)
Q Consensus 311 ~~~~~~~g~~~r~~~~~ 327 (663)
++..+..|.+ -|+..+
T Consensus 323 fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHhHHhccch-HHHHHH
Confidence 5555667777 555543
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.13 Score=52.88 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=59.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC---CCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~---~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
++.|+|+|++|..+++.|. +.+ +++.++|+++++.+.+.+. +..+. .+..+. ++++|.
T Consensus 4 ~I~iIG~G~mG~~la~~l~----------~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~---~~~~~~-----~~~adv 65 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLL----------ASGVPAKDIIVSDPSPEKRAALAEEYGVRAA---TDNQEA-----AQEADV 65 (267)
T ss_pred EEEEEechHHHHHHHHHHH----------hCCCCcceEEEEcCCHHHHHHHHHhcCCeec---CChHHH-----HhcCCE
Confidence 5899999999999999997 455 6899999999998888764 44321 122222 357899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 514 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~ 514 (663)
+++++.++. ...++..++... +..++.-.+.-
T Consensus 66 Vil~v~~~~-~~~v~~~l~~~~-~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVKPQV-MEEVLSELKGQL-DKLVVSIAAGV 97 (267)
T ss_pred EEEEcCHHH-HHHHHHHHHhhc-CCEEEEecCCC
Confidence 999987653 333333444432 32345444444
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.16 Score=45.17 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=65.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|+|+|++|+.-.+.+.+ ...+.+++ +.|.|+++.+...+ .+.+ .+.| -++.+++. +.|.++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~--------~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~--~~~ll~~~---~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLR--------SSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTD--LEELLADE---DVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHH--------TTTTEEEEEEECSSHHHHHHHHHHTTSE-EESS--HHHHHHHT---TESEEE
T ss_pred EEEEECCcHHHHHHHHHHHh--------cCCCcEEEEEEeCCHHHHHHHHHHhccc-chhH--HHHHHHhh---cCCEEE
Confidence 58999999999999988862 12455654 77999999888654 5666 4444 23455543 789999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL 520 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l 520 (663)
++|+++. ....+..+-+.+. ++++. +.+.+..+.+
T Consensus 68 I~tp~~~-h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 68 IATPPSS-HAEIAKKALEAGK--HVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp EESSGGG-HHHHHHHHHHTTS--EEEEESSSSSSHHHHHHH
T ss_pred EecCCcc-hHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHH
Confidence 9999854 4555555555542 67664 3344444433
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.057 Score=56.60 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=51.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|++.++..+..+.+.+.|..+. +.+- -+++||.|
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~----------d~G~~ViV~~r~~~s~~~A~~~G~~v~-----sl~E----aak~ADVV 75 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLR----------DSGVEVVVGVRPGKSFEVAKADGFEVM-----SVSE----AVRTAQVV 75 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHH----------HCcCEEEEEECcchhhHHHHHcCCEEC-----CHHH----HHhcCCEE
Confidence 3467999999999999999998 899999999865555555555666432 2222 24678999
Q ss_pred EEEcCCHHH
Q 006034 482 MIMYTDKKR 490 (663)
Q Consensus 482 v~~~~dd~~ 490 (663)
++..+|++.
T Consensus 76 ~llLPd~~t 84 (335)
T PRK13403 76 QMLLPDEQQ 84 (335)
T ss_pred EEeCCChHH
Confidence 999998643
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.14 Score=54.01 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=51.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCC-----------EEEecCCCH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFP-----------ILYGDASRP 467 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~-----------vi~GD~~~~ 467 (663)
++|.|+|.|.+|..++..|. +.|++|+++|.|++..+.+.+. +.. -+... +|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~- 72 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA----------RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AG- 72 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CC-
Confidence 46999999999999999997 7899999999999987776541 110 01111 11
Q ss_pred HHHHhcCCCCCcEEEEEcCCHH
Q 006034 468 AVLLSAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~dd~ 489 (663)
+++ .++++|.|+.++.++.
T Consensus 73 --~~~-~~~~aDlVi~av~~~~ 91 (311)
T PRK06130 73 --LAA-AVSGADLVIEAVPEKL 91 (311)
T ss_pred --HHH-HhccCCEEEEeccCcH
Confidence 111 2568899999998764
|
|
| >COG2855 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.37 Score=50.53 Aligned_cols=107 Identities=22% Similarity=0.145 Sum_probs=77.6
Q ss_pred HHHHhCCcHHHHHHHhhhhccCC-chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHH
Q 006034 232 LTQKLGFSDTLGAFLAGAILAET-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLII 310 (663)
Q Consensus 232 l~~~~G~s~~lgAflaGl~l~~~-~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~ 310 (663)
..+..|+++..=|.+.|++++.. +.+++..+-++--...+..+=-+..|++++++++.+.-...+.+.+..+..-++..
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~ 110 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFA 110 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 45566777888899999999954 33333333333335677777788999999999997653445555666677778888
Q ss_pred HHHHhhcCCChHHHHHHHHhhhhhhhHH
Q 006034 311 SAIGPRVGLTLQESVRIGLLLSQGGEFA 338 (663)
Q Consensus 311 ~~~~~~~g~~~r~~~~~g~~l~~~G~~~ 338 (663)
++.++++|+|++.+..+|.+-+-=|.-+
T Consensus 111 ~~lg~~lgld~~~a~Lia~GssICGasA 138 (334)
T COG2855 111 YFLGKLLGLDKKLALLIAAGSSICGASA 138 (334)
T ss_pred HHHHHHhCCCHHHHHHHHccchhhHHHH
Confidence 8889999999999999998655555333
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.078 Score=57.31 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=55.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|.|+|.|.+|..+++.|. +.|+++.+.+.|++..+.....+..+..-..++ +++ -++++|.||.+
T Consensus 2 ~I~iIG~GliG~siA~~L~----------~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~aDlVila 67 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIK----------AAGPDVFIIGYDPSAAQLARALGFGVIDELAAD---LQR-AAAEADLIVLA 67 (359)
T ss_pred eEEEEEeCHHHHHHHHHHH----------hcCCCeEEEEeCCCHHHHHHHhcCCCCcccccC---HHH-HhcCCCEEEEe
Confidence 6899999999999999998 788999999999887655544443332211112 222 25789999999
Q ss_pred cCCHHHHHHHHHHHH
Q 006034 485 YTDKKRTIEAVQRLR 499 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r 499 (663)
++.+. ....+...+
T Consensus 68 vP~~~-~~~vl~~l~ 81 (359)
T PRK06545 68 VPVDA-TAALLAELA 81 (359)
T ss_pred CCHHH-HHHHHHHHh
Confidence 99864 334444444
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.27 Score=54.95 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=73.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCC--EEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~--vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|-++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.+.. -+.+ ..+.+-+. ..++++|.|+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~----------~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~-~~s~~e~v-~~l~~~dvIi 68 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMA----------DHGFTVSVYNRTPEKTDEFLAEHAKGKKIVG-AYSIEEFV-QSLERPRKIM 68 (467)
T ss_pred CEEEEeeHHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHHhhccCCCCcee-cCCHHHHH-hhcCCCCEEE
Confidence 3678999999999999998 7899999999999999988864111 0111 23333332 1356789888
Q ss_pred EEcCCHHHHHHHHHHH-HHhCCCCcEEEEecC------hhhHHHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAVQRL-RLAFPAIPIYARAQD------MMHLLDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~------~~~~~~l~~~Gad~vi~p 531 (663)
++..+++..-.+...+ ..+.++ .++.-..+ .+..+.+++.|+..+=.|
T Consensus 69 l~v~~~~~v~~Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi~fvdap 123 (467)
T TIGR00873 69 LMVKAGAPVDAVINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGILFVGSG 123 (467)
T ss_pred EECCCcHHHHHHHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCCEEEcCC
Confidence 8887754322232333 334555 56665543 224456677788765555
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.86 Score=52.09 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=49.0
Q ss_pred HHHHHhhhhccCC--chhhHHHhhhhc-hhhhhHHHHHHHhccccChhHHhh----hHHHHHHHHHHHHHHHHHHHHHHH
Q 006034 242 LGAFLAGAILAET--NFRTQIEADIRP-FRGLLLGLFFVTTGSSIDIELLFR----EWPNVLALLAGLIIIKTLIISAIG 314 (663)
Q Consensus 242 lgAflaGl~l~~~--~~~~~i~~~~~~-~~~~~~plFFv~vG~~l~~~~l~~----~~~~~l~~~~~~~l~K~~~~~~~~ 314 (663)
-|++++|++++.. .++.++.+.... ++++...+|...+|.+.-+..+.. .|...+. .++..+.-.+.++...
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLF-AVLIVILGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4777888888862 122223333333 478999999999999998766532 2333222 2223333344455666
Q ss_pred hhcCCChHHH
Q 006034 315 PRVGLTLQES 324 (663)
Q Consensus 315 ~~~g~~~r~~ 324 (663)
+++|+++-..
T Consensus 113 ~~~~~~~~~~ 122 (552)
T PRK03818 113 KLFGIPLPVM 122 (552)
T ss_pred HHhCCCHHHH
Confidence 7788876633
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.24 Score=57.81 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
....+|.|+|+|++|+.+++.|. +.|++|++.|++++. +.+.+.|... .++.+-+.+ +++|.
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~a~~~Gv~~----~~~~~el~~---~~aDv 428 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMV----------KQGHTVLAYSRSDYS-DEAQKLGVSY----FSDADDLCE---EHPEV 428 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHH----------HCcCEEEEEECChHH-HHHHHcCCeE----eCCHHHHHh---cCCCE
Confidence 35568999999999999999997 678999999998654 4455555431 123332211 35899
Q ss_pred EEEEcCCHHHHHHHHHHHH--HhCCCCcEEEEecCh--hhHHHHHH---cCCCeE
Q 006034 481 VMIMYTDKKRTIEAVQRLR--LAFPAIPIYARAQDM--MHLLDLKK---AGATDA 528 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r--~~~~~~~iia~~~~~--~~~~~l~~---~Gad~v 528 (663)
|++++..+. +..++.... .+.|+ .+++-+.+- ...+.+++ .|.+.+
T Consensus 429 VILavP~~~-~~~vi~~l~~~~lk~g-~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 429 ILLCTSILS-TEKVLKSLPFQRLKRS-TLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred EEECCChHH-HHHHHHHHHHhcCCCC-cEEEECCCccHHHHHHHHHhccCCCceE
Confidence 999998643 333333333 23344 566655433 23333433 355544
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.15 Score=53.85 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=48.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEe-CChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD-LNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid-~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+++.|+|+|++|+.+++.|. +.|.++++.+ .+++..+.+.+.|..+. +..+. +++||.|+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~----------~sG~~Viv~~~~~~~~~~~a~~~Gv~~~----s~~ea-----~~~ADiVv 64 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLR----------DSGLNVIVGLRKGGASWKKATEDGFKVG----TVEEA-----IPQADLIM 64 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHH----------HCCCeEEEEECcChhhHHHHHHCCCEEC----CHHHH-----HhcCCEEE
Confidence 56999999999999999997 6788877654 44556666666666421 12222 46789999
Q ss_pred EEcCCH
Q 006034 483 IMYTDK 488 (663)
Q Consensus 483 ~~~~dd 488 (663)
+++.++
T Consensus 65 LaVpp~ 70 (314)
T TIGR00465 65 NLLPDE 70 (314)
T ss_pred EeCCcH
Confidence 999986
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >TIGR00844 c_cpa1 na(+)/h(+) antiporter | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.56 Score=54.96 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=56.8
Q ss_pred hhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHHhhhhhhhH
Q 006034 267 FRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPR--VGLTLQESVRIGLLLSQGGEF 337 (663)
Q Consensus 267 ~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~--~g~~~r~~~~~g~~l~~~G~~ 337 (663)
+..+.+++--+..|++++...+...|..+..+++..+..-++.+.+++++ .|++|..++.+|.+++|-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 56778888888999999999999888887766666666666666666554 499999999999999887654
|
This model is specific for the fungal members of this family. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.016 Score=56.41 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=48.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcC----------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG---------- 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~---------- 474 (663)
+|.|+|.|.+|..+|-.|. +.|++|+.+|.|+++++.+.+...++ + ++..++.+++..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA----------~~G~~V~g~D~~~~~v~~l~~g~~p~-~-E~~l~~ll~~~~~~~~l~~t~~ 69 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALA----------EKGHQVIGVDIDEEKVEALNNGELPI-Y-EPGLDELLKENVSAGRLRATTD 69 (185)
T ss_dssp EEEEE--STTHHHHHHHHH----------HTTSEEEEE-S-HHHHHHHHTTSSSS---CTTHHHHHHHHHHTTSEEEESE
T ss_pred EEEEECCCcchHHHHHHHH----------hCCCEEEEEeCChHHHHHHhhccccc-c-ccchhhhhccccccccchhhhh
Confidence 5889999999999999998 89999999999999999988744444 2 455556665432
Q ss_pred ----CCCCcEEEEEcCC
Q 006034 475 ----ITSPKAVMIMYTD 487 (663)
Q Consensus 475 ----i~~a~~vv~~~~d 487 (663)
++++|+++++.+.
T Consensus 70 ~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 70 IEEAIKDADVVFICVPT 86 (185)
T ss_dssp HHHHHHH-SEEEE----
T ss_pred hhhhhhccceEEEecCC
Confidence 4468888777753
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.084 Score=55.16 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=35.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
++|.|+|.|.+|..+|..+. ..|++|+++|.|++..+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA----------FHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHH
Confidence 47999999999999999997 78999999999998876654
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.092 Score=54.47 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=58.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|.|.+|..+++.|. +.|+ ++.+.|+++++.+.+.+.|.... .++. +++ .++|.||
T Consensus 2 ~I~iIG~G~mG~sla~~l~----------~~g~~~~v~~~d~~~~~~~~~~~~g~~~~---~~~~---~~~--~~aD~Vi 63 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALK----------EKGLISKVYGYDHNELHLKKALELGLVDE---IVSF---EEL--KKCDVIF 63 (275)
T ss_pred EEEEEccCHHHHHHHHHHH----------hcCCCCEEEEEcCCHHHHHHHHHCCCCcc---cCCH---HHH--hcCCEEE
Confidence 4889999999999999997 5554 68888999999888877664211 1122 222 2489999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
++++.+...-.+ ..++.+.++ .++.-+.+
T Consensus 64 lavp~~~~~~~~-~~l~~l~~~-~iv~d~gs 92 (275)
T PRK08507 64 LAIPVDAIIEIL-PKLLDIKEN-TTIIDLGS 92 (275)
T ss_pred EeCcHHHHHHHH-HHHhccCCC-CEEEECcc
Confidence 999986543333 233334445 45554443
|
|
| >TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.46 Score=54.05 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHH
Q 006034 226 VAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIII 305 (663)
Q Consensus 226 ~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~ 305 (663)
+.+...+++.+++++.++-+++|++++..+....+.-.-+.+..++.|......|.++|++.+.+++..++.+.+..++.
T Consensus 10 ~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vli 89 (525)
T TIGR00831 10 ATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVV 89 (525)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455678889999999999999988853221111111112345788888899999999999988876665554444444
Q ss_pred HHHH-HHHHHhhcCCChHHHHHHHHhhhhhhhHHH
Q 006034 306 KTLI-ISAIGPRVGLTLQESVRIGLLLSQGGEFAF 339 (663)
Q Consensus 306 K~~~-~~~~~~~~g~~~r~~~~~g~~l~~~G~~~l 339 (663)
-.+. .+...+..++|+..++.+|..++|...+..
T Consensus 90 t~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 90 TTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 4433 333334578999999999999888876553
|
This model is specific for the bacterial members of this family. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.22 Score=51.10 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=75.9
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEE-EeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|+ |++|+.+++.+.+ .++.+++. +|.++++.+...+.+.. ..+|.+-+. +++|+|+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~---------~~~~elvav~d~~~~~~~~~~~~~i~----~~~dl~~ll----~~~DvVi 65 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEA---------AEDLELVAAVDRPGSPLVGQGALGVA----ITDDLEAVL----ADADVLI 65 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccccCCCCcc----ccCCHHHhc----cCCCEEE
Confidence 6899998 9999999999862 45666554 78888765433111111 123333332 3689887
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHH--cCCCeEEcCchHHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKK--AGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~--~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
..++.+ .....+..+.+.+. +++.-. -++++.+.+.+ .++..++.|+.-.+..+...+++
T Consensus 66 d~t~p~-~~~~~~~~al~~G~--~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~ 129 (257)
T PRK00048 66 DFTTPE-ATLENLEFALEHGK--PLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAE 129 (257)
T ss_pred ECCCHH-HHHHHHHHHHHcCC--CEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHH
Confidence 666543 33556666666664 444332 15556655554 67778999998777777766655
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.28 Score=53.57 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=49.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHH------------h
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL------------S 472 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~------------~ 472 (663)
+|.|+|.|.+|..+|..+. .|++|+++|.|+++++.+.+...+. +.... ++.++ .
T Consensus 2 kI~VIGlGyvGl~~A~~lA-----------~G~~VigvD~d~~kv~~l~~g~~~~-~e~~l-~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-----------QNHEVVALDILPSRVAMLNDRISPI-VDKEI-QQFLQSDKIHFNATLDKN 68 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-----------hCCcEEEEECCHHHHHHHHcCCCCC-CCcCH-HHHHHhCCCcEEEecchh
Confidence 4789999999999998774 4899999999999999888632222 11111 01110 0
Q ss_pred cCCCCCcEEEEEcCCH
Q 006034 473 AGITSPKAVMIMYTDK 488 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd 488 (663)
.-++++|.++++++++
T Consensus 69 ~~~~~ad~vii~Vpt~ 84 (388)
T PRK15057 69 EAYRDADYVIIATPTD 84 (388)
T ss_pred hhhcCCCEEEEeCCCC
Confidence 1147899999999865
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.063 Score=56.21 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=35.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
++|.|+|.|.+|..++..|. ..|++|+++|.|++..+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA----------RTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHH
Confidence 47999999999999999997 7899999999999988754
|
|
| >COG2855 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=6.2 Score=41.57 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=71.6
Q ss_pred cccCchhHHHHHHHHHHhccCCCcC--Cchh----HHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQLGIIR--NLTD----VKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~glv~--~~~~----l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
...++|..+--|+.||++|.+...+ -... -+.+-++|+++ -|.+++++++.+.+.+.+.+....+..+++
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSSTFL 108 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHHHH
Confidence 4567889999999999999643221 1122 34577777775 489999999999998888777776666665
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVL 130 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~ 130 (663)
....+ .-++| .++..++++|+-.+....+-++
T Consensus 109 ~~~~l-------------g~~lg--------ld~~~a~Lia~GssICGasAia 140 (334)
T COG2855 109 FAYFL-------------GKLLG--------LDKKLALLIAAGSSICGASAIA 140 (334)
T ss_pred HHHHH-------------HHHhC--------CCHHHHHHHHccchhhHHHHHH
Confidence 54433 23566 7899999999777665544443
|
|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.97 Score=54.31 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCCchh--h---------HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR--T---------QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWP 293 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~--~---------~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~ 293 (663)
+.-.+.++...+|.+.++|=.++|++++.+-.+ + +-.+.++.+..+-.-+|.+.+|+++|+..+.+...
T Consensus 54 ~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k 133 (832)
T PLN03159 54 TTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGK 133 (832)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcch
Confidence 334556677888899999999999988864111 1 11224555666777778889999999999876533
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.08 Score=56.43 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=60.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--ec-----CCCHHHHHhcCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GD-----ASRPAVLLSAGITS 477 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--GD-----~~~~~~L~~a~i~~ 477 (663)
+|.|+|.|.+|..++..|. +.|++|.+.++++++.+.+.+.+.+..+ |. ..-.+.++++ +++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~----------~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~ 74 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAA----------SKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAG 74 (328)
T ss_pred eEEEECcCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcC
Confidence 6999999999999999997 7899999999999988887764221111 10 0001112222 367
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+|.+++++.++.. -..++.+.|...++...+
T Consensus 75 aD~Vi~~v~~~~~----~~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 75 ADFAVVAVPSKAL----RETLAGLPRALGYVSCAK 105 (328)
T ss_pred CCEEEEECchHHH----HHHHHhcCcCCEEEEEee
Confidence 9999999998742 222355555544554444
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.042 Score=58.02 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=56.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|.|. |-+|+.+++.|. +.|++|++++++++..+...+.+..++.+|.+|++.++++ ++++|.++-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~d~vi~ 70 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLL----------EQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-VAGCRALFH 70 (328)
T ss_pred eEEEECCccchhHHHHHHHH----------HCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4788885 999999999998 7899999999988775555455788999999999888764 356777765
Q ss_pred Ec
Q 006034 484 MY 485 (663)
Q Consensus 484 ~~ 485 (663)
+.
T Consensus 71 ~a 72 (328)
T TIGR03466 71 VA 72 (328)
T ss_pred ec
Confidence 43
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.099 Score=57.15 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH------HHH--hcCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK------ESR--KLGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~------~~~--~~~~~vi~GD~~~~~~L~~a 473 (663)
..+++|.|. |.+|+.+++.|. ++|++|++++++++..+ ... ..+..++.||.+|++.++++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELV----------RRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKV 129 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHH
Confidence 346888886 999999999997 78999999999876432 111 14678999999999988765
Q ss_pred CCC---CCcEEEEEc
Q 006034 474 GIT---SPKAVMIMY 485 (663)
Q Consensus 474 ~i~---~a~~vv~~~ 485 (663)
--+ ++|.|+.+.
T Consensus 130 ~~~~~~~~D~Vi~~a 144 (390)
T PLN02657 130 LFSEGDPVDVVVSCL 144 (390)
T ss_pred HHHhCCCCcEEEECC
Confidence 222 688887543
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.13 Score=51.21 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=57.5
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CC--CCCc
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI--TSPK 479 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i--~~a~ 479 (663)
.++|.| .|.+|+.+++.|. ++|++|++++++++..+.+.+.+...+.+|.+|++.++++ .+ .+.|
T Consensus 3 ~vlvtG~sg~iG~~la~~L~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYR----------ADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred eEEEEcCCCchhHHHHHHHH----------hCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 577777 5899999999997 7899999999999988888777778899999999988763 22 3467
Q ss_pred EEEEEc
Q 006034 480 AVMIMY 485 (663)
Q Consensus 480 ~vv~~~ 485 (663)
.++...
T Consensus 73 ~vi~~a 78 (222)
T PRK06953 73 AAVYVA 78 (222)
T ss_pred EEEECC
Confidence 766643
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.28 Score=51.94 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--ecCCC--HHHHHh-cCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GDASR--PAVLLS-AGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--GD~~~--~~~L~~-a~i~~ 477 (663)
+.+|.|+|.|.+|..++..|. +.|++|.++.+++. +...+.+...-. |+..- ...... ...+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~----------~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLA----------RAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPP 72 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCC
Confidence 347999999999999999998 78999999999874 445555543321 21100 000000 12457
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-cCCCeEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDAI 529 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~-~Gad~vi 529 (663)
+|.+++++..... ..++..++. ..++..++...|--.+.+.+.+ .+-.+|+
T Consensus 73 ~D~vilavK~~~~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 73 CDWVLVGLKTTAN-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLL 125 (313)
T ss_pred CCEEEEEecCCCh-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEE
Confidence 8999999876432 233333443 4566667777777777666654 3444443
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.51 Score=48.86 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=49.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++.++|+|++|..+++.|. +.| .++.+.|+++++.+.+.+ .+..+. .+..+. ++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~----------~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~---~~~~e~-----~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI----------NKNIVSPDQIICSDLNVSNLKNASDKYGITIT---TNNNEV-----ANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHH----------HCCCCCCceEEEECCCHHHHHHHHHhcCcEEe---CCcHHH-----HhhC
Confidence 36999999999999999997 333 469999999999888775 553221 122333 3477
Q ss_pred cEEEEEcCCH
Q 006034 479 KAVMIMYTDK 488 (663)
Q Consensus 479 ~~vv~~~~dd 488 (663)
|.++.+..++
T Consensus 65 DiIiLavkP~ 74 (272)
T PRK12491 65 DILILSIKPD 74 (272)
T ss_pred CEEEEEeChH
Confidence 9898888864
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.073 Score=57.98 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~ 474 (663)
.+|+|.|. |-+|+.+++.|. ++ +++|+++|++++..+.+.+ .+..++.||.+|++.++++
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~----------~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~- 83 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLM----------TETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL- 83 (386)
T ss_pred cEEEEECCcchHHHHHHHHHH----------hcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-
Confidence 46999986 999999999997 55 6899999988776655432 2477899999999988765
Q ss_pred CCCCcEEEEE
Q 006034 475 ITSPKAVMIM 484 (663)
Q Consensus 475 i~~a~~vv~~ 484 (663)
++++|.||=+
T Consensus 84 ~~~~d~ViHl 93 (386)
T PLN02427 84 IKMADLTINL 93 (386)
T ss_pred hhcCCEEEEc
Confidence 3467877643
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.28 Score=51.75 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=59.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-----------hcCCCE------EEe--cC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----------KLGFPI------LYG--DA 464 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-----------~~~~~v------i~G--D~ 464 (663)
.+|.|+|.|.+|..++..|. +.|++|++.|++++..+... +.+..- ..+ +.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la----------~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~ 72 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFA----------RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV 72 (308)
T ss_pred cEEEEECccHHHHHHHHHHH----------HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE
Confidence 36999999999999999998 78999999999998776543 222100 000 01
Q ss_pred CCHHHHHhcCCCCCcEEEEEcCCHH-HHHHHHHHHHHhCCCCcEEE
Q 006034 465 SRPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 465 ~~~~~L~~a~i~~a~~vv~~~~dd~-~n~~~~~~~r~~~~~~~iia 509 (663)
+ ..+.+ -++++|.++.++.++. .+......+++..++-.+++
T Consensus 73 ~--~~~~~-a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ 115 (308)
T PRK06129 73 T--DSLAD-AVADADYVQESAPENLELKRALFAELDALAPPHAILA 115 (308)
T ss_pred E--CcHHH-hhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE
Confidence 1 11222 2468999999998863 33443444555544434554
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.11 Score=51.86 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=58.6
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEe-------cC-CCHHHHHhcCC
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG-------DA-SRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~G-------D~-~~~~~L~~a~i 475 (663)
+|.|+| .|++|..+++.|. +.|++|++.++++++.+.+.+...+.+.. .. ++.+. +
T Consensus 2 kI~IIGG~G~mG~ala~~L~----------~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-----~ 66 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLA----------KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEA-----A 66 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHH----------hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHH-----H
Confidence 488997 8999999999997 77899999999999887765421111100 01 22222 4
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 514 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~ 514 (663)
+++|.+++++..+... .++...+....+ +++.-+.+.
T Consensus 67 ~~aDvVilavp~~~~~-~~l~~l~~~l~~-~vvI~~~ng 103 (219)
T TIGR01915 67 KRADVVILAVPWDHVL-KTLESLRDELSG-KLVISPVVP 103 (219)
T ss_pred hcCCEEEEECCHHHHH-HHHHHHHHhccC-CEEEEeccC
Confidence 5789999998876432 222333333234 555555444
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.12 Score=56.32 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCCcEEEE----cC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH-----------HHHhcCCCEEEecCC
Q 006034 402 GSEPVVIV----GF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----------ESRKLGFPILYGDAS 465 (663)
Q Consensus 402 ~~~~viI~----G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~-----------~~~~~~~~vi~GD~~ 465 (663)
..++|+|+ |. |.+|+.+++.|. +.|++|++++++++..+ .+.+.+..++.||.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~ 120 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELV----------KAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPA 120 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHH----------HCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHH
Confidence 44679999 65 999999999997 78999999999876432 223456889999998
Q ss_pred CHHHHHhcCCCCCcEEEEEcCCHH-HHHHHHHHHHHhCCC
Q 006034 466 RPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPA 504 (663)
Q Consensus 466 ~~~~L~~a~i~~a~~vv~~~~dd~-~n~~~~~~~r~~~~~ 504 (663)
|.+.+. ...++|.|+-+.+.+. ....++..+++.+.+
T Consensus 121 d~~~~~--~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvk 158 (378)
T PLN00016 121 DVKSKV--AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLK 158 (378)
T ss_pred HHHhhh--ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 833221 2346888776655432 223345556666644
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.38 Score=53.97 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=76.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..+|-++|.|.+|..+|+.|. +.|++|.|-|+++++++.+.+. |...+.+ ..+++-+- .+++++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~----------~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~-a~s~~e~v-~~l~~~ 73 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIA----------EKGFPISVYNRTTSKVDETVERAKKEGNLPLYG-FKDPEDFV-LSIQKP 73 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHH----------hCCCeEEEECCCHHHHHHHHHhhhhcCCccccc-CCCHHHHH-hcCCCC
Confidence 346999999999999999998 8999999999999999887753 3221111 12232221 256679
Q ss_pred cEEEEEcCCHHHHHHHH-HHHHHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcC
Q 006034 479 KAVMIMYTDKKRTIEAV-QRLRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~-~~~r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p 531 (663)
|.|+.+..+++.--.+. ..+..+.|+ .++.-..+. +..+.+++.|+..+=.|
T Consensus 74 dvIi~~v~~~~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 74 RSVIILVKAGAPVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred CEEEEECCCcHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 99999998875432222 223334555 666655443 33455677788766555
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.14 Score=53.47 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=79.8
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHH----------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---------- 468 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~---------- 468 (663)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++..+...+. ...+-.|-.++++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~ 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA----------RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe
Confidence 47999999999999999997 7899999999999987663210 0001112111110
Q ss_pred --HHHhcCCCCCcEEEEEcCCHHHHHH-HHHHHHHh--CCCCcEEEEecChhhHHHHHHc--------CCCeEEcCchHH
Q 006034 469 --VLLSAGITSPKAVMIMYTDKKRTIE-AVQRLRLA--FPAIPIYARAQDMMHLLDLKKA--------GATDAILENAET 535 (663)
Q Consensus 469 --~L~~a~i~~a~~vv~~~~dd~~n~~-~~~~~r~~--~~~~~iia~~~~~~~~~~l~~~--------Gad~vi~p~~~~ 535 (663)
-++ .++++|.|+-+..+|.+--. +-..+.+. .|+ .+++...+.-....+... |. +.++|...+
T Consensus 76 ~~~~~--~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~~~r~~g~-hf~~P~~~~ 151 (286)
T PRK07819 76 TTDLG--DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKRPGRVLGL-HFFNPVPVL 151 (286)
T ss_pred eCCHH--HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCCCccEEEE-ecCCCcccC
Confidence 111 14789999999888743222 22233344 344 455544433233333221 22 344543222
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 006034 536 SLQLGSKLLKGFGVMSDDVTFLRQLVR 562 (663)
Q Consensus 536 ~~~la~~~~~~~~~~~~~~~~~~~~~~ 562 (663)
... ++...-+.++.+++.....+.
T Consensus 152 ~lv---Elv~~~~T~~~~~~~~~~~~~ 175 (286)
T PRK07819 152 PLV---ELVPTLVTSEATVARAEEFAS 175 (286)
T ss_pred ceE---EEeCCCCCCHHHHHHHHHHHH
Confidence 111 344445666777777766654
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.28 Score=51.02 Aligned_cols=37 Identities=24% Similarity=0.536 Sum_probs=33.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK 450 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~ 450 (663)
++|.|+|.|.+|..++..+. ..|++|+++|.|+++.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la----------~~g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA----------VAGYDVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH----------HCCCceEEEeCCHHHHH
Confidence 36999999999999999997 77999999999999885
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.19 Score=52.15 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=67.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH--HHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP--AVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~--~~L~~a~i~~a~~ 480 (663)
..+++|+|.|.+|..+++.|+ +.|+.+.+++.|+......+.....+ .|+ +........+||.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~----------~~g~~v~i~g~d~~~~~~~~a~~lgv-----~d~~~~~~~~~~~~~aD~ 67 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALK----------EAGLVVRIIGRDRSAATLKAALELGV-----IDELTVAGLAEAAAEADL 67 (279)
T ss_pred CcEEEEECCchHHHHHHHHHH----------HcCCeEEEEeecCcHHHHHHHhhcCc-----ccccccchhhhhcccCCE
Confidence 467999999999999999998 89999988888877654444322222 222 1112345678999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHcCCC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGAT 526 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--~~~~~l~~~Gad 526 (663)
||++++=....-.+...+..+.++ .++.-+.+. .-.+.+++.+.+
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g-~iv~Dv~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKG-AIVTDVGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCC-CEEEecccccHHHHHHHHHhccC
Confidence 999998654444444444444444 466555443 233444554433
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.085 Score=52.85 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a--- 473 (663)
.+.++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+.+ .+.+++.+|.+|++.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALL----------AEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHH----------HCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 356888885 999999999997 679999999999987665543 3467789999999876542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.++...
T Consensus 76 ~~~~~~~~d~vi~~a 90 (237)
T PRK07326 76 IVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHcCCCCEEEECC
Confidence 123678777554
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.12 Score=52.40 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=57.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
++++|.|. |.+|+.+++.|. +.|++|++.+++++..+.+.+ .+..++.+|.+|++.++++--.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLA----------RKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW 72 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC
Confidence 46888886 899999999997 789999999999877655543 2467889999999999887444
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.+|-..
T Consensus 73 ~id~vi~~a 81 (257)
T PRK09291 73 DVDVLLNNA 81 (257)
T ss_pred CCCEEEECC
Confidence 788777654
|
|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.31 Score=53.14 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=129.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HH-----hcCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SR-----KLGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~-----~~~~~vi~GD~~~~~~L~~ 472 (663)
..+||++|-----...+-+.|++.-+- ....++-++=.+|...+. +. +...+.++|....++-|++
T Consensus 286 ~e~hvvv~~ttl~~~~i~dfl~efyah-----p~~q~~~ivllsp~eld~~~rmllkiplwnnrvhyv~gs~lrd~dl~r 360 (1087)
T KOG3193|consen 286 VESHVVVTITTLEVEFIRDFLEEFYAH-----PENQRIQIVLLSPAELDNQTRMLLKIPLWNNRVHYVRGSSLRDEDLER 360 (1087)
T ss_pred ccceEEEEEeeeeHHHHHHHHHHHhcC-----cccccEEEEEechHHhcchhhhheeccccccceeeecccccccchhhh
Confidence 457999998776667777777532222 123344444444544322 11 3568889999999999999
Q ss_pred cCCCCCcEEEEEcC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHH
Q 006034 473 AGITSPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLL 544 (663)
Q Consensus 473 a~i~~a~~vv~~~~--------dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~ 544 (663)
|++..+++..+... .||.+++-.-..|...|+++-++.+-.+++.--.+ -|.++|++.+.-=-.+|+...
T Consensus 361 a~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv~qyvqifr~e~k~hi~--~ae~~icedefkyallannc~ 438 (1087)
T KOG3193|consen 361 ANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNVKQYVQIFRAETKMHIE--HAEVLICEDEFKYALLANNCI 438 (1087)
T ss_pred hhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCchHHHhhhhchhhhhhhh--hheeEEehhhHHHHHHhcCCc
Confidence 99999987665542 37788888888999999998777776666644333 356788887543333444433
Q ss_pred HhcCCCHHHHHHH--HHHHhccccc-chhhhcccCCc-chhcccc---------------------------cccchhhh
Q 006034 545 KGFGVMSDDVTFL--RQLVRNSMEI-QAQEVLSQKDD-QEFDIMK---------------------------PLQVRVAD 593 (663)
Q Consensus 545 ~~~~~~~~~~~~~--~~~~~~~~~~-~~~e~~~~~~~-~~~~~~~---------------------------~~~~~~~~ 593 (663)
. |..-.++ +-|-.++.|- +-.|-+.+.-. ..+.-++ +.++..-.
T Consensus 439 c-----pg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~sfhahk~ygi~li~ 513 (1087)
T KOG3193|consen 439 C-----PGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSSTSFHAHKEYGIGLIA 513 (1087)
T ss_pred C-----CCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchhhhhhhhhcCeEEEE
Confidence 3 4332222 2222333211 11111111000 0011111 11111111
Q ss_pred hhhccCCCCCCCc-ccccCCCCCCCCcCCCCCCceEEEeecCCCccccccCCC
Q 006034 594 IVEAEKTIPSTSN-DDKLSREDNTDTAGEDAKGVLYCELNGTNNFLDQTKGAG 645 (663)
Q Consensus 594 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 645 (663)
+. |-- .+.....|.++..+++.|.+-|.|.-...+.-|-.||.-
T Consensus 514 v~--------p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ee~~td~r~g~~ 558 (1087)
T KOG3193|consen 514 VS--------PDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLTDFRKGIR 558 (1087)
T ss_pred Ec--------CCCCcceeecCCCcccccCCCCeEEEEecccccchhhhhhhhh
Confidence 11 111 233556688899999999999999988888777666643
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.29 Score=48.26 Aligned_cols=90 Identities=19% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh-------------------HHHHHH----Hhc--
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVKES----RKL-- 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~-------------------~~~~~~----~~~-- 455 (663)
.+.+|+|+|.|.+|..+++.|. ..|. +++++|.|. .+++.+ ++.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La----------~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLA----------GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHH----------HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 4568999999999999999998 6776 899999982 233322 221
Q ss_pred CCC--EEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCC
Q 006034 456 GFP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP 503 (663)
Q Consensus 456 ~~~--vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~ 503 (663)
... .+..+.++ +.+.+ -++++|.||.++++-+.-..+...+++.+.
T Consensus 90 ~v~i~~~~~~i~~-~~~~~-~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 90 DIQVTALKERVTA-ENLEL-LINNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred CCEEEEehhcCCH-HHHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 222 22233333 32322 367899998888887777777788888763
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.088 Score=59.38 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|+.|...++.|. ..|.+|++.|.++++.+.+++.|..++.|+- +++. ++++|.|
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~----------~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~-~~~~-----l~~~D~V 74 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALT----------RFGARPTVCDDDPDALRPHAERGVATVSTSD-AVQQ-----IADYALV 74 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHhCCCEEEcCcc-hHhH-----hhcCCEE
Confidence 3468999999999999999997 8999999999888777667777776665533 2222 3567877
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
|...+-+..|- ....+|+.+ ++|+.+
T Consensus 75 V~SpGi~~~~p-~~~~a~~~g--i~v~~~ 100 (488)
T PRK03369 75 VTSPGFRPTAP-VLAAAAAAG--VPIWGD 100 (488)
T ss_pred EECCCCCCCCH-HHHHHHHCC--CcEeeH
Confidence 77665544443 355566653 445543
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.36 Score=49.99 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=61.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+|.|+|+|++|..+++.|. +.| .++.+.|+++++.+.+.+. +..+ ..+..+.+ +++
T Consensus 2 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~---~~~~~~~~-----~~a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL----------ESGAVKPSQLTITNRTPAKAYHIKERYPGIHV---AKTIEEVI-----SQS 63 (273)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCHHHHHHHHHHcCCeEE---ECCHHHHH-----HhC
Confidence 4889999999999999997 445 4799999999998877653 2222 12233333 468
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~ 522 (663)
|.+++++.++. ...++...+. +.++ +++..+.+....+.+++
T Consensus 64 DiVilav~p~~-~~~vl~~l~~~l~~~-~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 64 DLIFICVKPLD-IYPLLQKLAPHLTDE-HCLVSITSPISVEQLET 106 (273)
T ss_pred CEEEEecCHHH-HHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHH
Confidence 98988887543 3333333333 3334 45554444334555544
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.17 Score=53.68 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=49.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++|-|+|+|++|+.+++.|. +.|++|++.+++.++ .+.+.+.|..+. +.++. +++||.|
T Consensus 17 gktIgIIG~GsmG~AlA~~L~----------~sG~~Vvv~~r~~~~s~~~A~~~G~~~~----s~~ea-----a~~ADVV 77 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLR----------DSGVDVVVGLREGSKSWKKAEADGFEVL----TVAEA-----AKWADVI 77 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHH----------HCCCEEEEEECCchhhHHHHHHCCCeeC----CHHHH-----HhcCCEE
Confidence 457999999999999999998 789999988776544 344445565431 22223 4578999
Q ss_pred EEEcCCHHH
Q 006034 482 MIMYTDKKR 490 (663)
Q Consensus 482 v~~~~dd~~ 490 (663)
+++++++..
T Consensus 78 vLaVPd~~~ 86 (330)
T PRK05479 78 MILLPDEVQ 86 (330)
T ss_pred EEcCCHHHH
Confidence 999997644
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.13 Score=51.02 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=56.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
++++|.|. |.+|+.+++.|. ++ ++|++++++++..+.+.+ .+..++.+|.+|++.++++ .+++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~----------~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 4 PTALITGASRGIGAAIARELA----------PT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHH----------hh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCC
Confidence 46888875 889999999997 55 999999999887666553 3578899999999888763 23467
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.+|-+.+
T Consensus 73 d~vi~~ag 80 (227)
T PRK08219 73 DVLVHNAG 80 (227)
T ss_pred CEEEECCC
Confidence 88776543
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.096 Score=56.29 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
+...+++|.|. |-+|+.+++.|. +.|++|++++++++..+...+ .+..++.+|.+|++.++++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 76 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLL----------QRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA- 76 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH-
Confidence 35567999995 899999999998 789999999988776544332 2466889999999888765
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
+++.|.||-+.
T Consensus 77 ~~~~d~Vih~A 87 (353)
T PLN02896 77 VKGCDGVFHVA 87 (353)
T ss_pred HcCCCEEEECC
Confidence 34567666544
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.27 Score=54.52 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=59.6
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-hcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|+| .|.+|..+++.|. +.|++|.+.|+|++..+... +.+..+ .++.+ ..++++|.|+
T Consensus 2 kI~IIGG~G~mG~slA~~L~----------~~G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~----e~~~~aDvVI 63 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLK----------EKGFEVIVTGRDPKKGKEVAKELGVEY----ANDNI----DAAKDADIVI 63 (437)
T ss_pred EEEEEecCCHHHHHHHHHHH----------HCCCEEEEEECChHHHHHHHHHcCCee----ccCHH----HHhccCCEEE
Confidence 488997 7999999999997 78899999999998865444 344321 12221 1256789999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
++++.+...-.+...+..+.++ .++.-+.+
T Consensus 64 lavp~~~~~~vl~~l~~~l~~~-~iViDvsS 93 (437)
T PRK08655 64 ISVPINVTEDVIKEVAPHVKEG-SLLMDVTS 93 (437)
T ss_pred EecCHHHHHHHHHHHHhhCCCC-CEEEEccc
Confidence 9999865543333334444555 45554444
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.022 Score=53.84 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=50.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE-----------EEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-----------LYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v-----------i~GD~~~~~~L~~a 473 (663)
+|.|+|.|++|..+|..|. ++|++|.+..+|++.++.+.+.+.+. ++- -+|.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la----------~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~----~ 65 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA----------DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLE----E 65 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHH----H
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHH----H
Confidence 3789999999999999998 78999999999999999888633210 111 12321 1
Q ss_pred CCCCCcEEEEEcCCHHH
Q 006034 474 GITSPKAVMIMYTDKKR 490 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~ 490 (663)
-+++||.++++++....
T Consensus 66 a~~~ad~IiiavPs~~~ 82 (157)
T PF01210_consen 66 ALEDADIIIIAVPSQAH 82 (157)
T ss_dssp HHTT-SEEEE-S-GGGH
T ss_pred HhCcccEEEecccHHHH
Confidence 24688999999888644
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.13 Score=51.85 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeC----------ChHHHHHHHhc-CCCEEE--ec-CCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDL----------NPSVVKESRKL-GFPILY--GD-ASR 466 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~----------d~~~~~~~~~~-~~~vi~--GD-~~~ 466 (663)
...+++|.|+|++|+.+++.|. +.|.+|+ +.|. |.+.+....+. +...-+ +. ..+
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~----------~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~ 99 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLH----------EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN 99 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence 3468999999999999999997 7799999 7788 77777666542 211111 11 122
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE-ecC---hhhHHHHHHcCCCeEEcCch
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR-AQD---MMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~-~~~---~~~~~~l~~~Gad~vi~p~~ 533 (663)
++++. .++|.++=++..+..|-. .+.++. +++|+. +|+ ++..+.|++-|+ ++.|..
T Consensus 100 ~~i~~----~~~Dvlip~a~~~~i~~~---~~~~l~--a~~I~egAN~~~t~~a~~~L~~rGi--~~~PD~ 159 (227)
T cd01076 100 EELLE----LDCDILIPAALENQITAD---NADRIK--AKIIVEAANGPTTPEADEILHERGV--LVVPDI 159 (227)
T ss_pred cccee----ecccEEEecCccCccCHH---HHhhce--eeEEEeCCCCCCCHHHHHHHHHCCC--EEEChH
Confidence 33332 278988777766544444 455554 466664 333 567888999887 455763
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.1 Score=52.21 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=54.4
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcC--C-CCCc
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG--I-TSPK 479 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~--i-~~a~ 479 (663)
+++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ .+..++.+|.+|++.++++- + ++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id 71 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFR----------NDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLD 71 (223)
T ss_pred eEEEEeCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCc
Confidence 4778876 899999999997 789999999999998876654 35778999999998776541 1 2467
Q ss_pred EEEEE
Q 006034 480 AVMIM 484 (663)
Q Consensus 480 ~vv~~ 484 (663)
.+|-.
T Consensus 72 ~lv~~ 76 (223)
T PRK05884 72 TIVNV 76 (223)
T ss_pred EEEEC
Confidence 66643
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.23 Score=45.89 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=57.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh--------------HH-----HH----HHHhc--CC-
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP--------------SV-----VK----ESRKL--GF- 457 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~--------------~~-----~~----~~~~~--~~- 457 (663)
+++|+|.|.+|..+++.|. ..|. +++++|.|. +. ++ .+++. +.
T Consensus 1 ~VliiG~GglGs~ia~~L~----------~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~ 70 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA----------RSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVN 70 (143)
T ss_pred CEEEECCCHHHHHHHHHHH----------HCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcE
Confidence 5899999999999999998 6776 699999882 21 22 22221 22
Q ss_pred -CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 458 -PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 458 -~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
..+..+.+++.. ..-++++|.+|.++++.+....+...+|+.+
T Consensus 71 i~~~~~~~~~~~~--~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~ 114 (143)
T cd01483 71 VTAVPEGISEDNL--DDFLDGVDLVIDAIDNIAVRRALNRACKELG 114 (143)
T ss_pred EEEEeeecChhhH--HHHhcCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 223444444332 2335689988888888777777778888875
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.64 Score=43.69 Aligned_cols=56 Identities=20% Similarity=0.444 Sum_probs=43.1
Q ss_pred CchhHHHHHHHHHHhccCCC------cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhh
Q 006034 7 CRSQILGFFFAGIVLNQLGI------IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAK 62 (663)
Q Consensus 7 ~lP~ivg~ilaGillGp~gl------v~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~ 62 (663)
++-...|-+++|+++|.++- --+......+.++|+.++++.+|++--.+.+...++
T Consensus 20 ~LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~ 81 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKD 81 (154)
T ss_pred EecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 33347799999999998652 123456788999999999999999999886665544
|
This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.22 Score=58.09 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=62.2
Q ss_pred ccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 399 NYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 399 ~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+...+.++.|+|+|++|+.+++.|. +.|++|+++|++.+. +.+.+.|... .+|.+-+ -.+++
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~A~~~Gv~~----~~d~~e~---~~~~a 109 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLI----------SQGHTVLAHSRSDHS-LAARSLGVSF----FLDPHDL---CERHP 109 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHH-HHHHHcCCEE----eCCHHHH---hhcCC
Confidence 3445568999999999999999997 678999999998654 4445555432 2333322 12468
Q ss_pred cEEEEEcCCHHHHHHHHHHHH--HhCCCCcEEEEecChh
Q 006034 479 KAVMIMYTDKKRTIEAVQRLR--LAFPAIPIYARAQDMM 515 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r--~~~~~~~iia~~~~~~ 515 (663)
|.|++++..+. ...++.... .+.++ .+++-+.+-+
T Consensus 110 DvViLavP~~~-~~~vl~~l~~~~l~~g-~iVvDv~SvK 146 (667)
T PLN02712 110 DVILLCTSIIS-TENVLKSLPLQRLKRN-TLFVDVLSVK 146 (667)
T ss_pred CEEEEcCCHHH-HHHHHHhhhhhcCCCC-eEEEECCCCc
Confidence 99999999653 333333222 23444 4666555544
|
|
| >PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) | Back alignment and domain information |
|---|
Probab=94.12 E-value=9.2 Score=40.47 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccCHH
Q 006034 33 VKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSID 112 (663)
Q Consensus 33 l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~ 112 (663)
.+....+++..++|..|+.++.+++++..|+.-.... ....++++.-.+ |..+ ..+++. ...
T Consensus 29 ~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll--------~~~~-~~l~~~--------~~~ 90 (313)
T PF13593_consen 29 PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLL--------GFGL-SRLFPA--------FLP 90 (313)
T ss_pred hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHH--------HHHH-HHHhhc--------cCC
Confidence 3477888899999999999999999987665433322 233444443332 1111 222221 112
Q ss_pred HHHHHHHHHHhhhHHHHHH-H-HhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 006034 113 EAVVIGAALSLSSSAFVLQ-L-LAEKGELPTRFGSATLGILLLQDIAVVPLLVI 164 (663)
Q Consensus 113 ~alllg~~ls~TS~~vv~~-i-l~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i 164 (663)
..+..|..+...-|..+.. + +.+ ..+.+. ..++-.+.+..+.++++.-+
T Consensus 91 ~~l~~Gl~~~~~lPtTv~S~v~~T~--~AgGN~-a~Al~~~~~snllgv~ltP~ 141 (313)
T PF13593_consen 91 PELALGLLILACLPTTVSSSVVLTR--LAGGNV-ALALFNAVLSNLLGVFLTPL 141 (313)
T ss_pred HHHHHHHHHHhhCCchhhHHHHHHH--HcCCCH-HHHHHHHHHHhhhhHhHHHH
Confidence 3466665555444433222 1 111 122232 34556667777777766533
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.085 Score=50.95 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+++.|+ ..|.+|.+.|+.++..+...+.+... + +-++.++ ++|.+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~~~~~~~~~~~~---~-~l~ell~-----~aDiv 95 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLK----------AFGMRVIGYDRSPKPEEGADEFGVEY---V-SLDELLA-----QADIV 95 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSCHHHHHHHHTTEEE---S-SHHHHHH-----H-SEE
T ss_pred CCCEEEEEEEcCCcCeEeeeee----------cCCceeEEecccCChhhhccccccee---e-ehhhhcc-----hhhhh
Confidence 4568999999999999999998 89999999999998766344333311 1 2234443 58888
Q ss_pred EEEcCCHH--HHHHHHHHHHHhCCC
Q 006034 482 MIMYTDKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~--~n~~~~~~~r~~~~~ 504 (663)
++..+-.+ .++.-....+++.++
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk~g 120 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMKPG 120 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTSTTT
T ss_pred hhhhccccccceeeeeeeeeccccc
Confidence 88877432 344444455555544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.14 Score=51.35 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=55.6
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
.++++|.|. |.+|+.+++.|. +.|+ +|+++++++++.+. ...+..++.+|.+|++.++++ ...+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~----------~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~i 74 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLL----------ARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDV 74 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 357888885 999999999998 7888 99999999887654 334577889999998877653 23456
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.+|-..+
T Consensus 75 d~vi~~ag 82 (238)
T PRK08264 75 TILVNNAG 82 (238)
T ss_pred CEEEECCC
Confidence 77655543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.44 Score=47.39 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCCh------------------HHHHHH----Hh--cC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVKES----RK--LG 456 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~------------------~~~~~~----~~--~~ 456 (663)
.+.+|+|+|.|-+|..+++.|. ..|.. ++++|.|. .+++.+ ++ ..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALA----------RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCC
Confidence 3568999999999999999997 56765 99999982 122222 22 12
Q ss_pred --CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q 006034 457 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 457 --~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~ 501 (663)
...+..+.+++ .+. .-++++|.||.++++-+.-..+...+++.
T Consensus 97 v~v~~~~~~i~~~-~~~-~~~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 97 VEIEAHNEKIDED-NIE-ELFKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred CEEEEEeeecCHH-HHH-HHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 22333444433 222 23578998888887766655566667776
|
|
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.033 Score=51.31 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=51.6
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~ 485 (663)
.+|+|.|..++.+++... ..|++|+++|.++++.. ...-+. ....++..++..++..++| ++|
T Consensus 1 L~I~GaG~va~al~~la~----------~lg~~v~v~d~r~e~~~-----~~~~~~-~~~~~~~~~~~~~~~~t~V-v~t 63 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAA----------LLGFRVTVVDPRPERFP-----EADEVI-CIPPDDILEDLEIDPNTAV-VMT 63 (136)
T ss_dssp EEEES-STCHHHHHHHHH----------HCTEEEEEEES-CCC-T-----TSSEEE-CSHHHHHHHHC-S-TT-EE-E--
T ss_pred CEEEeCcHHHHHHHHHHH----------hCCCEEEEEcCCccccC-----CCCccE-ecChHHHHhccCCCCCeEE-EEc
Confidence 479999999999999997 78999999999988654 222222 2223555677788888876 566
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 486 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 486 ~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.+-+....+...+-+.. .+-+...-+...
T Consensus 64 h~h~~D~~~L~~~l~~~--~~YiG~lGS~~k 92 (136)
T PF13478_consen 64 HDHELDAEALEAALASP--ARYIGLLGSRRK 92 (136)
T ss_dssp S-CCCHHHHHHHHTTSS---SEEEESS-HHH
T ss_pred CCchhHHHHHHHHHcCC--CCEEEeecCchH
Confidence 65333334444444443 344554444433
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.13 Score=51.86 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=55.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ ....++.+|.+|++.++++
T Consensus 7 k~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 7 PRALITGASSGIGKATALAFA----------KAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHH
Confidence 46888886 899999999997 789999999999887655543 2456789999999866443
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|-+.+
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 2245787776553
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.44 Score=45.87 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCcEEEEcCC--cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGFG--QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~g--~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a 473 (663)
.+++.=+|+| .++-..+ +. .+..+|+.||+|+++.+..++ ++..++.||+ |+.|.
T Consensus 35 g~~l~DIGaGtGsi~iE~a--~~----------~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~-- 98 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWA--LA----------GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP-- 98 (187)
T ss_pred CCEEEEeCCCccHHHHHHH--Hh----------CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc--
Confidence 3455555554 5555555 43 688899999999999877653 4567888877 56776
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH----HHHHcCCCeEE
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL----DLKKAGATDAI 529 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~----~l~~~Gad~vi 529 (663)
++.+.|++++.-+...+.++ =.....+.|.-++|+.+.+.++.. .+++.|...++
T Consensus 99 ~~~~~daiFIGGg~~i~~il-e~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 99 DLPSPDAIFIGGGGNIEEIL-EAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred CCCCCCEEEECCCCCHHHHH-HHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 55689999888774433332 222334456668999888876654 44666664333
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.5 Score=49.41 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=35.8
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
++|.|+|.|.+|..++..|. ..|++|++.|.|++..+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA----------LAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHH
Confidence 56999999999999999997 78999999999999877643
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.13 Score=53.02 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=58.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.+++++..+.+.+.+...+.+|.+|++.++++ ...
T Consensus 2 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFK----------AAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred CEEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 36788886 889999999997 7899999999999988877777788899999998877542 224
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
+.|.+|-..+
T Consensus 72 ~id~vi~~ag 81 (274)
T PRK05693 72 GLDVLINNAG 81 (274)
T ss_pred CCCEEEECCC
Confidence 6787776654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.13 Score=51.87 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=49.2
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhc
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a 473 (663)
.++|.| .|.+|+.+++.|. ++|++|+++++|+++.+.+.+. ...++.+|.+|++-++++
T Consensus 3 ~vlItGas~giG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYA----------KQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHH
Confidence 477887 4999999999997 7899999999999888777653 467889999999977654
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.48 Score=49.25 Aligned_cols=86 Identities=9% Similarity=0.143 Sum_probs=54.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCCh-HHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~-~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
++.++|.|++|..+++.|. +.| +++.+.++++ ++.+.+.+ .+.... . +..+. ++++
T Consensus 5 kI~~IG~G~mG~aia~~l~----------~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~--~~~e~-----~~~a 66 (279)
T PRK07679 5 NISFLGAGSIAEAIIGGLL----------HANVVKGEQITVSNRSNETRLQELHQKYGVKGT-H--NKKEL-----LTDA 66 (279)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-C--CHHHH-----HhcC
Confidence 6999999999999999997 444 7889999866 46666654 354322 1 12222 3578
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYAR 510 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~ 510 (663)
|.|++++.++...- .+...+. ..++ +++.-
T Consensus 67 DvVilav~p~~~~~-vl~~l~~~~~~~-~liIs 97 (279)
T PRK07679 67 NILFLAMKPKDVAE-ALIPFKEYIHNN-QLIIS 97 (279)
T ss_pred CEEEEEeCHHHHHH-HHHHHHhhcCCC-CEEEE
Confidence 99999998764322 2233333 3344 44444
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.22 Score=53.41 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=63.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEE-Ee-cCC------CHHHHHhcC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPIL-YG-DAS------RPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi-~G-D~~------~~~~L~~a~ 474 (663)
..+|.|+|.|.+|..++..|. +.| ++++..+|++.++.+.+.+.+.- .+ +.. -.+-+.+ .
T Consensus 7 ~mkI~IiGaGa~G~alA~~La----------~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICA----------RRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-A 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-H
Confidence 347999999999999999997 566 68888899999988886542211 11 100 0011222 2
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhh
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMH 516 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~ 516 (663)
++++|.+++++..... -.++..++. +.++..++..++--++
T Consensus 75 ~~~aDlVilavps~~~-~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 75 ANCADVVVMGVPSHGF-RGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HhcCCEEEEEeCHHHH-HHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 5788999999986432 233334443 4555557776664443
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.14 Score=57.58 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=59.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-H----HHHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-V----VKESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~----~~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++++|+|.|..|..+|+.|. +.|++|+++|.+++ . .+.+++.|..+..|+..+ ...+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~ 78 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALL----------ELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPED 78 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCC
Confidence 458999999999999999997 78999999996542 2 344666788888876543 2356
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+|.||+.++-...| .....+|+.+
T Consensus 79 ~D~Vv~s~Gi~~~~-~~~~~a~~~g 102 (480)
T PRK01438 79 TDLVVTSPGWRPDA-PLLAAAADAG 102 (480)
T ss_pred CCEEEECCCcCCCC-HHHHHHHHCC
Confidence 89888777654333 3445555554
|
|
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.6 Score=46.91 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEE-EeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~ 479 (663)
..++++|+|.|+-|+.+++.+.+ ..+.+++++. +|.|++... .-.+.+++ |+..| ++..++ .+.|
T Consensus 124 ~~~rvLIvGag~~a~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~--~i~g~pVl-g~~~~l~~~i~~---~~id 190 (445)
T TIGR03025 124 NLRRVLIVGTGEAARELAAALSR-------NPDLGYRVVGFVDDRPSDRV--EVAGLPVL-GKLDDLVELVRA---HRVD 190 (445)
T ss_pred CCCcEEEEECCHHHHHHHHHHhh-------CccCCeEEEEEEeCCccccc--ccCCCccc-CCHHHHHHHHHh---CCCC
Confidence 34679999999999999999962 0123555554 576655421 12355544 44332 223333 5677
Q ss_pred EEEEEcCCHH--HHHHHHHHHHHhCCCCcEEE
Q 006034 480 AVMIMYTDKK--RTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 480 ~vv~~~~dd~--~n~~~~~~~r~~~~~~~iia 509 (663)
.|+++.++.+ .-..+...+++.+.+++++-
T Consensus 191 ~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 191 EVIIALPLSEEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred EEEEecCcccHHHHHHHHHHHHhcCCEEEEeC
Confidence 7877776643 22345667777765544443
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.46 Score=46.79 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC---hHHHH-------------------HHHh--c-
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN---PSVVK-------------------ESRK--L- 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d---~~~~~-------------------~~~~--~- 455 (663)
.+.+|.|+|.|-+|..+++.|. ..|. +++++|.| ++... .+.+ .
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLA----------RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHH----------HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC
Confidence 4568999999999999999998 6788 59999999 33211 1111 1
Q ss_pred -CCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 456 -GFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 456 -~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
....+..+.++++ +.+ -++++|.||-++++.+.-..+...+.+..+...+++
T Consensus 90 ~~i~~~~~~i~~~~-~~~-~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 90 TEIEAYDEKITEEN-IDK-FFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred CEEEEeeeeCCHhH-HHH-HhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1223344444333 322 246789888787665544443433333333334454
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.096 Score=56.23 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~ 472 (663)
.+++++|.|. |-+|+.+++.|. +.|++|++++++++..+...+ ..+.++.||.+|++.+++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLL----------ERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHH----------HCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH
Confidence 4567999986 999999999997 789999999888765543322 135678999999988876
Q ss_pred cCCCCCcEEEEEc
Q 006034 473 AGITSPKAVMIMY 485 (663)
Q Consensus 473 a~i~~a~~vv~~~ 485 (663)
+ ++++|.|+-+.
T Consensus 74 ~-~~~~d~ViH~A 85 (351)
T PLN02650 74 A-IRGCTGVFHVA 85 (351)
T ss_pred H-HhCCCEEEEeC
Confidence 4 44577776543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.15 Score=51.35 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=57.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc--CCCCCc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA--GITSPK 479 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a--~i~~a~ 479 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ .+..++.+|.+|++.++++ .....|
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALA----------QRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 57899997 799999999997 789999999999988776655 3577889999998876553 234568
Q ss_pred EEEEEc
Q 006034 480 AVMIMY 485 (663)
Q Consensus 480 ~vv~~~ 485 (663)
.+|-..
T Consensus 80 ~vi~~a 85 (245)
T PRK07060 80 GLVNCA 85 (245)
T ss_pred EEEECC
Confidence 776554
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.52 Score=48.14 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=58.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.++|.|. |.+|+.++++|. +.+++|++.-+++++..... .+..+..+|..+++.+..+ .+..+.++.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~----------~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a-~~G~~~~~~ 69 (275)
T COG0702 2 KILVTGATGFVGGAVVRELL----------ARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAG-AKGVDGVLL 69 (275)
T ss_pred eEEEEecccchHHHHHHHHH----------hCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHH-hccccEEEE
Confidence 4677765 999999999998 67999999999999999888 8899999999999999875 455555555
Q ss_pred EcC
Q 006034 484 MYT 486 (663)
Q Consensus 484 ~~~ 486 (663)
+..
T Consensus 70 i~~ 72 (275)
T COG0702 70 ISG 72 (275)
T ss_pred Eec
Confidence 544
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.17 Score=56.56 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=63.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-----HHHHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-----~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.+++.|+|+|..|+.+++.|. +.|++|.+.|.++. ..+.+.+.|..+..|+.. ++-+ .+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~-----~~ 77 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLV----------KLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY-LDKL-----DG 77 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHH----------HCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hHHh-----cc
Confidence 357999999999999999997 89999999997753 224566778888877554 2222 56
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
+|.||...+=+. +-.....||+.+ ++++.+.
T Consensus 78 ~dlVV~Spgi~~-~~p~~~~a~~~~--i~i~s~~ 108 (458)
T PRK01710 78 FDVIFKTPSMRI-DSPELVKAKEEG--AYITSEM 108 (458)
T ss_pred CCEEEECCCCCC-CchHHHHHHHcC--CcEEech
Confidence 787766543333 334566777765 5676544
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.22 Score=54.02 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|+|.|. |-+|+.+++.|. +.|++|+++++.+............++.||.+|.+.+.++ ++++|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~----------~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLK----------AEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKV-TKGVDH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHH----------hCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHH-HhCCCE
Confidence 4568999998 999999999997 7899999999764321100112356788999999887764 246787
Q ss_pred EEEEc
Q 006034 481 VMIMY 485 (663)
Q Consensus 481 vv~~~ 485 (663)
|+-+.
T Consensus 89 Vih~A 93 (370)
T PLN02695 89 VFNLA 93 (370)
T ss_pred EEEcc
Confidence 66554
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.17 Score=55.79 Aligned_cols=40 Identities=28% Similarity=0.539 Sum_probs=36.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 454 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~ 454 (663)
+|.|+|.|.+|..++..|. +.|++|+++|.|+++++.+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La----------~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA----------DLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHH----------hcCCeEEEEECCHHHHHHhhc
Confidence 4889999999999999997 789999999999999988775
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.41 Score=50.45 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=81.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHH-HHHh---c----CC-CEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK-ESRK---L----GF-PILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~-~~~~---~----~~-~vi~GD~~~~~~L~~a 473 (663)
.++.|+|.|.+|..+|..+. ..|+ +|+++|.+++..+ ...+ . .. .-+... +| +++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la----------~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t-~d---~~~- 66 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA----------EKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGT-NN---YAD- 66 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEec-CC---HHH-
Confidence 36999999999999999987 5554 8999999877543 2111 1 11 122211 22 222
Q ss_pred CCCCCcEEEEEcCC----H-------HHHHHHHH----HHHHhCCCCcEEEEecChhhHH---HHHHcCC--CeEEcCc-
Q 006034 474 GITSPKAVMIMYTD----K-------KRTIEAVQ----RLRLAFPAIPIYARAQDMMHLL---DLKKAGA--TDAILEN- 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d----d-------~~n~~~~~----~~r~~~~~~~iia~~~~~~~~~---~l~~~Ga--d~vi~p~- 532 (663)
+++||.+|++.+. + ..|..+.. .+++.+|+. ++..+.||.+.- ..+..|. .+|+---
T Consensus 67 -~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~-~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~ 144 (305)
T TIGR01763 67 -TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNP-IIVVVSNPLDAMTYVAWQKSGFPKERVIGQAG 144 (305)
T ss_pred -hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHHHCcCHHHEEEecc
Confidence 5789999988872 1 24665544 355667774 455555554332 2344344 3466553
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~~ 556 (663)
..-+.++-+.+-+.+++++..+..
T Consensus 145 ~lds~R~~~~la~~l~v~~~~v~~ 168 (305)
T TIGR01763 145 VLDSARFRTFIAMELGVSVQDVTA 168 (305)
T ss_pred chHHHHHHHHHHHHhCcCHHHeee
Confidence 444445666777777888866543
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.74 Score=47.80 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=58.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCCh-HHHHHHHhcCCCE-EEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRKLGFPI-LYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~-~~~~~~~~~~~~v-i~GD~~~~~~L~~a~i~~a 478 (663)
++.|+|+|++|..+++.|. +.+ +++.++++++ ++.+.+.+....+ +.. +..+. ++++
T Consensus 3 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~--~~~e~-----~~~a 65 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLL----------ETEVATPEEIILYSSSKNEHFNQLYDKYPTVELAD--NEAEI-----FTKC 65 (277)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeC--CHHHH-----HhhC
Confidence 5889999999999999997 444 6899999865 4455544321111 111 11222 3578
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHcC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKAG 524 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~~G 524 (663)
|.+++++..+. -..++..++. +.++..++...+--+..++-+..+
T Consensus 66 DvVilavpp~~-~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~ 111 (277)
T PRK06928 66 DHSFICVPPLA-VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITP 111 (277)
T ss_pred CEEEEecCHHH-HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC
Confidence 99998888643 2333333433 334434555555444433333333
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.76 Score=49.22 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------------cCCCEEEecCCC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------------LGFPILYGDASR 466 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------------~~~~vi~GD~~~ 466 (663)
...++|+++|+|. |..+.+.|+ .....++++||.|++.++.+++ .+..++.||+.+
T Consensus 149 ~~PkrVLIIGgGd-G~tlrelLk---------~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~ 218 (374)
T PRK01581 149 IDPKRVLILGGGD-GLALREVLK---------YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE 218 (374)
T ss_pred CCCCEEEEECCCH-HHHHHHHHh---------cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH
Confidence 4557999999984 555555564 1334689999999998887663 346678888873
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHH----HH----HHHHHHHHhCCCCcEEEEecC
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKR----TI----EAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~----n~----~~~~~~r~~~~~~~iia~~~~ 513 (663)
.+++. -++.|.|++-..|... .+ ......+.+.|+--+++..++
T Consensus 219 --fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 219 --FLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred --HHHhc-CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 34443 2578988888765321 11 233445557777444444433
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.69 Score=50.41 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=78.0
Q ss_pred cEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCC-EE-EecC---------------CC
Q 006034 405 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-IL-YGDA---------------SR 466 (663)
Q Consensus 405 ~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~-vi-~GD~---------------~~ 466 (663)
+++++|.|++|+ .+...|. +.|++|+.+|.+++.++.+.++|.. +. .|+. ++
T Consensus 2 ki~~~GaGa~gr~~~~~~l~----------~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~ 71 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLA----------DNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADE 71 (381)
T ss_pred ceEEECCchhhHHHHHHHHH----------hCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCH
Confidence 589999999999 5577776 7889999999999999999887743 22 2333 11
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHH-H----HHHHHHHHHHh---CCCCcEEEEecChhhHHHHHHc-CCCeEEcCchHHHH
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKK-R----TIEAVQRLRLA---FPAIPIYARAQDMMHLLDLKKA-GATDAILENAETSL 537 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~-~----n~~~~~~~r~~---~~~~~iia~~~~~~~~~~l~~~-Gad~vi~p~~~~~~ 537 (663)
+++++ .+.++|.+..++.... . .+.-.+..|.. .+...+++-.|-..+.+.+++. +-. .+.
T Consensus 72 ~~~~~--~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~~~---~~~----- 141 (381)
T PRK02318 72 EAVIE--AIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVLKA---LSE----- 141 (381)
T ss_pred HHHHH--HhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHHHh---CCH-----
Confidence 12222 2346675554444321 1 11122223332 3444677777778887887765 211 121
Q ss_pred HHHHHHHHhcCCCHHHHHHH
Q 006034 538 QLGSKLLKGFGVMSDDVTFL 557 (663)
Q Consensus 538 ~la~~~~~~~~~~~~~~~~~ 557 (663)
..+.-+-...+++...++++
T Consensus 142 ~~~~wi~~~~~f~~t~VDrI 161 (381)
T PRK02318 142 DEKAWLEEHVGFVDSAVDRI 161 (381)
T ss_pred HHHHHHHhcCCCCCcHHhcC
Confidence 34444445556666555554
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.21 Score=52.85 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|+.++... +.....+ .. .|++ -++++|.++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~----------afG~~V~~~~~~~~~~~-----~~~~~~~-~~---~l~e-~l~~aDvvv 195 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQ----------TWGFPLRCWSRSRKSWP-----GVQSFAG-RE---ELSA-FLSQTRVLI 195 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCCC-----Cceeecc-cc---cHHH-HHhcCCEEE
Confidence 457999999999999999997 78999999998765422 2222211 11 2221 246789999
Q ss_pred EEcCCHHHHHHH--HHHHHHhCCCC
Q 006034 483 IMYTDKKRTIEA--VQRLRLAFPAI 505 (663)
Q Consensus 483 ~~~~dd~~n~~~--~~~~r~~~~~~ 505 (663)
++.+.++.|..+ ....+.+.|+.
T Consensus 196 ~~lPlt~~T~~li~~~~l~~mk~ga 220 (312)
T PRK15469 196 NLLPNTPETVGIINQQLLEQLPDGA 220 (312)
T ss_pred ECCCCCHHHHHHhHHHHHhcCCCCc
Confidence 988876655443 34455565553
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.61 Score=49.48 Aligned_cols=142 Identities=14% Similarity=0.119 Sum_probs=89.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH--HHHHhcCCCEEEecC-CCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRKLGFPILYGDA-SRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~--~~~~~~~~~vi~GD~-~~~~~L~~a~i~~a 478 (663)
..+|.|+|. |++|..++..|.. .....+++++|.++... ..+.+........+. .+++ +. ..++++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~--------~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d-~~-~~l~~a 87 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKM--------NPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQ-LG-DALKGA 87 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh--------CCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCC-HH-HHcCCC
Confidence 458999999 9999999999861 12334799999988221 122222222222232 2222 22 357889
Q ss_pred cEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh------HHHHHH-cCC--CeEEcCchH
Q 006034 479 KAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH------LLDLKK-AGA--TDAILENAE 534 (663)
Q Consensus 479 ~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~------~~~l~~-~Ga--d~vi~p~~~ 534 (663)
|.||++.+. | ..|.. ++..+++.+|+ .++.-+.||.+ ...+.+ .|- ++++--...
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L 166 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 166 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence 998888764 1 23444 45667778888 45555666654 222333 333 677776667
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~ 555 (663)
-+.++...+-+.+++++..++
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~ 187 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVD 187 (323)
T ss_pred hHHHHHHHHHHHhCCChhheE
Confidence 777888888888888885554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.34 Score=47.58 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=64.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.+.|+|.|++|..+++.+. +.|++|++.-++ |+..+.+.+.-...+.|- +.++ -.+.||.|+.
T Consensus 3 ~~~i~GtGniG~alA~~~a----------~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~-~~~d-----A~~~aDVVvL 66 (211)
T COG2085 3 IIAIIGTGNIGSALALRLA----------KAGHEVIIGSSRGPKALAAAAAALGPLITGG-SNED-----AAALADVVVL 66 (211)
T ss_pred EEEEeccChHHHHHHHHHH----------hCCCeEEEecCCChhHHHHHHHhhccccccC-ChHH-----HHhcCCEEEE
Confidence 5899999999999999998 899999999554 444554444333334432 1222 2467898888
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
+.+= +....+....++...+ +|+.-+.++-.
T Consensus 67 AVP~-~a~~~v~~~l~~~~~~-KIvID~tnp~~ 97 (211)
T COG2085 67 AVPF-EAIPDVLAELRDALGG-KIVIDATNPIE 97 (211)
T ss_pred eccH-HHHHhHHHHHHHHhCC-eEEEecCCCcc
Confidence 8886 4555566666665545 88888888743
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.14 Score=52.76 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=54.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHh--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS-- 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~-- 472 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~ 73 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELA----------KKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQ 73 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHH
Confidence 46888885 899999999997 789999999999887655432 235678999999987753
Q ss_pred ---cCCCCCcEEEEEcC
Q 006034 473 ---AGITSPKAVMIMYT 486 (663)
Q Consensus 473 ---a~i~~a~~vv~~~~ 486 (663)
....+.|.+|-+.+
T Consensus 74 ~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 74 LVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHhcCCeeEEEECCc
Confidence 12245687776653
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.34 E-value=1 Score=46.47 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=65.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCC-EEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWP-FVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~-vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|+|++|+.+++.+.+ .. +.+ +.+.|+|+++.+.+.+. +..+ + +|.+-+- .++|.|
T Consensus 3 rIgIIG~G~iG~~ia~~l~~---------~~~~~elv~v~d~~~~~a~~~a~~~~~~~-~---~~~~ell----~~~DvV 65 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILS---------GRINAELYAFYDRNLEKAENLASKTGAKA-C---LSIDELV----EDVDLV 65 (265)
T ss_pred EEEEECccHHHHHHHHHHHc---------CCCCeEEEEEECCCHHHHHHHHHhcCCee-E---CCHHHHh----cCCCEE
Confidence 58999999999999999862 22 444 55789999998877652 3222 1 2333232 579999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhH----HHHHHcCCCeEEcCc
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHL----LDLKKAGATDAILEN 532 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~----~~~~~----~~l~~~Gad~vi~p~ 532 (663)
+.+++.+.. ...+..+.+.+++ +++... |++.. +..++.|....+.+.
T Consensus 66 vi~a~~~~~-~~~~~~al~~Gk~--Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sg 121 (265)
T PRK13304 66 VECASVNAV-EEVVPKSLENGKD--VIIMSVGALADKELFLKLYKLAKENNCKIYLPSG 121 (265)
T ss_pred EEcCChHHH-HHHHHHHHHcCCC--EEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCc
Confidence 999876543 4444445455544 444221 33322 234556775555443
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.73 Score=48.74 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=84.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH---HHHHhcC-CCEEEe-cCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRKLG-FPILYG-DASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~---~~~~~~~-~~vi~G-D~~~~~~L~~a~i~~a 478 (663)
++.|+|. |++|+.++..|... ...++.++++|.++... -.+.+.+ ...+.| +..|. .+ .++++
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~-------~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~--~~--~l~~~ 70 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQ-------LPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDP--TP--ALEGA 70 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcC-------CCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCH--HH--HcCCC
Confidence 6899999 99999999887410 03456899999886531 1222212 245666 22331 12 23679
Q ss_pred cEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHHH------H-HHcCC--CeEEcCchH
Q 006034 479 KAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLLD------L-KKAGA--TDAILENAE 534 (663)
Q Consensus 479 ~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~~~------l-~~~Ga--d~vi~p~~~ 534 (663)
|.||++.+. | ..|. .++...++.+|+ .++..+.||.+.-- + +..|. .+|+---..
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~L 149 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTL 149 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecH
Confidence 999888764 1 1232 345566777888 67888888874211 1 23233 456655545
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~ 555 (663)
-..++-+.+-+.+++++..++
T Consensus 150 ds~R~~~~ia~~l~~~~~~v~ 170 (312)
T PRK05086 150 DVIRSETFVAELKGKQPGEVE 170 (312)
T ss_pred HHHHHHHHHHHHhCCChhheE
Confidence 555677777777787775554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.17 Score=51.82 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.++|++..+.+.+. ...++.+|.+|++.++++
T Consensus 7 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALV----------AAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 57888886 889999999998 7899999999999877665542 356789999999876542
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~g~id~lv~~a 88 (261)
T PRK08265 77 RFGRVDILVNLA 88 (261)
T ss_pred HhCCCCEEEECC
Confidence 123567666543
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.49 Score=51.42 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...++.|+| .|.+|..+++.|. +.|++|.+.|.++. .+.+ .-+.+||.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~----------~~G~~V~~~d~~~~-----------------~~~~----~~~~~aDl 145 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLT----------LSGYQVRILEQDDW-----------------DRAE----DILADAGM 145 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHH----------HCCCeEEEeCCCcc-----------------hhHH----HHHhcCCE
Confidence 446799998 9999999999998 78999999998642 1111 12457888
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
|+.+++.+...-.+...+. +.|+ .+++-+.+
T Consensus 146 VilavP~~~~~~~~~~l~~-l~~~-~iv~Dv~S 176 (374)
T PRK11199 146 VIVSVPIHLTEEVIARLPP-LPED-CILVDLTS 176 (374)
T ss_pred EEEeCcHHHHHHHHHHHhC-CCCC-cEEEECCC
Confidence 8888888754333322222 4444 56665555
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.17 Score=51.52 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=54.7
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a---- 473 (663)
++++|.| .|.+|+.+++.|. ++|++|+++++++++.+...+. ....+.+|.+|++-++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYA----------RQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 4788887 5889999999997 7899999999999887665442 466889999998876543
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
.....|.+|...
T Consensus 73 ~~~~g~id~lv~~a 86 (257)
T PRK07024 73 IAAHGLPDVVIANA 86 (257)
T ss_pred HHhCCCCCEEEECC
Confidence 123467776543
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.66 Score=48.57 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=34.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 451 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~ 451 (663)
++|.|+|.|.+|..+|+.|. ..|++|++.|.++++.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~----------~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA----------AAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHH
Confidence 46999999999999999997 789999999999988764
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.64 Score=47.86 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHH-------------------H----HHHHhc--
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSV-------------------V----KESRKL-- 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~-------------------~----~~~~~~-- 455 (663)
.+.||+|+|.|-+|..+++.|. ..| .+++++|.|.-. + +.+.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~La----------r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP 98 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALA----------RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP 98 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHH----------HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC
Confidence 3568999999999999999997 566 579999988211 1 222221
Q ss_pred CCCEE-EecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 456 GFPIL-YGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 456 ~~~vi-~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
...+. +-+..+++...+.-..++|.||.++++-.....+...+++.+ +++|.
T Consensus 99 ~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~ 151 (268)
T PRK15116 99 ECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVT 151 (268)
T ss_pred CcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 12221 112223333333333479999888888777777888888876 45553
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.23 Score=55.46 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=63.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-H----HHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-V----KESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~----~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.|+|.|..|...|+.|. +.|++|.+.|.++.. . +.+.+.|..+..|...+.+.++. ..+++|
T Consensus 2 ~v~viG~G~sG~s~a~~l~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~-~~~~~d 70 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK----------AQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP-WLDQPD 70 (459)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhH-HhhcCC
Confidence 5899999999999999997 899999999976542 2 23566788888887665543322 346788
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.||...+-+.+|- ....+|+.+ ++++.+
T Consensus 71 ~vv~s~gi~~~~~-~~~~a~~~~--i~v~~~ 98 (459)
T PRK02705 71 LVVVSPGIPWDHP-TLVELRERG--IEVIGE 98 (459)
T ss_pred EEEECCCCCCCCH-HHHHHHHcC--CcEEEh
Confidence 8877665554443 455566654 445443
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.19 Score=50.95 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=56.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLA----------QAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 467888886 999999999997 789999999999988765543 2456899999998877553
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.++-..+
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 79 HAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1235677766554
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.19 Score=51.33 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=56.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+. ...++.+|.+|++-.+++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALA----------AAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 46888885 889999999998 7899999999999887666542 467889999999866542
Q ss_pred -CCCCCcEEEEEcC
Q 006034 474 -GITSPKAVMIMYT 486 (663)
Q Consensus 474 -~i~~a~~vv~~~~ 486 (663)
.....|.++.+.+
T Consensus 76 ~~~~~id~lv~~ag 89 (263)
T PRK09072 76 REMGGINVLINNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 1346787776543
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.2 Score=51.61 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=56.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ .+..++.+|.+|++.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLL----------ARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46889985 899999999997 789999999999988777654 3567889999999877643
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.++-+.
T Consensus 73 ~~~~id~vi~~a 84 (276)
T PRK06482 73 ALGRIDVVVSNA 84 (276)
T ss_pred HcCCCCEEEECC
Confidence 234668776654
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.19 Score=53.74 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=52.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-hcCCCEEEecCC-CHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDAS-RPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-~~~~~vi~GD~~-~~~~L~~a~i~~a~~v 481 (663)
+|+|.|. |-+|+.+++.|.+ ..+++|+.+|+++++...+. ..+.+++.||.+ +.+.+.++ ++++|.|
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~---------~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~V 72 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILE---------TTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVI 72 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHh---------CCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEE
Confidence 5999997 9999999999971 34799999998876655443 246889999998 66666553 4578877
Q ss_pred E
Q 006034 482 M 482 (663)
Q Consensus 482 v 482 (663)
+
T Consensus 73 i 73 (347)
T PRK11908 73 L 73 (347)
T ss_pred E
Confidence 7
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.13 Score=54.86 Aligned_cols=83 Identities=22% Similarity=0.309 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|.+.|++++... ..+.+.. ..+ ++++ ++++|.|
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~----------~~G~~V~~~d~~~~~~~-~~~~~~~-----~~~---l~el-l~~aDiV 208 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAK----------GFGMRILYYSRTRKPEA-EKELGAE-----YRP---LEEL-LRESDFV 208 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCChhh-HHHcCCE-----ecC---HHHH-HhhCCEE
Confidence 4568999999999999999997 78999999998765432 2222221 112 2221 4578999
Q ss_pred EEEcCCHHHH--HHHHHHHHHhCCC
Q 006034 482 MIMYTDKKRT--IEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n--~~~~~~~r~~~~~ 504 (663)
++..+..+++ +.-......+.|+
T Consensus 209 ~l~lP~t~~T~~~i~~~~~~~mk~g 233 (333)
T PRK13243 209 SLHVPLTKETYHMINEERLKLMKPT 233 (333)
T ss_pred EEeCCCChHHhhccCHHHHhcCCCC
Confidence 9998876533 3333445555555
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.2 Score=53.05 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH---h-----cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K-----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~---~-----~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|.|. |-+|+.+++.|. ++|++|+++.+|++..+... . ....++.||.+|++.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 74 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLL----------FRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA 74 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH
Confidence 457899986 899999999997 78999988887776433221 1 2356789999999988764
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
+++.|.++-+.
T Consensus 75 -~~~~d~vih~A 85 (325)
T PLN02989 75 -IDGCETVFHTA 85 (325)
T ss_pred -HcCCCEEEEeC
Confidence 45678776655
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.21 Score=50.97 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=55.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhc--C--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSA--G-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a--~-- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ ....++.+|.+|++.++++ +
T Consensus 2 k~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFA----------AEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46888886 789999999997 789999999999998777654 2467889999998877653 1
Q ss_pred ---CCCCcEEEEEc
Q 006034 475 ---ITSPKAVMIMY 485 (663)
Q Consensus 475 ---i~~a~~vv~~~ 485 (663)
-.+.|.+|.+.
T Consensus 72 ~~~~~~id~vi~~a 85 (260)
T PRK08267 72 AATGGRLDVLFNNA 85 (260)
T ss_pred HHcCCCCCEEEECC
Confidence 23568776544
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.43 Score=50.56 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=64.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCE--EEecCCCHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPI--LYGDASRPAVL 470 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~v--i~GD~~~~~~L 470 (663)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++..+.+.+ .+... ..+..+-...+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a----------~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL----------AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCH
Confidence 57999999999999999997 789999999999987654332 21110 00000111123
Q ss_pred HhcCCCCCcEEEEEcCCHHH--HHHHHHHHHHhCCCCcEEEEecChhhHHHHH
Q 006034 471 LSAGITSPKAVMIMYTDKKR--TIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 521 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~--n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~ 521 (663)
+ ..+++||.|+-+..++.+ ........+...|+ .|++...+.-....+.
T Consensus 78 ~-~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~-aIlaSnTS~l~~s~la 128 (321)
T PRK07066 78 E-ACVADADFIQESAPEREALKLELHERISRAAKPD-AIIASSTSGLLPTDFY 128 (321)
T ss_pred H-HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCC-eEEEECCCccCHHHHH
Confidence 2 246899999888887532 22223444444555 3666555544444443
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.48 Score=49.78 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=56.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE-EEecCCCHHHHH-----hcCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-LYGDASRPAVLL-----SAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v-i~GD~~~~~~L~-----~a~i~~ 477 (663)
.+|.|+|.|.+|..+|+.|. ++|++|.+--+|++.++++.+...+. +.++..-|+.++ +.-+++
T Consensus 2 ~kI~ViGaGswGTALA~~la----------~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA----------RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH----------hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc
Confidence 36899999999999999997 78899999999999999988754333 334554444321 123456
Q ss_pred CcEEEEEcCCH
Q 006034 478 PKAVMIMYTDK 488 (663)
Q Consensus 478 a~~vv~~~~dd 488 (663)
+|.++.+++..
T Consensus 72 ad~iv~avPs~ 82 (329)
T COG0240 72 ADIIVIAVPSQ 82 (329)
T ss_pred CCEEEEECChH
Confidence 99999999875
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.22 Score=51.40 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=55.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+. ....+.+|.+|++.+.++
T Consensus 5 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAAL----------AAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred CEEEEecCCChHHHHHHHHHH----------hCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 46888886 889999999997 7899999999999987766552 466789999999877543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 75 ~~~~~d~vv~~a 86 (277)
T PRK06180 75 TFGPIDVLVNNA 86 (277)
T ss_pred HhCCCCEEEECC
Confidence 123467666554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.2 Score=50.42 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|+++++++++++..+...+ . ...++.+|.+|++.++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALA----------EAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 367888886 899999999997 789999999999887655432 1 356789999999876542
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.++-+.+
T Consensus 77 ~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 77 AAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1246787776654
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.56 Score=49.69 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=58.5
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
+.-+++.|.|.|-.|....|... ..|.+|+++|+++++.+.+++.|...+.-.. |++..++..- .+|.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Ak----------a~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~-~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAK----------AMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE-IADA 232 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH----------HcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh-hCcE
Confidence 35678999999999988888876 6889999999999999999998766655333 6666655432 3998
Q ss_pred EEEEcC
Q 006034 481 VMIMYT 486 (663)
Q Consensus 481 vv~~~~ 486 (663)
++.+.+
T Consensus 233 ii~tv~ 238 (339)
T COG1064 233 IIDTVG 238 (339)
T ss_pred EEECCC
Confidence 888888
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.23 Score=50.61 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhc----
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a---- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++|++..+.+.+. ...++.+|.+|++.++++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFA----------EAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence 467888876 999999999997 7899999999998877665442 236789999999977542
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 81 ~~~~~~~d~vi~~a 94 (264)
T PRK12829 81 VERFGGLDVLVNNA 94 (264)
T ss_pred HHHhCCCCEEEECC
Confidence 124678777544
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.24 Score=50.28 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=55.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcC----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAG---- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~---- 474 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ ....++.+|.+|++.++++=
T Consensus 3 k~ilItGat~~iG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFL----------AAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 35788886 899999999997 789999999999988765543 34667899999999775421
Q ss_pred --CCCCcEEEEEcC
Q 006034 475 --ITSPKAVMIMYT 486 (663)
Q Consensus 475 --i~~a~~vv~~~~ 486 (663)
..+.|.++....
T Consensus 73 ~~~~~~d~vi~~ag 86 (257)
T PRK07074 73 AERGPVDVLVANAG 86 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 135687776664
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.8 Score=45.85 Aligned_cols=143 Identities=14% Similarity=0.113 Sum_probs=86.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH--HHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~--~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++|.|+|. |++|..++..|.. +....+++++|.+.... ..+.+........+.+|+..+ ...++++|
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~--------~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~-~~~l~gaD 78 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQ--------NPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELW-EKALRGAD 78 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhc--------CCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCch-HHHhCCCC
Confidence 358999999 9999999998862 13456899999954322 223322223344455553332 23467899
Q ss_pred EEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHHHH-------HH--cCCCeEEcCchHH
Q 006034 480 AVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLLDL-------KK--AGATDAILENAET 535 (663)
Q Consensus 480 ~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~~l-------~~--~Gad~vi~p~~~~ 535 (663)
+||++.+.. +.|.. ++..+++.+|+ .++..+.++-+.-.. +. .-.++|+--..+-
T Consensus 79 vVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LD 157 (321)
T PTZ00325 79 LVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLD 157 (321)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHH
Confidence 888877641 23433 44567778888 666667766544322 11 2345566555566
Q ss_pred HHHHHHHHHHhcCCCHHHHH
Q 006034 536 SLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 536 ~~~la~~~~~~~~~~~~~~~ 555 (663)
+.++-..+-+.+++.|..++
T Consensus 158 s~R~r~~la~~l~v~~~~V~ 177 (321)
T PTZ00325 158 VVRARKFVAEALGMNPYDVN 177 (321)
T ss_pred HHHHHHHHHHHhCcChhheE
Confidence 66777777777777775543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.75 Score=58.12 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++|-++|.|++|..+++.|. ..|+++.+.|+++++++.+.+.+... ..+++.+ ++++|.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s~~e~----~~~aDvV 384 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLL----------KSNFSVCGYDVYKPTLVRFENAGGLA----GNSPAEV----AKDVDVL 384 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEE
Confidence 4467999999999999999997 78999999999999999888766433 2333322 3578999
Q ss_pred EEEcCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hhhH----HHHHH--cCCCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MMHL----LDLKK--AGATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~----~~r~~~~~~~iia~~~~--~~~~----~~l~~--~Gad~vi~p 531 (663)
+++..|++.--.+.. .+..+.++ .++.-..+ ++.. +.+++ .|+..+=.|
T Consensus 385 i~~V~~~~~v~~Vl~g~~g~~~~l~~g-~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 385 VIMVANEVQAENVLFGDLGAVSALPAG-ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred EEecCChHHHHHHHhchhhHHhcCCCC-CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 999998754322221 22333444 55554443 4433 34455 677766656
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.17 Score=53.39 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=53.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH---HHHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~---~~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++|++... .+.. .+..++.||.+|++.++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 73 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLL----------QRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV- 73 (322)
T ss_pred CEEEEECChHHHHHHHHHHHH----------HCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-
Confidence 57999995 999999999998 78999999988765422 2211 2457899999999887664
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++++|.|+-+.
T Consensus 74 ~~~~d~Vih~A 84 (322)
T PLN02662 74 VDGCEGVFHTA 84 (322)
T ss_pred HcCCCEEEEeC
Confidence 34678776654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.49 Score=53.21 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-------------H
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-------------A 468 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-------------~ 468 (663)
...+|+|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+.-|..++ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak----------~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAG----------SLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchh
Confidence 4678999999999999999997 7888999999999999999998877543333221 1
Q ss_pred HHH------hcCCCCCcEEEEEcCCHH---HHHHHHHHHHHhCCCCcEEEEe
Q 006034 469 VLL------SAGITSPKAVMIMYTDKK---RTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 469 ~L~------~a~i~~a~~vv~~~~dd~---~n~~~~~~~r~~~~~~~iia~~ 511 (663)
..+ .-.++.+|.+|-+...+. ..+..-...+.+.|.-.|+-..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 111 113467998888887532 1122345566666664444333
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.29 Score=53.12 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=55.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++-|+|+|++|+.+++.|. ..|.+|.+.|+++...+...+.+... -+ +=++++ .++|.|
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~----------afG~~V~~~d~~~~~~~~~~~~g~~~--~~-~l~ell-----~~sDvV 259 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLK----------PFNCNLLYHDRLKMDPELEKETGAKF--EE-DLDAML-----PKCDVV 259 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHH----------HCCCEEEEECCCCcchhhHhhcCcee--cC-CHHHHH-----hhCCEE
Confidence 3468999999999999999997 78999999998754333333333221 11 112233 568989
Q ss_pred EEEcCCHHHHH--HHHHHHHHhCCCC
Q 006034 482 MIMYTDKKRTI--EAVQRLRLAFPAI 505 (663)
Q Consensus 482 v~~~~dd~~n~--~~~~~~r~~~~~~ 505 (663)
++..+..+++. .-......+.|+.
T Consensus 260 ~l~lPlt~~T~~li~~~~l~~mk~ga 285 (386)
T PLN03139 260 VINTPLTEKTRGMFNKERIAKMKKGV 285 (386)
T ss_pred EEeCCCCHHHHHHhCHHHHhhCCCCe
Confidence 88888755443 3334555555553
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.41 Score=54.05 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=50.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc------CCCEE-------EecCCCHHHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------GFPIL-------YGDASRPAVLL 471 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~------~~~vi-------~GD~~~~~~L~ 471 (663)
+|-|+|.|.+|..+|..|. ..|++|++.|.+++..+.+.+. ...-+ .|..+-.+.++
T Consensus 6 kIavIG~G~MG~~iA~~la----------~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ 75 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFL----------LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLA 75 (495)
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHH
Confidence 6999999999999999997 7899999999999987664320 00000 01111011232
Q ss_pred hcCCCCCcEEEEEcCCHH
Q 006034 472 SAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~dd~ 489 (663)
+ -+++||.|+.+..++.
T Consensus 76 e-a~~~aD~Vieavpe~~ 92 (495)
T PRK07531 76 E-AVAGADWIQESVPERL 92 (495)
T ss_pred H-HhcCCCEEEEcCcCCH
Confidence 2 2578999998888864
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.41 Score=52.80 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=73.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-e----------CChHHHHHHHhcC---CCEEE---e-c-
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-D----------LNPSVVKESRKLG---FPILY---G-D- 463 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d----------~d~~~~~~~~~~~---~~vi~---G-D- 463 (663)
..+++|.|+|++|+.+|+.|. +.|.+|+.+ | .|.+.+....+.. ..-+. | +
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~----------~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~ 301 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQ----------QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY 301 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee
Confidence 468999999999999999997 789999988 8 7877665544321 11110 0 1
Q ss_pred CCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHcCCCeEEcCc
Q 006034 464 ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 464 ~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~Gad~vi~p~ 532 (663)
.++++.+. .++|.++=+...+..|-.-+...+. .++++|+..- +++..+.|++-|+- +.|.
T Consensus 302 i~~~~i~~----~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~rGI~--~vPD 366 (445)
T PRK09414 302 LEGGSPWS----VPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLEAGVL--FAPG 366 (445)
T ss_pred cCCccccc----cCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHHCCcE--EECc
Confidence 12333332 3789887777665555554444443 2467777544 35778888888874 4476
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.29 Score=49.75 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=55.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc------CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a------~i 475 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ .+..++..|.+|++-++++ ..
T Consensus 8 ~~vlItGasggIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLA----------AEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57899988 999999999997 789999999999887766544 3346889999998866532 12
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.++-..
T Consensus 78 ~~id~vi~~a 87 (255)
T PRK06057 78 GSVDIAFNNA 87 (255)
T ss_pred CCCCEEEECC
Confidence 3567776654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.21 Score=50.77 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++.+++++..+...+ .+ ...+.+|.+|++-++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLA----------QAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHH
Confidence 357888886 899999999997 789999999999887654432 22 56788999998877653
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
.....|.+|-...
T Consensus 80 ~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 80 AFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1235677766553
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.19 Score=56.29 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++++|+|.|..|...|..|. ..|++|+++|.++. ..+.+.+.|..+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~----------~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 209 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILA----------RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFH 209 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4578999999999999999998 78999999998752 3455666777665
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~dd 488 (663)
.+..-+.+ .+++. ..++|.++++++..
T Consensus 210 ~~~~v~~~~~~~~~-~~~~D~vilAtGa~ 237 (467)
T TIGR01318 210 LNCEVGRDISLDDL-LEDYDAVFLGVGTY 237 (467)
T ss_pred CCCEeCCccCHHHH-HhcCCEEEEEeCCC
Confidence 54321111 11221 13689999999864
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.73 E-value=1 Score=48.33 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=83.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHhc----CCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKL----GFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~~----~~~vi~GD~~~~~~L~~a~i 475 (663)
.+|.|+|.|++|..++-.|.. .....+++++|.+++.++- +.+. +..-+.++ .|.+ .+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~--------~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~-~dy~-----~~ 103 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT--------QDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS-TDYA-----VT 103 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh--------CCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC-CCHH-----Hh
Confidence 589999999999999998861 1233479999999876432 2221 11233332 2222 36
Q ss_pred CCCcEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHH---HHHHcC--CCeEEcC-chH
Q 006034 476 TSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAG--ATDAILE-NAE 534 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~G--ad~vi~p-~~~ 534 (663)
++||.||++.+. | ..|. .++...++.+|+. ++..+.||.+.- ..+..| -.+|+-- ..+
T Consensus 104 ~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~-ivivvtNPvdv~t~~~~k~sg~p~~rviG~gt~L 182 (350)
T PLN02602 104 AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDT-ILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNL 182 (350)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCchHHHHHHHHHHhCCCHHHEEeecchH
Confidence 899988887442 2 3454 3556667778884 455555665432 234455 3456544 344
Q ss_pred HHHHHHHHHHHhcCCCHHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~~ 556 (663)
-..++-+.+-+.+++++..++.
T Consensus 183 Ds~R~r~~lA~~l~v~~~~V~~ 204 (350)
T PLN02602 183 DSSRFRFLIADHLDVNAQDVQA 204 (350)
T ss_pred HHHHHHHHHHHHhCCCccceee
Confidence 4556666666777777765543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.24 Score=50.16 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=54.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------~ 474 (663)
+++|.|. |.+|..+++.|. ++|++|+++++++++.+.+.+ .....+.+|.+|++.++++ .
T Consensus 2 ~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFI----------QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4778885 889999999997 789999999999988776654 2466789999999877542 2
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.++...
T Consensus 72 ~~~id~vi~~a 82 (248)
T PRK10538 72 WRNIDVLVNNA 82 (248)
T ss_pred cCCCCEEEECC
Confidence 24678777543
|
|
| >PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters | Back alignment and domain information |
|---|
Probab=92.70 E-value=3 Score=39.83 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=51.0
Q ss_pred cccCchhHHHHHHHHHHhccCC----CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQLG----IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLS 75 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~g----lv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~ 75 (663)
+++++-...|-+++|+++|.++ ...+....+.+.++|+.++++..|++--++.+...++..+.....+++++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~ 94 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIIT 94 (169)
T ss_pred cceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666779999999999753 22355677899999999999999999988766554444344433333333
|
Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.19 Score=54.38 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHHH
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAV 469 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~~ 469 (663)
..++|+|.|. |-+|+.+++.|. ++|++|+++.++++..+.+.+ .+..++.||.+|++.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~----------~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLL----------RHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHH
Confidence 3457889987 899999999997 789999988777765544432 135678999999998
Q ss_pred HHhcCCCCCcEEE
Q 006034 470 LLSAGITSPKAVM 482 (663)
Q Consensus 470 L~~a~i~~a~~vv 482 (663)
++++ ++++|.++
T Consensus 122 l~~~-i~~~d~V~ 133 (367)
T PLN02686 122 LHEA-FDGCAGVF 133 (367)
T ss_pred HHHH-HHhccEEE
Confidence 7654 34456544
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.88 Score=46.63 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=46.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC---CEEEEeCChHHHHHHHhcC--CCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW---PFVAFDLNPSVVKESRKLG--FPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~---~vvvid~d~~~~~~~~~~~--~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+|-|+|+|++|+.+++.|. +.++ .+.+.++++++.+.+.+.. ..+. . +..+.. +++|
T Consensus 2 ~IgiIG~G~mG~aia~~L~----------~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~-~--~~~~~~-----~~aD 63 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL----------TSPADVSEIIVSPRNAQIAARLAERFPKVRIA-K--DNQAVV-----DRSD 63 (258)
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCChheEEEECCCHHHHHHHHHHcCCceEe-C--CHHHHH-----HhCC
Confidence 4889999999999999997 4443 3578899999988877642 2221 1 122233 3689
Q ss_pred EEEEEcCCH
Q 006034 480 AVMIMYTDK 488 (663)
Q Consensus 480 ~vv~~~~dd 488 (663)
.|++++.++
T Consensus 64 vVilav~p~ 72 (258)
T PRK06476 64 VVFLAVRPQ 72 (258)
T ss_pred EEEEEeCHH
Confidence 999998854
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.24 Score=49.95 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+.+ ....++.+|.+|++-++++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFA----------AEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46888886 889999999997 789999999999987665543 2356889999999988653
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
...+.|.+|-...
T Consensus 76 ~~~~~~~d~vi~~ag 90 (251)
T PRK07231 76 LERFGSVDILVNNAG 90 (251)
T ss_pred HHHhCCCCEEEECCC
Confidence 2245787776553
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.23 Score=50.49 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=55.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++|+++.+...+. ....+.+|.+|++.++++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYL----------AEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46888885 899999999997 7899999999999987665542 356788999999877543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~id~li~~a 88 (257)
T PRK07067 77 RFGGIDILFNNA 88 (257)
T ss_pred HcCCCCEEEECC
Confidence 123567776543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.31 Score=48.63 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHhcCCCEEEecCCCHHHHHhc-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~~~~~vi~GD~~~~~~L~~a----- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++|+++.+. +.+.+..++.+|.+|++-++++
T Consensus 8 k~vlItGatg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLA----------ARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHH----------HCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHH
Confidence 46788875 999999999997 679999999998876433 3345677889999998876542
Q ss_pred -CCCCCcEEEEEc
Q 006034 474 -GITSPKAVMIMY 485 (663)
Q Consensus 474 -~i~~a~~vv~~~ 485 (663)
.....|.++-..
T Consensus 78 ~~~~~~d~vi~~a 90 (239)
T PRK12828 78 RQFGRLDALVNIA 90 (239)
T ss_pred HHhCCcCEEEECC
Confidence 123567766554
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.42 Score=50.01 Aligned_cols=119 Identities=9% Similarity=0.045 Sum_probs=71.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCCh---HHHHHHHh----cC--CCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP---SVVKESRK----LG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~---~~~~~~~~----~~--~~vi~GD~~~~~~L~~ 472 (663)
.++++|+|.|-.|+.++..|. +.|.+ +.++++++ ++.+.+.+ .+ ..+...|.+|.+-+++
T Consensus 126 ~k~vlI~GAGGagrAia~~La----------~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCA----------LDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 457999999999999999997 67876 99999997 56555443 11 2345567777666543
Q ss_pred cCCCCCcEEEEEcCCHH---HHHHHHHHHHHhCCCCcEEEEecChhhHHHH---HHcCCCeEEcCch
Q 006034 473 AGITSPKAVMIMYTDKK---RTIEAVQRLRLAFPAIPIYARAQDMMHLLDL---KKAGATDAILENA 533 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd~---~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l---~~~Gad~vi~p~~ 533 (663)
.++++|.+|-+|+-.. .+-.-......+.++..++=.+.++...+.+ ++.|+ .+++-..
T Consensus 196 -~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~-~~~~G~~ 260 (289)
T PRK12548 196 -EIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGC-KTVGGLG 260 (289)
T ss_pred -hhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCC-eeeCcHH
Confidence 4667898888885210 0000000012233443344455565544444 55576 4556554
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.22 Score=51.62 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=53.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a~-- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|+++|++++..+...+ .+ ..++.+|.+|++.++++-
T Consensus 7 k~vlVtGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGA----------ALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 56888886 789999999997 789999999999876554432 23 455899999998776531
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.++-..
T Consensus 77 ~~~~~g~id~vi~~A 91 (287)
T PRK06194 77 ALERFGAVHLLFNNA 91 (287)
T ss_pred HHHHcCCCCEEEECC
Confidence 12457666554
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.24 Score=49.29 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=54.2
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc----CCCC
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA----GITS 477 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a----~i~~ 477 (663)
++++|.| .|.+|+.+++.|. +.|++|++++++++..+.+.+ .+..+..+|.+|++.++++ .=.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLL----------ERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQR 71 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------hCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCC
Confidence 3578887 5899999999998 789999999999887665544 3567788999998755442 1135
Q ss_pred CcEEEEEc
Q 006034 478 PKAVMIMY 485 (663)
Q Consensus 478 a~~vv~~~ 485 (663)
.|.++...
T Consensus 72 id~vi~~a 79 (225)
T PRK08177 72 FDLLFVNA 79 (225)
T ss_pred CCEEEEcC
Confidence 78776554
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.49 Score=56.27 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=51.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+++.|+|+|++|..+++.|. +.| .+|.++|+++++.+.+.+.+... . ..++. ++ .++++|.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~----------~~G~~~~V~~~d~~~~~~~~a~~~g~~~-~-~~~~~---~~-~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALR----------ERGLAREVVAVDRRAKSLELAVSLGVID-R-GEEDL---AE-AVSGADVI 67 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHH----------hcCCCCEEEEEECChhHHHHHHHCCCCC-c-ccCCH---HH-HhcCCCEE
Confidence 57999999999999999997 556 57999999999988877766421 0 11121 11 24688999
Q ss_pred EEEcCCHH
Q 006034 482 MIMYTDKK 489 (663)
Q Consensus 482 v~~~~dd~ 489 (663)
+.+++.+.
T Consensus 68 ilavp~~~ 75 (735)
T PRK14806 68 VLAVPVLA 75 (735)
T ss_pred EECCCHHH
Confidence 99998753
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.15 Score=55.42 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=68.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+++.|+|.|+.|+.+++... +.|++|+++|.+++. +... ....+.+|..|++.+.+.- +++|.+
T Consensus 3 ~~igilG~Gql~~ml~~aa~----------~lG~~v~~~d~~~~~pa~~~---ad~~~~~~~~D~~~l~~~a-~~~dvi- 67 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAA----------PLGYKVIVLDPDPDSPAAQV---ADEVIVADYDDVAALRELA-EQCDVI- 67 (372)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCchhHh---CceEEecCCCCHHHHHHHH-hcCCEE-
Confidence 36899999999999999997 789999999998765 2222 2456778999999887763 578854
Q ss_pred EEcCCHHHHHHHHHHHHH---hCCCCcEEEEecCh-hhHHHHHHcCCCe
Q 006034 483 IMYTDKKRTIEAVQRLRL---AFPAIPIYARAQDM-MHLLDLKKAGATD 527 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~---~~~~~~iia~~~~~-~~~~~l~~~Gad~ 527 (663)
+.+.+..+......+.+ ..|+...+..+.|. ...+.++++|+..
T Consensus 68 -t~e~e~i~~~~l~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~ 115 (372)
T PRK06019 68 -TYEFENVPAEALDALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIPV 115 (372)
T ss_pred -EeCcCCCCHHHHHHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 33322222222222212 23343344444444 3455667777763
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.26 Score=49.85 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=46.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHh---cCCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK---LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~---~~~~vi~GD~~~~~~L~~ 472 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++ +..+.+.+ .+..++.+|.+|++.+++
T Consensus 2 k~vlItGasggiG~~ia~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLL----------EKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred cEEEEecCCchHHHHHHHHHH----------hcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 36888885 999999999997 7899999999987 45554443 246688999999987754
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.27 Score=50.88 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=52.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcC--CCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~--~~vi~GD~~~~~~L~~a--- 473 (663)
++.++|.|.|.+|+.+++.|. .|++|++++++++..+... +.+ ..++.+|.+|++.++++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-----------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~ 70 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-----------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAAT 70 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 457899999999999999994 5899999999987655443 223 45688999998876543
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 71 ~~~~g~id~li~nA 84 (275)
T PRK06940 71 AQTLGPVTGLVHTA 84 (275)
T ss_pred HHhcCCCCEEEECC
Confidence 123567776544
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.25 Score=49.83 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |-+|+.+++.|. +.|++|++++++++..+...+ . ....+..|.+|++.++++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALA----------REGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 56899987 999999999997 789999999999876544432 2 345688999999866431
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
.....|.+|-..+
T Consensus 77 ~~~~~~~id~vi~~ag 92 (250)
T PRK07774 77 TVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1235788876554
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.26 Score=49.87 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=55.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ .....+.+|.+|++.++++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALA----------KEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 57888885 999999999997 789999999999887655432 2356789999999977553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.+|.+.
T Consensus 75 ~~~~~~~~d~vi~~a 89 (258)
T PRK12429 75 AVETFGGVDILVNNA 89 (258)
T ss_pred HHHHcCCCCEEEECC
Confidence 123578777655
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.49 Score=50.25 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=46.9
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh-cCCCEEEecCC--------------CHHH
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK-LGFPILYGDAS--------------RPAV 469 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~-~~~~vi~GD~~--------------~~~~ 469 (663)
|.|.|||++|+.+++.+.+ ..+.+++.| |.+++....+.. .++..+++... +.+-
T Consensus 1 VaInG~GrIGr~varav~~---------~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~ee 71 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTK---------QDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLED 71 (333)
T ss_pred CEEECCcHHHHHHHHHHhh---------CCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHH
Confidence 4689999999999999862 456676654 777776555543 56666653322 1222
Q ss_pred HHhcCCCCCcEEEEEcCCH
Q 006034 470 LLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd 488 (663)
+ .+++|.|+.+|+..
T Consensus 72 L----l~~vDiVve~Tp~~ 86 (333)
T TIGR01546 72 L----LEKVDIVVDATPGG 86 (333)
T ss_pred H----hhcCCEEEECCCCC
Confidence 2 15799999888764
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase | Back alignment and domain information |
|---|
Probab=92.44 E-value=4.5 Score=45.11 Aligned_cols=96 Identities=23% Similarity=0.301 Sum_probs=55.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+++++|+|.|+-|+.+++.|++ ..+.+++++ .+|.|++..... .+.+++ |+..| .-+...-.++|.
T Consensus 127 ~~~rvLIiGag~~~~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~~~--~gvpVl-g~~~d--l~~~i~~~~vd~ 194 (451)
T TIGR03023 127 NLRRVLIVGAGELGRRLAERLAR-------NPELGYRVVGFFDDRPDARTGV--RGVPVL-GKLDD--LEELIREGEVDE 194 (451)
T ss_pred CCCcEEEEeCCHHHHHHHHHHHh-------CccCCcEEEEEEeCCCcccccc--CCCCcc-CCHHH--HHHHHHhcCCCE
Confidence 35689999999999999999962 012345554 457666543221 345543 44333 222223356788
Q ss_pred EEEEcCCHH-H-HHHHHHHHHHhCCCCcEEE
Q 006034 481 VMIMYTDKK-R-TIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 481 vv~~~~dd~-~-n~~~~~~~r~~~~~~~iia 509 (663)
|+++.++.+ . -..+...+++.+.+++++-
T Consensus 195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP 225 (451)
T TIGR03023 195 VYIALPLAAEDRILELLDALEDLTVDVRLVP 225 (451)
T ss_pred EEEeeCcccHHHHHHHHHHHHhcCCEEEEeC
Confidence 888877642 2 2345556666665544443
|
Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. |
| >TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.84 Score=52.31 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=51.5
Q ss_pred cccCchhHHHHHHHHHHhccCCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+.+++-.+.|-+++|+++|.+|.- .-+.+.++|+++++|.+|++.-++.++..+|+.+...+..++...
T Consensus 31 ~~~~LG~~~gvLfvgl~~G~~g~~----i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~ 99 (562)
T TIGR03802 31 GSFQLGGVAGSLIVAVLIGQLGIQ----IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAV 99 (562)
T ss_pred eeeecchHHHHHHHHHHHHhcCCC----CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHH
Confidence 345666678899999999988752 222477899999999999999999888777765555555444443
|
All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625). |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.46 Score=42.61 Aligned_cols=91 Identities=21% Similarity=0.140 Sum_probs=53.9
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHhcC--C-CEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRKLG--F-PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~~~--~-~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.|+| .|..|+.+++.|.+ .++.++..+ ++++++.+.+++.+ . ++...+.+ .+.++ ..++|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~---------~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~D 67 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAE---------HPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE---ELAVD 67 (122)
T ss_pred CEEEECCCChHHHHHHHHHhc---------CCCceEEEEEechhhcCcCHHHHCcccccccccccc-cCChh---hcCCC
Confidence 478999 59999999999972 467888877 65554444444322 1 12222332 23333 25889
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.++++++++...-.+....+...++ +++.
T Consensus 68 vV~~~~~~~~~~~~~~~~~~~~~~g-~~vi 96 (122)
T smart00859 68 IVFLALPHGVSKEIAPLLPKAAEAG-VKVI 96 (122)
T ss_pred EEEEcCCcHHHHHHHHHHHhhhcCC-CEEE
Confidence 9999999875433332233444555 4444
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.22 Score=55.08 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++|+|.|.+|+.+++.|. ..|. ++++.++++++.+.+.+ .+..++ +.+.+.+ .+.++|
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~----------~~G~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~-~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLA----------EKGVRKITVANRTLERAEELAEEFGGEAI-----PLDELPE-ALAEAD 244 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHH----------HCCCCeEEEEeCCHHHHHHHHHHcCCcEe-----eHHHHHH-HhccCC
Confidence 3468999999999999999997 6676 79999999999876655 332222 2223332 356899
Q ss_pred EEEEEcCCHHH
Q 006034 480 AVMIMYTDKKR 490 (663)
Q Consensus 480 ~vv~~~~dd~~ 490 (663)
.||.+|+.+..
T Consensus 245 vVI~aT~s~~~ 255 (423)
T PRK00045 245 IVISSTGAPHP 255 (423)
T ss_pred EEEECCCCCCc
Confidence 99999987543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.72 Score=48.95 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHH--H--Hh----cCCC-EEEecCCCHHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKE--S--RK----LGFP-ILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~--~--~~----~~~~-vi~GD~~~~~~L~ 471 (663)
.+.+|.|+|.|.+|..++..+. ..+ .+++++|.|+++.+. + .. .+.. -+.+ .+|.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~----------~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~--- 69 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLIL----------QKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE--- 69 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHH----------HCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH---
Confidence 3558999999999999999886 445 579999999876432 1 11 1111 2222 13333
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHH-cC--CCeEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AG--ATDAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~-~G--ad~vi~p 531 (663)
.+.+||.||++.+. | ..|. .++...++.+|+. ++..+.||.+. ..+.+ .| ..+++--
T Consensus 70 --~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a-~vivvsNP~di~t~~~~~~s~~p~~rviG~ 146 (319)
T PTZ00117 70 --DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNA-FVICVTNPLDCMVKVFQEKSGIPSNKICGM 146 (319)
T ss_pred --HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecChHHHHHHHHHHhhCCCcccEEEe
Confidence 34788988887722 1 1122 3555666677874 44455665433 23333 34 3456633
Q ss_pred c-hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 N-AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 ~-~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
. ..-..++-+.+.+.+++++..++
T Consensus 147 gt~lds~R~~~~la~~l~v~~~~v~ 171 (319)
T PTZ00117 147 AGVLDSSRFRCNLAEKLGVSPGDVS 171 (319)
T ss_pred cchHHHHHHHHHHHHHhCCCcccce
Confidence 3 33344566666677788776544
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.29 Score=49.55 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~----------~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAIL----------EAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 357888886 799999999998 789999999999887655432 1234568999999877553
Q ss_pred --C----CCCCcEEEEEc
Q 006034 474 --G----ITSPKAVMIMY 485 (663)
Q Consensus 474 --~----i~~a~~vv~~~ 485 (663)
. ....|.+|-..
T Consensus 74 ~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 74 LSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 1 12367776543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.9 Score=57.42 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++|-++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.|..+. .++.-+ .+++|.|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~----------~~G~~v~v~dr~~~~~~~l~~~Ga~~~----~s~~e~----a~~advV 64 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLL----------RSGFKVQAFEISTPLMEKFCELGGHRC----DSPAEA----AKDAAAL 64 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCeec----CCHHHH----HhcCCEE
Confidence 3567999999999999999997 789999999999999999998775432 233322 2578999
Q ss_pred EEEcCCHHHHHHHHH----HHHHhCCCCcEEEEec--Chhh----HHHHHHcC--CCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DMMH----LLDLKKAG--ATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~----~~r~~~~~~~iia~~~--~~~~----~~~l~~~G--ad~vi~p 531 (663)
+++..|++.-..+.. .+..+.|+ +++.-.. +++. .+.+++.| ++.+=.|
T Consensus 65 i~~l~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP 125 (1378)
T PLN02858 65 VVVLSHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY 125 (1378)
T ss_pred EEEcCChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999988764333321 23334444 4555433 4433 34456778 5554444
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.57 Score=49.94 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=53.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.++.|+|+|++|+.+|+.|. ..|.+|++.|++++...... .. ..+ +++ -++++|.++.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~----------~~G~~V~~~d~~~~~~~~~~-------~~-~~~---l~e-ll~~aDiVil 204 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYA----------GFGATITAYDAYPNKDLDFL-------TY-KDS---VKE-AIKDADIISL 204 (330)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCChhHhhhhh-------hc-cCC---HHH-HHhcCCEEEE
Confidence 46999999999999999997 78999999999886532110 00 112 222 2468899999
Q ss_pred EcCCHHH--HHHHHHHHHHhCCCC
Q 006034 484 MYTDKKR--TIEAVQRLRLAFPAI 505 (663)
Q Consensus 484 ~~~dd~~--n~~~~~~~r~~~~~~ 505 (663)
+.+.... ++........+.++.
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~ga 228 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGA 228 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCc
Confidence 9887654 333334444455553
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.43 Score=49.94 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=51.8
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--H-HHHHh-----cCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--V-KESRK-----LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~-~~~~~-----~~~~vi~GD~~~~~~L~~ 472 (663)
..++++|.|. |.+|+.+++.|. ++|++|+++.++++. . +.+.+ .+..++.+|.+|++.+.+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll----------~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~ 74 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLL----------SRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILD 74 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHH
Confidence 3457899986 899999999998 789999999875332 1 11221 246788999999998876
Q ss_pred cCCCCCcEEEE
Q 006034 473 AGITSPKAVMI 483 (663)
Q Consensus 473 a~i~~a~~vv~ 483 (663)
+ +.+++.++-
T Consensus 75 ~-l~~~d~v~~ 84 (297)
T PLN02583 75 A-LKGCSGLFC 84 (297)
T ss_pred H-HcCCCEEEE
Confidence 4 446777763
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.2 Score=47.06 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHhc----CCCEEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKL----GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~~----~~~vi~GD~~~~~~L~~a 473 (663)
.+.+|.|+|.|++|..++..|.. .....+++++|.+++.++- +.+. ...-+++. +|.+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~--------~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~-~dy~----- 67 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILA--------KGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD-KDYS----- 67 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC-CCHH-----
Confidence 35589999999999999998852 1344579999998876432 2221 11233321 2332
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHcCCC--eEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Gad--~vi~p-~ 532 (663)
.+++||.+|++.+. | +.|..+ +..+++.+|+.. +..+.||.+.- .+ +..|.+ +|+-- .
T Consensus 68 ~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~-vivvsNP~d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 68 VTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI-LLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEccChHHHHHHHHHHHhCCCHHHEEecCc
Confidence 25788988875442 2 345543 345666778844 55555665432 22 333543 66655 4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
.+-..++-+.+-+.+++++..++
T Consensus 147 ~Ld~~R~~~~la~~l~v~~~~v~ 169 (312)
T cd05293 147 NLDSARFRYLIAERLGVAPSSVH 169 (312)
T ss_pred hHHHHHHHHHHHHHhCCChhhEE
Confidence 55555677777777777775544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.31 Score=50.10 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=54.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-c-CCCEEEecCCCHHHHHhc------C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L-GFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~-~~~vi~GD~~~~~~L~~a------~ 474 (663)
+.++|.|. |.+|+.+++.|. ++|++|++.++|+++.+...+ . ...++.+|.+|++.++++ .
T Consensus 6 ~~ilVtGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 6 KVVAITGGARGIGLATARALA----------ALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH
Confidence 46888886 889999999997 789999999999998776654 2 377889999999875431 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
....|.+|...
T Consensus 76 ~~~id~li~~a 86 (273)
T PRK07825 76 LGPIDVLVNNA 86 (273)
T ss_pred cCCCCEEEECC
Confidence 24567666543
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.3 Score=50.09 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=52.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. +.+|+.+++.|. ++|++|++.++|++..+...+ ....++.+|.+|++-.+++
T Consensus 9 k~~lItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLA----------RAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46788887 679999999998 789999999999887655443 1356789999999866543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.+|...
T Consensus 79 ~~~~~g~iD~lv~na 93 (263)
T PRK08339 79 ELKNIGEPDIFFFST 93 (263)
T ss_pred HHHhhCCCcEEEECC
Confidence 123467666544
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.24 Score=49.98 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=55.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a---- 473 (663)
++++|.|. |.+|+.+++.|. +.|++|++++++++..+...+. ...++.+|.+|++.++++
T Consensus 6 k~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFA----------REGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHH----------HCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46888876 899999999997 7899999999998876554432 357789999999877653
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
...+.|.++-+..
T Consensus 76 ~~~~~~id~vi~~ag 90 (252)
T PRK06138 76 AARWGRLDVLVNNAG 90 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 2246787766554
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.6 Score=44.25 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=54.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC---CC-EEEEeC-ChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WP-FVAFDL-NPSVVKESRK-LGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~---~~-vvvid~-d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++.|+|.|++|..+++.|. +.+ .+ +++.++ ++++.+.+.+ .+..+ .. +.++.+ ++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-----~~ 66 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLL----------KTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-TT--DWKQHV-----TS 66 (245)
T ss_pred CeEEEECcCHHHHHHHHHHH----------hCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-eC--ChHHHH-----hc
Confidence 46999999999999999986 332 33 666775 5778877765 34322 11 122333 57
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+|.|++++.++...- ++...+...++ +++..+.
T Consensus 67 ~DiViiavp~~~~~~-v~~~l~~~~~~-~~vis~~ 99 (245)
T PRK07634 67 VDTIVLAMPPSAHEE-LLAELSPLLSN-QLVVTVA 99 (245)
T ss_pred CCEEEEecCHHHHHH-HHHHHHhhccC-CEEEEEC
Confidence 899999999865432 33333433233 4444443
|
|
| >TIGR00832 acr3 arsenical-resistance protein | Back alignment and domain information |
|---|
Probab=92.18 E-value=18 Score=38.46 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=69.7
Q ss_pred cccCchhHHHHHHHHHHhccC--CCcCCch-----hHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQL--GIIRNLT-----DVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~--glv~~~~-----~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+|+-...++..++.|+++|.+ +.....+ .+..-..+.++++||..|++++++++++..|+...... +.+..+
T Consensus 5 ~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~-~~~~qf 83 (328)
T TIGR00832 5 ERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLIL-SLFINW 83 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHH-HHHHHH
Confidence 344344455666667777742 1110011 11112334667899999999999999987766443322 233333
Q ss_pred HHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 006034 77 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDI 156 (663)
Q Consensus 77 ~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di 156 (663)
+..-.+ +.++...+++ ....+.+|..+..+.|......+-. ++.+.+.. +.++...++-+
T Consensus 84 vi~Pll--------a~~l~~l~~~----------~~p~l~~GliLv~~~Pgg~~S~v~T-~lAkGnva-lsv~lt~~stL 143 (328)
T TIGR00832 84 IIGPFL--------MFLLAWLFLR----------DLFEYIAGLILLGLARCIAMVFVWN-QLAKGDPE-YTLVLVAVNSL 143 (328)
T ss_pred HHHHHH--------HHHHHHHHcC----------CCHHHHHHHHHHHhcchHHHHHHHH-HHcCCCHH-HHHHHHHHHHH
Confidence 333222 1111222333 2234677776666555555443322 12233332 45555567777
Q ss_pred HHHHHH
Q 006034 157 AVVPLL 162 (663)
Q Consensus 157 ~~i~~l 162 (663)
.++++.
T Consensus 144 l~~~~~ 149 (328)
T TIGR00832 144 FQVFLY 149 (328)
T ss_pred HHHHHH
Confidence 665555
|
The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. |
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.29 Score=49.74 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=53.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ .....+.+|.+|++.++++
T Consensus 3 k~~lItGas~giG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLV----------EDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46777775 789999999998 789999999999877655433 2345688999999866442
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|.+.
T Consensus 73 ~~~~~~~id~vi~~a 87 (256)
T PRK08643 73 VVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 224567776654
|
|
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
Probab=92.14 E-value=2 Score=49.09 Aligned_cols=66 Identities=20% Similarity=0.530 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcc----CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 11 ILGFFFAGIVLNQ----LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 11 ivg~ilaGillGp----~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+.|-+++|+++|. +|..-+....+++.++|+.+++|.+|++.-++.+...++..+...+.+++++.
T Consensus 33 ~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~ 102 (552)
T PRK03818 33 IGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVI 102 (552)
T ss_pred cHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3789999999998 56544556777899999999999999999998776666554544444444443
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.31 Score=49.79 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=53.5
Q ss_pred CCcEEEEcC-C-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGF-G-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~-g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~ 472 (663)
.+.++|.|. | .+|+.+++.|. ++|++|+++|+++++.+...+ .....+.+|.+|++..++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~----------~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRAL----------EEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 467899997 5 59999999997 789999999998877654432 135578899999876543
Q ss_pred c------CCCCCcEEEEEcC
Q 006034 473 A------GITSPKAVMIMYT 486 (663)
Q Consensus 473 a------~i~~a~~vv~~~~ 486 (663)
+ ...+.|.+|-..+
T Consensus 87 ~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 87 LIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 2 1235677666554
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.3 Score=49.26 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHh---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLS--- 472 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~--- 472 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ . ....+..|.+|++.+++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLA----------QKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 357899997 999999999997 788999999999877554432 2 24568899999876543
Q ss_pred ---cCCCCCcEEEEEcC
Q 006034 473 ---AGITSPKAVMIMYT 486 (663)
Q Consensus 473 ---a~i~~a~~vv~~~~ 486 (663)
......|.+|-..+
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 75 QIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 12245687776543
|
|
| >TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication | Back alignment and domain information |
|---|
Probab=92.13 E-value=11 Score=35.58 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhCCc--HHHHHHHhhhhccCCc-hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhh---hHHHHHHH
Q 006034 225 TVAGTSLLTQKLGFS--DTLGAFLAGAILAETN-FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---EWPNVLAL 298 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s--~~lgAflaGl~l~~~~-~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~---~~~~~l~~ 298 (663)
+....+++.+.+|++ ..+|+++++.++.-.. ...+..+.. ..+..-+.=..+|.+++...+.+ .+...+..
T Consensus 6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~---~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~ 82 (156)
T TIGR03082 6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWL---LALAQVVIGILIGSRFTREVLAELKRLWPAALLS 82 (156)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHH---HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 334455677888887 6788888888777432 111111111 22233333467889998877643 34445555
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 006034 299 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSL 344 (663)
Q Consensus 299 ~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~ 344 (663)
.+..+..-.+..++..++.++++.+++. + ..|.|.-++.....
T Consensus 83 ~~~~l~~~~~~~~~l~~~~~~~~~ta~L-a--~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 83 TVLLLALSALLAWLLARLTGVDPLTAFL-A--TSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCchHHHHHHHHH
Confidence 5566666777788888899999998863 3 57888877776554
|
The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.4 Score=40.84 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=60.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH----Hh----cCCCEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RK----LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~----~~----~~~~vi~GD~~~~~~L~~a~i 475 (663)
+|.|+|. |++|+.++..|.. .....+++++|.++++.+-. .+ ...+..... .+.+. +
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~--------~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~-----~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQ--------QGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEA-----L 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHH--------TTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGG-----G
T ss_pred EEEEECCCChHHHHHHHHHHh--------CCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccc-----c
Confidence 6899999 9999999999863 23455799999998764332 22 223333333 44433 4
Q ss_pred CCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 476 TSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 476 ~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
++||.+|++.+.. +.|.. ++...++.+|+. ++..+.||-+
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~-~vivvtNPvd 122 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDA-IVIVVTNPVD 122 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE-SSSHH
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEEeCCcHH
Confidence 6889787776541 34444 334456667774 4555566544
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.27 Score=47.06 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=56.9
Q ss_pred EEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcC
Q 006034 407 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486 (663)
Q Consensus 407 iI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~ 486 (663)
||+--|+.|..++++.. ++|++|+.|-+|+.+.... ++..++++|..|++-+ ...+..-|+||.+.+
T Consensus 5 iIgAsG~~Gs~i~~EA~----------~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~ 71 (211)
T COG2910 5 IIGASGKAGSRILKEAL----------KRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSL-ASDLAGHDAVISAFG 71 (211)
T ss_pred EEecCchhHHHHHHHHH----------hCCCeeEEEEeChHhcccc--ccceeecccccChhhh-HhhhcCCceEEEecc
Confidence 44446999999999997 8999999999999987543 5788999999999998 457888899988765
Q ss_pred C
Q 006034 487 D 487 (663)
Q Consensus 487 d 487 (663)
-
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 3
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.22 Score=51.04 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.++++|. ++|++|+++++|++..+.. .+..++.+|.+|++.++++ ...
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLA----------RAGYRVFGTSRNPARAAPI--PGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCChhhcccc--CCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 46888875 889999999998 7899999999998765432 4678899999999877653 123
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
+.|.+|.+.+
T Consensus 73 ~~d~li~~ag 82 (270)
T PRK06179 73 RIDVLVNNAG 82 (270)
T ss_pred CCCEEEECCC
Confidence 5677766554
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.7 Score=46.13 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHH----Hhc----CCCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKES----RKL----GFPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~----~~~----~~~vi~GD~~~~~~L~ 471 (663)
...+|.|+|.|++|..++-.|. ..+. +++++|.|+++++-. .+. ....+.+ .+.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~----------~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~~~--- 69 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALV----------NQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GDYS--- 69 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CCHH---
Confidence 3458999999999999999886 4454 799999988874332 221 1112232 2322
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHcCCC--eEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Gad--~vi~p 531 (663)
..++||.+|++.+. | ..|..+ +..+++.+|+..+ ..+.||.+.- .+ +..|.+ +|+--
T Consensus 70 --~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~v-ivvsNP~d~~~~~~~k~sg~p~~~viG~ 146 (315)
T PRK00066 70 --DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIF-LVASNPVDILTYATWKLSGFPKERVIGS 146 (315)
T ss_pred --HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEccCcHHHHHHHHHHHhCCCHHHEeec
Confidence 25799988886653 2 345554 4456667788554 4455655432 22 233332 34332
Q ss_pred -chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 -NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 -~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
...-..++-+.+-+.+++++..++
T Consensus 147 gt~LDs~R~~~~la~~l~v~~~~V~ 171 (315)
T PRK00066 147 GTSLDSARFRYMLSEKLDVDPRSVH 171 (315)
T ss_pred CchHHHHHHHHHHHHHhCCCcccEE
Confidence 233344555556566677665443
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.32 Score=50.89 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++.++++
T Consensus 41 k~vlItGasggIG~~la~~La----------~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFA----------RRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56888886 999999999997 789999999999987665543 1 245788999998865442
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 111 ~~~~~g~id~li~~A 125 (293)
T PRK05866 111 VEKRIGGVDILINNA 125 (293)
T ss_pred HHHHcCCCCEEEECC
Confidence 234678777654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.9 Score=48.32 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=53.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh----------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---------- 472 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~---------- 472 (663)
+|.|+|.|.+|..+|-.|. +. |++|+.+|.|+++++.+.+.+.+.. +..-++.+++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA----------~~g~g~~V~gvD~~~~~v~~l~~g~~~~~--e~gl~ell~~~~~~~l~~t~ 70 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIA----------LKCPDIEVVVVDISVPRIDAWNSDQLPIY--EPGLDEVVKQCRGKNLFFST 70 (473)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCeEEEEECCHHHHHHHHcCCCccC--CCCHHHHHHHhhcCCEEEEc
Confidence 4899999999999999997 44 6889999999999999987655442 4444555433
Q ss_pred ---cCCCCCcEEEEEcC
Q 006034 473 ---AGITSPKAVMIMYT 486 (663)
Q Consensus 473 ---a~i~~a~~vv~~~~ 486 (663)
..+++||.++++.+
T Consensus 71 ~~~~~i~~advi~I~V~ 87 (473)
T PLN02353 71 DVEKHVAEADIVFVSVN 87 (473)
T ss_pred CHHHHHhcCCEEEEEeC
Confidence 13567999888764
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.37 Score=48.25 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhc------C
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a------~ 474 (663)
.++++|.|. +.+|+.+++.|. ++|++|++++++++. .+.+.+.+..++.+|.+|++.++++ .
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLL----------AQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQH 71 (236)
T ss_pred CceEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 356888886 679999999997 789999999998764 3444556678889999998876542 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 72 ~~~id~lv~~a 82 (236)
T PRK06483 72 TDGLRAIIHNA 82 (236)
T ss_pred CCCccEEEECC
Confidence 23466666544
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.46 Score=51.66 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=56.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|+++...+...+.+.. . ..+ ++++ ++++|.|+
T Consensus 192 gktVGIvG~G~IG~~vA~~l~----------~fG~~V~~~dr~~~~~~~~~~~g~~--~--~~~---l~el-l~~aDvV~ 253 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLK----------PFDVKLHYTDRHRLPEEVEQELGLT--Y--HVS---FDSL-VSVCDVVT 253 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCchhhHhhcCce--e--cCC---HHHH-hhcCCEEE
Confidence 357999999999999999997 7899999999876433322222321 1 112 2222 46889998
Q ss_pred EEcCCHHH--HHHHHHHHHHhCCCCcEE
Q 006034 483 IMYTDKKR--TIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 483 ~~~~dd~~--n~~~~~~~r~~~~~~~ii 508 (663)
+..+..++ ++.-......+.+...+|
T Consensus 254 l~lPlt~~T~~li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 254 IHCPLHPETEHLFDADVLSRMKRGSYLV 281 (385)
T ss_pred EcCCCCHHHHHHhCHHHHhcCCCCcEEE
Confidence 88887654 333344455555554333
|
|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.25 Score=54.20 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=84.5
Q ss_pred cCCCCcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--HHHH-Hhc--CCCEEEecCCCHHHHH
Q 006034 400 YEGSEPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKES-RKL--GFPILYGDASRPAVLL 471 (663)
Q Consensus 400 ~~~~~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~~~~-~~~--~~~vi~GD~~~~~~L~ 471 (663)
+..++|+++||. ..+...+-+.|.+ +|+.-+.+|+...+-+.. .+-+ .+. .....+|...|+.-|.
T Consensus 354 ehgkkhivvcghityesvshflkdflhe------drddvdvevvflhr~~pdleleglfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 354 EHGKKHIVVCGHITYESVSHFLKDFLHE------DRDDVDVEVVFLHRISPDLELEGLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred hcCCeeEEEecceeHHHHHHHHHHHhhc------cccccceEEEEEecCCCCcchHHHHhhheeeEEEecccccChhhhh
Confidence 467899999996 3344445555542 122334445555442222 2222 222 2567889999999999
Q ss_pred hcCCCCCcEEEEEcCC--------HHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH-------HcCCCeEEcCchHHH
Q 006034 472 SAGITSPKAVMIMYTD--------KKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK-------KAGATDAILENAETS 536 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d--------d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~-------~~Gad~vi~p~~~~~ 536 (663)
+..+++||+.++..+. |..|++-+...|...|++++|...-+-.+...+. +-| |.||+-.+.-=
T Consensus 428 rvki~~adaclvlankyc~dpdaedaanimrvisiknys~dirvi~qlmqyhnkayllnipswdwk~g-ddviclaelkl 506 (1103)
T KOG1420|consen 428 RVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSPDIRVITQLMQYHNKAYLLNIPSWDWKEG-DDVICLAELKL 506 (1103)
T ss_pred heeccccceeeeecccccCCCChhhhhhheEEEEeccCCCchhHHHHHHHhhchheeecCCCcccccC-CceEEehhhhh
Confidence 9999999998877652 5678887778888888888877555444444432 234 44555543322
Q ss_pred HHHHHHHHH
Q 006034 537 LQLGSKLLK 545 (663)
Q Consensus 537 ~~la~~~~~ 545 (663)
--+|...+.
T Consensus 507 gfiaqscla 515 (1103)
T KOG1420|consen 507 GFIAQSCLA 515 (1103)
T ss_pred hhhHHHhhc
Confidence 234444444
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.34 Score=49.14 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=55.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ .....+..|.+|++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAA----------RAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHH
Confidence 356888886 899999999998 789999999999987665543 2356789999998876431
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 75 ~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 75 LALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHcCCccEEEECC
Confidence 234678776655
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.38 Score=49.11 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+. ...++.+|.+|++..+++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFL----------AEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 56888887 679999999998 7899999999999888776542 356789999998866543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~g~id~li~~a 88 (263)
T PRK06200 77 AFGKLDCFVGNA 88 (263)
T ss_pred hcCCCCEEEECC
Confidence 223567665443
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.32 Score=49.25 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. +.|++|+++++++++.+...+ . ....+.+|.+|++.++++
T Consensus 8 k~ilItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFA----------REGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 57888876 799999999997 789999999999887654432 2 356788999998866542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~g~id~li~~a 92 (253)
T PRK06172 78 TIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 113457666543
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.32 Score=51.62 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
++++|.|. |-+|+.+++.|. +.| ++|+++++++...+.+.+ .+..++.||.+|++.++++ ++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~----------~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-~~ 73 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLL----------ENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA-LR 73 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH-Hh
Confidence 46888886 899999999997 443 789999988765443322 2467889999999998765 45
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.++-+.
T Consensus 74 ~iD~Vih~A 82 (324)
T TIGR03589 74 GVDYVVHAA 82 (324)
T ss_pred cCCEEEECc
Confidence 678777543
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.96 Score=47.73 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.8
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
.+|.|+|.|++|..+++.|. +.|++|.+.+++++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~----------~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLAS----------ANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCEEEEEeCCCC
Confidence 46999999999999999998 78999999998864
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.52 Score=42.56 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=55.5
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChH-HH----HHHH---hcCCCEEEecCCCHHHHHhcC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPS-VV----KESR---KLGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~-~~----~~~~---~~~~~vi~GD~~~~~~L~~a~ 474 (663)
+|+|+|+ |++|+.+++.+.+ .++.+ +-++|++++ .. ..+. ..+..+. .|.+-+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~---------~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~---- 64 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILE---------SPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEEL---- 64 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------STTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHh---------cCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHh----
Confidence 5899999 9999999999983 57887 556677772 11 1111 1222222 222222
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHHcCCC
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKKAGAT 526 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~Gad 526 (663)
++++|++|=.| ..+.-......+.+.+ ++++.-. -+++..+.++++...
T Consensus 65 ~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 65 LEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp TTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEECCCCCHHHHHHHHHHhcc
Confidence 22388666665 4444445555666664 3444433 245666777765433
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.85 E-value=10 Score=42.82 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=52.5
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+.+++|+|.|.-|..+++.+++ +....+|-.+|.|++....-- .|.+|+-... =+++.++-+++ -
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~--------~~~~~pV~fiDdd~~~~g~~i-~Gv~V~g~~~-i~~~v~~~~~~---~ 180 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRR--------DPEYTPVAFLDDDPDLTGMKI-RGVPVLGRIE-IERVVEELGIQ---L 180 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHh--------CCCcceEEEECCChhhcCCEE-eceeeechhH-HHHHHHHcCCc---e
Confidence 356789999999999999999973 334667888899986543111 3666666655 67777877766 4
Q ss_pred EEEEcCC
Q 006034 481 VMIMYTD 487 (663)
Q Consensus 481 vv~~~~d 487 (663)
++++.++
T Consensus 181 iiiAips 187 (588)
T COG1086 181 ILIAIPS 187 (588)
T ss_pred EEEecCC
Confidence 5566655
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.31 Score=49.49 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=54.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.++++++.+...+ . ....+.+|.+|++..+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYV----------EAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 56888887 789999999998 789999999999987766543 1 345678999999876553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 80 ~~~~~g~id~lv~~a 94 (253)
T PRK05867 80 VTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 123667776543
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.3 Score=49.03 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=53.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh------cCCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~- 474 (663)
++++|.|. |.+|+.+++.|. +.|++++++ +++++..+.+.+ ....++.+|.+|++.++++=
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~----------~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLA----------KEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 47888886 899999999997 779999999 998887655433 13567889999998775531
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
....|.+|...
T Consensus 76 ~~~~~~~~id~vi~~a 91 (247)
T PRK05565 76 QIVEKFGKIDILVNNA 91 (247)
T ss_pred HHHHHhCCCCEEEECC
Confidence 12567776544
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.18 Score=48.80 Aligned_cols=39 Identities=28% Similarity=0.647 Sum_probs=32.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
+|.|+|.|.+|+.+|..+. ..|++|+++|.|++..+...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA----------RAGYEVTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH----------HTTSEEEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHH----------hCCCcEEEEECChHHHHhhh
Confidence 4789999999999999997 78999999999999865544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.4 Score=46.28 Aligned_cols=87 Identities=10% Similarity=-0.033 Sum_probs=59.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a------ 473 (663)
+++|.|...+|..+++.|. +.|++|.+.++++++.+.+.. .....+.+|.+|++.++++
T Consensus 2 ~vlVtGGtG~gg~la~~L~----------~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~ 71 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLC----------EKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE 71 (177)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5889998788888999997 789999999999988766543 2345667899988766542
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
.....|.++.....+- .-.++..+++.+
T Consensus 72 ~~g~id~lv~~vh~~~-~~~~~~~~~~~g 99 (177)
T PRK08309 72 KNGPFDLAVAWIHSSA-KDALSVVCRELD 99 (177)
T ss_pred HcCCCeEEEEeccccc-hhhHHHHHHHHc
Confidence 1234566666666542 223344555554
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.33 Score=52.07 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=51.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH----HHHHHh-------cCCCEEEecCCCHHHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRK-------LGFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~----~~~~~~-------~~~~vi~GD~~~~~~L~ 471 (663)
++++|.|. |-+|+.+++.|. ++|++|+++|+.++. .+...+ .....+.||.+|.+-+.
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~ 85 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELL----------FLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQ 85 (348)
T ss_pred CEEEEECCccHHHHHHHHHHH----------HCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHH
Confidence 47999996 999999999998 678999999985432 111111 23567899999988776
Q ss_pred hcCCCCCcEEEEEc
Q 006034 472 SAGITSPKAVMIMY 485 (663)
Q Consensus 472 ~a~i~~a~~vv~~~ 485 (663)
++ ++++|.||=+.
T Consensus 86 ~~-~~~~d~ViHlA 98 (348)
T PRK15181 86 KA-CKNVDYVLHQA 98 (348)
T ss_pred HH-hhCCCEEEECc
Confidence 54 34678766543
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.38 Score=50.79 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=55.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc------C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a------~ 474 (663)
+.++|.|. |-+|+.+++.|. +.|++|+++++++++.+...+ .+..++.+|.+|++..+++ .
T Consensus 27 k~vlITGasggIG~~~a~~L~----------~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALA----------QAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 56888887 789999999997 789999999999988766543 2478899999999876542 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.+|...
T Consensus 97 ~~~iD~li~nA 107 (315)
T PRK06196 97 GRRIDILINNA 107 (315)
T ss_pred CCCCCEEEECC
Confidence 24678776644
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.37 Score=49.25 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=53.3
Q ss_pred CcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|.+ -+|+.+++.|. ++|++|++++++++..+.+.+ .+..++.+|.+|++.++++
T Consensus 11 ~~vlItGasggIG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFA----------EAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 467888764 69999999997 789999999999887655443 2356788999999977542
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+.|.++-.
T Consensus 81 ~~~~~~~id~vi~~ 94 (263)
T PRK07814 81 AVEAFGRLDIVVNN 94 (263)
T ss_pred HHHHcCCCCEEEEC
Confidence 22467877654
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.45 Score=53.48 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH-HhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~-~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+++.|+|.|..|+.+++.|. +.|.+|.+.|.++....++ .+.|..+..|+-. ++ +++++|.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-~~-----~~~~~d~ 77 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLS----------ELGCDVVVADDNETARHKLIEVTGVADISTAEA-SD-----QLDSFSL 77 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHH----------HCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc-hh-----HhcCCCE
Confidence 3457999999999999999997 7899999999877655443 4457777765322 22 2356787
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
||....=+..|- ....||+.+ ++++.+..
T Consensus 78 vV~Spgi~~~~p-~~~~a~~~g--i~v~~~~e 106 (473)
T PRK00141 78 VVTSPGWRPDSP-LLVDAQSQG--LEVIGDVE 106 (473)
T ss_pred EEeCCCCCCCCH-HHHHHHHCC--CceeeHHH
Confidence 766554444443 344566654 45555433
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.37 Score=48.23 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=55.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a---- 473 (663)
++++|.|. |.+|+.+++.|. +.|++|++.+++++..+.+.+ .+.+.+.+|.+|++.++++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFAL----------KEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred cEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 57888887 779999999997 789999999999988765532 1467789999998877542
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
.....|.++....
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 1234577766654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.6 Score=44.83 Aligned_cols=136 Identities=16% Similarity=0.228 Sum_probs=80.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHH--HH---Hh---cCCC-EEEecCCCHHHHHh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK--ES---RK---LGFP-ILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~--~~---~~---~~~~-vi~GD~~~~~~L~~ 472 (663)
+++|.|+|.|++|..++..+. ..+. +++++|.|++..+ .+ .. .+.. -+.+. +|.+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la----------~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~-~d~~---- 70 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV----------LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT-NNYE---- 70 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-CCHH----
Confidence 357999999999999999886 4553 7999999998542 11 11 1222 23321 2322
Q ss_pred cCCCCCcEEEEEcCC--------------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHH-HHcCC--Ce
Q 006034 473 AGITSPKAVMIMYTD--------------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDL-KKAGA--TD 527 (663)
Q Consensus 473 a~i~~a~~vv~~~~d--------------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~--~~~l-~~~Ga--d~ 527 (663)
.+++||.||.+.+. | ..|.. ++..+++.+|+. ++..+.||.+ ...+ +..|. ++
T Consensus 71 -~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv~sNP~di~t~~~~~~sg~p~~r 148 (321)
T PTZ00082 71 -DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIVITNPLDVMVKLLQEHSGLPKNK 148 (321)
T ss_pred -HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHhcCCChhh
Confidence 35799988875421 1 23443 445566667775 4555556654 2233 33343 35
Q ss_pred EEcCc-hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 528 AILEN-AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 528 vi~p~-~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
|+--- ..-+.++-+.+.+.+++++..++
T Consensus 149 viGlgt~lds~R~~~~la~~l~v~~~~v~ 177 (321)
T PTZ00082 149 VCGMAGVLDSSRLRTYIAEKLGVNPRDVH 177 (321)
T ss_pred EEEecCcccHHHHHHHHHHHhCCCcccce
Confidence 55443 33345666667677777775544
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.4 Score=48.94 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+. ....+.+|.+|++..+++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFV----------AEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 56788886 679999999998 7899999999999887776652 255788999998755432
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~g~id~li~~A 87 (262)
T TIGR03325 76 AFGKIDCLIPNA 87 (262)
T ss_pred HhCCCCEEEECC
Confidence 123557666553
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.63 Score=48.58 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=50.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCCh-----HHHHHHHh-cCCCEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNP-----SVVKESRK-LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~-----~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i 475 (663)
+++|.|. |.+|+.+++.|. +.+ ++|+++|+.. +..+.+.+ .+..++.+|.+|++.++++ +
T Consensus 1 ~ilItGatG~iG~~l~~~l~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~ 69 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYIL----------NEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRL-F 69 (317)
T ss_pred CEEEEcCCchHHHHHHHHHH----------HhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHH-H
Confidence 4788886 999999999997 444 7899888632 22222221 2567889999999988775 3
Q ss_pred C--CCcEEEEEcC
Q 006034 476 T--SPKAVMIMYT 486 (663)
Q Consensus 476 ~--~a~~vv~~~~ 486 (663)
+ ++|.||-+..
T Consensus 70 ~~~~~d~vi~~a~ 82 (317)
T TIGR01181 70 TEHQPDAVVHFAA 82 (317)
T ss_pred hhcCCCEEEEccc
Confidence 3 3788876663
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.29 Score=54.02 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|.+|+.+++.|. ..| .+++++++++++.+.+.+ .+...+. .+-+.+ .+.++|.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~----------~~G~~~V~v~~rs~~ra~~la~~~g~~~i~-----~~~l~~-~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLL----------RKGVGKILIANRTYERAEDLAKELGGEAVK-----FEDLEE-YLAEADI 243 (417)
T ss_pred CCEEEEECChHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHcCCeEee-----HHHHHH-HHhhCCE
Confidence 468999999999999999997 567 789999999998776654 3333221 222332 3468999
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
|+.+|+..+
T Consensus 244 Vi~aT~s~~ 252 (417)
T TIGR01035 244 VISSTGAPH 252 (417)
T ss_pred EEECCCCCC
Confidence 999987654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.37 Score=48.98 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=53.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+...+ .+ ...+.+|.+|++-++++
T Consensus 8 ~~vlItGasg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELA----------RAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 56888887 999999999997 789999999999976544432 23 45588999999977643
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 78 ~~~~~~~~d~vi~~a 92 (262)
T PRK13394 78 VAERFGSVDILVSNA 92 (262)
T ss_pred HHHHcCCCCEEEECC
Confidence 123467766554
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.35 Score=51.70 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=50.2
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-----HHHHHH-------hcCCCEEEecCCCHHHHH
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR-------KLGFPILYGDASRPAVLL 471 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-----~~~~~~-------~~~~~vi~GD~~~~~~L~ 471 (663)
+++|.|. |-+|+.+++.|. +.|++|+++|++++ +.+.+. +.+..++.||.+|++.++
T Consensus 2 ~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~ 71 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLL----------EKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLR 71 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHH----------HCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHH
Confidence 6888886 899999999997 78999999998753 233222 124778999999998776
Q ss_pred hcCCC-CCcEEEEE
Q 006034 472 SAGIT-SPKAVMIM 484 (663)
Q Consensus 472 ~a~i~-~a~~vv~~ 484 (663)
++=-+ +.|.|+=+
T Consensus 72 ~~~~~~~~d~ViH~ 85 (343)
T TIGR01472 72 RIIDEIKPTEIYNL 85 (343)
T ss_pred HHHHhCCCCEEEEC
Confidence 53211 35765533
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.50 E-value=1 Score=46.70 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=82.6
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
-.+.+|+|+|+|-+|..-|+... ..|.+|.++|.|.+|.+.+.+ .+.. ++=-.++++.+++ .+.+||
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~----------glgA~Vtild~n~~rl~~ldd~f~~r-v~~~~st~~~iee-~v~~aD 233 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI----------GLGADVTILDLNIDRLRQLDDLFGGR-VHTLYSTPSNIEE-AVKKAD 233 (371)
T ss_pred CCCccEEEECCccccchHHHHHh----------ccCCeeEEEecCHHHHhhhhHhhCce-eEEEEcCHHHHHH-Hhhhcc
Confidence 46778999999999999999886 789999999999999988887 2333 2223466777765 578899
Q ss_pred EEEEE---cCCHHHHHHHHHHHHHhCCCCcEEEEecCh-----------hhHHHHHHcCCCeEEcCch
Q 006034 480 AVMIM---YTDKKRTIEAVQRLRLAFPAIPIYARAQDM-----------MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 480 ~vv~~---~~dd~~n~~~~~~~r~~~~~~~iia~~~~~-----------~~~~~l~~~Gad~vi~p~~ 533 (663)
.+|-+ .+.+.-.+..-.+.|++.|..-++=.+-|. ........-|+-+...|+.
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~VaNm 301 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANM 301 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecCEEEEecCCC
Confidence 66533 344555666667799998874444333332 2223444556655555543
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.33 Score=48.90 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=52.6
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA--G 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a--~ 474 (663)
+++|.|. |.+|+.+++.|. +.|++|++++++++..+...+ ....++.+|.+|++-++++ .
T Consensus 3 ~vlItGas~giG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 3 KILIIGATSDIARACARRYA----------AAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 6788874 999999999998 789999999999987654432 2456789999998876542 1
Q ss_pred -CCCCcEEEEEc
Q 006034 475 -ITSPKAVMIMY 485 (663)
Q Consensus 475 -i~~a~~vv~~~ 485 (663)
.++.|.++...
T Consensus 73 ~~~~~d~vv~~a 84 (243)
T PRK07102 73 LPALPDIVLIAV 84 (243)
T ss_pred HhhcCCEEEECC
Confidence 12457777543
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.73 Score=48.54 Aligned_cols=135 Identities=20% Similarity=0.244 Sum_probs=78.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH-h--cC-----CC-EEEecCCCHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR-K--LG-----FP-ILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~-~--~~-----~~-vi~GD~~~~~~L~~a 473 (663)
.+|.|+|.|.+|..++..+. ..+. +++++|.|+++.+... + +. .. -+.+ .+|. +
T Consensus 3 ~KI~VIGaG~vG~~ia~~la----------~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~d~---~-- 66 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLA----------LKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-TNDY---E-- 66 (307)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-CCCH---H--
Confidence 37999999999999999996 4443 9999999998753322 1 11 11 1221 1222 2
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCC--CeEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGA--TDAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Ga--d~vi~p-~ 532 (663)
.+.+||.+|++.+. | ..|.. ++..+++.+|+. ++..+.||.+.- .+ +..|. .+++-- .
T Consensus 67 ~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~-~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt 145 (307)
T PRK06223 67 DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDA-IVIVVTNPVDAMTYVALKESGFPKNRVIGMAG 145 (307)
T ss_pred HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHHhCCCcccEEEeCC
Confidence 25799988876421 1 24444 334455566773 444455554332 23 32343 355544 3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
..-..++-+.+-+.+++++..++
T Consensus 146 ~lds~r~~~~la~~l~v~~~~v~ 168 (307)
T PRK06223 146 VLDSARFRTFIAEELNVSVKDVT 168 (307)
T ss_pred CcHHHHHHHHHHHHhCcChhhCc
Confidence 44455666667777777776554
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.37 Score=49.02 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=54.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ . ....+.+|.+|++.++++
T Consensus 13 k~ilItGa~g~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALG----------EAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 57888885 899999999997 789999999999887655442 1 345789999998877431
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
.....|.++-+.+
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1235677766653
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.59 Score=50.86 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++++|+|.+|+-+++.|. +.| .++++..++.++++.+++ .+ |++..-+-|. ..+.++|
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~----------~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~-~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLA----------EKGVKKITIANRTLERAEELAKKLG-----AEAVALEELL-EALAEAD 240 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHH----------hCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHH-HhhhhCC
Confidence 3468999999999999999998 566 689999999999998886 44 4444333333 3578999
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.|+.+|+...
T Consensus 241 vVissTsa~~ 250 (414)
T COG0373 241 VVISSTSAPH 250 (414)
T ss_pred EEEEecCCCc
Confidence 9999998753
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.32 Score=54.87 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=52.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|+|.|.+|+.+++.|. ..|. +++++++++++++.+.+. +..+..-+..+ +. ..+.++|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~----------~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d---l~-~al~~aD 331 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLV----------SKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE---ML-ACAAEAD 331 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHH----------hCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh---HH-HHHhcCC
Confidence 467999999999999999997 6675 699999999999888763 33222222222 22 2357899
Q ss_pred EEEEEcCCH
Q 006034 480 AVMIMYTDK 488 (663)
Q Consensus 480 ~vv~~~~dd 488 (663)
.|+.+|+..
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998764
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.7 Score=48.81 Aligned_cols=134 Identities=20% Similarity=0.194 Sum_probs=79.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHH-HHh--cCC-----CEEEecCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE-SRK--LGF-----PILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~-~~~--~~~-----~vi~GD~~~~~~L~~a~ 474 (663)
++.|+|.|.+|..++..|. ..| .+++++|.|+++.+. +.+ +.. ..++ .+|.+ .
T Consensus 2 kI~IIGaG~VG~~~a~~l~----------~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~~-----~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL----------LRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDYA-----D 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCHH-----H
Confidence 4899999999999999997 556 689999999987652 332 111 1112 12322 2
Q ss_pred CCCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHHH-HcCC--CeEEcC-ch
Q 006034 475 ITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDLK-KAGA--TDAILE-NA 533 (663)
Q Consensus 475 i~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~--~~~l~-~~Ga--d~vi~p-~~ 533 (663)
+++||.++++.+.. ..|.. .+..+++.+|+..++... ||.+ ...+. ..|. .+|+-- ..
T Consensus 65 l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t-NP~d~~~~~~~~~sg~p~~~viG~gt~ 143 (308)
T cd05292 65 CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT-NPVDVLTYVAYKLSGLPPNRVIGSGTV 143 (308)
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHHHHHHHCcCHHHeecccch
Confidence 68999888887641 12443 445556667775555554 4432 22232 2343 245533 33
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHH
Q 006034 534 ETSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 534 ~~~~~la~~~~~~~~~~~~~~~~ 556 (663)
+-+.++-+.+-+.+++++..+..
T Consensus 144 LDs~R~~~~la~~~~v~~~~v~~ 166 (308)
T cd05292 144 LDTARFRYLLGEHLGVDPRSVHA 166 (308)
T ss_pred hhHHHHHHHHHHHhCCCccceec
Confidence 33456666666677777755543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.39 Score=49.37 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLV----------AAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARA 76 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHH
Confidence 367899996 899999999997 789999999999877554432 1356788999998866542
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 77 VDAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 123567777554
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.74 Score=51.71 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-------------HHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-------------PAV 469 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-------------~~~ 469 (663)
..+++|+|+|..|...++.+. ..|..|+++|.++++.+.+++.|..++.=|..+ ++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak----------~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAAN----------SLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 468999999999999999997 788899999999999988888777765544311 111
Q ss_pred H------HhcCCCCCcEEEEEc---CCHHHHHHHHHHHHHhCCCCcEE
Q 006034 470 L------LSAGITSPKAVMIMY---TDKKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 470 L------~~a~i~~a~~vv~~~---~dd~~n~~~~~~~r~~~~~~~ii 508 (663)
. -.-.++++|.++.+. +...--+..-.+.+.+.|...|+
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1 112357799887666 32222234445567777774444
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.3 Score=57.25 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHH-HHhcCCCC
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAV-LLSAGITS 477 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~-L~~a~i~~ 477 (663)
+..++|+|.|. |-+|+.+++.|.+ +.|++|+++|++++....... .+.+++.||.+|++. ++++ +++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~---------~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~-l~~ 382 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLR---------DDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH-IKK 382 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHh---------CCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH-hcC
Confidence 44567999995 9999999999971 357999999998865443332 467889999998654 4432 457
Q ss_pred CcEEE
Q 006034 478 PKAVM 482 (663)
Q Consensus 478 a~~vv 482 (663)
+|+|+
T Consensus 383 ~D~Vi 387 (660)
T PRK08125 383 CDVVL 387 (660)
T ss_pred CCEEE
Confidence 88776
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.82 Score=47.17 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=72.7
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEE-Ee-CChHHH-HHHHh-cC---CCEEEecCCCHHHHHhcCCC
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FD-LNPSVV-KESRK-LG---FPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id-~d~~~~-~~~~~-~~---~~vi~GD~~~~~~L~~a~i~ 476 (663)
+|.|+| +|++|+.+++.+.+ .++.+++. +| .+++.. +.+.+ .+ ..+.. .+|.+.+ ..
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~---------~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~--~~d~~~l----~~ 67 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALA---------AEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV--TDDLEAV----ET 67 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccCCCHHHhcCcCcCCcee--eCCHHHh----cC
Confidence 689999 69999999999972 56777655 56 333331 11111 01 11111 1333434 25
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE--ecChhhHHHH----HHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR--AQDMMHLLDL----KKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~--~~~~~~~~~l----~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
++|++|.+|+. +.-...+..+.+.+. ++++- .-+++..+.+ ++.|+-.++.|+...|..+..++++
T Consensus 68 ~~DvVIdfT~p-~~~~~~~~~al~~g~--~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~ 139 (266)
T TIGR00036 68 DPDVLIDFTTP-EGVLNHLKFALEHGV--RLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLE 139 (266)
T ss_pred CCCEEEECCCh-HHHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 68988888755 344455556666653 44542 2455455444 4456667888999877777766665
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.36 Score=54.21 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++++|+|.|..|...|..|. +.|++|+++|+++. ..+.+.+.|..+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLA----------RAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------hCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999998 78999999997642 1344555677776
Q ss_pred EecCCCHHH-HHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRPAV-LLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~~~-L~~a~i~~a~~vv~~~~dd 488 (663)
.+.....++ .++. ..++|.++++++..
T Consensus 212 ~~~~v~~~~~~~~~-~~~~d~vvlAtGa~ 239 (471)
T PRK12810 212 TNVEVGKDITAEEL-LAEYDAVFLGTGAY 239 (471)
T ss_pred eCCEECCcCCHHHH-HhhCCEEEEecCCC
Confidence 654432111 1111 13689999998763
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.4 Score=48.12 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=54.3
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ . ...++.+|.+|++.++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALA----------KEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence 356888885 689999999997 789999999999876554332 2 355788999999877553
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|.+.
T Consensus 77 ~~~~~~~~id~vi~~a 92 (239)
T PRK07666 77 QLKNELGSIDILINNA 92 (239)
T ss_pred HHHHHcCCccEEEEcC
Confidence 124678777654
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.52 Score=53.23 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=35.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
++|-|+|.|.+|..+|+.+. ..|++|++.|.+++..+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la----------~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA----------SAGHQVLLYDIRAEALARA 44 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 56999999999999999997 7899999999999988654
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.37 Score=49.10 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++-++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~----------~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLA----------RAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35888887 889999999997 788999999999877554432 2356788999998876543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 72 ~~~~~~~id~vi~~a 86 (263)
T PRK06181 72 AVARFGGIDILVNNA 86 (263)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567776654
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.4 Score=48.34 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=53.8
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.| .|.+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFA----------AKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVF 72 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHH
Confidence 4688887 5889999999997 778999999999987665542 1356788999999866431
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.++...
T Consensus 73 ~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 73 AEFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 234677776654
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.69 Score=47.66 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF 457 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~ 457 (663)
...++=-+|.|.+|..++..|. +.|++|+|-|++.++++.+.+.|.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLi----------k~G~kVtV~dr~~~k~~~f~~~Ga 79 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLI----------KAGYKVTVYDRTKDKCKEFQEAGA 79 (327)
T ss_pred ccceeeEEeeccchHHHHHHHH----------HcCCEEEEEeCcHHHHHHHHHhch
Confidence 4678999999999999999998 899999999999999988876553
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.45 Score=48.28 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hc--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+.+. +. ...++.+|.+|++.++++
T Consensus 12 k~ilItGas~~IG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALA----------GAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46777765 889999999997 78999999999987655433 22 367889999999876542
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|...+
T Consensus 82 ~~~~~~~id~vi~~ag 97 (256)
T PRK06124 82 IDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1235677765443
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.35 Score=56.45 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. ..|++|+++|.+++ ..+.+.+.|..+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~----------~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 378 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILA----------RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFH 378 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEE
Confidence 4678999999999999999998 78999999998873 3455666777776
Q ss_pred EecCCC-HHHHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASR-PAVLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~-~~~L~~a~i~~a~~vv~~~~d 487 (663)
.+.--. .-.+++. ..+.|+++++++.
T Consensus 379 ~~~~v~~~~~~~~l-~~~~DaV~latGa 405 (639)
T PRK12809 379 LNCEIGRDITFSDL-TSEYDAVFIGVGT 405 (639)
T ss_pred cCCccCCcCCHHHH-HhcCCEEEEeCCC
Confidence 654221 1122221 2468999999875
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.49 Score=50.66 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH-----HHHh--cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----ESRK--LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~-----~~~~--~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|.|. |-+|+.+++.|. ++|++|++++++++... .+.. ....++.+|.+|++.+.++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 78 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILL----------ERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA- 78 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH-
Confidence 357999998 999999999997 78999999998766422 1111 1356788999999988764
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++.+|.|+-+.
T Consensus 79 ~~~~d~Vih~A 89 (342)
T PLN02214 79 IDGCDGVFHTA 89 (342)
T ss_pred HhcCCEEEEec
Confidence 34678777665
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.44 Score=49.18 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=53.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+...+ .....+.+|.+|++.++++
T Consensus 19 k~~lItGas~gIG~~la~~l~----------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFH----------KHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 45788875 789999999997 789999999998876655443 2466889999999877653
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 89 ~~~~g~id~li~~A 102 (280)
T PLN02253 89 VDKFGTLDIMVNNA 102 (280)
T ss_pred HHHhCCCCEEEECC
Confidence 123567666543
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.47 Score=48.18 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=52.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++|+++++.+...+ ....++.+|.+|++-++++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLI----------AEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 56888886 899999999997 789999999999877655443 2356789999998765432
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 81 ~~g~id~li~~a 92 (255)
T PRK05717 81 QFGRLDALVCNA 92 (255)
T ss_pred HhCCCCEEEECC
Confidence 123567776543
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.75 Score=50.32 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCC----------hHHHHHHHhcCCCE--EEe--cCCCH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLN----------PSVVKESRKLGFPI--LYG--DASRP 467 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d----------~~~~~~~~~~~~~v--i~G--D~~~~ 467 (663)
..+++|.|+|++|+.+++.|. +.|.+|+ |-|.+ .+.+.+..+.+-.+ +.| ..+++
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~----------e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~ 275 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIH----------EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPD 275 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCc
Confidence 457999999999999999997 7899999 66776 55553333211111 111 12344
Q ss_pred HHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHcCCCeEEcCc
Q 006034 468 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~Gad~vi~p~ 532 (663)
++|. .++|.++=+.-.. ..-...+.++ ++++|+..- +++..+.|++-|+- +.|.
T Consensus 276 e~l~----~~~DvliP~Al~~---~I~~~na~~i--~ak~I~egAN~p~t~ea~~~L~~rGI~--~~PD 333 (410)
T PLN02477 276 DILV----EPCDVLIPAALGG---VINKENAADV--KAKFIVEAANHPTDPEADEILRKKGVV--VLPD 333 (410)
T ss_pred ccee----ccccEEeeccccc---cCCHhHHHHc--CCcEEEeCCCCCCCHHHHHHHHHCCcE--EECh
Confidence 4443 2888665554333 3333345555 456777543 35678889998874 4476
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.69 Score=47.05 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=51.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++ +..+...+.....+..|.+|++-+++. ..+.|.+
T Consensus 15 k~~lITGas~gIG~ala~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~iDil 83 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFR----------AKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQ-LASLDVL 83 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHh-cCCCCEE
Confidence 56888887 679999999997 7899999999987 332222222235678999999877653 4567877
Q ss_pred EEEc
Q 006034 482 MIMY 485 (663)
Q Consensus 482 v~~~ 485 (663)
|...
T Consensus 84 VnnA 87 (245)
T PRK12367 84 ILNH 87 (245)
T ss_pred EECC
Confidence 6654
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.21 Score=47.77 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEec
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD 463 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD 463 (663)
...+++|+|.|+.|+..++.+. ..|.++++.|.++++.+.....+...+.=+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~----------~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAK----------GLGAEVVVPDERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSHHHHHHHHHTTTEESEET
T ss_pred CCeEEEEECCCHHHHHHHHHHh----------HCCCEEEeccCCHHHHHhhhcccCceEEEc
Confidence 3468999999999999999997 799999999999999888877655544433
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.6 Score=44.01 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChH-------------------HHH----HHHhc--C
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS-------------------VVK----ESRKL--G 456 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~-------------------~~~----~~~~~--~ 456 (663)
+.||+|+|.|-+|..+++.|. ..|. +++++|.|.= +++ ++.+. .
T Consensus 11 ~~~VlVvG~GGvGs~va~~La----------r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALA----------RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 458999999999999999997 5565 7999997741 122 22221 1
Q ss_pred C--CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 457 F--PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 457 ~--~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
. ..+....+ ++...+.--++.|.||.++++-+.-..+...+++.+ +++|.
T Consensus 81 ~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~ 132 (231)
T cd00755 81 CEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVIS 132 (231)
T ss_pred cEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEE
Confidence 2 22333333 223333223468999888888777777777788875 45555
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.6 Score=37.69 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=64.6
Q ss_pred EEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 439 FVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 439 vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
|.++|.|+...+.+.+ .++..+.-=.+-.+.++...-...|.+++-.+-+ ..-...+..+|+.+|+.++++..++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 5788999988666543 4552333223344556666667799888776443 4556678888999999998887754
Q ss_pred --hhhHHHHHHcCCCeEEcCc
Q 006034 514 --MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 514 --~~~~~~l~~~Gad~vi~p~ 532 (663)
........++|++.++.-.
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp 101 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKP 101 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESS
T ss_pred CCHHHHHHHHHCCCCEEEECC
Confidence 4577788899999776654
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.47 Score=47.72 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=53.4
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH----Hhc--CCCEEEecCCCHHHHHhc--C
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKL--GFPILYGDASRPAVLLSA--G 474 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~----~~~--~~~vi~GD~~~~~~L~~a--~ 474 (663)
++++|.| .|.+|+.+++.|. ++|++|+++++++++.+.. .+. ...++.+|.+|++.++++ +
T Consensus 7 ~~ilItGasg~iG~~l~~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLA----------ADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4688888 5999999999997 7899999999997654433 332 266789999999877663 1
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.++...
T Consensus 77 ~~~~~~~~d~vi~~a 91 (251)
T PRK12826 77 GVEDFGRLDILVANA 91 (251)
T ss_pred HHHHhCCCCEEEECC
Confidence 13677776665
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.35 Score=50.27 Aligned_cols=127 Identities=14% Similarity=0.069 Sum_probs=74.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|.|..|+.+++.|. +.| .+|.++++++++.+.+.+.-......+. +.+ ....+.++|.+
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~----------~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~--~~~~~~~~Div 189 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLL----------DLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLE--LQEELADFDLI 189 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhhhccceee-ccc--chhccccCCEE
Confidence 457999999999999999997 677 7899999999998887653111000011 001 12345789999
Q ss_pred EEEcCCHHHH-HHH-HHHHHHhCCCCcEEEEecChhhH---HHHHHcCCCeEEcCchHHHHHHHHHH
Q 006034 482 MIMYTDKKRT-IEA-VQRLRLAFPAIPIYARAQDMMHL---LDLKKAGATDAILENAETSLQLGSKL 543 (663)
Q Consensus 482 v~~~~dd~~n-~~~-~~~~r~~~~~~~iia~~~~~~~~---~~l~~~Gad~vi~p~~~~~~~la~~~ 543 (663)
|.+|+....+ ... -.....+.++..++=.+.++... +..++.|+ .+++-....-.|-+...
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~-~~~~G~~Ml~~Qa~~~f 255 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGA-RTIDGLGMLVHQAAEAF 255 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcC-eecCCHHHHHHHHHHHH
Confidence 8888754211 000 00112334443455455565544 44566787 56676654333433333
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.51 Score=52.53 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH----HHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~----~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|+|.|+.|...++.|. +.|++|++.|.+++. .+.+.+.|..+..|+-. .+.+.+ .+
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~----------~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~----~~ 69 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLH----------KLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP-LELLDE----DF 69 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC-HHHhcC----cC
Confidence 357999999999999999997 899999999976532 34456667777766433 233321 37
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
|.+|...+=+..| .....||+.+ ++++.+
T Consensus 70 d~vV~s~gi~~~~-~~~~~a~~~~--i~v~~~ 98 (447)
T PRK02472 70 DLMVKNPGIPYTN-PMVEKALEKG--IPIITE 98 (447)
T ss_pred CEEEECCCCCCCC-HHHHHHHHCC--CcEEeH
Confidence 8666655322233 3455666654 455544
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.39 Score=51.15 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH------h-cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR------K-LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~------~-~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|.| .|-+|+.+++.|. +.|++|+++.+|++...... + ....++.||.+|++.+.++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 77 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLL----------QKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAP- 77 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHH----------HCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHH-
Confidence 35688888 6889999999998 78999988877765432211 1 1367889999999887664
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++++|.|+-+.
T Consensus 78 ~~~~d~vih~A 88 (338)
T PLN00198 78 IAGCDLVFHVA 88 (338)
T ss_pred HhcCCEEEEeC
Confidence 34678777544
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.41 Score=49.36 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=54.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ . ....+.+|.+|++-++++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELA----------RAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 356788886 889999999997 789999999999877655433 2 256789999998866532
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 80 ~~~~~~g~id~li~~ag 96 (278)
T PRK08277 80 QILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 2346787776543
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.69 Score=50.70 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++++|.|. |-+|+.++++|. ++|.+|+++++++++.+...+ .+...+..|.+|++.+++. .++.|
T Consensus 179 K~VLITGASgGIG~aLA~~La----------~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~-l~~ID 247 (406)
T PRK07424 179 KTVAVTGASGTLGQALLKELH----------QQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAEL-LEKVD 247 (406)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHH-hCCCC
Confidence 56888887 899999999997 789999999998876543322 1345788999999987653 45788
Q ss_pred EEEEE
Q 006034 480 AVMIM 484 (663)
Q Consensus 480 ~vv~~ 484 (663)
.+|..
T Consensus 248 iLInn 252 (406)
T PRK07424 248 ILIIN 252 (406)
T ss_pred EEEEC
Confidence 77754
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.76 Score=42.03 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=59.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHH-------------------HHH----HHh--cCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSV-------------------VKE----SRK--LGF 457 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~-------------------~~~----~~~--~~~ 457 (663)
.+++|+|.|.+|..+++.|. ..|. +++++|.|.=. ++. +.+ ...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~----------~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~ 72 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLA----------RSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDV 72 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHH----------HHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTS
T ss_pred CEEEEECcCHHHHHHHHHHH----------HhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCce
Confidence 58999999999999999997 5666 68999876321 222 222 122
Q ss_pred --CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCC
Q 006034 458 --PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP 503 (663)
Q Consensus 458 --~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~ 503 (663)
..+.-+.++ +...+. ++++|.+|.++++.+....+...+++.+.
T Consensus 73 ~v~~~~~~~~~-~~~~~~-~~~~d~vi~~~d~~~~~~~l~~~~~~~~~ 118 (135)
T PF00899_consen 73 EVEAIPEKIDE-ENIEEL-LKDYDIVIDCVDSLAARLLLNEICREYGI 118 (135)
T ss_dssp EEEEEESHCSH-HHHHHH-HHTSSEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred eeeeeeccccc-cccccc-ccCCCEEEEecCCHHHHHHHHHHHHHcCC
Confidence 233444433 333322 26889998898888888888888888863
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.90 E-value=11 Score=41.87 Aligned_cols=73 Identities=26% Similarity=0.451 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhhhhhHHHHH
Q 006034 269 GLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVV 341 (663)
Q Consensus 269 ~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~--g~~~r~~~~~g~~l~~~G~~~lvl 341 (663)
.+++|+--..-|.++|.+.+.++|..+..+....++...++..+...+. ++|+..++..|..++|..-+.+.-
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 6777777788999999999998888777766666666666666666555 888889999998888776655543
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.4 Score=43.39 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChH---------------------HH----HHHHh--
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS---------------------VV----KESRK-- 454 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~---------------------~~----~~~~~-- 454 (663)
+.||+|+|.|-+|..+++.|. ..|. +++++|.|.- ++ +.+++
T Consensus 19 ~s~VlviG~gglGsevak~L~----------~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLV----------LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 468999999999999999997 5666 4889987721 11 11222
Q ss_pred cCC--CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 455 LGF--PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 455 ~~~--~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
... ..+..+.++.+-..+.-++++|.|+.++++.+....+...+++.+-. .+.+..
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip-~i~~~~ 146 (198)
T cd01485 89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIP-FISCAT 146 (198)
T ss_pred CCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 112 22333343111111222568898887777766667777888887632 344443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.1 Score=50.83 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=36.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
-++|-|+|.|.+|..+|..+. ..|++|++.|.+++..+..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la----------~aG~~V~l~D~~~e~l~~~ 46 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAA----------QAGHTVLLYDARAGAAAAA 46 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 357999999999999999997 7899999999999988774
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.5 Score=48.44 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=53.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h--cCCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K--LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~--~~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|..+++.|. +.|++|++++++++..+... + ....++.+|.+|++-++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFA----------RAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 457888887 899999999997 78999999999987755432 2 1345678999998876543
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
.....|.+|..
T Consensus 79 ~~~~~~~~iD~vi~~ 93 (264)
T PRK07576 79 QIADEFGPIDVLVSG 93 (264)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12356877644
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.53 Score=47.70 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.++++++.+.+.+ .....+.+|.+|++.++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFA----------EEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 35778876 669999999997 789999999999887655442 2356788999998877542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 72 ~~~~~~~id~lI~~a 86 (252)
T PRK07677 72 IDEKFGRIDALINNA 86 (252)
T ss_pred HHHHhCCccEEEECC
Confidence 123567776544
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.5 Score=47.24 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--~ 474 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ . ....+.+|.+|++.+.++ +
T Consensus 6 ~~ilItGasg~iG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLA----------ADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 57888886 899999999997 789999999999887655432 2 255677999999876543 1
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
....|.++-..
T Consensus 76 ~~~~~~~id~vi~~a 90 (246)
T PRK05653 76 AVEAFGALDILVNNA 90 (246)
T ss_pred HHHHhCCCCEEEECC
Confidence 23457776655
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.51 Score=47.55 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=56.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ ....++.+|.+|++.++++
T Consensus 4 ~~ilItGas~~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFA----------EEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 56888885 889999999997 789999999999987665432 2467789999999877654
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|....
T Consensus 74 ~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 74 AEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1235787776664
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.49 Score=47.28 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.||+|+|.|-+|...++.|. ..|. +.++||.|.=.+..... -.+.+.|| +.+++
T Consensus 29 ~~~~V~VvGiGGVGSw~veALa----------RsGig~itlID~D~v~vTN~NR-Qi~A~~~~-----------iGk~K- 85 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALA----------RSGIGRITLIDMDDVCVTNTNR-QIHALLGD-----------IGKPK- 85 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHH----------HcCCCeEEEEecccccccccch-hhHhhhhh-----------cccHH-
Confidence 3469999999999999999998 4555 78999987643321111 11222221 22222
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHcCCCeEEcCch
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~--~~~~~~~l~~~Gad~vi~p~~ 533 (663)
--......++.||++.|-+... ++++.+.+-.-+-|+||+--.
T Consensus 86 ----------v~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD 130 (263)
T COG1179 86 ----------VEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAID 130 (263)
T ss_pred ----------HHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchh
Confidence 1234567889999988766543 677777777779999998764
|
|
| >PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate | Back alignment and domain information |
|---|
Probab=90.63 E-value=18 Score=39.15 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHhccccChhHHhhhHHHHHH---HHHHHHHHHHHHHHHHHhhcCCChHHHHHHH-HhhhhhhhHHHHHH
Q 006034 267 FRGLLLGLFFVTTGSSIDIELLFREWPNVLA---LLAGLIIIKTLIISAIGPRVGLTLQESVRIG-LLLSQGGEFAFVVF 342 (663)
Q Consensus 267 ~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~---~~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g-~~l~~~G~~~lvla 342 (663)
+.++++-.||..+|+..+++.+.+.+..+.. +.........+.....+...+.++.-.+..| ..+...=..+...+
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g 144 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH
Confidence 4678889999999999998887655432222 1122233444444455566788887776654 34444334455555
Q ss_pred HHHHHc-CCCchhhHHHHHHHH--HHHHhh-hHHHHHHhHH
Q 006034 343 SLANRL-GVLPLELNKLLIIVV--VLSMAL-TPLLNEIGRW 379 (663)
Q Consensus 343 ~~a~~~-g~i~~~~~~~lv~~v--vlt~ii-~pi~~~~~~~ 379 (663)
....+. |+-+....++..++. +...++ .|+.++..+|
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555 765555444443332 233344 4665554443
|
The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.54 Score=47.33 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |.+|+.+++.|. +.|++|++++++++..+...++ ....+++|.+|++-.+++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFL----------AEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57888886 899999999998 7899999999998876655432 345678999988754321
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~id~vi~~a 88 (249)
T PRK06500 77 AFGRLDAVFINA 88 (249)
T ss_pred HhCCCCEEEECC
Confidence 124567766543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.7 Score=49.51 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=50.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh--------------cCCCEEEecCC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK--------------LGFPILYGDAS 465 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~--------------~~~~vi~GD~~ 465 (663)
+..++|+++|+|. |....+.++ ..+ .+++++|.|++.++.+++ .+.+++++|+.
T Consensus 296 ~~~~rVL~IG~G~-G~~~~~ll~----------~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~ 364 (521)
T PRK03612 296 ARPRRVLVLGGGD-GLALREVLK----------YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF 364 (521)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh----------CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH
Confidence 4567899999985 433334443 333 699999999999988776 24567888886
Q ss_pred CHHHHHhcCCCCCcEEEEEcCC
Q 006034 466 RPAVLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 466 ~~~~L~~a~i~~a~~vv~~~~d 487 (663)
+ .+++. -++.|.|++-..|
T Consensus 365 ~--~l~~~-~~~fDvIi~D~~~ 383 (521)
T PRK03612 365 N--WLRKL-AEKFDVIIVDLPD 383 (521)
T ss_pred H--HHHhC-CCCCCEEEEeCCC
Confidence 3 34433 2689988887655
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.41 Score=56.03 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---------------------HHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---------------------~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. ..|++|+++|.+++. .+.+.+.|..+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La----------~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~ 261 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLL----------RKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFR 261 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4568999999999999999998 789999999987542 345556777777
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~dd 488 (663)
.+.....+ .+++.. .++|.++++|+..
T Consensus 262 ~~~~v~~dv~~~~~~-~~~DaVilAtGa~ 289 (652)
T PRK12814 262 FNTVFGRDITLEELQ-KEFDAVLLAVGAQ 289 (652)
T ss_pred eCCcccCccCHHHHH-hhcCEEEEEcCCC
Confidence 66542211 112111 2589999998763
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.52 Score=50.31 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ .+ ..++.+|.+|++-++++
T Consensus 9 k~vlITGas~gIG~~la~~la----------~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFA----------RRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46888886 889999999997 789999999999987665442 23 45678999999987654
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.+|-..
T Consensus 79 ~~~~~g~iD~lInnA 93 (334)
T PRK07109 79 AEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHCCCCCEEEECC
Confidence 123567666443
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.79 Score=48.66 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=56.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+.+-|+|+|++|+.+++.++ .-|.+|+..|. .++... +..-.++-.+=+++| .+||.+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~----------afgm~v~~~d~~~~~~~~-----~~~~~~~~~~Ld~lL-----~~sDiv 201 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLK----------AFGMKVIGYDPYSPRERA-----GVDGVVGVDSLDELL-----AEADIL 201 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCeEEEECCCCchhhh-----ccccceecccHHHHH-----hhCCEE
Confidence 467999999999999999997 89999999998 333222 222333333334555 466767
Q ss_pred EEEcCC--HHHHHHHHHHHHHhCCCC
Q 006034 482 MIMYTD--KKRTIEAVQRLRLAFPAI 505 (663)
Q Consensus 482 v~~~~d--d~~n~~~~~~~r~~~~~~ 505 (663)
++.++- +..++.-.....++.+.+
T Consensus 202 ~lh~PlT~eT~g~i~~~~~a~MK~ga 227 (324)
T COG0111 202 TLHLPLTPETRGLINAEELAKMKPGA 227 (324)
T ss_pred EEcCCCCcchhcccCHHHHhhCCCCe
Confidence 666654 456666666677776654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.55 Score=47.87 Aligned_cols=70 Identities=17% Similarity=0.046 Sum_probs=52.3
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc-----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a----- 473 (663)
+++|.|. +.+|+.+++.|. ++|++|+++++|++..+...+ .....+..|.+|++-.+++
T Consensus 2 ~vlItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELL----------KKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 5788876 779999999997 789999999999887655432 2356789999998866542
Q ss_pred -CCCCCcEEEEE
Q 006034 474 -GITSPKAVMIM 484 (663)
Q Consensus 474 -~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 72 ~~~g~id~li~n 83 (259)
T PRK08340 72 ELLGGIDALVWN 83 (259)
T ss_pred HhcCCCCEEEEC
Confidence 23456766654
|
|
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.2 Score=37.94 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=50.1
Q ss_pred hcCCCEEE-ecC-CCHHHHHhcCCCCCcEEEEEcCCH---HHHHHHHHHHHHhCC-CCcEEEEecCh-hhHHHHHHcCCC
Q 006034 454 KLGFPILY-GDA-SRPAVLLSAGITSPKAVMIMYTDK---KRTIEAVQRLRLAFP-AIPIYARAQDM-MHLLDLKKAGAT 526 (663)
Q Consensus 454 ~~~~~vi~-GD~-~~~~~L~~a~i~~a~~vv~~~~dd---~~n~~~~~~~r~~~~-~~~iia~~~~~-~~~~~l~~~Gad 526 (663)
..|+.+++ |.. ..+++.+.+.-.++|.|.+...++ +.-..++..+|+.+| +++++.-=+-. .+.+.+++.|+|
T Consensus 25 ~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 25 DAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe
Confidence 34455444 222 234555666667888777665532 333456677888888 77766533322 234689999999
Q ss_pred eEEcCch
Q 006034 527 DAILENA 533 (663)
Q Consensus 527 ~vi~p~~ 533 (663)
.++.+..
T Consensus 105 ~~~~~~~ 111 (119)
T cd02067 105 AYFGPAT 111 (119)
T ss_pred EEECCHH
Confidence 9999885
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.66 Score=47.18 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=50.8
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|.+ .+|+.+++.|. ++|++|++.++|++..+.+.+ .....+..|.+|++-.+++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIK----------DQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHH----------HCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHH
Confidence 568888985 79999999998 789999999988543333332 2456788999998766542
Q ss_pred --CCCCCcEEEEE
Q 006034 474 --GITSPKAVMIM 484 (663)
Q Consensus 474 --~i~~a~~vv~~ 484 (663)
...+.|.+|..
T Consensus 78 ~~~~g~iD~lv~n 90 (252)
T PRK06079 78 KERVGKIDGIVHA 90 (252)
T ss_pred HHHhCCCCEEEEc
Confidence 23466776643
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.52 Score=50.28 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhcC-
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a~- 474 (663)
.++++|.|. |-+|+.+++.|. ++|++|+++++|+++.+.+.+ .+ ..++..|.+|++-.+++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la----------~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFA----------RRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 357888887 789999999998 789999999999988765443 23 446789999998776531
Q ss_pred -----CCCCcEEEEEcC
Q 006034 475 -----ITSPKAVMIMYT 486 (663)
Q Consensus 475 -----i~~a~~vv~~~~ 486 (663)
....|.+|-..+
T Consensus 77 ~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 77 QAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 245677766543
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.85 Score=45.69 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc-----
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a----- 473 (663)
.++++|.| .|.+|+.+++.|. ++|+.|.+.++++++.+...+ ....++.+|.+|++.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLH----------AQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAE 75 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 35788888 4889999999997 788889889999887766543 2456788999999887654
Q ss_pred -CCCCCcEEEEEcC
Q 006034 474 -GITSPKAVMIMYT 486 (663)
Q Consensus 474 -~i~~a~~vv~~~~ 486 (663)
...+.|.+|-+..
T Consensus 76 ~~~~~id~vi~~ag 89 (245)
T PRK12936 76 ADLEGVDILVNNAG 89 (245)
T ss_pred HHcCCCCEEEECCC
Confidence 2346787776544
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.56 Score=47.67 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++++++|++++..+...+ .....+.+|.+|++.++++
T Consensus 3 k~ilItG~~~~IG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 72 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLA----------EEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALS 72 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHH
Confidence 45788876 689999999998 789999999999876544432 1366789999998876543
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 73 ~~~~~~~~~id~vv~~a 89 (259)
T PRK12384 73 RGVDEIFGRVDLLVYNA 89 (259)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 113567776654
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.9 Score=37.91 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+++|+=+|-|.+- .+|+.|+ +.|.+++++|.+++++. +|...+.-|.+||+.=- -+.||.+
T Consensus 13 ~~gkVvEVGiG~~~-~VA~~L~----------e~g~dv~atDI~~~~a~----~g~~~v~DDitnP~~~i---Y~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFL-DVAKRLA----------ERGFDVLATDINEKTAP----EGLRFVVDDITNPNISI---YEGADLI 74 (129)
T ss_pred cCCcEEEEccchHH-HHHHHHH----------HcCCcEEEEecccccCc----ccceEEEccCCCccHHH---hhCccce
Confidence 56689999999885 5789998 89999999999998543 68999999999997543 3577877
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 514 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~ 514 (663)
-..-.-.|---.+...+|+.+.++.+.-...++
T Consensus 75 YSiRpppEl~~~ildva~aVga~l~I~pL~Ge~ 107 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAVGAPLYIKPLTGEP 107 (129)
T ss_pred eecCCCHHHHHHHHHHHHhhCCCEEEEecCCCC
Confidence 777666666666778888888776565555554
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.63 Score=47.18 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=53.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ . ...++.+|.+|++.++++
T Consensus 7 k~~lItGas~giG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFA----------REGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46888886 679999999998 789999999999887665543 2 355778999998865542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 77 ~~~~~~~id~li~~a 91 (254)
T PRK07478 77 AVERFGGLDIAFNNA 91 (254)
T ss_pred HHHhcCCCCEEEECC
Confidence 123567766544
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.62 Score=52.14 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=59.0
Q ss_pred CCcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+++.|+|.|..|.. +|+.|. +.|++|.+.|.++. ..+.+.+.+..+..|. +++.+ +++|.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~~~~-----~~~d~ 69 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLL----------NLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DAENI-----KDADV 69 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHH----------hCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHC-----CCCCE
Confidence 357999999999999 799997 89999999998653 3445666677776544 34433 46887
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
||+..+=+..|- ....||+.+ ++++.
T Consensus 70 vv~spgi~~~~~-~~~~a~~~~--i~i~~ 95 (461)
T PRK00421 70 VVYSSAIPDDNP-ELVAARELG--IPVVR 95 (461)
T ss_pred EEECCCCCCCCH-HHHHHHHCC--CcEEe
Confidence 765554333333 345566654 44544
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.62 Score=48.04 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc-
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a- 473 (663)
.+++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 78 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELA----------AAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFV 78 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 3457888885 899999999998 789999999998876554432 1 345678999999987542
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 79 ~~~~~~~~~id~vi~~A 95 (274)
T PRK07775 79 AQAEEALGEIEVLVSGA 95 (274)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 234567666554
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.63 Score=51.32 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=50.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH----HHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~----~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++|.|+|+|.-|+.+++.|. +.|++|.+.|.++.. ...+...+..+..|.-.+ ....++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~----------~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~------~~~~~~ 70 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLL----------KLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD------EDLAEF 70 (448)
T ss_pred CCEEEEEecccccHHHHHHHH----------HCCCeEEEEcCCCCccchhhhhhhccCceeecCccch------hccccC
Confidence 568999999999999999998 899999999988776 222334567777775444 245677
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.||..-+
T Consensus 71 d~vV~SPG 78 (448)
T COG0771 71 DLVVKSPG 78 (448)
T ss_pred CEEEECCC
Confidence 86655443
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.54 Score=48.42 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=72.1
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHHh----cC-C---CEEEecCCCHHHHHh
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRK----LG-F---PILYGDASRPAVLLS 472 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~~----~~-~---~vi~GD~~~~~~L~~ 472 (663)
+.|+|. |.+|..++..|. ..+ .+++++|.|+++.+.... .- . .-++. .+|. +
T Consensus 1 I~IIGagG~vG~~ia~~l~----------~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~----~ 65 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA----------DGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDP----Y 65 (263)
T ss_pred CEEECCCChHHHHHHHHHH----------hCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCch----H
Confidence 478999 999999999886 444 789999999977544332 10 0 11221 2231 2
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHH-cCC--CeEEcCc
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAILEN 532 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l~~-~Ga--d~vi~p~ 532 (663)
..+++||.||.+.+. | ..|+. ++..+++.+|+..++.. .||.+.- .+.+ .|. .+++---
T Consensus 66 ~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~-tNP~d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 66 EAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV-SNPVDIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHHHHHHHhCCCchhEEEee
Confidence 335789988884422 1 23443 45566777888654444 5654332 3333 233 3455443
Q ss_pred hHHHHHHHHHHHHhcCCCH
Q 006034 533 AETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~ 551 (663)
.....++-+.+-+.+++++
T Consensus 145 ~ld~~r~~~~la~~l~v~~ 163 (263)
T cd00650 145 TLDPIRFRRILAEKLGVDP 163 (263)
T ss_pred cchHHHHHHHHHHHhCCCc
Confidence 2223344444444455555
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.00 E-value=2.9 Score=44.13 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=81.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh-c---C-CC-EEEecCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK-L---G-FP-ILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~-~---~-~~-vi~GD~~~~~~L~~a~ 474 (663)
+|.|+|.|++|..+|..|.. ...-.+++++|.++++++- +.+ . + .. -+++ .|.+ .
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~--------~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y~-----~ 65 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA--------LGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDYD-----D 65 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCHH-----H
Confidence 47899999999999998851 1223479999999876432 222 1 1 12 2332 3333 4
Q ss_pred CCCCcEEEEEcCC------H-------HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHcC--CCeEEcC-
Q 006034 475 ITSPKAVMIMYTD------K-------KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAG--ATDAILE- 531 (663)
Q Consensus 475 i~~a~~vv~~~~d------d-------~~n~~~----~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~G--ad~vi~p- 531 (663)
.++||.||++.+. + ..|..+ +..+++.+|+. ++..+.||-+.- .. +..| -.+|+-.
T Consensus 66 ~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~-i~ivvsNPvDv~t~~~~k~sg~p~~rviG~g 144 (307)
T cd05290 66 CADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEA-VIILITNPLDIAVYIAATEFDYPANKVIGTG 144 (307)
T ss_pred hCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEecCcHHHHHHHHHHHhCcChhheeccc
Confidence 5788988887653 1 345543 44566667874 566666664432 22 3334 3345555
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 ~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
..+-+.++-..+-+.+++++..++
T Consensus 145 t~LDs~R~~~~la~~l~v~~~~V~ 168 (307)
T cd05290 145 TMLDTARLRRIVADKYGVDPKNVT 168 (307)
T ss_pred chHHHHHHHHHHHHHhCCCcccEE
Confidence 455566777777777777775544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.8 Score=40.32 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=53.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCCh------------------HHHHH----HHh--cC--C
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVKE----SRK--LG--F 457 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~------------------~~~~~----~~~--~~--~ 457 (663)
+|.|+|.|-+|..+++.|. ..|.. ++++|.|. .+++. +++ .. .
T Consensus 1 ~VlViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i 70 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA----------RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKI 70 (174)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEE
Confidence 5899999999999999997 67774 99999986 22222 222 12 2
Q ss_pred CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q 006034 458 PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 458 ~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~ 501 (663)
..+..+.+++ .+. .-++++|.||.++++.+.-..+...+.+.
T Consensus 71 ~~~~~~~~~~-~~~-~~l~~~DlVi~~~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 71 EAINIKIDEN-NLE-GLFGDCDIVVEAFDNAETKAMLAESLLGN 112 (174)
T ss_pred EEEEeecChh-hHH-HHhcCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 2233343332 222 23568898888877765544455555555
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.67 Score=46.71 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=51.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHH----Hhc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKES----RKL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~----~~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++ +.+.+ .+. ....+.+|.+|++.++++
T Consensus 7 k~vlItGasggiG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILA----------GAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 56889996 899999999997 78999999888653 33322 222 356788999999876532
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 77 ~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 77 TAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHhCCCCcEEEECC
Confidence 223567766554
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.79 Score=46.99 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=50.9
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cC----CCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LG----FPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~----~~vi~GD~~~~~~L~~ 472 (663)
..++++|-|. +-+|+.+|+.|. ++|++++++-+++++.+.+.+ +. ..++.-|.+|++.+++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA----------~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~ 73 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLA----------RRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALER 73 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHH
Confidence 4568899997 889999999998 899999999999999877764 11 3678899999887765
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.5 Score=44.04 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=68.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHH--HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~--~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|.|++|+..+..+.+ .++.+++ +.|.|+++ .+..++.|....+.| -++.+++ .+.|.|
T Consensus 3 rVAIIG~G~IG~~h~~~ll~---------~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~--~e~ll~~---~dIDaV 68 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLR---------SEHLEMVAMVGIDPESDGLARARELGVKTSAEG--VDGLLAN---PDIDIV 68 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHh---------CCCcEEEEEEeCCcccHHHHHHHHCCCCEEECC--HHHHhcC---CCCCEE
Confidence 58999999999988777652 5566766 46888875 344555777766543 2344443 478999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEe--------cChhhHHHH-HHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARA--------QDMMHLLDL-KKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~--------~~~~~~~~l-~~~Gad~vi~p~~ 533 (663)
+.+|++.. -...+..+.+.+. +++... .-+-+.+.. ...+.+.+.+|..
T Consensus 69 ~iaTp~~~-H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~ 126 (285)
T TIGR03215 69 FDATSAKA-HARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQ 126 (285)
T ss_pred EECCCcHH-HHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcH
Confidence 99999863 3445556666653 343211 111222222 3345677888874
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.91 Score=53.04 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=60.1
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|.| .|-+|+.+++.|. ++|++|+++|++++.. ...+..++.+|.+|+. ++++ +.++|.|+-
T Consensus 2 kILVTGAaGFIGs~La~~Ll----------~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~a-l~~~D~VIH 66 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLI----------AAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQEL-AGEADAVIH 66 (699)
T ss_pred EEEEECCCCHHHHHHHHHHH----------hCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHH-hcCCCEEEE
Confidence 588999 5999999999997 7899999999876542 2346789999999986 4443 456888877
Q ss_pred EcCC-----HHHHHH----HHHHHHHhCC
Q 006034 484 MYTD-----KKRTIE----AVQRLRLAFP 503 (663)
Q Consensus 484 ~~~d-----d~~n~~----~~~~~r~~~~ 503 (663)
+... ...|+. +...+++.+.
T Consensus 67 LAa~~~~~~~~vNv~Gt~nLleAA~~~Gv 95 (699)
T PRK12320 67 LAPVDTSAPGGVGITGLAHVANAAARAGA 95 (699)
T ss_pred cCccCccchhhHHHHHHHHHHHHHHHcCC
Confidence 6642 224544 3344566553
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.89 E-value=3.8 Score=42.11 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=47.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHH-hcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++.++|+|++|+.++.-|. +.+ .++.+.++++++.+.+. +.+... .+|.+.. ++++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~----------~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~----~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLL----------KSGALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEA----VEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHH----------hcCCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHH----HhhC
Confidence 36899999999999999997 444 68999999999987444 455442 3333222 4578
Q ss_pred cEEEEEcCC
Q 006034 479 KAVMIMYTD 487 (663)
Q Consensus 479 ~~vv~~~~d 487 (663)
|.++.+..-
T Consensus 64 dvv~LavKP 72 (266)
T COG0345 64 DVVFLAVKP 72 (266)
T ss_pred CEEEEEeCh
Confidence 877777654
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.46 Score=54.67 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh---------------------HHHHHHHhcCCCE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---------------------SVVKESRKLGFPI 459 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~---------------------~~~~~~~~~~~~v 459 (663)
+..++|+|+|.|..|...+..|. ..|++|+++|.++ ++.+.+.+.|..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~----------~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~ 204 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLR----------RMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEV 204 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEE
Confidence 35678999999999999999997 7899999999642 3455566777766
Q ss_pred EEecCC--C--HHHHHhcCCCCCcEEEEEcCCH
Q 006034 460 LYGDAS--R--PAVLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 460 i~GD~~--~--~~~L~~a~i~~a~~vv~~~~dd 488 (663)
..+... | .+.+. ..+|.++.+++..
T Consensus 205 ~~~~~~~~~~~~~~~~----~~~D~Vi~AtG~~ 233 (564)
T PRK12771 205 RLGVRVGEDITLEQLE----GEFDAVFVAIGAQ 233 (564)
T ss_pred EeCCEECCcCCHHHHH----hhCCEEEEeeCCC
Confidence 655322 1 22222 2579999998864
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=4.3 Score=39.70 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=56.1
Q ss_pred CCCcEEEEcCCcchHH---HHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHH
Q 006034 402 GSEPVVIVGFGQMGQV---LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~---la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L 470 (663)
..++++-+|.|. |.. +++.+ ..+.+|+.+|.+++..+.+++ . ...++.||..+ .+
T Consensus 40 ~~~~vlDlG~Gt-G~~s~~~a~~~-----------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~--~l 105 (198)
T PRK00377 40 KGDMILDIGCGT-GSVTVEASLLV-----------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE--IL 105 (198)
T ss_pred CcCEEEEeCCcC-CHHHHHHHHHh-----------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh--hH
Confidence 456899999877 543 33333 345689999999998876542 2 24567788754 34
Q ss_pred HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 471 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.+. -+++|.+++..+.++..-.+-...+.+.|+-+++.-
T Consensus 106 ~~~-~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 106 FTI-NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred hhc-CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 332 147898877544322222233444556776555543
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.55 Score=50.44 Aligned_cols=94 Identities=18% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|++.|++.+...... ......+.......+.|.+ =+.+
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~----------afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~ 226 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLR----------PFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGE 226 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHh----------hCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhh
Confidence 3467999999999999999997 88999999998643211110 0000011000001122222 2457
Q ss_pred CcEEEEEcCCHH--HHHHHHHHHHHhCCCCc
Q 006034 478 PKAVMIMYTDKK--RTIEAVQRLRLAFPAIP 506 (663)
Q Consensus 478 a~~vv~~~~dd~--~n~~~~~~~r~~~~~~~ 506 (663)
+|.|+...+..+ .++.-......+.|+..
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~ 257 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGAL 257 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeE
Confidence 898888887543 34444455666666633
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.6 Score=41.36 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=59.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|+|+|.|.+|..+++.|. ..|. +++++|.|.=.... .+.++++. +..+.+
T Consensus 20 ~~s~VlIiG~gglG~evak~La----------~~GVg~i~lvD~d~ve~sn---L~rqfl~~---------~~diG~--- 74 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLV----------LSGIGSLTILDDRTVTEED---LGAQFLIP---------AEDLGQ--- 74 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHH----------HcCCCEEEEEECCcccHhh---CCCCcccc---------HHHcCc---
Confidence 3568999999999999999997 6777 48899988533221 12222221 111111
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
.....++..++++||++++-+...+. ...+.+ .+.|.|++..
T Consensus 75 --------~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~--~~~dvVi~~~ 118 (197)
T cd01492 75 --------NRAEASLERLRALNPRVKVSVDTDDISEKPEEFF--SQFDVVVATE 118 (197)
T ss_pred --------hHHHHHHHHHHHHCCCCEEEEEecCccccHHHHH--hCCCEEEECC
Confidence 12234577889999998876654332 222333 3578888654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.2 Score=46.89 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=73.9
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHH----HHhc----CCC-EEEecCCCHHHHHhcCC
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKE----SRKL----GFP-ILYGDASRPAVLLSAGI 475 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~----~~~~----~~~-vi~GD~~~~~~L~~a~i 475 (663)
|.|+|.|.+|..++..+. ..+. +++++|.|+++.+. +.+. +.. -+... +| ++ .+
T Consensus 1 I~IIGaG~vG~~ia~~la----------~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t-~d---~~--~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA----------LKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGT-ND---YE--DI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHH----------hCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEc-CC---HH--Hh
Confidence 469999999999999886 4544 99999999876421 1111 111 22211 22 22 26
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCCC--eEEcCc-hH
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILEN-AE 534 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Gad--~vi~p~-~~ 534 (663)
.+||.+|.+.+. | ..|.. ++..+++..|+. ++..+.||.+.- .+ +..|.+ +++--- ..
T Consensus 65 ~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~-~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~l 143 (300)
T cd01339 65 AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNA-IVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVL 143 (300)
T ss_pred CCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHHhCCCHHHEEEecchH
Confidence 899988886631 1 23444 344456667773 444555554332 23 333443 454433 33
Q ss_pred HHHHHHHHHHHhcCCCHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~ 554 (663)
-..++-..+-+.+++++..+
T Consensus 144 ds~r~~~~la~~l~v~~~~v 163 (300)
T cd01339 144 DSARFRYFIAEELGVSVKDV 163 (300)
T ss_pred HHHHHHHHHHHHhCCCccce
Confidence 34455555556666666443
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.8 Score=47.02 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC-------------------hHHHHHHHh------c
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN-------------------PSVVKESRK------L 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d-------------------~~~~~~~~~------~ 455 (663)
...+|+|+|.|-.|..+++.|. ..|. +++++|.| ..+++.+.+ .
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La----------~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLA----------AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 3568999999999999999997 5666 79999998 334444332 1
Q ss_pred CCCE--EEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 456 GFPI--LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 456 ~~~v--i~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
...+ +....++. .+.+ -++++|.||.++++.+.-..+...+++.+
T Consensus 204 ~v~v~~~~~~~~~~-~~~~-~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ 250 (376)
T PRK08762 204 DVQVEAVQERVTSD-NVEA-LLQDVDVVVDGADNFPTRYLLNDACVKLG 250 (376)
T ss_pred CCEEEEEeccCChH-HHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2322 23333332 2222 14678989888888776667777788876
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.98 Score=48.83 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|.|+|. |.+|..+++.|++ ..+++|..+|.+.+. .+++ +..+++||.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~---------~~~~~V~g~D~~d~~---------------~~~~----~~~v~~aDl 54 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRT---------RMQLEVIGHDPADPG---------------SLDP----ATLLQRADV 54 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh---------cCCCEEEEEcCCccc---------------cCCH----HHHhcCCCE
Confidence 3568999999 9999999999982 358889999875211 1121 123567888
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
|+++++-+.
T Consensus 55 VilavPv~~ 63 (370)
T PRK08818 55 LIFSAPIRH 63 (370)
T ss_pred EEEeCCHHH
Confidence 888887643
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.69 Score=47.27 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. +.+|+.+++.|. +.|++|++.++++++.+...+ . ....+.+|.+|++.++++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~----------~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYA----------KAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46788876 789999999998 789999999999887655432 2 356789999999877553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 81 ~~~~~~~id~li~~a 95 (265)
T PRK07097 81 IEKEVGVIDILVNNA 95 (265)
T ss_pred HHHhCCCCCEEEECC
Confidence 224567776554
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.3 Score=47.44 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC---ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL---NPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~---d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|.|.|.+|...++.++ ..|.+|+++++ ++++.+.+++.|...+ |..+++.-+...-..+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak----------~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLR----------LRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCC
Confidence 3468999999999999999887 67889999997 6888888888776654 3333322111112468
Q ss_pred cEEEEEcCCHH
Q 006034 479 KAVMIMYTDKK 489 (663)
Q Consensus 479 ~~vv~~~~dd~ 489 (663)
|.++-+++.+.
T Consensus 240 d~vid~~g~~~ 250 (355)
T cd08230 240 DLIIEATGVPP 250 (355)
T ss_pred CEEEECcCCHH
Confidence 99988888653
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.74 E-value=22 Score=38.29 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=57.1
Q ss_pred chhhhhHHHHHHHhccccChhHHhhhHHHHHHH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHH-hhhhhhhHHHHH
Q 006034 266 PFRGLLLGLFFVTTGSSIDIELLFREWPNVLAL---LAGLIIIKTLIISAIGPRVGLTLQESVRIGL-LLSQGGEFAFVV 341 (663)
Q Consensus 266 ~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~---~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~-~l~~~G~~~lvl 341 (663)
++++.|+-+||..+|+.-++..+.+.+.....+ ........-......+...|.++.-.+..|- .|.-.=..+...
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 568899999999999999999997764332221 1222233333334455677888888877743 333333455566
Q ss_pred HHHHHHcCCCchhh
Q 006034 342 FSLANRLGVLPLEL 355 (663)
Q Consensus 342 a~~a~~~g~i~~~~ 355 (663)
+....+.|.-+...
T Consensus 146 ~~~f~~~G~~~A~~ 159 (404)
T COG0786 146 GPTFEDLGAEGATE 159 (404)
T ss_pred HHHHHhcCCcchHH
Confidence 66777777665544
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.95 Score=45.01 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=51.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...+++|+|+|+.|+.+++.+.. ...|++++ ++|.|+++..... .+.++ .+..+.+-+- .-.+.|.
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~--------~~~g~~ivgv~D~d~~~~~~~i-~g~~v--~~~~~l~~li--~~~~iD~ 149 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGF--------EKRGFKIVAAFDVDPEKIGTKI-GGIPV--YHIDELEEVV--KENDIEI 149 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhc--------ccCCcEEEEEEECChhhcCCEe-CCeEE--cCHHHHHHHH--HHCCCCE
Confidence 34689999999999999986431 14567766 5788887653221 12332 2222222221 1236888
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
++++++++... .++..+.+.+
T Consensus 150 ViIa~P~~~~~-~i~~~l~~~G 170 (213)
T PRK05472 150 GILTVPAEAAQ-EVADRLVEAG 170 (213)
T ss_pred EEEeCCchhHH-HHHHHHHHcC
Confidence 88898876543 3344455554
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.38 Score=56.37 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. ..|++|+++|++++ ..+.+.+.|..+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~----------~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLA----------RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEE
Confidence 4568999999999999999998 78999999998753 2344555666655
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+.-...+ .+++. ..++|.++++++.
T Consensus 396 ~~~~v~~~i~~~~~-~~~~DavilAtGa 422 (654)
T PRK12769 396 LNCEVGKDISLESL-LEDYDAVFVGVGT 422 (654)
T ss_pred CCCEeCCcCCHHHH-HhcCCEEEEeCCC
Confidence 43211111 11111 1368999998875
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.3 Score=47.71 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=56.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHH---HHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPA---VLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~---~L~~a~i~~a 478 (663)
++++|+|.|++|...++..+ ..| .+|+++|.+++|.+.+++ .+...+.-+..+.. +++.-+=..+
T Consensus 170 ~~V~V~GaGpIGLla~~~a~----------~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAK----------LLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 38999999999999888776 444 678888999999999988 66666665544321 2233333579
Q ss_pred cEEEEEcCCHH
Q 006034 479 KAVMIMYTDKK 489 (663)
Q Consensus 479 ~~vv~~~~dd~ 489 (663)
|.++-+++...
T Consensus 240 D~vie~~G~~~ 250 (350)
T COG1063 240 DVVIEAVGSPP 250 (350)
T ss_pred CEEEECCCCHH
Confidence 99999999543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.67 Score=46.77 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=52.1
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc----
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a---- 473 (663)
.++|.| .|.+|+.+++.|. ++|++|++++++++..+.+.+ .....+.+|.+|++-++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALA----------AAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred EEEEcCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 578888 4899999999997 789999999999887665543 2366789999999844221
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
.....|.++-..
T Consensus 73 ~~~~~~~d~vi~~a 86 (255)
T TIGR01963 73 AAEFGGLDILVNNA 86 (255)
T ss_pred HHhcCCCCEEEECC
Confidence 134567665443
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.67 Score=47.17 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ ....++..|.+|++-++++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~----------~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFA----------REGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 46788876 789999999998 789999999999887665442 1245788999999876543
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~~~g~id~li~~a 94 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHHHhCCCcEEEECC
Confidence 123567776544
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=89.53 E-value=2 Score=47.56 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=50.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH----------Hhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL----------LSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L----------~~a 473 (663)
-+|-|+|.|.+|..+|..|. + +++|+++|.|+++++.+.+ |...+.- ...++.. .+
T Consensus 7 mkI~vIGlGyvGlpmA~~la----------~-~~~V~g~D~~~~~ve~l~~-G~~~~~e-~~~~~l~~~g~l~~t~~~~- 72 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG----------K-SRQVVGFDVNKKRILELKN-GVDVNLE-TTEEELREARYLKFTSEIE- 72 (425)
T ss_pred CeEEEECcCcchHHHHHHHh----------c-CCEEEEEeCCHHHHHHHHC-cCCCCCC-CCHHHHHhhCCeeEEeCHH-
Confidence 35899999999999999996 4 6999999999999999983 3322111 1111110 11
Q ss_pred CCCCCcEEEEEcCCH
Q 006034 474 GITSPKAVMIMYTDK 488 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd 488 (663)
.++++|.++++.+++
T Consensus 73 ~~~~advvii~Vptp 87 (425)
T PRK15182 73 KIKECNFYIITVPTP 87 (425)
T ss_pred HHcCCCEEEEEcCCC
Confidence 267899999988865
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.76 Score=46.28 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=52.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHhc--CCCEEEecCCCHHHHHhc-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~~--~~~vi~GD~~~~~~L~~a----- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++. ..+...+. ...++.+|.+|++.++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLA----------EAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 56888887 789999999998 78999999998763 22333332 356889999999877521
Q ss_pred -CCCCCcEEEEEc
Q 006034 474 -GITSPKAVMIMY 485 (663)
Q Consensus 474 -~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~~~~~d~li~~a 88 (248)
T TIGR01832 76 EEFGHIDILVNNA 88 (248)
T ss_pred HHcCCCCEEEECC
Confidence 234678777554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=20 Score=40.23 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCE-EEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPI-LYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~v-i~GD~~~~~~L~~a~i~~a~~ 480 (663)
+++++|+|.|+-|+.+++.|++ ..+.|++++ .+|.|+.. +.++ +.|+..|- .+-..-.+.|.
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~-------~~~~g~~vVGfiDdd~~~-------g~~VpvlG~~~dL--~~~v~~~~Ide 206 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRN-------EPWLGFEVVGVYHDPKPG-------GVSNDWAGNLQQL--VEDAKAGKIHN 206 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhc-------CccCCeEEEEEEeCCccc-------cCCCCcCCCHHHH--HHHHHhCCCCE
Confidence 4679999999999999999962 002355544 46655421 2222 34544332 22223356788
Q ss_pred EEEEcCCHH--HHHHHHHHHHHhCCCCcEEEEec
Q 006034 481 VMIMYTDKK--RTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 481 vv~~~~dd~--~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
|+++.+..+ .-..+...+++.+.+++++-...
T Consensus 207 ViIAip~~~~~~l~ell~~~~~~~v~V~ivP~l~ 240 (463)
T PRK10124 207 VYIAMSMCDGARVKKLVRQLADTTCSVLLIPDVF 240 (463)
T ss_pred EEEeCCCcchHHHHHHHHHHHHcCCeEEEecchh
Confidence 888887643 33345566777766655554443
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=89.48 E-value=1 Score=50.31 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---------------------HHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---------------------~~~~~~~~~~vi 460 (663)
..++++|+|.|..|...|..|. +.|++|+++|.++.. .+.+.+.+..+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~ 201 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELA----------KAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFR 201 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999998 789999999975321 123445677777
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+...+.+ .+++ ...++|.++++|+.
T Consensus 202 ~~~~v~~~v~~~~-~~~~yd~viiAtGa 228 (449)
T TIGR01316 202 MNFLVGKTATLEE-LFSQYDAVFIGTGA 228 (449)
T ss_pred eCCccCCcCCHHH-HHhhCCEEEEeCCC
Confidence 77543322 1221 12368999999985
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.67 Score=46.83 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=53.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcC--CCEEEecCCCHHHHHhc----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~--~~vi~GD~~~~~~L~~a---- 473 (663)
.++|.|. |.+|+.+++.|. +.|.+++++++++++.+... +.+ ...+.+|.+|++-++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLA----------KDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred EEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5788885 899999999997 78999999999987654443 223 56788999999877553
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
.....|.+|-..
T Consensus 72 ~~~~~~id~vi~~a 85 (254)
T TIGR02415 72 AEKFGGFDVMVNNA 85 (254)
T ss_pred HHHcCCCCEEEECC
Confidence 223567776654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=3 Score=42.85 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=56.8
Q ss_pred ccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH-----HHHhc
Q 006034 399 NYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA-----VLLSA 473 (663)
Q Consensus 399 ~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~-----~L~~a 473 (663)
.++..++|+|+|+|.-| .+-+.|+ .+ .+|+.+|.|++.++..++. .+.+.+.-.||. -+++.
T Consensus 69 ~h~~pk~VLIiGGGDGg-~~REvLk----------h~-~~v~mVeID~~Vv~~~k~~-lP~~~~~~~DpRv~l~~~~~~~ 135 (262)
T PRK00536 69 TKKELKEVLIVDGFDLE-LAHQLFK----------YD-THVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQLLDL 135 (262)
T ss_pred hCCCCCeEEEEcCCchH-HHHHHHC----------cC-CeeEEEECCHHHHHHHHHH-CHHHHHhhcCCCEEEeehhhhc
Confidence 45677899999999955 3444554 23 3999999999998877762 111111111111 13344
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.-++.|++|+-...+.+... ...|.++|+--+++.
T Consensus 136 ~~~~fDVIIvDs~~~~~fy~--~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 136 DIKKYDLIICLQEPDIHKID--GLKRMLKEDGVFISV 170 (262)
T ss_pred cCCcCCEEEEcCCCChHHHH--HHHHhcCCCcEEEEC
Confidence 44689988877555554443 234556666333333
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.8 Score=50.97 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--HHHHHh--cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRK--LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~~~~~~--~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.+++.|+|.|..|..+++.|. +.|++|++.|.++.. .+.+.+ .|..+..|+..+ +.+ +++
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~-~~~-----~~~ 68 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLR----------KNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKD-ALD-----NGF 68 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCH-HHH-----hCC
Confidence 357999999999999999997 899999999987653 334444 366666665432 222 467
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
|.||....=+..|- ....||+.+
T Consensus 69 d~vv~spgi~~~~p-~~~~a~~~~ 91 (445)
T PRK04308 69 DILALSPGISERQP-DIEAFKQNG 91 (445)
T ss_pred CEEEECCCCCCCCH-HHHHHHHcC
Confidence 88877666554443 344555543
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.72 Score=49.40 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=52.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-----hcCCCEEEecCCCHHHHHhcCC-C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLGFPILYGDASRPAVLLSAGI-T 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-----~~~~~vi~GD~~~~~~L~~a~i-~ 476 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++...... ......+.+|.+|++.++++=- .
T Consensus 5 k~ilItGatG~IG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLL----------ELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred CEEEEECCCChhHHHHHHHHH----------HCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence 57899986 889999999998 78999999998776533221 1235678999999987765311 1
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.+|-+.
T Consensus 75 ~~d~vih~A 83 (349)
T TIGR02622 75 KPEIVFHLA 83 (349)
T ss_pred CCCEEEECC
Confidence 457666444
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.43 Score=51.81 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=52.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc-CCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a-~i~~a~~vv~ 483 (663)
++.|+|.|..|+.+++.+. +.|++|+++|.+++..... .....+.+|.+|++.+.+. .-.+.|.++.
T Consensus 1 kililG~g~~~~~l~~aa~----------~~G~~v~~~d~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQ----------RLGVEVIAVDRYANAPAMQ--VAHRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCchhh--hCceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 4789999999999999997 7899999999998653221 1234567888898877553 3346887765
Q ss_pred EcCC
Q 006034 484 MYTD 487 (663)
Q Consensus 484 ~~~d 487 (663)
..++
T Consensus 69 ~~e~ 72 (380)
T TIGR01142 69 EIEA 72 (380)
T ss_pred ccCc
Confidence 4443
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.74 Score=51.42 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|+-|+..++.|. + |.+|++.|.+++......+.....+.|+-. ++.+ +++|.||
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~----------~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~d~vV 68 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ----------N-KYDVIVYDDLKANRDIFEELYSKNAIAALS-DSRW-----QNLDKIV 68 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh----------C-CCEEEEECCCCCchHHHHhhhcCceeccCC-hhHh-----hCCCEEE
Confidence 468999999999999999995 4 999999996654333332211122344322 2223 4678666
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
...+=+..| -....+|+.+ ++++.
T Consensus 69 ~SPgI~~~~-p~~~~a~~~g--i~v~~ 92 (454)
T PRK01368 69 LSPGIPLTH-EIVKIAKNFN--IPITS 92 (454)
T ss_pred ECCCCCCCC-HHHHHHHHCC--Cceec
Confidence 555433333 3345556554 34543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.73 Score=51.50 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---------------------HHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---------------------~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. +.|++|+++|+++.. .+.+.+.+..+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~----------~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~ 208 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLA----------RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIR 208 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------hCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 4568999999999999999997 789999999976421 223445677776
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+...... .+++.. .++|.+|++|+.
T Consensus 209 ~~~~v~~~v~~~~~~-~~~d~vvlAtGa 235 (457)
T PRK11749 209 TNTEVGRDITLDELR-AGYDAVFIGTGA 235 (457)
T ss_pred eCCEECCccCHHHHH-hhCCEEEEccCC
Confidence 66542221 122222 568999999986
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.77 Score=47.07 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=52.9
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a---- 473 (663)
+++|.|. |.+|+.+++.|. +.|++|+++++++++.+...+ ....++.+|.+|++.++++
T Consensus 2 ~vlVtGasggIG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWA----------REGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred EEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 5777775 899999999998 789999999999887654332 2356688999998876542
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 72 ~~~~~~id~lI~~ag 86 (270)
T PRK05650 72 EEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHcCCCCEEEECCC
Confidence 2245677766543
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.73 Score=46.70 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=53.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hc--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++.++++++.+... +. ....+.+|.+|++.++++
T Consensus 10 k~~lItGas~giG~~ia~~L~----------~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLA----------EYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 46788775 789999999998 78999999999987755443 22 245678999999877643
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 80 ~~~~~~~id~vi~~ag 95 (254)
T PRK08085 80 IEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1235677766553
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.38 Score=52.43 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=42.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
-.|+|+|.|..|..+|-.|. +.|++|+++|+++.........+...+.-.+...++|++.|+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La----------~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~ 69 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALA----------DAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVW 69 (392)
T ss_pred CCEEEECcCHHHHHHHHHHh----------cCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCch
Confidence 46999999999999999997 7899999999986421111111122333334445666666653
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.36 Score=59.68 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCc--chH---------HHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHH
Q 006034 401 EGSEPVVIVGFGQ--MGQ---------VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~--~g~---------~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~ 469 (663)
..+++|+|+|.|. +|+ ++++.|+ +.|+++++|+.||+.+..-.+.....++-+.+-+++
T Consensus 572 ~~~kkvlilG~G~~~igq~iefd~~~v~~~~alr----------~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~v 641 (1102)
T PLN02735 572 TNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQ----------DAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDV 641 (1102)
T ss_pred CCCceEEEeCccccccCcccccceeHHHHHHHHH----------HcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHH
Confidence 3567899999997 775 3568997 899999999999998653222233444445666777
Q ss_pred HHhcCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 006034 470 LLSAGITSPKAVMIMYTDKKRTIEAVQRLR 499 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r 499 (663)
++-+.-+++|.|+...+.+..+..+....+
T Consensus 642 l~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~ 671 (1102)
T PLN02735 642 LNVIDLERPDGIIVQFGGQTPLKLALPIQK 671 (1102)
T ss_pred HHHHHHhCCCEEEECCCchHHHHHHHHHHH
Confidence 887888899999888887665444444333
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.67 Score=50.95 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|.+|+.+++.|. +.| .++.+..+++++++.+.+. +. +....-+-+. .-+.++|.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~----------~~g~~~I~V~nRt~~ra~~La~~~~~----~~~~~~~~l~-~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVT----------ALAPKQIMLANRTIEKAQKITSAFRN----ASAHYLSELP-QLIKKADI 245 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHHhcC----CeEecHHHHH-HHhccCCE
Confidence 457999999999999999997 566 4799999999999888763 21 1122222232 23678999
Q ss_pred EEEEcCCHHH
Q 006034 481 VMIMYTDKKR 490 (663)
Q Consensus 481 vv~~~~dd~~ 490 (663)
||.+|+.+..
T Consensus 246 VI~aT~a~~~ 255 (414)
T PRK13940 246 IIAAVNVLEY 255 (414)
T ss_pred EEECcCCCCe
Confidence 9999988644
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.99 Score=45.80 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHHhcCCCEEEecCCCHHHHHhc------CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i 475 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++..+ ++..+.+.+.+..++..|.+|++-++++ ..
T Consensus 8 k~~lItGas~gIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFL----------REGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56888875 899999999998 789999888654 4455566655678899999999877653 22
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.+|.+.
T Consensus 78 ~~id~li~~a 87 (255)
T PRK06463 78 GRVDVLVNNA 87 (255)
T ss_pred CCCCEEEECC
Confidence 4667776544
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.63 Score=47.14 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=51.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++. ........++.+|.+|++.++++ ...
T Consensus 7 k~~lItGas~gIG~~la~~l~----------~~g~~v~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFL----------AAGATVVVCGRRAPE--TVDGRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCChhh--hhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56788876 689999999997 789999999998875 12223467889999999876543 124
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.+|-..
T Consensus 75 ~id~vi~~a 83 (252)
T PRK07856 75 RLDVLVNNA 83 (252)
T ss_pred CCCEEEECC
Confidence 568776643
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.95 Score=45.18 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=52.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHHh-cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRK-LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
+.++|.|. |.+|+.+++.|. ++|++|++... +++..+.+.+ .+...+.+|.+|++.+.++ ...+.
T Consensus 7 k~vlItGasggIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFV----------TDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 56888886 899999999997 78999888765 5666665543 4677888999998866542 22356
Q ss_pred cEEEEEc
Q 006034 479 KAVMIMY 485 (663)
Q Consensus 479 ~~vv~~~ 485 (663)
|.+|-..
T Consensus 77 d~li~~a 83 (237)
T PRK12742 77 DILVVNA 83 (237)
T ss_pred cEEEECC
Confidence 7666553
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.89 Score=51.43 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=57.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHhc--CCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.+++.|+|.|..|..+|+.|. +.|++|.+.|.++. ..+.+.+. +..+..|+.. ++.+ +++
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~-~~~~-----~~~ 70 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCA----------RHGARLRVADTREAPPNLAALRAELPDAEFVGGPFD-PALL-----DGV 70 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHH----------HCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCc-hhHh-----cCC
Confidence 357999999999999999997 89999999997653 23445554 4445444332 4444 357
Q ss_pred cEEEEEcCCHHHH---HHHHHHHHHhCCCCcEEEEec
Q 006034 479 KAVMIMYTDKKRT---IEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 479 ~~vv~~~~dd~~n---~~~~~~~r~~~~~~~iia~~~ 512 (663)
|.||+...=...| .-....||+.+ ++++.+..
T Consensus 71 d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~~~~e 105 (498)
T PRK02006 71 DLVALSPGLSPLEAALAPLVAAARERG--IPVWGEIE 105 (498)
T ss_pred CEEEECCCCCCcccccCHHHHHHHHCC--CcEEEHHH
Confidence 8776653322222 23455566654 45665433
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.83 Score=47.62 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=69.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|+|.|..|+.++..|. +.|. ++.++|+|+++++.+.+. ......-...+ + +. ..++++
T Consensus 127 ~k~vlIlGaGGaaraia~aL~----------~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~-~-~~-~~~~~a 193 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALL----------TLGVERLTIFDVDPARAAALADELNARFPAARATAGS-D-LA-AALAAA 193 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc-c-hH-hhhCCC
Confidence 468999999999999999997 5676 799999999998887652 11111111111 1 11 134679
Q ss_pred cEEEEEcCCHHHH-HHHHHHHHHhCCCCcEEEEecChhhHH---HHHHcCCCeEEcCchHHHHHH
Q 006034 479 KAVMIMYTDKKRT-IEAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGATDAILENAETSLQL 539 (663)
Q Consensus 479 ~~vv~~~~dd~~n-~~~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Gad~vi~p~~~~~~~l 539 (663)
|.+|-+|+-...+ -..-.-...+.+...++=.+.++...+ ..++.|+ .+++-....-.|-
T Consensus 194 DiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~-~~~~G~~ML~~Qa 257 (284)
T PRK12549 194 DGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGC-RTLDGGGMAVFQA 257 (284)
T ss_pred CEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCC-eEecCHHHHHHHH
Confidence 9888876531100 000001122334433444555555444 4455677 4666654333333
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.71 Score=49.00 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=75.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH-HHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~-~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.|-|+|.|+.|+.++..=. ..|++|.+.|.+++.- .... ..++..+.+|++.+++. ++++|++
T Consensus 3 tvgIlGGGQLgrMm~~aa~----------~lG~~v~vLdp~~~~PA~~va---~~~i~~~~dD~~al~el-a~~~DVi-- 66 (375)
T COG0026 3 TVGILGGGQLGRMMALAAA----------RLGIKVIVLDPDADAPAAQVA---DRVIVAAYDDPEALREL-AAKCDVI-- 66 (375)
T ss_pred eEEEEcCcHHHHHHHHHHH----------hcCCEEEEecCCCCCchhhcc---cceeecCCCCHHHHHHH-HhhCCEE--
Confidence 5889999999999999886 7899999999988753 2222 45777888899999986 4688844
Q ss_pred EcCCHHHHHHHHHHHH---HhCCCCcEEEEecCh-hhHHHHHHcCCC
Q 006034 484 MYTDKKRTIEAVQRLR---LAFPAIPIYARAQDM-MHLLDLKKAGAT 526 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r---~~~~~~~iia~~~~~-~~~~~l~~~Gad 526 (663)
+.+-...+......+. ...|+...+...+|. ...+.|+++|+-
T Consensus 67 T~EfE~V~~~aL~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~ 113 (375)
T COG0026 67 TYEFENVPAEALEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLP 113 (375)
T ss_pred EEeeccCCHHHHHHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCC
Confidence 5554333333333333 345666666666665 455677888875
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.9 Score=51.06 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=35.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
-++|.|+|.|.+|..+|..+. ..|++|+++|.|++..+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~ 352 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSA----------SKGVPVIMKDINQKALDLG 352 (715)
T ss_pred cceEEEECCchhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 468999999999999999997 7899999999999986543
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.79 Score=46.35 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=51.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+.+ . ....+..|.+|.+-.+++
T Consensus 9 k~vlItGas~gIG~~l~~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLA----------QQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 56788874 788999999998 789999999999887655443 2 245678899988865432
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 79 ~~~~~~~id~li~~a 93 (252)
T PRK07035 79 IRERHGRLDILVNNA 93 (252)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567666433
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.87 Score=45.66 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=51.4
Q ss_pred CcEEEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|.++ +|+.++++|. ++|.+|+++++|+++.++..+ .+ ...+..|.+|++-.+++
T Consensus 6 k~~lVtGas~GIG~aia~~la----------~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFA----------RLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred eEEEEECCccHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 5788888755 9999999998 789999999999988765543 22 33456788888766532
Q ss_pred ---CCC-CCcEEEEEc
Q 006034 474 ---GIT-SPKAVMIMY 485 (663)
Q Consensus 474 ---~i~-~a~~vv~~~ 485 (663)
... +-|.+|...
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 123 567666654
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.6 Score=48.29 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=68.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CC-CEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GF-PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~-~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|+|.|..|+.++..|. +.|.++.+.++++++.+.+.+. .. ....-+ +.+....++|
T Consensus 117 ~k~vliiGaGg~g~aia~~L~----------~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~------~~~~~~~~~D 180 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLL----------KADCNVIIANRTVSKAEELAERFQRYGEIQAFS------MDELPLHRVD 180 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhhcCceEEec------hhhhcccCcc
Confidence 457999999999999999997 6788999999999988776652 11 111111 1122346799
Q ss_pred EEEEEcCCHHH-HHH-HHHHHHHhCCCCcEEEEecCh---hhHHHHHHcCCCeEEcCch
Q 006034 480 AVMIMYTDKKR-TIE-AVQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 480 ~vv~~~~dd~~-n~~-~~~~~r~~~~~~~iia~~~~~---~~~~~l~~~Gad~vi~p~~ 533 (663)
.+|.+|+.... +.. .......+.++..++=.+.++ ...+..++.|+. +++-..
T Consensus 181 ivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~-~vdG~~ 238 (270)
T TIGR00507 181 LIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTK-TIDGLG 238 (270)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCe-eeCCHH
Confidence 99888876311 110 000122334442333333333 344566777874 666654
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=88.97 E-value=2.5 Score=44.59 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=48.8
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPA 468 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~ 468 (663)
+..++|+++|+|. |..+.+.++ .. ..+++++|.|++.++.+++ .+..++.||+.+
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk----------~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~-- 156 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIAR----------HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE-- 156 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh----------CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--
Confidence 3467899999998 443333333 33 3579999999988766554 246788888753
Q ss_pred HHHhcCCCCCcEEEEEcCC
Q 006034 469 VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~d 487 (663)
.+++..=++.|.|++-..+
T Consensus 157 ~l~~~~~~~yDvIi~D~~d 175 (308)
T PLN02366 157 FLKNAPEGTYDAIIVDSSD 175 (308)
T ss_pred HHhhccCCCCCEEEEcCCC
Confidence 3444323578988775544
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=1 Score=46.30 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=51.6
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh---HHHHHHHhc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---SVVKESRKL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~---~~~~~~~~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ -+|+.+++.|. ++|++|++.++++ +.++.+.+. ....+..|.+|++..+++
T Consensus 7 k~~lITGas~~~GIG~aia~~la----------~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHH----------HCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHH
Confidence 568899987 59999999997 7899999998874 334444432 245678999998877642
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+-|.+|-..
T Consensus 77 ~~~~~~g~iD~linnA 92 (262)
T PRK07984 77 ELGKVWPKFDGFVHSI 92 (262)
T ss_pred HHHhhcCCCCEEEECC
Confidence 234567766554
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.87 Score=55.41 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++|+|+|.|+-|...|..|. ..|++|+|+|++++ .++.+.+.|..+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~La----------r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~ 374 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLA----------VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFV 374 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEE
Confidence 4678999999999999999997 78999999998642 2344556777665
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+.....+ .+++..-.++|+|+++|+.
T Consensus 375 ~n~~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 375 KNFVVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeEEeccEEeHHHhccccCCEEEEeCCC
Confidence 54322222 2333333468999999986
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.71 Score=54.39 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=57.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a--- 473 (663)
.+.++|.|. |.+|+.+++.|. +.|.+|+++|++++..+...+. +..++.+|.+|++.++++
T Consensus 422 gk~vLVTGasggIG~~la~~L~----------~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLA----------AEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHH
Confidence 357888895 999999999997 7899999999999887665542 566889999999876542
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
.....|.+|-+.+
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1236787777665
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.97 Score=43.20 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCcc-hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQM-GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~-g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..++++|+|.|.+ |..+++.|. +.|.++.+++++.+.. . ..+.+||.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~----------~~g~~V~v~~r~~~~l---------------------~-~~l~~aDi 90 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLL----------NRNATVTVCHSKTKNL---------------------K-EHTKQADI 90 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHh----------hCCCEEEEEECCchhH---------------------H-HHHhhCCE
Confidence 4568999999996 888999997 6788899999874321 1 14567787
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
||.+++..+
T Consensus 91 VIsat~~~~ 99 (168)
T cd01080 91 VIVAVGKPG 99 (168)
T ss_pred EEEcCCCCc
Confidence 777777643
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.87 E-value=8.9 Score=38.50 Aligned_cols=129 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred cCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHH--HHHHHhcC--------------------
Q 006034 400 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSV--VKESRKLG-------------------- 456 (663)
Q Consensus 400 ~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~--~~~~~~~~-------------------- 456 (663)
++.++.++--.-|+.|+.++-.-+ ..|.|..+|-. |... +...+.+|
T Consensus 70 ek~~kgvithSSGNHaqAlalaAk----------~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~l 139 (323)
T KOG1251|consen 70 EKRAKGVITHSSGNHAQALALAAK----------ILGIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDL 139 (323)
T ss_pred hhhcCceEeecCCcHHHHHHHHHH----------hcCCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHH
Confidence 355667888889999999887654 56677555421 1111 11111222
Q ss_pred --------------CCEEEecCCC-HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC--hhhHHH
Q 006034 457 --------------FPILYGDASR-PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD--MMHLLD 519 (663)
Q Consensus 457 --------------~~vi~GD~~~-~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~--~~~~~~ 519 (663)
-.++.|.+|- .|+|++.| .-|++++..+.----.-+++.+|.+.|+++|++.... ++..+.
T Consensus 140 tee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg--~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qs 217 (323)
T KOG1251|consen 140 TEETGYYLIHPYNHPSVIAGQGTIALELLEQVG--EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQS 217 (323)
T ss_pred HHhcCcEEeCCCCCcceeeccchHHHHHHHhhC--ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHH
Confidence 3455555553 46777766 8888888888766666688999999999999997662 333444
Q ss_pred HHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 520 LKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 520 l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+.+-++-++-.|+ -+|+-+..
T Consensus 218 f~~g~I~~l~tp~-----TIADG~r~ 238 (323)
T KOG1251|consen 218 FLKGKIVHLDTPK-----TIADGVRT 238 (323)
T ss_pred HhcCCeEecCCch-----hhhhhhhh
Confidence 5555666633343 45554443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=2 Score=45.77 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=53.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHH--HHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAV--LLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~--L~~a~i~~a~ 479 (663)
.++++|.|.|.+|+..++.++ ..|. +|+++|.++++.+.+++.|...+. |..+++. +.+.. ...|
T Consensus 170 g~~VlV~G~G~vG~~aiqlak----------~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~-g~~D 237 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVK----------TLGAAEIVCADVSPRSLSLAREMGADKLV-NPQNDDLDHYKAEK-GYFD 237 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCcEEEEEeCCHHHHHHHHHcCCcEEe-cCCcccHHHHhccC-CCCC
Confidence 457999999999999999886 6777 588999999999999888865433 3333221 11111 2489
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.++-+++...
T Consensus 238 ~vid~~G~~~ 247 (343)
T PRK09880 238 VSFEVSGHPS 247 (343)
T ss_pred EEEECCCCHH
Confidence 8888888643
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.59 Score=53.20 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|.+.|+.... +...+.+.... .+ |+++ ++++|.+
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~~----~~---l~el-l~~aDvV 197 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAK----------AFGMKVLAYDPYISP-ERAEQLGVELV----DD---LDEL-LARADFI 197 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEEc----CC---HHHH-HhhCCEE
Confidence 3467999999999999999997 789999999974221 12223332211 12 2221 3577888
Q ss_pred EEEcCCHHHHHHH--HHHHHHhCCCC
Q 006034 482 MIMYTDKKRTIEA--VQRLRLAFPAI 505 (663)
Q Consensus 482 v~~~~dd~~n~~~--~~~~r~~~~~~ 505 (663)
++..+..+++..+ ......+.|..
T Consensus 198 ~l~lPlt~~T~~li~~~~l~~mk~ga 223 (525)
T TIGR01327 198 TVHTPLTPETRGLIGAEELAKMKKGV 223 (525)
T ss_pred EEccCCChhhccCcCHHHHhcCCCCe
Confidence 8877765443332 34455555553
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.95 Score=46.04 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. +.+|+.+++.|. +.|.+|+++++++++.+.+.+ ....++..|.+|++-++++
T Consensus 8 k~vlItG~~~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFA----------AEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 56788887 689999999998 789999999999887665432 1356788999998866542
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|.+.
T Consensus 78 ~~g~id~lv~~a 89 (259)
T PRK06125 78 EAGDIDILVNNA 89 (259)
T ss_pred HhCCCCEEEECC
Confidence 234677776654
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.78 E-value=5.7 Score=41.93 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=84.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHH--HHHHHhcCC-CEEEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VKESRKLGF-PILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~--~~~~~~~~~-~vi~GD~~~~~~L~~a~i~~a 478 (663)
+|.|+|. |++|..++-.|. ..+ .+++++|.+..+ +.++.+... .-+++-..+.+.. ...++|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~----------~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y--~~~~da 69 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLK----------LNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELK--KALKGA 69 (310)
T ss_pred EEEEECCCCHHHHHHHHHHH----------hCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchH--HhcCCC
Confidence 5899999 999999999886 444 579999998111 122222212 2344321121122 356899
Q ss_pred cEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH-------HHHHHcCCC--eEEcCchH
Q 006034 479 KAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL-------LDLKKAGAT--DAILENAE 534 (663)
Q Consensus 479 ~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~-------~~l~~~Gad--~vi~p~~~ 534 (663)
|.+|++.+. | +.|.. ++...++.+|+ -++..+.||.+. ...+..|-+ +|+--..+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~-a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~L 148 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPK-ALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTL 148 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeech
Confidence 988887654 1 23443 44556677888 466667777643 223444554 67766666
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~ 555 (663)
-+.++-..+-+.+++++..++
T Consensus 149 Ds~R~~~~la~~l~v~~~~V~ 169 (310)
T cd01337 149 DVVRANTFVAELLGLDPAKVN 169 (310)
T ss_pred HHHHHHHHHHHHhCcCHHHEE
Confidence 666777788888888875544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.8 Score=46.52 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ .....+.+|.+|++-++++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFL----------GLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 46777775 799999999997 789999999999988665543 1245678999998755331
Q ss_pred -----CCCCCcEEEEEcC
Q 006034 474 -----GITSPKAVMIMYT 486 (663)
Q Consensus 474 -----~i~~a~~vv~~~~ 486 (663)
...+.|.++.+.+
T Consensus 80 ~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 80 DWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1245677766664
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.98 Score=47.78 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhcC-
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~- 474 (663)
.++++|.|. |-+|+.+++.|. +.|++|+++++++++.+.+.+ ....++.+|.+|++-.+++-
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALA----------KRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence 456888876 789999999997 789999999999887665443 13567889999988765431
Q ss_pred -----CCCCcEEEEE
Q 006034 475 -----ITSPKAVMIM 484 (663)
Q Consensus 475 -----i~~a~~vv~~ 484 (663)
..+.|.+|-.
T Consensus 76 ~~~~~~~~iD~li~n 90 (322)
T PRK07453 76 DFRALGKPLDALVCN 90 (322)
T ss_pred HHHHhCCCccEEEEC
Confidence 1246766643
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.71 Score=50.19 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|.|+|. |..|+.+.+.|.+ .++.+++.+..+++.-+.+.+..-....+|..+.+-++.+.++++|.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~---------hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~Dv 107 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLAN---------HPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDA 107 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHh---------CCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCE
Confidence 4568999998 8999999999983 56889999988765544444433444456665555555555678999
Q ss_pred EEEEcCCH
Q 006034 481 VMIMYTDK 488 (663)
Q Consensus 481 vv~~~~dd 488 (663)
++.+++++
T Consensus 108 Vf~Alp~~ 115 (381)
T PLN02968 108 VFCCLPHG 115 (381)
T ss_pred EEEcCCHH
Confidence 99999885
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.65 Score=57.47 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCcc-----------hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH
Q 006034 402 GSEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~viI~G~g~~-----------g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L 470 (663)
.-++|+|+|.|.. |.++++.|+ +.|++|+++|.||.....-... ....+-++.+.+.+
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~----------e~G~~vi~v~~np~~~~~d~~~-ad~~y~ep~~~e~l 74 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALK----------EEGYQVVLVNPNPATIMTDPAP-ADTVYFEPLTVEFV 74 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHH----------HcCCEEEEEeCCcchhhcCccc-CCeeEECCCCHHHH
Confidence 4568999999986 778999998 8999999999999764321111 22334566667766
Q ss_pred Hh-cCCCCCcEEEEEcCCH-HHHHHHHH----HHHHhC-----CCCcEEEEecChh-hHHHHHHcCCCe
Q 006034 471 LS-AGITSPKAVMIMYTDK-KRTIEAVQ----RLRLAF-----PAIPIYARAQDMM-HLLDLKKAGATD 527 (663)
Q Consensus 471 ~~-a~i~~a~~vv~~~~dd-~~n~~~~~----~~r~~~-----~~~~iia~~~~~~-~~~~l~~~Gad~ 527 (663)
.+ +.-++.|+++.+.+.+ ..|....+ .+++.+ |+...+..++|.. ..+.+++.|+..
T Consensus 75 ~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpv 143 (1068)
T PRK12815 75 KRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPV 143 (1068)
T ss_pred HHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 55 3556889887766543 34433211 122332 3333444555543 456778888863
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.88 Score=47.87 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++-|+|+|++|+.+++.|. ..|.+|++.|++... .+.... ..+ +++ -++++|.+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~----------afG~~V~~~~r~~~~------~~~~~~---~~~---l~e-ll~~aDiv 177 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAK----------AFGMNIYAYTRSYVN------DGISSI---YME---PED-IMKKSDFV 177 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcc------cCcccc---cCC---HHH-HHhhCCEE
Confidence 3467999999999999999986 789999999987432 122111 112 222 13678988
Q ss_pred EEEcCCHHHH--HHHHHHHHHhCCCCcEE
Q 006034 482 MIMYTDKKRT--IEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 482 v~~~~dd~~n--~~~~~~~r~~~~~~~ii 508 (663)
++..+.++++ +.-......+.|+..+|
T Consensus 178 ~~~lp~t~~T~~li~~~~l~~mk~ga~lI 206 (303)
T PRK06436 178 LISLPLTDETRGMINSKMLSLFRKGLAII 206 (303)
T ss_pred EECCCCCchhhcCcCHHHHhcCCCCeEEE
Confidence 8888876544 33344556666664333
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=3.9 Score=49.04 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=71.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|.|. |.+|+.+++.|. +.|++|++++++++.. ...+..++.+|.+|++.++++ ++++|.||-
T Consensus 2 kILVTGATGfIGs~La~~Ll----------~~G~~Vv~l~R~~~~~---~~~~v~~v~gDL~D~~~l~~a-l~~vD~VVH 67 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLL----------SQGHEVVGIARHRPDS---WPSSADFIAADIRDATAVESA-MTGADVVAH 67 (854)
T ss_pred EEEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCchhh---cccCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4889986 999999999997 7899999999875431 123578899999999888654 356888877
Q ss_pred EcCC----HHHHHH----HHHHHHHhCCCCcEEEEecCh---hhHHHHHHcCCCeEE
Q 006034 484 MYTD----KKRTIE----AVQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAI 529 (663)
Q Consensus 484 ~~~d----d~~n~~----~~~~~r~~~~~~~iia~~~~~---~~~~~l~~~Gad~vi 529 (663)
+... .+.|+. ++..+++.+.+ ++ +-+.+. .-.+.+++.|.+.++
T Consensus 68 lAa~~~~~~~vNv~GT~nLLeAa~~~gvk-r~-V~iSS~~K~aaE~ll~~~gl~~vI 122 (854)
T PRK05865 68 CAWVRGRNDHINIDGTANVLKAMAETGTG-RI-VFTSSGHQPRVEQMLADCGLEWVA 122 (854)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHcCCC-eE-EEECCcHHHHHHHHHHHcCCCEEE
Confidence 6532 234544 33344554433 33 333332 334455666777643
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.91 Score=46.05 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=52.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. +.+|+.+++.|. +.|.++++++++++..+.+.+ . ...++..|.+|++.++++
T Consensus 12 k~vlVtG~s~gIG~~la~~l~----------~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56777765 788999999998 789999999999887665432 2 345778999999876542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.++-+.
T Consensus 82 ~~~~~~~~d~li~~a 96 (255)
T PRK06113 82 ALSKLGKVDILVNNA 96 (255)
T ss_pred HHHHcCCCCEEEECC
Confidence 224567776654
|
|
| >PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.08 Score=57.50 Aligned_cols=108 Identities=21% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCcHHHHHHHhhhhccCCchh--hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHH
Q 006034 228 GTSLLTQKLGFSDTLGAFLAGAILAETNFR--TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIII 305 (663)
Q Consensus 228 ~~~~l~~~~G~s~~lgAflaGl~l~~~~~~--~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~ 305 (663)
....+.+.++++..++-.++|++++..... +.-....+.+.++..++.....|.++|.+.+.+++...+......++.
T Consensus 10 ~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 89 (380)
T PF00999_consen 10 VAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLL 89 (380)
T ss_dssp --------------------------------------S-SSHHHHS--SSHHHHTTGGGG-------------------
T ss_pred HHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeee
Confidence 344478999999999999999999987433 111456666788888888889999999999987766555444444444
Q ss_pred HHHH-HHHHHh---hcCCChHHHHHHHHhhhhhh
Q 006034 306 KTLI-ISAIGP---RVGLTLQESVRIGLLLSQGG 335 (663)
Q Consensus 306 K~~~-~~~~~~---~~g~~~r~~~~~g~~l~~~G 335 (663)
-.+. .+.... ..|+++.+++..|..+++-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 90 PFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ------------------------TTHHHHTT--
T ss_pred hhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 4444 333332 47889999999998776654
|
These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.3 Score=47.37 Aligned_cols=72 Identities=18% Similarity=0.354 Sum_probs=57.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc----------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA---------- 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a---------- 473 (663)
.++-|+|.|-+|.-+|-.+. ..|.+|+-+|.|+++++.+.+ |...+. ++.++++++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA----------~~G~~ViG~DIn~~~Vd~ln~-G~~~i~-e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA----------SAGFKVIGVDINQKKVDKLNR-GESYIE-EPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHH----------HcCCceEeEeCCHHHHHHHhC-Ccceee-cCcHHHHHHHHHhcCCceEec
Confidence 67999999999999999997 899999999999999998876 333333 77777766543
Q ss_pred ---CCCCCcEEEEEcCC
Q 006034 474 ---GITSPKAVMIMYTD 487 (663)
Q Consensus 474 ---~i~~a~~vv~~~~d 487 (663)
.++.||+++++.+.
T Consensus 78 d~~~l~~~dv~iI~VPT 94 (436)
T COG0677 78 DPEELKECDVFIICVPT 94 (436)
T ss_pred ChhhcccCCEEEEEecC
Confidence 23388988888753
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.88 Score=46.43 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. +.+|+.+++.|. ++|++|+++++++++.+...+ . ....+..|.+|++-.+++
T Consensus 9 k~~lItGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLL----------EAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 56788887 679999999997 789999999999887655432 1 234678999999876542
Q ss_pred -----CCCCCcEEEEEcC
Q 006034 474 -----GITSPKAVMIMYT 486 (663)
Q Consensus 474 -----~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 2346787766543
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.59 E-value=4.9 Score=42.09 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=70.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHH--HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~--~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
-++.|+|.|++|+.....+.+ .++.+++ ++|.|++. .+..++.|....+.| -++.+++...++.|.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~---------~~~velvAVvdid~es~gla~A~~~Gi~~~~~~--ie~LL~~~~~~dIDi 73 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILR---------SEHLEPGAMVGIDPESDGLARARRLGVATSAEG--IDGLLAMPEFDDIDI 73 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhc---------CCCcEEEEEEeCChhhHHHHHHHHcCCCcccCC--HHHHHhCcCCCCCCE
Confidence 469999999999998877762 4566655 66888864 344555666554421 244555445577899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--------hhHHH-HHHcCCCeEEcCch
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--------MHLLD-LKKAGATDAILENA 533 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--------~~~~~-l~~~Gad~vi~p~~ 533 (663)
|+.+|+++ .....+..+.+.+. .++....-. -|.+. ....+.+.+.+|..
T Consensus 74 Vf~AT~a~-~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ 132 (302)
T PRK08300 74 VFDATSAG-AHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQ 132 (302)
T ss_pred EEECCCHH-HHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccH
Confidence 99999875 44455555666542 333322111 12222 23345778889985
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.36 Score=39.75 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
+++|+|.|..|-.+|..|. +.+.+|+++++++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~----------~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA----------ELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHH----------HhCcEEEEEeccchh
Confidence 5899999999999999998 789999999987764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.26 Score=43.58 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=54.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecC------CC-HHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDA------SR-PAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~------~~-~~~L~~a~i 475 (663)
++++|+|-|.++..+++.++ +.|+++++|..|++....-.+. +..+..++. .| +++++-+.-
T Consensus 3 kkvLIanrGeia~r~~ra~r----------~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALR----------ELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHH----------HTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------HhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhh
Confidence 57999999999999999998 8999999999999986544432 233333422 22 233444444
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHH
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRL 500 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~ 500 (663)
+.++++.-..+--.+|...+....+
T Consensus 73 ~g~~~i~pGyg~lse~~~fa~~~~~ 97 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAEFAEACED 97 (110)
T ss_dssp TTESEEESTSSTTTTHHHHHHHHHH
T ss_pred hcCcccccccchhHHHHHHHHHHHH
Confidence 4555554444444455554444443
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=1.5 Score=45.95 Aligned_cols=73 Identities=16% Similarity=0.039 Sum_probs=53.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h----cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~----~~~~vi~GD~~~~~~L~~a 473 (663)
.+.++|.|. |-+|+.+++.|. +.|++|+++++++++.+... + ....++.+|.+|++..+++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALA----------AKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence 356788876 899999999997 78999999999987754432 1 1355788999999876543
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 86 ~~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 86 ADALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHHHhhCCCCCEEEECC
Confidence 234567776554
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=1.1 Score=45.35 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc-----
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a----- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++.+++++..+...+ .....+..|.+|++.++++
T Consensus 15 ~k~vlItGas~~IG~~la~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFA----------AKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357888885 999999999997 789999999998875433332 2345788999999876543
Q ss_pred -CCCCCcEEEEEcC
Q 006034 474 -GITSPKAVMIMYT 486 (663)
Q Consensus 474 -~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 85 ~~~~~~d~vi~~ag 98 (255)
T PRK06841 85 SAFGRIDILVNSAG 98 (255)
T ss_pred HHhCCCCEEEECCC
Confidence 1235677766553
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.94 Score=48.07 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+.+-|+|+|++|+.+|+.++ .-|.++..-|+.+. -+...+ ..+-+-+ .++.|+ ++|.+
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~----------~Fgm~v~y~~~~~~-~~~~~~--~~~~y~~--l~ell~-----~sDii 204 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLK----------GFGMKVLYYDRSPN-PEAEKE--LGARYVD--LDELLA-----ESDII 204 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHh----------cCCCEEEEECCCCC-hHHHhh--cCceecc--HHHHHH-----hCCEE
Confidence 3567999999999999999997 78899999998875 111111 2222223 444554 56655
Q ss_pred EEEcCC--HHHHHHHHHHHHHhCCCCcEE
Q 006034 482 MIMYTD--KKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 482 v~~~~d--d~~n~~~~~~~r~~~~~~~ii 508 (663)
.+..+- +..++.-....+++.+.+.+|
T Consensus 205 ~l~~Plt~~T~hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 205 SLHCPLTPETRHLINAEELAKMKPGAILV 233 (324)
T ss_pred EEeCCCChHHhhhcCHHHHHhCCCCeEEE
Confidence 555543 455666667777777775444
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.94 Score=47.81 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=52.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH---HHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE---SRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~---~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
+.++|.|. |-+|+.+++.|. +.|++|+++.+|++..+. ..+ ....++.||.+|++.++++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLL----------LRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA- 74 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH-
Confidence 57889985 999999999997 789999987777654322 211 2467889999999988764
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++++|.|+-+.
T Consensus 75 ~~~~d~vih~A 85 (322)
T PLN02986 75 IEGCDAVFHTA 85 (322)
T ss_pred HhCCCEEEEeC
Confidence 33577776554
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=1.2 Score=45.66 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=48.8
Q ss_pred CcEEEEcCCc---chHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---HHHHHHhc-C-CCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFGQ---MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRKL-G-FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g~---~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---~~~~~~~~-~-~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.++ +|+.+++.|. ++|++|++.+++++ .++.+.+. + ..++..|.+|++-.+++
T Consensus 9 k~~lITGas~~~GIG~a~a~~la----------~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAK----------KHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHH----------HcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 4678889974 9999999997 78999999988743 34444332 3 23567999998766532
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+.|.+|..
T Consensus 79 ~~~~~~g~iDilVnn 93 (260)
T PRK06603 79 DIKEKWGSFDFLLHG 93 (260)
T ss_pred HHHHHcCCccEEEEc
Confidence 22456666543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=3.1 Score=43.34 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=49.8
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------------cCCCEEEecCCCHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------------LGFPILYGDASRPA 468 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------------~~~~vi~GD~~~~~ 468 (663)
+..++|+++|+|. |....+.++ .....+|++||.|++.++.+++ ....++.||+.+
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~---------~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~-- 142 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLK---------HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK-- 142 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHc---------CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--
Confidence 3457899999987 544444554 1234589999999998877664 235678898864
Q ss_pred HHHhcCCCCCcEEEEEcCC
Q 006034 469 VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~d 487 (663)
.+++ .-++.|.|++-..|
T Consensus 143 ~l~~-~~~~yDvIi~D~~d 160 (283)
T PRK00811 143 FVAE-TENSFDVIIVDSTD 160 (283)
T ss_pred HHhh-CCCcccEEEECCCC
Confidence 3443 34578988775443
|
|
| >COG0679 Predicted permeases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=36 Score=35.88 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=87.8
Q ss_pred CcHHHHHHHhhhhccCC--chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 006034 238 FSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIG 314 (663)
Q Consensus 238 ~s~~lgAflaGl~l~~~--~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~ 314 (663)
.+|.+=|++.|+.+... +..+.+.+.++.+.+...|+=.+.+|+.++....... ++.+......-++..++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888877753 4556777888888999999999999999999555433 33333333335777888888888
Q ss_pred hhcCCChHHHHHHH-HhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHH
Q 006034 315 PRVGLTLQESVRIG-LLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 375 (663)
Q Consensus 315 ~~~g~~~r~~~~~g-~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~ 375 (663)
...|++..+....= ....|.+....+++ .+.+.-.+...+.+.....++.+..|....
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~a---~~~~~~~~laa~~i~ist~ls~~t~p~~~~ 305 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVLA---RQYGGDPRLAASTILLSTLLSLLTLPLLIL 305 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHHH---HHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888766552111 12356665555544 445555555555555666666666655543
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.7 Score=53.72 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCcc--hH---------HHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HH
Q 006034 401 EGSEPVVIVGFGQM--GQ---------VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PA 468 (663)
Q Consensus 401 ~~~~~viI~G~g~~--g~---------~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~ 468 (663)
..+++|+|+|.|.. |+ .+++.|+ +.|++++++|.||+.+..-.+..... +-++.+ ++
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~----------~~G~~vI~v~~npetvs~d~~~~D~l-y~ep~~~e~ 620 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALR----------ELGYETIMINYNPETVSTDYDTSDRL-YFEPLTFED 620 (1050)
T ss_pred CCCceEEEecCcccccccccccchHHHHHHHHHH----------hCCCEEEEEecCCccccccccccceE-EEecCCHHH
Confidence 34568999999864 55 6699997 89999999999998753211111122 234433 44
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE-------EecC-hhhHHHHHHcCCC
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA-------RAQD-MMHLLDLKKAGAT 526 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia-------~~~~-~~~~~~l~~~Gad 526 (663)
+++-+.-++.|.++...++. .....+..+.+.+ ++++. +++| ....+.++++|+.
T Consensus 621 vl~i~~~e~idgVI~~~gg~-~~~~la~~le~~G--i~i~G~s~~~i~~~~DK~~f~~lL~~~GIp 683 (1050)
T TIGR01369 621 VMNIIELEKPEGVIVQFGGQ-TPLNLAKALEEAG--VPILGTSPESIDRAEDREKFSELLDELGIP 683 (1050)
T ss_pred HHHHHhhcCCCEEEEccCcH-hHHHHHHHHHHCC--CcEECCCHHHHHHHCCHHHHHHHHHHCCcC
Confidence 55556667889887766653 3333444444443 33332 2333 2345567888876
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.1 Score=46.07 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=55.2
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.| .|.+|+.+++.|. ++|++|++++++++..+.+.+ .....+.+|.+|++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAAL----------ERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVE 73 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 3577877 4899999999997 789999999999988766554 2466789999999877542
Q ss_pred CCCCCcEEEEEcC
Q 006034 474 GITSPKAVMIMYT 486 (663)
Q Consensus 474 ~i~~a~~vv~~~~ 486 (663)
.....|.+|-+.+
T Consensus 74 ~~~~~d~vi~~ag 86 (275)
T PRK08263 74 HFGRLDIVVNNAG 86 (275)
T ss_pred HcCCCCEEEECCC
Confidence 1245687776653
|
|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=4.9 Score=46.05 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=47.3
Q ss_pred ccCchhHHHHHHHHHHhccCCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 5 ILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 5 rl~lP~ivg~ilaGillGp~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
.+++-...|-+++|+++|.+|.- .-..+.++|+.+++|.+|++.-++.+...++..+.....+++++.
T Consensus 34 ~~~LG~~~g~L~vgl~~g~~~~~----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~ 101 (558)
T PRK04972 34 SIQLGNSIGVLVVSLLLGQQHFS----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVG 101 (558)
T ss_pred eEecCcchHHHHHHHHHHhCCCC----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555666889999999987742 122356899999999999999998776665554444444444433
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.59 Score=49.43 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+.+.|+|+|++|+.+|+.+. ..|.+|...|+..... +.++. -.+=+++ ++++|.|
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~----------~fgm~V~~~d~~~~~~----~~~~~----~~~l~el-----l~~sDvv 200 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQ----------AFGAKVVYYSTSGKNK----NEEYE----RVSLEEL-----LKTSDII 200 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHh----------hcCCEEEEECCCcccc----ccCce----eecHHHH-----hhcCCEE
Confidence 4467999999999999999997 7899999999754221 11221 1111223 4567888
Q ss_pred EEEcCCH--HHHHHHHHHHHHhCCCCcEE
Q 006034 482 MIMYTDK--KRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 482 v~~~~dd--~~n~~~~~~~r~~~~~~~ii 508 (663)
++..+-. ..++.-......+.|+..+|
T Consensus 201 ~lh~Plt~~T~~li~~~~~~~Mk~~a~lI 229 (311)
T PRK08410 201 SIHAPLNEKTKNLIAYKELKLLKDGAILI 229 (311)
T ss_pred EEeCCCCchhhcccCHHHHHhCCCCeEEE
Confidence 8877643 44566666777777764433
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=88.28 E-value=1.9 Score=46.12 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=57.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--------CCEEEEeC-----ChHHHHHHHhcCCCE--EEec------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--------WPFVAFDL-----NPSVVKESRKLGFPI--LYGD------ 463 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--------~~vvvid~-----d~~~~~~~~~~~~~v--i~GD------ 463 (663)
+|.|+|.|++|..+|..|. +++ ++|.+-.+ +++..+.+.+...+. +.|=
T Consensus 1 kI~VIGaG~wGtALA~~la----------~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA----------ENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCe
Confidence 4789999999999999997 556 89999988 556666665432222 2120
Q ss_pred -CCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 006034 464 -ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARA 511 (663)
Q Consensus 464 -~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~ 511 (663)
+++ -+++ -+++||.+++++++...-- ++...+. +.++..++..+
T Consensus 71 ~at~--dl~e-al~~ADiIIlAVPs~~i~~-vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 71 VAVP--DLVE-AAKGADILVFVIPHQFLEG-ICKQLKGHVKPNARAISCI 116 (342)
T ss_pred EEEC--CHHH-HHhcCCEEEEECChHHHHH-HHHHHHhhcCCCCEEEEEe
Confidence 111 1222 2468899999999864322 2334443 33443455543
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.62 Score=49.75 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=51.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..++.|+|+|++|+.+++.|.+ ..|.+|...|++++... . ... .. ..+ ++++ ++++|.++
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~---------~~g~~V~~~d~~~~~~~--~-~~~---~~-~~~---l~el-l~~aDvIv 205 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK---------GYGSDVVAYDPFPNAKA--A-TYV---DY-KDT---IEEA-VEGADIVT 205 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------cCCCEEEEECCCccHhH--H-hhc---cc-cCC---HHHH-HHhCCEEE
Confidence 3479999999999999999931 57889999998765421 1 111 10 112 2222 45789898
Q ss_pred EEcCCHHHHHHH--HHHHHHhCCC
Q 006034 483 IMYTDKKRTIEA--VQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~n~~~--~~~~r~~~~~ 504 (663)
++++....+-.+ ....+.+.|+
T Consensus 206 l~lP~t~~t~~li~~~~l~~mk~g 229 (332)
T PRK08605 206 LHMPATKYNHYLFNADLFKHFKKG 229 (332)
T ss_pred EeCCCCcchhhhcCHHHHhcCCCC
Confidence 887775443332 2334455555
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=1.1 Score=45.73 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC---hHHHHHHHhc----CCCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN---PSVVKESRKL----GFPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d---~~~~~~~~~~----~~~vi~GD~~~~~~L~~ 472 (663)
.+.++|.|. +.+|+.++++|. ++|++|++.+++ +++.+++.+. ....+..|.+|++-.++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLH----------NAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH----------HCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHH
Confidence 357899998 489999999998 789999998654 3455555431 24567899999986643
Q ss_pred c------CCCCCcEEEE
Q 006034 473 A------GITSPKAVMI 483 (663)
Q Consensus 473 a------~i~~a~~vv~ 483 (663)
+ ...+.|.+|.
T Consensus 77 ~~~~~~~~~g~ld~lv~ 93 (257)
T PRK08594 77 CFETIKEEVGVIHGVAH 93 (257)
T ss_pred HHHHHHHhCCCccEEEE
Confidence 2 2345676654
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.2 Score=47.74 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=54.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHH-------------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL------------- 471 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~------------- 471 (663)
++-|+|.|-+|...+-.|. +.||+|+.+|.|+++++.+.+...+.+. +-=++.|+
T Consensus 2 kI~viGtGYVGLv~g~~lA----------~~GHeVv~vDid~~KV~~ln~g~~PI~E--pgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 2 KITVIGTGYVGLVTGACLA----------ELGHEVVCVDIDESKVELLNKGISPIYE--PGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred ceEEECCchHHHHHHHHHH----------HcCCeEEEEeCCHHHHHHHhCCCCCCcC--ccHHHHHHhccccCcEEEEcC
Confidence 5789999999999999998 8999999999999999998874444432 22233343
Q ss_pred -hcCCCCCcEEEEEcCC
Q 006034 472 -SAGITSPKAVMIMYTD 487 (663)
Q Consensus 472 -~a~i~~a~~vv~~~~d 487 (663)
++.++++|.++++++.
T Consensus 70 ~~~a~~~adv~fIavgT 86 (414)
T COG1004 70 YEEAVKDADVVFIAVGT 86 (414)
T ss_pred HHHHHhcCCEEEEEcCC
Confidence 2346688988888764
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=2.9 Score=43.09 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=65.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCCh--HHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNP--SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~--~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|+|++|+.+++.+.+ .++.+++.+ +.++ ++.......+. .++ +|.+.+ -.+.|.+
T Consensus 3 rVgIiG~G~iG~~~~~~l~~---------~~~~~l~~v~~~~~~~~~~~~~~~~~~-~~~---~d~~~l----~~~~DvV 65 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEH---------DPDLRVDWVIVPEHSIDAVRRALGEAV-RVV---SSVDAL----PQRPDLV 65 (265)
T ss_pred EEEEECCCHHHHHHHHHHhh---------CCCceEEEEEEcCCCHHHHhhhhccCC-eee---CCHHHh----ccCCCEE
Confidence 68999999999999999972 445665544 3332 22221111121 222 233333 3678999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEe----cChhh----HHHHHHcCCCeEEcCchHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARA----QDMMH----LLDLKKAGATDAILENAETSLQLGS 541 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~----~~~~~----~~~l~~~Gad~vi~p~~~~~~~la~ 541 (663)
+.+++.+.. ...+..+-+.+. ++++.. .+++. .+..++.|....+.+....+..+-+
T Consensus 66 ve~t~~~~~-~e~~~~aL~aGk--~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 66 VECAGHAAL-KEHVVPILKAGI--DCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred EECCCHHHH-HHHHHHHHHcCC--CEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 999987644 344444444443 455421 23333 2345667887677666555444333
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.98 Score=46.48 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=49.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH----Hhc--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~----~~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. +.+|+.+++.|. ++|++|++++++ +..+.. .+. ...++..|.+|++.++++
T Consensus 7 k~vlItGas~gIG~aia~~l~----------~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALA----------QEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 46888887 779999999997 789999999999 443332 222 356788999998766432
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 76 ~~~~~g~id~li~~ 89 (272)
T PRK08589 76 IKEQFGRVDVLFNN 89 (272)
T ss_pred HHHHcCCcCEEEEC
Confidence 12356766544
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=88.16 E-value=2.8 Score=45.23 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh-------------------HHHH----HHHh--c
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVK----ESRK--L 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~-------------------~~~~----~~~~--~ 455 (663)
.+.+|+|+|.|-.|..+++.|. ..|. ++.++|.|. .+++ ++++ .
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLA----------GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 3468999999999999999997 5565 689999885 2222 2222 1
Q ss_pred C--CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 456 G--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 456 ~--~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
. ..++..+.+.++..+- ++++|.||.++++-+.-..+...+++.+
T Consensus 97 ~v~v~~~~~~i~~~~~~~~--~~~~DvVvd~~d~~~~r~~~n~~c~~~~ 143 (355)
T PRK05597 97 DVKVTVSVRRLTWSNALDE--LRDADVILDGSDNFDTRHLASWAAARLG 143 (355)
T ss_pred CcEEEEEEeecCHHHHHHH--HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2 2233445554333322 5689988888887665556667777776
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=1 Score=45.85 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHH-HHH----HHhc---CCCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSV-VKE----SRKL---GFPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~-~~~----~~~~---~~~vi~GD~~~~~~L~ 471 (663)
..++++|.|. |.+|+.++++|. ++ +++|+++++|++. .+. +.+. +..++.+|.+|++-.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~----------~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~ 76 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYL----------KNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHP 76 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH----------hcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHH
Confidence 3457888876 889999999997 55 5899999998875 333 3222 3577899999877533
Q ss_pred h----c-CCCCCcEEEEEc
Q 006034 472 S----A-GITSPKAVMIMY 485 (663)
Q Consensus 472 ~----a-~i~~a~~vv~~~ 485 (663)
+ + .-.+.|.+|...
T Consensus 77 ~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHhcCCCCEEEEee
Confidence 2 1 113678776544
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.07 E-value=3.1 Score=43.22 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|+|+|+|-.|..+++.|. ..|. ++.++|.|.=....+. -++++. +..+.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA----------~aGVG~i~lvD~D~Ve~SNLn---RQ~l~~---------~~diG~~-- 81 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLA----------RLGIGKFTIADFDVFELRNFN---RQAGAM---------MSTLGRP-- 81 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHH----------HhCCCeEEEEeCCCcchhccc---cccCcC---------hhHCCCc--
Confidence 3568999999999999999997 5555 6899998764433221 222211 1111111
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHcCCCeEEcCch
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~--~~~~~~~l~~~Gad~vi~p~~ 533 (663)
..-.+...++++||+++|.+... ++++...+- .+.|.|++-..
T Consensus 82 ---------Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll-~~~DlVvD~~D 126 (287)
T PRK08223 82 ---------KAEVLAEMVRDINPELEIRAFPEGIGKENADAFL-DGVDVYVDGLD 126 (287)
T ss_pred ---------HHHHHHHHHHHHCCCCEEEEEecccCccCHHHHH-hCCCEEEECCC
Confidence 22335678899999998776543 333433332 36898987653
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=88.06 E-value=2.3 Score=50.31 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHH---HHH--
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---VLL-- 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~---~L~-- 471 (663)
.-++|.|+|.|.+|..+|..+. ..|++|+++|.|++..++..+. ...+-.|..+.++ .+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSA----------SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEECCchHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 4568999999999999999997 7899999999999986654320 0111122222211 111
Q ss_pred -----hcCCCCCcEEEEEcCCH
Q 006034 472 -----SAGITSPKAVMIMYTDK 488 (663)
Q Consensus 472 -----~a~i~~a~~vv~~~~dd 488 (663)
-..+++||.||=+..+|
T Consensus 382 ~~~~~~~~~~~aDlViEav~E~ 403 (714)
T TIGR02437 382 TPTLSYAGFDNVDIVVEAVVEN 403 (714)
T ss_pred EEeCCHHHhcCCCEEEEcCccc
Confidence 12467899888777765
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=88.06 E-value=1.4 Score=46.67 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
..+++.|+|.|..|+..++.+.. .....++.+.++++++.+.+.++ +..+.. ..+.+ .-+++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~--------~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~--~~~~~----~av~~ 189 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHAS--------VRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV--VTDLE----AAVRQ 189 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHh--------cCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE--eCCHH----HHHhc
Confidence 35679999999999999986641 03457899999999998887653 333322 22222 12468
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
||.|+.+|++++ -+ .....+.|...|.+
T Consensus 190 aDIVi~aT~s~~-pv---l~~~~l~~g~~i~~ 217 (314)
T PRK06141 190 ADIISCATLSTE-PL---VRGEWLKPGTHLDL 217 (314)
T ss_pred CCEEEEeeCCCC-CE---ecHHHcCCCCEEEe
Confidence 998888888752 21 22345566654444
|
|
| >PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase | Back alignment and domain information |
|---|
Probab=88.03 E-value=39 Score=35.79 Aligned_cols=117 Identities=20% Similarity=0.161 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCc--HHHHHHHhhhhccCCc-hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhh---hHHHHHHHH
Q 006034 226 VAGTSLLTQKLGFS--DTLGAFLAGAILAETN-FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---EWPNVLALL 299 (663)
Q Consensus 226 ~~~~~~l~~~~G~s--~~lgAflaGl~l~~~~-~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~---~~~~~l~~~ 299 (663)
+...+++.+.++++ ..+|+++.+.++.... .....-+.+ ..+..-+.=.++|.+++...+.+ .++..+...
T Consensus 164 ~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l---~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~ 240 (318)
T PF05145_consen 164 ALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL---VNAAQVLIGASIGSRFTRETLRELRRLLPPALLST 240 (318)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 33445566655553 3566666555554321 000111111 12222223356788888776643 234444445
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHc
Q 006034 300 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRL 348 (663)
Q Consensus 300 ~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~ 348 (663)
+..+..-.+..++..++.++++.+++. +++|.|.-++.+.....+.
T Consensus 241 ~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~ 286 (318)
T PF05145_consen 241 LLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGA 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCC
Confidence 555566667778888889999888773 3589998888876665543
|
The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.5 Score=46.15 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=78.1
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHHHhcCC
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L~~a~i 475 (663)
+.|+|.|.+|..++-.|. ..+ .+++++|.++++++.... . ...-++. .+|. ..+
T Consensus 1 i~iiGaG~VG~~~a~~l~----------~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-----~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI----------AKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-----ADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-----HHh
Confidence 478999999999999886 455 579999999987654432 1 1112221 1222 256
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCC--CeEEcC-chH
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGA--TDAILE-NAE 534 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Ga--d~vi~p-~~~ 534 (663)
++||.+|++.+. | ..|+. ++..+++.+|+.. +..+.||.+.- .+ +..|. .+|+-- ...
T Consensus 65 ~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~-viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~l 143 (300)
T cd00300 65 ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAI-ILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLL 143 (300)
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEccChHHHHHHHHHHHhCcCHHHEEecCCcH
Confidence 899988887763 1 23444 4455667788855 44445654332 22 33343 345544 334
Q ss_pred HHHHHHHHHHHhcCCCHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~ 554 (663)
-..++-+.+-+.+++++..+
T Consensus 144 Ds~r~~~~la~~l~v~~~~v 163 (300)
T cd00300 144 DSARFRSLLAEKLDVDPQSV 163 (300)
T ss_pred HHHHHHHHHHHHhCCCcccE
Confidence 34566666666667766443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=87.97 E-value=10 Score=40.05 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=77.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCCh--HHHHHHH----h----cCCCE-EEecCCCHHHH
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNP--SVVKESR----K----LGFPI-LYGDASRPAVL 470 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~--~~~~~~~----~----~~~~v-i~GD~~~~~~L 470 (663)
+|.|+|. |.+|..++..|. ..|. +++++|.++ +..+... + .+... +.+ .+|.
T Consensus 2 kI~IiGatG~vG~~~a~~l~----------~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d~--- 67 (309)
T cd05294 2 KVSIIGASGRVGSATALLLA----------KEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSDL--- 67 (309)
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCCH---
Confidence 6899998 999999999997 4554 499999965 3321111 1 11111 222 1222
Q ss_pred HhcCCCCCcEEEEEcCC------H-----HHHHH----HHHHHHHhCCCCcEEEEecChhh--H-HHHHHcCCC--eEEc
Q 006034 471 LSAGITSPKAVMIMYTD------K-----KRTIE----AVQRLRLAFPAIPIYARAQDMMH--L-LDLKKAGAT--DAIL 530 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~d------d-----~~n~~----~~~~~r~~~~~~~iia~~~~~~~--~-~~l~~~Gad--~vi~ 530 (663)
+ .+.+||.++++.+. + ..|.. ++...++.+|+..+++-. |+-+ . -..+..|.+ +++-
T Consensus 68 ~--~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~-npvd~~t~~~~~~~g~~~~~viG 144 (309)
T cd05294 68 S--DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT-NPVDVMTYKALKESGFDKNRVFG 144 (309)
T ss_pred H--HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHHHhcCCCHHHEee
Confidence 2 27899999888762 1 12333 334456667775544444 4432 2 223444543 4554
Q ss_pred C-chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 531 E-NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 531 p-~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
- ..+-+.++.+.+-+.+++++..++
T Consensus 145 ~gt~LDs~R~~~~la~~l~v~~~~v~ 170 (309)
T cd05294 145 LGTHLDSLRFKVAIAKHFNVHISEVH 170 (309)
T ss_pred ccchHHHHHHHHHHHHHHCcChHHeE
Confidence 4 344455667777777888886554
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.57 Score=51.09 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=42.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i 475 (663)
..|+|+|.|..|..+|-.|. +.|++|+++|+.++.. .+.+ ..+.=.+...++|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~----------~~G~~V~l~E~~~~~~---~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALA----------RAGLDVTLLERAPREL---LERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHH----------hCCCcEEEEccCcccc---ccCc-eeeeecHhHHHHHHHcCC
Confidence 36999999999999999998 8999999999983221 1112 333334455667777777
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.81 Score=45.11 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
...++|-|+|.|.+|..+|+.-. +.|++|.++|.|++...++.
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a----------~sg~~V~l~d~~~~aL~~A~ 51 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAA----------TSGLNVWLVDANEDALSRAT 51 (298)
T ss_pred ccccceEEEcccccchhHHHHHH----------hcCCceEEecCCHHHHHHHH
Confidence 35679999999999999999876 89999999999999866554
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.4 Score=46.14 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=54.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCE--EEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPI--LYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~v--i~GD~~~~~~L~~a--- 473 (663)
.+.++|.|. |-+|+.+++.|. +.|++|+++++|+++.+.+.+. +..+ +..|.+|++-++++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLH----------ARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHH
Confidence 356888886 779999999997 7899999999999987765441 2333 44999999876543
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|...+
T Consensus 79 ~~~~~g~id~vI~nAG 94 (296)
T PRK05872 79 AVERFGGIDVVVANAG 94 (296)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1245687766543
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.3 Score=45.24 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=49.9
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---HHHHHhc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---VKESRKL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---~~~~~~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ -+|+.+++.|. ++|.+|++.+++++. .+++.++ ...++..|.+|++-.+++
T Consensus 11 k~~lItGas~g~GIG~a~a~~la----------~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFR----------ALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHH
Confidence 567888986 69999999998 789999999988643 3333332 245678999998866542
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+-|.+|..
T Consensus 81 ~~~~~~g~ld~lv~n 95 (258)
T PRK07533 81 RIAEEWGRLDFLLHS 95 (258)
T ss_pred HHHHHcCCCCEEEEc
Confidence 22356766543
|
|
| >TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family | Back alignment and domain information |
|---|
Probab=87.82 E-value=8.9 Score=40.60 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred cccccCchhHHHHHHHHHHhccCCCcCCc---hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQLGIIRNL---TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~glv~~~---~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
+.+-++.|.+++ .++|+++..+|+--+. +.++.+++....+-||..|+.++.+.+++..|........-.++.=++
T Consensus 176 ~~~~~~nP~iia-~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i 254 (321)
T TIGR00946 176 WKKLIKFPPLWA-PLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAV 254 (321)
T ss_pred HHHHHhCCChHH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
+..+ ..+++ --....-...+.+..-+++...++.++--.+.+.....+..+.+--++.
T Consensus 255 ~~~~-------------~~~~~---------l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~t 312 (321)
T TIGR00946 255 MAGI-------------SKLIG---------LRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLIS 312 (321)
T ss_pred HHHH-------------HHHhC---------CChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 006034 159 VPLLVIL 165 (663)
Q Consensus 159 i~~l~i~ 165 (663)
+++...+
T Consensus 313 lp~~~~l 319 (321)
T TIGR00946 313 LPLFIIL 319 (321)
T ss_pred HHHHHHH
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.3 Score=49.30 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHh--cCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRK--LGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~--~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
..+.++|+|.|..|..+|+.|. +.|++|.+.|.++. ..+.+++ .|..+..|.- +++.+ ++
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~-~~~~~-----~~ 68 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLA----------RQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGF-DCELL-----VQ 68 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHH----------hCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCC-ChHHh-----cC
Confidence 4567999999999999999997 89999999997653 2234554 3677776632 23333 46
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+|.||....=+..|- ....||+.+
T Consensus 69 ~d~vV~sp~i~~~~p-~~~~a~~~~ 92 (448)
T PRK03803 69 ASEIIISPGLALDTP-ALRAAAAMG 92 (448)
T ss_pred CCEEEECCCCCCCCH-HHHHHHHCC
Confidence 786766554333343 344455543
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.1 Score=50.19 Aligned_cols=87 Identities=13% Similarity=-0.014 Sum_probs=55.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH----HHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~----~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|+|+|+-|+..++.|. +.|.+|++.|.++. ..+++++ +...+.|+-. ++.+ +++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~----------~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~-~~~~-----~~~ 70 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALR----------AHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS-AQRL-----AAF 70 (468)
T ss_pred CCEEEEEccchhhHHHHHHHH----------HcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC-hHHc-----cCC
Confidence 357999999999999999998 89999999997543 1223444 3444444322 3333 568
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
|.||...+=+..|- ....+|+.+ ++++.
T Consensus 71 d~vV~SpgI~~~~p-~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 71 DVVVKSPGISPYRP-EALAAAARG--TPFIG 98 (468)
T ss_pred CEEEECCCCCCCCH-HHHHHHHcC--CcEEE
Confidence 87766554333333 355556654 45555
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.84 Score=51.17 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH-HHhcCCCEEEe------cCCCHH-HHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE-SRKLGFPILYG------DASRPA-VLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~-~~~~~~~vi~G------D~~~~~-~L~~a 473 (663)
.-++++|+|.|+++..+++.++ +.|++++++..+++.... .+..+..+..| |..|.+ +++.+
T Consensus 4 ~~~~vLi~~~geia~~ii~aa~----------~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a 73 (467)
T PRK12833 4 RIRKVLVANRGEIAVRIIRAAR----------ELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAA 73 (467)
T ss_pred CCcEEEEECCcHHHHHHHHHHH----------HcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHH
Confidence 4578999999999999999998 899999999654432111 11112223234 555644 45555
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHh-----CCCCcEEEEecCh-hhHHHHHHcCCCe
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLA-----FPAIPIYARAQDM-MHLLDLKKAGATD 527 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~-----~~~~~iia~~~~~-~~~~~l~~~Gad~ 527 (663)
.-.++|+++...+-..+|...+..+.+. +|+...+..+.|. ...+.++++|+..
T Consensus 74 ~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~ 133 (467)
T PRK12833 74 RQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPT 133 (467)
T ss_pred HHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 6667888876553323344333334443 3333344444444 4555678888874
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.2 Score=49.47 Aligned_cols=74 Identities=23% Similarity=0.185 Sum_probs=51.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--------------------HHHHHH---hcCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--------------------VVKESR---KLGF 457 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--------------------~~~~~~---~~~~ 457 (663)
..++++|.|. |-+|+.+++.|. ++|++|+++|+... +.+... ..+.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~----------~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 115 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLS----------KRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEI 115 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcc
Confidence 3456999986 999999999998 78999999984211 111111 1357
Q ss_pred CEEEecCCCHHHHHhcCC-CCCcEEEEEc
Q 006034 458 PILYGDASRPAVLLSAGI-TSPKAVMIMY 485 (663)
Q Consensus 458 ~vi~GD~~~~~~L~~a~i-~~a~~vv~~~ 485 (663)
.++.||.+|++.++++=- .+.|.|+-+.
T Consensus 116 ~~v~~Dl~d~~~v~~~l~~~~~D~ViHlA 144 (442)
T PLN02572 116 ELYVGDICDFEFLSEAFKSFEPDAVVHFG 144 (442)
T ss_pred eEEECCCCCHHHHHHHHHhCCCCEEEECC
Confidence 899999999988765311 1467666544
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.64 E-value=0.48 Score=44.25 Aligned_cols=107 Identities=22% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
...++|.++|| .+ ++++|+ +.+.++.++|.|++...... ..+ ++...+++| ++||
T Consensus 9 ~~~~~V~~VG~f~P----~~~~l~----------~~~~~v~v~d~~~~~~~~~~----~~~-~~~~~~~~l-----~~aD 64 (147)
T PF04016_consen 9 GPGDKVGMVGYFQP----LVEKLK----------ERGAEVRVFDLNPDNIGEEP----GDV-PDEDAEEIL-----PWAD 64 (147)
T ss_dssp TTTSEEEEES--HC----CHHHHC----------CCCSEEEEEESSGGG--SSC----T-E-EGGGHHHHG-----GG-S
T ss_pred cCCCEEEEEcCcHH----HHHHHh----------cCCCCEEEEECCCCCCCCCC----CcC-CHHHHHHHH-----ccCC
Confidence 46678999996 23 677886 78999999999998754211 111 555555555 4688
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec-ChhhHHHHHHcCCCeEEcCc
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-~~~~~~~l~~~Gad~vi~p~ 532 (663)
.+ +.|+..-.|-.+-..++...+..+++.--. .+-+-+.|.+.|+|++--..
T Consensus 65 ~v-iiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~ 117 (147)
T PF04016_consen 65 VV-IITGSTLVNGTIDDILELARNAREVILYGPSAPLHPEALFDYGVTYVGGSR 117 (147)
T ss_dssp EE-EEECHHCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEE
T ss_pred EE-EEEeeeeecCCHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEEEEEE
Confidence 55 455544344333333333332324444333 44455588999999864443
|
; PDB: 3L5O_B 3NPG_A. |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=87.62 E-value=0.55 Score=50.52 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=65.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
++.|+|.|+.|+.+++..+ +.|++|+++|.+++.... +.....+.+|..|++.+++.- +++|.+ +
T Consensus 1 ~igiiG~gql~~~l~~aa~----------~lG~~v~~~d~~~~~p~~--~~ad~~~~~~~~d~~~i~~~a-~~~dvi--t 65 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAAR----------PLGIKVHVLDPDANSPAV--QVADHVVLAPFFDPAAIRELA-ESCDVI--T 65 (352)
T ss_pred CEEEECCCHHHHHHHHHHH----------HcCCEEEEECCCCCCChh--HhCceeEeCCCCCHHHHHHHH-hhCCEE--E
Confidence 3679999999999999997 789999999998764221 112335578999999887642 456744 3
Q ss_pred cCCHHHHHHHHHHHHHh----CCCCcEEEEecCh-hhHHHHHHcCCCe
Q 006034 485 YTDKKRTIEAVQRLRLA----FPAIPIYARAQDM-MHLLDLKKAGATD 527 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r~~----~~~~~iia~~~~~-~~~~~l~~~Gad~ 527 (663)
.+.+..+......+.+. .|+...+..++|. ...+.+++.|+..
T Consensus 66 ~e~e~i~~~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~ 113 (352)
T TIGR01161 66 FEFEHVDVEALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPV 113 (352)
T ss_pred eCcCcCCHHHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 33222222222333333 2222233333333 3445667777763
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.62 E-value=1.5 Score=45.97 Aligned_cols=137 Identities=23% Similarity=0.277 Sum_probs=80.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----cCC-CEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGF-PILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~~~-~vi~GD~~~~~~L~~a~i 475 (663)
+|.|+|.|++|+.++-.|.. +..+.+++++|.+++..+- +.+ .+. .-+.+| .| -..+
T Consensus 2 KVaviGaG~VG~s~a~~l~~--------~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~-----y~~~ 67 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLLLL--------QGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD-----YEDL 67 (313)
T ss_pred eEEEECCChHHHHHHHHHhc--------ccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC-----hhhh
Confidence 68999999999999998852 2345689999999665332 222 111 122333 22 2356
Q ss_pred CCCcEEEEEcC---------CH--HHHHHHH----HHHHHhCCCCcEEEEecChhhHH--HH-HHcC--CCeEEcC-chH
Q 006034 476 TSPKAVMIMYT---------DK--KRTIEAV----QRLRLAFPAIPIYARAQDMMHLL--DL-KKAG--ATDAILE-NAE 534 (663)
Q Consensus 476 ~~a~~vv~~~~---------dd--~~n~~~~----~~~r~~~~~~~iia~~~~~~~~~--~l-~~~G--ad~vi~p-~~~ 534 (663)
++||.|+++.+ +| +.|..+. ...++.+|+. ++-.+.||-+.- .. +..| ..+|+-. ..+
T Consensus 68 ~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~-ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~L 146 (313)
T COG0039 68 KGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDA-IVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVL 146 (313)
T ss_pred cCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCe-EEEEecCcHHHHHHHHHHhcCCCccceecccchH
Confidence 89998887762 23 4555543 4445557774 444555554433 22 3333 3343332 335
Q ss_pred HHHHHHHHHHHhcCCCHHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~~ 556 (663)
-..++-..+-+.+++++..++.
T Consensus 147 DsaR~~~~lae~~~v~~~~V~~ 168 (313)
T COG0039 147 DSARFRTFLAEKLGVSPKDVHA 168 (313)
T ss_pred HHHHHHHHHHHHhCCChhHcee
Confidence 5566777777777888766653
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.96 Score=45.03 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=49.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc-----CCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-----GITS 477 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a-----~i~~ 477 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++. +....++.+|.+|++..+++ .-.+
T Consensus 4 k~vlItG~s~~iG~~ia~~l~----------~~G~~v~~~~r~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 68 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLA----------NLGHQVIGIARSAID-----DFPGELFACDLADIEQTAATLAQINEIHP 68 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEeCCccc-----ccCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 46888887 889999999998 789999999998765 12336789999999765431 1114
Q ss_pred CcEEEEEc
Q 006034 478 PKAVMIMY 485 (663)
Q Consensus 478 a~~vv~~~ 485 (663)
.|.++-+.
T Consensus 69 ~d~vi~~a 76 (234)
T PRK07577 69 VDAIVNNV 76 (234)
T ss_pred CcEEEECC
Confidence 57776543
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.4 Score=45.44 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=49.4
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH---HHHHh-cC-CCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRK-LG-FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~---~~~~~-~~-~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ -+|+.+++.|. +.|++|++.+++++.. +.+.+ .+ ...+..|.+|++-.+++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLA----------AQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHH----------hCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHH
Confidence 568888987 59999999998 7999999998876432 33322 23 34678999998765432
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 78 ~~~~~~g~iD~lVnn 92 (271)
T PRK06505 78 ALEKKWGKLDFVVHA 92 (271)
T ss_pred HHHHHhCCCCEEEEC
Confidence 22356666543
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.2 Score=45.41 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH---HHHhc--CCCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESRKL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~---~~~~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
.++++|.| .|.+|+.+++.|. ++|++|++++++++..+ ...+. ....+.+|.+|++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~----------~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFA----------RHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKR 75 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 35788887 5789999999998 78999999999875322 22222 245788999998876653
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~~~~~~id~vi~~a 90 (263)
T PRK08226 76 AKEKEGRIDILVNNA 90 (263)
T ss_pred HHHHcCCCCEEEECC
Confidence 123556665543
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.48 E-value=3.2 Score=43.08 Aligned_cols=134 Identities=16% Similarity=0.046 Sum_probs=78.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEE-EecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPIL-YGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi-~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|-.++.++..|. +.| .+++|+.+++++.+++.+.--... .....+.+-+... +++|.
T Consensus 126 ~~~vlilGAGGAarAv~~aL~----------~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~--~~~dl 193 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALA----------EAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGL--EEADL 193 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccc--cccCE
Confidence 468999999999999999998 677 579999999999998876311110 1111111112211 17998
Q ss_pred EEEEcCCHHHH---HHHHHHHHHhCCCCcEEE-EecChh---hHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCH
Q 006034 481 VMIMYTDKKRT---IEAVQRLRLAFPAIPIYA-RAQDMM---HLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 481 vv~~~~dd~~n---~~~~~~~r~~~~~~~iia-~~~~~~---~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~ 551 (663)
+|=+|+-.... -.... .+..++..++. .+.++. ..+..++.|+. +++--...-.|-+...--..|..|
T Consensus 194 iINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~-~idGl~Mlv~Qaa~aF~lwtg~~p 268 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP--AELLPKGAIVYDVVYNPLETPLLREARAQGAK-TIDGLGMLVHQAAEAFELWTGVEP 268 (283)
T ss_pred EEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe-EECcHHHHHHHHHHHHHHHhCCCC
Confidence 88777642111 11111 33333434443 444544 44555667887 777665444444444444444444
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.1 Score=46.28 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=52.0
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.| .|-+|+.+++.|. ++|++|++.+++++..+...+ .+ ...+..|.+|++-++++
T Consensus 7 k~vlVTGas~gIG~ala~~La----------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFA----------RRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577777 5889999999998 789999999999877655432 23 45678999998877542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~g~id~li~nA 91 (275)
T PRK05876 77 AFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHcCCCCEEEECC
Confidence 123457665533
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.2 Score=44.65 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=52.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHH----h---cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESR----K---LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~----~---~~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++ ++..+... + .....+++|.+|++.++++-
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 76 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLH----------AAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELV 76 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHH
Confidence 57888886 899999999998 789999999985 33333322 2 23667899999998776431
Q ss_pred ------CCCCcEEEEEcC
Q 006034 475 ------ITSPKAVMIMYT 486 (663)
Q Consensus 475 ------i~~a~~vv~~~~ 486 (663)
..+.|.++-+.+
T Consensus 77 ~~~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 77 AACVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 235687775554
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=0.51 Score=51.22 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
.+-+|+|+|.|..|..+|-.|. +.|++|+++|++++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~----------~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALA----------QSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHH----------hCCCeEEEEecCCCc
Confidence 4457999999999999999997 789999999998774
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.78 Score=47.87 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=51.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|.|. |-+|+.+++.|. +.|++|+.+|+.+....... .+...+.+|.+|.+..+++--...|+|+-
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih 70 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLL----------AAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIH 70 (314)
T ss_pred eEEEEcCcccHHHHHHHHHH----------hCCCeEEEEeCCCccccccc-cccceeeecccchHHHHHHHhcCCCEEEE
Confidence 3899995 999999999998 67999999999887665444 56788999999987666542222155544
Q ss_pred E
Q 006034 484 M 484 (663)
Q Consensus 484 ~ 484 (663)
+
T Consensus 71 ~ 71 (314)
T COG0451 71 L 71 (314)
T ss_pred c
Confidence 3
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.3 Score=45.53 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=51.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC---CCEEEecCCCHHHHHhc---
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG---FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~---~~vi~GD~~~~~~L~~a--- 473 (663)
.++|.|. |.+|+.+++.|. ++|++|+++++|++..+...+ .+ ...+.+|.+|++..+++
T Consensus 2 ~vlItGas~giG~~la~~la----------~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLA----------AQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 4778875 899999999997 789999999999877554432 22 23467999998866431
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|...+
T Consensus 72 ~~~~~~~id~lv~~ag 87 (272)
T PRK07832 72 IHAAHGSMDVVMNIAG 87 (272)
T ss_pred HHHhcCCCCEEEECCC
Confidence 2346787776553
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.37 E-value=6.4 Score=41.85 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=84.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh--HHHHH----HHhcC-----CCEEEecCCCHHHHHh
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKE----SRKLG-----FPILYGDASRPAVLLS 472 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~--~~~~~----~~~~~-----~~vi~GD~~~~~~L~~ 472 (663)
+|.|+|. |++|..++..|.. .++..+...++++++|.++ +..+- +.+.- ...+. ..+ .
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~---~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-----~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS---GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-----E 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh---CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-----H
Confidence 5899999 9999999998861 2332223445799999987 54221 11110 01111 112 2
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHh-CCCCcEEEEecChhhH---HHHHHcC---CCeEEc
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLA-FPAIPIYARAQDMMHL---LDLKKAG---ATDAIL 530 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~-~~~~~iia~~~~~~~~---~~l~~~G---ad~vi~ 530 (663)
..+++||.||++.+. | ..|..+ +...++. +|+..++. +.||-+. -..+..| ..+|+-
T Consensus 72 ~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~~t~~~~k~sg~~p~~~vig 150 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANTNALIALKNAPNLPPKNFTA 150 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHHHHHHHHHHcCCCCHHHEEE
Confidence 346789988877654 1 234443 3445556 47755444 5676542 2345566 346776
Q ss_pred CchHHHHHHHHHHHHhcCCCHHHH
Q 006034 531 ENAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 531 p~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
-...-..++-..+-+.++++|..+
T Consensus 151 ~t~LDs~R~r~~la~~l~v~~~~V 174 (323)
T cd00704 151 LTRLDHNRAKAQVARKLGVRVSDV 174 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcCHHHc
Confidence 677777788888888888888766
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.2 Score=50.83 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|+ ..|.+|.+.|+.... +...+.+.... +-++. ++++|.+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~~----~l~el-----l~~aDiV 198 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAK----------AFGMKVIAYDPYISP-ERAAQLGVELV----SLDEL-----LARADFI 198 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEEE----cHHHH-----HhhCCEE
Confidence 3467999999999999999997 789999999985432 12223333222 22223 3467878
Q ss_pred EEEcCCHHHHHH--HHHHHHHhCCC
Q 006034 482 MIMYTDKKRTIE--AVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n~~--~~~~~r~~~~~ 504 (663)
++..+..+.+.. -......+.|+
T Consensus 199 ~l~lP~t~~t~~li~~~~l~~mk~g 223 (526)
T PRK13581 199 TLHTPLTPETRGLIGAEELAKMKPG 223 (526)
T ss_pred EEccCCChHhhcCcCHHHHhcCCCC
Confidence 777776543332 23344444444
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.5 Score=46.35 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a 473 (663)
.+.++|.|. +-+|+.+++.|. +.|++|+++.+|+++.+...+ ....++..|.+|.+..+++
T Consensus 14 gk~~lITGas~GIG~~~a~~La----------~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLA----------AAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHH
Confidence 356788875 669999999998 789999999999887655432 1356788999998876543
Q ss_pred ------CCCCCcEEEE
Q 006034 474 ------GITSPKAVMI 483 (663)
Q Consensus 474 ------~i~~a~~vv~ 483 (663)
...+.|.+|-
T Consensus 84 ~~~~~~~~~~iD~li~ 99 (313)
T PRK05854 84 GEQLRAEGRPIHLLIN 99 (313)
T ss_pred HHHHHHhCCCccEEEE
Confidence 2234565553
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.2 Score=41.45 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=46.1
Q ss_pred EcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c---CCCEEEecCCCHHHHHhcCC-CCCcE
Q 006034 409 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L---GFPILYGDASRPAVLLSAGI-TSPKA 480 (663)
Q Consensus 409 ~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~---~~~vi~GD~~~~~~L~~a~i-~~a~~ 480 (663)
||.|.++..+++.+ ..+.+++.+|.+++.++.+++ . ...++++|.++ +.+. + ++.|.
T Consensus 12 cG~G~~~~~l~~~~-----------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~-~~~~~D~ 76 (152)
T PF13847_consen 12 CGTGRLLIQLAKEL-----------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQE-LEEKFDI 76 (152)
T ss_dssp -TTSHHHHHHHHHS-----------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGC-SSTTEEE
T ss_pred CcCcHHHHHHHHhc-----------CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccc-cCCCeeE
Confidence 56678888888766 457789999999999888775 2 36788999988 3332 3 79998
Q ss_pred EEEE
Q 006034 481 VMIM 484 (663)
Q Consensus 481 vv~~ 484 (663)
|+..
T Consensus 77 I~~~ 80 (152)
T PF13847_consen 77 IISN 80 (152)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8776
|
... |
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.1 Score=38.04 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=54.4
Q ss_pred CCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc-CC--HHHHHHHHHHHHHhCCCCcEEEE
Q 006034 434 TVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY-TD--KKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~-~d--d~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+.|++|..+|.+.+. ++..+.+.-.++|.|.+.. .. .+.-..++..+|+.+|++++++-
T Consensus 26 ~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 26 KAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp HTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 679999999887654 3344444445778766655 22 24445667778889999887776
Q ss_pred ecC--hhhHHHHHH-cCCCeEEcCch
Q 006034 511 AQD--MMHLLDLKK-AGATDAILENA 533 (663)
Q Consensus 511 ~~~--~~~~~~l~~-~Gad~vi~p~~ 533 (663)
=.. ......+++ .|+|.++.-+-
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred CCchhcChHHHhccCcCcceecCCCh
Confidence 554 344455655 99999887664
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.1 Score=46.43 Aligned_cols=68 Identities=25% Similarity=0.254 Sum_probs=49.6
Q ss_pred cEEEE-cCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhc-CCCCCcEE
Q 006034 405 PVVIV-GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSA-GITSPKAV 481 (663)
Q Consensus 405 ~viI~-G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a-~i~~a~~v 481 (663)
.|+|. |.|-+|...+.+|. +.|++|+|+|.-..- .+.+.....+.++||..|.+.|++. .-.+.|+|
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll----------~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaV 71 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLL----------KTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAV 71 (329)
T ss_pred eEEEecCcchhHHHHHHHHH----------HCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEE
Confidence 46677 46999999999998 899999999985543 3333322268999999999988764 22255555
Q ss_pred E
Q 006034 482 M 482 (663)
Q Consensus 482 v 482 (663)
+
T Consensus 72 i 72 (329)
T COG1087 72 V 72 (329)
T ss_pred E
Confidence 4
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.4 Score=54.65 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCc--chHH---------HHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHH
Q 006034 401 EGSEPVVIVGFGQ--MGQV---------LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~--~g~~---------la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~ 469 (663)
..+++++|+|.|. +|+. +++.|+ +.|++++++|.||+.+..-.+.....++-..+-+++
T Consensus 552 ~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk----------~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v 621 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALR----------EAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDV 621 (1066)
T ss_pred CCCceEEEECccccccccccccchhHHHHHHHHH----------HCCCEEEEEeCCccccccccchhhheeecCCCHHHH
Confidence 3567899999987 4544 589997 899999999999987542222112233323344445
Q ss_pred HHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCC-----CcEEEEecC-hhhHHHHHHcCCC
Q 006034 470 LLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPA-----IPIYARAQD-MMHLLDLKKAGAT 526 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~-----~~iia~~~~-~~~~~~l~~~Gad 526 (663)
++-+.-++.|.++...+.+.. +..+..+.+.+.. ...+..+.| ....+.++++|+.
T Consensus 622 ~~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp 683 (1066)
T PRK05294 622 LEIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIP 683 (1066)
T ss_pred HHHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcC
Confidence 555667788988887766533 3444455555421 112223333 3455677888886
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.28 E-value=2.9 Score=44.78 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=44.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh-cCCCEEEec----------------CCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK-LGFPILYGD----------------ASR 466 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~-~~~~vi~GD----------------~~~ 466 (663)
+|.|+|+|++|+.+++.+.+ .++.+++.+ |.+++....+.+ .|+.. +|. .+.
T Consensus 3 kVaI~G~GrIGr~va~al~~---------~~d~eLvav~d~~~~~~~~la~~~G~~~-~~~~~~~~~~~~~~~i~V~~~~ 72 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAA---------QPDMELVGVAKTKPDYEARVAVEKGYPL-YVADPEREKAFEEAGIPVAGTI 72 (341)
T ss_pred EEEEECCCHHHHHHHHHHhc---------CCCcEEEEEECCChHHHHHHHHhcCCCc-cccCccccccccCCceEEcCCh
Confidence 68999999999999999872 567776665 556655554433 34332 111 112
Q ss_pred HHHHHhcCCCCCcEEEEEcCCH
Q 006034 467 PAVLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd 488 (663)
++.+ +++|.|+.+|+.+
T Consensus 73 ~el~-----~~vDVVIdaT~~~ 89 (341)
T PRK04207 73 EDLL-----EKADIVVDATPGG 89 (341)
T ss_pred hHhh-----ccCCEEEECCCch
Confidence 2222 4689999998875
|
|
| >TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP | Back alignment and domain information |
|---|
Probab=87.23 E-value=25 Score=39.27 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=49.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+++++|+|.|..|+.+++.+++ ..+.+++++ .+|.|++..... -.+.+++ |+ .| ..+...-.++|.+
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~-------~~~~g~~vvGfidd~~~~~~~~-i~g~pVl-g~-~~--l~~~i~~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQS-------NPQLGLRPLAVVDTDPAASGRL-LTGLPVV-GA-DD--ALRLYARTRYAYV 192 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhh-------CccCCcEEEEEEeCCccccccc-cCCCccc-Ch-hH--HHHHHHhCCCCEE
Confidence 4579999999999999999962 012345544 467665432211 1345543 44 32 2222222456777
Q ss_pred EEEcCCH--HHHHHHHHHHHHhCC
Q 006034 482 MIMYTDK--KRTIEAVQRLRLAFP 503 (663)
Q Consensus 482 v~~~~dd--~~n~~~~~~~r~~~~ 503 (663)
+++.++. +.-..+...+++.+.
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHF 216 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCC
Confidence 7887743 233344555665544
|
This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.3 Score=44.85 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=49.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC---CCEEEecCCCHHHHHhc---
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG---FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~---~~vi~GD~~~~~~L~~a--- 473 (663)
.++|.|. +.+|+.+++.|. + |++|+++++++++.+.+.+ .+ ..++..|.+|++-.+++
T Consensus 2 ~vlItGas~GIG~aia~~l~----------~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC----------H-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh----------C-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 4778887 459999999995 4 8999999999988765533 22 45778899998776542
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+-|.+|..
T Consensus 71 ~~~~~g~id~lv~n 84 (246)
T PRK05599 71 TQELAGEISLAVVA 84 (246)
T ss_pred HHHhcCCCCEEEEe
Confidence 12355666543
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.1 Score=50.33 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=66.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|.|..|+.++..|. +.|.++.+.++++++.+.+.+. +..+ .+.+.+. ...++|.+
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~----------~~G~~V~i~~R~~~~~~~la~~~~~~~-----~~~~~~~--~l~~~DiV 394 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLA----------RAGAELLIFNRTKAHAEALASRCQGKA-----FPLESLP--ELHRIDII 394 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhccce-----echhHhc--ccCCCCEE
Confidence 357999999999999999998 7888999999999988877653 2111 1112222 25689999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh---hHHHHHHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM---HLLDLKKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~---~~~~l~~~Gad~vi~p~~ 533 (663)
|.+++.+.. +. .... . .++=.+.++. ..+..++.|+ .+++-..
T Consensus 395 InatP~g~~-~~-----~~l~-~-~v~D~~Y~P~~T~ll~~A~~~G~-~~~~G~~ 440 (477)
T PRK09310 395 INCLPPSVT-IP-----KAFP-P-CVVDINTLPKHSPYTQYARSQGS-SIIYGYE 440 (477)
T ss_pred EEcCCCCCc-ch-----hHHh-h-hEEeccCCCCCCHHHHHHHHCcC-EEECcHH
Confidence 999887631 11 1111 1 2333333332 4455667787 4556654
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=87.15 E-value=4.4 Score=42.01 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=63.2
Q ss_pred chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC---H-HHHH-hcCCCCCcEEEEEcCCH
Q 006034 414 MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR---P-AVLL-SAGITSPKAVMIMYTDK 488 (663)
Q Consensus 414 ~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~---~-~~L~-~a~i~~a~~vv~~~~dd 488 (663)
+|..++-.|. +.|++|.+++++ ++.+.+++.|..+...+... + .+.. ....+.+|.+++++...
T Consensus 2 iG~~~a~~L~----------~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~ 70 (293)
T TIGR00745 2 VGSLYGAYLA----------RAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY 70 (293)
T ss_pred chHHHHHHHH----------hCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch
Confidence 5788888897 789999999997 67777887776543211110 0 1111 01245899999998875
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH-cCCCe
Q 006034 489 KRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK-AGATD 527 (663)
Q Consensus 489 ~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~-~Gad~ 527 (663)
...-.+......++++..|+...|--.+.+.+.+ .+.+.
T Consensus 71 ~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~ 110 (293)
T TIGR00745 71 QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARR 110 (293)
T ss_pred hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccC
Confidence 4322222333445677677777777666666655 34433
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=1.4 Score=44.98 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=51.0
Q ss_pred CcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh--HHHHHHHh---cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRK---LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~--~~~~~~~~---~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. +.+|+.+++.|. ++|++|++.++++ +..+.+.+ .....+..|.+|++-.+++
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la----------~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 77 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQ----------EQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLAD 77 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHH----------HCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHH
Confidence 57889996 689999999997 7899999998664 44454443 2356788999999866542
Q ss_pred ----CCCCCcEEEE
Q 006034 474 ----GITSPKAVMI 483 (663)
Q Consensus 474 ----~i~~a~~vv~ 483 (663)
...+.|.+|.
T Consensus 78 ~~~~~~g~iD~li~ 91 (256)
T PRK07889 78 RVREHVDGLDGVVH 91 (256)
T ss_pred HHHHHcCCCcEEEE
Confidence 2345676655
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.11 E-value=3.1 Score=43.04 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=53.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHh-cCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLS-AGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~-a~i~~a~ 479 (663)
.+.++|.|.|.+|...++.++ ..|.+ |+++|.++++.+.+++.|...+. |..+ .+.+++ .+-..+|
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak----------~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAA----------AAGAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCC
Confidence 457999999999999999886 67886 88899999999888887764432 2222 222222 2334689
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.++=+++.+.
T Consensus 190 ~vid~~G~~~ 199 (280)
T TIGR03366 190 VALEFSGATA 199 (280)
T ss_pred EEEECCCChH
Confidence 8887776654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 663 | ||||
| 3eyw_A | 413 | Crystal Structure Of The C-terminal Domain Of E. Co | 3e-13 |
| >pdb|3EYW|A Chain A, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc In Complex With Keff Length = 413 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 663 | |||
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 3e-39 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 2e-33 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 1e-27 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 9e-26 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 3e-20 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 8e-20 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 8e-18 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 4e-14 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 5e-04 |
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Length = 413 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 3e-39
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 14/226 (6%)
Query: 402 GSE--PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 459
GS V+I GFG+ GQ+ LL + G V D +P ++ RK G +
Sbjct: 1 GSHGMRVIIAGFGRFGQITGRLLLS----------SGVKMVVLDHDPDHIETLRKFGMKV 50
Query: 460 LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 519
YGDA+R +L SAG + ++ D + ++ + ++ FP + I ARA+D+ H +
Sbjct: 51 FYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIR 110
Query: 520 LKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQ 579
L++AG E E +L+ G L+ G+ + + R +E+ ++D
Sbjct: 111 LRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDT 170
Query: 580 E--FDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDA 623
+ + K +++I+ ++ S + G A
Sbjct: 171 KARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMA 216
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Length = 140 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-33
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Query: 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG 462
++VG+G++G +L L A P V + + + V E R+ G + G
Sbjct: 7 CNHALLVGYGRVGSLLGEKLLA----------SDIPLVVIETSRTRVDELRERGVRAVLG 56
Query: 463 DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 522
+A+ ++ A + K +++ + E V R P I I ARA + + +
Sbjct: 57 NAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITE 116
Query: 523 AGATDAILENAETSLQLGSKLLK 545
GA ++ E + + L
Sbjct: 117 RGANQVVMGEREIARTMLELLET 139
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Length = 183 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-27
Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 14/191 (7%)
Query: 365 LSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSA 424
L+ + G+W + +K D++ G V+I+G G++G + L A
Sbjct: 5 LNRLGHKIYQHSGKWLQETAAEKLNQRDQLINP----GHAQVLILGMGRIGTGAYDELRA 60
Query: 425 PLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKAVMI 483
G + ++ ++ R G ++ GDA+ P K V++
Sbjct: 61 ---------RYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111
Query: 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKL 543
+ A+++L+ I A A+ L L ++G A +E +
Sbjct: 112 AMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHV 171
Query: 544 LKGFGVMSDDV 554
K +
Sbjct: 172 CKQLEPQFTSI 182
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Length = 234 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 9e-26
Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 14/211 (6%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
VVI G+ + L G + +V K+ + G ++GD +
Sbjct: 12 VVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANFVHGDPT 59
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 525
R + L A + +AV++ TI + +R ++ I A A+ ++ L+ AGA
Sbjct: 60 RVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGA 119
Query: 526 TDAILENAETSLQLGSKLLKGFGV--MSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDI 583
I + + + G+ + D + + I L + DI
Sbjct: 120 DQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADI 179
Query: 584 MKPLQVRVADIVEAEKTIPSTSNDDKLSRED 614
V + + ++ I D D
Sbjct: 180 HDVTGVIIIGVGRGDELIIDPPRDYSFRAGD 210
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Length = 153 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 3e-20
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 14/144 (9%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----SVVKESRKLGFPILY 461
++ G + L+ G P +++ ++
Sbjct: 6 FIVCGHSILAINTILQLNQ----------RGQNVTVISNLPEDDIKQLEQRLGDNADVIP 55
Query: 462 GDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 521
GD++ +VL AGI +A++ + + V + + D +L +K
Sbjct: 56 GDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK 115
Query: 522 KAGATDAILENAETSLQLGSKLLK 545
+ S L L
Sbjct: 116 MVHPDIILSPQLFGSEILARVLNG 139
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 8e-20
Identities = 58/337 (17%), Positives = 116/337 (34%), Gaps = 28/337 (8%)
Query: 283 IDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVF 342
+ IE++ + P VL + A I++ L + G G E G + + FV
Sbjct: 3 LVIEIIRKHLPRVLKVPATRILLLVLAVIIYG-TAGFHFIE----GESWTVSLYWTFVTI 57
Query: 343 SLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 399
+ +G P + V ++ + + + R I+ + K+ +++
Sbjct: 58 A---TVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN---REQMKLMGLID 111
Query: 400 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 459
S VVI G+ + L G + +V K+ + G
Sbjct: 112 VAKSRHVVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANF 159
Query: 460 LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 519
++GD +R + L A + +AV++ TI + +R ++ I A A+ ++
Sbjct: 160 VHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQ 219
Query: 520 LKKAGATDAILENAETSLQLGSKLLKGF--GVMSDDVTFLRQLVRNSMEIQAQEVLSQKD 577
L+ AGA I + + + G+ + D + + I L
Sbjct: 220 LRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVS 279
Query: 578 DQEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSRED 614
+ DI V + + ++ I D D
Sbjct: 280 VLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGD 316
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 8e-18
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
+++G G L L+A G +A D + ++ GF + D +
Sbjct: 9 YIVIGSEAAGVGLVRELTA----------AGKKVLAVDKSKEKIELLEDEGFDAVIADPT 58
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 525
+ S + AV+I +D + ++ ++ LR + + R + ++AGA
Sbjct: 59 DESFYRSLDLEGVSAVLITGSDDEFNLKILKALR-SVSDVYAIVRVSSPKKKEEFEEAGA 117
Query: 526 TDAILENAETSLQLGSKLLKG 546
+L K+ K
Sbjct: 118 NLVVLVADAVKQAFMDKIKKM 138
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-14
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 10/140 (7%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
++G G+ G + L +G +A D+N V + +A+
Sbjct: 9 FAVIGLGRFGGSIVKELHR----------MGHEVLAVDINEEKVNAYASYATHAVIANAT 58
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 525
LLS GI + + V++ + L I+ +AQ+ H L+K GA
Sbjct: 59 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGA 118
Query: 526 TDAILENAETSLQLGSKLLK 545
I + +++ L
Sbjct: 119 DRIIHPEKDMGVKIAQSLSD 138
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Length = 155 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE-SRKLGFPILYGDA 464
+VI G G++G ++ANL S S G++V V D N + + + GDA
Sbjct: 22 IVIFGCGRLGSLIANLAS------SSGHSV----VVVDKNEYAFHRLNSEFSGFTVVGDA 71
Query: 465 SRPAVLLSAGI 475
+ L G+
Sbjct: 72 AEFETLKECGM 82
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 663 | |||
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 99.94 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 99.93 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 99.93 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 99.92 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 99.92 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 99.91 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 99.9 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 99.9 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 99.89 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 99.86 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 99.86 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 99.84 | |
| 1zcd_A | 388 | Na(+)/H(+) antiporter 1; membrane protein; 3.45A { | 99.84 | |
| 3naf_A | 798 | Calcium-activated potassium channel subunit alpha; | 99.73 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 99.7 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 99.7 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 99.69 | |
| 3mt5_A | 726 | Potassium large conductance calcium-activated CHA | 99.68 | |
| 4hpf_A | 722 | Potassium channel subfamily U member 1; PH-gated, | 99.37 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.19 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 97.66 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.57 | |
| 1vct_A | 205 | Hypothetical protein PH0236; helix rich, structura | 97.56 | |
| 4hpf_A | 722 | Potassium channel subfamily U member 1; PH-gated, | 97.33 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 97.17 | |
| 3zux_A | 332 | Transporter, ASBTNM; transport protein, membrane p | 97.16 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.07 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 97.06 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.04 | |
| 3naf_A | 798 | Calcium-activated potassium channel subunit alpha; | 97.02 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.01 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.96 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.94 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.92 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.91 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.91 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.88 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.88 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.85 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.84 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.79 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.78 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.77 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.77 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.77 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.74 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.74 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.73 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.73 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.69 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.67 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.65 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.65 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.59 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.58 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 96.56 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.56 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.54 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.52 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.51 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.5 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.49 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.48 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.48 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.43 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.42 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.4 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.4 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.29 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.28 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.27 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.25 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.25 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.23 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 96.18 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.17 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.12 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.09 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 96.05 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.05 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.03 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 95.96 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 95.96 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 95.93 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.89 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.86 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.86 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.86 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 95.78 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.78 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.77 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.66 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 95.63 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.63 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.62 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 95.58 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.58 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 95.58 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.57 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 95.54 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.47 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.47 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 95.47 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.47 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 95.39 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.37 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 95.37 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.34 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 95.32 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.31 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 95.31 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 95.31 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.27 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 95.27 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 95.27 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 95.25 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 95.22 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 95.2 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.2 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.19 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.15 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.12 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 95.08 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 95.08 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.07 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 95.05 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.05 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 95.02 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 95.01 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.01 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 94.96 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 94.94 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 94.93 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 94.9 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 94.9 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 94.83 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.81 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.79 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 94.75 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 94.7 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.66 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 94.66 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.66 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 94.65 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 94.62 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.61 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.6 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 94.59 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 94.52 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.52 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 94.49 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.45 | |
| 3mt5_A | 726 | Potassium large conductance calcium-activated CHA | 94.42 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 94.39 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 94.39 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 94.29 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 94.23 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.22 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 94.16 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 94.12 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 94.09 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 94.04 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.03 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 94.02 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 94.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 93.99 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 93.98 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.97 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 93.94 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 93.92 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 93.91 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 93.88 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 93.87 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 93.85 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 93.83 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.83 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 93.79 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 93.79 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 93.78 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 93.73 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.71 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.7 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 93.7 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 93.7 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 93.68 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 93.66 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 93.64 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.63 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 93.61 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 93.58 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 93.57 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.52 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 93.51 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 93.49 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 93.47 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 93.46 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.46 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 93.44 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 93.38 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 93.37 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 93.36 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 93.36 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 93.36 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 93.35 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.32 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 93.32 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 93.29 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 93.27 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 93.27 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 93.22 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 93.21 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 93.17 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.17 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 93.16 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 93.16 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 93.15 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 93.14 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.14 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 93.12 | |
| 3kto_A | 136 | Response regulator receiver protein; PSI-II,struct | 93.11 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.11 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 93.08 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 93.07 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 93.06 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 93.05 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 93.01 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 93.01 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 93.01 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 93.0 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 92.99 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 92.98 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 92.97 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 92.97 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 92.97 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 92.94 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 92.91 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 92.91 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 92.9 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 92.88 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 92.87 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 92.86 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 92.86 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 92.86 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 92.86 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 92.85 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 92.81 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 92.8 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 92.79 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 92.78 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 92.78 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 92.76 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 92.74 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 92.73 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 92.73 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 92.71 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 92.71 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 92.71 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 92.7 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 92.7 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 92.68 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 92.66 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 92.66 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 92.66 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 92.64 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 92.64 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 92.63 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 92.62 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 92.62 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 92.6 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 92.59 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 92.56 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.54 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 92.54 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 92.5 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 92.5 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 92.49 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 92.49 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 92.48 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.48 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 92.45 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.43 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 92.43 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 92.43 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 92.41 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 92.39 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 92.39 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 92.38 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.36 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 92.32 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 92.31 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 92.31 | |
| 3hdg_A | 137 | Uncharacterized protein; two-component sensor acti | 92.3 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 92.3 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 92.27 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 92.27 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 92.24 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 92.24 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 92.24 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 92.22 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 92.22 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.22 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 92.21 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 92.21 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 92.16 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 91.39 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 92.15 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.12 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 92.12 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.12 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 92.12 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 92.11 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.09 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 92.07 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 92.07 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 92.07 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 92.06 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 92.06 | |
| 4dad_A | 146 | Putative pilus assembly-related protein; response | 92.03 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 92.03 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 92.02 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 92.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 91.99 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 91.98 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 91.98 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 91.96 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 91.95 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 91.94 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 91.92 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 91.91 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 91.9 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 91.9 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 91.9 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 91.89 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 91.86 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 91.85 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 91.85 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 91.83 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 91.82 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 91.82 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.81 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 91.81 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 91.79 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 91.79 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 91.78 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.78 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 91.77 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.76 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 91.71 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.71 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 91.69 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 91.67 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 91.67 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 91.65 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 91.65 | |
| 1tmy_A | 120 | CHEY protein, TMY; chemotaxis, phosphoryl transfer | 91.64 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 91.64 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 91.61 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 91.61 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 91.6 | |
| 3lua_A | 140 | Response regulator receiver protein; two-component | 91.58 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 91.57 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.56 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 91.56 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 91.55 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 91.53 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 91.53 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 91.52 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 91.49 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 91.49 | |
| 1dbw_A | 126 | Transcriptional regulatory protein FIXJ; doubly wo | 91.49 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 91.49 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 91.48 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 91.48 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 91.47 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 91.43 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 91.42 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 91.42 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 91.41 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 91.38 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 91.34 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 91.33 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.33 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 91.33 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.32 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 91.3 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 91.29 | |
| 3gt7_A | 154 | Sensor protein; structural genomics, signal receiv | 91.29 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 91.29 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 91.28 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 91.25 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 91.24 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 91.24 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 91.23 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 91.19 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 91.18 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 91.17 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 91.13 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 91.12 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 91.09 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 91.07 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 91.05 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 91.04 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 91.04 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 91.03 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 91.02 | |
| 2pln_A | 137 | HP1043, response regulator; signaling protein; 1.8 | 91.01 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 90.97 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 90.96 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 90.96 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 90.94 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 90.94 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 90.93 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 90.92 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 90.91 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 90.85 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 90.83 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 90.8 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 90.79 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 90.79 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 90.78 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 90.77 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 90.74 | |
| 2qv0_A | 143 | Protein MRKE; structural genomics, transcription, | 90.72 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 90.71 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.69 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 90.64 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 90.61 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 90.58 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 90.55 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 90.55 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 90.53 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 90.49 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 90.43 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 90.42 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 90.36 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 90.34 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 90.33 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 90.31 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 90.3 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 90.3 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 90.29 | |
| 3hdv_A | 136 | Response regulator; PSI-II, structural genomics, P | 90.25 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 90.25 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 90.2 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.16 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 90.14 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 90.13 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 90.1 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 90.09 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 90.08 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 90.08 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 90.05 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 90.05 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 90.03 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 90.01 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 90.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 90.0 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 89.99 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 89.94 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 89.88 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 89.87 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 89.86 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.85 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 89.82 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 89.81 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 89.8 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 89.8 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 89.74 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 89.71 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 89.69 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 89.69 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 89.68 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 89.67 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 89.67 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 89.66 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 89.62 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 89.61 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 89.54 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 89.54 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 89.52 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 89.5 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 89.5 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 89.47 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 89.47 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 89.44 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 89.39 | |
| 3snk_A | 135 | Response regulator CHEY-like protein; P-loop conta | 89.39 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 89.38 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 89.38 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 89.37 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.35 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.35 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 89.26 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.25 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 89.24 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 89.22 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 89.22 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 89.19 | |
| 2j48_A | 119 | Two-component sensor kinase; pseudo-receiver, circ | 89.17 |
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-27 Score=248.93 Aligned_cols=211 Identities=18% Similarity=0.146 Sum_probs=170.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++|++|||+|++|+.+++.|. +.|+ |+++|.|+++++ +++.+.++++||++|+++|+++|+++||.++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~----------~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi 182 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELR----------GSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVI 182 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGG----------GSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred cCCEEEECCcHHHHHHHHHHH----------hCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEE
Confidence 679999999999999999997 7788 999999999999 8889999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 562 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 562 (663)
++++||+.|+.++..+|+++|+.++++|++++++.+.++++|+|.|++|+.+++..+++.+.+ |...+.+.+.++
T Consensus 183 ~~~~~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~~G~d~vi~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~ 257 (336)
T 1lnq_A 183 VDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDD-----GYEAMFVQDVLA 257 (336)
T ss_dssp ECCSSHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHHTTCSEEECHHHHHHHHHHHTSSC-----SHHHHHHHHHTS
T ss_pred EcCCccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChhHhHHHHHHHHHhC-----ccHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999998887 665555446666
Q ss_pred cccccchhhhcccCCc-chhcccccccchhhhhhhccCCCCCCCcccccCCCCCCCCcCCCCCCceEEEeecC
Q 006034 563 NSMEIQAQEVLSQKDD-QEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGT 634 (663)
Q Consensus 563 ~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 634 (663)
.+++..+.|+.++.+. ..++.+++++.+... +...-.-..+++....|++++++++||++.++|.+..
T Consensus 258 ~~~~~~l~e~~v~~~s~~~Gk~l~el~l~~~~----~~~ii~i~r~~~~~~~P~~~~~l~~gD~liv~g~~~~ 326 (336)
T 1lnq_A 258 EESTRRMVEVPIPEGSKLEGVSVLDADIHDVT----GVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEE 326 (336)
T ss_dssp SCSSCEEEEEECCSSCSSTTCBHHHHCHHHHH----CCEEEEEECSSCEESSCCTTCBCCSSCEEEEEECHHH
T ss_pred CcCCceEEEEEeCCCCCcCCCCHHHccccccc----CeEEEEEEECCEEEECcCCCcEEcCCCEEEEEECHHH
Confidence 6557777787776532 123444443322100 0000000002334445999999999999999998765
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=250.60 Aligned_cols=214 Identities=14% Similarity=0.172 Sum_probs=128.5
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+.++|++|||+|++|+.+++.|. +.+++|++||.|+++++.+++. +.++++||++|+++|+++|+++|+
T Consensus 125 ~~~~hviI~G~g~~g~~la~~L~----------~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~ 194 (565)
T 4gx0_A 125 DTRGHILIFGIDPITRTLIRKLE----------SRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAAR 194 (565)
T ss_dssp TCCSCEEEESCCHHHHHHHHHTT----------TTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCS
T ss_pred ccCCeEEEECCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCC
Confidence 57899999999999999999997 7899999999999999999998 999999999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 559 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~ 559 (663)
.+++ +.+|+.|+.++.++|+++ +.+++||++++++.+.++++|+|+|++|+.+++..+++.+.. |... .+
T Consensus 195 ~vi~-t~~D~~n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~-----p~~~---~~ 264 (565)
T 4gx0_A 195 SIIA-NLSDPDNANLCLTVRSLC-QTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATT-----CGAL---AH 264 (565)
T ss_dssp EEEE-CSCHHHHHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC--------------
T ss_pred EEEE-eCCcHHHHHHHHHHHHhc-CceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcc-----cccc---cc
Confidence 9887 889999999999999999 889999999999999999999999999999999999999988 6543 22
Q ss_pred HHhcccccchhhhcccCCc-chhcccccccchhhhhhhccCCCCCCCcccccCCCCCCCCcCCCCCCceEEEeecCCCcc
Q 006034 560 LVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTNNFL 638 (663)
Q Consensus 560 ~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 638 (663)
.+...++..+.|+.++ +. ..++++.+++.+... +..-..-..+++.. .|++++++++||++++.|.+..-+-+
T Consensus 265 ~~~~~~~~~l~e~~v~-~s~l~G~~l~el~~~~~~----~~~vi~i~r~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~ 338 (565)
T 4gx0_A 265 ILDSFGNLQIAELPVH-GTPFAGKTIGESGIRQRT----GLSIIGVWERGSLT-TPQRETVLTEQSLLVLAGTKSQLAAL 338 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccCCceEEEEEEC-CCccCCCCHHHcCcchhc----CCEEEEEEECCEEe-CCCCCcEeCCCCEEEEEeCHHHHHHH
Confidence 2334567778888776 32 223444443322110 00000001134445 89999999999999999988776544
Q ss_pred cc
Q 006034 639 DQ 640 (663)
Q Consensus 639 ~~ 640 (663)
.+
T Consensus 339 ~~ 340 (565)
T 4gx0_A 339 EY 340 (565)
T ss_dssp --
T ss_pred HH
Confidence 33
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=225.17 Aligned_cols=209 Identities=18% Similarity=0.145 Sum_probs=166.9
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
+.++|++|||+|++|+.+++.|. +.|+ |+++|+|+++++.+. .+..+++||++|+++|+++++++||.
T Consensus 7 ~~~~~viI~G~G~~G~~la~~L~----------~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~ 74 (234)
T 2aef_A 7 AKSRHVVICGWSESTLECLRELR----------GSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARA 74 (234)
T ss_dssp ---CEEEEESCCHHHHHHHHHST----------TSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSE
T ss_pred CCCCEEEEECCChHHHHHHHHHH----------hCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcE
Confidence 46789999999999999999997 7788 999999999998888 78999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQL 560 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 560 (663)
+++++++|+.|+.++..+|+++|+++++++++++++.+.++++|+|.+++|+.++|..+++.+.. |...+.+.+.
T Consensus 75 vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~-----~~~~~~~~~~ 149 (234)
T 2aef_A 75 VIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDD-----GYEAMFVQDV 149 (234)
T ss_dssp EEECCSCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHTSSC-----SHHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHHCCCCEEECHHHHHHHHHHHHHcC-----ccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877 6655544355
Q ss_pred HhcccccchhhhcccCCc-chhcccccccchh------hhhhhccCCCCCCCcccccCCCCCCCCcCCCCCCceEEEeec
Q 006034 561 VRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRV------ADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNG 633 (663)
Q Consensus 561 ~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 633 (663)
++.+++..+.|+.++.+. ...+++.+++.+. ..+.| +++....|++++++++||+++++|...
T Consensus 150 ~~~~~~~~~~e~~V~~~s~~~Gk~l~el~~~~~~~~~vi~i~R----------~~~~~~~p~~~~~l~~GD~l~v~g~~~ 219 (234)
T 2aef_A 150 LAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR----------GDELIIDPPRDYSFRAGDIILGIGKPE 219 (234)
T ss_dssp HC---CCEEEEEECCTTBTTTTCBHHHHCHHHHHCCEEEEEEE----------TTEEEESCCTTCBCCTTCEEEEEECHH
T ss_pred hcCCCCceEEEEEECCCCccCCCCHHHhhhhhhcCeEEEEEEE----------CCeEEeCCCCCCEECCCCEEEEEECHH
Confidence 555445667777766432 1233333332221 11111 223333489999999999999999876
Q ss_pred CCC
Q 006034 634 TNN 636 (663)
Q Consensus 634 ~~~ 636 (663)
.-+
T Consensus 220 ~l~ 222 (234)
T 2aef_A 220 EIE 222 (234)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=241.79 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=121.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+..++++|+|+|++|..+|+.|+ ++++|++||.|+++++.+++ .+..+++||++|+++|+++|++++
T Consensus 233 ~~~~~v~I~GgG~ig~~lA~~L~-----------~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~ 301 (461)
T 4g65_A 233 KPYRRIMIVGGGNIGASLAKRLE-----------QTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQV 301 (461)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHT-----------TTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGC
T ss_pred ccccEEEEEcchHHHHHHHHHhh-----------hcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhh
Confidence 45678999999999999999995 46899999999999999987 578899999999999999999999
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
|+++++|+||+.|+++|+.||+++++ ++++++|++++.+.+++.|+|.+++|+..++..+.+++.+
T Consensus 302 D~~ia~T~~De~Ni~~~llAk~~gv~-kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i~~ 367 (461)
T 4g65_A 302 DVFIALTNEDETNIMSAMLAKRMGAK-KVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHVRR 367 (461)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHHHH
T ss_pred cEEEEcccCcHHHHHHHHHHHHcCCc-cccccccccchhhhhhccccceeeCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999987 9999999999999999999999999997666666555544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=199.27 Aligned_cols=136 Identities=21% Similarity=0.311 Sum_probs=130.5
Q ss_pred cCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 400 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 400 ~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.+.++|++|||+|++|+.+++.|. +.|++|+++|.|+++++.+++.+..+++||++|+++|+++++++||
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~----------~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad 73 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLL----------ASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAK 73 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCS
T ss_pred ccCCCCEEEECcCHHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCC
Confidence 367899999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
.+++++++|+.|..++..+|+++|+.++++|++++++.+.++++|+|.|++|+.+++.++++.+.+
T Consensus 74 ~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~a~~i~~~l~~ 139 (140)
T 3fwz_A 74 WLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLET 139 (140)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHHHHHHHHHC
T ss_pred EEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCCEEECchHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999988764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=232.80 Aligned_cols=161 Identities=28% Similarity=0.465 Sum_probs=152.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++||+|||+|++|+.+++.|. +.|++|++||.|+++++.+++.|.++++||++|+++|+++|+++||.+
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~----------~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLL----------SSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEE
Confidence 4579999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLV 561 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 561 (663)
|++++||+.|+.++..+|+++|+++|++|++++++...|+++|||.||.|+.++|.+++++++..+|+|+..+....+.+
T Consensus 73 iv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~~Gad~Vi~~~~~~a~~la~~~L~~lg~~~~~~~~~~~~~ 152 (413)
T 3l9w_A 73 INAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVF 152 (413)
T ss_dssp EECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHTTCSSCEETTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcccccchhhh
Q 006034 562 RNSMEIQAQEV 572 (663)
Q Consensus 562 ~~~~~~~~~e~ 572 (663)
|+.++..+.+.
T Consensus 153 r~~~~~~~~~~ 163 (413)
T 3l9w_A 153 RRFNIQMVEEM 163 (413)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHHHHHH
Confidence 87765555444
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=216.16 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=164.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|||+|++|+.+++.|. +.|++|+++|.|+++++.+.+ .+..+++||++|++.|+++++++||.+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~----------~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 71 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSML----------SRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVI 71 (218)
T ss_dssp CEEEECCHHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEE
Confidence 6999999999999999998 789999999999999998765 58899999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRN 563 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~ 563 (663)
++++|+.|..++..+|+++|..++++|++++++.+.++++|+|.|++|+.+++..+++.+.. |...+.+ ..
T Consensus 72 ~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~~~~~~~l~~~~~~-----~~~~~~~----~~ 142 (218)
T 3l4b_C 72 LTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNLTTLITNTVEALIFP-----DEFSSII----PL 142 (218)
T ss_dssp CCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCHHHHHHHHHHHHHCT-----TSCEECS----CC
T ss_pred ecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECHHHHHHHHHHHHhcc-----CCceEEE----Ee
Confidence 99999999999999999999989999999999999999999999999999999999988866 4332221 22
Q ss_pred ccccchhhhcccCCc-chhcccccccchh----hhhhhccCCCCCCCcccccCCCCCCCCcCCCCCCceEEEeecCC
Q 006034 564 SMEIQAQEVLSQKDD-QEFDIMKPLQVRV----ADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTN 635 (663)
Q Consensus 564 ~~~~~~~e~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 635 (663)
.++..+.|+.++.+. ...+++.+++.+. ..+.| +++.. .|+++++|++||+++++|.+..-
T Consensus 143 ~~~~~~~e~~v~~~s~~~gk~l~el~~~~~~~i~~i~R----------~~~~~-~p~~~~~l~~gD~l~v~g~~~~~ 208 (218)
T 3l4b_C 143 EQGIEFLSVNVEEDSPVVGKKLKDLPLPRDSIIAAIVR----------GGVLV-VPRGDTEILSGDKLYVIVSAEAK 208 (218)
T ss_dssp STTEEEEEEECCTTCSSTTCBTTTSCCCTTEEEEEEEE----------SSCEE-CCCTTCBCCTTEEEEEEEEGGGH
T ss_pred CCCcEEEEEEECCCCcccCCCHHHCCCCCCcEEEEEEE----------CCEEE-cCCCCCEECCCCEEEEEECHHHH
Confidence 334777787776532 2244444443221 11111 22222 49999999999999999987653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-24 Score=234.11 Aligned_cols=208 Identities=15% Similarity=0.145 Sum_probs=156.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
||+|||+|++|+.+|+.|. ++|++|++||.|+++++.+.+ .+..+++||++|+++|++||+++||.+++
T Consensus 5 ~iiI~G~G~vG~~la~~L~----------~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 5 KIIILGAGQVGGTLAENLV----------GENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp EEEEECCSHHHHHHHHHTC----------STTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 7999999999999999997 789999999999999999876 58999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH------HcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHH
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK------KAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFL 557 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~------~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~ 557 (663)
+|+||+.|+.+|+.||+++|..++++|++++++....+ ..|+|.+|+|+.+++..+.+.+.. |...+..
T Consensus 75 ~t~~De~Nl~~~~~Ak~~~~~~~~iar~~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~-----p~~~~~~ 149 (461)
T 4g65_A 75 VTNTDETNMAACQVAFTLFNTPNRIARIRSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQY-----PGALQVV 149 (461)
T ss_dssp CCSCHHHHHHHHHHHHHHHCCSSEEEECCCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTS-----TTCSEEE
T ss_pred EcCChHHHHHHHHHHHHhcCCccceeEeccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccC-----CCeEEEE
Confidence 99999999999999999999989999999998754322 379999999999888887777655 4222111
Q ss_pred HHHHhcccccchhhhcccCCcchhcccccccchhhhhhhccCCCCCCCc---ccccCCCCCCCCcCCCCCCceEEEeecC
Q 006034 558 RQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKTIPSTSN---DDKLSREDNTDTAGEDAKGVLYCELNGT 634 (663)
Q Consensus 558 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 634 (663)
--.++..++.++..+.+. .+ .+....++.+...+...... .+.-...|+++|++++||+|.|++....
T Consensus 150 ---~f~~g~~~l~e~~v~~~s----~l--~g~~l~~l~~~~p~~~~~I~aI~R~g~~iiP~g~t~i~~gD~v~~i~~~~~ 220 (461)
T 4g65_A 150 ---SFAEEKVSLVAVKAYYGG----PL--VGNALSALREHMPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNH 220 (461)
T ss_dssp ---EETTTTEEEEEEECCTTS----SS--TTCBHHHHHHTSTTSCEEEEEEEETTEEECCCTTCBCCTTCEEEEEEETTT
T ss_pred ---EeccceEEEEEEEecCCC----ee--cCCcHHHHHhhCCCCceEEEEEEECCeeccCCCCceecCCCEEEEEeccch
Confidence 011245566666554321 11 12233333321111111111 1222456999999999999999998765
Q ss_pred CC
Q 006034 635 NN 636 (663)
Q Consensus 635 ~~ 636 (663)
-+
T Consensus 221 i~ 222 (461)
T 4g65_A 221 IR 222 (461)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-24 Score=240.29 Aligned_cols=198 Identities=20% Similarity=0.236 Sum_probs=123.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|++|||+|++|+.+++.|. +.|++|++||.|+++++.+. ++++||++|+++|+++|+++||.+++
T Consensus 349 ~~viIiG~G~~G~~la~~L~----------~~g~~v~vid~d~~~~~~~~----~~i~gD~t~~~~L~~agi~~ad~vi~ 414 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLD----------RKPVPFILIDRQESPVCNDH----VVVYGDATVGQTLRQAGIDRASGIIV 414 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEEESSCCSSCCSS----CEEESCSSSSTHHHHHTTTSCSEEEE
T ss_pred CCEEEECCCHHHHHHHHHHH----------HCCCCEEEEECChHHHhhcC----CEEEeCCCCHHHHHhcCccccCEEEE
Confidence 89999999999999999998 78999999999999987543 89999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRN 563 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~ 563 (663)
+++||+.|+.+++.+|+++|+++++||++++++.+.++++|+|.|++|+..++..+++.+.. ++..+.
T Consensus 415 ~~~~d~~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~~~~i~~~~~~-----~~~~~~------- 482 (565)
T 4gx0_A 415 TTNDDSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEH-----KESAFL------- 482 (565)
T ss_dssp CCSCHHHHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHHTCSEEEEHHHHHHHHHHHHHHC-----C------------
T ss_pred ECCCchHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEccchHHHHHHHHHhcc-----hhhhhh-------
Confidence 99999999999999999999999999999999999999999999999999999999998875 433221
Q ss_pred ccccchhhhcccCCcchhcccccccch------hhhhhhccCCCCCCCcccccCCCCCCCCcCCCCCCceEEEeecCCC
Q 006034 564 SMEIQAQEVLSQKDDQEFDIMKPLQVR------VADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTNN 636 (663)
Q Consensus 564 ~~~~~~~e~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 636 (663)
.+++...++..++. ..++++++++.+ ...+.|.+ +++....|++++++|+||++++.|.+..-+
T Consensus 483 ~~~~~~~~v~~~s~-~~Gk~l~el~l~~~~~~~v~aI~R~~--------~~~~~~~p~~~~~l~~GD~liv~g~~~~i~ 552 (565)
T 4gx0_A 483 SEGMAVFRRPLPPA-MAGKTIAETRLRPLTGCSIVAIEAPD--------RADILISPPPETILAEGARLILIGTSEQEK 552 (565)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hcCeEEEEEcCCCC-cCCCCHHHcchhhhcCCEEEEEEeCC--------CCceEECcCCCCEECCCCEEEEEECHHHHH
Confidence 22333344433321 123444444322 22222211 134444599999999999999999877655
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=177.51 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=127.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+|++|+|+|++|+.+++.|. +.|++|+++|.|+++++.+.+.+..+++||++|++.|++++++++|.++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~----------~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELT----------AAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEE
Confidence 468999999999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+++++|+.|..++..+|+.+ ..+++++++++++.+.++++|+|.|++|+.++|.++++.+.+
T Consensus 76 ~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~~~~l~~~i~~ 137 (141)
T 3llv_A 76 ITGSDDEFNLKILKALRSVS-DVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMDKIKK 137 (141)
T ss_dssp ECCSCHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHhC-CceEEEEEcChhHHHHHHHcCCCEEECHHHHHHHHHHHHHhC
Confidence 99999999999999999999 779999999999999999999999999999999999999988
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=181.70 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=123.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHH---hcCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESR---KLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~---~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++|++|||+|++|+.+++.|. +.|++|+++|+| +++++.+. +.+..+++||++|+++|+++++++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~----------~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLN----------QRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------HCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhh
Confidence 3579999999999999999997 789999999998 56665554 357999999999999999999999
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
||.+++++++|+.|..++..+|+++|..+++++++++++.+.++++|+|.|++|+.+++..+++.+..
T Consensus 72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~~~~l~~~~~~ 139 (153)
T 1id1_A 72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNG 139 (153)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEcHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999987765
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=180.07 Aligned_cols=137 Identities=20% Similarity=0.234 Sum_probs=129.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc-CCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a-~i~~a~ 479 (663)
..+|++|||+|++|+.+++.|. +. |++|+++|.|+++++.+++.|..+++||++|++.|+++ +++++|
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~----------~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELR----------ARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHH----------HHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------hccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 4679999999999999999997 67 99999999999999999988999999999999999999 999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcC
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFG 548 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~ 548 (663)
.+++++++++.|..++..+|+.+|+.+++++++++++.+.+++.|+|.+++|+.++|..+++.+++.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~~~~ 176 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVCKQLE 176 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEchHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999988554
|
| >1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-21 Score=207.33 Aligned_cols=294 Identities=19% Similarity=0.178 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHH----HHhhh--HHHHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARL----KALAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
...-+.+-.+++++|.+|+|+|.+.+ ++.+| .....++.++++|+++.. .++
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~-----------------~~~----- 116 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL-----------------AFN----- 116 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG-----------------GGC-----
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH-----------------HHh-----
Confidence 34568899999999999999999877 66555 367778888888877632 222
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~-~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
.....+..-..+...|+.+....++...+. .++..++.+++.+++||+.++++++++.. ++.+. ..+.
T Consensus 117 ---~~~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~~~-~~l~--- 185 (388)
T 1zcd_A 117 ---YADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDLSM-ASLG--- 185 (388)
T ss_dssp ---CSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCCCH-HHHH---
T ss_pred ---cCChhhhhhhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCccH-HHHH---
Confidence 122334455566677999999999988765 44556689999999999999999988632 11221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC-----chhhH
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRTQ 259 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~-----~~~~~ 259 (663)
..+..+ ...+.. + |.+.++......+ .+.+++.++..|+|+.+|+|++|+++|.. +..++
T Consensus 186 -~~~~~~-----~~~~~l----~---r~~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~ 250 (388)
T 1zcd_A 186 -VAAVAI-----AVLAVL----N---LCGARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKR 250 (388)
T ss_dssp -HHHHHH-----HHHHHH----H---HTTCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHH
T ss_pred -HHHHHH-----HHHHHH----H---HhcchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHH
Confidence 111111 111111 1 1122222222222 22455677999999999999999999984 35688
Q ss_pred HHhhhhch-hhhhHHHH-HHHhccccChh---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHH
Q 006034 260 IEADIRPF-RGLLLGLF-FVTTGSSIDIE---LLFREWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQES 324 (663)
Q Consensus 260 i~~~~~~~-~~~~~plF-Fv~vG~~l~~~---~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~ 324 (663)
++++++++ ..+++|+| |+..|.++|.. .+.+ +..+.+++..+++|+++++..++.. |++|++.
T Consensus 251 le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~--~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~ 328 (388)
T 1zcd_A 251 LEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTS--ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQI 328 (388)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHH--HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHH
Confidence 99999999 56899999 99999999974 2222 2223455667899999855555544 8999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHcCC--CchhhHHHHHHHHHHHHhhhHHHHH
Q 006034 325 VRIGLLLSQGGEFAFVVFSLANRLGV--LPLELNKLLIIVVVLSMALTPLLNE 375 (663)
Q Consensus 325 ~~~g~~l~~~G~~~lvla~~a~~~g~--i~~~~~~~lv~~vvlt~ii~pi~~~ 375 (663)
..+|+.++.+++++++++.++++.+. ..++.+..++.++++|++++|++.+
T Consensus 329 ~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~ 381 (388)
T 1zcd_A 329 MVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLR 381 (388)
T ss_dssp TTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGT
T ss_pred HHHHHHhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876 3556688888888899999988764
|
| >3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-18 Score=191.88 Aligned_cols=262 Identities=13% Similarity=0.111 Sum_probs=158.1
Q ss_pred CCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHhhhhhhcCCcchhhhhcccCCCCcEEEEcCCcchHH--HHHHhcccc
Q 006034 349 GVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQV--LANLLSAPL 426 (663)
Q Consensus 349 g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~viI~G~g~~g~~--la~~L~~~~ 426 (663)
+.+.+.+-.++..+.+++..++-++..+..+. .+ .+++ ...+.++|+||||+++.++. +.++|..
T Consensus 10 ~~~~~~~~~IlgGI~lFa~~ig~liel~~~r~-~~-~G~y---------~~~~~k~HIIIcG~~~~~~v~~fL~El~~-- 76 (798)
T 3naf_A 10 KQIEDKLEEILSKLYHIENELARIKKLLGERK-KY-GGSY---------SAVSGRKHIVVCGHITLESVSNFLKDFLH-- 76 (798)
T ss_dssp ---------------------------------CC-CSSC---------CCCCSSEEEEEESCCCHHHHHHHHHHHTC--
T ss_pred HHhhhhheehhHHHHHHHHHHHHHHHHHHHHH-hh-CCcc---------ccccCCCeEEEEcCCCHHHHHHHHHHHHh--
Confidence 33444554555555566665555444332211 00 0111 11357899999999986553 4555531
Q ss_pred cCCCCCCCCCCCEEEEeCChH--HHHHHHh---cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcC--------CHHHHHH
Q 006034 427 ASGSDGNTVGWPFVAFDLNPS--VVKESRK---LGFPILYGDASRPAVLLSAGITSPKAVMIMYT--------DKKRTIE 493 (663)
Q Consensus 427 ~~~~~~~~~~~~vvvid~d~~--~~~~~~~---~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~--------dd~~n~~ 493 (663)
.+ +...+.++|+++.++. ..+...+ .+..+++||++++++|++||+++|+++++..+ +|.+|+.
T Consensus 77 -~~--~~~~~~~IVIL~~~~p~~eLe~lL~~~~~~V~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl 153 (798)
T 3naf_A 77 -KD--RDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIM 153 (798)
T ss_dssp -TT--SCCCCEEEEEEESSCCCHHHHHHHHHTTTTEEEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHH
T ss_pred -hc--ccccCCcEEEEeCCCCcHHHHHHhhcccCceEEEEcCCCCHHHHHhcCHhhCCEEEEECCccccCCccchHHHHH
Confidence 00 0112458999987532 2333332 56889999999999999999999999999885 5889999
Q ss_pred HHHHHHHhCCCCcEEEEecChhhHHHHHH------cCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc--
Q 006034 494 AVQRLRLAFPAIPIYARAQDMMHLLDLKK------AGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSM-- 565 (663)
Q Consensus 494 ~~~~~r~~~~~~~iia~~~~~~~~~~l~~------~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~-- 565 (663)
+++++|+++|+++|+|++.++++.+.+++ +|+|.||+|+...++.||+.++. |....++.+++....
T Consensus 154 ~vLsar~lnP~i~IIa~~~~~en~~~L~~~~sw~~AGAd~VI~~~el~g~LLAqs~l~-----PGls~~i~~LLs~~~~~ 228 (798)
T 3naf_A 154 RVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLA-----QGLSTMLANLFSMRSFI 228 (798)
T ss_dssp HHHHHHHHSTTCCEEEEESCTTGGGSGGGCTTCCTTTTCEEEEHHHHHHHHHHHHHHS-----TTHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHCCCCCEEEEECCHhHHHHHHhcccchhcCCCEEEehHHHHHHHHHHHhcC-----CCHHHHHHHHhcccccc
Confidence 99999999999999999999999999987 79999999999999999999999 999999999886522
Q ss_pred ----ccchhhhcccCCcc-----hhcccccccchhhhhhhccCCCCCCC----------cccccCCCCCCCCcCCCCCCc
Q 006034 566 ----EIQAQEVLSQKDDQ-----EFDIMKPLQVRVADIVEAEKTIPSTS----------NDDKLSREDNTDTAGEDAKGV 626 (663)
Q Consensus 566 ----~~~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~d~~ 626 (663)
+.|+.|........ ......+ .+..++.+.-..++.-+ .++++...|+++++|++||++
T Consensus 229 ~~~~~~Wi~eY~~g~g~Eiy~v~l~s~~~G--~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~d~~L~~GD~L 306 (798)
T 3naf_A 229 KIEEDTWQKYYLEGVSNEMYTEYLSSAFVG--LSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLG 306 (798)
T ss_dssp CCCSCSHHHHHHHHHTBCCEEEECCGGGTT--CBHHHHHHHHHHHTCCCEEEEEEECSSSCEEEEESCCTTCBCCTTCEE
T ss_pred ccchhHHHHHHhcccCcEEEEEeCCcccCC--CCHHHHHHHHHHhCCEEEEEEEeccCCCCCeEEECCCCCCEECCCCEE
Confidence 23444332211110 0011112 22222211000000111 134578889999999999999
Q ss_pred eEEEeec
Q 006034 627 LYCELNG 633 (663)
Q Consensus 627 ~~~~~~~ 633 (663)
.+.|.+.
T Consensus 307 ivIa~~~ 313 (798)
T 3naf_A 307 FFIASDA 313 (798)
T ss_dssp EECCBTT
T ss_pred EEEeCCH
Confidence 9988764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=145.45 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=121.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++|+|+|++|+.+++.|. +.|++|+++|+|+++.+.+.+ .+..++.||.++++.+++++++++|.++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~----------~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLS----------EKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 47999999999999999997 678999999999999988875 4778899999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+++++++.|..++..+|+.+++ +++++++++++.+.+++.|+|.+++|+...+..+++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~g~~~v~~p~~~~~~~~~~~~~~ 136 (140)
T 1lss_A 75 AVTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLGVDVVVSPELIAANYIEKLIER 136 (140)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHTTCSEEECHHHHHHHHHHHHHTC
T ss_pred EeeCCchHHHHHHHHHHHcCCC-EEEEEecCHhHHHHHHHcCCCEEECHHHHHHHHHHHHhcc
Confidence 9999999999999999998876 8999999999999999999999999999999999888766
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=149.46 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=123.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++|+|+|.+|+.+++.|. +.|++|+++|+|+++.+.+.+.+..++.||.+|++.+++++++++|.++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELH----------RMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHH----------HTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 357999999999999999997 6789999999999998888777788899999999999999999999999
Q ss_pred EEcCCH-HHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 483 IMYTDK-KRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 483 ~~~~dd-~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
.+++++ +.|..++..+|+.+++ +++++++++.+.+.++++|+|.+++|+..++..+++.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~g~~~vi~p~~~~~~~l~~~~~~ 138 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIP-NIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSD 138 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCS-EEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHcCCCEEECccHHHHHHHHHHHhh
Confidence 999986 8899999999999987 9999999999999999999999999999999999999987
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-17 Score=151.77 Aligned_cols=134 Identities=21% Similarity=0.266 Sum_probs=123.6
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-hcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
...++++|+|+|++|+.+++.|. +.|++|+++|+|+++.+.++ +.+..++.||.++++.|++++++++|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~----------~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad 86 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLAS----------SSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKAD 86 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCS
T ss_pred cCCCcEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCC
Confidence 46679999999999999999997 78899999999999988887 67788899999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
.+++++++++.|..++..+|+++|..+++++++++.+.+.++++|+| +++|++.++..+++.+..
T Consensus 87 ~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~~~~a~~l~~~l~~ 151 (155)
T 2g1u_A 87 MVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIK-TICPAVLMIEKVKEFIIG 151 (155)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE-EECHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCc-EEcHHHHHHHHHHHHHhc
Confidence 99999999999999999999988888999999999999999999999 999999888888877654
|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-17 Score=183.78 Aligned_cols=220 Identities=14% Similarity=0.101 Sum_probs=154.0
Q ss_pred CCCcEEEEcCCcchHH--HHHHhcccccCCCCCCCCCCCEEEEeCCh--HHHHHHHh---cCCCEEEecCCCHHHHHhcC
Q 006034 402 GSEPVVIVGFGQMGQV--LANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRK---LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~--la~~L~~~~~~~~~~~~~~~~vvvid~d~--~~~~~~~~---~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++||||||+++.++. +.+++.. . .+...+.+||+++.++ +..+.+.+ .+..+++||++++++|++|+
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h---~--d~~~~~~~VVIL~~~~P~~ELe~lL~~~~~~V~fI~Gdat~~edL~RA~ 76 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLH---K--DRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVK 76 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHH---H--CTTTTTCEEEEECSSCCCHHHHTTHHHHCSSEEEECCCTTSHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHh---c--cccccCCcEEEEeCCCCCHHHHHHHHhhcCceEEEEeCCCCHHHHHhcC
Confidence 4789999999988875 3454431 0 0012355899998754 23333222 67889999999999999999
Q ss_pred CCCCcEEEEEcC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH------cCCCeEEcCchHHHHHHH
Q 006034 475 ITSPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK------AGATDAILENAETSLQLG 540 (663)
Q Consensus 475 i~~a~~vv~~~~--------dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~------~Gad~vi~p~~~~~~~la 540 (663)
+++|+++++..+ +|.+|+..++++|+++|+++|+|++.++++...+++ +|+|.||+|+...+..||
T Consensus 77 I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP~i~IVA~~~~~en~~~L~ri~sw~~AGAd~VI~~~el~g~LLA 156 (726)
T 3mt5_A 77 IESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIA 156 (726)
T ss_dssp GGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCTTSCEEEEESCHHHHGGGGGSTTCCTTTTCEEEEHHHHHHHHHH
T ss_pred hhhcCEEEEEcCccccCCcccHHHHHHHHHHHHHhCCCCCEEEEECCHHHHHHHhhccchhhcCCCEEEehHHHHHHHHH
Confidence 999999999875 589999999999999999999999999999999984 899999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhcc------cccchhhhcccCCcc--h---hcccccccchhhhhhhccCCCCCCC----
Q 006034 541 SKLLKGFGVMSDDVTFLRQLVRNS------MEIQAQEVLSQKDDQ--E---FDIMKPLQVRVADIVEAEKTIPSTS---- 605 (663)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~e~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l---- 605 (663)
+.++. |....++.+++... .+.|+.|........ . .....+ .+..|+.+.-...+.-+
T Consensus 157 qs~l~-----PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v~l~s~~~G--~Tf~ea~~~lr~k~gaiLIGI 229 (726)
T 3mt5_A 157 QSCLA-----QGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVG--LSFPTVCELCFVKLKLLMIAI 229 (726)
T ss_dssp HHHHS-----TTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEEECCGGGTT--SBHHHHHHHHHHTTCCEEEEE
T ss_pred HHhcC-----CCHHHHHHHHHhcccccccchhHHHHHHhccCCceEEEEeCCcccCC--CCHHHHHHHHHhhCCEEEEEE
Confidence 99999 99999988888642 233444432111100 0 011112 22222211000000000
Q ss_pred ------cccccCCCCCCCCcCCCCCCceEEEeec
Q 006034 606 ------NDDKLSREDNTDTAGEDAKGVLYCELNG 633 (663)
Q Consensus 606 ------~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 633 (663)
.++++...|+++++|++||++.+.|.+.
T Consensus 230 ~r~~~~~~g~iilNP~~d~~I~~GD~LiVIa~s~ 263 (726)
T 3mt5_A 230 EYKSANRESRILINPGNHLKIQEGTLGFFIASDA 263 (726)
T ss_dssp EC------CCCEESCCTTCBCCTTCEEEEEESCH
T ss_pred EecccCCCCeEEECCCCCcEECCCCEEEEEECCH
Confidence 1345778899999999999999888654
|
| >4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-13 Score=155.06 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=144.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH--H-H--hcCCCEEEecCCCHHHHHhcCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE--S-R--KLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~--~-~--~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
.++||||||+++.++ +...|++.+..+- .+.+.+||++..++...+. . . .....+++||+++++.|++|+++
T Consensus 2 gk~HivvcG~~~~~~-l~~fL~ef~~~~~--~~~~~~vVil~~~~p~~el~~~l~~~~~~v~~i~Gs~~~~~dL~ra~i~ 78 (722)
T 4hpf_A 2 GKKFIVVCGNITVDS-VTAFLRNFLRDKS--GEINTEIVFLGETPPSLELETIFKCYLAYTTFISGSAMKWEDLRRVAVE 78 (722)
T ss_dssp -CCEEEEESCCCHHH-HHHHHTTC----------CCEEECCBSCC------CCCCTTTTSEECCBCCSSCHHHHHHHTGG
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHhhhhh--hcCCCeEEEEeCCCCCHHHHHHHhhhCceEEEEEcCCCCHHHHHhcCcc
Confidence 368999999998875 4444543221111 1335678877654432221 1 1 12345678999999999999999
Q ss_pred CCcEEEEEcC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH------cCCCeEEcCchHHHHHHHHH
Q 006034 477 SPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK------AGATDAILENAETSLQLGSK 542 (663)
Q Consensus 477 ~a~~vv~~~~--------dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~------~Gad~vi~p~~~~~~~la~~ 542 (663)
+|+++++..+ +|..|++.++.+|+++|+++++++..++++...++. +|+|.||++++..+..||+.
T Consensus 79 ~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p~~~iivq~~~~~n~~~~~~~~~~~~~gad~VI~~~el~~~lla~s 158 (722)
T 4hpf_A 79 SAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSWNWDTGDNIICFAELKLGFIAQG 158 (722)
T ss_dssp GSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCTTCCEEEECSSGGGGGHHHHSTTCCTTTTCEEECHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCccCCchhhHHHHHHHHHHHHHhCCCCCEEEEECChhhHHHHHhhhhhhhcCCCeEEeHHHHHHHHHHHH
Confidence 9999998876 488999999999999999999999999998888776 69999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhcccc------cchhhhcccCCcc-----hhcccccccchhhhhh----hcc-C----CC-
Q 006034 543 LLKGFGVMSDDVTFLRQLVRNSME------IQAQEVLSQKDDQ-----EFDIMKPLQVRVADIV----EAE-K----TI- 601 (663)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~-~----~~- 601 (663)
++. |.....+.++++.... .|..+........ ......+ .+..++. +.- . .+
T Consensus 159 ~~~-----PG~stli~~Ll~~~~~~~~~~~~w~~~Y~~g~~~eiy~~~~~~~~~G--~tf~e~~~~~~~~~~~iligi~~ 231 (722)
T 4hpf_A 159 CLV-----PGLCTFLTSLFVEQNKKVMPKQTWKKHFLNSMKNKILTQRLSDDFAG--MSFPEVARLCFLKMHLLLIAIEY 231 (722)
T ss_dssp HHS-----TTHHHHHHHTTCCCCSCCCCSSHHHHHHHHHHTCBCCEEECCGGGTT--CBHHHHHHHHHHHSCCEEEEEEC
T ss_pred hcC-----CCHHHHHHHHHhcccccccchhhHHHHHhcccCceEEEeeCCcccCC--CCHHHHHHHHHhhcCeEEEEeec
Confidence 999 9888888888765421 1222211100000 0011111 1222221 100 0 00
Q ss_pred --CCCCcccccCCCCCCCCcCCCCCCceEEEee
Q 006034 602 --PSTSNDDKLSREDNTDTAGEDAKGVLYCELN 632 (663)
Q Consensus 602 --~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~ 632 (663)
...-.++++...|+++++|++||++.|.+..
T Consensus 232 ~~~~~~~~~~i~lNP~~~~~i~~~D~~~~Ia~~ 264 (722)
T 4hpf_A 232 KSLFTDGFCGLILNPPPQVRIRKNTLGFFIAET 264 (722)
T ss_dssp -------CCCCEESCCTTCBCCTTCEEEEEBSC
T ss_pred ccccccCCCeEEECCCCCeEECCCCEEEEEECC
Confidence 0111245577889999999999999998754
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.9e-06 Score=71.66 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=78.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++|+|.|.+|+.+++.|. +.| ++|+++|+++++.+.+.+.+...+.+|.+|++.++++ ++++|.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~----------~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~d~v 73 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLK----------TSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKA-LGGFDAV 73 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHH----------HCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred cCeEEEECCCHHHHHHHHHHH----------hCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHH-HcCCCEE
Confidence 357999999999999999997 677 8999999999999988888889999999999988876 6789999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 519 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~ 519 (663)
+.+++.. .+..+...+++.+ .+.+-...+.+..+.
T Consensus 74 i~~~~~~-~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 108 (118)
T 3ic5_A 74 ISAAPFF-LTPIIAKAAKAAG--AHYFDLTEDVAATNA 108 (118)
T ss_dssp EECSCGG-GHHHHHHHHHHTT--CEEECCCSCHHHHHH
T ss_pred EECCCch-hhHHHHHHHHHhC--CCEEEecCcHHHHHH
Confidence 8888653 3344455555554 234433444443333
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=7.5e-05 Score=75.64 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=75.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-----HHHHHH----------------------hc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR----------------------KL 455 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-----~~~~~~----------------------~~ 455 (663)
.++++|+|+|++|...++.|. +.|.+|+|||.+.. ..+.+. +.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll----------~~Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLM----------PTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTK 82 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHG----------GGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTS
T ss_pred CCEEEEECCcHHHHHHHHHHH----------hCCCEEEEEcCCCCcchhHHHHHHHhccccccccchhhccccccccccc
Confidence 468999999999999999997 89999999998753 222222 21
Q ss_pred -CC-CEEEecCCCHHHH---HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC-CCCcEEEEecChhhHH
Q 006034 456 -GF-PILYGDASRPAVL---LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF-PAIPIYARAQDMMHLL 518 (663)
Q Consensus 456 -~~-~vi~GD~~~~~~L---~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~-~~~~iia~~~~~~~~~ 518 (663)
+. .++.++.. ++.| .+ ++.++.|+++|+|++.|..++..||+.+ .+ ..+.++++++...
T Consensus 83 g~i~~~i~~~~~-~~dL~~l~~--~~~adlViaat~d~~~n~~I~~~Ar~~f~~~-i~VNvvd~pel~~ 147 (274)
T 1kyq_A 83 NEIYEYIRSDFK-DEYLDLENE--NDAWYIIMTCIPDHPESARIYHLCKERFGKQ-QLVNVADKPDLCD 147 (274)
T ss_dssp CCCSEEECSSCC-GGGGCCSST--TCCEEEEEECCSCHHHHHHHHHHHHHHHCTT-SEEEETTCGGGBS
T ss_pred CCeeEEEcCCCC-HHHHhhccc--CCCeEEEEEcCCChHHHHHHHHHHHHhcCCC-cEEEECCCcccCe
Confidence 23 55666543 3333 23 5689999999999999999999999983 23 4677888888765
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=71.54 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKL-GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++|+|+|++|..-++.|. +.|.+|++|+.+.. ..+.+.+. +..++.++.. ...++++|
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll----------~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~------~~dL~~ad 93 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFL----------QEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVG------EEDLLNVF 93 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHG----------GGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCC------GGGSSSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCC------HhHhCCCC
Confidence 3468999999999999999997 78999999987654 34555543 4566655444 23567899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
.||++|+|++.|..++..+| .+ + -+.+++++++.
T Consensus 94 LVIaAT~d~~~N~~I~~~ak-~g--i-~VNvvD~p~~~ 127 (223)
T 3dfz_A 94 FIVVATNDQAVNKFVKQHIK-ND--Q-LVNMASSFSDG 127 (223)
T ss_dssp EEEECCCCTHHHHHHHHHSC-TT--C-EEEC-----CC
T ss_pred EEEECCCCHHHHHHHHHHHh-CC--C-EEEEeCCcccC
Confidence 99999999999999998887 43 2 35566666554
|
| >1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A | Back alignment and structure |
|---|
Probab=97.56 E-value=3.6e-07 Score=89.12 Aligned_cols=132 Identities=8% Similarity=-0.024 Sum_probs=89.2
Q ss_pred cCCCHHHHHhcCCCCCc------EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHH
Q 006034 463 DASRPAVLLSAGITSPK------AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETS 536 (663)
Q Consensus 463 D~~~~~~L~~a~i~~a~------~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~ 536 (663)
|..|++.+.+.+++++| .+++++++|+.|.+.++. |+.+.+ ++|++++++.+...+++.|+|.++
T Consensus 42 ~~a~~~ll~ee~i~~~d~~l~~~i~v~~t~~de~n~L~~ll-k~aGa~-~VIa~~~~~~~~~vl~~~gi~~vi------- 112 (205)
T 1vct_A 42 EIAEEVLELEERIDLLNYQLMMHSVLAARNVKEAEQVITIL-QIANAI-EDISNAAGDLAKMVLEGVELHPVI------- 112 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHTTCCCCHHH-------
T ss_pred HHHHHHHHHHHHHHHhhhhhceeeeeecCChhhHHHHHHHH-HHcCCC-EEEcccchHHHHHHHHhcCCCHHH-------
Confidence 44678888899999988 888888888999988875 888766 888899899999999999998554
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccchhhhcccCCc-chhcccccccchh------hhhhhccCCCCCCCcccc
Q 006034 537 LQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRV------ADIVEAEKTIPSTSNDDK 609 (663)
Q Consensus 537 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~ 609 (663)
+..++ . .+..+.++.++.+. ..++++.+++.+. ..+.| +++
T Consensus 113 ----~~~~r-----------------~-~~~~~~e~~v~~~s~~~GktL~el~l~~~~gv~IvaI~R----------~g~ 160 (205)
T 1vct_A 113 ----KETIL-----------------E-GEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRR----------GKR 160 (205)
T ss_dssp ----HHHHH-----------------H-SSSEEEEEECCTTCTTTTCBHHHHCHHHHHSCEEEEEEE----------TTE
T ss_pred ----HHHHH-----------------h-ccCeEEEEEECCCCccCCCCHHHcCCCccCCEEEEEEEE----------CCE
Confidence 11111 0 12233333333221 2244444444332 22222 344
Q ss_pred cCCCCCCCCcCCCCCCceEEEeecCC
Q 006034 610 LSREDNTDTAGEDAKGVLYCELNGTN 635 (663)
Q Consensus 610 ~~~~~~~~~~~~~~d~~~~~~~~~~~ 635 (663)
....|+++|+|++||++.++|+...-
T Consensus 161 ~i~~P~~dt~L~~GD~Liv~g~~~~i 186 (205)
T 1vct_A 161 WIFGPNENFKIRAGDVLIGRGTRTSI 186 (205)
T ss_dssp EEESCCTTCBCCTTCEEEEEECHHHH
T ss_pred EEeCCCCCCEECCCCEEEEEECHHHH
Confidence 55579999999999999999987653
|
| >4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00072 Score=78.31 Aligned_cols=122 Identities=18% Similarity=0.113 Sum_probs=84.2
Q ss_pred cCCCCcEEEEcCCcc------hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHH
Q 006034 400 YEGSEPVVIVGFGQM------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAV 469 (663)
Q Consensus 400 ~~~~~~viI~G~g~~------g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~ 469 (663)
+..++|+|||+.|.. =+.+..-|++ +-. +..+-.++|++..++-..+.+.. ....++.|++.+.+.
T Consensus 382 ~~~~nhivvc~~~~~~~~~~gL~~fi~PLRa---~~~-~~~el~pIViL~~~~~~~~~w~~i~~Fp~Vy~~~GSpl~~~D 457 (722)
T 4hpf_A 382 YKFRNHIVACVFGDAHSAPMGLRNFVMPLRA---SNY-TRKELKDIVFIGSLDYLQREWRFLWNFPQIYILPGCALYSGD 457 (722)
T ss_dssp CCCCSCEEEEECCCTTSCCCCSHHHHGGGGB---TTS-CGGGCCCEEEEECHHHHHHHGGGGTTCSSEEEEESCTTCHHH
T ss_pred ccccCCEEEEeccCcccccccchhheeeccc---ccc-ccccCCCEEEEeCCCCCHHHHHHHhcCCCEEEEECCcCCHHH
Confidence 457899999997652 2344444541 000 01123467777654433334443 235678999999999
Q ss_pred HHhcCCCCCcEEEEEcCC----------HHHHHHHHHHHHHh-------CCCCcEEEEecChhhHHHHHHcCC
Q 006034 470 LLSAGITSPKAVMIMYTD----------KKRTIEAVQRLRLA-------FPAIPIYARAQDMMHLLDLKKAGA 525 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~d----------d~~n~~~~~~~r~~-------~~~~~iia~~~~~~~~~~l~~~Ga 525 (663)
|++||+..|+.+|+...+ |.+++.+.+..+++ ++++++++...++.+.+.+....-
T Consensus 458 L~ragi~~a~~vVIl~~~~~~~~~~~~~D~~tI~~~~~I~~l~~~~~~~~~~i~iitEL~~~sN~~fl~~~~~ 530 (722)
T 4hpf_A 458 LHAANIEQCSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDEKSNCRKVPILTELKNPSNIHFIEQLGG 530 (722)
T ss_dssp HHHTTGGGCSEEEEECCCCCC-----CCSHHHHHHHHHHHSCCC-------CCCEEEECSSGGGHHHHHHHHT
T ss_pred HHhcCcccccEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHhhhhccCCCCcEEEEecCcccchhhccccc
Confidence 999999999999887621 66788899999888 477889999999999999876443
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0008 Score=68.17 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=69.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+++|.|. |.+|+.+++.|. +. |++|+++++++++.+.+.+.+..++.||.+|++.++++ ++++|.|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~-~~~~d~v 70 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLL----------KKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKA-FAGVSKL 70 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHT----------TTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred eEEEEcCCchHHHHHHHHHH----------HhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHH-HhcCCEE
Confidence 5889987 999999999997 55 89999999999887777777889999999999999876 5678988
Q ss_pred EEEcCC---HHHHHH----HHHHHHHhCCC
Q 006034 482 MIMYTD---KKRTIE----AVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~d---d~~n~~----~~~~~r~~~~~ 504 (663)
+-+... ++.|+. ++..+++.+.+
T Consensus 71 i~~a~~~~~~~~n~~~~~~l~~a~~~~~~~ 100 (287)
T 2jl1_A 71 LFISGPHYDNTLLIVQHANVVKAARDAGVK 100 (287)
T ss_dssp EECCCCCSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEcCCCCcCchHHHHHHHHHHHHHHHcCCC
Confidence 876543 223443 34455665543
|
| >3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.3 Score=50.64 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=32.1
Q ss_pred HHHHHHHHhccCCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhH
Q 006034 13 GFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 63 (663)
Q Consensus 13 g~ilaGillGp~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~ 63 (663)
-.+++++++|.+-. +..+.++......+.++||..|+.++++++++..|+
T Consensus 22 l~i~~~~~lg~~~P-~~~~~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~ 71 (332)
T 3zux_A 22 LWAALFAAAAFFAP-DTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKH 71 (332)
T ss_dssp HHHHHHHHHHHHCG-GGTGGGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHS
T ss_pred HHHHHHHHHHHHcc-hhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 34566666664200 001123345567889999999999999999865544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0024 Score=67.54 Aligned_cols=111 Identities=16% Similarity=0.064 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+-+|+|+|.|.+|+.+++.|. ++++|.+.|.++++.+.+.+ ....+..|.+|++.|+++ ++++|.|
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~-----------~~~~v~~~~~~~~~~~~~~~-~~~~~~~d~~d~~~l~~~-~~~~DvV 81 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLK-----------DEFDVYIGDVNNENLEKVKE-FATPLKVDASNFDKLVEV-MKEFELV 81 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHT-----------TTSEEEEEESCHHHHHHHTT-TSEEEECCTTCHHHHHHH-HTTCSEE
T ss_pred CccEEEEECCCHHHHHHHHHHh-----------cCCCeEEEEcCHHHHHHHhc-cCCcEEEecCCHHHHHHH-HhCCCEE
Confidence 3446999999999999999995 45789999999999988765 456788899999999886 7899999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC----hhhHHHHHHcCCCeE
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD----MMHLLDLKKAGATDA 528 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~----~~~~~~l~~~Gad~v 528 (663)
|.+++.. .+..++..+-+.+.+ .+-...+ .+..+..+++|+..+
T Consensus 82 i~~~p~~-~~~~v~~~~~~~g~~--yvD~s~~~~~~~~l~~~a~~~g~~~i 129 (365)
T 3abi_A 82 IGALPGF-LGFKSIKAAIKSKVD--MVDVSFMPENPLELRDEAEKAQVTIV 129 (365)
T ss_dssp EECCCGG-GHHHHHHHHHHHTCE--EEECCCCSSCGGGGHHHHHHTTCEEE
T ss_pred EEecCCc-ccchHHHHHHhcCcc--eEeeeccchhhhhhhhhhccCCceee
Confidence 8888764 456677777777643 3433332 245566778887544
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=66.15 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=67.3
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+++|.|. |.+|+.+++.|. +. |++|+++++++++.+.+.+.+..++.||.+|++.++++ ++++|.|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLM----------KTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSA-LQGVEKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHT----------TTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred CEEEEcCCchHHHHHHHHHH----------hhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHH-HhCCCEE
Confidence 4789987 999999999997 55 89999999999887777677889999999999999876 5678988
Q ss_pred EEEcCCH-----HHHHHHHHHHHHhCCC
Q 006034 482 MIMYTDK-----KRTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd-----~~n~~~~~~~r~~~~~ 504 (663)
+-+...+ .....+...+++.+.+
T Consensus 70 i~~a~~~~~~~~~~~~~l~~a~~~~~~~ 97 (286)
T 2zcu_A 70 LLISSSEVGQRAPQHRNVINAAKAAGVK 97 (286)
T ss_dssp EECC--------CHHHHHHHHHHHHTCC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 7665432 1223344556666543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00048 Score=65.87 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=59.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++++|.|. |.+|+.+++.|. +.|++|++++++++..+.....+..++.+|.+|++.++++ ++++|.++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi 72 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAV----------QAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT-VAGQDAVI 72 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH-HTTCSEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHH-HcCCCEEE
Confidence 47999998 999999999997 6789999999998875443345688999999999988775 56789888
Q ss_pred EEcC
Q 006034 483 IMYT 486 (663)
Q Consensus 483 ~~~~ 486 (663)
.+..
T Consensus 73 ~~a~ 76 (206)
T 1hdo_A 73 VLLG 76 (206)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 7765
|
| >3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00046 Score=79.16 Aligned_cols=167 Identities=18% Similarity=0.091 Sum_probs=104.5
Q ss_pred cCCCCcEEEEcCCcc------hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHH
Q 006034 400 YEGSEPVVIVGFGQM------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAV 469 (663)
Q Consensus 400 ~~~~~~viI~G~g~~------g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~ 469 (663)
+..++|+|||++|.- =+.+..-|+. +.+ ..++-.++|++...+-..+.+.. ....++.|++...+.
T Consensus 398 ~~~~nHivvC~~~~~~~~~~gl~~fv~PLRa---~~~-~~~~l~~IVil~~~~~~~~~w~~i~~Fp~Vy~v~Gspl~~~d 473 (798)
T 3naf_A 398 TVLSGHVVVCIFGDVSSALIGLRNLVMPLRA---SNF-HYHELKHIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRAD 473 (798)
T ss_dssp SCCCSCEEEEEECCSSSCCCCTHHHHHHHHC---SSS-CSTTCCCEEEEBCHHHHHHHHTTTTTSSSEEBCBSCTTCHHH
T ss_pred hccCCCEEEEEecCCCcchhhhHHhhhhhhc---ccC-CccccCCEEEECCCCcCHHHHHHhhCCCceEEecCCCCCHHH
Confidence 578899999999853 3557777762 111 00123478888763333344443 246678899999999
Q ss_pred HHhcCCCCCcEEEEEcCC----------HHHHHHHHHHHHH---------------------------------------
Q 006034 470 LLSAGITSPKAVMIMYTD----------KKRTIEAVQRLRL--------------------------------------- 500 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~d----------d~~n~~~~~~~r~--------------------------------------- 500 (663)
|++|||+.|+.+|+..+. |..++++++..|.
T Consensus 474 L~~anI~~a~~~VIls~~~~~~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (798)
T 3naf_A 474 LRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQP 553 (798)
T ss_dssp HHHTTSTTCSEEEEEESSCTTCCCSSSTTHHHHHHHHHHHHCCCC-----------------------------------
T ss_pred HHHhCHHhCCEEEEEcCCCCCCCChhhhhHHHHHhhhhhhhhccccccccccccccccccccccccccccccccchhhcc
Confidence 999999999998888542 4566766666555
Q ss_pred ---hCCCCcEEEEecChhhHHHHHHc-----CCCeEEcCchHHHHHHHH----HHHHhcCCCHHHHHHHHHHHhcccccc
Q 006034 501 ---AFPAIPIYARAQDMMHLLDLKKA-----GATDAILENAETSLQLGS----KLLKGFGVMSDDVTFLRQLVRNSMEIQ 568 (663)
Q Consensus 501 ---~~~~~~iia~~~~~~~~~~l~~~-----Gad~vi~p~~~~~~~la~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (663)
.+++++++....++.|.+.+... +.+....|.+.+|..... .++..--+.+..++.+.+++..+...+
T Consensus 554 ~~~~~~~ipiitEL~~~~ni~fl~~~~~~~~~~~~~~~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~il~~lvtGg~~~~ 633 (798)
T 3naf_A 554 SITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPE 633 (798)
T ss_dssp ---CTTCCCEEEEESSTTGGGGGSCCTTCCTTCCGGGSHHHHHTSEEETTHHHHHHHHHHHCTHHHHHHHHHHSCSCHHH
T ss_pred ccccCCCCceEEEecCCCccccccccCCCccCcceeecccccccceeHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcHH
Confidence 35678899999999998888662 233334444333332221 122211223677777777776664444
Q ss_pred hh
Q 006034 569 AQ 570 (663)
Q Consensus 569 ~~ 570 (663)
.+
T Consensus 634 ~e 635 (798)
T 3naf_A 634 LE 635 (798)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0009 Score=68.89 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=67.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEe--------cCCCHHHHHhcCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG--------DASRPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~G--------D~~~~~~L~~a~i~ 476 (663)
+|.|+|.|.+|..++..|. +.|++|+++|+|+++.+.+.+.+..+... +.++++-+.+ .++
T Consensus 5 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 73 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLH----------QGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDH-QNE 73 (316)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCT-TSC
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcc-cCC
Confidence 6999999999999999997 68899999999999999888776544321 1112211111 245
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHH
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLK 521 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~ 521 (663)
++|.+++++.++.. ..+...++. +.++..++...+.....+.+.
T Consensus 74 ~~d~vi~~v~~~~~-~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~ 118 (316)
T 2ew2_A 74 QVDLIIALTKAQQL-DAMFKAIQPMITEKTYVLCLLNGLGHEDVLE 118 (316)
T ss_dssp CCSEEEECSCHHHH-HHHHHHHGGGCCTTCEEEECCSSSCTHHHHT
T ss_pred CCCEEEEEeccccH-HHHHHHHHHhcCCCCEEEEecCCCCcHHHHH
Confidence 89999999987543 333333333 344533444445444434443
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0021 Score=70.14 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=72.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|+|+.|...++.|. +.|.+|+++|.+.. ..+.+.+ .+..++.++..+ ..+++++.
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~----------~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~------~~l~~~~l 75 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLL----------EAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE------TLLDSCWL 75 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG------GGGTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCc------cccCCccE
Confidence 357999999999999999998 78999999998643 3344443 457777776543 23468999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
||++++|++.|..++..||+.+. + +..+++++..
T Consensus 76 Vi~at~~~~~n~~i~~~a~~~~i--~-vn~~d~~e~~ 109 (457)
T 1pjq_A 76 AIAATDDDTVNQRVSDAAESRRI--F-CNVVDAPKAA 109 (457)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTC--E-EEETTCTTSS
T ss_pred EEEcCCCHHHHHHHHHHHHHcCC--E-EEECCCcccC
Confidence 99999999899999999999862 2 4456666553
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0028 Score=65.29 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=70.6
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHH---HHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVK---ESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~---~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
..++++|.|. |.+|+.+++.|. +.|++|++++++++ +.+ .+...+..++.||.+|++.++++ ++
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-~~ 78 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSL----------KLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVEL-MK 78 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHH----------HTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHH-HT
T ss_pred CCCeEEEECCCchHHHHHHHHHH----------HCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHH-Hc
Confidence 3457999996 999999999997 67899999999874 333 33457899999999999998876 45
Q ss_pred CCcEEEEEcCCH--HHHHHHHHHHHHhC-CCCcEE
Q 006034 477 SPKAVMIMYTDK--KRTIEAVQRLRLAF-PAIPIY 508 (663)
Q Consensus 477 ~a~~vv~~~~dd--~~n~~~~~~~r~~~-~~~~ii 508 (663)
.+|.|+.+.+.. .....++..+++.+ .+ ++|
T Consensus 79 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~-~~v 112 (318)
T 2r6j_A 79 KVDVVISALAFPQILDQFKILEAIKVAGNIK-RFL 112 (318)
T ss_dssp TCSEEEECCCGGGSTTHHHHHHHHHHHCCCC-EEE
T ss_pred CCCEEEECCchhhhHHHHHHHHHHHhcCCCC-EEE
Confidence 689888877642 22334556667765 44 444
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0039 Score=64.03 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+++.|. ..|.+|++.|+++++.+.+.+.+..++. .+.+++. ++++|.|
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~----------~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~l~~~-l~~aDvV 219 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFA----------ALGANVKVGARSSAHLARITEMGLVPFH-----TDELKEH-VKDIDIC 219 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTCEEEE-----GGGHHHH-STTCSEE
T ss_pred CCCEEEEEcccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCCeEEc-----hhhHHHH-hhCCCEE
Confidence 3467999999999999999997 7889999999999887777665654432 1223332 5789999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHcCCCeEEcCchH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILENAE 534 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--~~~~~l~~~Gad~vi~p~~~ 534 (663)
+.+++....|- ...+.+.|...++-.+..+ ...+..++.|+..+..|...
T Consensus 220 i~~~p~~~i~~---~~~~~mk~g~~lin~a~g~~~~~~~~a~~~G~~~i~~pg~~ 271 (300)
T 2rir_A 220 INTIPSMILNQ---TVLSSMTPKTLILDLASRPGGTDFKYAEKQGIKALLAPGLP 271 (300)
T ss_dssp EECCSSCCBCH---HHHTTSCTTCEEEECSSTTCSBCHHHHHHHTCEEEECCCHH
T ss_pred EECCChhhhCH---HHHHhCCCCCEEEEEeCCCCCcCHHHHHHCCCEEEECCCCC
Confidence 99988632221 2334555554444444332 11266677899777677543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0022 Score=65.43 Aligned_cols=73 Identities=26% Similarity=0.337 Sum_probs=60.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHH--HHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVV--KESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~--~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+++++|.|. |.+|+.+++.|. +.| ++|++++++++.. +.+...+..++.||.+|++.++++ ++.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~----------~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~-~~~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLL----------EDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELA-LNGA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHH-HTTC
T ss_pred CCEEEEECCCchHHHHHHHHHH----------hcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHH-HhcC
Confidence 357999998 999999999997 566 9999999998763 445567899999999999999876 4568
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.++.+.+
T Consensus 74 d~vi~~a~ 81 (299)
T 2wm3_A 74 YATFIVTN 81 (299)
T ss_dssp SEEEECCC
T ss_pred CEEEEeCC
Confidence 98887765
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0017 Score=65.98 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=69.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|+|.|. |.+|+.+++.|. +. |++|+++++++++.+.+.+.+..++.||.+|++.++++ ++++|.|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~----------~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~-~~~~d~vi 70 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAI----------ANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEA-FKGMDTVV 70 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHH----------HTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHH-TTTCSEEE
T ss_pred EEEEEcCCchHHHHHHHHHh----------hCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHH-HhCCCEEE
Confidence 4899996 999999999997 44 99999999999987777677899999999999999875 56889888
Q ss_pred EEcCC---HHHHH----HHHHHHHHhCCC
Q 006034 483 IMYTD---KKRTI----EAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~d---d~~n~----~~~~~~r~~~~~ 504 (663)
-+... ...|+ .++..+++.+.+
T Consensus 71 ~~a~~~~~~~~~~~~~~~l~~aa~~~gv~ 99 (289)
T 3e48_A 71 FIPSIIHPSFKRIPEVENLVYAAKQSGVA 99 (289)
T ss_dssp ECCCCCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EeCCCCccchhhHHHHHHHHHHHHHcCCC
Confidence 77653 22333 345556666644
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0024 Score=65.44 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=69.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-----hHHHHHH---HhcCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-----PSVVKES---RKLGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-----~~~~~~~---~~~~~~vi~GD~~~~~~L~~a~ 474 (663)
++|+|.|. |.+|+.+++.|. +.|++|++++++ +++.+.+ ...+..++.||.+|++.++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~- 73 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASI----------SLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDA- 73 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHH-
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------hCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHH-
Confidence 47999996 999999999997 678999999998 5554433 346889999999999999876
Q ss_pred CCCCcEEEEEcCCH------HHHHHHHHHHHHhC-CCCcEE
Q 006034 475 ITSPKAVMIMYTDK------KRTIEAVQRLRLAF-PAIPIY 508 (663)
Q Consensus 475 i~~a~~vv~~~~dd------~~n~~~~~~~r~~~-~~~~ii 508 (663)
++.+|.|+.+.... .....++..+++.+ .+ ++|
T Consensus 74 ~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~-~~v 113 (313)
T 1qyd_A 74 LKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIK-RFL 113 (313)
T ss_dssp HTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCS-EEE
T ss_pred HhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCc-eEE
Confidence 56789888776532 23344556677765 44 444
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0063 Score=63.13 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..+|.|+|.|.+|..+++.|. +.|++|++.|+|+++.+.+.+.|..+. ++.+-+ ++++|.|+
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~l~~~g~~~~----~~~~e~----~~~aDvVi 92 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLC----------EAGYALQVWNRTPARAASLAALGATIH----EQARAA----ARDADIVV 92 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTTCEEE----SSHHHH----HTTCSEEE
T ss_pred CCEEEEECccHHHHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHHCCCEee----CCHHHH----HhcCCEEE
Confidence 357999999999999999998 789999999999999999988765332 233222 35789999
Q ss_pred EEcCCHHHHHHHH---HHHHHhCCCCcEEEEecC--hhh----HHHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAV---QRLRLAFPAIPIYARAQD--MMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~---~~~r~~~~~~~iia~~~~--~~~----~~~l~~~Gad~vi~p 531 (663)
++++++...-.+. ..+..+.++ .++.-.++ +.. .+.+++.|+..+-.|
T Consensus 93 ~~vp~~~~~~~v~~~~~~~~~l~~~-~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~p 149 (320)
T 4dll_A 93 SMLENGAVVQDVLFAQGVAAAMKPG-SLFLDMASITPREARDHAARLGALGIAHLDTP 149 (320)
T ss_dssp ECCSSHHHHHHHHTTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred EECCCHHHHHHHHcchhHHhhCCCC-CEEEecCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 9999865433333 234445555 45544443 222 234566688665444
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0024 Score=64.59 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
...+|+|.|.|.+|+.+++.|. +.|++|+++++++++.+.+.+.+..++.||.+|.+ .+++|+|
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~------~~~~d~v 67 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALA----------PQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS------LDGVTHL 67 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHG----------GGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC------CTTCCEE
T ss_pred CcCcEEEECCcHHHHHHHHHHH----------HCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc------cCCCCEE
Confidence 3467999999999999999997 77999999999999988888888999999999944 6788988
Q ss_pred EEEcC
Q 006034 482 MIMYT 486 (663)
Q Consensus 482 v~~~~ 486 (663)
|-+..
T Consensus 68 i~~a~ 72 (286)
T 3ius_A 68 LISTA 72 (286)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 87764
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0043 Score=63.81 Aligned_cols=111 Identities=18% Similarity=0.087 Sum_probs=73.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..+|.|+|.|++|..+++.|. +.|++|++.|+|+++.+.+.+.|......|.. + -++++|.++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~--e-----~~~~aDvvi 69 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCL----------RAGLSTWGADLNPQACANLLAEGACGAAASAR--E-----FAGVVDALV 69 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCSEEESSST--T-----TTTTCSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHcCCccccCCHH--H-----HHhcCCEEE
Confidence 457999999999999999998 78999999999999999998877655232222 1 246889999
Q ss_pred EEcCCHHHHHHHH---H-HHHHhCCCCcEEEEecC--hhhH----HHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAV---Q-RLRLAFPAIPIYARAQD--MMHL----LDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~---~-~~r~~~~~~~iia~~~~--~~~~----~~l~~~Gad~vi~p 531 (663)
++++++...-.+. . ....+.++ .++.-..+ +... +.+++.|+..+-.|
T Consensus 70 ~~vp~~~~~~~v~~~~~~l~~~l~~g-~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p 127 (303)
T 3g0o_A 70 ILVVNAAQVRQVLFGEDGVAHLMKPG-SAVMVSSTISSADAQEIAAALTALNLNMLDAP 127 (303)
T ss_dssp ECCSSHHHHHHHHC--CCCGGGSCTT-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred EECCCHHHHHHHHhChhhHHhhCCCC-CEEEecCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 9999864322222 1 12233444 45554432 2222 33455577655444
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0029 Score=64.69 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=69.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC------hHHHHH---HHhcCCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN------PSVVKE---SRKLGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d------~~~~~~---~~~~~~~vi~GD~~~~~~L~~a 473 (663)
++|+|.|. |.+|+.+++.|. +.|++|++++++ +++.+. +...+..++.||.+|++.|+++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~ 74 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASL----------DLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEA 74 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------hCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHH
Confidence 46999997 999999999997 678999999997 344432 3356889999999999998876
Q ss_pred CCCCCcEEEEEcCCH--HHHHHHHHHHHHhC-CCCcEE
Q 006034 474 GITSPKAVMIMYTDK--KRTIEAVQRLRLAF-PAIPIY 508 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd--~~n~~~~~~~r~~~-~~~~ii 508 (663)
++++|+|+.+.+.. .....++..+++.+ .+ +++
T Consensus 75 -~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~-~~v 110 (308)
T 1qyc_A 75 -VKNVDVVISTVGSLQIESQVNIIKAIKEVGTVK-RFF 110 (308)
T ss_dssp -HHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCS-EEE
T ss_pred -HcCCCEEEECCcchhhhhHHHHHHHHHhcCCCc-eEe
Confidence 45689888877643 22344556677776 44 444
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0044 Score=63.28 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=69.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-------HHHHH---HHhcCCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-------SVVKE---SRKLGFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-------~~~~~---~~~~~~~vi~GD~~~~~~L~~ 472 (663)
++++|.|. |.+|+.+++.|. +.|++|+++++++ ++.+. +.+.+..++.||.+|++.+++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~ 72 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASI----------KAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVK 72 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHH----------HHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHH----------hCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHH
Confidence 46999997 999999999997 6789999999987 55443 335688999999999999887
Q ss_pred cCCCCCcEEEEEcCCH--HHHHHHHHHHHHhC-CCCcEE
Q 006034 473 AGITSPKAVMIMYTDK--KRTIEAVQRLRLAF-PAIPIY 508 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd--~~n~~~~~~~r~~~-~~~~ii 508 (663)
+ ++.+|+||.+.+.. .....++..+++.+ .+ +++
T Consensus 73 ~-~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~-~~v 109 (307)
T 2gas_A 73 A-IKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVK-KFF 109 (307)
T ss_dssp H-HTTCSEEEECSSSSCGGGHHHHHHHHHHHCCCS-EEE
T ss_pred H-HhCCCEEEECCcccccccHHHHHHHHHhcCCce-EEe
Confidence 5 45789888877642 22334556667765 44 444
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0033 Score=65.78 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++|.|+|.|.+|..+++.|. +.|++|.+.|+|++..+.+.+.|.... .+..+.++++ .+++|.|
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~----------~~G~~V~~~dr~~~~~~~a~~~G~~~~---~~~~e~~~~a-~~~aDlV 72 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLH----------AANHSVFGYNRSRSGAKSAVDEGFDVS---ADLEATLQRA-AAEDALI 72 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHH----------HTTCCEEEECSCHHHHHHHHHTTCCEE---SCHHHHHHHH-HHTTCEE
T ss_pred CCCEEEEEeecHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeee---CCHHHHHHhc-ccCCCEE
Confidence 4567999999999999999998 789999999999999998888876431 1224566655 5678999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+++++.+. ...+...++...|+ .+++-+.
T Consensus 73 ilavP~~~-~~~vl~~l~~~~~~-~iv~Dv~ 101 (341)
T 3ktd_A 73 VLAVPMTA-IDSLLDAVHTHAPN-NGFTDVV 101 (341)
T ss_dssp EECSCHHH-HHHHHHHHHHHCTT-CCEEECC
T ss_pred EEeCCHHH-HHHHHHHHHccCCC-CEEEEcC
Confidence 99999653 33344445555555 4554443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0039 Score=61.20 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=59.3
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCC-CEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-PILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~-~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+.+. .++.+|.+ +++.+. ++++|.
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~----------~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~--~~~~D~ 87 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELK----------NKGHEPVAMVRNEEQGPELRERGASDIVVANLE-EDFSHA--FASIDA 87 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT-SCCGGG--GTTCSE
T ss_pred CCeEEEECCCChHHHHHHHHHH----------hCCCeEEEEECChHHHHHHHhCCCceEEEcccH-HHHHHH--HcCCCE
Confidence 357999998 999999999998 789999999999999988888889 99999999 333333 358898
Q ss_pred EEEEcC
Q 006034 481 VMIMYT 486 (663)
Q Consensus 481 vv~~~~ 486 (663)
+|-+.+
T Consensus 88 vi~~ag 93 (236)
T 3e8x_A 88 VVFAAG 93 (236)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 887765
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0018 Score=63.91 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=61.5
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|.| .|.+|+.+++.|. +.| ++|+++++++++.+.....+..++.+|.+|++.++++ ++++|.
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~----------~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~ 91 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLA----------DKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQA-MQGQDI 91 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHT----------TCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHH-HTTCSE
T ss_pred ccEEEEEeCCcHHHHHHHHHHH----------hCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHH-hcCCCE
Confidence 45799999 5999999999997 778 8999999999887655556788999999999988875 457898
Q ss_pred EEEEcCC
Q 006034 481 VMIMYTD 487 (663)
Q Consensus 481 vv~~~~d 487 (663)
+|.+...
T Consensus 92 vv~~a~~ 98 (236)
T 3qvo_A 92 VYANLTG 98 (236)
T ss_dssp EEEECCS
T ss_pred EEEcCCC
Confidence 8866654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0094 Score=61.03 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=71.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+.+|.|+|.|.+|..+++.|. +.|++|++.|+|+++.+.+.+.+..+ .++.+-+ ++ +|.|+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~~~----~~-aDvvi 75 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMT----------EWPGGVTVYDIRIEAMTPLAEAGATL----ADSVADV----AA-ADLIH 75 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHT----------TSTTCEEEECSSTTTSHHHHHTTCEE----CSSHHHH----TT-SSEEE
T ss_pred CCeEEEECcCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHCCCEE----cCCHHHH----Hh-CCEEE
Confidence 357999999999999999997 78999999999999999998876543 2333322 34 89999
Q ss_pred EEcCCHHHHHHHHHHHHH-hCCCCcEEEEecC--hhh----HHHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD--MMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~--~~~----~~~l~~~Gad~vi~p 531 (663)
++++++..--.+...+.+ +.++ .++.-..+ +.. .+.+++.|+..+-.|
T Consensus 76 ~~vp~~~~~~~v~~~l~~~l~~g-~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p 130 (296)
T 3qha_A 76 ITVLDDAQVREVVGELAGHAKPG-TVIAIHSTISDTTAVELARDLKARDIHIVDAP 130 (296)
T ss_dssp ECCSSHHHHHHHHHHHHTTCCTT-CEEEECSCCCHHHHHHHHHHHGGGTCEEEECC
T ss_pred EECCChHHHHHHHHHHHHhcCCC-CEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 999986443323333332 3444 45544443 222 233445577655333
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0083 Score=61.77 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~~ 480 (663)
...+|.|+|.|++|..+++.|. +.|++|++.|+|+++.+.+.+.|... .++ .+.++ ++|.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~e~~~-----~aDv 68 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLL----------KQGKRVAIWNRSPGKAAALVAAGAHL----CESVKAALS-----ASPA 68 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTCEE----CSSHHHHHH-----HSSE
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCee----cCCHHHHHh-----cCCE
Confidence 3457999999999999999998 78999999999999999988776532 233 33443 5799
Q ss_pred EEEEcCCHHHHHHHHH--HHHHhCCCCcEEEEecC--hh----hHHHHHHcCCCeE
Q 006034 481 VMIMYTDKKRTIEAVQ--RLRLAFPAIPIYARAQD--MM----HLLDLKKAGATDA 528 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~--~~r~~~~~~~iia~~~~--~~----~~~~l~~~Gad~v 528 (663)
|+++++++...-.+.. .+....++ .++.-.++ +. -.+.+++.|+..+
T Consensus 69 Vi~~vp~~~~~~~v~~~~~l~~~~~g-~ivid~st~~~~~~~~l~~~~~~~g~~~v 123 (306)
T 3l6d_A 69 TIFVLLDNHATHEVLGMPGVARALAH-RTIVDYTTNAQDEGLALQGLVNQAGGHYV 123 (306)
T ss_dssp EEECCSSHHHHHHHHTSTTHHHHTTT-CEEEECCCCCTTHHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCHHHHHHHhcccchhhccCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 9999998753222222 23445555 45544432 22 2234566677654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0049 Score=63.45 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=69.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh------HHHHH---HHhcCCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP------SVVKE---SRKLGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~------~~~~~---~~~~~~~vi~GD~~~~~~L~~a 473 (663)
++++|.|. |.+|+.+++.|. +.|++|+++++++ ++.+. +...+..++.||.+|++.++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASL----------SFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHH----------HTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred cEEEEEcCCchhHHHHHHHHH----------hCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHH
Confidence 46999996 999999999998 6789999999986 34333 3456899999999999999876
Q ss_pred CCCCCcEEEEEcCCH--HHHHHHHHHHHHhC-CCCcEE
Q 006034 474 GITSPKAVMIMYTDK--KRTIEAVQRLRLAF-PAIPIY 508 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd--~~n~~~~~~~r~~~-~~~~ii 508 (663)
++.+|+|+.+.+.. .....++..+++.+ .+ ++|
T Consensus 75 -~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~-~~v 110 (321)
T 3c1o_A 75 -LKQVDIVISALPFPMISSQIHIINAIKAAGNIK-RFL 110 (321)
T ss_dssp -HTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCC-EEE
T ss_pred -HcCCCEEEECCCccchhhHHHHHHHHHHhCCcc-EEe
Confidence 45689888776642 23344556667765 44 444
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=63.17 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=66.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+.+..++.||.+|++. + -++++|.||.
T Consensus 2 kilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~--~~~~~d~vi~ 68 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEAR----------RRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-A--DLDSVDAVVD 68 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-H--HHTTCSEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHH----------HCCCEEEEEEecccccccccCCCceEEecccccccH-h--hcccCCEEEE
Confidence 4899998 999999999998 789999999999999887777789999999999877 3 3457898887
Q ss_pred EcCC------HHHHHHHHHHHHH
Q 006034 484 MYTD------KKRTIEAVQRLRL 500 (663)
Q Consensus 484 ~~~d------d~~n~~~~~~~r~ 500 (663)
+.+. .+.|+..+..+-+
T Consensus 69 ~ag~~~~~~~~~~n~~~~~~l~~ 91 (224)
T 3h2s_A 69 ALSVPWGSGRGYLHLDFATHLVS 91 (224)
T ss_dssp CCCCCTTSSCTHHHHHHHHHHHH
T ss_pred CCccCCCcchhhHHHHHHHHHHH
Confidence 7643 3556666555444
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0059 Score=62.68 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++|-++|.|++|..+|+.|. +.|++|++.|+++++++.+.+.|..+. .++ ++ =++++|.+
T Consensus 4 Ms~kIgfIGLG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~G~~~~----~s~---~e-~~~~~dvv 65 (297)
T 4gbj_A 4 MSEKIAFLGLGNLGTPIAEILL----------EAGYELVVWNRTASKAEPLTKLGATVV----ENA---ID-AITPGGIV 65 (297)
T ss_dssp CCCEEEEECCSTTHHHHHHHHH----------HTTCEEEEC-------CTTTTTTCEEC----SSG---GG-GCCTTCEE
T ss_pred CCCcEEEEecHHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHcCCeEe----CCH---HH-HHhcCCce
Confidence 4567999999999999999998 799999999999999998887775542 222 22 14688999
Q ss_pred EEEcCCHHHHHH--HHHHHHHhCCCCcEEEEecC--h----hhHHHHHHcCCCeEEcCc
Q 006034 482 MIMYTDKKRTIE--AVQRLRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 482 v~~~~dd~~n~~--~~~~~r~~~~~~~iia~~~~--~----~~~~~l~~~Gad~vi~p~ 532 (663)
+++..+++.... ....+..+.++ .++.-.++ + +..+.+++.|+..+=.|-
T Consensus 66 i~~l~~~~~~~~v~~~~~~~~~~~~-~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapV 123 (297)
T 4gbj_A 66 FSVLADDAAVEELFSMELVEKLGKD-GVHVSMSTISPETSRQLAQVHEWYGAHYVGAPI 123 (297)
T ss_dssp EECCSSHHHHHHHSCHHHHHHHCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred eeeccchhhHHHHHHHHHHhhcCCC-eEEEECCCCChHHHHHHHHHHHhcCCceecCCc
Confidence 999998754332 22345566665 55554443 3 344566788998887775
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0042 Score=64.90 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=69.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh----HHHH---HHHhcCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----SVVK---ESRKLGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~----~~~~---~~~~~~~~vi~GD~~~~~~L~~a~i 475 (663)
.+|+|.|. |.+|+.+++.|. +.|++|.++++++ ++.+ .+.+.+..++.||.+|++.++++ +
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~----------~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~-~ 79 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASL----------DAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKI-L 79 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHH----------HTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH-H
T ss_pred CeEEEECCCcHHHHHHHHHHH----------HCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHH-H
Confidence 57999998 999999999997 6789999999977 4443 34457899999999999988765 3
Q ss_pred C--CCcEEEEEcCC--HHHHHHHHHHHHHhC
Q 006034 476 T--SPKAVMIMYTD--KKRTIEAVQRLRLAF 502 (663)
Q Consensus 476 ~--~a~~vv~~~~d--d~~n~~~~~~~r~~~ 502 (663)
+ ++|+||.+... -..+..++..+++.+
T Consensus 80 ~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 80 KEHEIDIVVSTVGGESILDQIALVKAMKAVG 110 (346)
T ss_dssp HHTTCCEEEECCCGGGGGGHHHHHHHHHHHC
T ss_pred hhCCCCEEEECCchhhHHHHHHHHHHHHHcC
Confidence 4 78988887764 233455667777776
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0028 Score=61.48 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=65.9
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCcEEE
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~~vv 482 (663)
+++|.| .|.+|+.+++.|. +.|++|+++++++++.+.. .+..++.||.+| ++.++++ +++.|.||
T Consensus 2 ~ilItGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~-~~~~d~vi 68 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLS----------TTDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQ-LHGMDAII 68 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHT----------TSSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTT-TTTCSEEE
T ss_pred eEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHH-HcCCCEEE
Confidence 588998 6999999999997 7899999999999875433 468899999999 9888765 56899888
Q ss_pred EEcCCH---------HHHHHHHHHHHHhCC
Q 006034 483 IMYTDK---------KRTIEAVQRLRLAFP 503 (663)
Q Consensus 483 ~~~~dd---------~~n~~~~~~~r~~~~ 503 (663)
-+.... .....++..+++.+.
T Consensus 69 ~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~ 98 (219)
T 3dqp_A 69 NVSGSGGKSLLKVDLYGAVKLMQAAEKAEV 98 (219)
T ss_dssp ECCCCTTSSCCCCCCHHHHHHHHHHHHTTC
T ss_pred ECCcCCCCCcEeEeHHHHHHHHHHHHHhCC
Confidence 777532 123344555666553
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0042 Score=60.31 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHH--HhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKES--RKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~--~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|.|. |.+|+.+++.|.+ ++|++|++++++++ +.+.+ ...+..++.+|.+|++.++++ ++++
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~---------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~ 74 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLT---------YTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQA-VTNA 74 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHH---------HCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHH-HTTC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHh---------cCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHH-HcCC
Confidence 356999995 9999999999962 58999999999999 87776 345678899999999988775 3578
Q ss_pred cEEEEEcCCH-HHHHHHHHHHHHhC
Q 006034 479 KAVMIMYTDK-KRTIEAVQRLRLAF 502 (663)
Q Consensus 479 ~~vv~~~~dd-~~n~~~~~~~r~~~ 502 (663)
|.+|.+.+.. .....+...+++.+
T Consensus 75 d~vv~~ag~~n~~~~~~~~~~~~~~ 99 (221)
T 3r6d_A 75 EVVFVGAMESGSDMASIVKALSRXN 99 (221)
T ss_dssp SEEEESCCCCHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCCCChhHHHHHHHHHhcC
Confidence 9888777652 11233334445544
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0084 Score=60.58 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=60.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE-EEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-LYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v-i~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++.|+|+|++|..+++.|. +.|++|+++|+++++.+.+.+.+... .. +| ++++ +++|.|++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~~~~---~~---~~~~--~~~D~vi~ 63 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLR----------RRGHYLIGVSRQQSTCEKAVERQLVDEAG---QD---LSLL--QTAKIIFL 63 (279)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTSCSEEE---SC---GGGG--TTCSEEEE
T ss_pred EEEEEcCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHhCCCCcccc---CC---HHHh--CCCCEEEE
Confidence 5889999999999999997 67889999999999998887766531 11 22 3444 68999999
Q ss_pred EcCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 006034 484 MYTDKKRTIEAVQRLRL-AFPAIPIYARA 511 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~-~~~~~~iia~~ 511 (663)
++..+.. ..++..++. +.++ .++.-+
T Consensus 64 av~~~~~-~~~~~~l~~~~~~~-~~vv~~ 90 (279)
T 2f1k_A 64 CTPIQLI-LPTLEKLIPHLSPT-AIVTDV 90 (279)
T ss_dssp CSCHHHH-HHHHHHHGGGSCTT-CEEEEC
T ss_pred ECCHHHH-HHHHHHHHhhCCCC-CEEEEC
Confidence 9986532 223333333 3445 455545
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.011 Score=60.12 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=72.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.+|.|+|.|++|..+++.|. +.|++|++.|+|+++.+.+.+.+.... .+.++.+ +++|.+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~~~~~~-----~~aDvvi~ 63 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLV----------KAGCSVTIWNRSPEKAEELAALGAERA---ATPCEVV-----ESCPVTFA 63 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSGGGGHHHHHTTCEEC---SSHHHHH-----HHCSEEEE
T ss_pred CEEEEEeecHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCeec---CCHHHHH-----hcCCEEEE
Confidence 36899999999999999998 789999999999999999988765331 1222333 35799999
Q ss_pred EcCCHHHHHHHH---H-HHHHhCCCCcEEEEecC--hhh----HHHHHHcCCCeEEcC
Q 006034 484 MYTDKKRTIEAV---Q-RLRLAFPAIPIYARAQD--MMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 484 ~~~dd~~n~~~~---~-~~r~~~~~~~iia~~~~--~~~----~~~l~~~Gad~vi~p 531 (663)
+++++...-... . ..+.+.++ .++.-..+ +.. .+.+++.|+..+-.|
T Consensus 64 ~vp~~~~~~~v~~~~~~l~~~l~~~-~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pef_A 64 MLADPAAAEEVCFGKHGVLEGIGEG-RGYVDMSTVDPATSQRIGVAVVAKGGRFLEAP 120 (287)
T ss_dssp CCSSHHHHHHHHHSTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred EcCCHHHHHHHHcCcchHhhcCCCC-CEEEeCCCCCHHHHHHHHHHHHHhCCEEEECC
Confidence 999764433333 2 23344555 45544443 222 234556677655444
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0045 Score=66.45 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=83.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC---CCEEEEeCChHHHHHHHhc-------CCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESRKL-------GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~---~~vvvid~d~~~~~~~~~~-------~~~vi~GD~~~~~~L~~a 473 (663)
++++|+|.|.+|+.+++.|. +.+ .+|++.|+|+++.+.+.+. ....+..|.+|++.++++
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~----------~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~ 71 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMA----------MNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVAL 71 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHH
Confidence 36899999999999999997 455 3899999999998876642 477889999998877664
Q ss_pred CCC--CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE--ecCh-----------hhHHHHHHcCCCeEEcCch
Q 006034 474 GIT--SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR--AQDM-----------MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 474 ~i~--~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~--~~~~-----------~~~~~l~~~Gad~vi~p~~ 533 (663)
++ ++|.||.+++... +..++..+.+.+.+ ++-. ...+ +..+..++.|+..+..+..
T Consensus 72 -l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~--vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~ 142 (405)
T 4ina_A 72 -INEVKPQIVLNIALPYQ-DLTIMEACLRTGVP--YLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGF 142 (405)
T ss_dssp -HHHHCCSEEEECSCGGG-HHHHHHHHHHHTCC--EEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBT
T ss_pred -HHhhCCCEEEECCCccc-ChHHHHHHHHhCCC--EEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCC
Confidence 22 4898888877543 44555666666543 4422 1121 5677788899977766643
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.001 Score=69.19 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=63.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHhcCCCEEEe------cCCCHHHHHhcCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYG------DASRPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~~~~~vi~G------D~~~~~~L~~a~i~ 476 (663)
+|.|+|.|.+|..++..|. +.|++|.++|+ ++++.+.+.+.+....+| +.++++.++++ ++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~ 70 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLV----------DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC-LE 70 (335)
T ss_dssp EEEEESCCHHHHHHHHHHH----------HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH-HT
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHH-Hh
Confidence 5889999999999999997 67899999999 999999888765311111 12222223222 46
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
++|.+++++.++...-.+..... +.++..++...|
T Consensus 71 ~~D~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~n 105 (335)
T 1txg_A 71 NAEVVLLGVSTDGVLPVMSRILP-YLKDQYIVLISK 105 (335)
T ss_dssp TCSEEEECSCGGGHHHHHHHHTT-TCCSCEEEECCC
T ss_pred cCCEEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcC
Confidence 89999999988744333323333 555533444443
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0021 Score=67.81 Aligned_cols=106 Identities=17% Similarity=0.118 Sum_probs=73.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|+|++|+.+++.|. +.|.+|++.|.|+++++.+.+. +...+ ..++.+. .++|.+
T Consensus 173 GktV~V~G~G~VG~~~A~~L~----------~~GakVvv~D~~~~~l~~~a~~~ga~~v----~~~~ll~----~~~DIv 234 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLN----------TEGAKLVVTDVNKAAVSAAVAEEGADAV----APNAIYG----VTCDIF 234 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCCEEC----CGGGTTT----CCCSEE
T ss_pred cCEEEEECchHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHcCCEEE----ChHHHhc----cCCcEe
Confidence 457999999999999999998 7899999999999998877653 43222 1123332 488987
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEE-EecCh----hhHHHHHHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQDM----MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia-~~~~~----~~~~~l~~~Gad~vi~p~~ 533 (663)
+.+...+..|.. .++.++ .++|+ .+|.+ +..+.|++.|+ ++.|..
T Consensus 235 ip~a~~~~I~~~---~~~~lg--~~iV~e~An~p~t~~ea~~~L~~~Gi--~~~Pd~ 284 (364)
T 1leh_A 235 APCALGAVLNDF---TIPQLK--AKVIAGSADNQLKDPRHGKYLHELGI--VYAPDY 284 (364)
T ss_dssp EECSCSCCBSTT---HHHHCC--CSEECCSCSCCBSSHHHHHHHHHHTC--EECCHH
T ss_pred eccchHHHhCHH---HHHhCC--CcEEEeCCCCCcccHHHHHHHHhCCC--EEecce
Confidence 766544333322 455664 34554 55553 66788999998 677764
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.013 Score=59.94 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=69.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~vv 482 (663)
.+|.|+|+|++|..+++.|. +.|++|.+.|+++++.+.+.+.+..+ .++. +.+ +++|.|+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~D~vi 65 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLL----------KEGVTVYAFDLMEANVAAVVAQGAQA----CENNQKVA-----AASDIIF 65 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHTTTCEE----CSSHHHHH-----HHCSEEE
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHCCCee----cCCHHHHH-----hCCCEEE
Confidence 47999999999999999997 67899999999999999888766432 2233 333 3589999
Q ss_pred EEcCCHHHHHHHH----HHHHHhCCCCcEEEEecCh-hhH----HHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAV----QRLRLAFPAIPIYARAQDM-MHL----LDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~----~~~r~~~~~~~iia~~~~~-~~~----~~l~~~Gad~vi~p 531 (663)
++++++...-.+. .....+.++..++...+-. ... +.+.+.|+..+-.|
T Consensus 66 ~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p 123 (301)
T 3cky_A 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAP 123 (301)
T ss_dssp ECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred EECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEcc
Confidence 9997765433333 2233455563344433332 222 23344566544334
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.002 Score=62.33 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=58.2
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|.|. |.+|+.+++.|. ++|++|+++++++++.+.+. .+..++.+|.+|++. + -++++|.+|-
T Consensus 2 kvlVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~-~--~~~~~d~vi~ 67 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAK----------NRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTL-S--DLSDQNVVVD 67 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCH-H--HHTTCSEEEE
T ss_pred eEEEEcCCchhHHHHHHHHH----------hCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhh-h--hhcCCCEEEE
Confidence 5899995 999999999998 78999999999999887766 689999999999877 3 3467898887
Q ss_pred EcCC
Q 006034 484 MYTD 487 (663)
Q Consensus 484 ~~~d 487 (663)
+.+.
T Consensus 68 ~ag~ 71 (221)
T 3ew7_A 68 AYGI 71 (221)
T ss_dssp CCCS
T ss_pred CCcC
Confidence 7654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0033 Score=62.86 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh-------------------HHHHHHHh------cC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVKESRK------LG 456 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~-------------------~~~~~~~~------~~ 456 (663)
..+|+|+|.|.+|..+++.|. ..|. +++++|.|. .+++.+.+ .+
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La----------~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 100 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLA----------SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH 100 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred CCeEEEEeeCHHHHHHHHHHH----------HcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC
Confidence 468999999999999999997 6776 899999998 66655532 12
Q ss_pred CC--EEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 457 FP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 457 ~~--vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
.. .+..+.++ +.+++. ++++|.||.++++.+.+..+...+++.+
T Consensus 101 ~~v~~~~~~~~~-~~~~~~-~~~~DvVi~~~d~~~~~~~l~~~~~~~~ 146 (249)
T 1jw9_B 101 IAITPVNALLDD-AELAAL-IAEHDLVLDCTDNVAVRNQLNAGCFAAK 146 (249)
T ss_dssp SEEEEECSCCCH-HHHHHH-HHTSSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeccCCH-hHHHHH-HhCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 22 33444443 333332 5689999999999898889999999886
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0098 Score=61.34 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..+|.|+|.|.+|..+++.|. +.|++|++.|+|+++.+.+.+.+..+ -.+..+.+ +++|.|+
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~----------~~G~~V~~~dr~~~~~~~l~~~g~~~---~~~~~~~~-----~~aDvvi 82 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLL----------KNGFKVTVWNRTLSKCDELVEHGASV---CESPAEVI-----KKCKYTI 82 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSGGGGHHHHHTTCEE---CSSHHHHH-----HHCSEEE
T ss_pred CCEEEEECccHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHCCCeE---cCCHHHHH-----HhCCEEE
Confidence 357999999999999999998 78999999999999999988876533 11223333 3579999
Q ss_pred EEcCCHHHHHHHH---HH-HHHhCCCCcEEEEecC--hh----hHHHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAV---QR-LRLAFPAIPIYARAQD--MM----HLLDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~---~~-~r~~~~~~~iia~~~~--~~----~~~~l~~~Gad~vi~p 531 (663)
++++++...-.+. .. +..+.++ .++.-..+ +. -.+.+.+.|+..+-.|
T Consensus 83 ~~vp~~~~~~~v~~~~~~l~~~l~~g-~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~p 140 (310)
T 3doj_A 83 AMLSDPCAALSVVFDKGGVLEQICEG-KGYIDMSTVDAETSLKINEAITGKGGRFVEGP 140 (310)
T ss_dssp ECCSSHHHHHHHHHSTTCGGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred EEcCCHHHHHHHHhCchhhhhccCCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 9998764322222 11 2233444 45554443 22 2234566687655444
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.011 Score=60.50 Aligned_cols=112 Identities=11% Similarity=0.101 Sum_probs=74.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|+++++.+.+.+.+..++. . +.+++ -++++|.++
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~~--~---~~l~~-~l~~aDvVi 218 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFA----------ALGAKVKVGARESDLLARIAEMGMEPFH--I---SKAAQ-ELRDVDVCI 218 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTSEEEE--G---GGHHH-HTTTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHCCCeecC--h---hhHHH-HhcCCCEEE
Confidence 457999999999999999997 7889999999999887777666655431 1 22332 246899999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHcCCCeEEcCch
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--~~~~~l~~~Gad~vi~p~~ 533 (663)
.+++....|- ...+.+.|+..++-.+..+ ...+..++.|+..+..|..
T Consensus 219 ~~~p~~~i~~---~~l~~mk~~~~lin~ar~~~~~~~~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 219 NTIPALVVTA---NVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPGL 268 (293)
T ss_dssp ECCSSCCBCH---HHHHHSCTTCEEEECSSTTCSBCHHHHHHHTCEEEECCCH
T ss_pred ECCChHHhCH---HHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCEEEECCCC
Confidence 9887632222 2344556664444433322 2236667789876655553
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.011 Score=60.85 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++|-++|.|++|..+++.|. +.|++|++.|+++++++.+.+.|..+ +.+++-+ ++++|.++.
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~----------~~G~~v~v~dr~~~~~~~l~~~Ga~~----a~s~~e~----~~~~dvv~~ 65 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLL----------KAGYLLNVFDLVQSAVDGLVAAGASA----ARSARDA----VQGADVVIS 65 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHTTCEE----CSSHHHH----HTTCSEEEE
T ss_pred CEEEEeeehHHHHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHHcCCEE----cCCHHHH----HhcCCceee
Confidence 36899999999999999998 78999999999999999999887544 2333322 368899999
Q ss_pred EcCCHHHHHHHHHH----HHHhCCCCcEEEEecC--h----hhHHHHHHcCCCeEEcC
Q 006034 484 MYTDKKRTIEAVQR----LRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 484 ~~~dd~~n~~~~~~----~r~~~~~~~iia~~~~--~----~~~~~l~~~Gad~vi~p 531 (663)
+..|++.--.+..- +..+.|. .++.-..+ + +..+.+++.|++.+=.|
T Consensus 66 ~l~~~~~v~~V~~~~~g~~~~~~~g-~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP 122 (300)
T 3obb_A 66 MLPASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAP 122 (300)
T ss_dssp CCSCHHHHHHHHHSSSSSTTSCCC--CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred cCCchHHHHHHHhchhhhhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence 99987654333321 2223333 45554443 3 44556677899887666
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0026 Score=61.98 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=59.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+. .+..++.+|.+|++.++++ ++++|.||
T Consensus 5 ~~ilItGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~-~~~~d~vi 72 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEAL----------NRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEV-CKGADAVI 72 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHH----------TTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHH-HTTCSEEE
T ss_pred CEEEEEcCCchHHHHHHHHHH----------HCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHH-hcCCCEEE
Confidence 47999995 999999999998 78999999999988754332 4678899999999988875 45789888
Q ss_pred EEcCC
Q 006034 483 IMYTD 487 (663)
Q Consensus 483 ~~~~d 487 (663)
-+.+.
T Consensus 73 ~~a~~ 77 (227)
T 3dhn_A 73 SAFNP 77 (227)
T ss_dssp ECCCC
T ss_pred EeCcC
Confidence 77654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.011 Score=59.83 Aligned_cols=66 Identities=12% Similarity=0.185 Sum_probs=53.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|.|+|+|++|..+++.|. + |++|.+.|+++++.+.+.+.|..+. + .++. ++++|.|+++
T Consensus 3 ~i~iiG~G~~G~~~a~~l~----------~-g~~V~~~~~~~~~~~~~~~~g~~~~--~--~~~~-----~~~~D~vi~~ 62 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLA----------R-RFPTLVWNRTFEKALRHQEEFGSEA--V--PLER-----VAEARVIFTC 62 (289)
T ss_dssp CEEEECCSTTHHHHHHHHH----------T-TSCEEEECSSTHHHHHHHHHHCCEE--C--CGGG-----GGGCSEEEEC
T ss_pred eEEEEcccHHHHHHHHHHh----------C-CCeEEEEeCCHHHHHHHHHCCCccc--C--HHHH-----HhCCCEEEEe
Confidence 5899999999999999998 7 9999999999999988877665442 1 2222 3578999999
Q ss_pred cCCHHH
Q 006034 485 YTDKKR 490 (663)
Q Consensus 485 ~~dd~~ 490 (663)
+.++..
T Consensus 63 v~~~~~ 68 (289)
T 2cvz_A 63 LPTTRE 68 (289)
T ss_dssp CSSHHH
T ss_pred CCChHH
Confidence 998753
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0095 Score=62.56 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH--HHHHh-cCCCEEEec-CCCHHHHHhcCCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRK-LGFPILYGD-ASRPAVLLSAGITS 477 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~--~~~~~-~~~~vi~GD-~~~~~~L~~a~i~~ 477 (663)
.++++|.|. |.+|+.+++.|. +.|++|++++++++.. +.+.+ .+..++.|| .+|++.++++ ++.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~-~~~ 73 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAA----------AVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTL-FEG 73 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHH-HTT
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHH-Hhc
Confidence 357999996 999999999997 6789999999988764 44443 367889999 9999998876 567
Q ss_pred CcEEEEEcCCH--HHH---HHHHHHHHHhC
Q 006034 478 PKAVMIMYTDK--KRT---IEAVQRLRLAF 502 (663)
Q Consensus 478 a~~vv~~~~dd--~~n---~~~~~~~r~~~ 502 (663)
+|.|+...... ..| ..++..+++.+
T Consensus 74 ~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g 103 (352)
T 1xgk_A 74 AHLAFINTTSQAGDEIAIGKDLADAAKRAG 103 (352)
T ss_dssp CSEEEECCCSTTSCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCcHHHHHHHHHHHHHHHcC
Confidence 89888655431 223 33445566665
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.013 Score=59.68 Aligned_cols=108 Identities=18% Similarity=0.132 Sum_probs=69.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|.|+|.|++|..+++.|. +.|++|.+.|+|+++.+.+.+.+..+. .+..+.+ +++|.++++
T Consensus 3 ~I~iiG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~~~~~~-----~~advvi~~ 64 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLV----------RAGFDVTVWNRNPAKCAPLVALGARQA---SSPAEVC-----AACDITIAM 64 (287)
T ss_dssp CEEEECCSTTHHHHHHHHH----------HHTCCEEEECSSGGGGHHHHHHTCEEC---SCHHHHH-----HHCSEEEEC
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCeec---CCHHHHH-----HcCCEEEEE
Confidence 6899999999999999997 679999999999999998887765431 1222333 357999999
Q ss_pred cCCHHHHHHHH---HH-HHHhCCCCcEEEEecC--hhh----HHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAV---QR-LRLAFPAIPIYARAQD--MMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~---~~-~r~~~~~~~iia~~~~--~~~----~~~l~~~Gad~vi~p 531 (663)
++++...-... .. ...+.++ .++.-..+ +.. .+.+.+.|+..+-.|
T Consensus 65 v~~~~~~~~v~~~~~~l~~~l~~g-~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pdu_A 65 LADPAAAREVCFGANGVLEGIGGG-RGYIDMSTVDDETSTAIGAAVTARGGRFLEAP 120 (287)
T ss_dssp CSSHHHHHHHHHSTTCGGGTCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCHHHHHHHHcCchhhhhcccCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 99864322222 11 1223344 45554443 222 234456677654433
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.018 Score=58.63 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=53.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~vv 482 (663)
-+|.|+|.|.+|..+++.|. +.|++|.+.|+++++.+.+.+.+... .++. +.+ +++|.|+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~D~vi 66 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLL----------KAGYSLVVSDRNPEAIADVIAAGAET----ASTAKAIA-----EQCDVII 66 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEE----CSSHHHHH-----HHCSEEE
T ss_pred ceEEEECchHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHCCCee----cCCHHHHH-----hCCCEEE
Confidence 36999999999999999997 67899999999999999888776432 2333 333 3589999
Q ss_pred EEcCCHHH
Q 006034 483 IMYTDKKR 490 (663)
Q Consensus 483 ~~~~dd~~ 490 (663)
++++++..
T Consensus 67 ~~v~~~~~ 74 (299)
T 1vpd_A 67 TMLPNSPH 74 (299)
T ss_dssp ECCSSHHH
T ss_pred EECCCHHH
Confidence 99987643
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.013 Score=60.61 Aligned_cols=93 Identities=23% Similarity=0.243 Sum_probs=64.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHhcCCC-EEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFP-ILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~~~~~-vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..+|.|+|.|.+|..+++.|. +.|+ +|++.|+|+++.+.+.+.|.. ... +|.+ +.-++++|
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~----------~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~---~~~~---~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLR----------RSGFKGKIYGYDINPESISKAVDLGIIDEGT---TSIA---KVEDFSPD 96 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHTTSCSEEE---SCTT---GGGGGCCS
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCCCCCEEEEEECCHHHHHHHHHCCCcchhc---CCHH---HHhhccCC
Confidence 368999999999999999997 6788 899999999999988877653 122 1211 10246899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
.|+++++.+...-.+......+.++ .+++-+.
T Consensus 97 vVilavp~~~~~~vl~~l~~~l~~~-~iv~d~~ 128 (314)
T 3ggo_A 97 FVMLSSPVRTFREIAKKLSYILSED-ATVTDQG 128 (314)
T ss_dssp EEEECSCGGGHHHHHHHHHHHSCTT-CEEEECC
T ss_pred EEEEeCCHHHHHHHHHHHhhccCCC-cEEEECC
Confidence 9999998865332222333345555 5555444
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0075 Score=60.52 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=61.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+|.|+|.|++|..+++.|. +.|++ |.+.|+++++.+.+.+. +..+ .. +. ++ -++++|.|
T Consensus 11 m~i~iiG~G~mG~~~a~~l~----------~~g~~~v~~~~~~~~~~~~~~~~~g~~~-~~---~~---~~-~~~~~Dvv 72 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALY----------RKGFRIVQVYSRTEESARELAQKVEAEY-TT---DL---AE-VNPYAKLY 72 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSHHHHHHHHHHTTCEE-ES---CG---GG-SCSCCSEE
T ss_pred CeEEEEcCCHHHHHHHHHHH----------HCCCeEEEEEeCCHHHHHHHHHHcCCce-eC---CH---HH-HhcCCCEE
Confidence 36999999999999999997 56888 89999999999888764 5433 22 22 22 24689999
Q ss_pred EEEcCCHHHHHHHHHHHHHh-CCCCcEEEEec
Q 006034 482 MIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQ 512 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~-~~~~~iia~~~ 512 (663)
++++.++.. ..+...+++. .++ .+++-..
T Consensus 73 i~av~~~~~-~~v~~~l~~~~~~~-~ivv~~s 102 (266)
T 3d1l_A 73 IVSLKDSAF-AELLQGIVEGKREE-ALMVHTA 102 (266)
T ss_dssp EECCCHHHH-HHHHHHHHTTCCTT-CEEEECC
T ss_pred EEecCHHHH-HHHHHHHHhhcCCC-cEEEECC
Confidence 999998743 3333333332 244 4555443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.012 Score=60.69 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=77.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHH--HHH-hcCCC-----EEEecCCCHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK--ESR-KLGFP-----ILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~--~~~-~~~~~-----vi~GD~~~~~~L~~a 473 (663)
.+|.|+|.|.+|..++..|. ..|+ +|+++|.|+++.+ ... +++.. -+... +|.+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~----------~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~----- 71 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAA----------QRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS-DDPE----- 71 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE-SCGG-----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC-CCHH-----
Confidence 47999999999999999997 6677 9999999998765 221 22221 12211 2322
Q ss_pred CCCCCcEEEEEcCCH-----------HHHH----HHHHHHHHhCCCCcEEEEecChh-hHHHH-H---HcCCCeEEcC-c
Q 006034 474 GITSPKAVMIMYTDK-----------KRTI----EAVQRLRLAFPAIPIYARAQDMM-HLLDL-K---KAGATDAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd-----------~~n~----~~~~~~r~~~~~~~iia~~~~~~-~~~~l-~---~~Gad~vi~p-~ 532 (663)
.++++|.+++++... ..|. .++..+++..|+..++. +.|+- ....+ + ..+.++|+.. .
T Consensus 72 ~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~-~~Np~~~~~~~~~~~~~~~~~~vig~~~ 150 (319)
T 1lld_A 72 ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML-ITNPVDIATHVAQKLTGLPENQIFGSGT 150 (319)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE-CCSSHHHHHHHHHHHHTCCTTSEEECTT
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-ecCchHHHHHHHHHhcCCCHHHEeeccc
Confidence 356899999988321 1233 34445555677744444 55553 33333 2 3455788865 4
Q ss_pred hHHHHHHHHHHHHhcCCCH
Q 006034 533 AETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~ 551 (663)
...+.++...+...+++++
T Consensus 151 ~l~~~r~~~~~a~~~~v~~ 169 (319)
T 1lld_A 151 NLDSARLRFLIAQQTGVNV 169 (319)
T ss_dssp HHHHHHHHHHHHHHHTCCG
T ss_pred cHhHHHHHHHHHHHhCCCH
Confidence 4444444444444444444
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0046 Score=65.65 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCC-CEEEecCCCHHHHHhcC----C
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-PILYGDASRPAVLLSAG----I 475 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~-~vi~GD~~~~~~L~~a~----i 475 (663)
..+.+++|+|.|.+++.+++.+. ..|++|+++|..++.....+-.+. .++..++ .+.+.+.. +
T Consensus 202 ~P~~rL~IfGAGhva~ala~~a~----------~lg~~V~v~D~R~~~~~~~~fp~a~~~~~~~p--~~~~~~~~~~~~~ 269 (386)
T 2we8_A 202 APRPRMLVFGAIDFAAAVAQQGA----------FLGYRVTVCDARPVFATTARFPTADEVVVDWP--HRYLAAQAEAGAI 269 (386)
T ss_dssp CCCCEEEEECCSTHHHHHHHHHH----------HTTCEEEEEESCTTTSCTTTCSSSSEEEESCH--HHHHHHHHHHTCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCchhhcccccCCCceEEEeCCh--HHHHHhhccccCC
Confidence 45679999999999999999997 789999999998875432211223 4555554 55666656 7
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh----hhHHHHHHcCCC
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM----MHLLDLKKAGAT 526 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~----~~~~~l~~~Gad 526 (663)
+.-++++++|.|.+....+...+-+.. +..-|.-.-+. ...+.|++.|.+
T Consensus 270 ~~~t~vvvlTh~~~~D~~~L~~aL~~~-~~~YIG~iGSrrk~~~~~~rL~~~G~~ 323 (386)
T 2we8_A 270 DARTVVCVLTHDPKFDVPLLEVALRLP-DIAYIGAMGSRRTHEDRLARLREAGLT 323 (386)
T ss_dssp CTTCEEEECCCCHHHHHHHHHHHTTSS-CCSEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEECChHhHHHHHHHHhcCC-CCCEEEEecChhHHHHHHHHHHhCCCC
Confidence 888899999999777777666665553 13444433333 333444556753
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0083 Score=62.14 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=58.4
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+.+..++.||.+|++.++++ ++++|.||-
T Consensus 15 ~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vih 83 (342)
T 2x4g_A 15 KYAVLGATGLLGHHAARAIR----------AAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA-LRGLDGVIF 83 (342)
T ss_dssp EEEEESTTSHHHHHHHHHHH----------HTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHH-TTTCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHH-HcCCCEEEE
Confidence 6999996 999999999997 6899999999998776555555788999999999988875 457898876
Q ss_pred EcC
Q 006034 484 MYT 486 (663)
Q Consensus 484 ~~~ 486 (663)
+..
T Consensus 84 ~a~ 86 (342)
T 2x4g_A 84 SAG 86 (342)
T ss_dssp C--
T ss_pred CCc
Confidence 543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.013 Score=59.38 Aligned_cols=87 Identities=25% Similarity=0.346 Sum_probs=60.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHhcCCCE-EEecCCCH-HHHHhcCCC-CCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPI-LYGDASRP-AVLLSAGIT-SPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~~~~~v-i~GD~~~~-~~L~~a~i~-~a~ 479 (663)
+|.|+|+|++|..+++.|. +.|+ +|++.|+++++.+.+.+.|... .. +|. +. ++ ++|
T Consensus 3 ~I~iIG~G~mG~~~a~~l~----------~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~---~~~~~~-----~~~~aD 64 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLR----------RSGFKGKIYGYDINPESISKAVDLGIIDEGT---TSIAKV-----EDFSPD 64 (281)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHTTSCSEEE---SCGGGG-----GGTCCS
T ss_pred EEEEEecCHHHHHHHHHHH----------hcCCCcEEEEEeCCHHHHHHHHHCCCccccc---CCHHHH-----hcCCCC
Confidence 6899999999999999997 6677 8999999999998887766531 11 222 22 35 899
Q ss_pred EEEEEcCCHHHHHHHHHHH-HHhCCCCcEEEEe
Q 006034 480 AVMIMYTDKKRTIEAVQRL-RLAFPAIPIYARA 511 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~-r~~~~~~~iia~~ 511 (663)
.|++++..+... .++..+ ..+.++ .+++-+
T Consensus 65 vVilavp~~~~~-~v~~~l~~~l~~~-~iv~~~ 95 (281)
T 2g5c_A 65 FVMLSSPVRTFR-EIAKKLSYILSED-ATVTDQ 95 (281)
T ss_dssp EEEECSCHHHHH-HHHHHHHHHSCTT-CEEEEC
T ss_pred EEEEcCCHHHHH-HHHHHHHhhCCCC-cEEEEC
Confidence 999999876432 333333 334555 455543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.016 Score=61.12 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=71.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~~vv 482 (663)
.+|.|+|.|.+|..+++.|. +.|++|.+.|+++++++.+.+.+... .++ .+..+++ +++|.|+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~e~~~~a--~~~DvVi 86 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLR----------KGGHECVVYDLNVNAVQALEREGIAG----ARSIEEFCAKL--VKPRVVW 86 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTTCBC----CSSHHHHHHHS--CSSCEEE
T ss_pred CEEEEECchHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHCCCEE----eCCHHHHHhcC--CCCCEEE
Confidence 57999999999999999998 78999999999999999998876542 233 3344433 4569999
Q ss_pred EEcCCHHHHHHHHHHH-HHhCCCCcEEEEecCh------hhHHHHHHcCCCeE
Q 006034 483 IMYTDKKRTIEAVQRL-RLAFPAIPIYARAQDM------MHLLDLKKAGATDA 528 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~~------~~~~~l~~~Gad~v 528 (663)
+++.++... .+...+ ..+.++ .++.-..+. +..+.+++.|+..+
T Consensus 87 ~~vp~~~v~-~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v 137 (358)
T 4e21_A 87 LMVPAAVVD-SMLQRMTPLLAAN-DIVIDGGNSHYQDDIRRADQMRAQGITYV 137 (358)
T ss_dssp ECSCGGGHH-HHHHHHGGGCCTT-CEEEECSSCCHHHHHHHHHHHHTTTCEEE
T ss_pred EeCCHHHHH-HHHHHHHhhCCCC-CEEEeCCCCChHHHHHHHHHHHHCCCEEE
Confidence 999887222 222222 223444 455544432 23344556677554
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.027 Score=57.15 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=52.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC---CEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW---PFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~---~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++.|+|+|++|..+++.|. +.|+ +|.+.|+|+++.+.+.+. +..+. .++.+. ++++|
T Consensus 4 ~~I~iIG~G~mG~aia~~l~----------~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~---~~~~~~-----~~~aD 65 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLI----------ANGYDPNRICVTNRSLDKLDFFKEKCGVHTT---QDNRQG-----ALNAD 65 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHH----------HTTCCGGGEEEECSSSHHHHHHHHTTCCEEE---SCHHHH-----HSSCS
T ss_pred CEEEEEcccHHHHHHHHHHH----------HCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe---CChHHH-----HhcCC
Confidence 47999999999999999997 6677 899999999999998874 55432 122333 35789
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.|+.++..+.
T Consensus 66 vVilav~p~~ 75 (280)
T 3tri_A 66 VVVLAVKPHQ 75 (280)
T ss_dssp EEEECSCGGG
T ss_pred eEEEEeCHHH
Confidence 9999987643
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.014 Score=61.11 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=62.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEec-----------CCCHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD-----------ASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD-----------~~~~~~L~~ 472 (663)
.+|.|+|.|.+|..++..|. +.|++|.++|+++++.+.+.+.+-..+.+. .+|.+ +
T Consensus 5 mki~iiG~G~~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 71 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLA----------LKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIG---L 71 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHH---H
T ss_pred CeEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHH---H
Confidence 37999999999999999997 678999999999999998877532222332 12322 2
Q ss_pred cCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEE
Q 006034 473 AGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYAR 510 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~ 510 (663)
+ ++++|.|++++.++... .+...++. +.++..++..
T Consensus 72 ~-~~~~D~vi~~v~~~~~~-~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 72 A-VKDADVILIVVPAIHHA-SIAANIASYISEGQLIILN 108 (359)
T ss_dssp H-HTTCSEEEECSCGGGHH-HHHHHHGGGCCTTCEEEES
T ss_pred H-HhcCCEEEEeCCchHHH-HHHHHHHHhCCCCCEEEEc
Confidence 1 35799999999887543 22333333 4455334444
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0067 Score=59.03 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=52.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.++.|+|.|++|+.+++.|. +.|++|.+.|+++++.+.+.+.+..+. + ++++ ++++|.|++
T Consensus 29 ~~I~iiG~G~~G~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~-----~---~~~~-~~~~DvVi~ 89 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLV----------GSGFKVVVGSRNPKRTARLFPSAAQVT-----F---QEEA-VSSPEVIFV 89 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEEESSHHHHHHHSBTTSEEE-----E---HHHH-TTSCSEEEE
T ss_pred CEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCcee-----c---HHHH-HhCCCEEEE
Confidence 47999999999999999997 678999999999999888877665442 1 2222 468999999
Q ss_pred EcCCH
Q 006034 484 MYTDK 488 (663)
Q Consensus 484 ~~~dd 488 (663)
++..+
T Consensus 90 av~~~ 94 (215)
T 2vns_A 90 AVFRE 94 (215)
T ss_dssp CSCGG
T ss_pred CCChH
Confidence 98864
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.012 Score=59.86 Aligned_cols=90 Identities=17% Similarity=0.287 Sum_probs=62.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+|.|+|+ |++|..+++.|. +.|++|++.|+++++.+.+.+.|..+ . +..+ -++++|.|+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~g~~~---~-~~~~-----~~~~aDvVi 72 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIH----------DSAHHLAAIEIAPEGRDRLQGMGIPL---T-DGDG-----WIDEADVVV 72 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HSSSEEEEECCSHHHHHHHHHTTCCC---C-CSSG-----GGGTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHhcCCCc---C-CHHH-----HhcCCCEEE
Confidence 47999999 999999999997 67899999999999998888765332 1 1122 246899999
Q ss_pred EEcCCHHHHHHHHHHHHH-hCCCCcEEEEecCh
Q 006034 483 IMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDM 514 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~ 514 (663)
+++.++.. ..+...++. +.++ .+++-..+-
T Consensus 73 ~av~~~~~-~~v~~~l~~~l~~~-~ivv~~s~~ 103 (286)
T 3c24_A 73 LALPDNII-EKVAEDIVPRVRPG-TIVLILDAA 103 (286)
T ss_dssp ECSCHHHH-HHHHHHHGGGSCTT-CEEEESCSH
T ss_pred EcCCchHH-HHHHHHHHHhCCCC-CEEEECCCC
Confidence 99987652 222222322 3344 455544443
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.049 Score=55.99 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=78.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhc----------CCCEEEecCCCHHHHHh
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKL----------GFPILYGDASRPAVLLS 472 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~----------~~~vi~GD~~~~~~L~~ 472 (663)
+|.|+|.|.+|..++..|. +.| ++|+++|.|+++.+....+ ...+.. +|.+
T Consensus 3 kI~VIGaG~~G~~la~~L~----------~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~d~~---- 65 (309)
T 1hyh_A 3 KIGIIGLGNVGAAVAHGLI----------AQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---NDWA---- 65 (309)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SCGG----
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe---CCHH----
Confidence 6899999999999999997 556 7899999999987665531 112212 2322
Q ss_pred cCCCCCcEEEEEcCCHH---------------HHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHH---cCCCeE
Q 006034 473 AGITSPKAVMIMYTDKK---------------RTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKK---AGATDA 528 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd~---------------~n~----~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~---~Gad~v 528 (663)
.+++||.|++++.... .|+ .++..+++..|+..++. +.|+.+. ..+++ ....++
T Consensus 66 -~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~-~tNp~~~~~~~~~~~~~~~~~rv 143 (309)
T 1hyh_A 66 -ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV-ISNPVDVITALFQHVTGFPAHKV 143 (309)
T ss_dssp -GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGE
T ss_pred -HhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEE-EcCcHHHHHHHHHHhcCCCHHHE
Confidence 2578999999998754 243 34445555577755555 6666544 23333 333456
Q ss_pred EcC-chHHHHHHHHHHHHhcCCCH
Q 006034 529 ILE-NAETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 529 i~p-~~~~~~~la~~~~~~~~~~~ 551 (663)
+.- ...-..++...+-+.++.++
T Consensus 144 ig~gt~ld~~r~~~~~a~~l~~~~ 167 (309)
T 1hyh_A 144 IGTGTLLDTARMQRAVGEAFDLDP 167 (309)
T ss_dssp EECTTHHHHHHHHHHHHHHHTCCG
T ss_pred eecCccchHHHHHHHHHHHhCCCh
Confidence 655 33223344444444444444
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.015 Score=60.13 Aligned_cols=110 Identities=14% Similarity=0.223 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEec---------CCCHHHHHh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD---------ASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD---------~~~~~~L~~ 472 (663)
...+|.|+|.|.+|..++..|. +.|++|.++ .++++.+.+++.+......+ .+|.+ +
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~----------~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~---~ 83 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLA----------RAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS---A 83 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHH----------HTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG---G
T ss_pred cCCcEEEECcCHHHHHHHHHHH----------HCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH---H
Confidence 4567999999999999999997 789999999 99999999987665433111 12222 2
Q ss_pred cCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-cCCCeEE
Q 006034 473 AGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDAI 529 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~-~Gad~vi 529 (663)
++++|.+++++..... -.++..++. +.++..++...|--+..+.+.+ .+ +.++
T Consensus 84 --~~~~D~vilavk~~~~-~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~-~~vl 138 (318)
T 3hwr_A 84 --VQGADLVLFCVKSTDT-QSAALAMKPALAKSALVLSLQNGVENADTLRSLLE-QEVA 138 (318)
T ss_dssp --GTTCSEEEECCCGGGH-HHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC-SEEE
T ss_pred --cCCCCEEEEEcccccH-HHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC-CcEE
Confidence 3689999999987632 223333333 3455446666665665455544 45 5444
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.015 Score=60.92 Aligned_cols=117 Identities=17% Similarity=0.093 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCC-CEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~-~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..+.+++|+|.|.+++.+++.+. ..|++|+++|..++.....+=.+. .++.+++ ++.+.+..++.-+
T Consensus 197 ~p~~~L~I~GaGhva~aLa~la~----------~lgf~V~v~D~R~~~~~~~~fp~a~~v~~~~p--~~~~~~~~~~~~t 264 (362)
T 3on5_A 197 SPKERLIIFGAGPDVPPLVTFAS----------NVGFYTVVTDWRPNQCEKHFFPDADEIIVDFP--ADFLRKFLIRPDD 264 (362)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHH----------HHTEEEEEEESCGGGGCGGGCTTCSEEEESCH--HHHHHHSCCCTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEECCCccccccccCCCceEEecCCH--HHHHhhcCCCCCe
Confidence 35678999999999999999997 789999999999886543221233 3565544 5678888888889
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCC--CeEEcC
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA--TDAILE 531 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Ga--d~vi~p 531 (663)
+++++|.|-+....+...+-+. +..-|...-+....+.+.+.|. +.+-.|
T Consensus 265 ~vvv~TH~h~~D~~~L~~aL~~--~~~YiG~iGSr~R~~rl~~~g~~~~ri~~P 316 (362)
T 3on5_A 265 FVLIMTHHFQKDQEILHFLLEK--ELRYIGILGSKERTRRLLQNRKPPDHLYSP 316 (362)
T ss_dssp EEEECCSCHHHHHHHHHHHSSS--CCSEEEESSCHHHHHHHHTSCCCCTTEESS
T ss_pred EEEEEeCCchhhHHHHHHHhcC--CCCEEEEeCCHHHHHHHHhcCCcHhheECC
Confidence 9999999865555555444433 4566777777777777766554 234444
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0099 Score=53.72 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+++.|+|.|.+|+.+++.|. +.|.++.+.|+++++.+.+.+ .+..+. +..+.+-. ++++|.+
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~----------~~g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~----~~~~Div 84 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFS----------YPQYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSL----IKNNDVI 84 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCC----------TTTCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHH----HHTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHH----hcCCCEE
Confidence 568999999999999999997 678889999999999887654 443332 22232211 3468999
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+.+++.+
T Consensus 85 i~at~~~ 91 (144)
T 3oj0_A 85 ITATSSK 91 (144)
T ss_dssp EECSCCS
T ss_pred EEeCCCC
Confidence 9999876
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.015 Score=63.56 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=75.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++++|+|.|.+|+.+++.|.+ ..+.+|++.++++++++.+.+. +..++..|.+|.+.++++ ++++|.||
T Consensus 24 k~VlIiGAGgiG~aia~~L~~---------~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~-l~~~DvVI 93 (467)
T 2axq_A 24 KNVLLLGSGFVAQPVIDTLAA---------NDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKV-LADNDVVI 93 (467)
T ss_dssp EEEEEECCSTTHHHHHHHHHT---------STTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHH-HHTSSEEE
T ss_pred CEEEEECChHHHHHHHHHHHh---------CCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHH-HcCCCEEE
Confidence 479999999999999999972 3478999999999998887653 566778999998777653 45899999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEec-Ch---hhHHHHHHcCCC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-DM---MHLLDLKKAGAT 526 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-~~---~~~~~l~~~Gad 526 (663)
.+++..... .+...+-+.+ ..++.... ++ ...+..++.|+.
T Consensus 94 n~tp~~~~~-~v~~a~l~~g--~~vvd~~~~~p~~~~Ll~~Ak~aGv~ 138 (467)
T 2axq_A 94 SLIPYTFHP-NVVKSAIRTK--TDVVTSSYISPALRELEPEIVKAGIT 138 (467)
T ss_dssp ECSCGGGHH-HHHHHHHHHT--CEEEECSCCCHHHHHHHHHHHHHTCE
T ss_pred ECCchhhhH-HHHHHHHhcC--CEEEEeecCCHHHHHHHHHHHHcCCE
Confidence 998865321 2233333332 23333222 22 233456777874
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0097 Score=64.74 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=75.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++++|+|.|.+|+.+++.|. +.|++|++.|+++++++.+.+. +...+.+|.+|.+.++++ ++++|.|
T Consensus 4 k~VlViGaG~iG~~ia~~L~----------~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~-l~~~DvV 72 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLT----------DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE-VAKHDLV 72 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------TTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHH-HTTSSEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHH-HcCCcEE
Confidence 46899999999999999998 6789999999999998877653 345788999998877654 4589999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEec-C---hhhHHHHHHcCCCeE
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-D---MMHLLDLKKAGATDA 528 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-~---~~~~~~l~~~Gad~v 528 (663)
+.+++..... .+...+-+. +..++.... + .+..+..++.|+..+
T Consensus 73 In~a~~~~~~-~i~~a~l~~--g~~vvd~~~~~~~~~~l~~aA~~aGv~~i 120 (450)
T 1ff9_A 73 ISLIPYTFHA-TVIKSAIRQ--KKHVVTTSYVSPAMMELDQAAKDAGITVM 120 (450)
T ss_dssp EECCC--CHH-HHHHHHHHH--TCEEEESSCCCHHHHHTHHHHHHTTCEEE
T ss_pred EECCccccch-HHHHHHHhC--CCeEEEeecccHHHHHHHHHHHHCCCeEE
Confidence 9988864221 122222222 234554432 2 234456677888644
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.032 Score=61.06 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=74.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCC--EEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~--vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+|-|+|.|.+|..+++.|. +.|++|++.|+++++++.+.+.+.. -+.+-.+-++..+ .++++|.|
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~--~l~~aDvV 72 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMN----------DHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVS--KLKKPRRI 72 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH--TBCSSCEE
T ss_pred CEEEEEChhHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHh--hccCCCEE
Confidence 47999999999999999998 7899999999999999998875321 1122222233333 35689999
Q ss_pred EEEcCCHHHHHHHHHHH-HHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQRL-RLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p 531 (663)
+++.++++..-.++..+ ..+.++ .++.-..+. +..+.+++.|+..+=.|
T Consensus 73 il~Vp~~~~v~~vl~~l~~~L~~g-~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~p 128 (484)
T 4gwg_A 73 ILLVKAGQAVDDFIEKLVPLLDTG-DIIIDGGNSEYRDTTRRCRDLKAKGILFVGSG 128 (484)
T ss_dssp EECSCSSHHHHHHHHHHGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEecCChHHHHHHHHHHHHhcCCC-CEEEEcCCCCchHHHHHHHHHHhhccccccCC
Confidence 99998853322222223 333444 566544432 22345666788655444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0064 Score=64.43 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=66.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|.|.+|+.+++.+. ..|.+|+++|+++++.+.+.+ .+.. ++.|.++.+.++++ ++++|.+
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~----------~~Ga~V~~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~~-~~~~DvV 233 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIAL----------GMGAQVTILDVNHKRLQYLDDVFGGR-VITLTATEANIKKS-VQHADLL 233 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTTTS-EEEEECCHHHHHHH-HHHCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHhcCce-EEEecCCHHHHHHH-HhCCCEE
Confidence 368999999999999999997 789999999999999887765 4544 56777777766654 4589999
Q ss_pred EEEcCCHHH---HHHHHHHHHHhCCCCcEEE
Q 006034 482 MIMYTDKKR---TIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 482 v~~~~dd~~---n~~~~~~~r~~~~~~~iia 509 (663)
+.++..+.. .+.....++.+.+...++-
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEE
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEE
Confidence 888875431 1112234455555534443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.011 Score=58.65 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--------------HHHHHhc-CCCEEEecCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--------------VKESRKL-GFPILYGDASR 466 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--------------~~~~~~~-~~~vi~GD~~~ 466 (663)
...+|.|+|.|++|..+++.|. +.|++|++.|+++++ .+.+.+. +... .. +.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~ 84 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALA----------DLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH-LA--AF 84 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE-EE--EH
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee-cc--CH
Confidence 4568999999999999999998 789999999999997 4555432 2222 11 22
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHH-HHHhCCCCcEEEEec
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQR-LRLAFPAIPIYARAQ 512 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~-~r~~~~~~~iia~~~ 512 (663)
.+.+ +++|.|++++.++...-.+... ...+ ++ +++.-+.
T Consensus 85 ~e~~-----~~aDvVilavp~~~~~~~~~~i~~~~l-~g-~ivi~~s 124 (245)
T 3dtt_A 85 ADVA-----AGAELVVNATEGASSIAALTAAGAENL-AG-KILVDIA 124 (245)
T ss_dssp HHHH-----HHCSEEEECSCGGGHHHHHHHHCHHHH-TT-SEEEECC
T ss_pred HHHH-----hcCCEEEEccCcHHHHHHHHHhhhhhc-CC-CEEEECC
Confidence 3333 4689999999876433222222 2223 55 4555555
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.053 Score=59.64 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cC--CCEEEecCCCHHHHHhcCCCC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LG--FPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~--~~vi~GD~~~~~~L~~a~i~~ 477 (663)
....+|-|+|.|.+|..+++.|. +.|++|.+.|+++++++.+.+ .. ..+ .. .++.+-+- .++++
T Consensus 8 ~~~~~IgvIGlG~MG~~lA~~La----------~~G~~V~v~dr~~~~~~~l~~~~~~~~gi-~~-~~s~~e~v-~~l~~ 74 (497)
T 2p4q_A 8 HMSADFGLIGLAVMGQNLILNAA----------DHGFTVCAYNRTQSKVDHFLANEAKGKSI-IG-ATSIEDFI-SKLKR 74 (497)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSHHHHHHHHTTTTTSSE-EC-CSSHHHHH-HTSCS
T ss_pred cCCCCEEEEeeHHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHcccccCCCe-EE-eCCHHHHH-hcCCC
Confidence 46678999999999999999998 789999999999999998876 21 112 11 23333221 24567
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChh------hHHHHHHcCCCeEEcC
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMM------HLLDLKKAGATDAILE 531 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~------~~~~l~~~Gad~vi~p 531 (663)
+|.|++++.++...-.++..+.. +.|+ .++.-..+-. ..+.+.+.|+..+-.|
T Consensus 75 aDvVil~Vp~~~~v~~vl~~l~~~l~~g-~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 75 PRKVMLLVKAGAPVDALINQIVPLLEKG-DIIIDGGNSHFPDSNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp SCEEEECCCSSHHHHHHHHHHGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEcCChHHHHHHHHHHHHhCCCC-CEEEECCCCChhHHHHHHHHHHHcCCceeCCC
Confidence 99999999885332222333333 3444 4555443321 2233455677654333
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.011 Score=60.17 Aligned_cols=41 Identities=24% Similarity=0.492 Sum_probs=37.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 454 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~ 454 (663)
++|.|+|.|.+|..+|+.|. +.|++|++.|.|+++.+.+.+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~~~~~~~ 45 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTA----------FHGFAVTAYDINTDALDAAKK 45 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHH
Confidence 57999999999999999998 789999999999998877664
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.034 Score=56.55 Aligned_cols=67 Identities=28% Similarity=0.550 Sum_probs=52.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~vv~ 483 (663)
+|.|+|.|++|..+++.|. +.|++|.+.|+|+++.+.+.+.+..+ .++. +.+ +++|.|++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~Dvvi~ 62 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLM----------KHGYPLIIYDVFPDACKEFQDAGEQV----VSSPADVA-----EKADRIIT 62 (296)
T ss_dssp CEEEECCSTTHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHTTTCEE----CSSHHHHH-----HHCSEEEE
T ss_pred eEEEEeccHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHHH-----hcCCEEEE
Confidence 5889999999999999997 67899999999999999888766432 1233 333 35799999
Q ss_pred EcCCHHH
Q 006034 484 MYTDKKR 490 (663)
Q Consensus 484 ~~~dd~~ 490 (663)
+++++..
T Consensus 63 ~vp~~~~ 69 (296)
T 2gf2_A 63 MLPTSIN 69 (296)
T ss_dssp CCSSHHH
T ss_pred eCCCHHH
Confidence 9876544
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.02 Score=56.79 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=51.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC----CEEEEeCChHHHHHHHh-cCCCEEEecCCC-HHHHHhcCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW----PFVAFDLNPSVVKESRK-LGFPILYGDASR-PAVLLSAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~----~vvvid~d~~~~~~~~~-~~~~vi~GD~~~-~~~L~~a~i~~ 477 (663)
.+|.|+|.|++|..+++.|. +.|+ +|.+.|+|+++.+.+.+ .+..+ .++ .+.+ ++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~----------~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~-----~~ 63 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMI----------NKNIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVA-----KN 63 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHH-----HH
T ss_pred CeEEEECccHHHHHHHHHHH----------hCCCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHH-----Hh
Confidence 46999999999999999997 6777 99999999999988875 45442 223 3333 35
Q ss_pred CcEEEEEcCCH
Q 006034 478 PKAVMIMYTDK 488 (663)
Q Consensus 478 a~~vv~~~~dd 488 (663)
+|.|+++++.+
T Consensus 64 aDvVilav~~~ 74 (247)
T 3gt0_A 64 ADILILSIKPD 74 (247)
T ss_dssp CSEEEECSCTT
T ss_pred CCEEEEEeCHH
Confidence 78888888654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.017 Score=56.72 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=57.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|.|. |.+|+.+++.|. +. |++|+++++++++.+.+ ..+..++.+|.+|++.++++ +++.|
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~----------~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~-~~~~d 71 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLK----------EGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPA-FQGID 71 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHH----------HTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHH-HTTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHH----------hcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHH-HcCCC
Confidence 356899985 999999999997 45 89999999999877655 35688999999999988775 35688
Q ss_pred EEEEEc
Q 006034 480 AVMIMY 485 (663)
Q Consensus 480 ~vv~~~ 485 (663)
.+|-+.
T Consensus 72 ~vi~~a 77 (253)
T 1xq6_A 72 ALVILT 77 (253)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 887654
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.011 Score=60.82 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=74.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHH--hcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLL--SAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~--~a~i~~a~~ 480 (663)
-+|.|+|.|.+|..++..|. .|++|.++++++++.+.+++.|..+. .+..+ +.... +...+++|.
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-----------~g~~V~~~~r~~~~~~~l~~~G~~~~-~~~~~~~~~~~~~~~~~~~~D~ 70 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-----------LYHDVTVVTRRQEQAAAIQSEGIRLY-KGGEEFRADCSADTSINSDFDL 70 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-----------TTSEEEEECSCHHHHHHHHHHCEEEE-ETTEEEEECCEEESSCCSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHh-----------cCCceEEEECCHHHHHHHHhCCceEe-cCCCeecccccccccccCCCCE
Confidence 36999999999999999993 67899999999999988888776554 22210 00000 123578999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHc-CCCeE
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA-GATDA 528 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~-Gad~v 528 (663)
+++++..... -.++..++...++. |+...|--.+.+.+++. +.+.|
T Consensus 71 vilavK~~~~-~~~l~~l~~~~~~~-ivs~~nGi~~~e~l~~~~~~~~v 117 (307)
T 3ego_A 71 LVVTVKQHQL-QSVFSSLERIGKTN-ILFLQNGMGHIHDLKDWHVGHSI 117 (307)
T ss_dssp EEECCCGGGH-HHHHHHTTSSCCCE-EEECCSSSHHHHHHHTCCCSCEE
T ss_pred EEEEeCHHHH-HHHHHHhhcCCCCe-EEEecCCccHHHHHHHhCCCCcE
Confidence 9888876431 12233334444454 77777777777777775 65554
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.059 Score=59.01 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC--CCEEEecCCCH-HHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG--FPILYGDASRP-AVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~--~~vi~GD~~~~-~~L~~a~i~~a 478 (663)
.+++|.|+|.|.+|..+++.|. +.|++|.+.|+++++++.+.+.. ..+ .. .++. +..+ +++++
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La----------~~G~~V~v~~r~~~~~~~l~~~~~~~gi-~~-~~s~~e~v~--~l~~a 79 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIE----------SRGYTVSIFNRSREKTEEVIAENPGKKL-VP-YYTVKEFVE--SLETP 79 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHH----------TTTCCEEEECSSHHHHHHHHHHSTTSCE-EE-CSSHHHHHH--TBCSS
T ss_pred CCCeEEEEccHHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHhhCCCCCe-EE-eCCHHHHHh--CCCCC
Confidence 4567999999999999999998 78999999999999998887641 012 22 2233 3332 34569
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChh------hHHHHHHcCCCeE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMM------HLLDLKKAGATDA 528 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~------~~~~l~~~Gad~v 528 (663)
|.|++++.++...-.++..++. +.|+ .++.-..+-. ..+.+.+.|+..+
T Consensus 80 DvVil~Vp~~~~v~~vl~~l~~~l~~g-~iIId~s~g~~~~t~~l~~~l~~~g~~~v 135 (480)
T 2zyd_A 80 RRILLMVKAGAGTDAAIDSLKPYLDKG-DIIIDGGNTFFQDTIRRNRELSAEGFNFI 135 (480)
T ss_dssp CEEEECSCSSSHHHHHHHHHGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHCCCCee
Confidence 9999999884322222223333 3444 4555443321 2334555576544
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0077 Score=64.51 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+|+.++ ..|.+|++.|.||.+.......|+.+. + -++.+ +++|.+
T Consensus 246 ~GKTVgVIG~G~IGr~vA~~lr----------afGa~Viv~d~dp~~a~~A~~~G~~vv--~--LeElL-----~~ADIV 306 (464)
T 3n58_A 246 AGKVAVVCGYGDVGKGSAQSLA----------GAGARVKVTEVDPICALQAAMDGFEVV--T--LDDAA-----STADIV 306 (464)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHTTCEEC--C--HHHHG-----GGCSEE
T ss_pred cCCEEEEECcCHHHHHHHHHHH----------HCCCEEEEEeCCcchhhHHHhcCceec--c--HHHHH-----hhCCEE
Confidence 3467999999999999999997 789999999999988766666676553 1 13333 478987
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAI 505 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~ 505 (663)
+.++++ .++.-....+.+.+..
T Consensus 307 v~atgt--~~lI~~e~l~~MK~GA 328 (464)
T 3n58_A 307 VTTTGN--KDVITIDHMRKMKDMC 328 (464)
T ss_dssp EECCSS--SSSBCHHHHHHSCTTE
T ss_pred EECCCC--ccccCHHHHhcCCCCe
Confidence 776654 3344445666676663
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.028 Score=59.08 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=61.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE-----------EEecCCCHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-----------LYGDASRPAVLL 471 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v-----------i~GD~~~~~~L~ 471 (663)
..+|.|+|.|.+|..++..|. +.|++|.+.|+|+++++.+.+.+.+. +.. .+|. +
T Consensus 29 ~mkI~VIGaG~mG~alA~~La----------~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~---~ 94 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLA----------RKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDL---K 94 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHH----------TTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCH---H
T ss_pred CCeEEEECccHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCH---H
Confidence 347999999999999999998 78999999999999999887754221 111 1222 1
Q ss_pred hcCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEec
Q 006034 472 SAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQ 512 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~ 512 (663)
++ ++++|.+++++.... --.++..++. +.|+..++...+
T Consensus 95 ea-~~~aDvVilaVp~~~-~~~vl~~i~~~l~~~~ivvs~~k 134 (356)
T 3k96_A 95 AS-LEGVTDILIVVPSFA-FHEVITRMKPLIDAKTRIAWGTK 134 (356)
T ss_dssp HH-HTTCCEEEECCCHHH-HHHHHHHHGGGCCTTCEEEECCC
T ss_pred HH-HhcCCEEEECCCHHH-HHHHHHHHHHhcCCCCEEEEEeC
Confidence 11 467899999988652 2223333333 334533444443
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.12 Score=44.74 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=67.4
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEE
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~ii 508 (663)
..+.++.++|.|+...+.++ +.|+.+... .+..+.++...-.+.|.+++-.+- +......+..+|+.+|+++++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA-ADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 35678999999988755443 467776653 344567777766778988776553 345567888899999988888
Q ss_pred EEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 509 ARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 509 a~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
....+. +......+.|++.++...
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP 109 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKP 109 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESC
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCC
Confidence 776654 444677889999876554
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.011 Score=59.79 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=57.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.+|+|.|.|.+|+.+++.|. +.|++|++++++++.. ..+..++.||.+|++.++++--+++|.||-
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih 69 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLT----------AQGHEVTGLRRSAQPM----PAGVQTLIADVTRPDTLASIVHLRPEILVY 69 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEEECTTSCC----CTTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCcccc----ccCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence 47999999999999999998 7899999999988763 357899999999999887753335998876
Q ss_pred Ec
Q 006034 484 MY 485 (663)
Q Consensus 484 ~~ 485 (663)
+.
T Consensus 70 ~a 71 (286)
T 3gpi_A 70 CV 71 (286)
T ss_dssp CH
T ss_pred eC
Confidence 65
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.023 Score=56.78 Aligned_cols=65 Identities=26% Similarity=0.330 Sum_probs=50.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|.|++|..+++.|. +.|++|.+.|+ +++..+.+.+.|.. .+.++.+ +++|.|+
T Consensus 2 ~I~iIG~G~mG~~la~~l~----------~~g~~V~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~-----~~aDvvi 61 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLR----------SRGVEVVTSLEGRSPSTIERARTVGVT-----ETSEEDV-----YSCPVVI 61 (264)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCEEEECCTTCCHHHHHHHHHHTCE-----ECCHHHH-----HTSSEEE
T ss_pred eEEEEechHHHHHHHHHHH----------HCCCeEEEeCCccCHHHHHHHHHCCCc-----CCHHHHH-----hcCCEEE
Confidence 4889999999999999997 67899999888 77788877776654 2223333 4789999
Q ss_pred EEcCCHH
Q 006034 483 IMYTDKK 489 (663)
Q Consensus 483 ~~~~dd~ 489 (663)
+++.++.
T Consensus 62 ~~v~~~~ 68 (264)
T 1i36_A 62 SAVTPGV 68 (264)
T ss_dssp ECSCGGG
T ss_pred EECCCHH
Confidence 9988764
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.028 Score=58.08 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=59.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCCh-------HHHHHHHhcCCCEEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNP-------SVVKESRKLGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~-------~~~~~~~~~~~~vi~GD~~~~~~L~~a 473 (663)
...+|.|+|.|.+|..+++.|. +.| ++|++.|+++ +..+.+.+.|. .. .+..+.
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~----------~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~---~~-~s~~e~---- 84 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLG----------GRNAARLAAYDLRFNDPAASGALRARAAELGV---EP-LDDVAG---- 84 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHH----------TTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC---EE-ESSGGG----
T ss_pred cCCeEEEECccHHHHHHHHHHH----------HcCCCeEEEEeCCCccccchHHHHHHHHHCCC---CC-CCHHHH----
Confidence 3457999999999999999998 788 9999999998 55666666665 11 022233
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
++++|.|+++.+++...-.+......+.++ .++.-.+
T Consensus 85 -~~~aDvVi~avp~~~~~~~~~~i~~~l~~~-~ivv~~s 121 (317)
T 4ezb_A 85 -IACADVVLSLVVGAATKAVAASAAPHLSDE-AVFIDLN 121 (317)
T ss_dssp -GGGCSEEEECCCGGGHHHHHHHHGGGCCTT-CEEEECC
T ss_pred -HhcCCEEEEecCCHHHHHHHHHHHhhcCCC-CEEEECC
Confidence 356899999988764332222222223444 4555444
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.028 Score=55.21 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=58.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ .+..++.+|.+|++.++++ ...+.
T Consensus 8 ~~vlVTGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALH----------ASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 46888887 899999999998 789999999999988776654 3677889999999987764 34567
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.+|-...
T Consensus 78 d~vi~~Ag 85 (244)
T 1cyd_A 78 DLLVNNAA 85 (244)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 88876654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.013 Score=64.07 Aligned_cols=85 Identities=19% Similarity=0.315 Sum_probs=62.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|.+|+.+++.++ ..|.+|+++|.++++.+.+.+.|..+. +.+ ++ ++++|.+
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lk----------a~Ga~Viv~d~~~~~~~~A~~~Ga~~~-----~l~---e~-l~~aDvV 333 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMK----------GQGARVSVTEIDPINALQAMMEGFDVV-----TVE---EA-IGDADIV 333 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC-----CHH---HH-GGGCSEE
T ss_pred CcCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCEEe-----cHH---HH-HhCCCEE
Confidence 4568999999999999999997 788999999999999888888787532 222 21 4689999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcE
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPI 507 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~i 507 (663)
+.+++++. +......+.+.+...+
T Consensus 334 i~atgt~~--~i~~~~l~~mk~ggil 357 (494)
T 3ce6_A 334 VTATGNKD--IIMLEHIKAMKDHAIL 357 (494)
T ss_dssp EECSSSSC--SBCHHHHHHSCTTCEE
T ss_pred EECCCCHH--HHHHHHHHhcCCCcEE
Confidence 88887653 2223455666666443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.027 Score=57.21 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcCCC
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
.++++|.| .|-+|+.+++.|. +.|.+|+++++++++.+.+.+ .+..++.+|.+|++.++++ ++
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~----------~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~-~~ 187 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLA----------GEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEA-VK 187 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHH-TT
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHH-HH
Confidence 35799999 8999999999998 788999999999988766543 2567888999999877654 56
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
++|.+|-+++
T Consensus 188 ~~DvlVn~ag 197 (287)
T 1lu9_A 188 GAHFVFTAGA 197 (287)
T ss_dssp TCSEEEECCC
T ss_pred hCCEEEECCC
Confidence 7898888775
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.028 Score=56.04 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=51.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCH-HHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRP-AVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~-~~L~~a~i~~a~~vv 482 (663)
++.|+|.|++|+.+++.|. +.|++|.+.|+|+++.+.+.+. +..+ .+|. +.+ +++|.|+
T Consensus 5 ~i~iiG~G~mG~~~a~~l~----------~~g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~D~Vi 65 (259)
T 2ahr_A 5 KIGIIGVGKMASAIIKGLK----------QTPHELIISGSSLERSKEIAEQLALPY----AMSHQDLI-----DQVDLVI 65 (259)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TSSCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHH-----HTCSEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHH-----hcCCEEE
Confidence 6999999999999999997 6778999999999999888753 5442 2333 333 3789999
Q ss_pred EEcCCH
Q 006034 483 IMYTDK 488 (663)
Q Consensus 483 ~~~~dd 488 (663)
+++.++
T Consensus 66 ~~v~~~ 71 (259)
T 2ahr_A 66 LGIKPQ 71 (259)
T ss_dssp ECSCGG
T ss_pred EEeCcH
Confidence 999854
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.18 Score=51.68 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=81.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHH-h--cCC-----CEEEecCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESR-K--LGF-----PILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~-~--~~~-----~vi~GD~~~~~~L~~a~ 474 (663)
+|.|+|.|.+|..++..|. ..|+ +++++|.|+++.+... + +.. .-+.. +|. ..
T Consensus 2 kI~VIGaG~vG~~la~~la----------~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~-----~a 64 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALV----------LRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GGH-----SE 64 (304)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--ECG-----GG
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CCH-----HH
Confidence 5899999999999999997 5677 8999999998765422 2 111 11222 222 23
Q ss_pred CCCCcEEEEEcCCHH-----------HHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCCCeEEcC-chHH
Q 006034 475 ITSPKAVMIMYTDKK-----------RTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGATDAILE-NAET 535 (663)
Q Consensus 475 i~~a~~vv~~~~dd~-----------~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Gad~vi~p-~~~~ 535 (663)
+++||.||++.+... .|+. ++..+++..|+..++. +.|+.+.. .+ +....++|+-- ...-
T Consensus 65 ~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~-~tNP~~~~~~~~~~~~~~~rviG~gt~Ld 143 (304)
T 2v6b_A 65 LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV-TSNPVDLLTDLATQLAPGQPVIGSGTVLD 143 (304)
T ss_dssp GTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEE-CSSSHHHHHHHHHHHSCSSCEEECTTHHH
T ss_pred hCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEE-ecCchHHHHHHHHHhCChhcEEeCCcCch
Confidence 679999988874332 4544 3444555678865554 67766542 23 33456667655 4444
Q ss_pred HHHHHHHHHHhcCCCHHHH
Q 006034 536 SLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 536 ~~~la~~~~~~~~~~~~~~ 554 (663)
..++...+-+.+++++..+
T Consensus 144 ~~r~~~~la~~l~v~~~~v 162 (304)
T 2v6b_A 144 SARFRHLMAQHAGVDGTHA 162 (304)
T ss_dssp HHHHHHHHHHHHTSCGGGE
T ss_pred HHHHHHHHHHHhCcCHHHc
Confidence 4566666666666666433
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.035 Score=54.08 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=53.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEE-EeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+|.|+|.|++|..+++.|. +.|++|++ .|+|+++.+.+.+ .+..... ++.+. ++++|.+
T Consensus 24 mkI~IIG~G~mG~~la~~l~----------~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~---~~~~~-----~~~aDvV 85 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFT----------AAQIPAIIANSRGPASLSSVTDRFGASVKA---VELKD-----ALQADVV 85 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHH----------HTTCCEEEECTTCGGGGHHHHHHHTTTEEE---CCHHH-----HTTSSEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCCHHHHHHHHHHhCCCccc---ChHHH-----HhcCCEE
Confidence 47999999999999999997 67899999 9999999888765 4555443 23333 3678999
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
++++..+
T Consensus 86 ilavp~~ 92 (220)
T 4huj_A 86 ILAVPYD 92 (220)
T ss_dssp EEESCGG
T ss_pred EEeCChH
Confidence 9998864
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.017 Score=59.58 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=57.7
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEE-EecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPIL-YGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi-~GD~~~~~~L~~ 472 (663)
..++++|.|. |-+|+.+++.|. +.|++|++++++++..+.+.+ .+..++ .+|.+|++.+++
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLL----------EHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHH----------HCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 3457999998 999999999997 689999999999887655432 245566 799999998876
Q ss_pred cCCCCCcEEEEEc
Q 006034 473 AGITSPKAVMIMY 485 (663)
Q Consensus 473 a~i~~a~~vv~~~ 485 (663)
+ +++.|.||-+.
T Consensus 80 ~-~~~~d~vih~A 91 (342)
T 1y1p_A 80 V-IKGAAGVAHIA 91 (342)
T ss_dssp T-TTTCSEEEECC
T ss_pred H-HcCCCEEEEeC
Confidence 5 45789887654
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.041 Score=56.65 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=68.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--ecC--------CCHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GDA--------SRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--GD~--------~~~~~L~~a 473 (663)
.+|.|+|.|.+|..++..|. +.|++|.++++++ .+.+++.|..+-. |+. ++++ +
T Consensus 3 mkI~IiGaGaiG~~~a~~L~----------~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~---~- 66 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQ----------RSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPE---E- 66 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHH----------HTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHH---H-
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHH---H-
Confidence 36999999999999999997 6789999999987 3667776654432 211 2332 2
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-cCCCe
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATD 527 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~-~Gad~ 527 (663)
++++|.+++++...... .++..++. +.++..++...|--++.+.+.+ .+-+.
T Consensus 67 -~~~~D~vilavk~~~~~-~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~~~ 120 (312)
T 3hn2_A 67 -IGPMDLVLVGLKTFANS-RYEELIRPLVEEGTQILTLQNGLGNEEALATLFGAER 120 (312)
T ss_dssp -HCCCSEEEECCCGGGGG-GHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCGGG
T ss_pred -cCCCCEEEEecCCCCcH-HHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCCCc
Confidence 35899999988764322 23334443 4566556666666555555544 44333
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.028 Score=58.73 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=51.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+|.|+|+|.+|..+++.|. +.|++|++.|+++++ .+.+.+.|..+. +.++.+ +++|.|+
T Consensus 17 ~~I~IIG~G~mG~alA~~L~----------~~G~~V~~~~~~~~~~~~~a~~~G~~~~----~~~e~~-----~~aDvVi 77 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLK----------DSGVDVTVGLRSGSATVAKAEAHGLKVA----DVKTAV-----AAADVVM 77 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHH----------HTTCCEEEECCTTCHHHHHHHHTTCEEE----CHHHHH-----HTCSEEE
T ss_pred CEEEEECchHHHHHHHHHHH----------HCcCEEEEEECChHHHHHHHHHCCCEEc----cHHHHH-----hcCCEEE
Confidence 47999999999999999997 678999999999876 566666676432 222333 4789898
Q ss_pred EEcCCHHH
Q 006034 483 IMYTDKKR 490 (663)
Q Consensus 483 ~~~~dd~~ 490 (663)
++++++..
T Consensus 78 lavp~~~~ 85 (338)
T 1np3_A 78 ILTPDEFQ 85 (338)
T ss_dssp ECSCHHHH
T ss_pred EeCCcHHH
Confidence 88887643
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.16 Score=52.68 Aligned_cols=138 Identities=16% Similarity=0.138 Sum_probs=86.2
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHH--HHHHHhcCCC-EEEecCCCHHHHHhcCCCC
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VKESRKLGFP-ILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~--~~~~~~~~~~-vi~GD~~~~~~L~~a~i~~ 477 (663)
.+|.|+| .|.+|..++..|. +.+ .+++++|.|++. +..+.+.... -+.+ .++.+-++++ +++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~----------~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~-~~~t~d~~~a-l~g 76 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMK----------MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRG-FLGQQQLEAA-LTG 76 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHH----------HCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEE-EESHHHHHHH-HTT
T ss_pred CEEEEECCCChHHHHHHHHHH----------hCCCCCEEEEEeCCCcHhHHHHhhcccccceEEE-EeCCCCHHHH-cCC
Confidence 4799999 7999999999996 456 789999988872 2233432222 2333 1222233332 568
Q ss_pred CcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH------HHHHHc-C--CCeEEcCch
Q 006034 478 PKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL------LDLKKA-G--ATDAILENA 533 (663)
Q Consensus 478 a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~------~~l~~~-G--ad~vi~p~~ 533 (663)
+|.|+.+.+. | ..|.. ++..+++.+|+..++. ..||-+. ..+++. | .++|+--..
T Consensus 77 aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv-~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~ 155 (326)
T 1smk_A 77 MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNL-ISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTM 155 (326)
T ss_dssp CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEE-CCSSHHHHHHHHHHHHHHHTCCCTTSEEECCH
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-ECCchHHHHHHHHHHHHHccCCCcccEEEEee
Confidence 8988887641 1 24443 4455677788855555 5777665 223442 3 467887765
Q ss_pred HHHHHHHHHHHHhcCCCHHHH
Q 006034 534 ETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 534 ~~~~~la~~~~~~~~~~~~~~ 554 (663)
+-..++-..+-+.+++++..+
T Consensus 156 Ld~~r~~~~la~~l~v~~~~v 176 (326)
T 1smk_A 156 LDVVRANTFVAEVLGLDPRDV 176 (326)
T ss_dssp HHHHHHHHHHHHHHTCCGGGC
T ss_pred hHHHHHHHHHHHHhCcChhhe
Confidence 556667777777778777544
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.011 Score=63.08 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=58.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++|+|+|++|+.+++.|+ ..|.+|++.|.|+.+...+...|+.+. + +++ -++++|.++
T Consensus 220 GktV~ViG~G~IGk~vA~~Lr----------a~Ga~Viv~D~dp~ra~~A~~~G~~v~-----~---Lee-al~~ADIVi 280 (435)
T 3gvp_A 220 GKQVVVCGYGEVGKGCCAALK----------AMGSIVYVTEIDPICALQACMDGFRLV-----K---LNE-VIRQVDIVI 280 (435)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC-----C---HHH-HTTTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEeCChhhhHHHHHcCCEec-----c---HHH-HHhcCCEEE
Confidence 468999999999999999998 789999999999988776666665432 1 222 245789887
Q ss_pred EEcCCHHHHHHHHHHHHHhCCC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~ 504 (663)
.++++ .++.-....+.+.++
T Consensus 281 ~atgt--~~lI~~e~l~~MK~g 300 (435)
T 3gvp_A 281 TCTGN--KNVVTREHLDRMKNS 300 (435)
T ss_dssp ECSSC--SCSBCHHHHHHSCTT
T ss_pred ECCCC--cccCCHHHHHhcCCC
Confidence 76543 233334456666666
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.016 Score=60.14 Aligned_cols=68 Identities=29% Similarity=0.404 Sum_probs=55.1
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
...++|+|.|. |-+|+.+++.|. +.|++|++++++++. .+..++.+|.+|++.++++ ++++|
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~-~~~~d 79 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALR----------TQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDA-IMGVS 79 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHH----------HTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHH-HTTCS
T ss_pred cCCCEEEEECCCChHHHHHHHHHH----------hCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHH-HhCCC
Confidence 34568999998 999999999998 789999999998865 5789999999999988775 34788
Q ss_pred EEEEEc
Q 006034 480 AVMIMY 485 (663)
Q Consensus 480 ~vv~~~ 485 (663)
.|+-+.
T Consensus 80 ~vih~A 85 (347)
T 4id9_A 80 AVLHLG 85 (347)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.036 Score=54.43 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=58.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ .+..++.+|.+|++.++++ ...+.
T Consensus 8 k~vlITGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALH----------ATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred cEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCC
Confidence 56888887 899999999998 789999999999988776654 3577889999999987764 34467
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.+|-..+
T Consensus 78 d~vi~~Ag 85 (244)
T 3d3w_A 78 DLLVNNAA 85 (244)
T ss_dssp CEEEECCC
T ss_pred CEEEECCc
Confidence 87776543
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=60.78 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=65.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCC-----C-CCEEEEeCChHHHHHHHh-cCCCEEE--ec-------C-CC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-----G-WPFVAFDLNPSVVKESRK-LGFPILY--GD-------A-SR 466 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-----~-~~vvvid~d~~~~~~~~~-~~~~vi~--GD-------~-~~ 466 (663)
-+|.|+|.|.+|..++..|. +. | ++|.++|+ +++.+.+.+ .|..+.. |+ . ++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~----------~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 77 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLA----------LRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDN 77 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHH----------HHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESC
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecC
Confidence 36999999999999999997 55 8 89999999 888888887 6755432 21 0 23
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHH
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLK 521 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~ 521 (663)
.+. ++++|.+++++.++.. ..++..++. +.++..++...|.....+.++
T Consensus 78 ~~~-----~~~~D~vil~vk~~~~-~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~ 127 (317)
T 2qyt_A 78 PAE-----VGTVDYILFCTKDYDM-ERGVAEIRPMIGQNTKILPLLNGADIAERMR 127 (317)
T ss_dssp HHH-----HCCEEEEEECCSSSCH-HHHHHHHGGGEEEEEEEEECSCSSSHHHHHT
T ss_pred ccc-----cCCCCEEEEecCcccH-HHHHHHHHhhcCCCCEEEEccCCCCcHHHHH
Confidence 332 3689999999987653 222223332 233433444455555444443
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.03 Score=55.90 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=50.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|.|++|..+++.|. +.| ++|.+.|+++++.+.+.+. +..+ ..|.. + -+ ++|.|+
T Consensus 2 ~i~iiG~G~mG~~~a~~l~----------~~g~~~v~~~~r~~~~~~~~~~~~g~~~-~~~~~------~-~~-~~D~vi 62 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLV----------KQGGYRIYIANRGAEKRERLEKELGVET-SATLP------E-LH-SDDVLI 62 (263)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHCSCEEEEECSSHHHHHHHHHHTCCEE-ESSCC------C-CC-TTSEEE
T ss_pred EEEEECchHHHHHHHHHHH----------HCCCCeEEEECCCHHHHHHHHHhcCCEE-eCCHH------H-Hh-cCCEEE
Confidence 5889999999999999997 678 8999999999999988764 6543 22221 2 24 789999
Q ss_pred EEcCC
Q 006034 483 IMYTD 487 (663)
Q Consensus 483 ~~~~d 487 (663)
+++..
T Consensus 63 ~~v~~ 67 (263)
T 1yqg_A 63 LAVKP 67 (263)
T ss_dssp ECSCH
T ss_pred EEeCc
Confidence 99883
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.047 Score=56.14 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~v 481 (663)
..+|.|+|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+..+ ..+. +.+ +++|.|
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~DvV 90 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLL----------KMGHTVTVWNRTAEKCDLFIQEGARL----GRTPAEVV-----STCDIT 90 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSGGGGHHHHHTTCEE----CSCHHHHH-----HHCSEE
T ss_pred CCeEEEEcccHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHcCCEE----cCCHHHHH-----hcCCEE
Confidence 357999999999999999997 67899999999999998888766532 1222 333 468999
Q ss_pred EEEcCCHHHH
Q 006034 482 MIMYTDKKRT 491 (663)
Q Consensus 482 v~~~~dd~~n 491 (663)
++++.++...
T Consensus 91 i~av~~~~~~ 100 (316)
T 2uyy_A 91 FACVSDPKAA 100 (316)
T ss_dssp EECCSSHHHH
T ss_pred EEeCCCHHHH
Confidence 9999976543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.073 Score=54.98 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=79.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHh---cC-----CCEEEecCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRK---LG-----FPILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~---~~-----~~vi~GD~~~~~~L~~a~ 474 (663)
+|.|+|.|.+|..++..|. ..|+ +|+++|.|+++.+.... ++ ..-+.. +|.+ .
T Consensus 2 kI~VIGaG~~G~~la~~l~----------~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d~~-----~ 64 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALL----------MKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GDYA-----D 64 (319)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CCGG-----G
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe--CCHH-----H
Confidence 5899999999999999997 5677 89999999988776542 11 112222 3332 2
Q ss_pred CCCCcEEEEEcCCHH-----------HH----HHHHHHHHHhCCCCcEEEEecChhhH--HHHHHc---CCCeEEcC-ch
Q 006034 475 ITSPKAVMIMYTDKK-----------RT----IEAVQRLRLAFPAIPIYARAQDMMHL--LDLKKA---GATDAILE-NA 533 (663)
Q Consensus 475 i~~a~~vv~~~~dd~-----------~n----~~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~~---Gad~vi~p-~~ 533 (663)
+++||.|+++..... .| ..++..+++..|+..++. +.|+.+. ..+.+. ..++|+-- ..
T Consensus 65 ~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~-~tNp~~~~~~~~~~~~~~~~~rviG~~t~ 143 (319)
T 1a5z_A 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV-VTNPVDVLTYFFLKESGMDPRKVFGSGTV 143 (319)
T ss_dssp GTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE-CSSSHHHHHHHHHHHHTCCTTTEEECTTH
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eCCcHHHHHHHHHHHhCCChhhEEeeCcc
Confidence 578999999887421 12 234455566678755555 5555443 333332 34566644 33
Q ss_pred HHHHHHHHHHHHhcCCCHH
Q 006034 534 ETSLQLGSKLLKGFGVMSD 552 (663)
Q Consensus 534 ~~~~~la~~~~~~~~~~~~ 552 (663)
+-..++...+.+.+++++.
T Consensus 144 ld~~r~~~~la~~lgv~~~ 162 (319)
T 1a5z_A 144 LDTARLRTLIAQHCGFSPR 162 (319)
T ss_dssp HHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHhCcCHH
Confidence 3344555555555666553
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.077 Score=55.03 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH----HHHHHHh-------cCCCEEEecCCCHHHH
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRK-------LGFPILYGDASRPAVL 470 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~----~~~~~~~-------~~~~vi~GD~~~~~~L 470 (663)
.++|+|.|. |-+|+.+++.|. +.|++|+++++++. ..+.+.+ .+..++.||.+|++.+
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 94 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLL----------KLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTC 94 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 468999995 999999999997 78999999998543 3444443 5788999999999998
Q ss_pred HhcCCCCCcEEEEEcC
Q 006034 471 LSAGITSPKAVMIMYT 486 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~ 486 (663)
+++ ++++|.||-+..
T Consensus 95 ~~~-~~~~d~Vih~A~ 109 (351)
T 3ruf_A 95 EQV-MKGVDHVLHQAA 109 (351)
T ss_dssp HHH-TTTCSEEEECCC
T ss_pred HHH-hcCCCEEEECCc
Confidence 875 358998887654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.18 Score=52.16 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=82.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHH----HHhc------CCCEEEecCCCHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE----SRKL------GFPILYGDASRPAVL 470 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~----~~~~------~~~vi~GD~~~~~~L 470 (663)
..+|.|+|.|.+|..++..|. ..+. +++++|.|+++++. +.+. +..+..+| .
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~----------~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~--- 68 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALI----------NQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y--- 68 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G---
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H---
Confidence 457999999999999999996 4454 89999999988654 3331 22233232 2
Q ss_pred HhcCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCC--CeEEc
Q 006034 471 LSAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGA--TDAIL 530 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Ga--d~vi~ 530 (663)
..+++||.+|++.+. | ..|.. ++..+++.+|+. ++..+.||.+.- .+ +..|. .+|+-
T Consensus 69 --~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a-~vlvvtNPvd~~t~~~~k~~g~p~~rviG 145 (326)
T 3pqe_A 69 --EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDG-IFLVATNPVDILTYATWKFSGLPKERVIG 145 (326)
T ss_dssp --GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCS-EEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred --HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCe-EEEEcCChHHHHHHHHHHhcCCCHHHEEe
Confidence 246789988887642 2 34543 445566678885 455566665432 22 33353 35665
Q ss_pred C-chHHHHHHHHHHHHhcCCCHHHH
Q 006034 531 E-NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 531 p-~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
- ...-..+.-..+-+.+++++..+
T Consensus 146 ~gt~LD~~R~~~~la~~lgv~~~~V 170 (326)
T 3pqe_A 146 SGTTLDSARFRFMLSEYFGAAPQNV 170 (326)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGE
T ss_pred eccccHHHHHHHHHHHHhCCCHHHc
Confidence 4 44434555556666677777544
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.034 Score=56.44 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=60.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCC-EEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFP-ILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~-vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+|.|+|+|++|..+++.|. +. +++|.+.|+|+++.+.+.+.+.. ....|. ++. ++++|.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~----------~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~--~~~-----~~~aDv 69 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIK----------RDHPHYKIVGYNRSDRSRDIALERGIVDEATADF--KVF-----AALADV 69 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCT--TTT-----GGGCSE
T ss_pred ceEEEEeeCHHHHHHHHHHH----------hCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCH--HHh-----hcCCCE
Confidence 46999999999999999997 33 68899999999999888776543 122221 112 357899
Q ss_pred EEEEcCCHHHHHHHHHHHHH--hCCCCcEEEEec
Q 006034 481 VMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQ 512 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~--~~~~~~iia~~~ 512 (663)
|++++..+.. ..+...++. +.++ .+++-+.
T Consensus 70 Vilavp~~~~-~~v~~~l~~~~l~~~-~ivi~~~ 101 (290)
T 3b1f_A 70 IILAVPIKKT-IDFIKILADLDLKED-VIITDAG 101 (290)
T ss_dssp EEECSCHHHH-HHHHHHHHTSCCCTT-CEEECCC
T ss_pred EEEcCCHHHH-HHHHHHHHhcCCCCC-CEEEECC
Confidence 9999987654 333333333 3344 4555433
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0062 Score=61.72 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=62.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC---CCE-EEecCCCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG---FPI-LYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~---~~v-i~GD~~~~~~L~~a~i~~a~~ 480 (663)
+|.|+|.|.+|..++..|. +.|++|.++|+++++.+.+...+ ... ..-..++++.+ +++|.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~d~ 66 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALC----------KQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL-----ATSDL 66 (291)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH-----HTCSE
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCcccc-----CCCCE
Confidence 5899999999999999997 78899999999987655433222 100 11112344433 46899
Q ss_pred EEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHH
Q 006034 481 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDL 520 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l 520 (663)
+++++.++.. ..+...++. +.++..++...+.....+.+
T Consensus 67 vi~~v~~~~~-~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l 106 (291)
T 1ks9_A 67 LLVTLKAWQV-SDAVKSLASTLPVTTPILLIHNGMGTIEEL 106 (291)
T ss_dssp EEECSCGGGH-HHHHHHHHTTSCTTSCEEEECSSSCTTGGG
T ss_pred EEEEecHHhH-HHHHHHHHhhCCCCCEEEEecCCCCcHHHH
Confidence 9999988753 222333333 34554455555544333333
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.037 Score=59.87 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=38.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG 456 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~ 456 (663)
+|.|+|.|.+|..++..|. +.|++|+++|.|+++++.+.+.+
T Consensus 2 kI~VIG~G~vG~~~A~~la----------~~G~~V~~~d~~~~~~~~l~~~~ 43 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLS----------ARGHEVIGVDVSSTKIDLINQGK 43 (436)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTC
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHhCCC
Confidence 5889999999999999997 78999999999999999887643
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.039 Score=56.88 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=52.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC--hHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN--PSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d--~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+|.|+|.|.+|..+++.|. +.|+ +|.+.|++ +++.+.+.+.|..+. .+..+.+ +++|.
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~----------~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~---~~~~e~~-----~~aDv 86 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLR----------QAGAIDMAAYDAASAESWRPRAEELGVSCK---ASVAEVA-----GECDV 86 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHSCCEEEEECSSCHHHHHHHHHHTTCEEC---SCHHHHH-----HHCSE
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCCeEEEEcCCCCHHHHHHHHHCCCEEe---CCHHHHH-----hcCCE
Confidence 57999999999999999997 6788 99999997 577887777665431 1223334 35788
Q ss_pred EEEEcCCHHH
Q 006034 481 VMIMYTDKKR 490 (663)
Q Consensus 481 vv~~~~dd~~ 490 (663)
|++++.++..
T Consensus 87 Vi~~vp~~~~ 96 (312)
T 3qsg_A 87 IFSLVTAQAA 96 (312)
T ss_dssp EEECSCTTTH
T ss_pred EEEecCchhH
Confidence 8888887643
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0067 Score=59.57 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=58.8
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
++++|.| .|.+|+.+++.|. +.|+ +|++++++++..+.....+..++.+|.+|++.++++ +++.|.
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~----------~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~ 87 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEIL----------EQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASA-FQGHDV 87 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHH----------HHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGG-GSSCSE
T ss_pred CeEEEECCCcHHHHHHHHHHH----------cCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHH-hcCCCE
Confidence 4789998 4999999999997 7888 999999998765443344678899999999988765 457898
Q ss_pred EEEEcCC
Q 006034 481 VMIMYTD 487 (663)
Q Consensus 481 vv~~~~d 487 (663)
+|-+.+.
T Consensus 88 vi~~ag~ 94 (242)
T 2bka_A 88 GFCCLGT 94 (242)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 8877653
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.046 Score=56.58 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=50.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChH--HHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~--~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+|.|+|.|++|..+++.|. +.| ++|.+.|++++ +.+.+.+.|..+. . +..+.. +++
T Consensus 24 kI~iIG~G~mG~ala~~L~----------~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~-~--~~~e~~-----~~a 85 (322)
T 2izz_A 24 SVGFIGAGQLAFALAKGFT----------AAGVLAAHKIMASSPDMDLATVSALRKMGVKLT-P--HNKETV-----QHS 85 (322)
T ss_dssp CEEEESCSHHHHHHHHHHH----------HTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEE-S--CHHHHH-----HHC
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCCCcceEEEECCCccHHHHHHHHHcCCEEe-C--ChHHHh-----ccC
Confidence 6999999999999999997 566 89999999986 7888877675532 1 223333 367
Q ss_pred cEEEEEcCCH
Q 006034 479 KAVMIMYTDK 488 (663)
Q Consensus 479 ~~vv~~~~dd 488 (663)
|.|++++.++
T Consensus 86 DvVilav~~~ 95 (322)
T 2izz_A 86 DVLFLAVKPH 95 (322)
T ss_dssp SEEEECSCGG
T ss_pred CEEEEEeCHH
Confidence 8898888854
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.03 Score=59.97 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++|+|+|++|+.+++.|+ ..|.+|++.|.|+.+...+...|+.+. + ++++ ++++|.++
T Consensus 211 GktVgIiG~G~IG~~vA~~Lk----------a~Ga~Viv~D~~p~~a~~A~~~G~~~~-----s---L~ea-l~~ADVVi 271 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALR----------GFGARVVVTEVDPINALQAAMEGYQVL-----L---VEDV-VEEAHIFV 271 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC-----C---HHHH-TTTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEECCChhhhHHHHHhCCeec-----C---HHHH-HhhCCEEE
Confidence 457999999999999999998 789999999999988777776666442 2 2221 34688776
Q ss_pred EEcCCHHHHHHHHHHHHHhCCC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~ 504 (663)
.++++ .++.-....+.+.++
T Consensus 272 lt~gt--~~iI~~e~l~~MK~g 291 (436)
T 3h9u_A 272 TTTGN--DDIITSEHFPRMRDD 291 (436)
T ss_dssp ECSSC--SCSBCTTTGGGCCTT
T ss_pred ECCCC--cCccCHHHHhhcCCC
Confidence 54443 122222344555555
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.036 Score=53.55 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=42.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..++.|+|.|++|..+++.|. +.|++|.++|++++ .++++|.++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~----------~~g~~V~~~~~~~~--------------------------~~~~aD~vi 62 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFE----------IAGHEVTYYGSKDQ--------------------------ATTLGEIVI 62 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECTTCC--------------------------CSSCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHH--------------------------HhccCCEEE
Confidence 457999999999999999997 78899999998876 467899999
Q ss_pred EEcCCH
Q 006034 483 IMYTDK 488 (663)
Q Consensus 483 ~~~~dd 488 (663)
+++.++
T Consensus 63 ~av~~~ 68 (209)
T 2raf_A 63 MAVPYP 68 (209)
T ss_dssp ECSCHH
T ss_pred EcCCcH
Confidence 998844
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=63.71 Aligned_cols=82 Identities=12% Similarity=0.226 Sum_probs=58.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.+. ..|.+|++.|+++++.......+..+. + ++++ ++++|.+
T Consensus 276 ~GktVgIIG~G~IG~~vA~~l~----------~~G~~V~v~d~~~~~~~~a~~~G~~~~-----~---l~el-l~~aDiV 336 (494)
T 3d64_A 276 AGKIAVVAGYGDVGKGCAQSLR----------GLGATVWVTEIDPICALQAAMEGYRVV-----T---MEYA-ADKADIF 336 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSCHHHHHHHHTTTCEEC-----C---HHHH-TTTCSEE
T ss_pred CCCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCChHhHHHHHHcCCEeC-----C---HHHH-HhcCCEE
Confidence 3457999999999999999998 789999999999987645555565431 2 3322 5689988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~ 504 (663)
+.++.. .++.-....+.+.|+
T Consensus 337 i~~~~t--~~lI~~~~l~~MK~g 357 (494)
T 3d64_A 337 VTATGN--YHVINHDHMKAMRHN 357 (494)
T ss_dssp EECSSS--SCSBCHHHHHHCCTT
T ss_pred EECCCc--ccccCHHHHhhCCCC
Confidence 888743 233333456667666
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.079 Score=50.86 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=50.2
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-C-----CCEEEecCCCHHHHHhcCCCC
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-G-----FPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~-----~~vi~GD~~~~~~L~~a~i~~ 477 (663)
++.|+| .|.+|+.+++.|. +.|++|.++|+++++.+.+.+. + ..+-.. +..+.+ ++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~ 64 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLA----------TLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGM--KNEDAA-----EA 64 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------TTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEE--EHHHHH-----HH
T ss_pred eEEEEcCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhccccccCCCChh--hHHHHH-----hc
Confidence 588999 9999999999998 7789999999999988776652 2 112111 112223 46
Q ss_pred CcEEEEEcCCHHH
Q 006034 478 PKAVMIMYTDKKR 490 (663)
Q Consensus 478 a~~vv~~~~dd~~ 490 (663)
+|.++.++..+..
T Consensus 65 ~D~Vi~~~~~~~~ 77 (212)
T 1jay_A 65 CDIAVLTIPWEHA 77 (212)
T ss_dssp CSEEEECSCHHHH
T ss_pred CCEEEEeCChhhH
Confidence 8999999886553
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.043 Score=60.09 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh---------
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS--------- 472 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~--------- 472 (663)
..-+|.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+.+.+... .. -++.+++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la----------~~G~~V~~~d~~~~~v~~l~~~~~~i~e-~g-l~~~l~~~~~~~~l~~ 74 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLA----------DIGHDVFCLDVDQAKIDILNNGGVPIHE-PG-LKEVIARNRSAGRLRF 74 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTCCSSCC-TT-HHHHHHHHHHTTCEEE
T ss_pred CCceEEEECcCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHCCCCCcCC-CC-HHHHHHHhcccCCEEE
Confidence 4557999999999999999998 7899999999999999999875433211 11 0111211
Q ss_pred -----cCCCCCcEEEEEcCC
Q 006034 473 -----AGITSPKAVMIMYTD 487 (663)
Q Consensus 473 -----a~i~~a~~vv~~~~d 487 (663)
..+++||.++++.+.
T Consensus 75 ttd~~~a~~~aDvviiaVpt 94 (478)
T 2y0c_A 75 STDIEAAVAHGDVQFIAVGT 94 (478)
T ss_dssp ECCHHHHHHHCSEEEECCCC
T ss_pred ECCHHHHhhcCCEEEEEeCC
Confidence 123578999999876
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.038 Score=56.46 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=54.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++|+|.|. |.+|+.+++.|. +.|++|++++++++..+ +. +..++.||.+ ++.++++ ++++|.||
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~-~~--~~~~~~~Dl~-~~~~~~~-~~~~d~Vi 67 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIK----------NDGNTPIILTRSIGNKA-IN--DYEYRVSDYT-LEDLINQ-LNDVDAVV 67 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCCC--------CCEEEECCCC-HHHHHHH-TTTCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHH----------hCCCEEEEEeCCCCccc-CC--ceEEEEcccc-HHHHHHh-hcCCCEEE
Confidence 57999995 999999999998 78999999999965554 33 7899999999 9888775 45899888
Q ss_pred EEcC
Q 006034 483 IMYT 486 (663)
Q Consensus 483 ~~~~ 486 (663)
-+..
T Consensus 68 h~a~ 71 (311)
T 3m2p_A 68 HLAA 71 (311)
T ss_dssp ECCC
T ss_pred Eccc
Confidence 6653
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.033 Score=56.59 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=51.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|.|+|+|++|..+++.|. +.|++|.+.| ++++.+.+.+.+..+ ..+.+-+ ++++|.|+++
T Consensus 5 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~-~~~~~~~~~~~g~~~----~~~~~~~----~~~~D~vi~~ 65 (295)
T 1yb4_A 5 KLGFIGLGIMGSPMAINLA----------RAGHQLHVTT-IGPVADELLSLGAVN----VETARQV----TEFADIIFIM 65 (295)
T ss_dssp EEEECCCSTTHHHHHHHHH----------HTTCEEEECC-SSCCCHHHHTTTCBC----CSSHHHH----HHTCSEEEEC
T ss_pred EEEEEccCHHHHHHHHHHH----------hCCCEEEEEc-CHHHHHHHHHcCCcc----cCCHHHH----HhcCCEEEEE
Confidence 6999999999999999997 6789999999 999988887765432 1232221 2468999999
Q ss_pred cCCHHH
Q 006034 485 YTDKKR 490 (663)
Q Consensus 485 ~~dd~~ 490 (663)
++++..
T Consensus 66 vp~~~~ 71 (295)
T 1yb4_A 66 VPDTPQ 71 (295)
T ss_dssp CSSHHH
T ss_pred CCCHHH
Confidence 987654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.032 Score=58.19 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CC-CEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GW-PFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~-~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i 475 (663)
.++++|.|. |.+|+.+++.|. +. |+ +|+++++++++.+.+.+ .+..++.||.+|++.++++ +
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~----------~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~ 89 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVL----------DTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYA-L 89 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHH-T
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------hhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHH-H
Confidence 357899985 999999999997 55 87 99999999987765543 3678899999999988776 4
Q ss_pred CCCcEEEEEcC
Q 006034 476 TSPKAVMIMYT 486 (663)
Q Consensus 476 ~~a~~vv~~~~ 486 (663)
++.|.||-+..
T Consensus 90 ~~~D~Vih~Aa 100 (344)
T 2gn4_A 90 EGVDICIHAAA 100 (344)
T ss_dssp TTCSEEEECCC
T ss_pred hcCCEEEECCC
Confidence 57898877653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.02 Score=62.17 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=37.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 454 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~ 454 (663)
+|.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+
T Consensus 4 kI~VIG~G~vG~~lA~~La----------~~G~~V~~~D~~~~~v~~l~~ 43 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFA----------ELGANVRCIDTDRNKIEQLNS 43 (450)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHH----------hcCCEEEEEECCHHHHHHHHc
Confidence 6999999999999999998 789999999999999998887
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.1 Score=57.03 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=62.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC--CCEEEecCCCH-HHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG--FPILYGDASRP-AVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~--~~vi~GD~~~~-~~L~~a~i~~a~~ 480 (663)
.+|.|+|.|.+|..+++.|. +.|++|.+.|+++++++.+.+.. ..+ .. .++. +..+ +.+++|.
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~----------~~G~~V~v~dr~~~~~~~l~~~~~~~gi-~~-~~s~~e~v~--~l~~aDv 71 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVE----------SRGYTVAIYNRTTSKTEEVFKEHQDKNL-VF-TKTLEEFVG--SLEKPRR 71 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTTTSCE-EE-CSSHHHHHH--TBCSSCE
T ss_pred CcEEEEeeHHHHHHHHHHHH----------hCCCEEEEEcCCHHHHHHHHHhCcCCCe-EE-eCCHHHHHh--hccCCCE
Confidence 46999999999999999997 68999999999999998887641 112 22 2233 3332 3457999
Q ss_pred EEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEec
Q 006034 481 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQ 512 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~ 512 (663)
|++++.++...-.+...++. +.|+ .++.-..
T Consensus 72 Vilavp~~~~v~~vl~~l~~~l~~g-~iiId~s 103 (474)
T 2iz1_A 72 IMLMVQAGAATDATIKSLLPLLDIG-DILIDGG 103 (474)
T ss_dssp EEECCCTTHHHHHHHHHHGGGCCTT-CEEEECS
T ss_pred EEEEccCchHHHHHHHHHHhhCCCC-CEEEECC
Confidence 99999885432222223333 3445 3444443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.094 Score=57.39 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=61.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CC----CEEEecCCCH-HHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GF----PILYGDASRP-AVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~----~vi~GD~~~~-~~L~~a~i~~a 478 (663)
+|.|+|.|.+|..+++.|. +.|++|.+.|+++++++.+.+. +. .-+.. .+|. +..+ +++++
T Consensus 3 kIgVIG~G~mG~~lA~~La----------~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~-~~~~~e~v~--~l~~a 69 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIA----------EKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAA--SLKKP 69 (478)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHH--HBCSS
T ss_pred EEEEEChHHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE-ECCHHHHHh--cccCC
Confidence 5899999999999999997 7899999999999999888764 31 10122 2333 3333 23578
Q ss_pred cEEEEEcCCHHHHHHHHHHH-HHhCCCCcEEEEe
Q 006034 479 KAVMIMYTDKKRTIEAVQRL-RLAFPAIPIYARA 511 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~-r~~~~~~~iia~~ 511 (663)
|.|++++.++...-.++..+ ..+.++ .++.-.
T Consensus 70 DvVilaVp~~~~v~~vl~~l~~~l~~g-~iIId~ 102 (478)
T 1pgj_A 70 RKALILVQAGAATDSTIEQLKKVFEKG-DILVDT 102 (478)
T ss_dssp CEEEECCCCSHHHHHHHHHHHHHCCTT-CEEEEC
T ss_pred CEEEEecCChHHHHHHHHHHHhhCCCC-CEEEEC
Confidence 99999998853222222333 334555 444433
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.12 Score=56.57 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=69.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHH-HHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPA-VLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~-~L~~a~i~~a 478 (663)
+|.|+|.|.+|..+++.|. +.|++|.+.|+++++++.+.+ .+.. . .++.+ ..+. ++++
T Consensus 4 ~IgvIG~G~mG~~lA~~La----------~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~---~-~~~~~e~v~~--l~~a 67 (482)
T 2pgd_A 4 DIALIGLAVMGQNLILNMN----------DHGFVVCAFNRTVSKVDDFLANEAKGTKVL---G-AHSLEEMVSK--LKKP 67 (482)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHHTTTTTSSCE---E-CSSHHHHHHH--BCSS
T ss_pred eEEEEChHHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHhccccCCCeE---E-eCCHHHHHhh--ccCC
Confidence 6999999999999999997 789999999999999998876 2321 1 23332 3322 3589
Q ss_pred cEEEEEcCCHHHHHHHHHHH-HHhCCCCcEEEEec-Ch-----hhHHHHHHcCCCeEEcC
Q 006034 479 KAVMIMYTDKKRTIEAVQRL-RLAFPAIPIYARAQ-DM-----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~-~~-----~~~~~l~~~Gad~vi~p 531 (663)
|.|++++.++...-.++..+ ..+.|+ .++.-.. .. +..+.+.+.|+..+-.|
T Consensus 68 DvVilaVp~~~~v~~vl~~l~~~l~~g-~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~p 126 (482)
T 2pgd_A 68 RRIILLVKAGQAVDNFIEKLVPLLDIG-DIIIDGGNSEYRDTMRRCRDLKDKGILFVGSG 126 (482)
T ss_dssp CEEEECSCTTHHHHHHHHHHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCChHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEeCCC
Confidence 99999998853322223333 334455 4454443 22 12334455576554344
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.19 Score=51.69 Aligned_cols=136 Identities=14% Similarity=0.130 Sum_probs=86.5
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHH--HHHHHhcCCC-EEEec-C-CCHHHHHhcCCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VKESRKLGFP-ILYGD-A-SRPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~--~~~~~~~~~~-vi~GD-~-~~~~~L~~a~i~ 476 (663)
+|.|+|. |.+|+.++..|. +.+ .+++++|.|+.. +..+.+...+ -+.+- + +|.+ + .++
T Consensus 2 KI~IiGa~G~VG~~la~~L~----------~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~---~-a~~ 67 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLK----------NSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLP---D-CLK 67 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHH----------TCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHH---H-HHT
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHH---H-HhC
Confidence 5899998 999999999997 455 689999999832 2233332222 12221 1 2222 1 246
Q ss_pred CCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH------HHHHcC---CCeEEcCc
Q 006034 477 SPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL------DLKKAG---ATDAILEN 532 (663)
Q Consensus 477 ~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~------~l~~~G---ad~vi~p~ 532 (663)
+||.|+++.+. | ..|.. ++..+++.+|+..++. +.||.+.- .+++.+ .++|+--.
T Consensus 68 ~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t 146 (314)
T 1mld_A 68 GCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI-ISNPVNSTIPITAEVFKKHGVYNPNKIFGVT 146 (314)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE-CSSCHHHHHHHHHHHHHHTTCCCTTSEEECC
T ss_pred CCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-ECCCcchhHHHHHHHHHHcCCCCcceEEEee
Confidence 88988877632 1 23444 4445567788866655 67787653 366655 66788886
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
.+-..++-+.+-+.++++|..++
T Consensus 147 ~Ld~~r~~~~la~~l~v~~~~v~ 169 (314)
T 1mld_A 147 TLDIVRANAFVAELKGLDPARVS 169 (314)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCB
T ss_pred cccHHHHHHHHHHHhCcChHhEE
Confidence 65566677777778888875443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.13 Score=53.62 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=72.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|+|+|++|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+....+.|. ++.+++ .+.|+|+
T Consensus 4 rvgiIG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~--~~ll~~---~~~D~V~ 69 (344)
T 3ezy_A 4 RIGVIGLGRIGTIHAENLKM---------IDDAILYAISDVREDRLREMKEKLGVEKAYKDP--HELIED---PNVDAVL 69 (344)
T ss_dssp EEEEECCSHHHHHHHHHGGG---------STTEEEEEEECSCHHHHHHHHHHHTCSEEESSH--HHHHHC---TTCCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHh---------CCCcEEEEEECCCHHHHHHHHHHhCCCceeCCH--HHHhcC---CCCCEEE
Confidence 69999999999999999972 4677776 67999999887765 4554444332 344543 4789999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHH----HHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLD----LKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~----l~~~Gad~vi~p 531 (663)
++++++.. ...+..+-+.+ .++++. +.+.+..+. .++.|....+..
T Consensus 70 i~tp~~~h-~~~~~~al~~g--k~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~ 122 (344)
T 3ezy_A 70 VCSSTNTH-SELVIACAKAK--KHVFCEKPLSLNLADVDRMIEETKKADVILFTGF 122 (344)
T ss_dssp ECSCGGGH-HHHHHHHHHTT--CEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred EcCCCcch-HHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEee
Confidence 99988643 44444555554 357764 445444433 355677655544
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0096 Score=62.84 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEec--------CC--------
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD--------AS-------- 465 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD--------~~-------- 465 (663)
...+++|+|+|++|...++.+. ..|.+|++.|+++++.+.+.+.|..++.-| ..
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~----------~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~ 252 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAK----------RLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAER 252 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHH----------HHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHH
Confidence 3468999999999999999997 788999999999999998888766554211 11
Q ss_pred --CHHHHHhcCCCCCcEEEEEc--CC-HHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 466 --RPAVLLSAGITSPKAVMIMY--TD-KKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 466 --~~~~L~~a~i~~a~~vv~~~--~d-d~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
+.+.+++ -+.++|.+|.+. +. ....+..-..++.+.|..-++-.+
T Consensus 253 ~~~~~~l~e-~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 253 AQQQQALED-AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHH-HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhhHHHHHH-HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 1234433 368999887654 22 122334456778888774444433
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.026 Score=57.60 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=54.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|.|. |-+|+.+++.|. ++|++|++++++++........+..++.+|.+|++ ++++ ++. |.||-
T Consensus 2 ~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~-~~~-d~vih 68 (312)
T 3ko8_A 2 RIVVTGGAGFIGSHLVDKLV----------ELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYS-WGAG-IKG-DVVFH 68 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTT-TTTT-CCC-SEEEE
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCEEEEEeCCCCCchhhcCCCceEEECccccHH-HHhh-cCC-CEEEE
Confidence 5899998 999999999998 78999999999876644444567889999999999 6554 334 87776
Q ss_pred EcC
Q 006034 484 MYT 486 (663)
Q Consensus 484 ~~~ 486 (663)
+..
T Consensus 69 ~A~ 71 (312)
T 3ko8_A 69 FAA 71 (312)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.095 Score=56.01 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=68.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--------------ecCCCH-HH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--------------GDASRP-AV 469 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--------------GD~~~~-~~ 469 (663)
+|.|+|.|.+|..++..|. + |++|+++|.|+++++.+.+.+.++.. --.+|. +.
T Consensus 2 kI~VIG~G~vG~~~A~~La----------~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~ 70 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLS----------L-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA 70 (402)
T ss_dssp EEEEECCSHHHHHHHHHHT----------T-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred EEEEECCCHHHHHHHHHHh----------C-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHH
Confidence 5889999999999999997 6 89999999999999998876543210 001222 22
Q ss_pred HHhcCCCCCcEEEEEcCCHH----------HHHHHHHHHHHhCCCCcEEE-EecChhhHHHH-HHcCCCe-EEcCc
Q 006034 470 LLSAGITSPKAVMIMYTDKK----------RTIEAVQRLRLAFPAIPIYA-RAQDMMHLLDL-KKAGATD-AILEN 532 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd~----------~n~~~~~~~r~~~~~~~iia-~~~~~~~~~~l-~~~Gad~-vi~p~ 532 (663)
+ +++|.+++++..+. ....++..+.++.++.-++- ..+.+...+.+ +..+.+. +.+|+
T Consensus 71 ~-----~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~~~Pe 141 (402)
T 1dlj_A 71 Y-----KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPE 141 (402)
T ss_dssp H-----HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCC
T ss_pred h-----cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCCCeEEECCc
Confidence 3 36789999987752 12223333333766633333 34444444444 3444433 33444
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.03 Score=55.90 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=55.6
Q ss_pred CCcEEEEcC-Cc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a 473 (663)
.+.++|.|. |+ +|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-++++
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 91 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRAL----------LEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDAL 91 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHH
Confidence 356888898 75 9999999998 789999999999988665443 2467889999999876543
Q ss_pred ------CCCCCcEEEEEcC
Q 006034 474 ------GITSPKAVMIMYT 486 (663)
Q Consensus 474 ------~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 92 ~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 92 ITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHhCCCcEEEECCC
Confidence 1135677766543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.04 Score=54.75 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=54.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC--CCEEEecCCCHHHHHhc------C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG--FPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~--~~vi~GD~~~~~~L~~a------~ 474 (663)
+.++|-|. +-+|+.+++.|. ++|.+|++.|+|+++.+.+.+++ ...+++|.+|++..+++ .
T Consensus 3 K~vlVTGas~GIG~aia~~la----------~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 72 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFL----------EAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEK 72 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56788875 569999999998 89999999999999988877644 45678999998876542 2
Q ss_pred CCCCcEEEE
Q 006034 475 ITSPKAVMI 483 (663)
Q Consensus 475 i~~a~~vv~ 483 (663)
..+-|.+|-
T Consensus 73 ~g~iDiLVN 81 (247)
T 3ged_A 73 LQRIDVLVN 81 (247)
T ss_dssp HSCCCEEEE
T ss_pred cCCCCEEEE
Confidence 346676654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.05 Score=53.63 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc--CC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--GI 475 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a--~i 475 (663)
..++++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++ ..
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLH----------KLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC
T ss_pred CCCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc
Confidence 4567788876 678999999998 789999999999998877654 3567888999999877653 33
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.+|-..
T Consensus 83 ~~id~li~~A 92 (249)
T 3f9i_A 83 SNLDILVCNA 92 (249)
T ss_dssp SCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 5678776544
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.013 Score=63.73 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=60.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.+. ..|.+|++.|+++++.....+.++.+ .+ ++++ ++++|.+
T Consensus 256 ~GktVgIIG~G~IG~~vA~~l~----------~~G~~Viv~d~~~~~~~~a~~~g~~~-----~~---l~el-l~~aDiV 316 (479)
T 1v8b_A 256 SGKIVVICGYGDVGKGCASSMK----------GLGARVYITEIDPICAIQAVMEGFNV-----VT---LDEI-VDKGDFF 316 (479)
T ss_dssp TTSEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSCHHHHHHHHTTTCEE-----CC---HHHH-TTTCSEE
T ss_pred CCCEEEEEeeCHHHHHHHHHHH----------hCcCEEEEEeCChhhHHHHHHcCCEe-----cC---HHHH-HhcCCEE
Confidence 3467999999999999999997 78999999999998875566666643 12 3222 5789988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
+.++.. .++.-....+.+.|+. +++
T Consensus 317 i~~~~t--~~lI~~~~l~~MK~ga-ili 341 (479)
T 1v8b_A 317 ITCTGN--VDVIKLEHLLKMKNNA-VVG 341 (479)
T ss_dssp EECCSS--SSSBCHHHHTTCCTTC-EEE
T ss_pred EECCCh--hhhcCHHHHhhcCCCc-EEE
Confidence 887643 2333234555666663 444
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.017 Score=61.09 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=57.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++|.|. |.+|+.+++.|. +.|++|++++++++........+..++.+|.+|++.++++ ++++|.||
T Consensus 30 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~d~Vi 98 (379)
T 2c5a_A 30 LKISITGAGGFIASHIARRLK----------HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV-TEGVDHVF 98 (379)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHH-HTTCSEEE
T ss_pred CeEEEECCccHHHHHHHHHHH----------HCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHH-hCCCCEEE
Confidence 57999998 999999999997 6799999999987654333345688999999999988765 35789887
Q ss_pred EEc
Q 006034 483 IMY 485 (663)
Q Consensus 483 ~~~ 485 (663)
-+.
T Consensus 99 h~A 101 (379)
T 2c5a_A 99 NLA 101 (379)
T ss_dssp ECC
T ss_pred ECc
Confidence 664
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.034 Score=57.91 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=52.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEec---------CCCHHHHHhcC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD---------ASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD---------~~~~~~L~~a~ 474 (663)
.+|.|+|.|.+|..++..|. +.|++|.++|++ ++.+.+++.|..+...+ .+|++ +
T Consensus 4 mkI~IiGaG~~G~~~a~~L~----------~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~-- 67 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLA----------LAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAA---A-- 67 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHH----------HTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHH---H--
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHH---H--
Confidence 47999999999999999997 688999999986 67777877776543211 12333 2
Q ss_pred CCCCcEEEEEcCCH
Q 006034 475 ITSPKAVMIMYTDK 488 (663)
Q Consensus 475 i~~a~~vv~~~~dd 488 (663)
++++|.+++++...
T Consensus 68 ~~~~D~Vilavk~~ 81 (335)
T 3ghy_A 68 LGEQDVVIVAVKAP 81 (335)
T ss_dssp HCCCSEEEECCCHH
T ss_pred cCCCCEEEEeCCch
Confidence 36899999998874
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.039 Score=53.82 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhc------
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a------ 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+. +..++.+|.+|++.++++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLH----------AKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEE 74 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHH
Confidence 456888875 789999999998 7899999999999887766542 578899999999876543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 75 ~~~~id~li~~A 86 (234)
T 2ehd_A 75 AFGELSALVNNA 86 (234)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 113568776654
|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.058 Score=61.25 Aligned_cols=119 Identities=21% Similarity=0.083 Sum_probs=82.2
Q ss_pred cCCCCcEEEEcCCcc------hHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHHh----cCCCEEEecCCCHH
Q 006034 400 YEGSEPVVIVGFGQM------GQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRK----LGFPILYGDASRPA 468 (663)
Q Consensus 400 ~~~~~~viI~G~g~~------g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~~----~~~~vi~GD~~~~~ 468 (663)
+..++|||+|++|.- =+....-|+. +.+-+ ++-.++|++-. +.-+ ++++. ....++.|++...+
T Consensus 374 ~~~~~HivvC~~~~~~s~~~gl~~fvmpLRa---sn~~~-~elk~IV~lg~~~~~~-~ew~~l~nfp~iy~~~Gspl~~~ 448 (726)
T 3mt5_A 374 TVLSGHVVVCIFGDVSSALIGLRNLVMPLRA---SNFHY-HELKHIVFVGSIEYLK-REWETLHNFPKVSILPGTPLSRA 448 (726)
T ss_dssp SCCCSCEEEEEECCTTSCCCCTHHHHTGGGB---TTSCG-GGCCCEEEEECHHHHH-HHHHHHTTSSSEEEEESCTTCHH
T ss_pred hcccCcEEEEEecCCCCcchhhhhheeeccc---ccCCH-hHcCCEEEECCCccCH-HHHHHHhcCCceEEecCCcCChH
Confidence 578999999999775 3556666761 22211 12245666643 4433 33443 34667899999999
Q ss_pred HHHhcCCCCCcEEEEEcCC----------HHHHHHHHHHHHHh-------------------------------------
Q 006034 469 VLLSAGITSPKAVMIMYTD----------KKRTIEAVQRLRLA------------------------------------- 501 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~d----------d~~n~~~~~~~r~~------------------------------------- 501 (663)
-|++|||+.|+..|+.... |.+++++++..|.+
T Consensus 449 dL~~~~i~~c~~cvils~~~~~~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (726)
T 3mt5_A 449 DLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQ 528 (726)
T ss_dssp HHHHTTGGGCSEEEEEECC----------CHHHHHHHHHHHTCEEC----------------------------------
T ss_pred hHHHhCHhhCCEEEEecCCCCCcCCcccchhhhhhhhhcccccccccccccccccccccccccccccccccCccchhhhc
Confidence 9999999999988887541 45667667666654
Q ss_pred -----CCCCcEEEEecChhhHHHHHHc
Q 006034 502 -----FPAIPIYARAQDMMHLLDLKKA 523 (663)
Q Consensus 502 -----~~~~~iia~~~~~~~~~~l~~~ 523 (663)
+++++++....++.+.+.+.+.
T Consensus 529 ~~~~~~~~i~iitEL~~~sni~fl~~~ 555 (726)
T 3mt5_A 529 PSITTGVNIPIITELVNDTNVQFLDQD 555 (726)
T ss_dssp -CCEEGGGSCEEEEESCGGGGTTSCSS
T ss_pred ccccccCCCceEEEecCCccceeeeec
Confidence 3467899999999999888764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.031 Score=58.55 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCC--CCCCEEEEeCChH-------------HHHHHHhcCCCEEEecCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNT--VGWPFVAFDLNPS-------------VVKESRKLGFPILYGDASR 466 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~--~~~~vvvid~d~~-------------~~~~~~~~~~~vi~GD~~~ 466 (663)
.++|+|.|. |-+|+.+++.|. + .|++|++++++++ ........+..++.||.+|
T Consensus 10 ~~~vlVTGatG~IG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 79 (362)
T 3sxp_A 10 NQTILITGGAGFVGSNLAFHFQ----------ENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN 79 (362)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------hhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCC
Confidence 357899975 999999999997 6 8999999998664 1122223456889999999
Q ss_pred HHHHHhcCCCCCcEEEEEc
Q 006034 467 PAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~ 485 (663)
++.++++...+.|.||-+.
T Consensus 80 ~~~~~~~~~~~~D~vih~A 98 (362)
T 3sxp_A 80 PLDLRRLEKLHFDYLFHQA 98 (362)
T ss_dssp HHHHHHHTTSCCSEEEECC
T ss_pred HHHHHHhhccCCCEEEECC
Confidence 9999998677899887554
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.045 Score=56.92 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEe-------c-CCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG-------D-ASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~G-------D-~~~~~~L~~a 473 (663)
..-+|.|+|.|.+|..++..|. +.|++|.+.|+++++++.+.+.+.+. +. . .+| .++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~----------~~G~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~---~~~- 77 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLH----------ENGEEVILWARRKEIVDLINVSHTSP-YVEESKITVRATND---LEE- 77 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHHSCBT-TBTTCCCCSEEESC---GGG-
T ss_pred cCCcEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHhCCcc-cCCCCeeeEEEeCC---HHH-
Confidence 4457999999999999999997 78999999999999999888765321 00 0 012 222
Q ss_pred CCCCCcEEEEEcCCH
Q 006034 474 GITSPKAVMIMYTDK 488 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd 488 (663)
++++|.|++++.+.
T Consensus 78 -~~~aDvVil~vk~~ 91 (335)
T 1z82_A 78 -IKKEDILVIAIPVQ 91 (335)
T ss_dssp -CCTTEEEEECSCGG
T ss_pred -hcCCCEEEEECCHH
Confidence 67899999998863
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.046 Score=59.09 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC---CEEEEeCChHHHHHHHhcCCCEEEecCCCH---HHHHhcC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW---PFVAFDLNPSVVKESRKLGFPILYGDASRP---AVLLSAG 474 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~---~vvvid~d~~~~~~~~~~~~~vi~GD~~~~---~~L~~a~ 474 (663)
..+++|+|+|+|.+|+.+++.|.+ ..+. +++++|.+++..+.....+.....-+.++. +++.++
T Consensus 11 ~~~~rVlIIGaGgVG~~va~lla~---------~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aL- 80 (480)
T 2ph5_A 11 LFKNRFVILGFGCVGQALMPLIFE---------KFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGST- 80 (480)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHH---------HBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGG-
T ss_pred cCCCCEEEECcCHHHHHHHHHHHh---------CCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHH-
Confidence 466789999999999999999973 4555 799999987764434444666666665554 345443
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+++.|.||- ...+..|+.+...+.+.+. ..+-.++
T Consensus 81 l~~~DvVIN-~s~~~~~l~Im~acleaGv--~YlDTa~ 115 (480)
T 2ph5_A 81 LEENDFLID-VSIGISSLALIILCNQKGA--LYINAAT 115 (480)
T ss_dssp CCTTCEEEE-CCSSSCHHHHHHHHHHHTC--EEEESSC
T ss_pred hcCCCEEEE-CCccccCHHHHHHHHHcCC--CEEECCC
Confidence 455686654 4455678888889999864 4555543
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.071 Score=54.69 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=51.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-++.|+|+|++|+..++.|.+ ..+.+++ +.|.|+++.+. .|.. + .+.+-+.+. +++|.|+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~---------~~~~elvav~d~~~~~~~~---~g~~--~---~~~~~l~~~--~~~DvVi 70 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALRE---------APDFEIAGIVRRNPAEVPF---ELQP--F---RVVSDIEQL--ESVDVAL 70 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------CTTEEEEEEECC----------CCTT--S---CEESSGGGS--SSCCEEE
T ss_pred CEEEEECChHHHHHHHHHHhc---------CCCCEEEEEEcCCHHHHHH---cCCC--c---CCHHHHHhC--CCCCEEE
Confidence 479999999999999999972 4677877 68999987664 3433 1 122223333 7899999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
++++++. ....+..+.+.+ .+++..
T Consensus 71 iatp~~~-h~~~~~~al~aG--~~Vi~e 95 (304)
T 3bio_A 71 VCSPSRE-VERTALEILKKG--ICTADS 95 (304)
T ss_dssp ECSCHHH-HHHHHHHHHTTT--CEEEEC
T ss_pred ECCCchh-hHHHHHHHHHcC--CeEEEC
Confidence 9998653 344455555544 356654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.42 Score=48.99 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=81.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cC-----CC-EEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LG-----FP-ILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~-----~~-vi~GD~~~~~~L~~a~i 475 (663)
+|.|+|.|.+|..++..|.+ ...+++|+++|.|+++++.... +. .. -+... +|. + . +
T Consensus 2 kI~VIGaG~vG~~la~~la~--------~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~---~-~-l 67 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAE--------KQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS-NDY---A-D-T 67 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------TTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SCG---G-G-G
T ss_pred EEEEECCCHHHHHHHHHHHh--------CCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC-CCH---H-H-H
Confidence 58999999999999999972 1147899999999988765431 11 11 12221 232 2 2 6
Q ss_pred CCCcEEEEEcCCH---------H--HHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-cCC--CeEEcC-chH
Q 006034 476 TSPKAVMIMYTDK---------K--RTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILE-NAE 534 (663)
Q Consensus 476 ~~a~~vv~~~~dd---------~--~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l~~-~Ga--d~vi~p-~~~ 534 (663)
++||.++++.+.. - .|.. ++..+++..|+..++. +.|+-+. ..+++ .|. .+++-- ...
T Consensus 68 ~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv-~tNP~~~~~~~~~~~~~~~~~rviG~gt~l 146 (310)
T 1guz_A 68 ANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV-VSNPLDIMTHVAWVRSGLPKERVIGMAGVL 146 (310)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE-CCSSHHHHHHHHHHHHCSCGGGEEEECHHH
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-EcCchHHHHHHHHHhcCCChHHEEECCCch
Confidence 8999999988431 1 4443 3444555678865555 4555443 23443 333 356655 444
Q ss_pred HHHHHHHHHHHhcCCCHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~ 554 (663)
-..++.+.+-+.+++++..+
T Consensus 147 d~~r~~~~la~~l~v~~~~v 166 (310)
T 1guz_A 147 DAARFRSFIAMELGVSMQDI 166 (310)
T ss_dssp HHHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHHHHHhCCCHHHe
Confidence 44566666666667766443
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.019 Score=60.95 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|.|+.|+.+++.++ +.|++++++|.+++.- ........+.+|.+|.+.+.+.- +++|.+
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~----------~lG~~viv~d~~~~~p--~~~~ad~~~~~~~~d~~~l~~~~-~~~dvi 77 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQ----------KMGYKVVVLDPSEDCP--CRYVAHEFIQAKYDDEKALNQLG-QKCDVI 77 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCTTCT--TGGGSSEEEECCTTCHHHHHHHH-HHCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCCCh--hhhhCCEEEECCCCCHHHHHHHH-HhCCcc
Confidence 3467999999999999999998 7899999999887631 12223457789999999887763 457865
Q ss_pred EEEcCCHHHHHHHHHHHHH---hCCCCcEEEEecChhhHH-HHHHcCCCe
Q 006034 482 MIMYTDKKRTIEAVQRLRL---AFPAIPIYARAQDMMHLL-DLKKAGATD 527 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~---~~~~~~iia~~~~~~~~~-~l~~~Gad~ 527 (663)
....++ .+......+.+ ..|+...+..+.|....+ .++++|+..
T Consensus 78 ~~~~E~--~~~~~l~~l~~~~~v~p~~~~~~~~~dK~~~k~~l~~~Gip~ 125 (377)
T 3orq_A 78 TYEFEN--ISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKV 125 (377)
T ss_dssp EESSTT--SCHHHHHHHHHHSCCTTTTHHHHHHHSHHHHHHHHHHTTCCB
T ss_pred eecccc--cCHHHHHHHhhhcCCCCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 332322 22222222222 234445555556655443 677888653
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.052 Score=57.12 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=51.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCC------------CEEEecCCCHHHHHh
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF------------PILYGDASRPAVLLS 472 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~------------~vi~GD~~~~~~L~~ 472 (663)
+|.|+|.|.+|..++..|. +.|++|.++|+++++.+.+.+.+. .+.. .+|.+ +
T Consensus 17 kI~iIG~G~mG~~la~~L~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~---~ 81 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLS----------KKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF--TSDVE---K 81 (366)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE--ESCHH---H
T ss_pred eEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHcCcccccccccccccceee--eCCHH---H
Confidence 7999999999999999997 788999999999999988876431 1111 12222 1
Q ss_pred cCCCCCcEEEEEcCCH
Q 006034 473 AGITSPKAVMIMYTDK 488 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd 488 (663)
+ ++++|.|++++.++
T Consensus 82 ~-~~~aDvVilav~~~ 96 (366)
T 1evy_A 82 A-YNGAEIILFVIPTQ 96 (366)
T ss_dssp H-HTTCSSEEECCCHH
T ss_pred H-HcCCCEEEECCChH
Confidence 1 35789999998864
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.023 Score=58.65 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhcCCC--C
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSAGIT--S 477 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a~i~--~ 477 (663)
..+++|.|. |-+|+.+++.|. +.|++|++++++++......+ .+..++.+|.+|++.++++ ++ +
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~-~~~~~ 88 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWL----------PQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERA-FDSFK 88 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHG----------GGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHH-HHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHH-HhhcC
Confidence 357999987 999999999997 779999999986543211111 3567899999999877654 23 6
Q ss_pred CcEEEEEcC
Q 006034 478 PKAVMIMYT 486 (663)
Q Consensus 478 a~~vv~~~~ 486 (663)
.|+||-+..
T Consensus 89 ~D~vih~A~ 97 (330)
T 2pzm_A 89 PTHVVHSAA 97 (330)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 788776653
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.13 Score=52.52 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=35.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
++|.|+|.|.+|..+|..|. +.|++|+++|.|+++.+.+
T Consensus 16 ~~I~VIG~G~mG~~iA~~la----------~~G~~V~~~d~~~~~~~~~ 54 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAA----------ATGHTVVLVDQTEDILAKS 54 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHH
Confidence 57999999999999999997 6899999999999987764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.064 Score=55.77 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=56.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH----HHHHHH-------hcCCCEEEecCCCHHHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESR-------KLGFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~----~~~~~~-------~~~~~vi~GD~~~~~~L~ 471 (663)
++++|.|. |-+|+.+++.|. +.|++|+++++++. ..+.+. ..+..++.||.+|++.++
T Consensus 28 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 97 (352)
T 1sb8_A 28 KVWLITGVAGFIGSNLLETLL----------KLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCN 97 (352)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHH
Confidence 47999998 999999999997 67999999998653 333332 246788999999999887
Q ss_pred hcCCCCCcEEEEEcC
Q 006034 472 SAGITSPKAVMIMYT 486 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~ 486 (663)
++ ++++|.||-+..
T Consensus 98 ~~-~~~~d~vih~A~ 111 (352)
T 1sb8_A 98 NA-CAGVDYVLHQAA 111 (352)
T ss_dssp HH-HTTCSEEEECCS
T ss_pred HH-hcCCCEEEECCc
Confidence 65 347898887654
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.19 Score=51.64 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=68.9
Q ss_pred CcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
-+|.|+|+|++|+. .++.|.+ ..+.+++ +.|.|+++.+.+.+ .+.. -.+|.+.| -.++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~---------~~~~~lvav~d~~~~~~~~~~~~~g~~----~~~~~~~l----~~~~D~ 68 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAA---------ASDWTLQGAWSPTRAKALPICESWRIP----YADSLSSL----AASCDA 68 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHS---------CSSEEEEEEECSSCTTHHHHHHHHTCC----BCSSHHHH----HTTCSE
T ss_pred ceEEEECCCHHHHHHHHHHHHh---------CCCeEEEEEECCCHHHHHHHHHHcCCC----ccCcHHHh----hcCCCE
Confidence 37999999999996 8888862 4577776 88999999887665 3554 23455555 257899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEE
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAI 529 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi 529 (663)
|+++++++.. ...+..+-+.+ .++++. +.+.+..+ ..++.|+...+
T Consensus 69 V~i~tp~~~h-~~~~~~al~~G--~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 69 VFVHSSTASH-FDVVSTLLNAG--VHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp EEECSCTTHH-HHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEeCCchhH-HHHHHHHHHcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 9999987543 34444444443 356653 22333333 33556776655
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.2 Score=54.55 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=51.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cC---------CCEEEe
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LG---------FPILYG 462 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~---------~~vi~G 462 (663)
-++|.|+|.|.+|..+|..|. +.|++|+++|.|++..+...+ .+ ...-.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la----------~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i- 105 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFA----------RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF- 105 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-
T ss_pred CCEEEEECcCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-
Confidence 357999999999999999998 789999999999988766532 11 00111
Q ss_pred cCCCHHHHHhcCCCCCcEEEEEcCCHH
Q 006034 463 DASRPAVLLSAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 463 D~~~~~~L~~a~i~~a~~vv~~~~dd~ 489 (663)
.+|.+ .+++||.||.++.++.
T Consensus 106 -~~~~~-----~~~~aDlVIeaVpe~~ 126 (463)
T 1zcj_A 106 -SSSTK-----ELSTVDLVVEAVFEDM 126 (463)
T ss_dssp -ESCGG-----GGTTCSEEEECCCSCH
T ss_pred -cCCHH-----HHCCCCEEEEcCCCCH
Confidence 22322 2578999999998864
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.078 Score=52.29 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=56.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc------CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a------~i 475 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ .+..++.+|.+|++.++++ ..
T Consensus 6 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFA----------KEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46888886 789999999998 789999999999988877655 3577889999999877653 11
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.+|-..
T Consensus 76 g~id~lvn~A 85 (245)
T 1uls_A 76 GRLDGVVHYA 85 (245)
T ss_dssp SSCCEEEECC
T ss_pred CCCCEEEECC
Confidence 3567776554
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.04 Score=55.24 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=67.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++.|+|.|.+|+.+++.|. +.|.++.+.|+++++.+.+.+ .+.. . . .++++ +++|.++.
T Consensus 118 ~v~iiG~G~~g~~~a~~l~----------~~g~~v~v~~r~~~~~~~l~~~~~~~--~---~---~~~~~--~~~Divi~ 177 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALR----------EAGLEVWVWNRTPQRALALAEEFGLR--A---V---PLEKA--REARLLVN 177 (263)
T ss_dssp CEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHHTCE--E---C---CGGGG--GGCSEEEE
T ss_pred eEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccc--h---h---hHhhc--cCCCEEEE
Confidence 8999999999999999997 667799999999998877765 2432 1 1 23444 68999999
Q ss_pred EcCCHHH-HHHHHHHHHHhCCCCcEEEEecChh---hHHHHHHcCCCeEEcC
Q 006034 484 MYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMM---HLLDLKKAGATDAILE 531 (663)
Q Consensus 484 ~~~dd~~-n~~~~~~~r~~~~~~~iia~~~~~~---~~~~l~~~Gad~vi~p 531 (663)
+++.... +..-......+.++..++-...++. ..+..++.|+ .+++-
T Consensus 178 ~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~-~~v~g 228 (263)
T 2d5c_A 178 ATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGL-KVQTG 228 (263)
T ss_dssp CSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTC-EEECS
T ss_pred ccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcC-EEECc
Confidence 9987631 1000001222344433443333332 3455677888 44433
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.18 Score=52.25 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=84.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC-------CCEEEEeCC----hHHHHH----HHhcCCCEEEecCCCH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-------WPFVAFDLN----PSVVKE----SRKLGFPILYGDASRP 467 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~-------~~vvvid~d----~~~~~~----~~~~~~~vi~GD~~~~ 467 (663)
.+|.|+|. |.+|+.++..|. ..+ .+++++|.+ +++.+. +.+....+ .+|.+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~----------~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~ 74 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIA----------NGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAH 74 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHH----------TTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHH----------hCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEe
Confidence 47999998 999999999996 344 379999999 554432 33322233 2454433
Q ss_pred HHHHhcCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhC-CCCcEEEEecChhh--HHHHHHc--C--C
Q 006034 468 AVLLSAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAF-PAIPIYARAQDMMH--LLDLKKA--G--A 525 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~-~~~~iia~~~~~~~--~~~l~~~--G--a 525 (663)
+-+++ .+++||.|+.+.+- | ..|.. ++..+++.+ |+.+++.. .||.+ ...+.+. | .
T Consensus 75 ~~~~~-al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~-SNPv~~~t~~~~~~~~~~p~ 152 (329)
T 1b8p_A 75 ADPMT-AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVV-GNPANTNAYIAMKSAPSLPA 152 (329)
T ss_dssp SSHHH-HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHHHHHHTCTTSCG
T ss_pred cCcHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc-cCchHHHHHHHHHHcCCCCH
Confidence 33333 26789988776541 1 24554 445677775 88555544 46543 3344443 2 4
Q ss_pred CeEEcCchHHHHHHHHHHHHhcCCCHHHH
Q 006034 526 TDAILENAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 526 d~vi~p~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
++++.....-..++.+.+-+.+++++..+
T Consensus 153 ~~v~g~t~Ld~~r~~~~la~~lgv~~~~v 181 (329)
T 1b8p_A 153 KNFTAMLRLDHNRALSQIAAKTGKPVSSI 181 (329)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGE
T ss_pred HHEEEeecHHHHHHHHHHHHHhCcCHHHc
Confidence 46777776656666666767777777444
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.069 Score=57.51 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=56.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh----------c
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS----------A 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~----------a 473 (663)
.+.-|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+...+. .++.-++.+++ .
T Consensus 12 ~~~~ViGlGyvGlp~A~~La----------~~G~~V~~~D~~~~kv~~L~~g~~pi--~epgl~~ll~~~~~~g~l~~tt 79 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFA----------KHGVDVLGVDINQQTIDKLQNGQISI--EEPGLQEVYEEVLSSGKLKVST 79 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTCCSS--CCTTHHHHHHHHHHTTCEEEES
T ss_pred CccEEEeeCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHCCCCCc--CCCCHHHHHHhhcccCceEEeC
Confidence 35789999999999999998 78999999999999999998744333 23333333332 1
Q ss_pred CCCCCcEEEEEcCCHH
Q 006034 474 GITSPKAVMIMYTDKK 489 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~ 489 (663)
.+++||.++++.+++.
T Consensus 80 d~~~aDvvii~VpTp~ 95 (431)
T 3ojo_A 80 TPEASDVFIIAVPTPN 95 (431)
T ss_dssp SCCCCSEEEECCCCCB
T ss_pred chhhCCEEEEEeCCCc
Confidence 3568999999987753
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.26 Score=50.76 Aligned_cols=136 Identities=20% Similarity=0.185 Sum_probs=82.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH-HHh--cC----CC-EEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE-SRK--LG----FP-ILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~-~~~--~~----~~-vi~GD~~~~~~L~~a~ 474 (663)
+.+|.|+|.|.+|..++-.|.. .....+++++|.|+++.+. ..+ +. .+ -+.+| +. ..
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~--------~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~--~~-----~a 69 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQ--------QGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG--EY-----SD 69 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEEC--CG-----GG
T ss_pred CCEEEEECCCHHHHHHHHHHHc--------CCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEEC--CH-----HH
Confidence 4579999999999999998862 1122379999999988764 222 11 11 23332 22 23
Q ss_pred CCCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCCC--eEEcC-ch
Q 006034 475 ITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGAT--DAILE-NA 533 (663)
Q Consensus 475 i~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Gad--~vi~p-~~ 533 (663)
+++||.||++.+-. ..|.. ++..+++.+|+..++. +.||.+. ..+ +..|.+ +|+-- ..
T Consensus 70 ~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~s~~p~~rviG~gt~ 148 (318)
T 1ez4_A 70 CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV-AANPVDILTYATWKFSGFPKERVIGSGTS 148 (318)
T ss_dssp GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECTTH
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-eCCcHHHHHHHHHHHcCCCHHHEEecccc
Confidence 68999888876432 24544 3445566689977666 5776543 233 333444 67655 44
Q ss_pred HHHHHHHHHHHHhcCCCHHHH
Q 006034 534 ETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 534 ~~~~~la~~~~~~~~~~~~~~ 554 (663)
.-..++-+.+-+.+++++..+
T Consensus 149 LD~~R~~~~la~~lgv~~~~v 169 (318)
T 1ez4_A 149 LDSSRLRVALGKQFNVDPRSV 169 (318)
T ss_dssp HHHHHHHHHHHHHHTCCGGGE
T ss_pred chHHHHHHHHHHHhCcChhHE
Confidence 444566666666667766443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.4 Score=45.71 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--------CCCEEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--------GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--------~~~vi~GD~~~~~~L~~a 473 (663)
..++++-+|+|. |.......+ . +.+|+.+|.|++.++.+++. +..++.||..+. +..
T Consensus 55 ~~~~vLDlGcG~-G~~~~~la~----------~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~- 119 (204)
T 3njr_A 55 RGELLWDIGGGS-GSVSVEWCL----------A-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA--LAD- 119 (204)
T ss_dssp TTCEEEEETCTT-CHHHHHHHH----------T-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG--GTT-
T ss_pred CCCEEEEecCCC-CHHHHHHHH----------c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh--ccc-
Confidence 456899999987 665544443 3 78999999999998776642 466889998762 222
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM 515 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~ 515 (663)
.++.|.+++....+.. ......+.+.|+-.++....+.+
T Consensus 120 -~~~~D~v~~~~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 120 -LPLPEAVFIGGGGSQA--LYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp -SCCCSEEEECSCCCHH--HHHHHHHHSCTTCEEEEEECSHH
T ss_pred -CCCCCEEEECCcccHH--HHHHHHHhcCCCcEEEEEecCcc
Confidence 3578988766544333 45555666777766666555443
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.48 Score=41.43 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 435 VGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
...++.++|.|+...+.+. +.|+.+..- .+-.+.++...-.+.|.+++-.-.+......+..+|+.+|+++++..
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~l 81 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWA-KNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEE-SSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEE
Confidence 3467899999987755443 367776632 33455666666678898887762234556778888998998898887
Q ss_pred ecC--hhhHHHHHHcCCCeEEcCc
Q 006034 511 AQD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 511 ~~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
..+ .+......+.|++.++.-.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP 105 (142)
T 2qxy_A 82 SAYVDKDLIINSVKAGAVDYILKP 105 (142)
T ss_dssp ESCCCHHHHHHHHHHTCSCEEESS
T ss_pred ECCCCHHHHHHHHHCCcceeEeCC
Confidence 665 4456677889998766543
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.084 Score=52.54 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=55.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhcC-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAG----- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a~----- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+. +..++.+|.+|++.++++=
T Consensus 13 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 82 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALD----------KAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAID 82 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 46888876 678999999998 7899999999999887766542 5678899999998776541
Q ss_pred -CCCCcEEEEEc
Q 006034 475 -ITSPKAVMIMY 485 (663)
Q Consensus 475 -i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 83 ~~g~iD~lv~~A 94 (263)
T 3ak4_A 83 ALGGFDLLCANA 94 (263)
T ss_dssp HHTCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 12568776654
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.21 Score=52.30 Aligned_cols=109 Identities=22% Similarity=0.224 Sum_probs=72.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHH-HHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPA-VLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~-~L~~a~i~~a~~v 481 (663)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+.+..+ .+|.+ .|++ .+.|+|
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~---~~~D~V 69 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASA---------ADNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLAD---EKVDAV 69 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHT---------STTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHC---TTCCEE
T ss_pred CcEEEECcCHHHHHHHHHHHh---------CCCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcC---CCCCEE
Confidence 479999999999999999972 4577776 5599999988766666543 24444 4443 467999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~vi~p 531 (663)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|.-..+..
T Consensus 70 ~i~tp~~~h-~~~~~~al~aG--khVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~ 123 (359)
T 3e18_A 70 LIATPNDSH-KELAISALEAG--KHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQ 123 (359)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEEC
T ss_pred EEcCCcHHH-HHHHHHHHHCC--CCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 999988643 34444554554 367763 4455554443 55677655543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.36 Score=49.60 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=77.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH----hc------CCCEEEecCCCHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR----KL------GFPILYGDASRPAVLL 471 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~----~~------~~~vi~GD~~~~~~L~ 471 (663)
+.+|.|+|.|.+|..++..|. ..|+ +|+++|.|+++.+... +. ...+.. . +|.+
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la----------~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t-~d~~--- 68 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVG----------KDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-T-DDYA--- 68 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-E-SCGG---
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-C-CCHH---
Confidence 357999999999999999997 5677 8999999998776531 10 122221 1 2222
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHH-cC--CCeEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AG--ATDAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~-~G--ad~vi~p 531 (663)
.+++||.|+.+.+- | .+|. .++..+++..|+. ++..+.|+.+. ..+.+ .| .++++-.
T Consensus 69 --a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~-iii~~sNp~~~~~~~~~~~~~~~~~rviG~ 145 (317)
T 2ewd_A 69 --DISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNA-FVICITNPLDVMVSHFQKVSGLPHNKVCGM 145 (317)
T ss_dssp --GGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTS-EEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred --HhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHHHhhCCCHHHEEec
Confidence 35789999888721 1 2333 3455566667774 44445555543 23333 33 3467655
Q ss_pred c-hHHHHHHHHHHHHhcCCCH
Q 006034 532 N-AETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 532 ~-~~~~~~la~~~~~~~~~~~ 551 (663)
. .....+....+.+.+|.++
T Consensus 146 ~t~ld~~r~~~~la~~lg~~~ 166 (317)
T 2ewd_A 146 AGVLDSSRFRTFIAQHFGVNA 166 (317)
T ss_dssp CHHHHHHHHHHHHHHHHTSCG
T ss_pred cCcHHHHHHHHHHHHHhCcCh
Confidence 2 3333445555555555554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.043 Score=55.99 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=38.0
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL 455 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~ 455 (663)
...++|-|+|.|.+|..+|+.| . .|++|++.|.+++..+.+.+.
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~l----------a-aG~~V~v~d~~~~~~~~~~~~ 53 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAI----------A-SKHEVVLQDVSEKALEAAREQ 53 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHH----------H-TTSEEEEECSCHHHHHHHHHH
T ss_pred cCCCeEEEEeeCHHHHHHHHHH----------H-cCCEEEEEECCHHHHHHHHHH
Confidence 4567899999999999999999 3 789999999999998887765
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.28 Score=50.16 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=81.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHH---HHHHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSV---VKESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~---~~~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
...+|.|+|.|.+|..++..+. ..+. +++++|.|++. +..+.+...+-+.+. +| + ..++
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~----------~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t-~d---~--~~l~ 76 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAIS----------AKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS-KD---L--SASA 76 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECCC-----CHHHHHHHTCTTEEEE-SC---G--GGGT
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEe-CC---H--HHHC
Confidence 3467999999999999999886 4556 89999999852 223333222222221 23 2 2368
Q ss_pred CCcEEEEEcCC--------H--HHHH----HHHHHHHHhCCCCcEEEEecChhh--HHHHHH-cCC--CeEEcC-chHHH
Q 006034 477 SPKAVMIMYTD--------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMH--LLDLKK-AGA--TDAILE-NAETS 536 (663)
Q Consensus 477 ~a~~vv~~~~d--------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~--~~~l~~-~Ga--d~vi~p-~~~~~ 536 (663)
+||.||.+.+- | .+|. .++..+++..|+..++. +.|+.+ ...+++ .|. .+|+-- ..+-.
T Consensus 77 ~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~ 155 (303)
T 2i6t_A 77 HSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLV-ASQPVEIMTYVTWKLSTFPANRVIGIGCNLDS 155 (303)
T ss_dssp TCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-cCChHHHHHHHHHHhcCCCHHHeeCCCCCchH
Confidence 99988877521 1 2343 34555666678855444 666543 233333 343 367766 55555
Q ss_pred HHHHHHHHHhcCCCHHHHH
Q 006034 537 LQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 537 ~~la~~~~~~~~~~~~~~~ 555 (663)
.++...+-+.+++++..++
T Consensus 156 ~R~~~~la~~lgv~~~~v~ 174 (303)
T 2i6t_A 156 QRLQYIITNVLKAQTSGKE 174 (303)
T ss_dssp HHHHHHHHHTSCCTTGGGG
T ss_pred HHHHHHHHHHcCCChHHeE
Confidence 6777777777788775443
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.39 Score=49.59 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHH----HHhc-----CCCEEEecCCCHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE----SRKL-----GFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~----~~~~-----~~~vi~GD~~~~~~L 470 (663)
...+|.|+|.|.+|..++..|. ..+. +++++|.++++++- +.+. ...+..+ +.
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~----------~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~---~~--- 71 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMV----------LQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSA---EY--- 71 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC---CG---
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEEC---cH---
Confidence 4568999999999999999986 3444 89999999987653 3221 1222222 22
Q ss_pred HhcCCCCCcEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCC--CeEEc
Q 006034 471 LSAGITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGA--TDAIL 530 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Ga--d~vi~ 530 (663)
..+++||.||++.+. | +.|. .++..+++.+|+.. +..+.||.+.- .+ +..|. .+|+-
T Consensus 72 --~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~-ilvvtNPvdi~t~~~~k~~g~p~~rviG 148 (326)
T 3vku_A 72 --SDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGI-FLVAANPVDILTYATWKLSGFPKNRVVG 148 (326)
T ss_dssp --GGGTTCSEEEECCCCC----------------CHHHHHHHHHTTTCCSE-EEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred --HHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEccCchHHHHHHHHHhcCCCHHHeee
Confidence 246789988877542 2 2354 34556677788855 55556665432 23 33343 35655
Q ss_pred C-chHHHHHHHHHHHHhcCCCHHHH
Q 006034 531 E-NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 531 p-~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
- ..+-..+.-..+-+.+++++..+
T Consensus 149 ~gt~LD~~R~~~~la~~lgv~~~~V 173 (326)
T 3vku_A 149 SGTSLDTARFRQSIAKMVNVDARSV 173 (326)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGE
T ss_pred ecccCcHHHHHHHHHHHhCCCHHHC
Confidence 4 44444455566666667776544
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.05 Score=54.55 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=57.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcC------C
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG------I 475 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~------i 475 (663)
.+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+.....+.+|.+|++.++++- .
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFS----------EEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 456788876 679999999998 78999999999999887766667788999999988765431 1
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.+|-..
T Consensus 86 g~iD~lvnnA 95 (266)
T 3p19_A 86 GPADAIVNNA 95 (266)
T ss_dssp CSEEEEEECC
T ss_pred CCCCEEEECC
Confidence 3567776544
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.47 Score=48.89 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=81.8
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHH----HHhc------CCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKE----SRKL------GFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~----~~~~------~~~vi~GD~~~~~~L~~ 472 (663)
.+|.|+|.|.+|..++..|. ..+. +++++|.|+++++. +.+. ... +.+. +|.
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~----------~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~-v~~t-~d~----- 68 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLAL----------IKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFK-VRGT-NDY----- 68 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEEE-SCG-----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcE-EEEc-CCH-----
Confidence 57999999999999999996 4455 89999999987642 2221 223 3332 222
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHH-HcCC--CeEEcCc
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLK-KAGA--TDAILEN 532 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l~-~~Ga--d~vi~p~ 532 (663)
..+++||.||++.+- | ..|.. ++..+++.+|+..++.. .||.+. ..++ ..|. .+|+--.
T Consensus 69 ~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivv-tNPvd~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI-TNPLDIMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEe-cCchHHHHHHHHHhcCCCHHHEEeec
Confidence 246789988887532 2 34544 44556777888665555 555433 2333 3354 3555544
Q ss_pred -hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 -AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 -~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
.+-..++-+.+-+.+++++..++
T Consensus 148 ~~LD~~R~~~~la~~l~v~~~~v~ 171 (321)
T 3p7m_A 148 GVLDSARFRTFLADELNVSVQQVQ 171 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred cchHHHHHHHHHHHHhCcCHHHce
Confidence 33345556666666777775443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.024 Score=60.25 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEec------------C----C
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD------------A----S 465 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD------------~----~ 465 (663)
...+|+|+|+|++|...++.+. ..|.+|++.|.++++.+.+.+.|..++.-+ . +
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~----------~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s 258 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATAR----------RLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMS 258 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------
T ss_pred CCCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcc
Confidence 3468999999999999999997 789999999999999888887665543211 1 1
Q ss_pred C------HHHHHhcCCCCCcEEEEEc--CC-HHHHHHHHHHHHHhCCCCcEEEE
Q 006034 466 R------PAVLLSAGITSPKAVMIMY--TD-KKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 466 ~------~~~L~~a~i~~a~~vv~~~--~d-d~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+ .+.+.+ -+.+||.+|.+. +. ....+..-..++.+.|..-|+-.
T Consensus 259 ~~~~~~~~~~l~e-~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDv 311 (405)
T 4dio_A 259 GEYQVKQAALVAE-HIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDL 311 (405)
T ss_dssp CHHHHHHHHHHHH-HHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEET
T ss_pred hhhhhhhHhHHHH-HhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEE
Confidence 2 234444 357899777653 22 22233445677778777334433
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.08 Score=54.64 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=67.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE---ecC--------CCHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY---GDA--------SRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~---GD~--------~~~~~L~~ 472 (663)
.+|.|+|.|.+|..++..|. +.|++|.++++++ . +.+++.|..+-. |+. +|+ ++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~----------~~g~~V~~~~r~~-~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~---~~ 67 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLA----------KTGHCVSVVSRSD-Y-ETVKAKGIRIRSATLGDYTFRPAAVVRSA---AE 67 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHH----------HTTCEEEEECSTT-H-HHHHHHCEEEEETTTCCEEECCSCEESCG---GG
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCh-H-HHHHhCCcEEeecCCCcEEEeeeeeECCH---HH
Confidence 46999999999999999997 6889999999987 2 666665543321 211 122 22
Q ss_pred cCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHH-HcCCCeEE
Q 006034 473 AGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLK-KAGATDAI 529 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~-~~Gad~vi 529 (663)
+ .+++|.+++++.....- .+...++. +.++..++...|--.+.+.+. ..+.+.|+
T Consensus 68 ~-~~~~DlVilavK~~~~~-~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl 124 (320)
T 3i83_A 68 L-ETKPDCTLLCIKVVEGA-DRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVI 124 (320)
T ss_dssp C-SSCCSEEEECCCCCTTC-CHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEE
T ss_pred c-CCCCCEEEEecCCCChH-HHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEE
Confidence 2 24899999998764321 22233333 345545666666555444443 34544443
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.087 Score=52.20 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=53.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------------cCCCEEEecCCCHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------------LGFPILYGDASRPAV 469 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------------~~~~vi~GD~~~~~~ 469 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++.
T Consensus 8 k~vlITGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 77 (264)
T 2pd6_A 8 ALALVTGAGSGIGRAVSVRLA----------GEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARA 77 (264)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHH
Confidence 46888875 789999999998 789999999999988766543 246788999999987
Q ss_pred HHhc--CC----CCC-cEEEEEc
Q 006034 470 LLSA--GI----TSP-KAVMIMY 485 (663)
Q Consensus 470 L~~a--~i----~~a-~~vv~~~ 485 (663)
++++ .+ .+. |.+|-..
T Consensus 78 ~~~~~~~~~~~~g~i~d~vi~~A 100 (264)
T 2pd6_A 78 ARCLLEQVQACFSRPPSVVVSCA 100 (264)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECC
T ss_pred HHHHHHHHHHHhCCCCeEEEECC
Confidence 7653 11 233 7776554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.13 Score=52.53 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=70.5
Q ss_pred CcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
-++.|+|+|++|+. .++.|.+ ..+.+++ +.|.|+++.+.+.+ .+... .+|.+-+-+ +.|+
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~----~~D~ 69 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTK---------SERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAK----KCDC 69 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTS---------CSSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHT----TCSE
T ss_pred CcEEEEecCHHHHHHHHHHHHh---------CCCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHh----cCCE
Confidence 47999999999996 8888862 4677877 78999999888765 45543 345554433 7899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILE 531 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p 531 (663)
|+++++++.. ...+..+-+.+ .++++. +.+.+..+ ..++.|.-..+.-
T Consensus 70 V~i~tp~~~h-~~~~~~al~~g--k~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~ 124 (308)
T 3uuw_A 70 IFLHSSTETH-YEIIKILLNLG--VHVYVDKPLASTVSQGEELIELSTKKNLNLMVGF 124 (308)
T ss_dssp EEECCCGGGH-HHHHHHHHHTT--CEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred EEEeCCcHhH-HHHHHHHHHCC--CcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence 9999998644 33444444444 256653 33433333 3355566554443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.077 Score=53.76 Aligned_cols=124 Identities=8% Similarity=-0.080 Sum_probs=73.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc-C--CCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-G--FPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~-~--~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|+|.|..|+.++..|. +.|. ++.+.++++++.+.+.+. + ..+-..+. ++.. +++
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~----------~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~------~~l~-~~a 188 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLL----------DQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAF------EQLK-QSY 188 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEG------GGCC-SCE
T ss_pred CCEEEEECchHHHHHHHHHHH----------hcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeH------HHhc-CCC
Confidence 467999999999999999998 7885 899999999998877652 1 11222222 2222 689
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh---HHHHHHcCCCeEEcCchHHHHHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH---LLDLKKAGATDAILENAETSLQLGSKL 543 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~---~~~l~~~Gad~vi~p~~~~~~~la~~~ 543 (663)
|.+|.+|+....+-....-...+.|+.-++=.+.++.. .+..++.|+..+++-....-.|-+...
T Consensus 189 DiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~G~~~~~~Gl~Mlv~Qa~~~f 256 (281)
T 3o8q_A 189 DVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESF 256 (281)
T ss_dssp EEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCCHHHHHHHHTTCSEEECTHHHHHHHHHHHH
T ss_pred CEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccCHHHHHHHHCCCCEEECcHHHHHHHHHHHH
Confidence 98888887642210000001112233223334455533 345567788767777654444444333
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.5 Score=48.77 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=81.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHH----HHHhc------CCCEEEecCCCHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK----ESRKL------GFPILYGDASRPAVLL 471 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~----~~~~~------~~~vi~GD~~~~~~L~ 471 (663)
..+|.|+|.|.+|..++..|. ..+. +++++|.|+++++ .+.+. ...+ .+. +|.
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~----------~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v-~~t-~d~---- 70 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAG----------LKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKF-TGA-NDY---- 70 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCE-EEE-SSG----
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEE-EEe-CCH----
Confidence 357999999999999999997 5566 8999999998764 22221 2333 321 122
Q ss_pred hcCCCCCcEEEEEcC---------CH--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCC--CeEEcC
Q 006034 472 SAGITSPKAVMIMYT---------DK--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGA--TDAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~---------dd--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Ga--d~vi~p 531 (663)
..+++||.||++.+ +| ..|.. ++..+++.+|+.. +..+.||.+. ..+ +..|. ++++--
T Consensus 71 -~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~-iivvtNPvd~~t~~~~k~sg~p~~rviG~ 148 (324)
T 3gvi_A 71 -AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAF-VICITNPLDAMVWALQKFSGLPAHKVVGM 148 (324)
T ss_dssp -GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCE-EEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred -HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeE-EEecCCCcHHHHHHHHHhcCCCHHHEEee
Confidence 24678998888753 23 34544 4455667788854 4445555433 233 33455 356644
Q ss_pred c-hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 N-AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 ~-~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
- .+-..++-+.+-+.+++++..++
T Consensus 149 ~~~LD~~R~~~~la~~lgv~~~~v~ 173 (324)
T 3gvi_A 149 AGVLDSARFRYFLSEEFNVSVEDVT 173 (324)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred cCccHHHHHHHHHHHHhCcCHHHCe
Confidence 4 33344555666666777775443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.035 Score=57.09 Aligned_cols=67 Identities=18% Similarity=0.381 Sum_probs=50.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|++.|++++. +...+.|.... +-++.+ +++|.++
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~~----~l~ell-----~~aDvV~ 201 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIAN----------ALGMNILLYDPYPNE-ERAKEVNGKFV----DLETLL-----KESDVVT 201 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCH-HHHHHTTCEEC----CHHHHH-----HHCSEEE
T ss_pred CceEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCCCh-hhHhhcCcccc----CHHHHH-----hhCCEEE
Confidence 457999999999999999997 789999999999877 44555565321 222344 3689898
Q ss_pred EEcCCHH
Q 006034 483 IMYTDKK 489 (663)
Q Consensus 483 ~~~~dd~ 489 (663)
.+.+.++
T Consensus 202 l~~p~~~ 208 (307)
T 1wwk_A 202 IHVPLVE 208 (307)
T ss_dssp ECCCCST
T ss_pred EecCCCh
Confidence 8887654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.35 Score=49.93 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=80.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCC-------CEEEEeCCh--HHHH----HHHhcCCCEEEecCCCHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-------PFVAFDLNP--SVVK----ESRKLGFPILYGDASRPAV 469 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~-------~vvvid~d~--~~~~----~~~~~~~~vi~GD~~~~~~ 469 (663)
.+|+|+|. |.+|+.++..|. +.|+ +++++|.++ ++.+ .+.+..+.++ +|.++.+-
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~----------~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~ 73 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIA----------AGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDD 73 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHH----------TTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESC
T ss_pred CEEEEECCCCHHHHHHHHHHH----------hCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccC
Confidence 36999997 999999999997 4554 899999875 2222 2332233444 77766444
Q ss_pred HHhcCCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhC-CCCcEEEEecChh--hHHHHHHc--C--CCe
Q 006034 470 LLSAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAF-PAIPIYARAQDMM--HLLDLKKA--G--ATD 527 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~-~~~~iia~~~~~~--~~~~l~~~--G--ad~ 527 (663)
+.++ ++++|.|+.+... | +.|+.. +..+++.+ |+.+++. ..++. ......+. + ...
T Consensus 74 ~~~a-~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv-~snp~~~~~~~~~~~~~~~~p~~ 151 (327)
T 1y7t_A 74 PKVA-FKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLV-VGNPANTNALIAYKNAPGLNPRN 151 (327)
T ss_dssp HHHH-TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHHHHHHHTCTTSCGGG
T ss_pred hHHH-hCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE-eCCchhhhHHHHHHHcCCCChhh
Confidence 4433 4678988776431 1 346654 45567775 7755554 44444 22333332 1 234
Q ss_pred EEcCchHHHHHHHHHHHHhcCCCHHHH
Q 006034 528 AILENAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 528 vi~p~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
+..-....+.++.+.+-+.+++++..+
T Consensus 152 ~yg~tkl~~er~~~~~a~~~g~~~~~v 178 (327)
T 1y7t_A 152 FTAMTRLDHNRAKAQLAKKTGTGVDRI 178 (327)
T ss_dssp EEECCHHHHHHHHHHHHHHHTCCGGGE
T ss_pred eeccchHHHHHHHHHHHHHhCcChhhe
Confidence 555555556666665555556665433
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.051 Score=56.47 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=50.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|++.|+++++.+...+.+.... +-++.+ +++|.++
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~----------~~G~~V~~~d~~~~~~~~~~~~g~~~~----~l~e~l-----~~aDvVi 215 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLK----------PFGVQRFLYTGRQPRPEEAAEFQAEFV----STPELA-----AQSDFIV 215 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHG----------GGTCCEEEEESSSCCHHHHHTTTCEEC----CHHHHH-----HHCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcchhHHHhcCceeC----CHHHHH-----hhCCEEE
Confidence 457999999999999999997 789999999998876665555443321 223344 3678888
Q ss_pred EEcCCH
Q 006034 483 IMYTDK 488 (663)
Q Consensus 483 ~~~~dd 488 (663)
.+.+.+
T Consensus 216 ~~vp~~ 221 (330)
T 2gcg_A 216 VACSLT 221 (330)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 888764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.12 Score=50.12 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=55.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc--CCC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--GIT- 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a--~i~- 476 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++..+++ .+.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 71 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYD----------AEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDS 71 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred CEEEEecCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhh
Confidence 35888886 678999999998 789999999999999887765 3578899999999877653 222
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
..|.+|-..
T Consensus 72 ~~d~lv~~A 80 (230)
T 3guy_A 72 IPSTVVHSA 80 (230)
T ss_dssp CCSEEEECC
T ss_pred cCCEEEEeC
Confidence 237666544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=93.49 E-value=0.49 Score=48.94 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHH----HHhc----CCCEEEecCCCHHHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE----SRKL----GFPILYGDASRPAVL 470 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~----~~~~----~~~vi~GD~~~~~~L 470 (663)
....+|.|+|.|.+|..++..|. ..+. +++++|.++++++- +.+. ...-+.+. +|.+
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~----------~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~-~d~~-- 83 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISIL----------MKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS-KDYS-- 83 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC-SSGG--
T ss_pred CCCCEEEEECCCHHHHHHHHHHH----------hCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc-CCHH--
Confidence 35578999999999999999886 4454 89999999987654 3321 12223321 2332
Q ss_pred HhcCCCCCcEEEEEcC---------CH--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCC--CeEEc
Q 006034 471 LSAGITSPKAVMIMYT---------DK--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGA--TDAIL 530 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~---------dd--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Ga--d~vi~ 530 (663)
.+++||.+|++.+ +| +.|.. ++..+++.+|+.. +..+.||.+. ..+ +..|. .+|+-
T Consensus 84 ---~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~-vlvvtNPvdi~t~~~~k~sg~p~~rviG 159 (331)
T 4aj2_A 84 ---VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK-LLIVSNPVDILTYVAWKISGFPKNRVIG 159 (331)
T ss_dssp ---GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCE-EEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred ---HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeE-EEEecChHHHHHHHHHHHhCCCHHHEEe
Confidence 3789998877653 23 45654 3455667788854 4555566443 223 33455 34665
Q ss_pred C-chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 531 E-NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 531 p-~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
- ..+-..+.-..+-+.+++++..++
T Consensus 160 ~gt~LD~~R~~~~la~~lgv~~~~V~ 185 (331)
T 4aj2_A 160 SGCNLDSARFRYLMGERLGVHPLSCH 185 (331)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCB
T ss_pred eccccHHHHHHHHHHHHhCCCHHHCE
Confidence 5 444455666666666777775544
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.23 Score=51.30 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=72.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHH-HHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPA-VLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~-~L~~a~i~~a~~ 480 (663)
-+|.|+|+|++|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+.. .+|.+ .+++ .+.|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~---~~~D~ 66 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSG---------NADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAA---ADIDA 66 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHC---TTCCE
T ss_pred eEEEEECCCHHHHHHHHHHhh---------CCCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcC---CCCCE
Confidence 479999999999999999972 4677777 68999999888765 4544 24444 4442 46899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p~ 532 (663)
|+++++++.. ...+..+-+.+ .++++. +.+.+..+ ..++.|.-..+...
T Consensus 67 V~i~tp~~~h-~~~~~~al~~g--k~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~ 122 (331)
T 4hkt_A 67 VVICTPTDTH-ADLIERFARAG--KAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFN 122 (331)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred EEEeCCchhH-HHHHHHHHHcC--CcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEccc
Confidence 9999987643 44444555554 356652 34444443 34666776665543
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.081 Score=52.88 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=54.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhcC---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSAG--- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a~--- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+. +..++.+|.+|++.++++-
T Consensus 17 k~vlITGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 86 (278)
T 2bgk_A 17 KVAIITGGAGGIGETTAKLFV----------RYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTT 86 (278)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 46788875 789999999998 7899999999998876554431 4678899999998876541
Q ss_pred ---CCCCcEEEEEc
Q 006034 475 ---ITSPKAVMIMY 485 (663)
Q Consensus 475 ---i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 87 ~~~~~~id~li~~A 100 (278)
T 2bgk_A 87 IAKHGKLDIMFGNV 100 (278)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHcCCCCEEEECC
Confidence 13678776443
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.075 Score=52.36 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=54.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~-- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++.++++-
T Consensus 12 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHH
Confidence 46777776 789999999998 789999999999887654432 23567889999998876541
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 82 ~~~~~~~~d~vi~~A 96 (255)
T 1fmc_A 82 AISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHSSCCEEEECC
T ss_pred HHHhcCCCCEEEECC
Confidence 13678776654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.44 E-value=0.099 Score=53.37 Aligned_cols=35 Identities=31% Similarity=0.656 Sum_probs=31.7
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
.++|.|+| .|.+|..+++.|. +.|++|.++|++++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~----------~~G~~V~~~~~~~~ 56 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLR----------ASGYPISILDREDW 56 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHH----------TTTCCEEEECTTCG
T ss_pred CCEEEEEcCCCHHHHHHHHHHH----------hCCCeEEEEECCcc
Confidence 35799999 9999999999998 78999999999876
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.086 Score=55.94 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|.|+.|+.+++.++ +.|++|+++|.+++.- ........+.+|..|.+.+.+.. +++|.+
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~----------~~G~~vi~~d~~~~~~--~~~~ad~~~~~~~~d~~~l~~~~-~~~dvI 79 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAK----------EMGYKIAVLDPTKNSP--CAQVADIEIVASYDDLKAIQHLA-EISDVV 79 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSTTCT--TTTTCSEEEECCTTCHHHHHHHH-HTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCc--hHHhCCceEecCcCCHHHHHHHH-HhCCEe
Confidence 3458999999999999999998 7999999999887531 11122346678899988776654 457865
Q ss_pred EEEcCCHHHHHHHHHHHHHh---CCCCcEEEEecChhh-HHHHHHcCCCe
Q 006034 482 MIMYTDKKRTIEAVQRLRLA---FPAIPIYARAQDMMH-LLDLKKAGATD 527 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~---~~~~~iia~~~~~~~-~~~l~~~Gad~ 527 (663)
....++ .+...+..+.+. +|+...+..+.|... .+.++++|+..
T Consensus 80 ~~~~e~--~~~~~~~~l~~~g~~~~~~~~~~~~~dK~~~k~~l~~~Gip~ 127 (389)
T 3q2o_A 80 TYEFEN--IDYRCLQWLEKHAYLPQGSQLLSKTQNRFTEKNAIEKAGLPV 127 (389)
T ss_dssp EESCCC--CCHHHHHHHHHHSCCTTCSHHHHHTTSHHHHHHHHHHTTCCC
T ss_pred eecccc--ccHHHHHHHHhhCccCCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 333332 333334444433 445456666666654 44778888753
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.061 Score=54.21 Aligned_cols=113 Identities=14% Similarity=-0.029 Sum_probs=66.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CC--CEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GF--PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~--~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|+|.|..|+.++..|. +.|.+|++.++++++.+.+.+. +. .+...|. +.+. . .++|
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~----------~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~---~~~~--~-~~~D 182 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLL----------QAQQNIVLANRTFSKTKELAERFQPYGNIQAVSM---DSIP--L-QTYD 182 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEG---GGCC--C-SCCS
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHccccCCeEEeeH---HHhc--c-CCCC
Confidence 457999999999999999997 6779999999999998877642 11 2222222 1111 1 4899
Q ss_pred EEEEEcCCHHH-HHHHHHHHHHhCCCCcEEEEecChhh----HHHHHHcCCCeEEcCc
Q 006034 480 AVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMH----LLDLKKAGATDAILEN 532 (663)
Q Consensus 480 ~vv~~~~dd~~-n~~~~~~~r~~~~~~~iia~~~~~~~----~~~l~~~Gad~vi~p~ 532 (663)
.+|.+++.... +..-. -...+.++..++=...++.. .+..++.|+..+++--
T Consensus 183 ivIn~t~~~~~~~~~~i-~~~~l~~~~~v~D~~y~p~~~t~ll~~a~~~G~~~~v~G~ 239 (272)
T 1p77_A 183 LVINATSAGLSGGTASV-DAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGF 239 (272)
T ss_dssp EEEECCCC-------CC-CHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEECSH
T ss_pred EEEECCCCCCCCCCCCC-CHHHcCCCCEEEEeeCCCCcCCHHHHHHHHcCCCEeeCCH
Confidence 99988887532 11000 00011123234444444433 4455677886566643
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.2 Score=52.06 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=69.2
Q ss_pred CCcEEEEcCCcchHHHHHHhc-ccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLS-APLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~-~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+-+|.|+|+|++|+..++.|. + ..+.+++ +.|.|+++.+.+.+ .+....+.| -++.+++ .++|
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~---------~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~--~~~~l~~---~~~D 73 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNK---------IQGVKLVAACALDSNQLEWAKNELGVETTYTN--YKDMIDT---ENID 73 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHT---------CSSEEEEEEECSCHHHHHHHHHTTCCSEEESC--HHHHHTT---SCCS
T ss_pred cceEEEEcCCHHHHHHHHHHHhc---------CCCcEEEEEecCCHHHHHHHHHHhCCCcccCC--HHHHhcC---CCCC
Confidence 347999999999999999885 2 4566754 67999999887765 455434433 2334432 4789
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHc-CCCeEEcC
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKA-GATDAILE 531 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~-Gad~vi~p 531 (663)
+|+++++++.. ...+..+-+.+ .++++. +.+.+..+.+ ++. |....+..
T Consensus 74 ~V~i~tp~~~h-~~~~~~al~~G--~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~ 130 (346)
T 3cea_A 74 AIFIVAPTPFH-PEMTIYAMNAG--LNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGF 130 (346)
T ss_dssp EEEECSCGGGH-HHHHHHHHHTT--CEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCC
T ss_pred EEEEeCChHhH-HHHHHHHHHCC--CEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEec
Confidence 99999987643 33344443443 356652 2344443333 455 76655443
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.6 Score=48.24 Aligned_cols=137 Identities=13% Similarity=0.134 Sum_probs=82.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH-Hh--cC----CC-EEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RK--LG----FP-ILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~-~~--~~----~~-vi~GD~~~~~~L~~a 473 (663)
.+.+|.|+|.|.+|..++-.|.. .....+++++|.|+++.+.. .+ +. .+ -+.+| +.+
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~--------~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~--~~~----- 72 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVL--------QGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA--EYS----- 72 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC--CGG-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHc--------CCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEEC--CHH-----
Confidence 44689999999999999998861 11223799999999886542 22 11 11 23332 222
Q ss_pred CCCCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCCC--eEEcC-c
Q 006034 474 GITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGAT--DAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Gad--~vi~p-~ 532 (663)
.+++||.||++.+-. ..|.. ++..+++.+|+..++. +.||.+. ..+ +..|.+ +|+-- .
T Consensus 73 a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~s~~p~~rviG~gt 151 (326)
T 2zqz_A 73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV-AANPVDILTYATWKLSGFPKNRVVGSGT 151 (326)
T ss_dssp GGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECTT
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-eCCcHHHHHHHHHHHcCCCHHHEEEccc
Confidence 267899888776431 13443 3445566789977666 5776543 233 333443 67655 4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~ 554 (663)
..-..++-..+-+.+++++..+
T Consensus 152 ~LD~~R~~~~la~~lgv~~~~v 173 (326)
T 2zqz_A 152 SLDTARFRQSIAEMVNVDARSV 173 (326)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGE
T ss_pred cchHHHHHHHHHHHhCCChhhe
Confidence 4444566666666667766443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.12 Score=55.66 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE-----------e--c-CCCHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-----------G--D-ASRPA 468 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~-----------G--D-~~~~~ 468 (663)
..+|.|+|.|.+|..+|..|. + |++|+++|.|+++++.+.+...+... + . .+|.+
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La----------~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ 104 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIA----------Q-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKH 104 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------T-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred CCEEEEECcCHHHHHHHHHHH----------c-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHH
Confidence 347999999999999999997 6 99999999999999988763222110 0 0 12211
Q ss_pred HHHhcCCCCCcEEEEEcCCH
Q 006034 469 VLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd 488 (663)
..+++||.++++++++
T Consensus 105 ----ea~~~aDvViiaVPt~ 120 (432)
T 3pid_A 105 ----DAYRNADYVIIATPTD 120 (432)
T ss_dssp ----HHHTTCSEEEECCCCE
T ss_pred ----HHHhCCCEEEEeCCCc
Confidence 1246789999998875
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.089 Score=52.30 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------c-CCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------L-GFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~-~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++=
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELA----------RNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLF 77 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHH
Confidence 46788876 789999999998 789999999999987665432 1 4667889999998776531
Q ss_pred ------CCCCcEEEEEcC
Q 006034 475 ------ITSPKAVMIMYT 486 (663)
Q Consensus 475 ------i~~a~~vv~~~~ 486 (663)
.. .|.+|-..+
T Consensus 78 ~~~~~~~g-id~lv~~Ag 94 (260)
T 2z1n_A 78 EKARDLGG-ADILVYSTG 94 (260)
T ss_dssp HHHHHTTC-CSEEEECCC
T ss_pred HHHHHhcC-CCEEEECCC
Confidence 12 677766543
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.13 Score=53.25 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=63.7
Q ss_pred CCcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEEEEeCCh--HHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vvvid~d~--~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.+|+.++|.|..|.. +|+.|. ++|++|.+.|.++ +..+.+++.|..+..|. +++-+.+ .++|
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~----------~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~--~~~~l~~---~~~d 68 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAK----------EAGFEVSGCDAKMYPPMSTQLEALGIDVYEGF--DAAQLDE---FKAD 68 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHH----------HTTCEEEEEESSCCTTHHHHHHHTTCEEEESC--CGGGGGS---CCCS
T ss_pred CcEEEEEEECHHHHHHHHHHHH----------hCCCEEEEEcCCCCcHHHHHHHhCCCEEECCC--CHHHcCC---CCCC
Confidence 468999999999996 899887 8999999999865 35667888899988873 4443321 3688
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.||....=+.+|-. ...||+.+ ++++.+
T Consensus 69 ~vV~Spgi~~~~p~-~~~a~~~g--i~v~~~ 96 (326)
T 3eag_A 69 VYVIGNVAKRGMDV-VEAILNLG--LPYISG 96 (326)
T ss_dssp EEEECTTCCTTCHH-HHHHHHTT--CCEEEH
T ss_pred EEEECCCcCCCCHH-HHHHHHcC--CcEEeH
Confidence 77765543334443 44567765 456655
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.15 Score=53.20 Aligned_cols=110 Identities=15% Similarity=-0.012 Sum_probs=72.6
Q ss_pred CcEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
-+|.|+|+|.+|+ ..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+.+.+ .| -++.+++ .+.|+
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~g~~~~-~~--~~~ll~~---~~~D~ 92 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEA---------EPLTEVTAIASRRWDRAKRFTERFGGEPV-EG--YPALLER---DDVDA 92 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHH---------CTTEEEEEEEESSHHHHHHHHHHHCSEEE-ES--HHHHHTC---TTCSE
T ss_pred eEEEEEcCcHHHHHHHHHHHHh---------CCCeEEEEEEcCCHHHHHHHHHHcCCCCc-CC--HHHHhcC---CCCCE
Confidence 4799999999998 78888872 4577776 66999999888765 466654 22 2344433 57899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILE 531 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p 531 (663)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+ ..++.|.-..+..
T Consensus 93 V~i~tp~~~h-~~~~~~al~aG--k~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~ 147 (350)
T 3rc1_A 93 VYVPLPAVLH-AEWIDRALRAG--KHVLAEKPLTTDRPQAERLFAVARERGLLLMENF 147 (350)
T ss_dssp EEECCCGGGH-HHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEECCCcHHH-HHHHHHHHHCC--CcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence 9999988643 44455555554 357763 44544443 3456677665543
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.1 Score=53.90 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh----------HHHHHHHh---cCCCEEEecCCCHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----------SVVKESRK---LGFPILYGDASRPAV 469 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~----------~~~~~~~~---~~~~vi~GD~~~~~~ 469 (663)
++++|.|. |-+|+.+++.|. +.|++|+++++++ +..+.+.+ .+..++.+|.+|++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~ 72 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELL----------EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGA 72 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHH
Confidence 57899985 999999999997 6799999998743 33444432 467889999999988
Q ss_pred HHhcCCC--CCcEEEEEcC
Q 006034 470 LLSAGIT--SPKAVMIMYT 486 (663)
Q Consensus 470 L~~a~i~--~a~~vv~~~~ 486 (663)
++++ ++ +.|.||-+..
T Consensus 73 ~~~~-~~~~~~d~vih~A~ 90 (348)
T 1ek6_A 73 LQRL-FKKYSFMAVIHFAG 90 (348)
T ss_dssp HHHH-HHHCCEEEEEECCS
T ss_pred HHHH-HHhcCCCEEEECCC
Confidence 7654 22 6788876654
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.066 Score=52.79 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=55.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhc--CCCCCc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSA--GITSPK 479 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a--~i~~a~ 479 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+. +..++.+|.+|++.++++ ...+.|
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id 76 (246)
T 2ag5_A 7 KVIILTAAAQGIGQAAALAFA----------REGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLD 76 (246)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 45777776 789999999998 7899999999999877655432 467789999999887654 245778
Q ss_pred EEEEEc
Q 006034 480 AVMIMY 485 (663)
Q Consensus 480 ~vv~~~ 485 (663)
.+|-..
T Consensus 77 ~lv~~A 82 (246)
T 2ag5_A 77 VLFNVA 82 (246)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.81 Score=47.22 Aligned_cols=137 Identities=14% Similarity=0.041 Sum_probs=83.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHH----Hhc----CCCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKES----RKL----GFPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~----~~~----~~~vi~GD~~~~~~L~ 471 (663)
..++|.|+|.|.+|..++..|. ..+. +++++|.++++++.. .+. ...-+.+. +| ++
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la----------~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t-~d---~~ 85 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVL----------MKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG-KD---YS 85 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHH----------HHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEE-SS---SC
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEc-CC---HH
Confidence 4578999999999999999886 4454 899999999875442 221 12223321 22 21
Q ss_pred hcCCCCCcEEEEEcC---------CH--HHHHHHH----HHHHHhCCCCcEEEEecChhhHH--H-HHHcCC--CeEEcC
Q 006034 472 SAGITSPKAVMIMYT---------DK--KRTIEAV----QRLRLAFPAIPIYARAQDMMHLL--D-LKKAGA--TDAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~---------dd--~~n~~~~----~~~r~~~~~~~iia~~~~~~~~~--~-l~~~Ga--d~vi~p 531 (663)
.+++||.||++.+ +| ..|..+. ..+++.+|+.. +..+.||.+.- . .+..|. ++|+--
T Consensus 86 --~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~-ilvvtNPvdi~t~~~~k~sg~p~~rViG~ 162 (330)
T 3ldh_A 86 --VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCL-KELHPELGTDKNKQDWKLSGLPMHRIIGS 162 (330)
T ss_dssp --SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCE-EEECSSSHHHHHHHHHHHHCCCGGGEECC
T ss_pred --HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCce-EEeCCCccHHHHHHHHHHhCCCHHHeecc
Confidence 3789998887642 23 5665543 45666788854 45555664432 2 233453 345544
Q ss_pred -chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 -NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 -~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
..+-..++...+-+.+++++..++
T Consensus 163 gt~LDs~R~~~~lA~~lgv~~~~V~ 187 (330)
T 3ldh_A 163 GCNLDSARFRYLMGERLGVHSCLVI 187 (330)
T ss_dssp TTHHHHHHHHHHHHHHHTSCTTTCC
T ss_pred cCchhHHHHHHHHHHHhCCCHHHeE
Confidence 333445566666666677764443
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.047 Score=57.22 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++-|+|+|++|+.+|+.|. ..|.+|++.|+++...+...+.+.... .+.+-+ ++++|.|+
T Consensus 164 gktvGIIG~G~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~el----l~~aDvV~ 225 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLK----------PFGCNLLYHDRLQMAPELEKETGAKFV----EDLNEM----LPKCDVIV 225 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHG----------GGCCEEEEECSSCCCHHHHHHHCCEEC----SCHHHH----GGGCSEEE
T ss_pred CCEEeEEEeCHHHHHHHHHHH----------HCCCEEEEeCCCccCHHHHHhCCCeEc----CCHHHH----HhcCCEEE
Confidence 457999999999999999997 789999999998766665555554321 222222 35689888
Q ss_pred EEcCCHH--HHHHHHHHHHHhCCC
Q 006034 483 IMYTDKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~--~n~~~~~~~r~~~~~ 504 (663)
+.++..+ .++.-....+.+.|+
T Consensus 226 l~~Plt~~t~~li~~~~l~~mk~g 249 (351)
T 3jtm_A 226 INMPLTEKTRGMFNKELIGKLKKG 249 (351)
T ss_dssp ECSCCCTTTTTCBSHHHHHHSCTT
T ss_pred ECCCCCHHHHHhhcHHHHhcCCCC
Confidence 8887542 233334556666666
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.08 Score=54.58 Aligned_cols=73 Identities=16% Similarity=0.051 Sum_probs=54.9
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH----HHH---hcCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESR---KLGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~----~~~---~~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|.|. |-+|+.+++.|. +.|++|++++++++..+ .+. ..+..++.+|.+|++.++++=
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELL----------AHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIF 74 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHH
T ss_pred CcEEEEecCCcHHHHHHHHHHH----------HCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHH
Confidence 457999985 999999999998 78999999998765432 222 246788999999999887641
Q ss_pred C-CCCcEEEEEc
Q 006034 475 I-TSPKAVMIMY 485 (663)
Q Consensus 475 i-~~a~~vv~~~ 485 (663)
- .+.|.+|-+.
T Consensus 75 ~~~~~d~vih~A 86 (341)
T 3enk_A 75 DAHPITAAIHFA 86 (341)
T ss_dssp HHSCCCEEEECC
T ss_pred hccCCcEEEECc
Confidence 1 2678777554
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.099 Score=51.68 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h--cCCCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K--LGFPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~--~~~~vi~GD~~~~~~L~~a~-- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+... + ....++.+|.+|++.++++=
T Consensus 14 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 83 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALA----------EAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRS 83 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 56788876 789999999998 78999999999988755433 2 23667899999998776531
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 84 ~~~~~~~id~vi~~A 98 (260)
T 3awd_A 84 VHEQEGRVDILVACA 98 (260)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 13578776554
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.13 Score=51.06 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=54.0
Q ss_pred CCCCcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH---HHHHh--cCCCEEEecCCCHHHHHh
Q 006034 401 EGSEPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRK--LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 401 ~~~~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~---~~~~~--~~~~vi~GD~~~~~~L~~ 472 (663)
...++++|.|. +-+|+.+++.|. ++|++|++++++++.. +.+.+ ....++.+|.+|++-.++
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 81 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACK----------REGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDA 81 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHH----------HcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 35567888886 489999999998 7899999998885443 33322 247889999999987654
Q ss_pred c------CCCCCcEEEEE
Q 006034 473 A------GITSPKAVMIM 484 (663)
Q Consensus 473 a------~i~~a~~vv~~ 484 (663)
+ ...+.|.+|-.
T Consensus 82 ~~~~~~~~~g~id~lv~n 99 (271)
T 3ek2_A 82 LFASLKTHWDSLDGLVHS 99 (271)
T ss_dssp HHHHHHHHCSCEEEEEEC
T ss_pred HHHHHHHHcCCCCEEEEC
Confidence 3 12356777654
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.031 Score=60.17 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH-HHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~-~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+++.|+|.|+.|+.+++.++ +.|++|+++|.+++.- .... ...+.+|.+|.+.+.+.- +++|.
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~----------~lG~~v~v~d~~~~~p~~~~a---d~~~~~~~~d~~~l~~~a-~~~D~ 99 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQ----------SMGYRVAVLDPDPASPAGAVA---DRHLRAAYDDEAALAELA-GLCEA 99 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCTTCHHHHHS---SEEECCCTTCHHHHHHHH-HHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEECCCCcCchhhhC---CEEEECCcCCHHHHHHHH-hcCCE
Confidence 4568999999999999999997 7999999999887642 2222 346678999999887765 78897
Q ss_pred EEEEcCCHHHHHHHHHHHHHh---CCCCcEEEEecChh-hHHHHHHcCCCe
Q 006034 481 VMIMYTDKKRTIEAVQRLRLA---FPAIPIYARAQDMM-HLLDLKKAGATD 527 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~---~~~~~iia~~~~~~-~~~~l~~~Gad~ 527 (663)
++...++ .+...+..+.+. +|+...+..+.|.. ..+.+++.|+..
T Consensus 100 V~~~~e~--~~~~~~~~l~~~~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~ 148 (419)
T 4e4t_A 100 VSTEFEN--VPAASLDFLARTTFVAPAGRCVAVAQDRIAEKRFIEASGVPV 148 (419)
T ss_dssp EEECCTT--CCHHHHHHHHTTSEESSCHHHHHHHTCHHHHHHHHHHTTCCB
T ss_pred EEEccCc--CCHHHHHHHHccCCcCCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 7643332 333333333332 34444555555554 444677888763
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.12 Score=53.25 Aligned_cols=119 Identities=8% Similarity=0.002 Sum_probs=73.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC---hHHHHHHHh-----cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN---PSVVKESRK-----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d---~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|+|.|..|+.++..|. +.|. +|++++++ +++++.+.+ .+..+-..+..+.+-|.+
T Consensus 154 gk~~lVlGaGG~g~aia~~L~----------~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~- 222 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAA----------LDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK- 222 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-
T ss_pred CCEEEEECCChHHHHHHHHHH----------HCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh-
Confidence 468999999999999999998 6787 89999999 888777653 233444556666555543
Q ss_pred CCCCCcEEEEEcCCHHH-H--HHHHHHHHHhCCCCcEEEEecChhhHH---HHHHcCCCeEEcCch
Q 006034 474 GITSPKAVMIMYTDKKR-T--IEAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGATDAILENA 533 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~-n--~~~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Gad~vi~p~~ 533 (663)
.+.++|.||-+|+-... + ..-......+.++.-++=.+.++...+ ..++.|+ .+++--.
T Consensus 223 ~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~G~-~~~~Gl~ 287 (315)
T 3tnl_A 223 EIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGC-QTLNGLG 287 (315)
T ss_dssp HHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSCHHHHHHHHTTC-EEECSHH
T ss_pred hhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCCHHHHHHHHCCC-eEeCcHH
Confidence 25678988888763100 0 000000112233323444566665444 4466787 5666553
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.12 Score=52.23 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=57.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc--CCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA--GIT 476 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a--~i~ 476 (663)
.+.++|.|. |-+|+.+++.|. ++|++|+++++|+++.+...+. ...++.+|.+|++.++++ .+.
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELA----------RRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 346777776 679999999998 7899999999999998877653 467889999999987664 345
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.+|-..
T Consensus 86 ~iD~lv~nA 94 (291)
T 3rd5_A 86 GADVLINNA 94 (291)
T ss_dssp CEEEEEECC
T ss_pred CCCEEEECC
Confidence 678776544
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.082 Score=51.98 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=54.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a---- 473 (663)
++++|.|. |.+|+.+++.|. +.|++|++++++++..+...+ ....++.+|.+|++.++++
T Consensus 7 k~vlVtGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (251)
T 1zk4_A 7 KVAIITGGTLGIGLAIATKFV----------EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHH
Confidence 45777775 789999999998 789999999999987765543 3467889999999877643
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~~id~li~~A 90 (251)
T 1zk4_A 77 EKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHSSCCEEEECC
T ss_pred HHHhCCCCEEEECC
Confidence 123578776654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.047 Score=57.87 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..++++|+|+|++|+.+++.+. ..|.+|++.|+++++.+.+.+ .+..+.. +..+.+.+.+. +.++|.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~----------~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~-~~~~~~~l~~~-l~~aDv 234 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIAN----------GMGATVTVLDINIDKLRQLDAEFCGRIHT-RYSSAYELEGA-VKRADL 234 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTTTSSEE-EECCHHHHHHH-HHHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHhcCCeeEe-ccCCHHHHHHH-HcCCCE
Confidence 3468999999999999999997 788999999999999887766 4544221 22333334332 347898
Q ss_pred EEEEcCCHHH---HHHHHHHHHHhCCCCcEEE
Q 006034 481 VMIMYTDKKR---TIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 481 vv~~~~dd~~---n~~~~~~~r~~~~~~~iia 509 (663)
++.++..+.. ++......+.+.|...++-
T Consensus 235 Vi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~ 266 (377)
T 2vhw_A 235 VIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVD 266 (377)
T ss_dssp EEECCCCTTSCCCCCBCHHHHTTSCTTCEEEE
T ss_pred EEECCCcCCCCCcceecHHHHhcCCCCcEEEE
Confidence 8887654321 1112233455555534443
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.1 Score=52.33 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=55.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ ....++.+|.+|++.++++
T Consensus 31 ~k~vlITGasggIG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 100 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFA----------KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAK 100 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHH
Confidence 356888875 789999999998 789999999999987665432 2456788999999876543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 101 ~~~~~~g~iD~li~~A 116 (272)
T 1yb1_A 101 KVKAEIGDVSILVNNA 116 (272)
T ss_dssp HHHHHTCCCSEEEECC
T ss_pred HHHHHCCCCcEEEECC
Confidence 124678777654
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.84 Score=39.61 Aligned_cols=97 Identities=15% Similarity=0.007 Sum_probs=66.0
Q ss_pred CCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-H--HHHHHHHHHHHHhCCCCcE
Q 006034 435 VGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-K--KRTIEAVQRLRLAFPAIPI 507 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d--~~n~~~~~~~r~~~~~~~i 507 (663)
...++.++|.|+...+.+.+ .|+.+..-+ +-.+.++...-.+.|.+++-.+- + ..-...+..+|+.+|++++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFA-SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEES-SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC-CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 34678899999887655443 567666432 33456666666678877776553 2 3556788889999999898
Q ss_pred EEEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 508 YARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 508 ia~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
+...... +......+.|++.++...
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP 110 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKP 110 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCC
Confidence 8776644 446677889999877654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.18 Score=52.00 Aligned_cols=134 Identities=17% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHH-HHh--cCC----CE-EEecCCCHHHHHh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE-SRK--LGF----PI-LYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~-~~~--~~~----~v-i~GD~~~~~~L~~ 472 (663)
+.+|.|+|.|.+|..++-.|. ..+. +++++|.|+++++. ..+ +.. ++ +.. ++.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~----------~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~~----- 69 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMA----------LRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GDY----- 69 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHH----------HTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CG-----
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CCH-----
Confidence 357999999999999999987 4455 89999999987432 222 111 11 221 222
Q ss_pred cCCCCCcEEEEEcCCH-----------HHHH----HHHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCCC--eEEcC-
Q 006034 473 AGITSPKAVMIMYTDK-----------KRTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGAT--DAILE- 531 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd-----------~~n~----~~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Gad--~vi~p- 531 (663)
..+++||.||++.+-. ..|. .++..+++.+|+..++. ..||-+. ..+ +..|.+ +|+--
T Consensus 70 ~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPv~~~~~~~~k~s~~p~~rviG~g 148 (318)
T 1y6j_A 70 SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV-VSNPVDIITYMIQKWSGLPVGKVIGSG 148 (318)
T ss_dssp GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEE-CSSSHHHHHHHHHHHHTCCTTTEEECT
T ss_pred HHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCcHHHHHHHHHHHcCCCHHHEeccC
Confidence 2378999888876532 2343 35556667788876666 5666433 223 333443 67755
Q ss_pred chHHHHHHHHHHHHhcCCCHHHH
Q 006034 532 NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 532 ~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
...-..++.+.+-+.+++++..+
T Consensus 149 t~Ld~~r~~~~la~~lgv~~~~v 171 (318)
T 1y6j_A 149 TVLDSIRFRYLLSEKLGVDVKNV 171 (318)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTE
T ss_pred CchHHHHHHHHHHHHhCCCHHHe
Confidence 54445566666667777776443
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.088 Score=51.62 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=55.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ .+..++.+|.+|++-.+++
T Consensus 4 k~vlVTGas~GIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 73 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLV----------ERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVE 73 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 46888886 679999999998 789999999999998776654 2577889999998866542
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 74 ~~g~id~lvnnA 85 (235)
T 3l6e_A 74 WGGLPELVLHCA 85 (235)
T ss_dssp HHCSCSEEEEEC
T ss_pred hcCCCcEEEECC
Confidence 113567666554
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.095 Score=51.61 Aligned_cols=72 Identities=8% Similarity=0.193 Sum_probs=54.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCC-CEEEecCCCHHHHHhcC----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGF-PILYGDASRPAVLLSAG---- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~-~vi~GD~~~~~~L~~a~---- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ ... .++.+|.+|++.++++-
T Consensus 12 k~vlITGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFA----------ASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAE 81 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHH
Confidence 46788875 889999999998 789999999999988766543 233 67899999998876541
Q ss_pred -CCCCcEEEEEc
Q 006034 475 -ITSPKAVMIMY 485 (663)
Q Consensus 475 -i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 82 ~~~~id~li~~A 93 (254)
T 2wsb_A 82 AVAPVSILVNSA 93 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred hhCCCcEEEECC
Confidence 24667776654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.11 Score=51.60 Aligned_cols=72 Identities=14% Similarity=0.004 Sum_probs=55.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+. ...++.+|.+|++.++++
T Consensus 6 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAV----------AAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 46888886 789999999998 7899999999999887766542 356788999999877643
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~g~iD~lv~nA 87 (254)
T 1hdc_A 76 EFGSVDGLVNNA 87 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 112567776543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.15 Score=52.67 Aligned_cols=111 Identities=10% Similarity=-0.013 Sum_probs=72.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCH-HHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRP-AVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~-~~L~~a~i~~a~~ 480 (663)
-++.|+|+|++|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+..-.+ +|. +.+.+ .+.|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~~~~~~~~~~~---~~~~~ll~~---~~~D~ 70 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRE---------SAQAEVRGIASRRLENAQKMAKELAIPVAY---GSYEELCKD---ETIDI 70 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHH---------SSSEEEEEEBCSSSHHHHHHHHHTTCCCCB---SSHHHHHHC---TTCSE
T ss_pred EEEEEECchHHHHHHHHHHHh---------CCCcEEEEEEeCCHHHHHHHHHHcCCCcee---CCHHHHhcC---CCCCE
Confidence 479999999999999999972 4677777 66999999888765 3443222 333 34442 47899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEE---EecChhhHH----HHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYA---RAQDMMHLL----DLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia---~~~~~~~~~----~l~~~Gad~vi~p~ 532 (663)
|+++++++.. ...+..+-+.+ .++++ .+.+.+..+ ..++.|.-..+...
T Consensus 71 V~i~tp~~~h-~~~~~~al~~g--k~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~ 126 (330)
T 3e9m_A 71 IYIPTYNQGH-YSAAKLALSQG--KPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQK 126 (330)
T ss_dssp EEECCCGGGH-HHHHHHHHHTT--CCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCS
T ss_pred EEEcCCCHHH-HHHHHHHHHCC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEh
Confidence 9999998643 44455555554 25665 234444433 34566776655443
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=93.01 E-value=0.83 Score=40.01 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=67.2
Q ss_pred CCCCEEEEeCChHHHHHHH----hcCCCEEEecC-CCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHH--hCCCCc
Q 006034 435 VGWPFVAFDLNPSVVKESR----KLGFPILYGDA-SRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRL--AFPAIP 506 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~-~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~--~~~~~~ 506 (663)
...++.++|.|+...+.+. +.++....... +-.+.++...-.+.|.+++-.+-. ......+..+|+ .+++++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 3467899999988755544 46666333333 334566666667889887766543 345667778888 678888
Q ss_pred EEEEecC--hhhHHHHHHcCCCeEEcCch
Q 006034 507 IYARAQD--MMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 507 iia~~~~--~~~~~~l~~~Gad~vi~p~~ 533 (663)
+++.... .+......+.|++.++....
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~ 112 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVVDKSS 112 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEEECCT
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCC
Confidence 8887754 56666778899998876653
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.1 Score=56.69 Aligned_cols=66 Identities=14% Similarity=0.287 Sum_probs=50.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+.++|+|+|.+|+.+++.|. ..|.+|++.|.|+++.+.+.+.+..+ .+.+ .-...+|.++
T Consensus 265 GKtVvVtGaGgIG~aiA~~La----------a~GA~Viv~D~~~~~a~~Aa~~g~dv-----~~le----e~~~~aDvVi 325 (488)
T 3ond_A 265 GKVAVVAGYGDVGKGCAAALK----------QAGARVIVTEIDPICALQATMEGLQV-----LTLE----DVVSEADIFV 325 (488)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEE-----CCGG----GTTTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHhCCcc-----CCHH----HHHHhcCEEE
Confidence 457999999999999999998 78999999999999988877766532 2222 2234688777
Q ss_pred EEcCC
Q 006034 483 IMYTD 487 (663)
Q Consensus 483 ~~~~d 487 (663)
.+++.
T Consensus 326 ~atG~ 330 (488)
T 3ond_A 326 TTTGN 330 (488)
T ss_dssp ECSSC
T ss_pred eCCCC
Confidence 66553
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.09 Score=52.88 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=55.5
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc--
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a-- 473 (663)
.++.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+. ...++.+|.+|++.++++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~La----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 89 (272)
T 2nwq_A 20 MSSTLFITGATSGFGEACARRFA----------EAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVD 89 (272)
T ss_dssp -CCEEEESSTTTSSHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred cCcEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 3366788875 789999999998 7899999999999887765532 466789999999877653
Q ss_pred CC----CCCcEEEEEc
Q 006034 474 GI----TSPKAVMIMY 485 (663)
Q Consensus 474 ~i----~~a~~vv~~~ 485 (663)
.+ .+.|.+|-..
T Consensus 90 ~~~~~~g~iD~lvnnA 105 (272)
T 2nwq_A 90 NLPEEFATLRGLINNA 105 (272)
T ss_dssp TCCGGGSSCCEEEECC
T ss_pred HHHHHhCCCCEEEECC
Confidence 22 3457776643
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.69 Score=47.48 Aligned_cols=134 Identities=14% Similarity=0.206 Sum_probs=80.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHH----HHHh----cCC-CEEEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRK----LGF-PILYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~----~~~~----~~~-~vi~GD~~~~~~L~~a 473 (663)
++.|+|.|.+|..++..|. ..+. +++++|.++++++ ++.+ .+. .-+.+. .+. .
T Consensus 2 kv~ViGaG~vG~~~a~~l~----------~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~-~~~-----~ 65 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVA----------RQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT-NDY-----G 65 (314)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE-SSS-----G
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC-CCH-----H
Confidence 5889999999999999886 3444 8999999998754 2222 111 224432 222 3
Q ss_pred CCCCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--H-HHHcCC--CeEEcCc-
Q 006034 474 GITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--D-LKKAGA--TDAILEN- 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~-l~~~Ga--d~vi~p~- 532 (663)
.+++||.+|++.+.. ..|.. ++..+++.+|+. ++..+.||.+.- . .+..|. ++|+--.
T Consensus 66 a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a-~vivvtNPvd~~t~~~~k~~g~p~~rviG~~t 144 (314)
T 3nep_X 66 PTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDS-TIIVVANPLDVMTYVAYEASGFPTNRVMGMAG 144 (314)
T ss_dssp GGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTC-EEEECCSSHHHHHHHHHHHHTCCGGGEEECCH
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCc-EEEecCCchhHHHHHHHHhcCCChHHEEeecC
Confidence 467899888876432 34554 334556667885 455556665432 2 233453 3555554
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
..-..++-..+-+.+++++..++
T Consensus 145 ~LD~~R~~~~la~~lgv~~~~v~ 167 (314)
T 3nep_X 145 VLDTGRFRSFIAEELDVSVRDVQ 167 (314)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEE
T ss_pred chHHHHHHHHHHHHhCcCHHHeE
Confidence 44345566666666777775443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.31 Score=49.57 Aligned_cols=95 Identities=19% Similarity=0.172 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a 473 (663)
+..++|+-+|+|..+..... +.+ ..+.+|+.||.|++.++.+++ .+..+++||+.+..
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~-lA~---------~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----- 185 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGIL-LSH---------VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----- 185 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHH-HHH---------TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-----
T ss_pred CCcCEEEEECCCccHHHHHH-HHH---------ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-----
Confidence 45679999999986544222 221 457899999999999887764 24678899997632
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
-+.+|.|++...-.+..-......|.+.|+-.++.+.
T Consensus 186 -d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 186 -GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp -GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred -CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 2678988765443223334556677788887777764
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.13 Score=51.03 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=55.3
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc-----
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a----- 473 (663)
.++++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+ .....+.+|.+|++..+++
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFA----------KGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAAL 78 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 356888887 568999999998 789999999999998877654 3467789999999876542
Q ss_pred -CCCCCcEEEEEc
Q 006034 474 -GITSPKAVMIMY 485 (663)
Q Consensus 474 -~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 79 ~~~g~id~li~~A 91 (261)
T 3n74_A 79 SKFGKVDILVNNA 91 (261)
T ss_dssp HHHSCCCEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 112567666543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.12 Score=51.54 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=54.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++-.+++
T Consensus 12 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCA----------EQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDE 81 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46778876 569999999998 789999999999988766543 2 456788999999876543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 82 ~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 82 TMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHTSCCSEEEECC
T ss_pred HHHHcCCCcEEEECC
Confidence 123678776544
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.67 Score=47.61 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH----HhcC-----CCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKLG-----FPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~----~~~~-----~~vi~GD~~~~~~L~~ 472 (663)
...+|.|+|.|.+|..++..|.. .....+++++|.|+++.+.. .+.. ..-++. .+.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~--------~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~~----- 69 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMN--------QGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GDY----- 69 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CCG-----
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--------CCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--CcH-----
Confidence 34589999999999999998862 11224799999999865432 2211 112222 122
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCCC--eEEcC-
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGAT--DAILE- 531 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Gad--~vi~p- 531 (663)
..+++||.||++.+- | ..|.. ++..+++..|+..++. +.||-+. ..+ +..|.+ +|+--
T Consensus 70 ~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv-~tNPv~~~~~~~~~~s~~p~~rviG~g 148 (316)
T 1ldn_A 70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLV-ATNPVDILTYATWKFSGLPHERVIGSG 148 (316)
T ss_dssp GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEE-CSSSHHHHHHHHHHHHTCCGGGEEECT
T ss_pred HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEE-eCCchHHHHHHHHHHhCCCHHHEEecc
Confidence 237899988888431 2 34433 4455666788866555 5666433 233 333443 66644
Q ss_pred chHHHHHHHHHHHHhcCCCHHHH
Q 006034 532 NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 532 ~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
...-..++-+.+-+.+++++..+
T Consensus 149 t~lD~~r~~~~la~~l~v~~~~v 171 (316)
T 1ldn_A 149 TILDTARFRFLLGEYFSVAPQNV 171 (316)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGE
T ss_pred cchHHHHHHHHHHHHhCCCHHHe
Confidence 44444555666666667666433
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.032 Score=53.40 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=53.7
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|.| .|.+|+.+++.|. ++|+ +|++++++++. ...+..++.+|.+|++.++++- .|
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~----------~~g~~~~V~~~~r~~~~----~~~~~~~~~~D~~~~~~~~~~~---~d 67 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRIL----------SEPTLAKVIAPARKALA----EHPRLDNPVGPLAELLPQLDGS---ID 67 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH----------HCTTCCEEECCBSSCCC----CCTTEECCBSCHHHHGGGCCSC---CS
T ss_pred CceEEEECCCcHHHHHHHHHHH----------hCCCCCeEEEEeCCCcc----cCCCceEEeccccCHHHHHHhh---hc
Confidence 35799998 5999999999997 6777 99999998875 2345667889999998887765 89
Q ss_pred EEEEEcC
Q 006034 480 AVMIMYT 486 (663)
Q Consensus 480 ~vv~~~~ 486 (663)
.+|-+..
T Consensus 68 ~vi~~a~ 74 (215)
T 2a35_A 68 TAFCCLG 74 (215)
T ss_dssp EEEECCC
T ss_pred EEEECee
Confidence 8887664
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.18 Score=50.49 Aligned_cols=72 Identities=18% Similarity=0.064 Sum_probs=53.8
Q ss_pred CcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---HHHHHHh--cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRK--LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---~~~~~~~--~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++ ..+.+.+ ....++.+|.+|++.++++
T Consensus 7 k~vlVTGas~~~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 76 (275)
T 2pd4_A 7 KKGLIVGVANNKSIAYGIAQSCF----------NQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYN 76 (275)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHH----------TTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHH
Confidence 56899997 599999999998 78999999999886 4444443 2367899999999876543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~~g~id~lv~nA 92 (275)
T 2pd4_A 77 SVKKDLGSLDFIVHSV 92 (275)
T ss_dssp HHHHHTSCEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 123567666543
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.26 Score=42.64 Aligned_cols=96 Identities=17% Similarity=0.073 Sum_probs=63.1
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
.++.++|.|+...+.++ +.|+.++.--.+-.+.++...-.+.|.+++-.+-. ......+..+|+.+|+.+++...
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 36889999988755544 46666652222223444444445789887776532 34567888899999998888776
Q ss_pred cChh--hHHHHHHcCCCeEEcCc
Q 006034 512 QDMM--HLLDLKKAGATDAILEN 532 (663)
Q Consensus 512 ~~~~--~~~~l~~~Gad~vi~p~ 532 (663)
.+.+ ......+.|++.++...
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp 104 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKK 104 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGG
T ss_pred CCCChHHHHHHHHhCCCEEEeCC
Confidence 6544 67778899999876654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.12 Score=51.21 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++|+|+++.+...+ .....+.+|.+|++-.+++
T Consensus 9 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 78 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYV----------REGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVE 78 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 46788886 779999999998 789999999999998776654 2456789999999876543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 79 ~~g~id~lv~~A 90 (259)
T 4e6p_A 79 HAGGLDILVNNA 90 (259)
T ss_dssp HSSSCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 123677776654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.17 Score=51.05 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCCcE-EEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc---
Q 006034 402 GSEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 402 ~~~~v-iI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a--- 473 (663)
.++++ +|.|. +-+|+.+++.|. ++|.+|++.|+|+++.+...+ .....+.+|.+|++-.+++
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la----------~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFV----------AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHH
Confidence 44554 55565 459999999998 899999999999998877654 2466788999999877642
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 97 ~~~~~G~iDiLVNN 110 (273)
T 4fgs_A 97 VKAEAGRIDVLFVN 110 (273)
T ss_dssp HHHHHSCEEEEEEC
T ss_pred HHHHcCCCCEEEEC
Confidence 22356766543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.042 Score=56.72 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=52.4
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH---HHHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~---~~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.| .|-+|+.+++.|. ++|++|+++.++++..+ .+.+ .+..++.||.+|++.++++
T Consensus 6 ~~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 74 (337)
T 2c29_D 6 ETVCVTGASGFIGSWLVMRLL----------ERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEA- 74 (337)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHH-
T ss_pred CEEEEECCchHHHHHHHHHHH----------HCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHH-
Confidence 4688988 6999999999997 78999999888876332 2211 2356889999998877665
Q ss_pred CCCCcEEEEE
Q 006034 475 ITSPKAVMIM 484 (663)
Q Consensus 475 i~~a~~vv~~ 484 (663)
++++|.|+-+
T Consensus 75 ~~~~d~Vih~ 84 (337)
T 2c29_D 75 IKGCTGVFHV 84 (337)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEEEe
Confidence 3567877643
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.24 Score=44.65 Aligned_cols=56 Identities=14% Similarity=-0.006 Sum_probs=39.6
Q ss_pred CCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEEecC--hhhHHHHHHcCCCeEEcCc
Q 006034 477 SPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARAQD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 477 ~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~~~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
+.|.+++-.+- +..-...+..+|+.+|++++++...+ .+......++|++.++.-.
T Consensus 83 ~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP 141 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKP 141 (157)
T ss_dssp GCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESS
T ss_pred CCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCC
Confidence 45766655442 23446678888999999998887765 5667778899999876554
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.15 Score=55.32 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=61.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh----HHHHHHHhcCCCEEEecCCCHHHHHhcCCCC-
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----SVVKESRKLGFPILYGDASRPAVLLSAGITS- 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~----~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~- 477 (663)
.+|+.|+|.|..|..+|+.|. +.|++|.+.|.++ +..+.+++.|..+..|.-.+ +.+ ++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~----------~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~-~~~-----~~~ 72 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLA----------KLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPL-ELL-----DED 72 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHH----------HTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCG-GGG-----GSC
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChH-Hhh-----cCC
Confidence 468999999999999999997 8999999999864 34567788899998886532 222 34
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+|.||+...=+..|-. ...+|+.+
T Consensus 73 ~d~vv~spgi~~~~p~-~~~a~~~g 96 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPM-VKKALEKQ 96 (451)
T ss_dssp EEEEEECTTSCTTSHH-HHHHHHTT
T ss_pred CCEEEECCcCCCCChh-HHHHHHCC
Confidence 8988776655444544 44566654
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=92.86 E-value=0.5 Score=41.91 Aligned_cols=97 Identities=8% Similarity=-0.040 Sum_probs=63.0
Q ss_pred CCCEEEEeCChHHHHHHHh----cCC-CEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEE
Q 006034 436 GWPFVAFDLNPSVVKESRK----LGF-PILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 436 ~~~vvvid~d~~~~~~~~~----~~~-~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia 509 (663)
..++.++|.|+...+.+++ .+. ..+.--.+-.+.++...-.+.|.+++-.+- +..-...+..+|+.+|+++++.
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 99 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVV 99 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4567888888776555443 231 222222233456666666778877776553 2345677888899899989888
Q ss_pred EecCh--hhHHHHHHcCCCeEEcCc
Q 006034 510 RAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 510 ~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
...+. +......+.|++.++...
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp 124 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKE 124 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETT
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecC
Confidence 77654 466778899999876654
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.095 Score=51.48 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~- 474 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++.++++-
T Consensus 3 k~vlItGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFL----------ARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIA 72 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 46888876 788999999998 789999999999987665432 23567899999998776541
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 73 ~~~~~~~~id~li~~A 88 (250)
T 2cfc_A 73 ATMEQFGAIDVLVNNA 88 (250)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHhCCCCEEEECC
Confidence 13568776654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.12 Score=51.56 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=52.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++.++++
T Consensus 14 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 83 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLA----------AEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYV 83 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHH
Confidence 46778875 788999999998 789999999999987655432 2356688999999877643
Q ss_pred -----CCCCCcEEEEE
Q 006034 474 -----GITSPKAVMIM 484 (663)
Q Consensus 474 -----~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 84 ~~~~~~~g~id~lv~n 99 (267)
T 1iy8_A 84 TATTERFGRIDGFFNN 99 (267)
T ss_dssp HHHHHHHSCCSEEEEC
T ss_pred HHHHHHcCCCCEEEEC
Confidence 12256766654
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.046 Score=57.39 Aligned_cols=84 Identities=20% Similarity=0.109 Sum_probs=55.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCC-CHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS-RPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~-~~~~L~~a~i~~a~~vv 482 (663)
++++|+|.|..|..+++..+ +.|++++++|.|++... .+.-..++.-|.+ |.+.+.+ -.+++|.++
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak----------~~G~~vv~vd~~~~~~~--~~~aD~~~~~~~~~d~~~~~~-~~~~~D~v~ 68 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSK----------KAGMKVVLVDKNPQALI--RNYADEFYCFDVIKEPEKLLE-LSKRVDAVL 68 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCTTCTT--TTTSSEEEECCTTTCHHHHHH-HHTSSSEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCChh--HhhCCEEEECCCCcCHHHHHH-HhcCCCEEE
Confidence 47999999999999999997 89999999999987532 1112234555554 4444332 235788887
Q ss_pred EEcCCHHHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRL 500 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~ 500 (663)
...++...+-.....+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~ 86 (363)
T 4ffl_A 69 PVNENLACIEFLNSIKEK 86 (363)
T ss_dssp ECCCCHHHHHHHHHHGGG
T ss_pred ECCCChhHHHHHHHHHHH
Confidence 777665444443333333
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.81 E-value=0.13 Score=51.58 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=55.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhc------C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a------~ 474 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+. +..++.+|.+|++-++++ .
T Consensus 10 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (270)
T 1yde_A 10 KVVVVTGGGRGIGAGIVRAFV----------NSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRR 79 (270)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788875 789999999998 7899999999999887766542 467789999999877653 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 80 ~g~iD~lv~nA 90 (270)
T 1yde_A 80 FGRLDCVVNNA 90 (270)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 23567666543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.12 Score=50.91 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++.++++
T Consensus 8 k~~lVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~ 77 (247)
T 2jah_A 8 KVALITGASSGIGEATARALA----------AEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVAS 77 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 46788875 789999999998 789999999999987665442 2 356788999999877643
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~g~id~lv~nA 92 (247)
T 2jah_A 78 TVEALGGLDILVNNA 92 (247)
T ss_dssp HHHHHSCCSEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 123567776543
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.26 Score=51.21 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=69.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCH-HHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRP-AVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~-~~L~~a~i~~a~~ 480 (663)
-+|.|+|+|++|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+.. .+ +|. +.+++ .++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~g~~-~~---~~~~~~l~~---~~~D~ 68 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAA---------NPDLELVVIADPFIEGAQRLAEANGAE-AV---ASPDEVFAR---DDIDG 68 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHTTTCE-EE---SSHHHHTTC---SCCCE
T ss_pred eEEEEECCcHHHHHHHHHHHh---------CCCcEEEEEECCCHHHHHHHHHHcCCc-ee---CCHHHHhcC---CCCCE
Confidence 379999999999999999972 4577777 78999999888765 3532 22 233 34432 47899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCeEEc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 530 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~vi~ 530 (663)
|+++++++.. ...+..+-+.+ .++++. +.+.+..+.+ ++.|.-..+.
T Consensus 69 V~i~tp~~~h-~~~~~~al~~g--k~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 122 (344)
T 3euw_A 69 IVIGSPTSTH-VDLITRAVERG--IPALCEKPIDLDIEMVRACKEKIGDGASKVMLG 122 (344)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CCEEECSCSCSCHHHHHHHHHHHGGGGGGEEEC
T ss_pred EEEeCCchhh-HHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHHHHhcCCeEEec
Confidence 9999988643 44445555554 256652 3444443333 4456544443
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.78 E-value=0.093 Score=51.31 Aligned_cols=72 Identities=14% Similarity=0.034 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhcCC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGI-- 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a~i-- 475 (663)
++++|.|. |-+|+.+++.|. +.| ++|++++++++..+.+.+. ...++.+|.+|++.++++--
T Consensus 4 k~vlItGasggiG~~la~~l~----------~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (250)
T 1yo6_A 4 GSVVVTGANRGIGLGLVQQLV----------KDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHH----------TCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHH----------hcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHH
Confidence 46778775 788999999998 788 9999999999887766543 45778999999987765310
Q ss_pred ------CCCcEEEEEc
Q 006034 476 ------TSPKAVMIMY 485 (663)
Q Consensus 476 ------~~a~~vv~~~ 485 (663)
.+.|.+|-..
T Consensus 74 ~~~~g~~~id~li~~A 89 (250)
T 1yo6_A 74 GEIVGSDGLSLLINNA 89 (250)
T ss_dssp HHHHGGGCCCEEEECC
T ss_pred HHhcCCCCCcEEEECC
Confidence 1567776543
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.038 Score=57.05 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH------HHHH-hcCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV------KESR-KLGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~------~~~~-~~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|.| .|-+|+.+++.|. ++|++|+++.++++.. +.+. ..+..++.||.+|++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 77 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLL----------QKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAP- 77 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH----------HTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHH-
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHH-
Confidence 45799999 5999999999997 7899999888776532 1222 23567889999998877654
Q ss_pred CCCCcEEEEE
Q 006034 475 ITSPKAVMIM 484 (663)
Q Consensus 475 i~~a~~vv~~ 484 (663)
++++|+|+-+
T Consensus 78 ~~~~D~Vih~ 87 (338)
T 2rh8_A 78 IAGCDFVFHV 87 (338)
T ss_dssp HTTCSEEEEE
T ss_pred HcCCCEEEEe
Confidence 3467877754
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.064 Score=54.04 Aligned_cols=112 Identities=14% Similarity=0.041 Sum_probs=68.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CC--CEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GF--PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~--~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|+|.|.+|+.+++.|. +.|.+|++.++++++.+.+.+. +. .+- ..+.+.+.+ .++|
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~----------~~G~~V~v~~R~~~~~~~la~~~~~~~~~~---~~~~~~~~~---~~~D 182 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLL----------SLDCAVTITNRTVSRAEELAKLFAHTGSIQ---ALSMDELEG---HEFD 182 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHHTGGGSSEE---ECCSGGGTT---CCCS
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHhhccCCee---EecHHHhcc---CCCC
Confidence 357999999999999999997 6789999999999998777642 11 222 233333322 6899
Q ss_pred EEEEEcCCHHH-HHHHHHHHHH-hCCCCcEEEEecChh---hHHHHHHcCCCeEEcCc
Q 006034 480 AVMIMYTDKKR-TIEAVQRLRL-AFPAIPIYARAQDMM---HLLDLKKAGATDAILEN 532 (663)
Q Consensus 480 ~vv~~~~dd~~-n~~~~~~~r~-~~~~~~iia~~~~~~---~~~~l~~~Gad~vi~p~ 532 (663)
.+|.+++.... +.. ..-.+ +.++..++=...++. ..+..++.|+..+++--
T Consensus 183 ivVn~t~~~~~~~~~--~i~~~~l~~~~~v~D~~y~p~~t~~~~~a~~~G~~~~~~G~ 238 (271)
T 1nyt_A 183 LIINATSSGISGDIP--AIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGL 238 (271)
T ss_dssp EEEECCSCGGGTCCC--CCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEEECTH
T ss_pred EEEECCCCCCCCCCC--CCCHHHcCCCCEEEEeccCCcCCHHHHHHHHcCCCeecCCH
Confidence 99998886432 100 00011 123322333333332 34556778885466553
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.1 Score=51.41 Aligned_cols=73 Identities=19% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.+.++|.|. |-+|+.+++.|. ++|++|++++++++..+.+.+ . ...++.+|.+|++-++++
T Consensus 9 ~k~vlITGas~giG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALA----------REGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMAD 78 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 346788886 678999999998 789999999999988766543 2 356788999999876653
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 79 ~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 79 RTLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 113667777654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.11 Score=51.83 Aligned_cols=72 Identities=25% Similarity=0.249 Sum_probs=55.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH-HHHHhcCCCEEEecCCCHHHHHhc------CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRKLGFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~-~~~~~~~~~vi~GD~~~~~~L~~a------~i 475 (663)
++++|.|. |-+|+.+++.|. +.|++|++++++++.. +.+.+.+..++.+|.+|++-++++ ..
T Consensus 28 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLL----------EHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQT 97 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHH----------HTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 46777776 679999999998 7899999999998764 445556788999999999876543 22
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.+|-..
T Consensus 98 g~iD~lv~nA 107 (260)
T 3gem_A 98 SSLRAVVHNA 107 (260)
T ss_dssp SCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 4678776544
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.12 Score=52.00 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=54.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++++++++..+.+.+ .....+.+|.+|++..+++
T Consensus 33 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 102 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYA----------EAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQ 102 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46777776 679999999998 789999999999987665443 2467889999999877653
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 103 ~~~~~g~iD~lvnnA 117 (276)
T 3r1i_A 103 MTGELGGIDIAVCNA 117 (276)
T ss_dssp HHHHHSCCSEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 112567766543
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.055 Score=55.02 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC--CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT--SP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~--~a 478 (663)
++++|.|. |-+|+.+++.|. +. |++|++++++++..+ .. .+..++.||.+|++.++++ ++ ++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~-~~-~~~~~~~~D~~d~~~~~~~-~~~~~~ 69 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLR----------KLYGTENVIASDIRKLNTD-VV-NSGPFEVVNALDFNQIEHL-VEVHKI 69 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHH----------HHHCGGGEEEEESCCCSCH-HH-HSSCEEECCTTCHHHHHHH-HHHTTC
T ss_pred ceEEEECCccHHHHHHHHHHH----------HhCCCCEEEEEcCCCcccc-cc-CCCceEEecCCCHHHHHHH-HhhcCC
Confidence 46999998 999999999997 55 899999998876532 22 3678999999999887764 22 67
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.||-+..
T Consensus 70 d~vih~a~ 77 (312)
T 2yy7_A 70 TDIYLMAA 77 (312)
T ss_dssp CEEEECCC
T ss_pred CEEEECCc
Confidence 88876643
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.13 Score=50.80 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=54.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---------cCCCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---------~~~~vi~GD~~~~~~L~~ 472 (663)
.+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-.++
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLA----------TDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHH----------HHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHH
Confidence 456788886 779999999998 789999999999988766543 345678899999886654
Q ss_pred c------CCCCCcEEEEEc
Q 006034 473 A------GITSPKAVMIMY 485 (663)
Q Consensus 473 a------~i~~a~~vv~~~ 485 (663)
+ ...+.|.+|-..
T Consensus 77 ~~~~~~~~~g~iD~lvnnA 95 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAA 95 (250)
T ss_dssp HHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECC
Confidence 3 113567666544
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.71 E-value=0.13 Score=51.23 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+. ...++.+|.+|++.++++
T Consensus 7 k~vlITGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFA----------REGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE 76 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46788876 789999999998 7899999999999987776542 456788999999877653
Q ss_pred CCCCCcEEEEE
Q 006034 474 GITSPKAVMIM 484 (663)
Q Consensus 474 ~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 77 ~~g~iD~lvnn 87 (263)
T 2a4k_A 77 EFGRLHGVAHF 87 (263)
T ss_dssp HHSCCCEEEEG
T ss_pred HcCCCcEEEEC
Confidence 12356766644
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.16 Score=51.22 Aligned_cols=116 Identities=11% Similarity=-0.076 Sum_probs=71.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc-C-CCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-G-FPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~-~-~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|+|.|..|+.++..|. +.|. ++.++++++++++.+.+. + ..+-.-+..| +.+ .++|
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~----------~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~---l~~---~~~D 183 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFL----------QAGPSELVIANRDMAKALALRNELDHSRLRISRYEA---LEG---QSFD 183 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG---GTT---CCCS
T ss_pred CCEEEEECccHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH---hcc---cCCC
Confidence 468999999999999999998 6785 899999999998887753 1 1122222211 222 7899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH---HHHHHcCCCeEEcCchH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL---LDLKKAGATDAILENAE 534 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~---~~l~~~Gad~vi~p~~~ 534 (663)
.+|.+|+.....-....-...+.++.-++=.+.++... +..++.|+..+++-...
T Consensus 184 ivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~G~~~~~~Gl~M 241 (272)
T 3pwz_A 184 IVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLTPFLRLAREQGQARLADGVGM 241 (272)
T ss_dssp EEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSCHHHHHHHHHSCCEEECTHHH
T ss_pred EEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCCHHHHHHHHCCCCEEECCHHH
Confidence 88888764321000000111234443344455665433 44567788767777653
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.24 Score=51.23 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++-|+|+|++|+.+|+.|. ..|.+|++.|++++..+ ...-.+.-.+-++.+ +++|.|
T Consensus 136 ~gktvGIiGlG~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~-----~~~~~~~~~~l~ell-----~~aDvV 195 (324)
T 3evt_A 136 TGQQLLIYGTGQIGQSLAAKAS----------ALGMHVIGVNTTGHPAD-----HFHETVAFTATADAL-----ATANFI 195 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSCCCCT-----TCSEEEEGGGCHHHH-----HHCSEE
T ss_pred cCCeEEEECcCHHHHHHHHHHH----------hCCCEEEEECCCcchhH-----hHhhccccCCHHHHH-----hhCCEE
Confidence 3457999999999999999997 78999999999876533 222222222223444 468888
Q ss_pred EEEcCCHH--HHHHHHHHHHHhCCC
Q 006034 482 MIMYTDKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~--~n~~~~~~~r~~~~~ 504 (663)
++..+..+ .++.-......+.|+
T Consensus 196 ~l~lPlt~~t~~li~~~~l~~mk~g 220 (324)
T 3evt_A 196 VNALPLTPTTHHLFSTELFQQTKQQ 220 (324)
T ss_dssp EECCCCCGGGTTCBSHHHHHTCCSC
T ss_pred EEcCCCchHHHHhcCHHHHhcCCCC
Confidence 88877543 233323444555555
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.14 Score=50.94 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=53.3
Q ss_pred CcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh---HHHHHHHhc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---SVVKESRKL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~---~~~~~~~~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++ +..+.+.+. ...++.+|.+|++.++++
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFA 79 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHH----------HTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHH----------HCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHH
Confidence 46888887 589999999998 7899999999987 444544432 357889999999876542
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 80 ~~~~~~g~iD~lv~~A 95 (265)
T 1qsg_A 80 ELGKVWPKFDGFVHSI 95 (265)
T ss_dssp HHHTTCSSEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 233567776543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.14 Score=50.82 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=53.2
Q ss_pred CcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---HHHHHHh--cCCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRK--LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---~~~~~~~--~~~~vi~GD~~~~~~L~~a~- 474 (663)
+.++|.|. |-+|+.+++.|. ++|++|++++++++ ..+.+.+ .+..++.+|.+|++.++++-
T Consensus 9 k~vlVTGas~~~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (261)
T 2wyu_A 9 KKALVMGVTNQRSLGFAIAAKLK----------EAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFA 78 (261)
T ss_dssp CEEEEESCCSSSSHHHHHHHHHH----------HHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHH
Confidence 46889997 589999999998 78999999999986 4444443 23678899999998776531
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 79 ~~~~~~g~iD~lv~~A 94 (261)
T 2wyu_A 79 GVKEAFGGLDYLVHAI 94 (261)
T ss_dssp HHHHHHSSEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 12567666543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.13 Score=51.31 Aligned_cols=131 Identities=15% Similarity=-0.010 Sum_probs=76.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|+|.|..|+.++..|. +.|. ++.+.++++++++.+.+. +... +. +.+.+ -++++|.+|.
T Consensus 110 ~vliiGaGg~a~ai~~~L~----------~~G~~~I~v~nR~~~ka~~la~~-~~~~--~~---~~~~~-~~~~aDiVIn 172 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALL----------QMGVKDIWVVNRTIERAKALDFP-VKIF--SL---DQLDE-VVKKAKSLFN 172 (253)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCCEEEEESCHHHHHTCCSS-CEEE--EG---GGHHH-HHHTCSEEEE
T ss_pred eEEEECcHHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHH-cccC--CH---HHHHh-hhcCCCEEEE
Confidence 8999999999999999997 6777 899999999998877653 2221 11 12222 2457898888
Q ss_pred EcCCHHH-HHHHHHHHHHhCCCCcEEEEecC-hhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHH
Q 006034 484 MYTDKKR-TIEAVQRLRLAFPAIPIYARAQD-MMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDD 553 (663)
Q Consensus 484 ~~~dd~~-n~~~~~~~r~~~~~~~iia~~~~-~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~ 553 (663)
+|+.... +.. ......+.++.-++-.+.+ ....+..++.|+..+++-....-.|-+...--..|.+|+.
T Consensus 173 atp~gm~p~~~-~i~~~~l~~~~~V~Divy~~T~ll~~A~~~G~~~~~~Gl~MLv~Qa~~af~~wtg~~~~~ 243 (253)
T 3u62_A 173 TTSVGMKGEEL-PVSDDSLKNLSLVYDVIYFDTPLVVKARKLGVKHIIKGNLMFYYQAMENLKIWGIYDEEV 243 (253)
T ss_dssp CSSTTTTSCCC-SCCHHHHTTCSEEEECSSSCCHHHHHHHHHTCSEEECTHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCCCCCCCCC-CCCHHHhCcCCEEEEeeCCCcHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHhCCCHHH
Confidence 7753100 000 0011223455334444443 3444556778886455554433333343444444666644
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.1 Score=51.59 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=54.4
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------~ 474 (663)
+++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++ .
T Consensus 2 ~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 2 IVLVTGATAGFGECITRRFI----------QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp EEEETTTTSTTHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred EEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4677775 789999999998 789999999999988776654 2466788999999877653 2
Q ss_pred CCCCcEEEEE
Q 006034 475 ITSPKAVMIM 484 (663)
Q Consensus 475 i~~a~~vv~~ 484 (663)
..+.|.+|-.
T Consensus 72 ~g~iD~lvnn 81 (248)
T 3asu_A 72 WCNIDILVNN 81 (248)
T ss_dssp TCCCCEEEEC
T ss_pred CCCCCEEEEC
Confidence 2367877654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.15 Score=49.72 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=55.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~i 475 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-++++--
T Consensus 3 k~vlITGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALA----------RDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence 46888886 568999999998 789999999999988665432 245678899999998876522
Q ss_pred ------CCCcEEEEEc
Q 006034 476 ------TSPKAVMIMY 485 (663)
Q Consensus 476 ------~~a~~vv~~~ 485 (663)
.+.|.+|-..
T Consensus 73 ~~~~~~g~id~li~~A 88 (235)
T 3l77_A 73 KVLERFGDVDVVVANA 88 (235)
T ss_dssp -HHHHHSSCSEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 2568776654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=92.64 E-value=0.085 Score=53.26 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c---CCCEEEecCCCHHHHHhc-
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L---GFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~---~~~vi~GD~~~~~~L~~a- 473 (663)
.++++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++.++++
T Consensus 28 ~k~vlITGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 97 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLA----------KMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFV 97 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH
Confidence 356788887 789999999998 789999999999988765543 1 356788999998766543
Q ss_pred -----CCCCCcEEEEE
Q 006034 474 -----GITSPKAVMIM 484 (663)
Q Consensus 474 -----~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 98 ~~~~~~~g~iD~li~n 113 (286)
T 1xu9_A 98 AQAGKLMGGLDMLILN 113 (286)
T ss_dssp HHHHHHHTSCSEEEEC
T ss_pred HHHHHHcCCCCEEEEC
Confidence 11366777643
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.19 Score=51.58 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=68.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-++.|+|+|++|+..++.|.+ ..+.+++ +.|.|+++.+.+.+. .. .+. +-++.+++ .++|+|+
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~---------~~~~~~v~v~d~~~~~~~~~~~~-~~-~~~--~~~~~l~~---~~~D~V~ 74 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAG---------LPGAALVRLASSNPDNLALVPPG-CV-IES--DWRSVVSA---PEVEAVI 74 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHH---------CTTEEEEEEEESCHHHHTTCCTT-CE-EES--STHHHHTC---TTCCEEE
T ss_pred ceEEEECCcHHHHHHHHHHHh---------CCCcEEEEEEeCCHHHHHHHHhh-Cc-ccC--CHHHHhhC---CCCCEEE
Confidence 479999999999999999972 4566655 889999988766554 22 222 23445543 4689999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p 531 (663)
++++++.. ...+..+-+.+ .++++. +.+.+..+ ..++.|....+..
T Consensus 75 i~tp~~~h-~~~~~~al~~G--k~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~ 127 (315)
T 3c1a_A 75 IATPPATH-AEITLAAIASG--KAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEH 127 (315)
T ss_dssp EESCGGGH-HHHHHHHHHTT--CEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EeCChHHH-HHHHHHHHHCC--CcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 99987643 34444444443 256654 23443333 3456787765543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.15 Score=50.66 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=54.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++-.+++
T Consensus 7 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 7 KVVIITGGSSGMGKGMATRFA----------KEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45677776 679999999998 789999999999998776653 1356788999999876553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~g~id~lv~nA 91 (257)
T 3imf_A 77 IDEKFGRIDILINNA 91 (257)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 113567776544
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.082 Score=55.01 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=55.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC-----CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-----WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~-----~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i 475 (663)
++|+|.|. |-+|+.+++.|. ++| ++|++++++++... ....+..++.||.+|++.++++ +.
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~----------~~g~~~~~~~V~~~~r~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~ 70 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILP----------LADTPGGPWKVYGVARRTRPAW-HEDNPINYVQCDISDPDDSQAKLSPL 70 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTT----------STTCTTCSEEEEEEESSCCCSC-CCSSCCEEEECCTTSHHHHHHHHTTC
T ss_pred CEEEEECCCcHHHHHHHHHHH----------hCCCCCCceEEEEEeCCCCccc-cccCceEEEEeecCCHHHHHHHHhcC
Confidence 36899986 999999999997 677 89999999876533 1234678899999999988764 33
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
+++|.|+-+.
T Consensus 71 ~~~d~vih~a 80 (364)
T 2v6g_A 71 TDVTHVFYVT 80 (364)
T ss_dssp TTCCEEEECC
T ss_pred CCCCEEEECC
Confidence 3489887764
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.13 Score=51.15 Aligned_cols=72 Identities=15% Similarity=0.024 Sum_probs=54.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhcC-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a~----- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++.++++=
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMV----------AEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT 77 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHH
Confidence 46888875 678999999998 789999999999988766543 23567899999998776531
Q ss_pred -CCCCcEEEEEc
Q 006034 475 -ITSPKAVMIMY 485 (663)
Q Consensus 475 -i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 78 ~~g~iD~lv~~A 89 (260)
T 1nff_A 78 AFGGLHVLVNNA 89 (260)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 12577776553
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.098 Score=51.85 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=54.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhcC-
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a~- 474 (663)
.+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++-.+++-
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 76 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFA----------AEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLN 76 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHH
Confidence 356788886 568999999998 789999999999987655443 2 3567889999998775431
Q ss_pred -C---CCCcEEEEEc
Q 006034 475 -I---TSPKAVMIMY 485 (663)
Q Consensus 475 -i---~~a~~vv~~~ 485 (663)
+ .+.|.+|-..
T Consensus 77 ~~~~~g~id~lv~nA 91 (252)
T 3h7a_A 77 AADAHAPLEVTIFNV 91 (252)
T ss_dssp HHHHHSCEEEEEECC
T ss_pred HHHhhCCceEEEECC
Confidence 0 3567666544
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.12 Score=52.03 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=54.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc-----C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA-----G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a-----~ 474 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++ .
T Consensus 31 k~vlVTGas~GIG~aia~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLH----------ADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQ 100 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45777776 678999999998 789999999999998877654 2467889999999876542 1
Q ss_pred CCCCcEEEEE
Q 006034 475 ITSPKAVMIM 484 (663)
Q Consensus 475 i~~a~~vv~~ 484 (663)
..+.|.+|..
T Consensus 101 ~~~id~lv~~ 110 (281)
T 3ppi_A 101 LGRLRYAVVA 110 (281)
T ss_dssp SSEEEEEEEC
T ss_pred hCCCCeEEEc
Confidence 2345666544
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.14 Score=50.98 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHh
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~ 472 (663)
++++ ++|-|. +-+|+.+++.|. ++|.+|++.|+|+++.++..+ .+ ...+.+|.+|++-.++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la----------~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~ 73 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFA----------LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEE 73 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 4444 455565 569999999998 799999999999998765543 33 4457889998887654
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.086 Score=51.16 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=49.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCE-EEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~v-vvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...+++|+|.|+.|+.+++.+.. +..+.++ -++|.||++..... .+.++. + ..| +++.--+. |.
T Consensus 84 ~~~rV~IIGAG~~G~~La~~~~~--------~~~g~~iVg~~D~dp~k~g~~i-~gv~V~-~-~~d---l~eli~~~-D~ 148 (215)
T 2vt3_A 84 EMTDVILIGVGNLGTAFLHYNFT--------KNNNTKISMAFDINESKIGTEV-GGVPVY-N-LDD---LEQHVKDE-SV 148 (215)
T ss_dssp ---CEEEECCSHHHHHHHHCC--------------CCEEEEEESCTTTTTCEE-TTEEEE-E-GGG---HHHHCSSC-CE
T ss_pred CCCEEEEEccCHHHHHHHHHHhc--------ccCCcEEEEEEeCCHHHHHhHh-cCCeee-c-hhh---HHHHHHhC-CE
Confidence 34579999999999999995320 1456654 47899998765322 244444 3 333 32221123 99
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
++++++++... .++..+.+.+
T Consensus 149 ViIAvPs~~~~-ei~~~l~~aG 169 (215)
T 2vt3_A 149 AILTVPAVAAQ-SITDRLVALG 169 (215)
T ss_dssp EEECSCHHHHH-HHHHHHHHTT
T ss_pred EEEecCchhHH-HHHHHHHHcC
Confidence 99999876543 5566666655
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.11 Score=51.57 Aligned_cols=72 Identities=19% Similarity=0.057 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhcC-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a~----- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++.++++=
T Consensus 13 k~vlVTGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (265)
T 2o23_A 13 LVAVITGGASGLGLATAERLV----------GQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKG 82 (265)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46788876 788999999998 789999999999887665543 24677899999998776531
Q ss_pred -CCCCcEEEEEc
Q 006034 475 -ITSPKAVMIMY 485 (663)
Q Consensus 475 -i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 83 ~~g~id~li~~A 94 (265)
T 2o23_A 83 KFGRVDVAVNCA 94 (265)
T ss_dssp HHSCCCEEEECC
T ss_pred HCCCCCEEEECC
Confidence 12677776543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.12 Score=51.35 Aligned_cols=72 Identities=10% Similarity=0.004 Sum_probs=53.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a~-- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++=
T Consensus 10 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELA----------SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNT 79 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46788875 688999999998 789999999999987655432 2 3567889999998765431
Q ss_pred ----C-CCCcEEEEEc
Q 006034 475 ----I-TSPKAVMIMY 485 (663)
Q Consensus 475 ----i-~~a~~vv~~~ 485 (663)
. .+.|.+|-..
T Consensus 80 ~~~~~~g~id~lv~~A 95 (260)
T 2ae2_A 80 VANHFHGKLNILVNNA 95 (260)
T ss_dssp HHHHTTTCCCEEEECC
T ss_pred HHHHcCCCCCEEEECC
Confidence 1 4678776554
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.58 Score=47.89 Aligned_cols=134 Identities=14% Similarity=0.179 Sum_probs=81.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH-h--c-------CCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR-K--L-------GFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~-~--~-------~~~vi~GD~~~~~~L~~ 472 (663)
.+|.|+|.|.+|..++..|. ..++ +++++|.|+++.+... + + ...+.. . +|.+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la----------~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~-t-~d~~---- 66 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLA----------AKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG-T-NNYA---- 66 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-E-SCGG----
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE-C-CCHH----
Confidence 47999999999999999997 5554 7999999997765422 1 1 122222 1 2222
Q ss_pred cCCCCCcEEEEEcC---------CH--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-cCC--CeEEcC-
Q 006034 473 AGITSPKAVMIMYT---------DK--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILE- 531 (663)
Q Consensus 473 a~i~~a~~vv~~~~---------dd--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l~~-~Ga--d~vi~p- 531 (663)
.+++||.||.+.+ +| ..|.. ++..+++..|+..++. +.||.+. ..+++ .|. ++|+--
T Consensus 67 -a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~-~tNPv~~~t~~~~~~~~~~~~rviG~g 144 (309)
T 1ur5_A 67 -DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM-VNNPLDAMTYLAAEVSGFPKERVIGQA 144 (309)
T ss_dssp -GGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEE-CCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred -HHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-cCCchHHHHHHHHHHcCCCHHHEEECC
Confidence 2678998888862 22 34543 3444555677755544 5555433 23333 343 367766
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 ~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
...-..++.+.+-+.+++++..++
T Consensus 145 t~LD~~r~~~~la~~lgv~~~~v~ 168 (309)
T 1ur5_A 145 GVLDAARYRTFIAMEAGVSVEDVQ 168 (309)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred cchHHHHHHHHHHHHhCCChhhee
Confidence 444455666666677777765443
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.1 Score=51.07 Aligned_cols=72 Identities=10% Similarity=0.047 Sum_probs=54.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++
T Consensus 8 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLA----------SAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFE 77 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHH
Confidence 45777765 789999999998 789999999999987665432 2356788999999887654
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~~~~~d~vi~~A 93 (248)
T 2pnf_A 78 EIYNLVDGIDILVNNA 93 (248)
T ss_dssp HHHHHSSCCSEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 123678777654
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.041 Score=55.05 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=54.7
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++++|.| .|-+|+.+++.|. ++|++|++.++++++.+ ..+..++.+|.+|++.++++ +++.|.+|
T Consensus 4 k~vlVTGasg~IG~~la~~L~----------~~G~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~-~~~~D~vi 69 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLA----------PMAEILRLADLSPLDPA---GPNEECVQCDLADANAVNAM-VAGCDGIV 69 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTG----------GGEEEEEEEESSCCCCC---CTTEEEEECCTTCHHHHHHH-HTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHH----------hcCCEEEEEecCCcccc---CCCCEEEEcCCCCHHHHHHH-HcCCCEEE
Confidence 4688888 5899999999997 78999999999886543 34578899999999988764 34788777
Q ss_pred EEc
Q 006034 483 IMY 485 (663)
Q Consensus 483 ~~~ 485 (663)
-..
T Consensus 70 ~~A 72 (267)
T 3rft_A 70 HLG 72 (267)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.13 Score=51.11 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=54.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+ .....+.+|.+|++-.+++
T Consensus 9 k~~lVTGas~gIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLV----------EGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 46788876 679999999998 789999999999998877654 3467889999999876542
Q ss_pred CCCCCcEEEEE
Q 006034 474 GITSPKAVMIM 484 (663)
Q Consensus 474 ~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 79 ~~g~id~lv~n 89 (255)
T 4eso_A 79 TLGAIDLLHIN 89 (255)
T ss_dssp HHSSEEEEEEC
T ss_pred HhCCCCEEEEC
Confidence 12356766554
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.13 Score=51.56 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=53.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC----CCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG----FPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~----~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+.+ .+ ..++.+|.+|++.++++
T Consensus 33 k~vlVTGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 102 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALV----------QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 102 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHH
Confidence 46788875 789999999998 789999999999887665442 22 45688999999876543
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 103 ~~~~~~~g~iD~vi~~A 119 (279)
T 1xg5_A 103 SAIRSQHSGVDICINNA 119 (279)
T ss_dssp HHHHHHHCCCSEEEECC
T ss_pred HHHHHhCCCCCEEEECC
Confidence 123678777654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.15 Score=50.72 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCcEEEEcCC-c--chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH---h----cCCCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGFG-Q--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K----LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~g-~--~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~---~----~~~~vi~GD~~~~~~L~~ 472 (663)
.++++|.|.+ . +|+.+++.|. ++|++|++++++++..+.+. + ....++.+|.+|++-.++
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 76 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLH----------EAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIET 76 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHH----------HCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHH
Confidence 3568888874 4 8999999998 78999999999875444333 2 147789999999987655
Q ss_pred c------CCCCCcEEEEE
Q 006034 473 A------GITSPKAVMIM 484 (663)
Q Consensus 473 a------~i~~a~~vv~~ 484 (663)
+ ...+.|.+|-.
T Consensus 77 ~~~~~~~~~g~id~li~~ 94 (266)
T 3oig_A 77 CFASIKEQVGVIHGIAHC 94 (266)
T ss_dssp HHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHhCCeeEEEEc
Confidence 3 11256766654
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.45 Score=42.31 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=61.8
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCC-HHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcE
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASR-PAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPI 507 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~-~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~i 507 (663)
..+.+|.++|.|+...+.+. +.+...+.+.+.+ .+.++...-.+.|.+++-.+- +......+..+|+.+|++++
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 45667888888877654443 3443333322332 344444433567877776553 23456778888999999888
Q ss_pred EEEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 508 YARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 508 ia~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
+...... +......+.|++.++...
T Consensus 93 i~~s~~~~~~~~~~~~~~g~~~~l~Kp 119 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQGAAGFLLKD 119 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETT
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEecC
Confidence 8776654 455577889999876654
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.12 Score=53.13 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+++.|. ..|.+|++.|++++.. ...+.|... .+-++.++ ++|.|
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~----------~~G~~V~~~d~~~~~~-~~~~~g~~~----~~l~ell~-----~aDvV 200 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIAN----------AMGMKVLAYDILDIRE-KAEKINAKA----VSLEELLK-----NSDVI 200 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHH----------HTTCEEEEECSSCCHH-HHHHTTCEE----CCHHHHHH-----HCSEE
T ss_pred CCCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEECCCcchh-HHHhcCcee----cCHHHHHh-----hCCEE
Confidence 3457999999999999999997 7899999999998764 344555442 12234443 67888
Q ss_pred EEEcCCHH
Q 006034 482 MIMYTDKK 489 (663)
Q Consensus 482 v~~~~dd~ 489 (663)
+.+.+.+.
T Consensus 201 vl~~P~~~ 208 (313)
T 2ekl_A 201 SLHVTVSK 208 (313)
T ss_dssp EECCCCCT
T ss_pred EEeccCCh
Confidence 88887644
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.73 Score=52.97 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=36.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
-++|.|+|.|.+|..+|..|. +.|++|++.|.|++.++..
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la----------~aG~~V~l~D~~~~~~~~~ 351 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALI----------LSNYPVILKEVNEKFLEAG 351 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHH----------TTTCCEEEECSSHHHHHHH
T ss_pred CcEEEEEcCCHhhHHHHHHHH----------hCCCEEEEEECCHHHHHHH
Confidence 357999999999999999998 7899999999999987764
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.14 Score=50.80 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=53.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-++++=
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFA----------KEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVE 77 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 46788876 789999999998 789999999999987655432 23567889999998765531
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 78 ~~~~~~g~id~lv~~A 93 (263)
T 3ai3_A 78 SVRSSFGGADILVNNA 93 (263)
T ss_dssp HHHHHHSSCSEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 13678776654
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.12 Score=51.99 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=53.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c-----CCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-----GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~-----~~~vi~GD~~~~~~L~~a 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++|++++..+...+ . ...++.+|.+|++-.+++
T Consensus 12 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~ 81 (281)
T 3svt_A 12 RTYLVTGGGSGIGKGVAAGLV----------AAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARA 81 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHH
Confidence 46778876 678999999998 789999999999988665443 2 356788999999866543
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 82 ~~~~~~~~g~id~lv~nA 99 (281)
T 3svt_A 82 VDAVTAWHGRLHGVVHCA 99 (281)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 112567666543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.76 Score=47.22 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=82.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHH-H---h----cCCC-EEEecCCCHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKES-R---K----LGFP-ILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~-~---~----~~~~-vi~GD~~~~~~L~~ 472 (663)
.+|.|+|.|.+|..++..|. ..+ .+++++|.|+++++.. . + .+.+ -+.+ .+.
T Consensus 7 ~KI~IIGaG~vG~~la~~l~----------~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~~----- 69 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLV----------NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GEY----- 69 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CCG-----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CCH-----
Confidence 47999999999999999886 334 5899999999876531 2 2 0011 2333 222
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCCC--eEEcC-
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGAT--DAILE- 531 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Gad--~vi~p- 531 (663)
..+++||.||++.+- | ..|.. ++..+++.+|+..++. +.||.+. ..+ +..|.+ +|+--
T Consensus 70 ~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPv~~~t~~~~k~~~~p~~rviG~g 148 (317)
T 3d0o_A 70 SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV-ATNPVDILAYATWKFSGLPKERVIGSG 148 (317)
T ss_dssp GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECT
T ss_pred HHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCcHHHHHHHHHHHhCCCHHHEEecC
Confidence 236799988887642 1 34443 3444566688877666 6676543 233 333544 67655
Q ss_pred chHHHHHHHHHHHHhcCCCHHHH
Q 006034 532 NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 532 ~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
...-..++.+.+-+.+++++..+
T Consensus 149 t~lD~~r~~~~la~~l~v~~~~v 171 (317)
T 3d0o_A 149 TILDSARFRLLLSEAFDVAPRSV 171 (317)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGC
T ss_pred ccccHHHHHHHHHHHhCcChhhE
Confidence 44445566666666667766443
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.32 E-value=0.098 Score=52.66 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c-----CCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-----GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~-----~~~vi~GD~~~~~~L~~a 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 76 (280)
T 1xkq_A 7 KTVIITGSSNGIGRTTAILFA----------QEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQI 76 (280)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHH
Confidence 45677765 779999999998 789999999999987665432 1 356788999999876543
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~~~~g~iD~lv~nA 94 (280)
T 1xkq_A 77 INSTLKQFGKIDVLVNNA 94 (280)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 123567766543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.19 Score=52.47 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|.|+|++|+.+++.|. +.|.+|++.|.|+++.+...+.+...+ +.++.|. .++|.+
T Consensus 174 ~GktV~I~G~GnVG~~~A~~l~----------~~GakVvvsD~~~~~~~~a~~~ga~~v----~~~ell~----~~~DIl 235 (355)
T 1c1d_A 174 DGLTVLVQGLGAVGGSLASLAA----------EAGAQLLVADTDTERVAHAVALGHTAV----ALEDVLS----TPCDVF 235 (355)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----CGGGGGG----CCCSEE
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCEEEEEeCCccHHHHHHhcCCEEe----ChHHhhc----Ccccee
Confidence 3468999999999999999997 789999999999887333333443332 1234443 377866
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEec-----ChhhHHHHHHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-----DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-----~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+-+... |..-...++.+. .++++..- +++..+.|++-|+ ++.|..
T Consensus 236 iP~A~~---~~I~~~~~~~lk--~~iVie~AN~p~t~~eA~~~L~~~gI--lv~Pd~ 285 (355)
T 1c1d_A 236 APCAMG---GVITTEVARTLD--CSVVAGAANNVIADEAASDILHARGI--LYAPDF 285 (355)
T ss_dssp EECSCS---CCBCHHHHHHCC--CSEECCSCTTCBCSHHHHHHHHHTTC--EECCHH
T ss_pred cHhHHH---hhcCHHHHhhCC--CCEEEECCCCCCCCHHHHHHHHhCCE--EEECCe
Confidence 543322 222223345554 35665433 2355678888875 677764
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.23 Score=51.15 Aligned_cols=109 Identities=11% Similarity=0.038 Sum_probs=67.9
Q ss_pred cEEEEcCCcchHHH-HHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCH-HHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVL-ANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRP-AVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~l-a~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~-~~L~~a~i~~a~~ 480 (663)
++.|+|+|++|+.. ++.|. +.+.+++ +.|.|+++.+.+.+ .+....+ +|. +.+++ .++|+
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~----------~~~~~~vav~d~~~~~~~~~~~~~g~~~~~---~~~~~~l~~---~~~D~ 65 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIR----------ATGGEVVSMMSTSAERGAAYATENGIGKSV---TSVEELVGD---PDVDA 65 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHH----------HTTCEEEEEECSCHHHHHHHHHHTTCSCCB---SCHHHHHTC---TTCCE
T ss_pred eEEEEcccHHHHHhhhHHhh----------cCCCeEEEEECCCHHHHHHHHHHcCCCccc---CCHHHHhcC---CCCCE
Confidence 58899999999998 88887 4667766 67999999887665 3443122 333 34432 46899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHH----HHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLD----LKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~----l~~~Gad~vi~p~ 532 (663)
|+++++++.. ...+..+-+.+ .++++. +.+.+..+. .++.|+...+...
T Consensus 66 V~i~tp~~~h-~~~~~~al~~G--k~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~ 121 (332)
T 2glx_A 66 VYVSTTNELH-REQTLAAIRAG--KHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHH 121 (332)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCC
T ss_pred EEEeCChhHh-HHHHHHHHHCC--CeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeeh
Confidence 9999987643 33333443433 356653 233333333 3556877666543
|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=92.30 E-value=0.34 Score=42.13 Aligned_cols=98 Identities=7% Similarity=-0.026 Sum_probs=63.5
Q ss_pred CCCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEE
Q 006034 434 TVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~ii 508 (663)
+...++.++|.|+...+.+.+ .++.+..-+ +-.+.++...-.+.|.+++-.+- +..-...+..+|+.+|+++++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~-~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAG-DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEES-SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEEC-CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 456789999988877555443 445554322 23344544444568877776553 234567788889999998888
Q ss_pred EEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 509 ARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 509 a~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
+...+. +......+.|++.++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP 109 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKP 109 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSS
T ss_pred EEecCcChHHHHHHHhCCcceeEcCC
Confidence 876644 466677899999877654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=92.30 E-value=0.62 Score=47.72 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=82.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH-HHh--cC-----CCEEEecCCCHHHHHhcCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE-SRK--LG-----FPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~-~~~--~~-----~~vi~GD~~~~~~L~~a~i~ 476 (663)
+|.|+|.|.+|..++-.|.. .....+++++|.|+++.+. +.+ +. ..-+.++ +.+ .++
T Consensus 2 KI~IiGaG~vG~~~a~~l~~--------~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~--~~~-----a~~ 66 (310)
T 2xxj_A 2 KVGIVGSGMVGSATAYALAL--------LGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG--SYG-----DLE 66 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------TTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEEC--CGG-----GGT
T ss_pred EEEEECCCHHHHHHHHHHHh--------CCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEEC--CHH-----HhC
Confidence 58999999999999998862 1123579999999987764 222 11 1123332 222 268
Q ss_pred CCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCCC--eEEcC-chHH
Q 006034 477 SPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGAT--DAILE-NAET 535 (663)
Q Consensus 477 ~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Gad--~vi~p-~~~~ 535 (663)
+||.||++.+- | ..|.. ++..+++.+|+..++. +.||.+. ..+ +..|.+ +|+-- ...-
T Consensus 67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD 145 (310)
T 2xxj_A 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV-ATNPVDVMTQVAYALSGLPPGRVVGSGTILD 145 (310)
T ss_dssp TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE-CSSSHHHHHHHHHHHHTCCGGGEEECTTHHH
T ss_pred CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEE-ecCchHHHHHHHHHHcCCCHHHEEecCcchh
Confidence 99988887643 2 34443 3455566789977666 5776543 223 334544 67666 4444
Q ss_pred HHHHHHHHHHhcCCCHHHH
Q 006034 536 SLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 536 ~~~la~~~~~~~~~~~~~~ 554 (663)
..++.+.+-+.+++++..+
T Consensus 146 ~~R~~~~la~~lgv~~~~v 164 (310)
T 2xxj_A 146 TARFRALLAEYLRVAPQSV 164 (310)
T ss_dssp HHHHHHHHHHHHTSCGGGE
T ss_pred HHHHHHHHHHHhCcCHHHe
Confidence 5566666666667766433
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.066 Score=55.42 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=54.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChH-----HHHHHHhcCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~-----~~~~~~~~~~~vi~GD~~~~~~L~~a~i 475 (663)
++++|.|. |-+|+.+++.|. +. |++|+++++++. ..+.+...+..++.||.+|++.++++ +
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~ 73 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVY----------NNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKL-A 73 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHH-H
T ss_pred cEEEEeCCccHHHHHHHHHHH----------HhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHH-h
Confidence 46999985 999999999997 44 899999998642 22222224677899999999988775 4
Q ss_pred CCCcEEEEEcC
Q 006034 476 TSPKAVMIMYT 486 (663)
Q Consensus 476 ~~a~~vv~~~~ 486 (663)
+++|.||-+..
T Consensus 74 ~~~d~vih~A~ 84 (348)
T 1oc2_A 74 AKADAIVHYAA 84 (348)
T ss_dssp TTCSEEEECCS
T ss_pred hcCCEEEECCc
Confidence 56688877654
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.42 Score=49.77 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=72.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHH-HHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPA-VLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~-~L~~a~i~~a~~ 480 (663)
-+|.|+|+|.+|+..++.|.+ .++.+++ +.|.|+++.+.+.+ .+.+. .+|.+ .+.+ .+.|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~---------~~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~---~~~D~ 69 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTK---------SEKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAR---EDVEM 69 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTT---------CSSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHC---SSCCE
T ss_pred ceEEEEccCHHHHHHHHHHHh---------CCCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcC---CCCCE
Confidence 479999999999999999972 4577766 66999999887765 45543 34444 4432 46899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p~ 532 (663)
|+++++++.. ...+..+-+.+ .++++. +.+.+..+ ..++.|.-..+...
T Consensus 70 V~i~tp~~~h-~~~~~~al~~g--k~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 125 (354)
T 3db2_A 70 VIITVPNDKH-AEVIEQCARSG--KHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHS 125 (354)
T ss_dssp EEECSCTTSH-HHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECG
T ss_pred EEEeCChHHH-HHHHHHHHHcC--CEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeec
Confidence 9999998643 33444454554 356663 33444433 33566776655443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.24 E-value=1.4 Score=45.79 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=83.2
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHH----HHhcCC---CEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRKLGF---PILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~----~~~~~~---~vi~GD~~~~~~L~ 471 (663)
..++|.|+|. |.+|..++..+. ..| .+++++|.|+++++- +.+..+ .+.. .+|. .
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~----------~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~--t~d~---~ 71 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAA----------MMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--TSDI---K 71 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHH----------HTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE--ESCH---H
T ss_pred CCCEEEEECCCChHHHHHHHHHH----------hcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE--cCCH---H
Confidence 4568999998 999999998775 344 589999999987653 333211 1111 1222 1
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH---HHHHcCC--CeEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGA--TDAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Ga--d~vi~p 531 (663)
..+++||.||++.+. | ..|.. ++..+++..|+..++..+.||.+.- ..+..|. ++|+.-
T Consensus 72 -~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~~k~sg~p~~rv~g~ 150 (343)
T 3fi9_A 72 -EALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTTL 150 (343)
T ss_dssp -HHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHHHHHHTCCGGGEEEE
T ss_pred -HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHHHHHcCCCcceEEEe
Confidence 124689988877432 2 35544 3445667788865455566765432 2344564 356655
Q ss_pred chHHHHHHHHHHHHhcCCCHHHH
Q 006034 532 NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 532 ~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
..+-..++-..+-+.++++|..+
T Consensus 151 t~LDs~R~~~~la~~l~v~~~~v 173 (343)
T 3fi9_A 151 AGLDSTRLQSELAKHFGIKQSLV 173 (343)
T ss_dssp CCHHHHHHHHHHHHHHTSCGGGE
T ss_pred cCcHHHHHHHHHHHHhCcCHHHc
Confidence 55555566666667777777554
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.086 Score=55.01 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=49.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-------CCEEEEeCChH-----HHHHHHhcCCCE-----------E
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-------WPFVAFDLNPS-----VVKESRKLGFPI-----------L 460 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-------~~vvvid~d~~-----~~~~~~~~~~~v-----------i 460 (663)
.+|.|+|.|.+|..++..|. +.| ++|.++|++++ +.+.+.+.+... +
T Consensus 9 mkI~iIG~G~mG~~~a~~l~----------~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVG----------GNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNV 78 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHH----------HHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTE
T ss_pred CeEEEECCCHHHHHHHHHHH----------hcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCe
Confidence 37999999999999999997 566 89999999998 777776532110 1
Q ss_pred EecCCCHHHHHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRPAVLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~~~L~~a~i~~a~~vv~~~~dd 488 (663)
... +|.+ + -++++|.|++++.++
T Consensus 79 ~~~-~~~~---~-~~~~aD~Vilav~~~ 101 (354)
T 1x0v_A 79 VAV-PDVV---Q-AAEDADILIFVVPHQ 101 (354)
T ss_dssp EEE-SSHH---H-HHTTCSEEEECCCGG
T ss_pred EEE-cCHH---H-HHcCCCEEEEeCCHH
Confidence 111 2221 1 135789999999874
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.2 Score=50.48 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=54.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++|++++..+...+ .....+.+|.+|++..+++
T Consensus 30 k~vlVTGas~gIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLA----------DEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 34666665 678999999998 789999999999998776654 3577889999999876542
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 100 ~~g~iD~lvnnA 111 (277)
T 3gvc_A 100 AFGGVDKLVANA 111 (277)
T ss_dssp HHSSCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 123567666543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.17 Score=50.81 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=54.0
Q ss_pred CcEEEEcC-Cc--chHHHHHHhcccccCCCCCCCCCCCEEEEeCCh--HHHHHHHh--cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQ--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRK--LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~--~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~--~~~~~~~~--~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |. +|+.+++.|. ++|++|+++++++ +..+.+.+ ....++.+|.+|++-++++
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMH----------REGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHH----------HTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHH----------HcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHH
Confidence 46777775 44 9999999998 7899999999998 66666654 2467889999999876653
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 97 ~~~~~g~id~li~nA 111 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSI 111 (280)
T ss_dssp HHHHCSSCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 123567776543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=92.22 E-value=0.18 Score=50.37 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=53.4
Q ss_pred CcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHh---cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRK---LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~---~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. +.|++|+++++++++ .+.+.+ ....++.+|.+|++-++++
T Consensus 8 k~vlVTGa~~s~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (269)
T 2h7i_A 8 KRILVSGIITDSSIAFHIARVAQ----------EQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGR 77 (269)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHH----------HTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHH----------HCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHH
Confidence 56888894 899999999998 789999999999876 355543 2467899999999876543
Q ss_pred -----C-CCCCcEEEEE
Q 006034 474 -----G-ITSPKAVMIM 484 (663)
Q Consensus 474 -----~-i~~a~~vv~~ 484 (663)
| ..+.|.+|-.
T Consensus 78 ~~~~~g~~~~iD~lv~n 94 (269)
T 2h7i_A 78 VTEAIGAGNKLDGVVHS 94 (269)
T ss_dssp HHHHHCTTCCEEEEEEC
T ss_pred HHHHhCCCCCceEEEEC
Confidence 1 1156777654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.074 Score=55.96 Aligned_cols=74 Identities=19% Similarity=0.103 Sum_probs=52.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++++|+|.|.+|+.+++.+. ..|.+|+++|+++++.+.+.+.+...+..+..+.+.+.+ -+.++|.+|-
T Consensus 168 ~~VlViGaGgvG~~aa~~a~----------~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvVI~ 236 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAV----------GLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET-AVAEADLLIG 236 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHH-HHcCCCEEEE
Confidence 78999999999999999997 788899999999999888875431111111123333322 1347898888
Q ss_pred EcCCH
Q 006034 484 MYTDK 488 (663)
Q Consensus 484 ~~~dd 488 (663)
++..+
T Consensus 237 ~~~~~ 241 (361)
T 1pjc_A 237 AVLVP 241 (361)
T ss_dssp CCCCT
T ss_pred CCCcC
Confidence 77653
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.21 E-value=0.15 Score=50.47 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 72 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLV----------KDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 72 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46888875 679999999998 789999999999987655432 2 356788999999876543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 73 ~~~~~g~id~lv~nA 87 (256)
T 1geg_A 73 ARKTLGGFDVIVNNA 87 (256)
T ss_dssp HHHHTTCCCEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 123678777644
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.11 Score=52.99 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=70.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|..|+.++..|. +.|. +|++.++++++++.+.+. +... ++..+.+.+.+ .++++|.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~----------~~G~~~V~v~nR~~~ka~~la~~~~~~~--~~~~~~~~~~~-~~~~aDi 207 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLL----------STAAERIDMANRTVEKAERLVREGDERR--SAYFSLAEAET-RLAEYDI 207 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTTCSEEEEECSSHHHHHHHHHHSCSSS--CCEECHHHHHH-TGGGCSE
T ss_pred CCEEEEECcHHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHhhhcc--CceeeHHHHHh-hhccCCE
Confidence 457999999999999999998 6787 899999999998887753 2210 01112233433 4578999
Q ss_pred EEEEcCCHHH-HHH-HHHHHHHhCCCCcEEEEecChh---hHHHHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKR-TIE-AVQRLRLAFPAIPIYARAQDMM---HLLDLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~-n~~-~~~~~r~~~~~~~iia~~~~~~---~~~~l~~~Gad~vi~p~ 532 (663)
+|.+++.... +.. .......+.++..++=...++. ..+..++.|+. +++--
T Consensus 208 vIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~v~Gl 263 (297)
T 2egg_A 208 IINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKWLKEAKARGAR-VQNGV 263 (297)
T ss_dssp EEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSCHHHHHHHHTTCE-EECSH
T ss_pred EEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCCHHHHHHHHCcCE-EECCH
Confidence 9998876431 100 0000011233433444444443 44556778884 55553
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.3 Score=50.93 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=72.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCC-CCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNT-VGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~-~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+-++.|+|+|++|+..++.|.+ . .+.+++ +.|.|+++.+.+.+ .+.. .+. +-++.+++ .+.|
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~---------~~~~~~lvav~d~~~~~~~~~~~~~~~~-~~~--~~~~ll~~---~~~D 77 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEK---------HADRAELIDVCDIDPAALKAAVERTGAR-GHA--SLTDMLAQ---TDAD 77 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHH---------TTTTEEEEEEECSSHHHHHHHHHHHCCE-EES--CHHHHHHH---CCCS
T ss_pred cceEEEEcCcHHHHHHHHHHHh---------CCCCeEEEEEEcCCHHHHHHHHHHcCCc-eeC--CHHHHhcC---CCCC
Confidence 3479999999999999999972 3 577766 77999999888765 4542 222 23455654 5789
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcCc
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILEN 532 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p~ 532 (663)
+|+++++++.. ...+..+-+.+ .++++. +.+.+..+ ..++.|.-..+...
T Consensus 78 ~V~i~tp~~~h-~~~~~~al~~g--k~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~ 134 (354)
T 3q2i_A 78 IVILTTPSGLH-PTQSIECSEAG--FHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQ 134 (354)
T ss_dssp EEEECSCGGGH-HHHHHHHHHTT--CEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred EEEECCCcHHH-HHHHHHHHHCC--CCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 99999998643 33444444444 356662 33444433 34666776655443
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.027 Score=54.21 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=47.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..++.|+|+|++|..+++.|. +.|++|.+.|++++ .+.+.+.+..+. +.++ -++++|.++
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~----------~~G~~V~~~~r~~~-~~~~~~~g~~~~----~~~~-----~~~~aDvVi 78 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKML----------QCGYSVVFGSRNPQ-VSSLLPRGAEVL----CYSE-----AASRSDVIV 78 (201)
Confidence 346999999999999999997 67899999999887 444443332211 1112 245789898
Q ss_pred EEcCCH
Q 006034 483 IMYTDK 488 (663)
Q Consensus 483 ~~~~dd 488 (663)
+++..+
T Consensus 79 lav~~~ 84 (201)
T 2yjz_A 79 LAVHRE 84 (201)
Confidence 888875
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=92.15 E-value=0.93 Score=40.30 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=66.1
Q ss_pred CCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEE
Q 006034 436 GWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 436 ~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+.++.++|.|+...+.+. +.|+.+..- .+-.+.++...-...|.+++-.+-+ ......+..+|+.+|++++++.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSF-ASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEE-CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 457899999987755443 467776643 3345566666667789888776532 3446677888888999998887
Q ss_pred ecCh--hhHHHHHHcCCCeEEcCc
Q 006034 511 AQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 511 ~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
.... +......+.|++.++...
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP 105 (155)
T 1qkk_A 82 TGHGDIPMAVQAIQDGAYDFIAKP 105 (155)
T ss_dssp ECGGGHHHHHHHHHTTCCEEEESS
T ss_pred ECCCChHHHHHHHhcCCCeEEeCC
Confidence 7644 455667789999877654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.14 Score=53.05 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=79.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH----h----cCCC-EEEecCCCHHHHHh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR----K----LGFP-ILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~----~----~~~~-vi~GD~~~~~~L~~ 472 (663)
+.+|.|+|.|.+|..++..|. ..|+ +|+++|.|+++++... + .+.. -+.+. +|. ++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la----------~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~---~e 74 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCA----------LRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-YSY---EA 74 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-CSH---HH
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe-CCH---HH
Confidence 357999999999999999997 5666 8999999998776521 1 1111 12211 232 22
Q ss_pred cCCCCCcEEEEEc--CC------------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHH-cCC--Ce
Q 006034 473 AGITSPKAVMIMY--TD------------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TD 527 (663)
Q Consensus 473 a~i~~a~~vv~~~--~d------------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~-~Ga--d~ 527 (663)
.+++||.||++. +. | ..|. .++..+++..|+..++ .+.|+.+. ..+++ .|. ++
T Consensus 75 -a~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi-~~tNP~~~~t~~~~~~~~~~~~r 152 (331)
T 1pzg_A 75 -ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII-VVTNPLDCMVKVMCEASGVPTNM 152 (331)
T ss_dssp -HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEE-ECCSSHHHHHHHHHHHHCCCGGG
T ss_pred -HhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE-EEcCchHHHHHHHHHhcCCChhc
Confidence 357899888886 21 1 1232 3455566677885544 45666543 23322 332 35
Q ss_pred EEcC-chHHHHHHHHHHHHhcCCCHHHH
Q 006034 528 AILE-NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 528 vi~p-~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
|+-- ...-..++.+.+-+.+++++..+
T Consensus 153 viG~gt~LD~~R~~~~la~~lgv~~~~v 180 (331)
T 1pzg_A 153 ICGMACMLDSGRFRRYVADALSVSPRDV 180 (331)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred EEeccchHHHHHHHHHHHHHhCCCHHHc
Confidence 5555 33333455555656666666433
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.16 Score=50.42 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+.+.+ . ...++.+|.+|++.++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLA----------EEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46788875 789999999998 789999999999987665432 2 356788999999866542
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 78 ~~~~~g~id~lv~n 91 (262)
T 1zem_A 78 VVRDFGKIDFLFNN 91 (262)
T ss_dssp HHHHHSCCCEEEEC
T ss_pred HHHHhCCCCEEEEC
Confidence 12356777654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.22 Score=50.64 Aligned_cols=72 Identities=15% Similarity=0.004 Sum_probs=53.2
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH---h--cCCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K--LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~---~--~~~~vi~GD~~~~~~L~~a~- 474 (663)
+.++|.|.+ -+|+.+++.|. ++|++|++++++++..+.+. + ....++.+|.+|++-.+++=
T Consensus 31 k~vlVTGasg~~GIG~~ia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 31 KKGVIIGVANDKSLAWGIAKAVC----------AQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Confidence 568888986 89999999998 78999999999976543332 2 24568899999998776531
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 101 ~~~~~~g~iD~lVnnA 116 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAV 116 (296)
T ss_dssp HHHHHHSCCSEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 13567776544
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.93 Score=46.81 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=79.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH----h----c--CCCEEEecCCCHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR----K----L--GFPILYGDASRPAVLL 471 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~----~----~--~~~vi~GD~~~~~~L~ 471 (663)
+.+|.|+|.|.+|..++..|. ..|+ +|+++|.|+++++... + . ... +.+. +|.+
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la----------~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~-i~~t-~d~~--- 78 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLG----------QKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAK-IFGE-NNYE--- 78 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCC-EEEE-SCGG---
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCE-EEEC-CCHH---
Confidence 357999999999999999997 5677 8999999998876422 1 0 112 2221 2222
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHHc---CCCeEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKKA---GATDAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l~~~---Gad~vi~p 531 (663)
.+++||.||.+.+- | .+|.. ++..+.+..|+..++. +.|+.+. ..+++. -.++|+--
T Consensus 79 --al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP~~~~t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 79 --YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC-ITNPLDAMVYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp --GGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEE-CCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred --HHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEE-ecCchHHHHHHHHHhcCCChhhEEEe
Confidence 36789999888621 1 23444 3444556678855444 4555543 233332 24455555
Q ss_pred -chHHHHHHHHHHHHhcCCCHHH
Q 006034 532 -NAETSLQLGSKLLKGFGVMSDD 553 (663)
Q Consensus 532 -~~~~~~~la~~~~~~~~~~~~~ 553 (663)
......++.+.+-+.+++++..
T Consensus 156 ~t~Ld~~R~~~~la~~lgv~~~~ 178 (328)
T 2hjr_A 156 SGVLDSARFRCNLSRALGVKPSD 178 (328)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CcHHHHHHHHHHHHHHhCCCHHH
Confidence 3444444555555566666543
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.056 Score=55.49 Aligned_cols=72 Identities=22% Similarity=0.210 Sum_probs=52.9
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC-CCCcEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI-TSPKAVM 482 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i-~~a~~vv 482 (663)
+++|.|. |-+|+.+++.|. +.|++|++++++++........+..++.+|.+|++.++++=- .++|.||
T Consensus 3 ~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vi 72 (330)
T 2c20_A 3 SILICGGAGYIGSHAVKKLV----------DEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVM 72 (330)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred EEEEECCCcHHHHHHHHHHH----------hCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence 6899985 999999999997 689999999987543211111257889999999988766411 2688887
Q ss_pred EEcC
Q 006034 483 IMYT 486 (663)
Q Consensus 483 ~~~~ 486 (663)
-+..
T Consensus 73 h~a~ 76 (330)
T 2c20_A 73 HFAA 76 (330)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 6653
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.09 E-value=1.6 Score=44.78 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=81.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC--hHHHHH----HHh------cCCCEEEecCCCHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN--PSVVKE----SRK------LGFPILYGDASRPAV 469 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d--~~~~~~----~~~------~~~~vi~GD~~~~~~ 469 (663)
.+++.|+|.|.+|..++..|. ..++ +++++|.+ +++.+- +.+ .... +.+. +|.
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~----------~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~-i~~t-~d~-- 73 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLA----------QKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDAN-IIGT-SDY-- 73 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCC-EEEE-SCG--
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCE-EEEc-CCH--
Confidence 468999999999999999997 5677 99999999 444322 111 1122 3321 122
Q ss_pred HHhcCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH---HHHHcCC--CeEE
Q 006034 470 LLSAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGA--TDAI 529 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Ga--d~vi 529 (663)
..+++||.||++.+. | +.|.. ++..+++.+|+.. +..+.||.+.- ..+..|. .+++
T Consensus 74 ---~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~-vlvvsNPvd~~t~~~~k~sg~p~~rvi 149 (315)
T 3tl2_A 74 ---ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAI-IVVLTNPVDAMTYSVFKEAGFPKERVI 149 (315)
T ss_dssp ---GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCE-EEECCSSHHHHHHHHHHHHCCCGGGEE
T ss_pred ---HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEECCChHHHHHHHHHHhcCCChHHEE
Confidence 356899988887532 2 34543 4445666788855 45555664432 2344564 3565
Q ss_pred cC-chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 530 LE-NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 530 ~p-~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
-- ...-..+....+-+.+++++..++
T Consensus 150 G~gt~LD~~R~~~~la~~lgv~~~~v~ 176 (315)
T 3tl2_A 150 GQSGVLDTARFRTFIAQELNLSVKDIT 176 (315)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred eeccCcHHHHHHHHHHHHhCcCHHHce
Confidence 55 333345556666666777775443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.14 Score=51.37 Aligned_cols=118 Identities=12% Similarity=0.013 Sum_probs=70.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++|+|.|..|+.++..|. +.|.++.++++++++++.+.+.+..+. +..+ +.++|.+|
T Consensus 118 ~k~vlvlGaGGaaraia~~L~----------~~G~~v~V~nRt~~ka~~la~~~~~~~--~~~~--------l~~~DiVI 177 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELK----------KQGLQVSVLNRSSRGLDFFQRLGCDCF--MEPP--------KSAFDLII 177 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCTTHHHHHHHTCEEE--SSCC--------SSCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeEe--cHHH--------hccCCEEE
Confidence 568999999999999999998 677999999999999988775453322 2221 22899888
Q ss_pred EEcCCHHH---HHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHcCCCeEEcCchHHHHHHHH
Q 006034 483 IMYTDKKR---TIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILENAETSLQLGS 541 (663)
Q Consensus 483 ~~~~dd~~---n~~~~~~~r~~~~~~~iia~~~~~--~~~~~l~~~Gad~vi~p~~~~~~~la~ 541 (663)
-+|+.... .+-.......+.++.-++=.+.++ ...+..++.|+. +++-....-.|-+.
T Consensus 178 naTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P~T~ll~~A~~~G~~-~~~Gl~MLv~Qa~~ 240 (269)
T 3phh_A 178 NATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTP-FQDGKDMLIYQAAL 240 (269)
T ss_dssp ECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSSCCHHHHHHHHTTCC-EECSHHHHHHHHHH
T ss_pred EcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCCchHHHHHHHHCcCE-EECCHHHHHHHHHH
Confidence 77764210 010000000122332333344554 233445677884 66666433333333
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.11 Score=53.89 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|++.|++++. +...+.|... .+.+-+ ++++|.|
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~-----~~l~el----l~~aDvV 223 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQ----------SFGMKTIGYDPIISP-EVSASFGVQQ-----LPLEEI----WPLCDFI 223 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSSCH-HHHHHTTCEE-----CCHHHH----GGGCSEE
T ss_pred CcCEEEEEeECHHHHHHHHHHH----------HCCCEEEEECCCcch-hhhhhcCcee-----CCHHHH----HhcCCEE
Confidence 3457999999999999999997 789999999998766 3444555432 233222 2478989
Q ss_pred EEEcCCHHHHH--HHHHHHHHhCCC
Q 006034 482 MIMYTDKKRTI--EAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n~--~~~~~~r~~~~~ 504 (663)
+++.+.++.+. .-....+.+.|+
T Consensus 224 ~l~~P~t~~t~~li~~~~l~~mk~g 248 (335)
T 2g76_A 224 TVHTPLLPSTTGLLNDNTFAQCKKG 248 (335)
T ss_dssp EECCCCCTTTTTSBCHHHHTTSCTT
T ss_pred EEecCCCHHHHHhhCHHHHhhCCCC
Confidence 88888754322 212344445555
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.61 Score=40.46 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC------HHHHHHHHHHHHHhCCCCc
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD------KKRTIEAVQRLRLAFPAIP 506 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d------d~~n~~~~~~~r~~~~~~~ 506 (663)
.++.++|.|+...+.+. +.|+.+..- .+-.+.++...-.+.|.+++-.+- +......+..+|+.+|+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITL-SSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEE-CCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEe-CCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 46778888877655444 245655532 222444444444567877776543 3345667788888889989
Q ss_pred EEEEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 507 IYARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 507 iia~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
++....+. +......+.|++.++...
T Consensus 83 ii~ls~~~~~~~~~~~~~~g~~~~l~kp 110 (140)
T 2qr3_A 83 VVLFTAYADIDLAVRGIKEGASDFVVKP 110 (140)
T ss_dssp EEEEEEGGGHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCHHHHHHHHHcCchheeeCC
Confidence 88776544 455677789998876543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.21 Score=50.35 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=53.3
Q ss_pred CcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---HHHHHHh--cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRK--LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---~~~~~~~--~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. +.|++|++++++++ ..+.+.+ .+..++.+|.+|++.++++
T Consensus 22 k~vlVTGas~~~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 91 (285)
T 2p91_A 22 KRALITGVANERSIAYGIAKSFH----------REGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKK 91 (285)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Confidence 46888887 589999999998 78999999999985 3444443 2367899999999876543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 92 ~~~~~~g~iD~lv~~A 107 (285)
T 2p91_A 92 FLEENWGSLDIIVHSI 107 (285)
T ss_dssp HHHHHTSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 123567666543
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.15 Score=55.92 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=37.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLG 456 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~ 456 (663)
.+|.|+|.|.+|..+|..|. +. |++|+++|.|+++++.+.+.+
T Consensus 10 mkI~VIG~G~vG~~~A~~La----------~~g~g~~V~~~D~~~~~v~~l~~g~ 54 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIA----------HKCPHITVTVVDMNTAKIAEWNSDK 54 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HHCTTSEEEEECSCHHHHHHHTSSS
T ss_pred CEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEECCHHHHHHHHCCC
Confidence 47999999999999999997 44 799999999999999987643
|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.57 Score=41.20 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=62.4
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcC-CCEEEecCCCHHHHHhcCC--CCCcEEEEEcCC-HHHHHHHHHHHHHhCCCC
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLG-FPILYGDASRPAVLLSAGI--TSPKAVMIMYTD-KKRTIEAVQRLRLAFPAI 505 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~-~~vi~GD~~~~~~L~~a~i--~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~ 505 (663)
..+.+|.++|.|+...+.+. +.+ +.+..- .+..+.+....- ...|.+++-..- +..-...+..+|+.+|++
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~-~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRT-VGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEE-CCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEe-CCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 34567778887776654433 345 555542 233334443321 567888776653 345667788889999998
Q ss_pred cEEEEecC--hhhHHHHHHcCCCeEEcCc
Q 006034 506 PIYARAQD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 506 ~iia~~~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
+++..... .+......++|++.++...
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp 125 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWP 125 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESS
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCC
Confidence 88877654 4556667789998766554
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.04 Score=56.87 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=52.4
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHh-cCCCEEEecCCCH-HHHHhcCCCCCcE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-LGFPILYGDASRP-AVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~-~~L~~a~i~~a~~ 480 (663)
+++|.|. |-+|+.+++.|. +. |++|++++++++..+.+.+ .+..++.||.+|+ +.++++ ++++|.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~----------~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~d~ 70 (345)
T 2bll_A 2 RVLILGVNGFIGNHLTERLL----------REDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH-VKKCDV 70 (345)
T ss_dssp EEEEETCSSHHHHHHHHHHH----------HSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHH-HHHCSE
T ss_pred eEEEECCCcHHHHHHHHHHH----------HhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhh-ccCCCE
Confidence 5899987 999999999997 44 8999999999877554332 4677899999984 455443 346788
Q ss_pred EEEE
Q 006034 481 VMIM 484 (663)
Q Consensus 481 vv~~ 484 (663)
||-+
T Consensus 71 vih~ 74 (345)
T 2bll_A 71 VLPL 74 (345)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7754
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=92.02 E-value=0.18 Score=45.28 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=65.2
Q ss_pred CCCcEEEEcC----CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGF----GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~----g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
..++|.|+|. |++|..+++.|. +.|+++..++.+.+.+ .|.++ +. + ++++ .+.
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~----------~~G~~V~~vnp~~~~i-----~G~~~-~~---s---~~el-~~~ 69 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLL----------SKGFEVLPVNPNYDEI-----EGLKC-YR---S---VREL-PKD 69 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHH----------HTTCEEEEECTTCSEE-----TTEEC-BS---S---GGGS-CTT
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHH----------HCCCEEEEeCCCCCeE-----CCeee-cC---C---HHHh-CCC
Confidence 3567999999 999999999997 6788755555443221 12221 11 1 2222 136
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHcCCCeEEcCch
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~--~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+|.+++++++ +.-..++..+.+.+++ .++.... +++-.+..++.|+. ++.|+-
T Consensus 70 vDlvii~vp~-~~v~~v~~~~~~~g~~-~i~~~~~~~~~~l~~~a~~~Gi~-~igpnc 124 (138)
T 1y81_A 70 VDVIVFVVPP-KVGLQVAKEAVEAGFK-KLWFQPGAESEEIRRFLEKAGVE-YSFGRC 124 (138)
T ss_dssp CCEEEECSCH-HHHHHHHHHHHHTTCC-EEEECTTSCCHHHHHHHHHHTCE-EECSCC
T ss_pred CCEEEEEeCH-HHHHHHHHHHHHcCCC-EEEEcCccHHHHHHHHHHHCCCE-EEcCCc
Confidence 8999999884 5555555556666655 3443222 44556667777875 667763
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.068 Score=55.97 Aligned_cols=70 Identities=16% Similarity=0.333 Sum_probs=57.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHh-cCCCEEEecCC-CHHHHHhcCCCCCc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-LGFPILYGDAS-RPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~-~~~~L~~a~i~~a~ 479 (663)
++|+|.|. |-+|+.+++.|. +. |++|+++++++++.+.+.+ .+..++.||.+ |++.++++ ++++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~----------~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~-~~~~d 93 (372)
T 3slg_A 25 KKVLILGVNGFIGHHLSKRIL----------ETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYH-VKKCD 93 (372)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHH-HHHCS
T ss_pred CEEEEECCCChHHHHHHHHHH----------hCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHH-hccCC
Confidence 57999995 999999999997 44 8999999999887666554 67899999999 88888754 24788
Q ss_pred EEEEE
Q 006034 480 AVMIM 484 (663)
Q Consensus 480 ~vv~~ 484 (663)
.||-+
T Consensus 94 ~Vih~ 98 (372)
T 3slg_A 94 VILPL 98 (372)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88753
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.97 Score=45.89 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=75.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHH----HHh----cCC-CEEEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE----SRK----LGF-PILYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~----~~~----~~~-~vi~GD~~~~~~L~~a 473 (663)
++.|+|.|.+|..++..|. ..+. +++++|.|+++++- +.+ ... .-+.+. +|.+
T Consensus 2 kI~ViGaG~vG~~la~~l~----------~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~----- 65 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCL----------LNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG-ADYS----- 65 (294)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE-SCGG-----
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe-CCHH-----
Confidence 5899999999999999996 4555 89999999998651 222 111 123331 2333
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH--HHH-HHcC--CCeEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL--LDL-KKAG--ATDAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~G--ad~vi~p-~ 532 (663)
.+++||.+|++.+. | ..|..+ +..+++.+|+..++. +.||-+. ..+ +..| .++|+-- .
T Consensus 66 a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iiv-vsNPvd~~t~~~~k~~g~p~~rviG~gt 144 (294)
T 1oju_A 66 LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV-VTNPMDVMTYIMWKESGKPRNEVFGMGN 144 (294)
T ss_dssp GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEE-CSSSHHHHHHHHHHHSCCCTTSEEECSH
T ss_pred HhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eCCcchHHHHHHHHhcCCCHHHEeeccc
Confidence 45789988887642 2 345443 344666688855444 4466443 233 3344 3456655 3
Q ss_pred hHHHHHHHHHHHHhcCCCH
Q 006034 533 AETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~ 551 (663)
.+-..++-..+- .++++|
T Consensus 145 ~LD~~R~~~~la-~l~v~~ 162 (294)
T 1oju_A 145 QLDSQRLKERLY-NAGARN 162 (294)
T ss_dssp HHHHHHHHHHHH-HTTCBS
T ss_pred ccHHHHHHHHHH-HhCCCc
Confidence 333344444444 566655
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.18 Score=50.05 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=54.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a 478 (663)
.+|.|+|.|++|..+++.|. +.| ++|.+.|+++++ .+..+ .++. +.+ +++
T Consensus 5 m~i~iiG~G~mG~~~a~~l~----------~~g~~~~~~v~~~~~~~~~------~g~~~----~~~~~~~~-----~~~ 59 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIA----------NANIIKKENLFYYGPSKKN------TTLNY----MSSNEELA-----RHC 59 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHH----------HHTSSCGGGEEEECSSCCS------SSSEE----CSCHHHHH-----HHC
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCCCCCeEEEEeCCccc------CceEE----eCCHHHHH-----hcC
Confidence 36999999999999999997 566 789999999876 23322 1232 333 367
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
|.|++++.++.. ..+...++...++..++.-.+.-..
T Consensus 60 D~vi~~v~~~~~-~~v~~~l~~~l~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 60 DIIVCAVKPDIA-GSVLNNIKPYLSSKLLISICGGLNI 96 (262)
T ss_dssp SEEEECSCTTTH-HHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred CEEEEEeCHHHH-HHHHHHHHHhcCCCEEEEECCCCCH
Confidence 888888886432 2222223332244345555554433
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.11 Score=52.16 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=53.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c-CCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~-~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 30 k~vlVTGas~gIG~aia~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLL----------EAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQAL 99 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHH
Confidence 46788876 789999999998 789999999999987665443 1 355678999998876543
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 100 ~~~~g~iD~lvnnA 113 (276)
T 2b4q_A 100 GELSARLDILVNNA 113 (276)
T ss_dssp HHHCSCCSEEEECC
T ss_pred HHhcCCCCEEEECC
Confidence 123678776654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.16 Score=50.33 Aligned_cols=73 Identities=8% Similarity=-0.044 Sum_probs=53.9
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCC-CCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNT-VGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~-~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|.|. |-+|+.+++.|. + .|++|+++++++++.+...+ ....++.+|.+|++.++++-
T Consensus 4 ~k~vlITGasggIG~~~a~~L~----------~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 73 (276)
T 1wma_A 4 IHVALVTGGNKGIGLAIVRDLC----------RLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR 73 (276)
T ss_dssp CCEEEESSCSSHHHHHHHHHHH----------HHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----------HhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHH
Confidence 356778875 789999999997 6 89999999999887654432 24678899999988776531
Q ss_pred ------CCCCcEEEEEc
Q 006034 475 ------ITSPKAVMIMY 485 (663)
Q Consensus 475 ------i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 74 ~~~~~~~g~id~li~~A 90 (276)
T 1wma_A 74 DFLRKEYGGLDVLVNNA 90 (276)
T ss_dssp HHHHHHHSSEEEEEECC
T ss_pred HHHHHhcCCCCEEEECC
Confidence 12567776543
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=91.94 E-value=1.1 Score=39.80 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=65.1
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEE
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~ii 508 (663)
..+.++.+||.|+...+.+. +.|+.+... .+-.+.++...-...|.+++-..-. ......+..+|+.+|+++++
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF-TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE-SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe-CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 35678999999988765544 356766632 2335566666666789888766532 34566788889989998988
Q ss_pred EEecChh--hHHHHHHcC-CCeEEcC
Q 006034 509 ARAQDMM--HLLDLKKAG-ATDAILE 531 (663)
Q Consensus 509 a~~~~~~--~~~~l~~~G-ad~vi~p 531 (663)
......+ ......+.| ++.++..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~k 109 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLK 109 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEES
T ss_pred EEecCCCHHHHHHHHhccchheeeeC
Confidence 8776554 444555676 8766544
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.16 Score=50.15 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=53.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++.++++
T Consensus 7 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLL----------GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 45777775 789999999998 789999999999988776554 2456788999999876543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~g~id~lv~~A 88 (253)
T 1hxh_A 77 RLGTLNVLVNNA 88 (253)
T ss_dssp HHCSCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 123457666543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.91 E-value=0.18 Score=50.51 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=54.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++|+++++.+...+ .....+.+|.+|++..+++
T Consensus 12 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (271)
T 3tzq_B 12 KVAIITGACGGIGLETSRVLA----------RAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTID 81 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 46788876 679999999998 789999999999988766553 3577889999999876653
Q ss_pred CCCCCcEEEEE
Q 006034 474 GITSPKAVMIM 484 (663)
Q Consensus 474 ~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 82 ~~g~id~lv~n 92 (271)
T 3tzq_B 82 TFGRLDIVDNN 92 (271)
T ss_dssp HHSCCCEEEEC
T ss_pred HcCCCCEEEEC
Confidence 11256766654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.11 Score=54.14 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=55.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~v 481 (663)
.+++.|+|+|++|+.+++.|. ..|.+|++.|++++. +...+.+... ++. +.+ +++|.+
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~-----~~l~~~l-----~~aDvV 208 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAK----------GFNMRILYYSRTRKE-EVERELNAEF-----KPLEDLL-----RESDFV 208 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCH-HHHHHHCCEE-----CCHHHHH-----HHCSEE
T ss_pred CCEEEEEccCHHHHHHHHHHH----------hCCCEEEEECCCcch-hhHhhcCccc-----CCHHHHH-----hhCCEE
Confidence 357999999999999999997 789999999999887 5454445422 233 334 367888
Q ss_pred EEEcCCHHH--HHHHHHHHHHhCCC
Q 006034 482 MIMYTDKKR--TIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~--n~~~~~~~r~~~~~ 504 (663)
+++++.+.. ++.-....+.+.|+
T Consensus 209 il~vp~~~~t~~~i~~~~~~~mk~~ 233 (334)
T 2dbq_A 209 VLAVPLTRETYHLINEERLKLMKKT 233 (334)
T ss_dssp EECCCCCTTTTTCBCHHHHHHSCTT
T ss_pred EECCCCChHHHHhhCHHHHhcCCCC
Confidence 888876542 22212334455555
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.08 Score=55.73 Aligned_cols=72 Identities=21% Similarity=0.113 Sum_probs=56.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHH-HHHH-hcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVV-KESR-KLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~-~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.+|+|.|. |-+|+.+++.|. +.| ++|++++++++.. +.+. ..+..++.||.+|++.++++ ++++|
T Consensus 33 ~~ilVtGatG~iG~~l~~~L~----------~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 101 (377)
T 2q1s_A 33 TNVMVVGGAGFVGSNLVKRLL----------ELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASL-QDEYD 101 (377)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHC-CSCCS
T ss_pred CEEEEECCccHHHHHHHHHHH----------HcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHH-hhCCC
Confidence 46999996 999999999997 678 9999999886542 1121 23567889999999998875 45889
Q ss_pred EEEEEcC
Q 006034 480 AVMIMYT 486 (663)
Q Consensus 480 ~vv~~~~ 486 (663)
.||-+..
T Consensus 102 ~Vih~A~ 108 (377)
T 2q1s_A 102 YVFHLAT 108 (377)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 8886654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.19 Score=50.52 Aligned_cols=73 Identities=15% Similarity=0.033 Sum_probs=54.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++|++++..+...+ .....+.+|.+|++..+++
T Consensus 28 k~vlVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFA----------KNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTA 97 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 45777776 679999999998 789999999999998777654 2456788999999876543
Q ss_pred CCCCCcEEEEEcC
Q 006034 474 GITSPKAVMIMYT 486 (663)
Q Consensus 474 ~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 98 ~~g~iD~lv~nAg 110 (277)
T 4dqx_A 98 KWGRVDVLVNNAG 110 (277)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 1125677765543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.18 Score=51.47 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a~-- 474 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++.++++-
T Consensus 32 k~vlVTGas~gIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFA----------RRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46888886 668999999998 789999999999988766543 2 3567889999998776531
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 102 ~~~~~g~id~lvnnA 116 (301)
T 3tjr_A 102 AFRLLGGVDVVFSNA 116 (301)
T ss_dssp HHHHHSSCSEEEECC
T ss_pred HHHhCCCCCEEEECC
Confidence 13567776554
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=91.86 E-value=0.65 Score=47.90 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=69.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CC-EEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WP-FVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~-vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
++.|+|+|.+|+..++.|.+ ..+ .+ +-+.|+|+++.+.+.+ .+.+-.+.|. ++.|++ .+.|+
T Consensus 4 rigiiG~G~ig~~~~~~l~~---------~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~--~~ll~~---~~vD~ 69 (334)
T 3ohs_X 4 RWGIVSVGLISSDFTAVLQT---------LPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSY--EELAKD---PNVEV 69 (334)
T ss_dssp EEEEECCSHHHHHHHHHHTT---------SCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSH--HHHHHC---TTCCE
T ss_pred EEEEECchHHHHHHHHHHHh---------CCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCH--HHHhcC---CCCCE
Confidence 68999999999999999962 232 34 4456999999887765 4654344332 344543 57899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCeEE
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 529 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~vi 529 (663)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|.-..+
T Consensus 70 V~i~tp~~~H-~~~~~~al~~G--khVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 122 (334)
T 3ohs_X 70 AYVGTQHPQH-KAAVMLCLAAG--KAVLCEKPMGVNAAEVREMVTEARSRGLFLME 122 (334)
T ss_dssp EEECCCGGGH-HHHHHHHHHTT--CEEEEESSSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCcHHH-HHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 9999988643 44455555554 367764 4454444433 555665444
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.46 Score=49.70 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=63.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh-------------------HHHHH----HHhc--C
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVKE----SRKL--G 456 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~-------------------~~~~~----~~~~--~ 456 (663)
+.||+|+|.|..|..+++.|. ..|. ++.++|.|. .+++. +++. .
T Consensus 118 ~~~VlvvG~GglGs~va~~La----------~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 187 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILA----------TSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE 187 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred CCeEEEECCCHHHHHHHHHHH----------hCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC
Confidence 568999999999999999997 5665 699999884 12322 3321 2
Q ss_pred --CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHH-HHHHHHHHHHHhCC
Q 006034 457 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFP 503 (663)
Q Consensus 457 --~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~-~n~~~~~~~r~~~~ 503 (663)
...+..+.++.+.+.+ ++++|.||.++++.+ ....+...+++.+.
T Consensus 188 v~v~~~~~~i~~~~~~~~--~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~ 235 (353)
T 3h5n_A 188 ISVSEIALNINDYTDLHK--VPEADIWVVSADHPFNLINWVNKYCVRANQ 235 (353)
T ss_dssp SEEEEEECCCCSGGGGGG--SCCCSEEEECCCCSTTHHHHHHHHHHHTTC
T ss_pred CeEEEeecccCchhhhhH--hccCCEEEEecCChHHHHHHHHHHHHHhCC
Confidence 3345566666554555 899999888887766 66666677787763
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.079 Score=53.44 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=64.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++.|+|.|.+|+.+++.|. +.|.+|.+.|+++++.+.+.+. +.+ +..+ .+++ -++++|.+|.
T Consensus 130 ~~v~iiGaG~~g~aia~~L~----------~~g~~V~v~~r~~~~~~~l~~~-~g~---~~~~--~~~~-~~~~aDiVi~ 192 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALV----------KEGAKVFLWNRTKEKAIKLAQK-FPL---EVVN--SPEE-VIDKVQVIVN 192 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSSHHHHHHHTTT-SCE---EECS--CGGG-TGGGCSEEEE
T ss_pred CEEEEECchHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHH-cCC---eeeh--hHHh-hhcCCCEEEE
Confidence 47999999999999999997 5677999999999998887653 122 1121 1111 2468999999
Q ss_pred EcCCHHH-HHHHHHHHHHhCCCCcEEEEec-ChhhHHHHHHcCCC
Q 006034 484 MYTDKKR-TIEAVQRLRLAFPAIPIYARAQ-DMMHLLDLKKAGAT 526 (663)
Q Consensus 484 ~~~dd~~-n~~~~~~~r~~~~~~~iia~~~-~~~~~~~l~~~Gad 526 (663)
+++.... +..-......+.++.-++-... ..+..+..++.|+.
T Consensus 193 atp~~~~~~~~~~i~~~~l~~g~~viDv~~~~t~ll~~a~~~g~~ 237 (275)
T 2hk9_A 193 TTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKETKLLKKAKEKGAK 237 (275)
T ss_dssp CSSTTSSTTCCCSSCGGGCCTTSEEEESSSSCCHHHHHHHHTTCE
T ss_pred eCCCCCCCCCCCCCCHHHcCCCCEEEEcCCChHHHHHHHHHCcCE
Confidence 9987531 1000001122344423333332 22334556677874
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.83 E-value=0.23 Score=50.05 Aligned_cols=72 Identities=10% Similarity=0.096 Sum_probs=54.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ . ...++.+|.+|++.++++
T Consensus 45 k~vlITGasggIG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 114 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLA----------KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINK 114 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHT----------TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHH
Confidence 46788875 789999999997 789999999999887655432 2 345688999999887654
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 115 ~~~~~~~id~li~~A 129 (285)
T 2c07_A 115 ILTEHKNVDILVNNA 129 (285)
T ss_dssp HHHHCSCCCEEEECC
T ss_pred HHHhcCCCCEEEECC
Confidence 224678777654
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=91.82 E-value=0.13 Score=54.13 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~ 479 (663)
..+++.|+|+|++|+.+++.|. ..|.+ |.+.|++++..+...+.|... ..+. +.+ +++|
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~----------~~G~~~V~~~d~~~~~~~~~~~~g~~~----~~~l~ell-----~~aD 223 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLV----------PFNPKELLYYDYQALPKDAEEKVGARR----VENIEELV-----AQAD 223 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHG----------GGCCSEEEEECSSCCCHHHHHHTTEEE----CSSHHHHH-----HTCS
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------hCCCcEEEEECCCccchhHHHhcCcEe----cCCHHHHH-----hcCC
Confidence 3457999999999999999997 78998 999998876655555544321 1233 333 3688
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.|+.+.+..+
T Consensus 224 vV~l~~P~t~ 233 (364)
T 2j6i_A 224 IVTVNAPLHA 233 (364)
T ss_dssp EEEECCCCST
T ss_pred EEEECCCCCh
Confidence 8888887643
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.18 Score=51.05 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. +.|++|+++++++++.+...+ ....++.+|.+|++.++++
T Consensus 27 k~vlITGasggiG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 96 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLS----------SLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 96 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHH
Confidence 46788876 789999999998 789999999999987655432 2366789999999876543
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 97 ~~~~~~g~id~li~~Ag 113 (302)
T 1w6u_A 97 ELIKVAGHPNIVINNAA 113 (302)
T ss_dssp HHHHHTCSCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1235687776543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.17 Score=52.05 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=55.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++.++++
T Consensus 9 k~vlVTGas~gIG~~la~~l~----------~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~ 78 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLL----------NQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAA 78 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHH
Confidence 46888886 789999999998 789999999999988765543 1 467789999999877654
Q ss_pred -----CCCCCcEEEEEcC
Q 006034 474 -----GITSPKAVMIMYT 486 (663)
Q Consensus 474 -----~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 79 ~~~~~~~g~id~lv~nAg 96 (319)
T 3ioy_A 79 DEVEARFGPVSILCNNAG 96 (319)
T ss_dssp HHHHHHTCCEEEEEECCC
T ss_pred HHHHHhCCCCCEEEECCC
Confidence 1235677766554
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.18 Score=51.14 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHHHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~~L~ 471 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++.++
T Consensus 19 k~vlVTGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 19 QVAIVTGGATGIGKAIVKELL----------ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 56788875 789999999998 789999999999887655432 13567889999998776
Q ss_pred hcC------CCCCcEEEEEcC
Q 006034 472 SAG------ITSPKAVMIMYT 486 (663)
Q Consensus 472 ~a~------i~~a~~vv~~~~ 486 (663)
++- ..+.|.+|-..+
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 531 135787776543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.14 Score=50.53 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=54.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+...+ .....+.+|.+|++-.+++
T Consensus 7 k~vlVTGas~gIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLA----------ADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46788876 679999999998 789999999999998776654 3456778999999877653
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~g~id~lv~nA 88 (247)
T 3rwb_A 77 LTGGIDILVNNA 88 (247)
T ss_dssp HHSCCSEEEECC
T ss_pred HCCCCCEEEECC
Confidence 112567776544
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.15 Score=51.12 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-.+++
T Consensus 29 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALA----------GAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 45667676 679999999998 789999999999998777654 3578899999999877653
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 99 ~~g~iD~lVnnA 110 (272)
T 4dyv_A 99 KFGRVDVLFNNA 110 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 112567666543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.78 E-value=0.19 Score=50.34 Aligned_cols=72 Identities=10% Similarity=-0.021 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++-++++
T Consensus 22 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 91 (273)
T 1ae1_A 22 TTALVTGGSKGIGYAIVEELA----------GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQT 91 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 46788875 789999999998 789999999999987655432 2 356688999999877543
Q ss_pred ---CC-CCCcEEEEEc
Q 006034 474 ---GI-TSPKAVMIMY 485 (663)
Q Consensus 474 ---~i-~~a~~vv~~~ 485 (663)
.. .+.|.+|-..
T Consensus 92 ~~~~~~g~id~lv~nA 107 (273)
T 1ae1_A 92 VAHVFDGKLNILVNNA 107 (273)
T ss_dssp HHHHTTSCCCEEEECC
T ss_pred HHHHcCCCCcEEEECC
Confidence 12 4677766554
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.78 E-value=0.44 Score=44.94 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH---Hh-cCCC
Q 006034 402 GSEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL---LS-AGIT 476 (663)
Q Consensus 402 ~~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L---~~-a~i~ 476 (663)
..++++|.| .|.+|+.+++.+. ..|.+|+++|+++++.+.+++.+...+. |.++++.. .+ .+-.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~----------~~G~~V~~~~~~~~~~~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAK----------MIGARIYTTAGSDAKREMLSRLGVEYVG-DSRSVDFADEILELTDGY 106 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHTTTC
T ss_pred CCCEEEEeeCCChHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHcCCCEEe-eCCcHHHHHHHHHHhCCC
Confidence 346799999 5999999999997 6789999999999998888776655433 66654432 22 2224
Q ss_pred CCcEEEEEcCC
Q 006034 477 SPKAVMIMYTD 487 (663)
Q Consensus 477 ~a~~vv~~~~d 487 (663)
..|.++-+.+.
T Consensus 107 ~~D~vi~~~g~ 117 (198)
T 1pqw_A 107 GVDVVLNSLAG 117 (198)
T ss_dssp CEEEEEECCCT
T ss_pred CCeEEEECCch
Confidence 68988877664
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.17 Score=50.65 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=52.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++.++++
T Consensus 22 k~~lVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 91 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLA----------EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 91 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 45777775 789999999998 789999999999887654432 1345678999999876543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 92 ~~~~~~g~iD~lvnnA 107 (267)
T 1vl8_A 92 AVKEKFGKLDTVVNAA 107 (267)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 123567776543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.058 Score=57.29 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi 460 (663)
...+++|+|+|++|+.+++.+. ..|.+|++.|.++++.+.+.+.|..++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~----------~~Ga~V~~~d~~~~~~~~~~~~Ga~~~ 219 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAK----------RLGAVVMATDVRAATKEQVESLGGKFI 219 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence 4568999999999999999997 788899999999998888877665543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.71 E-value=0.19 Score=50.07 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALL----------LKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTF 77 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHH
Confidence 46888886 789999999998 789999999999887654322 1356789999999877653
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~~~g~id~lv~~A 94 (267)
T 2gdz_A 78 RKVVDHFGRLDILVNNA 94 (267)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 123568776654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.14 Score=51.09 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCCcEEEE-c-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcC--CCEEEecCCCHHHHHh
Q 006034 401 EGSEPVVIV-G-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 401 ~~~~~viI~-G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~--~~vi~GD~~~~~~L~~ 472 (663)
+.+++++++ | .+-+|+.+++.|. ++|.+|++.|+|+++.++.. +.+ ...+.+|.+|++-.++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la----------~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~ 75 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLA----------AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEA 75 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHH----------HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHH
Confidence 456666555 4 4669999999998 89999999999998765543 344 4456799999887654
Q ss_pred c------CCCCCcEEEEE
Q 006034 473 A------GITSPKAVMIM 484 (663)
Q Consensus 473 a------~i~~a~~vv~~ 484 (663)
+ ...+-|.+|-.
T Consensus 76 ~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 76 AFSKLDAEGIHVDILINN 93 (255)
T ss_dssp HHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHHHCCCCcEEEEC
Confidence 2 34466766543
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.84 Score=39.85 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=63.8
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcC--CCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEE
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAG--ITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~--i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia 509 (663)
.++.++|.|+...+.+. +.++.+...+ +..+.++... -.+.|.+++-..- +......+..+|+.+|+++++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~-~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTAS-SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeC-CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 56889998887655444 3566665443 2344444433 4578888777653 2345667888899999989888
Q ss_pred EecCh--hhHHHHHHcCCCeEEcCc
Q 006034 510 RAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 510 ~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
...+. +......+.|++.++...
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp 107 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKP 107 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESS
T ss_pred EECCCCHHHHHHHHHhCcceeEeCC
Confidence 77654 446677889999766554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.13 Score=51.13 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=54.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++.++++
T Consensus 30 k~vlITGas~gIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLG----------SLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 46777775 789999999998 789999999999988766543 2 356788999999877653
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 100 ~~~~~g~id~lv~~A 114 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNA 114 (262)
T ss_dssp HHHHHSCCSEEEECC
T ss_pred HHHhcCCCCEEEECC
Confidence 113567776554
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.065 Score=53.02 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CCCCCcE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GITSPKA 480 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i~~a~~ 480 (663)
+.++|-|. +-+|+.+++.|. ++|.+|++.|+|++..+...+.....+..|.+|++..+++ ...+-|.
T Consensus 12 K~alVTGas~GIG~aia~~la----------~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 81 (242)
T 4b79_A 12 QQVLVTGGSSGIGAAIAMQFA----------ELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDV 81 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 45666665 569999999998 8999999999999887655555677888999998876553 3456676
Q ss_pred EEE
Q 006034 481 VMI 483 (663)
Q Consensus 481 vv~ 483 (663)
+|-
T Consensus 82 LVN 84 (242)
T 4b79_A 82 LVN 84 (242)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.65 E-value=0.16 Score=49.92 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=54.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++++++++..+.+.+ . ...++.+|.+|++.++++
T Consensus 6 k~vlITGas~gIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALA----------SKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAE 75 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 46777776 678999999998 789999999999988665543 2 356788999999876643
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~~~~~~id~li~~A 90 (247)
T 3lyl_A 76 IKAENLAIDILVNNA 90 (247)
T ss_dssp HHHTTCCCSEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 233568776654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.65 E-value=0.24 Score=49.25 Aligned_cols=72 Identities=14% Similarity=0.043 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++..+++
T Consensus 11 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (262)
T 3pk0_A 11 RSVVVTGGTKGIGRGIATVFA----------RAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAG 80 (262)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHH
Confidence 45666665 779999999998 789999999999988665443 2356789999999877653
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 81 ~~~~~~g~id~lvnnA 96 (262)
T 3pk0_A 81 RAVEEFGGIDVVCANA 96 (262)
T ss_dssp HHHHHHSCCSEEEECC
T ss_pred HHHHHhCCCCEEEECC
Confidence 123567776554
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y | Back alignment and structure |
|---|
Probab=91.64 E-value=0.85 Score=38.34 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
.++.++|.|+...+.++ +.|+.++.--.+..+.++...-.+.|.+++-.+-+ ..-...+...|+.+|+.+++...
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCS 82 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEe
Confidence 46888998887654443 35776543222334555544445678887766543 33456777888888888887776
Q ss_pred cC--hhhHHHHHHcCCCeEEcCc
Q 006034 512 QD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 512 ~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
.. .+......+.|++..+.-.
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP 105 (120)
T 1tmy_A 83 AMGQQAMVIEAIKAGAKDFIVKP 105 (120)
T ss_dssp CTTCHHHHHHHHHTTCCEEEESS
T ss_pred CCCCHHHHHHHHHhCcceeEeCC
Confidence 54 4455667789999776543
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.11 Score=55.62 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=53.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH---HHH---------------HhcCCCEEEec
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KES---------------RKLGFPILYGD 463 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~---~~~---------------~~~~~~vi~GD 463 (663)
.++|+|.|. |-+|+.+++.|. +.|++|++++++++.. +.+ ...+..++.||
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~D 138 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEALQ----------GYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGD 138 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHHT----------TTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEEC
T ss_pred CCEEEEecCCcHHHHHHHHHHH----------cCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCC
Confidence 457999996 999999999997 7899999999988722 111 12568899999
Q ss_pred CCCHHHHHhcCCCCCcEEEEEc
Q 006034 464 ASRPAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 464 ~~~~~~L~~a~i~~a~~vv~~~ 485 (663)
.+|++.++ ...+.|.|+-+.
T Consensus 139 l~d~~~l~--~~~~~d~Vih~A 158 (427)
T 4f6c_A 139 FECMDDVV--LPENMDTIIHAG 158 (427)
T ss_dssp C---CCCC--CSSCCSEEEECC
T ss_pred CCCcccCC--CcCCCCEEEECC
Confidence 99988887 667899887654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.2 Score=50.60 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=53.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. +-+|+.+++.|. +.|++|++++++++..+...+ . ...++.+|.+|++-.+++
T Consensus 29 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 98 (283)
T 3v8b_A 29 PVALITGAGSGIGRATALALA----------ADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRD 98 (283)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46778876 679999999998 789999999999988766553 1 355788999999766543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 99 ~~~~~g~iD~lVnnA 113 (283)
T 3v8b_A 99 LVLKFGHLDIVVANA 113 (283)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 113567666543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.15 Score=50.67 Aligned_cols=72 Identities=13% Similarity=0.025 Sum_probs=53.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a~-- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++-
T Consensus 15 k~vlITGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (266)
T 1xq1_A 15 KTVLVTGGTKGIGHAIVEEFA----------GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQT 84 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHH
Confidence 45777765 789999999998 789999999999887655432 2 3567889999998776541
Q ss_pred C-----CCCcEEEEEc
Q 006034 475 I-----TSPKAVMIMY 485 (663)
Q Consensus 475 i-----~~a~~vv~~~ 485 (663)
+ .+.|.+|-..
T Consensus 85 ~~~~~~~~id~li~~A 100 (266)
T 1xq1_A 85 VSSMFGGKLDILINNL 100 (266)
T ss_dssp HHHHHTTCCSEEEEEC
T ss_pred HHHHhCCCCcEEEECC
Confidence 1 4678777654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.1 Score=51.37 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=53.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHHh----c--CCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRK----L--GFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a~- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++ +++.+.+.+ . ...++.+|.+|++.++++=
T Consensus 8 k~vlVTGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (258)
T 3afn_B 8 KRVLITGSSQGIGLATARLFA----------RAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVD 77 (258)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 45777775 889999999998 789999999998 666554332 2 3567899999998776541
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 78 ~~~~~~g~id~vi~~A 93 (258)
T 3afn_B 78 EFVAKFGGIDVLINNA 93 (258)
T ss_dssp HHHHHHSSCSEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 12678777654
|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=91.58 E-value=1.9 Score=37.41 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=67.3
Q ss_pred CCCCEEEEeCChHHHHHHH----h-cCCCEEEecCCCHHHHHhcCC-CCCcEEEEEcCC--HHHHHHHHHHHHH--hCCC
Q 006034 435 VGWPFVAFDLNPSVVKESR----K-LGFPILYGDASRPAVLLSAGI-TSPKAVMIMYTD--KKRTIEAVQRLRL--AFPA 504 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~----~-~~~~vi~GD~~~~~~L~~a~i-~~a~~vv~~~~d--d~~n~~~~~~~r~--~~~~ 504 (663)
...++.++|.|+...+.++ + .++.+..- .+-.+.++...- .+.|.+++-.+- +..-...+..+|+ .+++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~-~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~ 81 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEV-ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTAN 81 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEE-CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEE-CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCC
Confidence 3467899999988755443 4 57777633 233456666555 778988776553 4566778888998 7888
Q ss_pred CcEEEEecC--hhhHHHHHHcCCCeEEcCc
Q 006034 505 IPIYARAQD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 505 ~~iia~~~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
++++..... .+......+.|++.++.-.
T Consensus 82 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP 111 (140)
T 3lua_A 82 TPVIIATKSDNPGYRHAALKFKVSDYILKP 111 (140)
T ss_dssp CCEEEEESCCCHHHHHHHHHSCCSEEEESS
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 898877754 4666777899999876543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.57 E-value=0.13 Score=52.31 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c-----CCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-----GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~-----~~~vi~GD~~~~~~L~~a 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 27 k~vlVTGas~gIG~aia~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~ 96 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFA----------KEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDI 96 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHH
Confidence 45666665 789999999998 789999999999987655432 2 356788999999876543
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 97 ~~~~~~~~g~iD~lvnnA 114 (297)
T 1xhl_A 97 INTTLAKFGKIDILVNNA 114 (297)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 123567766543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.56 E-value=0.36 Score=50.76 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=59.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |..+++..++.. +.+|.+
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak----------~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~-~g~Dvv 261 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAH----------AMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAHL-KSFDFI 261 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTTT-TCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCcEEe-ccccHHHHHHhh-cCCCEE
Confidence 3468999999999999999886 6788999999999999988887766443 566666666554 678988
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+-+++.+
T Consensus 262 id~~g~~ 268 (369)
T 1uuf_A 262 LNTVAAP 268 (369)
T ss_dssp EECCSSC
T ss_pred EECCCCH
Confidence 8887754
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.56 Score=51.22 Aligned_cols=41 Identities=20% Similarity=0.477 Sum_probs=37.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 454 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~ 454 (663)
++|.|+|.|.+|..+|+.|. +.|++|++.|.|++.++.+.+
T Consensus 6 ~kVgVIGaG~MG~~IA~~la----------~aG~~V~l~D~~~e~l~~~~~ 46 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAA----------SHGHQVLLYDISAEALTRAID 46 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEECSCHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHH
Confidence 57999999999999999998 789999999999999887653
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.16 Score=53.47 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=49.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-------CCEEEEeCChH-----HHHHHHhcCCCE-----------E
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-------WPFVAFDLNPS-----VVKESRKLGFPI-----------L 460 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-------~~vvvid~d~~-----~~~~~~~~~~~v-----------i 460 (663)
.+|.|+|.|.+|..++..|. +.| ++|.++|++++ +.+.+.+.+... +
T Consensus 22 ~kI~iIGaG~mG~alA~~L~----------~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i 91 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVG----------TNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNI 91 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHH----------HHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTE
T ss_pred CEEEEECcCHHHHHHHHHHH----------HcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCe
Confidence 46999999999999999997 567 89999999998 887776532110 1
Q ss_pred EecCCCH-HHHHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRP-AVLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~-~~L~~a~i~~a~~vv~~~~dd 488 (663)
... +|. +. ++++|.|++++.+.
T Consensus 92 ~~~-~~~~ea-----~~~aDvVilav~~~ 114 (375)
T 1yj8_A 92 VAH-SDLASV-----INDADLLIFIVPCQ 114 (375)
T ss_dssp EEE-SSTHHH-----HTTCSEEEECCCHH
T ss_pred EEE-CCHHHH-----HcCCCEEEEcCCHH
Confidence 111 122 22 35789999999863
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.027 Score=56.21 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++++|.|. |.+|+.+++.|. +.|++|++++++++... ..+..++.+|.+|++.++++ +++.|.||
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi 68 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLG----------TLAHEVRLSDIVDLGAA---EAHEEIVACDLADAQAVHDL-VKDCDGII 68 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGG----------GTEEEEEECCSSCCCCC---CTTEEECCCCTTCHHHHHHH-HTTCSEEE
T ss_pred ceEEEECCCCHHHHHHHHHHH----------hCCCEEEEEeCCCcccc---CCCccEEEccCCCHHHHHHH-HcCCCEEE
Confidence 36899997 999999999997 67899999999876321 13567888999999988765 45689887
Q ss_pred EEc
Q 006034 483 IMY 485 (663)
Q Consensus 483 ~~~ 485 (663)
-+.
T Consensus 69 ~~a 71 (267)
T 3ay3_A 69 HLG 71 (267)
T ss_dssp ECC
T ss_pred ECC
Confidence 664
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.16 Score=50.27 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=51.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~--~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+... +.+ ...+.+|.+|++.++++
T Consensus 15 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (260)
T 2zat_A 15 KVALVTASTDGIGLAIARRLA----------QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAM 84 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 45777775 789999999998 78999999999988765433 223 45678999998876543
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 85 ~~~~~g~iD~lv~~ 98 (260)
T 2zat_A 85 AVNLHGGVDILVSN 98 (260)
T ss_dssp HHHHHSCCCEEEEC
T ss_pred HHHHcCCCCEEEEC
Confidence 11356766654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.27 Score=49.35 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+...+ .....+.+|.+|++-.+++
T Consensus 28 k~~lVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 97 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFM----------RHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVD 97 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46777776 569999999998 789999999999887554432 2456788999999766543
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 98 ~~~~~~g~id~lv~nAg 114 (277)
T 4fc7_A 98 QALKEFGRIDILINCAA 114 (277)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCc
Confidence 1236687765543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.14 Score=51.30 Aligned_cols=72 Identities=7% Similarity=0.012 Sum_probs=55.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhcC-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a~----- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+.+.+ ....++.+|.+|++.++++-
T Consensus 6 k~vlVTGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAV----------AAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLA 75 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 56778776 789999999998 789999999999988777654 35678899999998776531
Q ss_pred -CCCCcEEEEEc
Q 006034 475 -ITSPKAVMIMY 485 (663)
Q Consensus 475 -i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 76 ~~g~id~lv~~A 87 (281)
T 3m1a_A 76 RYGRVDVLVNNA 87 (281)
T ss_dssp HHSCCSEEEECC
T ss_pred hCCCCCEEEECC
Confidence 12567666544
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=91.49 E-value=0.25 Score=48.72 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=53.6
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecC--CCHHHHHh
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDA--SRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~--~~~~~L~~ 472 (663)
.+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++..|. +|++..++
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 81 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYA----------RYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQ 81 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHH
Confidence 346777876 678999999998 789999999999988665543 1567889999 88876543
Q ss_pred c------CCCCCcEEEEEc
Q 006034 473 A------GITSPKAVMIMY 485 (663)
Q Consensus 473 a------~i~~a~~vv~~~ 485 (663)
+ ...+.|.+|-..
T Consensus 82 ~~~~~~~~~g~id~lv~nA 100 (252)
T 3f1l_A 82 LAQRIAVNYPRLDGVLHNA 100 (252)
T ss_dssp HHHHHHHHCSCCSEEEECC
T ss_pred HHHHHHHhCCCCCEEEECC
Confidence 2 223667766543
|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=1.8 Score=36.66 Aligned_cols=96 Identities=20% Similarity=0.090 Sum_probs=64.2
Q ss_pred CCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEE
Q 006034 436 GWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 436 ~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+.++.++|.|+...+.++ +.++.+... .+-.+.++...-.+.|.+++-.+-. ..-...+..+|+.+|+++++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~-~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMH-QSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI 81 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEe-CCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 357899999988755443 357766543 3345566665556788777765432 3345677788888888888877
Q ss_pred ecCh--hhHHHHHHcCCCeEEcCc
Q 006034 511 AQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 511 ~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
.... +......+.|++..+.-.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~Kp 105 (126)
T 1dbw_A 82 TGHGDVPMAVEAMKAGAVDFIEKP 105 (126)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESS
T ss_pred ECCCCHHHHHHHHHhCHHHheeCC
Confidence 6543 456677889998876543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=91.49 E-value=0.24 Score=50.93 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=67.8
Q ss_pred cEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|+|+|++|+ ..++.|.+ ..+.++++.|.|+++.+.+.+ .+....+.| +.+.| . .++|+|+
T Consensus 4 ~igiIG~G~ig~~~~~~~l~~---------~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~--~~~~l-~---~~~D~V~ 68 (323)
T 1xea_A 4 KIAMIGLGDIAQKAYLPVLAQ---------WPDIELVLCTRNPKVLGTLATRYRVSATCTD--YRDVL-Q---YGVDAVM 68 (323)
T ss_dssp EEEEECCCHHHHHTHHHHHTT---------STTEEEEEECSCHHHHHHHHHHTTCCCCCSS--TTGGG-G---GCCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHh---------CCCceEEEEeCCHHHHHHHHHHcCCCccccC--HHHHh-h---cCCCEEE
Confidence 689999999998 48898862 457788899999999887765 454321222 23444 2 5789999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhH----HHHHHcCCCeEEc
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHL----LDLKKAGATDAIL 530 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~----~~l~~~Gad~vi~ 530 (663)
++++++.. ...+..+-+.+ .++++. +.+.+.. +..++.|....+.
T Consensus 69 i~tp~~~h-~~~~~~al~~G--k~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 120 (323)
T 1xea_A 69 IHAATDVH-STLAAFFLHLG--IPTFVDKPLAASAQECENLYELAEKHHQPLYVG 120 (323)
T ss_dssp ECSCGGGH-HHHHHHHHHTT--CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCchhH-HHHHHHHHHCC--CeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEe
Confidence 99997643 33333333333 256653 2333333 3345677766553
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=91.48 E-value=0.086 Score=55.17 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=57.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~v 481 (663)
.+++-|+|+|++|+.+++.+.. ..|.+|++.|++++..+...+.+.... .+. +.+ +++|.|
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~---------~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvV 224 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVH---------GLGMKLVYYDVAPADAETEKALGAERV----DSLEELA-----RRSDCV 224 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------TTCCEEEEECSSCCCHHHHHHHTCEEC----SSHHHHH-----HHCSEE
T ss_pred CCEEEEEEECHHHHHHHHHHHH---------hcCCEEEEECCCCcchhhHhhcCcEEe----CCHHHHh-----ccCCEE
Confidence 4579999999999999999951 578899999999876665555454322 233 344 367888
Q ss_pred EEEcCCHHH--HHHHHHHHHHhCCCCcEEE
Q 006034 482 MIMYTDKKR--TIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 482 v~~~~dd~~--n~~~~~~~r~~~~~~~iia 509 (663)
+.+.+.+.. ++.-....+.+.|+ .++.
T Consensus 225 il~vp~~~~t~~li~~~~l~~mk~g-aili 253 (348)
T 2w2k_A 225 SVSVPYMKLTHHLIDEAFFAAMKPG-SRIV 253 (348)
T ss_dssp EECCCCSGGGTTCBCHHHHHHSCTT-EEEE
T ss_pred EEeCCCChHHHHHhhHHHHhcCCCC-CEEE
Confidence 888876533 22222344556555 3443
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.15 Score=50.51 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=48.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++..+++
T Consensus 8 k~~lVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLA----------QEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQ 77 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46788886 678999999998 789999999999987665543 2467889999998876543
Q ss_pred CCCCCcEEEEE
Q 006034 474 GITSPKAVMIM 484 (663)
Q Consensus 474 ~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 78 ~~g~id~lv~n 88 (257)
T 3tpc_A 78 EFGHVHGLVNC 88 (257)
T ss_dssp HHSCCCEEEEC
T ss_pred HcCCCCEEEEC
Confidence 12256766644
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.13 Score=49.66 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChH-HHHHHHhcCCCEEEecCCC-HHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPS-VVKESRKLGFPILYGDASR-PAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~-~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a 478 (663)
...+++|+|.|+.|+.+++.+.. ++.+++ +-++|.||+ +.....-.|.+|+. ..| ++.+++ .+.
T Consensus 83 ~~~~V~IvGaG~lG~aLa~~~~~--------~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~~---~~I 149 (212)
T 3keo_A 83 STTNVMLVGCGNIGRALLHYRFH--------DRNKMQISMAFDLDSNDLVGKTTEDGIPVYG--ISTINDHLID---SDI 149 (212)
T ss_dssp SCEEEEEECCSHHHHHHTTCCCC--------TTSSEEEEEEEECTTSTTTTCBCTTCCBEEE--GGGHHHHC-C---CSC
T ss_pred CCCEEEEECcCHHHHHHHHhhhc--------ccCCeEEEEEEeCCchhccCceeECCeEEeC--HHHHHHHHHH---cCC
Confidence 45689999999999999997531 134555 457799998 65430114777773 333 333333 467
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
|.+++++++... -.++..+.+.+
T Consensus 150 d~vIIAvPs~~a-q~v~d~lv~~G 172 (212)
T 3keo_A 150 ETAILTVPSTEA-QEVADILVKAG 172 (212)
T ss_dssp CEEEECSCGGGH-HHHHHHHHHHT
T ss_pred CEEEEecCchhH-HHHHHHHHHcC
Confidence 889999887543 34555566554
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.23 Score=49.87 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 23 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 92 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLG----------KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAA 92 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 46778875 789999999998 789999999999987654432 2 356788999999876543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 93 ~~~~~g~iD~lv~~A 107 (277)
T 2rhc_B 93 VVERYGPVDVLVNNA 107 (277)
T ss_dssp HHHHTCSCSEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 123678776554
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.42 E-value=0.18 Score=51.88 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=52.6
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh--H---HHHHHHhc-CCCEEEecCCCHHHHHhcCCC-
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--S---VVKESRKL-GFPILYGDASRPAVLLSAGIT- 476 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~--~---~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~- 476 (663)
+++|.|. |-+|+.+++.|. +.|++|++++++. . ..+.+.+. +..++.||.+|++.++++ ++
T Consensus 3 ~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~-~~~ 71 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFAL----------SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRL-ITK 71 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHH-HHH
T ss_pred EEEEeCCCchhHHHHHHHHH----------hCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHH-Hhc
Confidence 5899984 999999999997 7899999998742 1 22333332 478899999999887664 22
Q ss_pred -CCcEEEEEcC
Q 006034 477 -SPKAVMIMYT 486 (663)
Q Consensus 477 -~a~~vv~~~~ 486 (663)
+.|.||-+..
T Consensus 72 ~~~d~vih~A~ 82 (347)
T 1orr_A 72 YMPDSCFHLAG 82 (347)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 4788876654
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.11 Score=53.05 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=50.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHH---HHHHHh-----cCCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSV---VKESRK-----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~---~~~~~~-----~~~~vi~GD~~~~~~L~~a 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++ +++. .+.+.+ .+..++.||.+|++.++++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 71 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLL----------ENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAA 71 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHH
T ss_pred CEEEEECChhHHHHHHHHHHH----------HCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHH
Confidence 46899985 999999999997 78999999887 6532 222221 1346788999999988765
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
++++|.||-+.
T Consensus 72 -~~~~d~vih~A 82 (322)
T 2p4h_X 72 -IEGCVGIFHTA 82 (322)
T ss_dssp -HTTCSEEEECC
T ss_pred -HcCCCEEEEcC
Confidence 45678776543
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.23 Score=52.36 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.+-+|.|||.| +|+.-++.+.+ ...+.+++ +.|+|+++.+...+ .|.++ +.|. +-| +++.|
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~--------~~~~~elvav~~~~~~~a~~~a~~~gv~~-~~~~---~~l----~~~~D 68 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGSARSRELAHAFGIPL-YTSP---EQI----TGMPD 68 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSS--------CCTTEEEEEEECCSSHHHHHHHHHTTCCE-ESSG---GGC----CSCCS
T ss_pred CCCEEEEEehH-HHHHHHHHHHh--------CCCCeEEEEEECCCHHHHHHHHHHhCCCE-ECCH---HHH----hcCCC
Confidence 45689999999 89988888862 12356666 66999999888765 67774 4443 333 24689
Q ss_pred EEEEEcCCHHH---HHHHHHHHHHhCCCCcEEEEec-Chh----hHHHHHHcCCCeEEcCc
Q 006034 480 AVMIMYTDKKR---TIEAVQRLRLAFPAIPIYARAQ-DMM----HLLDLKKAGATDAILEN 532 (663)
Q Consensus 480 ~vv~~~~dd~~---n~~~~~~~r~~~~~~~iia~~~-~~~----~~~~l~~~Gad~vi~p~ 532 (663)
++++++.+... -..++..+-+.+. .|++.=. +.+ -.+..++.|+-..+...
T Consensus 69 ~v~i~~p~~~h~~~~~~~a~~al~aGk--hVl~EKPl~~~ea~~l~~~A~~~g~~~~v~~~ 127 (372)
T 4gmf_A 69 IACIVVRSTVAGGAGTQLARHFLARGV--HVIQEHPLHPDDISSLQTLAQEQGCCYWINTF 127 (372)
T ss_dssp EEEECCC--CTTSHHHHHHHHHHHTTC--EEEEESCCCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred EEEEECCCcccchhHHHHHHHHHHcCC--cEEEecCCCHHHHHHHHHHHHHcCCEEEEcCc
Confidence 89889887532 1455555555542 4544211 222 23334777888777654
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.21 Score=50.53 Aligned_cols=118 Identities=11% Similarity=0.028 Sum_probs=73.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|.|..|+.++..|. +.|. ++.++++++++++.+.+. +..+ +-+-+.+ + ++|.+
T Consensus 122 ~k~vlvlGaGGaaraia~~L~----------~~G~~~v~v~nRt~~ka~~La~~-~~~~-----~~~~l~~--l-~~Div 182 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLK----------DNFAKDIYVVTRNPEKTSEIYGE-FKVI-----SYDELSN--L-KGDVI 182 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHH----------HTTCSEEEEEESCHHHHHHHCTT-SEEE-----EHHHHTT--C-CCSEE
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHh-cCcc-----cHHHHHh--c-cCCEE
Confidence 468999999999999999998 6787 899999999999888763 2222 1233443 5 89988
Q ss_pred EEEcCCH-HHHHH-HHHHHHHhCCCCcEEEEecChhhHH---HHHHcCCCeEEcCchHHHHHHH
Q 006034 482 MIMYTDK-KRTIE-AVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGATDAILENAETSLQLG 540 (663)
Q Consensus 482 v~~~~dd-~~n~~-~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Gad~vi~p~~~~~~~la 540 (663)
|-+|+-- ..+.. .-.....+.++.-++=.+.++...+ ..++.|+. +++-....-.|-+
T Consensus 183 InaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll~~A~~~G~~-~~~Gl~MLv~Qa~ 245 (282)
T 3fbt_A 183 INCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETLFLKYARESGVK-AVNGLYMLVSQAA 245 (282)
T ss_dssp EECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCHHHHHHHHTTCE-EECSHHHHHHHHH
T ss_pred EECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCHHHHHHHHCcCe-EeCcHHHHHHHHH
Confidence 8888531 00100 0011222344534455666765444 44667874 6666543333333
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.2 Score=52.20 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=57.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|.|.|.+|+..++.++ ..|.+|+++|.++++.+.+++.|...+. ++++.+++ .+|.+
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~~~~~~----~~D~v 238 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAV----------AMGAEVSVFARNEHKKQDALSMGVKHFY---TDPKQCKE----ELDFI 238 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHH----------HTTCEEEEECSSSTTHHHHHHTTCSEEE---SSGGGCCS----CEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHhcCCCeec---CCHHHHhc----CCCEE
Confidence 4568999999999999999887 6888999999999999999998877666 55555544 78988
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+-+++.+
T Consensus 239 id~~g~~ 245 (348)
T 3two_A 239 ISTIPTH 245 (348)
T ss_dssp EECCCSC
T ss_pred EECCCcH
Confidence 8777765
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=91.33 E-value=0.18 Score=52.13 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+++.|+|+|++|+.+++.|. ..|.+|++.|+ +++.. ...+.+... - .+-++.+ +++|.
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~----------~~G~~V~~~d~~~~~~~-~~~~~g~~~--~-~~l~ell-----~~aDv 205 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQ----------GFDMDIDYFDTHRASSS-DEASYQATF--H-DSLDSLL-----SVSQF 205 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSCCCHH-HHHHHTCEE--C-SSHHHHH-----HHCSE
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcChh-hhhhcCcEE--c-CCHHHHH-----hhCCE
Confidence 3457999999999999999997 78999999999 88763 344445432 1 1222344 36788
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
|+.+++.++
T Consensus 206 Vil~~p~~~ 214 (320)
T 1gdh_A 206 FSLNAPSTP 214 (320)
T ss_dssp EEECCCCCT
T ss_pred EEEeccCch
Confidence 888888653
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.22 Score=51.40 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=79.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHh---c-------CCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK---L-------GFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~---~-------~~~vi~GD~~~~~~L~~ 472 (663)
.+|.|+|.|.+|..++..|. ..+. +++++|.|+++.+.... + ...+. +. +|.+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la----------~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~-~t-~d~~---- 68 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIV----------QKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS-GS-NTYD---- 68 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE-EE-CCGG----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEE-EC-CCHH----
Confidence 47999999999999999997 5566 79999999987653221 1 12222 21 2222
Q ss_pred cCCCCCcEEEEEcC--------------CH--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHHc-C--CCe
Q 006034 473 AGITSPKAVMIMYT--------------DK--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKKA-G--ATD 527 (663)
Q Consensus 473 a~i~~a~~vv~~~~--------------dd--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l~~~-G--ad~ 527 (663)
.+++||.||.+.+ .| ..|.. ++..+++..|+..++. +.|+.+. ..+.+. | .++
T Consensus 69 -al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNP~~~~t~~~~~~~g~~~~r 146 (322)
T 1t2d_A 69 -DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV-VTNPVDVMVQLLHQHSGVPKNK 146 (322)
T ss_dssp -GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE-CSSSHHHHHHHHHHHHCCCGGG
T ss_pred -HhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-ecCChHHHHHHHHHhcCCChHH
Confidence 3679998888861 11 23332 4455566678865554 4555443 333332 2 445
Q ss_pred EEcC-chHHHHHHHHHHHHhcCCCHHHH
Q 006034 528 AILE-NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 528 vi~p-~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
++-- ......++-..+-+.+++++..+
T Consensus 147 viG~gt~ld~~R~~~~la~~lgv~~~~v 174 (322)
T 1t2d_A 147 IIGLGGVLDTSRLKYYISQKLNVCPRDV 174 (322)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred EEeccCcccHHHHHHHHHHHhCCCHHHe
Confidence 6655 44445555555656666666433
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.36 Score=50.17 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=71.3
Q ss_pred cEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++-|+|+|++|+. .+..+.+ .++.+++ +.|.|+++++.+.+ .+.+-.+.|. +++|++ ++.|+|
T Consensus 25 rigiIG~G~ig~~~~~~~~~~---------~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~--~ell~~---~~iDaV 90 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQD---------AENCVVTAIASRDLTRAREMADRFSVPHAFGSY--EEMLAS---DVIDAV 90 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHH---------CSSEEEEEEECSSHHHHHHHHHHHTCSEEESSH--HHHHHC---SSCSEE
T ss_pred EEEEEcChHHHHHHHHHHHHh---------CCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCH--HHHhcC---CCCCEE
Confidence 7999999999985 5777762 5677776 56999999888765 5666555432 345544 467999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p 531 (663)
+++|+++.. ...+..|-+.+ .+|++. +.+.+..+ ..++.|.-..+..
T Consensus 91 ~I~tP~~~H-~~~~~~al~aG--khVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~ 144 (350)
T 4had_A 91 YIPLPTSQH-IEWSIKAADAG--KHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAY 144 (350)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECC
T ss_pred EEeCCCchh-HHHHHHHHhcC--CEEEEeCCcccchhhHHHHHHHHHHcCCceeEee
Confidence 999998643 34444555554 256663 33433333 3455677655544
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.44 Score=49.92 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=58.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-hcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|.|.|.+|+..++.++ ..|.+|++++.++++.+.+. +.|...+. |..+++.+++.. +.+|.+
T Consensus 188 g~~VlV~GaG~vG~~~~q~a~----------~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~~~-~~~D~v 255 (366)
T 1yqd_A 188 GKHIGIVGLGGLGHVAVKFAK----------AFGSKVTVISTSPSKKEEALKNFGADSFL-VSRDQEQMQAAA-GTLDGI 255 (366)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCGGGHHHHHHTSCCSEEE-ETTCHHHHHHTT-TCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcCCceEE-eccCHHHHHHhh-CCCCEE
Confidence 458999999999999999987 78899999999999988877 66765433 667777676653 578988
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+-+++..
T Consensus 256 id~~g~~ 262 (366)
T 1yqd_A 256 IDTVSAV 262 (366)
T ss_dssp EECCSSC
T ss_pred EECCCcH
Confidence 8887754
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.077 Score=55.54 Aligned_cols=54 Identities=26% Similarity=0.435 Sum_probs=42.2
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
|+|+|.|..|..+|..|. +.|++|+++|++++. +.+..+|++..+.++++.++.
T Consensus 7 ViIVGaGpaGl~~A~~La----------~~G~~V~v~Er~~~~-------~~~~~~g~~l~~~~l~~l~~~ 60 (397)
T 3oz2_A 7 VLVVGGGPGGSTAARYAA----------KYGLKTLMIEKRPEI-------GSPVRCGEGLSKGILNEADIK 60 (397)
T ss_dssp EEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSST-------TCSCCSCCEEETHHHHHTTCC
T ss_pred EEEECcCHHHHHHHHHHH----------HCCCcEEEEeCCCCC-------CCCCceecccCHHHHHHcCCC
Confidence 899999999999999998 799999999987643 333344555556677777664
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=91.29 E-value=1.2 Score=42.00 Aligned_cols=97 Identities=15% Similarity=-0.002 Sum_probs=61.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~ 474 (663)
..++++-+|+|. |.......+ ...+.+|+.+|.|++.++.+++ ....++.||..+. +. .
T Consensus 40 ~~~~vLDiG~G~-G~~~~~la~---------~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~--~ 105 (204)
T 3e05_A 40 DDLVMWDIGAGS-ASVSIEASN---------LMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG--LD--D 105 (204)
T ss_dssp TTCEEEEETCTT-CHHHHHHHH---------HCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT--CT--T
T ss_pred CCCEEEEECCCC-CHHHHHHHH---------HCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh--hh--c
Confidence 456899999985 554444333 1235789999999999877764 2467889998643 21 2
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
.++.|.+++...............+.+.|+-.++....
T Consensus 106 ~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 106 LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence 25789877654433233334455566777756655433
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} | Back alignment and structure |
|---|
Probab=91.29 E-value=1.2 Score=39.70 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhC--CCCc
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAF--PAIP 506 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~--~~~~ 506 (663)
..+.+|.++|.|+...+.++ +.|+.+..- .+-.+.++...-.+.|.+++-.+- +..-...+..+|+.. ++++
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHV-RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE-SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe-CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 45678999999988765544 356666443 233556666666788988887653 234456777778763 7788
Q ss_pred EEEEec--ChhhHHHHHHcCCCeEEcCc
Q 006034 507 IYARAQ--DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 507 iia~~~--~~~~~~~l~~~Gad~vi~p~ 532 (663)
+++... +.+......++|++.++.-.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKP 111 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESS
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCC
Confidence 877664 55666777889999877654
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.55 Score=46.54 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=58.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh-------------------HHHHHHH----hc--C
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVKESR----KL--G 456 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~-------------------~~~~~~~----~~--~ 456 (663)
+.||+|+|.|..|..+++.|. ..|. ++.++|.|. .+++.+. +. +
T Consensus 28 ~~~VlvvG~GglG~~va~~La----------~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 97 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLA----------GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD 97 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHH----------HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred cCcEEEEccCHHHHHHHHHHH----------HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC
Confidence 468999999999999999997 5666 788998874 3444333 21 2
Q ss_pred CCE--EEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 457 FPI--LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 457 ~~v--i~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
..+ +..+.+ ++.+.+. ++++|.||.++++.+....+...+++.+
T Consensus 98 ~~v~~~~~~~~-~~~~~~~-~~~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 98 IQLTALQQRLT-GEALKDA-VARADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp SEEEEECSCCC-HHHHHHH-HHHCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred CEEEEEeccCC-HHHHHHH-HhcCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 322 222233 3333221 4578988888888776667777777764
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.13 Score=53.09 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=47.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++-|+|+|++|+.+|+.|. ..|.+|++.|++++..+ +.....+. +.|+++ ++++|.|
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~-----~~~~~~~~----~~l~el-l~~aDiV 197 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQ----------AWGFPLRCWSRSRKSWP-----GVESYVGR----EELRAF-LNQTRVL 197 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHH----------TTTCCEEEEESSCCCCT-----TCEEEESH----HHHHHH-HHTCSEE
T ss_pred CCCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEcCCchhhh-----hhhhhccc----CCHHHH-HhhCCEE
Confidence 3468999999999999999998 78999999999887432 23223332 223322 3578888
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
++..+..
T Consensus 198 ~l~~Plt 204 (315)
T 3pp8_A 198 INLLPNT 204 (315)
T ss_dssp EECCCCC
T ss_pred EEecCCc
Confidence 8887754
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.31 Score=50.46 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=54.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++-|+|+|++|+.+|+.|. ..|.+|++.|++++..+...+.+... .+-++.+ +++|.|+
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~----------~~G~~V~~~d~~~~~~~~~~~~g~~~----~~l~ell-----~~aDvV~ 205 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQ----------GWGATLQYHEAKALDTQTEQRLGLRQ----VACSELF-----ASSDFIL 205 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTT----------TSCCEEEEECSSCCCHHHHHHHTEEE----CCHHHHH-----HHCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEECCCCCcHhHHHhcCcee----CCHHHHH-----hhCCEEE
Confidence 457999999999999999997 78999999999875544444444321 1223344 3578888
Q ss_pred EEcCCHHH--HHHHHHHHHHhCCC
Q 006034 483 IMYTDKKR--TIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~--n~~~~~~~r~~~~~ 504 (663)
++.+.++. ++.-....+.+.|+
T Consensus 206 l~~P~t~~t~~li~~~~l~~mk~g 229 (330)
T 4e5n_A 206 LALPLNADTLHLVNAELLALVRPG 229 (330)
T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTT
T ss_pred EcCCCCHHHHHHhCHHHHhhCCCC
Confidence 88775432 22222344444444
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.23 Score=48.60 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=63.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCE-EEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~v-vvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|.|+|+|++|+.+++.|. +.++++ .+.|++++ .+ . ..+|.+-+-+ .++|.|+.
T Consensus 2 ~vgiIG~G~mG~~~~~~l~----------~~g~~lv~v~d~~~~-~~----~-------~~~~~~~l~~---~~~DvVv~ 56 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLE----------RNGFEIAAILDVRGE-HE----K-------MVRGIDEFLQ---REMDVAVE 56 (236)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEEECSSCC-CT----T-------EESSHHHHTT---SCCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHh----------cCCCEEEEEEecCcc-hh----h-------hcCCHHHHhc---CCCCEEEE
Confidence 5889999999999999997 678887 57888752 21 1 2334443322 68999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEec----Ch----hhHHHHHHcCCCeEEcCchH
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DM----MHLLDLKKAGATDAILENAE 534 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~----~~----~~~~~l~~~Gad~vi~p~~~ 534 (663)
+++++ .....+..+-+.+ ..++.... ++ +-.+..++.|....+.+...
T Consensus 57 ~~~~~-~~~~~~~~~l~~G--~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~ 112 (236)
T 2dc1_A 57 AASQQ-AVKDYAEKILKAG--IDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAI 112 (236)
T ss_dssp CSCHH-HHHHHHHHHHHTT--CEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTC
T ss_pred CCCHH-HHHHHHHHHHHCC--CcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccc
Confidence 99876 3344444444433 35555322 11 22233456677766676643
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.43 Score=49.68 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=54.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++-|+|+|++|+.+|+.|. ..|.+|.+.|+++...+... +... ..+.+-+ ++++|.|+
T Consensus 173 gktvGIIGlG~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~~~~--g~~~----~~~l~el----l~~sDvV~ 232 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRAR----------GFGLAIHYHNRTRLSHALEE--GAIY----HDTLDSL----LGASDIFL 232 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHH----------TTTCEEEEECSSCCCHHHHT--TCEE----CSSHHHH----HHTCSEEE
T ss_pred CCEEEEEEeChhHHHHHHHHH----------HCCCEEEEECCCCcchhhhc--CCeE----eCCHHHH----HhhCCEEE
Confidence 457999999999999999998 78999999999875443222 3222 1233322 34789898
Q ss_pred EEcCCHHHH--HHHHHHHHHhCCC
Q 006034 483 IMYTDKKRT--IEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~n--~~~~~~~r~~~~~ 504 (663)
+.++.++++ +.-....+.+.|+
T Consensus 233 l~~Plt~~T~~li~~~~l~~mk~g 256 (345)
T 4g2n_A 233 IAAPGRPELKGFLDHDRIAKIPEG 256 (345)
T ss_dssp ECSCCCGGGTTCBCHHHHHHSCTT
T ss_pred EecCCCHHHHHHhCHHHHhhCCCC
Confidence 888864332 2323455566555
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=0.63 Score=45.97 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=62.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|+|+|+ |++|+.+++.+.+ .++++++ ++|.+ .|.+.+.+ .++|++|
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~---------~~~~elva~~d~~-------------------~dl~~~~~---~~~DvvI 50 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAA---------ADDLTLSAELDAG-------------------DPLSLLTD---GNTEVVI 50 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------CTTCEEEEEECTT-------------------CCTHHHHH---TTCCEEE
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEccC-------------------CCHHHHhc---cCCcEEE
Confidence 5899996 9999999999862 5678876 55543 12222222 3678666
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHHc-----CCCeEEcCchHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKKA-----GATDAILENAETSLQLGSKL 543 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~-----Gad~vi~p~~~~~~~la~~~ 543 (663)
=.|+.+ .....+..+.+.+. +++.-. -+++..+.++++ ++-.++.|+.-.|-.+-.++
T Consensus 51 DfT~p~-a~~~~~~~a~~~g~--~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l 115 (245)
T 1p9l_A 51 DFTHPD-VVMGNLEFLIDNGI--HAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHF 115 (245)
T ss_dssp ECSCTT-THHHHHHHHHHTTC--EEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHH
T ss_pred EccChH-HHHHHHHHHHHcCC--CEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHH
Confidence 455443 33333445555543 444422 344555555554 67778999975555444433
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.19 E-value=0.23 Score=49.16 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=51.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc------C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a------~ 474 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++. +...+ .. .++.+|.+|++.++++ .
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 7 KGVLVTGGARGIGRAIAQAFA----------REGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 46888876 788999999998 789999999999877 54433 13 7889999998866543 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 75 ~g~iD~lv~~A 85 (256)
T 2d1y_A 75 LGRVDVLVNNA 85 (256)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 23567666543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.26 Score=49.63 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+ .....+.+|.+|++-.+++
T Consensus 6 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 6 EVALITGGASGLGRALVDRFV----------AEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46777775 679999999998 789999999999998877664 2456788999998765442
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~g~iD~lvnnA 87 (281)
T 3zv4_A 76 AFGKIDTLIPNA 87 (281)
T ss_dssp HHSCCCEEECCC
T ss_pred hcCCCCEEEECC
Confidence 123557665443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.065 Score=57.25 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=63.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCC-------------CHH-
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS-------------RPA- 468 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~-------------~~~- 468 (663)
..+++|+|+|.+|+.+++.+. ..|.+|++.|.++++.+.+.+.|..++.-|.. +++
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~----------~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~ 241 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAAN----------SLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAF 241 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHH
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHH
Confidence 468999999999999999997 78889999999999988887766554421211 111
Q ss_pred ------HHHhcCCCCCcEEEEEc---CCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 469 ------VLLSAGITSPKAVMIMY---TDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 469 ------~L~~a~i~~a~~vv~~~---~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
.+++ -+.++|.++.++ +.+...+......+.+.|...++-.+
T Consensus 242 ~~~~~~~l~e-~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 242 IKAEMELFAA-QAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHH-HHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHH-HhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 2322 224689887773 21111222234566677774555444
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.087 Score=53.25 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=68.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|.|..|+.++..|. +.|. ++.++++++++.+.+.+. .... ..+-+.++ ++++|.|
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~----------~~G~~~v~v~~R~~~~a~~la~~-~~~~-----~~~~~~~~-~~~aDiV 179 (277)
T 3don_A 117 DAYILILGAGGASKGIANELY----------KIVRPTLTVANRTMSRFNNWSLN-INKI-----NLSHAESH-LDEFDII 179 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHH----------TTCCSCCEEECSCGGGGTTCCSC-CEEE-----CHHHHHHT-GGGCSEE
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHh-cccc-----cHhhHHHH-hcCCCEE
Confidence 457999999999999999998 7887 899999999987766542 2211 22334432 6789988
Q ss_pred EEEcCCHH-HHHHHHHHHHHhCCCCcEEEEecChhh---HHHHHHcCCCeEEcCchH
Q 006034 482 MIMYTDKK-RTIEAVQRLRLAFPAIPIYARAQDMMH---LLDLKKAGATDAILENAE 534 (663)
Q Consensus 482 v~~~~dd~-~n~~~~~~~r~~~~~~~iia~~~~~~~---~~~l~~~Gad~vi~p~~~ 534 (663)
|.+|+... .+.....-...+.++.-++=.+.++.. .+..++.|+. +++-...
T Consensus 180 InaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T~ll~~A~~~G~~-~~~Gl~M 235 (277)
T 3don_A 180 INTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNP-IYNGLDM 235 (277)
T ss_dssp EECCC-------CCSSCCTTCCSSCEEEESCCSSSSCHHHHHHHHTTCC-EECTHHH
T ss_pred EECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCCHHHHHHHHCcCE-EeCCHHH
Confidence 88876531 111000111123334223334445533 3445678884 5666543
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=91.12 E-value=0.12 Score=54.91 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=55.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++-|+|+|++|+.+++.|. ..|.+|.+.|++++..+...+.|.... .+.+.+ ++++|.|+
T Consensus 191 gktvGIIGlG~IG~~vA~~l~----------a~G~~V~~~d~~~~~~~~~~~~G~~~~----~~l~el----l~~aDvV~ 252 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLA----------PFDVHLHYTDRHRLPESVEKELNLTWH----ATREDM----YPVCDVVT 252 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHG----------GGTCEEEEECSSCCCHHHHHHHTCEEC----SSHHHH----GGGCSEEE
T ss_pred CCEEEEEeECHHHHHHHHHHH----------hCCCEEEEEcCCccchhhHhhcCceec----CCHHHH----HhcCCEEE
Confidence 457999999999999999997 789999999998765555555454321 222222 24789888
Q ss_pred EEcCCHHH--HHHHHHHHHHhCCC
Q 006034 483 IMYTDKKR--TIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~--n~~~~~~~r~~~~~ 504 (663)
+..+.++. ++.-....+.+.++
T Consensus 253 l~~Plt~~t~~li~~~~l~~mk~g 276 (393)
T 2nac_A 253 LNCPLHPETEHMINDETLKLFKRG 276 (393)
T ss_dssp ECSCCCTTTTTCBSHHHHTTSCTT
T ss_pred EecCCchHHHHHhhHHHHhhCCCC
Confidence 88875432 22222344445555
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.09 E-value=0.17 Score=50.22 Aligned_cols=72 Identities=17% Similarity=0.062 Sum_probs=51.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC---CCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~---~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.|. |-+|+.+++.|. +.| ++|++++++++..+.+.+ ....++.+|.+|++.++++-
T Consensus 22 k~vlITGasggIG~~la~~L~----------~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 91 (267)
T 1sny_A 22 NSILITGCNRGLGLGLVKALL----------NLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLV 91 (267)
T ss_dssp SEEEESCCSSHHHHHHHHHHH----------TSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH----------hcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHH
Confidence 45777765 889999999998 677 999999999875443332 24677899999998766531
Q ss_pred --C----C--CCcEEEEEc
Q 006034 475 --I----T--SPKAVMIMY 485 (663)
Q Consensus 475 --i----~--~a~~vv~~~ 485 (663)
+ . +.|.+|-..
T Consensus 92 ~~~~~~~g~~~id~li~~A 110 (267)
T 1sny_A 92 ADIEGVTKDQGLNVLFNNA 110 (267)
T ss_dssp HHHHHHHGGGCCSEEEECC
T ss_pred HHHHHhcCCCCccEEEECC
Confidence 0 1 567776554
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.72 Score=49.73 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=71.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh----cCC---CEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK----LGF---PILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~----~~~---~vi~GD~~~~~~L~~a~i 475 (663)
-+|.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+. .++.++.+|.+-+-+ -
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~---------~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~--~ 89 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMAR---------RDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLK--D 89 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHT---------CTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTT--C
T ss_pred ceEEEEecCHHHHHHHHHHHh---------CCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhc--C
Confidence 379999999999999999872 4567765 66999999887654 343 333333334443322 2
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHH----HHHcCCCeEEc
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLD----LKKAGATDAIL 530 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~----l~~~Gad~vi~ 530 (663)
.+.|+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+. .++.|....+.
T Consensus 90 ~~vD~V~i~tp~~~h-~~~~~~al~aG--khV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 148 (444)
T 2ixa_A 90 KNIDAVFVSSPWEWH-HEHGVAAMKAG--KIVGMEVSGAITLEECWDYVKVSEQTGVPLMAL 148 (444)
T ss_dssp TTCCEEEECCCGGGH-HHHHHHHHHTT--CEEEECCCCCSSHHHHHHHHHHHHHHCCCEEEC
T ss_pred CCCCEEEEcCCcHHH-HHHHHHHHHCC--CeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 468999999997643 44444444544 356663 344444333 35668776654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.14 Score=51.22 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---------cCCCEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---------~~~~vi~GD~~~~~~L~~a 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++.++++
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 76 (278)
T 1spx_A 7 KVAIITGSSNGIGRATAVLFA----------REGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEI 76 (278)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHH
Confidence 45777775 789999999998 789999999999987665432 1256788999999877653
Q ss_pred C------CCCCcEEEEEc
Q 006034 474 G------ITSPKAVMIMY 485 (663)
Q Consensus 474 ~------i~~a~~vv~~~ 485 (663)
= ..+.|.+|-..
T Consensus 77 ~~~~~~~~g~id~lv~~A 94 (278)
T 1spx_A 77 LSTTLGKFGKLDILVNNA 94 (278)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 1 12567666543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.4 Score=55.14 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=36.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
-++|-|+|.|.+|..+|..|. +.|++|++.|.|++.++..
T Consensus 314 i~kV~VIGaG~MG~~iA~~la----------~aG~~V~l~D~~~~~~~~~ 353 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSA----------SKGTPILMKDINEHGIEQG 353 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHH
T ss_pred CCEEEEECCChhhHHHHHHHH----------hCCCEEEEEECCHHHHHHH
Confidence 457999999999999999997 7899999999999987763
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.29 Score=48.69 Aligned_cols=72 Identities=10% Similarity=0.047 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----c---CCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----L---GFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~---~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++|+++.+...+ . ....+.+|.+|++-.+++
T Consensus 9 k~~lVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 78 (265)
T 3lf2_A 9 AVAVVTGGSSGIGLATVELLL----------EAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFA 78 (265)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHH
Confidence 46777776 679999999998 789999999999987665432 1 256778999998876543
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 79 ~~~~~~~g~id~lvnnA 95 (265)
T 3lf2_A 79 EACERTLGCASILVNNA 95 (265)
T ss_dssp HHHHHHHCSCSEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 123567666544
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.16 Score=50.26 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=52.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++ +++..+.+.+ . ...++.+|.+|++.++++
T Consensus 8 k~vlITGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (261)
T 1gee_A 8 KVVVITGSSTGLGKSMAIRFA----------TEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 46777765 788999999998 78999999999 8776554432 2 356788999999876653
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~~g~id~li~~A 93 (261)
T 1gee_A 78 SAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 112568776553
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=91.02 E-value=0.27 Score=48.39 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=54.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. +-+|+.+++.|. ++|++|++++++++..+...+ .....+.+|.+|++-.+++
T Consensus 10 k~~lVTGas~gIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLA----------ERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITD 79 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHH
Confidence 45777776 678999999998 789999999999988776553 3456788999999876543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 80 ~~g~iD~lv~nA 91 (248)
T 3op4_A 80 EFGGVDILVNNA 91 (248)
T ss_dssp HHCCCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 113567666543
|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A | Back alignment and structure |
|---|
Probab=91.01 E-value=0.83 Score=39.61 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=56.4
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCC-CCcEE
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP-AIPIY 508 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~-~~~ii 508 (663)
..+.++.++|.|+...+.+. +.|+.+...+ +-.+.++...-...|.++ .++ ......+..+|+. + +++++
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l~~~~~dlvi--~~~-~~g~~~~~~l~~~-~~~~~ii 90 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTE-SLEDGEYLMDIRNYDLVM--VSD-KNALSFVSRIKEK-HSSIVVL 90 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEES-CHHHHHHHHHHSCCSEEE--ECS-TTHHHHHHHHHHH-STTSEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeC-CHHHHHHHHHcCCCCEEE--EcC-ccHHHHHHHHHhc-CCCccEE
Confidence 34556777777776544333 3455554321 223344433334678776 333 3345677778887 7 88888
Q ss_pred EEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 509 ARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 509 a~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
...... +......+.|++.++.-.
T Consensus 91 ~ls~~~~~~~~~~~~~~g~~~~l~kP 116 (137)
T 2pln_A 91 VSSDNPTSEEEVHAFEQGADDYIAKP 116 (137)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred EEeCCCCHHHHHHHHHcCCceeeeCC
Confidence 776544 666777889999876554
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.099 Score=56.55 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=48.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCC------CCCEEEEeCC-hHHHHHHHhcCCCEEEecC-CCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV------GWPFVAFDLN-PSVVKESRKLGFPILYGDA-SRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~------~~~vvvid~d-~~~~~~~~~~~~~vi~GD~-~~~~~L~~a~i 475 (663)
++|.|+|+|.+|..+++.|. +. |.+|++-+++ ++..+.+.+.|..+..+.. +..+..
T Consensus 55 KkIgIIGlGsMG~AmA~nLr----------~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa----- 119 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLR----------DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETV----- 119 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHH----------HHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHH-----
T ss_pred CEEEEEeEhHHHHHHHHHHH----------hcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHH-----
Confidence 48999999999999999998 55 8888766554 4455666666655310000 122333
Q ss_pred CCCcEEEEEcCCHH
Q 006034 476 TSPKAVMIMYTDKK 489 (663)
Q Consensus 476 ~~a~~vv~~~~dd~ 489 (663)
++||.|++++.+..
T Consensus 120 ~~ADVVILaVP~~~ 133 (525)
T 3fr7_A 120 SGSDLVLLLISDAA 133 (525)
T ss_dssp HHCSEEEECSCHHH
T ss_pred hcCCEEEECCChHH
Confidence 46898999998863
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.4 Score=49.83 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++-|+|+|++|+.+|+.+. ..|.+|.+.|++++.. .+.. . ..+.+-+ ++++|.|+
T Consensus 171 gktiGIIGlG~IG~~vA~~l~----------~~G~~V~~~dr~~~~~-----~~~~--~--~~sl~el----l~~aDvVi 227 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAE----------AFGMSVRYWNRSTLSG-----VDWI--A--HQSPVDL----ARDSDVLA 227 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSCCTT-----SCCE--E--CSSHHHH----HHTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCcccc-----cCce--e--cCCHHHH----HhcCCEEE
Confidence 457999999999999999997 7899999999988651 1221 1 2233222 34789898
Q ss_pred EEcCCHHHHH--HHHHHHHHhCCCC
Q 006034 483 IMYTDKKRTI--EAVQRLRLAFPAI 505 (663)
Q Consensus 483 ~~~~dd~~n~--~~~~~~r~~~~~~ 505 (663)
++.+..+.+. .-....+.+.|+.
T Consensus 228 l~vP~t~~t~~li~~~~l~~mk~ga 252 (340)
T 4dgs_A 228 VCVAASAATQNIVDASLLQALGPEG 252 (340)
T ss_dssp ECC----------CHHHHHHTTTTC
T ss_pred EeCCCCHHHHHHhhHHHHhcCCCCC
Confidence 8888654333 3235555666663
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.23 Score=48.41 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=53.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh----c--CCCE-EEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK----L--GFPI-LYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~----~--~~~v-i~GD~~~~~~L~~a- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++ ++++++.+.+.+ . .... +.+|.+|++.++++
T Consensus 2 k~vlITGasggiG~~~a~~l~----------~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLA----------EDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALV 71 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------TTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHH
Confidence 35778875 789999999998 789999998 888887655432 2 2445 88999999987765
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 72 ~~~~~~~~~~d~li~~A 88 (245)
T 2ph3_A 72 HQAAEVLGGLDTLVNNA 88 (245)
T ss_dssp HHHHHHHTCCCEEEECC
T ss_pred HHHHHhcCCCCEEEECC
Confidence 123678776654
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.31 Score=52.67 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~ 455 (663)
..-++.++|.|.+|..+|..|. +.|++|+++|.|+++++.+.+.
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La----------~~G~~V~~~D~~~~kv~~l~~g 50 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFS----------DFGHEVVCVDKDARKIELLHQN 50 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCSTTHHHHTTT
T ss_pred CceEEEEEcCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHhcC
Confidence 4557999999999999999998 7899999999999999998863
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.11 Score=54.08 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=48.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~v 481 (663)
.+++.|+|+|++|+.+++.+. ..|.+|.+.|++++. +...+.+... .+. +.+ +++|.+
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~-----~~l~e~l-----~~aDiV 204 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLI----------PFGVKLYYWSRHRKV-NVEKELKARY-----MDIDELL-----EKSDIV 204 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHG----------GGTCEEEEECSSCCH-HHHHHHTEEE-----CCHHHHH-----HHCSEE
T ss_pred cCEEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCcch-hhhhhcCcee-----cCHHHHH-----hhCCEE
Confidence 457999999999999999997 789999999999876 4444444321 233 333 368888
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+.+++.+
T Consensus 205 il~vp~~ 211 (333)
T 2d0i_A 205 ILALPLT 211 (333)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 8888875
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.35 Score=50.18 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=68.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCC-CEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGF-PILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~-~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+|.|+|+|.+|+..++.|.+ +..+.+++ +.|.|+++.+.+.+ .+. ...+.| -++.+++ .+.|+|
T Consensus 4 rigiIG~G~~g~~~~~~l~~--------~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~--~~~ll~~---~~~D~V 70 (344)
T 3mz0_A 4 RIGVIGTGAIGKEHINRITN--------KLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPN--DDSLLAD---ENVDAV 70 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------TCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESS--HHHHHHC---TTCCEE
T ss_pred EEEEECccHHHHHHHHHHHh--------hCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCC--HHHHhcC---CCCCEE
Confidence 69999999999999999861 13567766 67999999888765 452 223322 2344443 468999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCe
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATD 527 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~ 527 (663)
+++++++.. ...+..+-+.+ .++++. +.+.+..+.+ ++.|...
T Consensus 71 ~i~tp~~~h-~~~~~~al~~G--k~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 71 LVTSWGPAH-ESSVLKAIKAQ--KYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred EECCCchhH-HHHHHHHHHCC--CcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 999987643 44444555554 356662 3344444433 5556654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.91 E-value=0.19 Score=49.95 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=51.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHH----hc--CCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESR----KL--GFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~----~~--~~~vi~GD~~~~~~L~~a~- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++ +++..+... +. ...++.+|.+|++.++++=
T Consensus 22 k~vlItGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 91 (274)
T 1ja9_A 22 KVALTTGAGRGIGRGIAIELG----------RRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFD 91 (274)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 46777775 789999999998 78999999999 777655433 22 3457889999998776531
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 92 ~~~~~~~~~d~vi~~A 107 (274)
T 1ja9_A 92 KAVSHFGGLDFVMSNS 107 (274)
T ss_dssp HHHHHHSCEEEEECCC
T ss_pred HHHHHcCCCCEEEECC
Confidence 12567666543
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=90.85 E-value=0.32 Score=48.53 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=54.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|++.++++++.+.+.+ ....++.+|.+|++-.+++
T Consensus 28 k~vlVTGas~gIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFH----------AQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAER 97 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 45666665 679999999998 789999999999998777654 2466788999999876653
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 98 ~~g~iD~lvnnA 109 (266)
T 3grp_A 98 EMEGIDILVNNA 109 (266)
T ss_dssp HHTSCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 113567666544
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.25 Score=48.91 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 6 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T 2qq5_A 6 QVCVVTGASRGIGRGIALQLC----------KAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQ 75 (260)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHH
Confidence 45677765 779999999998 789999999999987655432 1 356788999999866543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 76 VDREQQGRLDVLVNNA 91 (260)
T ss_dssp HHHHHTTCCCEEEECC
T ss_pred HHHhcCCCceEEEECC
Confidence 145678777655
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.19 Score=49.23 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=30.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
+.+|.|+|.|++|..+++.|. +.|++|+.+|..+
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~----------~~G~~V~~~~~~~ 39 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLD----------SVGHYVTVLHAPE 39 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHH----------HTTCEEEECSSGG
T ss_pred CcEEEEEeeCHHHHHHHHHHH----------HCCCEEEEecCHH
Confidence 457999999999999999998 7899999999853
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.28 Score=49.83 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=52.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++..+++
T Consensus 42 k~vlVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~ 111 (293)
T 3rih_A 42 RSVLVTGGTKGIGRGIATVFA----------RAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAAR 111 (293)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHH
Confidence 35666665 679999999998 789999999999987665543 2356789999999866543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 112 ~~~~~~g~iD~lvnnA 127 (293)
T 3rih_A 112 TVVDAFGALDVVCANA 127 (293)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 123567666543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.25 Score=48.92 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ . ....+.+|.+|++-.+++
T Consensus 13 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFA----------KAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 45677775 679999999998 789999999999988665543 2 356688999999876543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 83 ~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 83 ALDQFGKITVLVNNA 97 (256)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 112567666543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.058 Score=56.09 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=53.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|++++..+ +... ..+.+.+ ++++|.|+
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~----------~~G~~V~~~dr~~~~~~-----g~~~----~~~l~el----l~~aDvVi 220 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAE----------AFDCPISYFSRSKKPNT-----NYTY----YGSVVEL----ASNSDILV 220 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHH----------TTTCCEEEECSSCCTTC-----CSEE----ESCHHHH----HHTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEECCCchhcc-----Ccee----cCCHHHH----HhcCCEEE
Confidence 357999999999999999997 78999999999887532 3221 1233222 24789899
Q ss_pred EEcCCHHH--HHHHHHHHHHhCCC
Q 006034 483 IMYTDKKR--TIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~--n~~~~~~~r~~~~~ 504 (663)
++++.+.. ++.-....+.+.|+
T Consensus 221 l~vP~~~~t~~li~~~~l~~mk~g 244 (333)
T 3ba1_A 221 VACPLTPETTHIINREVIDALGPK 244 (333)
T ss_dssp ECSCCCGGGTTCBCHHHHHHHCTT
T ss_pred EecCCChHHHHHhhHHHHhcCCCC
Confidence 98887432 22212344556665
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.25 Score=49.64 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++-.+++
T Consensus 24 ~k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 93 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLA----------ARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVA 93 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 356788886 678999999998 789999999999988665443 2 356788999999866542
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 94 ~~~~~~g~id~lv~nA 109 (279)
T 3sju_A 94 AAVERFGPIGILVNSA 109 (279)
T ss_dssp HHHHHHCSCCEEEECC
T ss_pred HHHHHcCCCcEEEECC
Confidence 123567666543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.18 Score=50.38 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=53.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. +.|++|+++++++++.+.+.+ .+ ...+.+|.+|++-.+++
T Consensus 5 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 74 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELG----------VAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQA 74 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46788886 679999999998 789999999999988766543 23 45678999999876553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 75 ~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 75 AVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 123567666543
|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=90.72 E-value=0.61 Score=40.79 Aligned_cols=98 Identities=12% Similarity=-0.078 Sum_probs=62.5
Q ss_pred CCCCCEEEEeCChHHHHHHHh----c-CCCEEEecCCC-HHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCc
Q 006034 434 TVGWPFVAFDLNPSVVKESRK----L-GFPILYGDASR-PAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIP 506 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~~----~-~~~vi~GD~~~-~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~ 506 (663)
....++.++|.|+...+.+.+ . ++.++. .+.+ .+.++...-...|.+++-.+-+ ......+..+|+.++..+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVG-SFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEE-EeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 345789999999987655442 3 555442 3333 3455444445688877765432 344567777888777777
Q ss_pred EEEEecChhhHHHHHHcCCCeEEcCc
Q 006034 507 IYARAQDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 507 iia~~~~~~~~~~l~~~Gad~vi~p~ 532 (663)
++....+.+......+.|++.++...
T Consensus 86 ii~~s~~~~~~~~~~~~g~~~~l~KP 111 (143)
T 2qv0_A 86 IVFITAWKEHAVEAFELEAFDYILKP 111 (143)
T ss_dssp EEEEESCCTTHHHHHHTTCSEEEESS
T ss_pred EEEEeCCHHHHHHHHhCCcceEEeCC
Confidence 87777777777778899999876544
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.11 Score=53.53 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH--HHHHh----cCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRK----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~--~~~~~----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++.. +.+.+ .+..++.+|.+|++.++++=-+
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 73 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLL----------EKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEK 73 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHh
Confidence 46999997 999999999997 6899999999987643 22322 2467788999999877654111
Q ss_pred -CCcEEEEEcC
Q 006034 477 -SPKAVMIMYT 486 (663)
Q Consensus 477 -~a~~vv~~~~ 486 (663)
+.|.||-+..
T Consensus 74 ~~~d~vih~A~ 84 (345)
T 2z1m_A 74 VQPDEVYNLAA 84 (345)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCC
Confidence 4687776543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.69 E-value=0.44 Score=49.33 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH---HHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA---VLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~---~L~~a~i~~a 478 (663)
..++++|.|.|.+|+..++.++ ..|.+|+++|.++++.+.+++.|...+. |.++++ .+++.. ..+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~-d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAK----------AMGLNVVAVDIGDEKLELAKELGADLVV-NPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCSEEE-CTTTSCHHHHHHHHH-SSE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHCCCCEEe-cCCCccHHHHHHHHh-CCC
Confidence 3468999999999999999987 6889999999999999988887766443 555433 233332 578
Q ss_pred cEEEEEcCCH
Q 006034 479 KAVMIMYTDK 488 (663)
Q Consensus 479 ~~vv~~~~dd 488 (663)
|.++-+++..
T Consensus 232 d~vid~~g~~ 241 (339)
T 1rjw_A 232 HAAVVTAVSK 241 (339)
T ss_dssp EEEEESSCCH
T ss_pred CEEEECCCCH
Confidence 9888877764
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=90.64 E-value=0.1 Score=53.21 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=53.4
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC-CCCc
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI-TSPK 479 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i-~~a~ 479 (663)
..++++|.|. |-+|+.+++.|. +.|++|++++++++. +. .+..++.+|.+|++.++++=- .+.|
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~-~~---l~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLT----------EQNVEVFGTSRNNEA-KL---PNVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCTTC-CC---TTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CcceEEEECCCChHHHHHHHHHH----------HCCCEEEEEecCCcc-cc---ceeeEEECCCCCHHHHHHHHHhcCCC
Confidence 4567888876 899999999997 689999999998765 22 156788999999988766411 2478
Q ss_pred EEEEEcC
Q 006034 480 AVMIMYT 486 (663)
Q Consensus 480 ~vv~~~~ 486 (663)
.||-+..
T Consensus 77 ~vih~A~ 83 (321)
T 2pk3_A 77 YIFHLAA 83 (321)
T ss_dssp EEEECCS
T ss_pred EEEEcCc
Confidence 7776543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=90.61 E-value=0.97 Score=47.12 Aligned_cols=109 Identities=8% Similarity=0.026 Sum_probs=66.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCE-EEEeCChHHHHHHHh-cCC---CEEEecCCCHHHHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRK-LGF---PILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~v-vvid~d~~~~~~~~~-~~~---~vi~GD~~~~~~L~~a~i~~a 478 (663)
-++.|+|+|++|+..++.|.+ ..+.++ .+.|.|+++.+.+.+ .+. ...+.| -++++++ .+.
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~---------~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~--~~~ll~~---~~~ 72 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHL---------APNATISGVASRSLEKAKAFATANNYPESTKIHGS--YESLLED---PEI 72 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESS--HHHHHHC---TTC
T ss_pred eEEEEECchHHHHHHHHHHhh---------CCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCC--HHHHhcC---CCC
Confidence 379999999999999999872 456665 477999999887665 343 223322 2345543 467
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHH----HHHcCCCeEE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLD----LKKAGATDAI 529 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~----l~~~Gad~vi 529 (663)
|+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+. .++.|.-..+
T Consensus 73 D~V~i~tp~~~h-~~~~~~al~aG--k~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~ 127 (362)
T 1ydw_A 73 DALYVPLPTSLH-VEWAIKAAEKG--KHILLEKPVAMNVTEFDKIVDACEANGVQIMD 127 (362)
T ss_dssp CEEEECCCGGGH-HHHHHHHHTTT--CEEEECSSCSSSHHHHHHHHHHHHTTTCCEEE
T ss_pred CEEEEcCChHHH-HHHHHHHHHCC--CeEEEecCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 999999987643 33344443333 356663 234333333 3445665543
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.98 Score=39.20 Aligned_cols=99 Identities=9% Similarity=0.036 Sum_probs=61.9
Q ss_pred CCCCCEEEEeCChHHHHHHH----h-cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHH--hCCCC
Q 006034 434 TVGWPFVAFDLNPSVVKESR----K-LGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRL--AFPAI 505 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~--~~~~~ 505 (663)
....++.++|.|+...+.++ + .++.++.--.+-.+.++...-.+.|.+++-.+-. ......+..+|+ .++++
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 34577888888887654433 4 5777333222334455544445688887776532 344567778888 67888
Q ss_pred cEEEEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 506 PIYARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 506 ~iia~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
++++..... +......+.|++.++...
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP 114 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFGKP 114 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEeCC
Confidence 888776644 444677789999876544
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.22 Score=48.88 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=52.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHH----hc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESR----KL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~----~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++ ++++.+... +. ...++.+|.+|++.++++
T Consensus 5 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T 2uvd_A 5 KVALVTGASRGIGRAIAIDLA----------KQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVK 74 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 45777775 789999999998 78999999999 887765443 22 356788999999877653
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 75 ~~~~~~g~id~lv~nA 90 (246)
T 2uvd_A 75 QTVDVFGQVDILVNNA 90 (246)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 113567776543
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=90.55 E-value=0.2 Score=53.45 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH-hcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..+++.|+|+|.+|+.+++.|. ..|. +|+++|+++++.+.+. +.|..++ +..+ +.++ +.++|
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~----------~~G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~---l~~~-l~~aD 229 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLV----------DRGVRAVLVANRTYERAVELARDLGGEAV--RFDE---LVDH-LARSD 229 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHH----------HHCCSEEEEECSSHHHHHHHHHHHTCEEC--CGGG---HHHH-HHTCS
T ss_pred cCCEEEEEChHHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHcCCcee--cHHh---HHHH-hcCCC
Confidence 3568999999999999999997 6787 8999999999885544 4454432 2222 2221 25799
Q ss_pred EEEEEcCCH
Q 006034 480 AVMIMYTDK 488 (663)
Q Consensus 480 ~vv~~~~dd 488 (663)
.|+.+|+..
T Consensus 230 vVi~at~~~ 238 (404)
T 1gpj_A 230 VVVSATAAP 238 (404)
T ss_dssp EEEECCSSS
T ss_pred EEEEccCCC
Confidence 999988764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.39 Score=47.99 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=52.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|++++++++..+...+ .....+.+|.+|++..+++
T Consensus 29 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 98 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELA----------RRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVES 98 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHH
Confidence 34566665 679999999998 789999999999987665432 2467789999999876543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 99 ~~~~~g~iD~lvnnA 113 (270)
T 3ftp_A 99 TLKEFGALNVLVNNA 113 (270)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 123567776554
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.16 Score=51.19 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=42.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|.|++|..+++.|. +. ++|+ +.|+++++.+.+.+ .+. .. +|. ++ -++++|.|+
T Consensus 4 ~I~iIG~G~mG~~la~~l~----------~~-~~v~~v~~~~~~~~~~~~~~~g~--~~---~~~---~~-~~~~~DvVi 63 (276)
T 2i76_A 4 VLNFVGTGTLTRFFLECLK----------DR-YEIGYILSRSIDRARNLAEVYGG--KA---ATL---EK-HPELNGVVF 63 (276)
T ss_dssp CCEEESCCHHHHHHHHTTC---------------CCCEECSSHHHHHHHHHHTCC--CC---CSS---CC-CCC---CEE
T ss_pred eEEEEeCCHHHHHHHHHHH----------Hc-CcEEEEEeCCHHHHHHHHHHcCC--cc---CCH---HH-HHhcCCEEE
Confidence 5899999999999999997 45 7884 89999999888765 333 11 121 11 245678888
Q ss_pred EEcCCHH
Q 006034 483 IMYTDKK 489 (663)
Q Consensus 483 ~~~~dd~ 489 (663)
+++.++.
T Consensus 64 lav~~~~ 70 (276)
T 2i76_A 64 VIVPDRY 70 (276)
T ss_dssp ECSCTTT
T ss_pred EeCChHH
Confidence 8887764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.13 Score=53.40 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=55.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-----hcCCCEEEecCCCHHHHHhcCCC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLGFPILYGDASRPAVLLSAGIT- 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-----~~~~~vi~GD~~~~~~L~~a~i~- 476 (663)
++|+|.|. |-+|+.+++.|. +.|++|++++++++..+... ..+..++.||.+|++.++++=-+
T Consensus 10 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 79 (357)
T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQ----------TMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF 79 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------hCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhc
Confidence 47999985 999999999997 68999999999876543222 23678899999999887664111
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
+.|.||-+..
T Consensus 80 ~~d~vih~A~ 89 (357)
T 1rkx_A 80 QPEIVFHMAA 89 (357)
T ss_dssp CCSEEEECCS
T ss_pred CCCEEEECCC
Confidence 4788877654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.32 Score=47.90 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=53.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHH-HHhcC--CCEEEecCCCHHHHHhc-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKE-SRKLG--FPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~-~~~~~--~~vi~GD~~~~~~L~~a----- 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++ ++.+. +.+.+ ..++.+|.+|++.++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFA----------VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVI 77 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 46788875 789999999998 7899999999998 66543 33333 55688999999877654
Q ss_pred -CCCCCcEEEEEc
Q 006034 474 -GITSPKAVMIMY 485 (663)
Q Consensus 474 -~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~g~id~lv~nA 90 (249)
T 2ew8_A 78 STFGRCDILVNNA 90 (249)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 123667776543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.36 E-value=1.9 Score=43.99 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=79.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH----h----c--CCCEEEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR----K----L--GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~----~----~--~~~vi~GD~~~~~~L~~a 473 (663)
+|.|+|.|.+|..++..|. ..+. +++++|.|+++.+... + . ...+.. . +|.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~----------~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~-t-~d~~----- 63 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLM----------MRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG-S-NSYE----- 63 (308)
T ss_dssp CEEEECCSHHHHHHHHHHH----------HHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-E-SCGG-----
T ss_pred CEEEECcCHHHHHHHHHHH----------hCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE-C-CCHH-----
Confidence 4889999999999999886 3344 6999999998764321 1 1 223332 1 2222
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-cCCC--eEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGAT--DAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l~~-~Gad--~vi~p-~ 532 (663)
.+++||.||++.+- | ..|.. ++..+++.+|+..++. +.||-+. ..+++ .|.+ +|+-- .
T Consensus 64 a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~~~~p~~rviG~gt 142 (308)
T 2d4a_B 64 DMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVI-TTNPVDAMTYVMYKKTGFPRERVIGFSG 142 (308)
T ss_dssp GGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEE-CCSSHHHHHHHHHHHHCCCGGGEEECCH
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHHHhcCCChhhEEEecc
Confidence 36899988877432 2 34544 3445566688877666 4555432 23333 3443 66666 4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~ 554 (663)
..-..++-+.+-+.+++++..+
T Consensus 143 ~LD~~R~~~~la~~lgv~~~~v 164 (308)
T 2d4a_B 143 ILDSARMAYYISQKLGVSFKSV 164 (308)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGE
T ss_pred cchHHHHHHHHHHHhCcChhHe
Confidence 4445566666666667766443
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.12 Score=55.68 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=53.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc----------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA---------- 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a---------- 473 (663)
.+|.|+|.|-+|..+|-.|. +.|++|+.+|.|+++++.+.+-..++. ++.-++.++++
T Consensus 22 ~~IaViGlGYVGLp~A~~~A----------~~G~~V~g~Did~~kV~~ln~G~~pi~--Epgl~ell~~~~~~g~l~~tt 89 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFA----------LLGHRVVGYDVNPSIVERLRAGRPHIY--EPGLEEALGRALSSGRLSFAE 89 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSCHHHHHHHHTTCCSSC--CTTHHHHHHHHHHTTCEEECS
T ss_pred CEEEEEccCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHCCCCCCC--CCCHHHHHHHHHHcCCeeEEc
Confidence 47999999999999999997 789999999999999999987433332 34434444331
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
.+.++|.++++.+
T Consensus 90 ~~~~ai~~ad~~~I~Vp 106 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVG 106 (444)
T ss_dssp SHHHHHHTSSEEEECCC
T ss_pred CHHHHHhcCCceEEEec
Confidence 1456788887754
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.23 Score=52.36 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=52.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH-----------------HH------HhcCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----------------ES------RKLGFP 458 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~-----------------~~------~~~~~~ 458 (663)
..+|+|.|. |-+|+.+++.|. +.|++|+++|++..... .+ ...+..
T Consensus 11 ~~~vlVTG~tGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 80 (404)
T 1i24_A 11 GSRVMVIGGDGYCGWATALHLS----------KKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIE 80 (404)
T ss_dssp -CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCE
T ss_pred CCeEEEeCCCcHHHHHHHHHHH----------hCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceE
Confidence 456888875 999999999997 68999999998754311 11 124678
Q ss_pred EEEecCCCHHHHHhcCCC--CCcEEEEEc
Q 006034 459 ILYGDASRPAVLLSAGIT--SPKAVMIMY 485 (663)
Q Consensus 459 vi~GD~~~~~~L~~a~i~--~a~~vv~~~ 485 (663)
++.||.+|++.++++ ++ ++|+||-+.
T Consensus 81 ~~~~Dl~d~~~~~~~-~~~~~~D~Vih~A 108 (404)
T 1i24_A 81 LYVGDICDFEFLAES-FKSFEPDSVVHFG 108 (404)
T ss_dssp EEESCTTSHHHHHHH-HHHHCCSEEEECC
T ss_pred EEECCCCCHHHHHHH-HhccCCCEEEECC
Confidence 899999999877654 22 478777654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=90.31 E-value=0.28 Score=51.28 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-HHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-~~L~~a~i~~a~~ 480 (663)
..++++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |..++ +..++.. +.+|.
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~~~~-~~~D~ 246 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISK----------AMGAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEKYF-DTFDL 246 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HHTCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHHSC-SCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHcCCCEEE-cCcCchHHHHHhh-cCCCE
Confidence 3468999999999999999886 6788999999999999988887766543 44444 4444443 57898
Q ss_pred EEEEcCC
Q 006034 481 VMIMYTD 487 (663)
Q Consensus 481 vv~~~~d 487 (663)
++-+++.
T Consensus 247 vid~~g~ 253 (360)
T 1piw_A 247 IVVCASS 253 (360)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 8888775
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.31 Score=51.13 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=54.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++-|+|+|++|+.+|+.++ ..|.+|++.|++++. +...+.+... .+.+-+ ++++|.|+
T Consensus 176 gktvGIIGlG~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~-----~~l~el----l~~aDvV~ 235 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLS----------GFRARIRVFDPWLPR-SMLEENGVEP-----ASLEDV----LTKSDFIF 235 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHT----------TSCCEEEEECSSSCH-HHHHHTTCEE-----CCHHHH----HHSCSEEE
T ss_pred CCEEEEecCCcccHHHHHhhh----------hCCCEEEEECCCCCH-HHHhhcCeee-----CCHHHH----HhcCCEEE
Confidence 457999999999999999997 789999999988633 3344455431 223322 34788888
Q ss_pred EEcCCHH--HHHHHHHHHHHhCCC
Q 006034 483 IMYTDKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~--~n~~~~~~~r~~~~~ 504 (663)
+..+..+ .++.-....+.+.|+
T Consensus 236 l~~Plt~~T~~li~~~~l~~mk~g 259 (365)
T 4hy3_A 236 VVAAVTSENKRFLGAEAFSSMRRG 259 (365)
T ss_dssp ECSCSSCC---CCCHHHHHTSCTT
T ss_pred EcCcCCHHHHhhcCHHHHhcCCCC
Confidence 8776542 333334455556665
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=90.30 E-value=1 Score=40.00 Aligned_cols=98 Identities=20% Similarity=0.151 Sum_probs=63.5
Q ss_pred CCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEE
Q 006034 435 VGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~ii 508 (663)
...++.++|.|+...+.+.+ .++.++.--.+-.+.++...-.+.|.+++-.+- +..-...+..+|+.+|+++++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 83 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARIL 83 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEE
Confidence 34678888888877655443 355554222233455555555668877776543 234466788889988888888
Q ss_pred EEecC--hhhHHHHHHcCCCeEEcCc
Q 006034 509 ARAQD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 509 a~~~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
+...+ .+......+.|++.++...
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~l~kp 109 (153)
T 3cz5_A 84 IFTMHQGSAFALKAFEAGASGYVTKS 109 (153)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEETT
T ss_pred EEECCCCHHHHHHHHHCCCcEEEecC
Confidence 77654 4566677889999876543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=0.66 Score=49.89 Aligned_cols=112 Identities=17% Similarity=0.064 Sum_probs=68.9
Q ss_pred CcEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCE-EEEeCChHHHHHHHh-cCCCE--EEecCCC-HHHHHhcCCCC
Q 006034 404 EPVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRK-LGFPI--LYGDASR-PAVLLSAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~v-vvid~d~~~~~~~~~-~~~~v--i~GD~~~-~~~L~~a~i~~ 477 (663)
-+|.|+|+|++|+ ..++.|.+ ..+.++ -+.|.|+++.+.+.+ .+... +.. .+| ++++++ .+
T Consensus 84 irigiIG~G~~g~~~~~~~l~~---------~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~-~~~~~~ll~~---~~ 150 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAG---------CQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYD-YSNFDKIAKD---PK 150 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTT---------CSSEEEEEEECSCHHHHHHHHHHTTCCGGGEEC-SSSGGGGGGC---TT
T ss_pred eEEEEECCcHHHHHHHHHHHhh---------CCCcEEEEEEcCCHHHHHHHHHHhCCCcccccc-cCCHHHHhcC---CC
Confidence 4799999999997 89998862 346665 477999999887765 34431 111 123 334432 46
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcC
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILE 531 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p 531 (663)
.|+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+ ..++.|+-..+..
T Consensus 151 vD~V~iatp~~~h-~~~~~~al~aG--k~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~ 208 (433)
T 1h6d_A 151 IDAVYIILPNSLH-AEFAIRAFKAG--KHVMCEKPMATSVADCQRMIDAAKAANKKLMIGY 208 (433)
T ss_dssp CCEEEECSCGGGH-HHHHHHHHHTT--CEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCEEEEcCCchhH-HHHHHHHHHCC--CcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 8999999988643 34444444444 256663 33444433 3355677665543
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=90.25 E-value=1.1 Score=38.58 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=61.0
Q ss_pred CCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCC-CcEEEEEcCC-HHHHHHHHHHHHHh-CCCCcE
Q 006034 435 VGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITS-PKAVMIMYTD-KKRTIEAVQRLRLA-FPAIPI 507 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~-a~~vv~~~~d-d~~n~~~~~~~r~~-~~~~~i 507 (663)
...++.++|.|+...+.++ +.|+.+..-+ +..+.++...-.. .|.+++-.+- +......+..+|+. ++++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGAD-GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEES-SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeC-CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 4567888888887654443 3577766532 3333443332233 7877665542 23456677888887 688888
Q ss_pred EEEecC--hhhHHHHHHcCCCeEEcCc
Q 006034 508 YARAQD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 508 ia~~~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
+....+ .+......+.|++.++.-.
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKP 111 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCC
Confidence 777654 4456677889999876654
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=90.25 E-value=0.15 Score=53.29 Aligned_cols=84 Identities=21% Similarity=0.371 Sum_probs=55.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++-|+|+|++|+.+|+.|. ..|.+|++.|++++. +...+.|.... .+-++.+ +++|.|+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~~---~~l~ell-----~~aDiV~ 220 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGR----------AFGMNVLVWGRENSK-ERARADGFAVA---ESKDALF-----EQSDVLS 220 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSHHHH-HHHHHTTCEEC---SSHHHHH-----HHCSEEE
T ss_pred CCEEEEEeECHHHHHHHHHHH----------hCCCEEEEECCCCCH-HHHHhcCceEe---CCHHHHH-----hhCCEEE
Confidence 457999999999999999997 789999999988643 44455555321 1223344 3578888
Q ss_pred EEcCCHH--HHHHHHHHHHHhCCCC
Q 006034 483 IMYTDKK--RTIEAVQRLRLAFPAI 505 (663)
Q Consensus 483 ~~~~dd~--~n~~~~~~~r~~~~~~ 505 (663)
+..+..+ .++.-....+.+.|+.
T Consensus 221 l~~Plt~~t~~li~~~~l~~mk~ga 245 (352)
T 3gg9_A 221 VHLRLNDETRSIITVADLTRMKPTA 245 (352)
T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTTC
T ss_pred EeccCcHHHHHhhCHHHHhhCCCCc
Confidence 8876543 2333334455555553
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=0.38 Score=47.56 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=45.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCC---CCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNT---VGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~---~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~ 471 (663)
+.++|.|. |-+|+.+++.|. + +|++|+++++++++.+.+.+ ....++.+|.+|++.++
T Consensus 7 k~~lVTGas~gIG~~ia~~l~----------~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~ 76 (259)
T 1oaa_A 7 AVCVLTGASRGFGRALAPQLA----------RLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQ 76 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHH----------TTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHH----------HhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHH
Confidence 35666665 789999999997 5 89999999999987665442 12567889999998665
Q ss_pred h
Q 006034 472 S 472 (663)
Q Consensus 472 ~ 472 (663)
+
T Consensus 77 ~ 77 (259)
T 1oaa_A 77 R 77 (259)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.39 Score=48.68 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=51.9
Q ss_pred CcEEEEcCC-c--chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH---h--cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG-Q--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K--LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g-~--~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~---~--~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ . +|+.+++.|. ++|++|++++++++..+.+. + ....++.+|.+|++-.+++
T Consensus 32 k~~lVTGasg~~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 32 KRGLILGVANNRSIAWGIAKAAR----------EAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp CEEEEECCCSSSSHHHHHHHHHH----------HTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHH
Confidence 467888874 4 9999999998 78999999999975433322 2 2456788999999876643
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 102 ~~~~~~g~iD~lVnnA 117 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAI 117 (293)
T ss_dssp HHHHHTSCCSEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 123678776543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=90.14 E-value=0.7 Score=48.14 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCC--C-HH----HHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDAS--R-PA----VLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~--~-~~----~L~~a 473 (663)
..++|+|.|.|.+|+..++.++ ..|. +|+++|.++++.+.+++.|...+. |.. | ++ +.+..
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak----------~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAK----------AMGAAQVVVTDLSATRLSKAKEIGADLVL-QISKESPQEIARKVEGQL 239 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEESCHHHHHHHHHTTCSEEE-ECSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCcccccchHHHHHHHHh
Confidence 3468999999999999999886 6788 899999999999999888865433 333 2 32 22334
Q ss_pred CCCCCcEEEEEcCCHH
Q 006034 474 GITSPKAVMIMYTDKK 489 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~ 489 (663)
+ +.+|.++-+++...
T Consensus 240 ~-~g~D~vid~~g~~~ 254 (356)
T 1pl8_A 240 G-CKPEVTIECTGAEA 254 (356)
T ss_dssp T-SCCSEEEECSCCHH
T ss_pred C-CCCCEEEECCCChH
Confidence 5 67999988887653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=90.13 E-value=0.092 Score=57.28 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=37.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKL 455 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~ 455 (663)
.+|.|+|.|.+|..++..|. +. |++|+++|.|+++++.+.+.
T Consensus 6 mkI~VIG~G~mG~~lA~~La----------~~g~G~~V~~~d~~~~~~~~l~~g 49 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIA----------HMCPEIRVTVVDVNESRINAWNSP 49 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HHCTTSEEEEECSCHHHHHHHTSS
T ss_pred cEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEECCHHHHHHHhCC
Confidence 37999999999999999997 45 89999999999999987653
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.10 E-value=0.17 Score=51.94 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=53.5
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-----HHHH-HhcCCCEEEecCCCHHHHHhcC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----VKES-RKLGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-----~~~~-~~~~~~vi~GD~~~~~~L~~a~ 474 (663)
...+|+|.|. |-+|+.+++.|. +.|++|++++++++. .+.+ ...+..++.||.+|++.++++=
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 82 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLL----------EKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAV 82 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHH
Confidence 4567999986 999999999997 679999999988653 2222 1235778999999998876541
Q ss_pred CC-CCcEEEEEc
Q 006034 475 IT-SPKAVMIMY 485 (663)
Q Consensus 475 i~-~a~~vv~~~ 485 (663)
-+ +.|.||-+.
T Consensus 83 ~~~~~d~Vih~A 94 (335)
T 1rpn_A 83 IKAQPQEVYNLA 94 (335)
T ss_dssp HHHCCSEEEECC
T ss_pred HHcCCCEEEECc
Confidence 11 468777654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.09 E-value=0.21 Score=48.78 Aligned_cols=72 Identities=11% Similarity=0.010 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCC-------CEEEEeCChHHHHHHHh------cCCCEEEecCCCHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-------PFVAFDLNPSVVKESRK------LGFPILYGDASRPAV 469 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~-------~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~ 469 (663)
+.++|.|. |-+|+.+++.|. +.|+ +|++++++++..+.+.+ ....++.+|.+|++.
T Consensus 3 k~vlITGasggiG~~la~~l~----------~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 72 (244)
T 2bd0_A 3 HILLITGAGKGIGRAIALEFA----------RAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMAD 72 (244)
T ss_dssp EEEEEETTTSHHHHHHHHHHH----------HHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHH
Confidence 46888875 789999999997 6787 89999999987765543 125678899999987
Q ss_pred HHhc------CCCCCcEEEEEc
Q 006034 470 LLSA------GITSPKAVMIMY 485 (663)
Q Consensus 470 L~~a------~i~~a~~vv~~~ 485 (663)
++++ ...+.|.+|-..
T Consensus 73 v~~~~~~~~~~~g~id~li~~A 94 (244)
T 2bd0_A 73 VRRLTTHIVERYGHIDCLVNNA 94 (244)
T ss_dssp HHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHHHhCCCCCEEEEcC
Confidence 7653 123678777654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.08 E-value=0.21 Score=50.50 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=53.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCH-HHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRP-AVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~-~~L~~a 473 (663)
.+.++|.|. |-+|+.+++.|. ++|++|+++++|+++.+...+ ....++.+|.+|+ +..+++
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~ 81 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLS----------SNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSL 81 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHH
Confidence 346777786 679999999998 789999999999987655432 1356788999997 544332
Q ss_pred ------CCCCCcEEEEEcC
Q 006034 474 ------GITSPKAVMIMYT 486 (663)
Q Consensus 474 ------~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 82 ~~~~~~~~g~iD~lv~nAg 100 (311)
T 3o26_A 82 ADFIKTHFGKLDILVNNAG 100 (311)
T ss_dssp HHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHhCCCCCEEEECCc
Confidence 1236777766554
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.08 E-value=0.15 Score=51.59 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=51.2
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHH--HHHHHhcCCCEEEecCCCHHHHHhcCCC----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGIT---- 476 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~--~~~~~~~~~~vi~GD~~~~~~L~~a~i~---- 476 (663)
+++|.|. |.+|+.+++.|. +.| ++|++++++++. .+.+. +.. +.||.+|++.++++--+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~----------~~g~~~V~~~~r~~~~~~~~~~~--~~~-~~~d~~~~~~~~~~~~~~~~~ 67 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALN----------DKGITDILVVDNLKDGTKFVNLV--DLN-IADYMDKEDFLIQIMAGEEFG 67 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHH----------TTTCCCEEEEECCSSGGGGHHHH--TSC-CSEEEEHHHHHHHHHTTCCCS
T ss_pred CEEEEcCccHHHHHHHHHHH----------HCCCcEEEEEccCCCCchhhhcC--cce-eccccccHHHHHHHHhccccC
Confidence 4789987 999999999998 678 999999987654 22232 233 78999999888775322
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
++|.||-+.
T Consensus 68 ~~d~vi~~a 76 (310)
T 1eq2_A 68 DVEAIFHEG 76 (310)
T ss_dssp SCCEEEECC
T ss_pred CCcEEEECc
Confidence 689887664
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.5 Score=50.23 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=49.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCC-CCCCEEEEe---CChHHHHHH-HhcCCCE-----------EEec---C-
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNT-VGWPFVAFD---LNPSVVKES-RKLGFPI-----------LYGD---A- 464 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~-~~~~vvvid---~d~~~~~~~-~~~~~~v-----------i~GD---~- 464 (663)
+|.|+|.|.+|..++..|. + .|++|.++| +++++.+.+ ++.+..+ ..+. .
T Consensus 4 kI~ViGaG~~G~~~a~~La----------~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 73 (404)
T 3c7a_A 4 KVCVCGGGNGAHTLSGLAA----------SRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVIT 73 (404)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEE
T ss_pred eEEEECCCHHHHHHHHHHH----------hCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEe
Confidence 6899999999999999996 5 599999999 888888874 4333111 0111 1
Q ss_pred CCHHHHHhcCCCCCcEEEEEcCCHH
Q 006034 465 SRPAVLLSAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 465 ~~~~~L~~a~i~~a~~vv~~~~dd~ 489 (663)
+|.+ + -++++|.|++++....
T Consensus 74 ~~~~---~-a~~~aD~Vilav~~~~ 94 (404)
T 3c7a_A 74 KDPE---I-AISGADVVILTVPAFA 94 (404)
T ss_dssp SCHH---H-HHTTCSEEEECSCGGG
T ss_pred CCHH---H-HhCCCCEEEEeCchHH
Confidence 1222 1 1357999999988764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=90.05 E-value=0.12 Score=52.62 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=35.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC-CCcEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT-SPKAV 481 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~-~a~~v 481 (663)
++++|.|. |-+|+.+++.|. +.|++|++++++++. .+ ++.+|.+|++.++++=-+ +.|.|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQ----------QNNWHAVGCGFRRAR------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------TTTCEEEEEC--------------------------CHHHHHHHCCSEE
T ss_pred CeEEEECCCcHHHHHHHHHHH----------hCCCeEEEEccCCCC------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 47999997 999999999998 789999999987654 12 788999998876553111 46777
Q ss_pred EEEc
Q 006034 482 MIMY 485 (663)
Q Consensus 482 v~~~ 485 (663)
|-+.
T Consensus 65 ih~A 68 (315)
T 2ydy_A 65 VHCA 68 (315)
T ss_dssp EECC
T ss_pred EECC
Confidence 6554
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=0.53 Score=50.61 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=70.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCE-EEEeCChHHHHHHHhc--C--CCE-----------------E
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRKL--G--FPI-----------------L 460 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~v-vvid~d~~~~~~~~~~--~--~~v-----------------i 460 (663)
+-+|-|+|+|++|+..++.+.+ ..+.++ -+.|.|+++++...++ | ... .
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~---------~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~ 93 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVAR---------MQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKI 93 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTT---------SSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCE
T ss_pred ceEEEEECChHHHHHHHHHHhh---------CCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCc
Confidence 3479999999999999999862 456654 4559999998877542 4 111 1
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh-------hhHHHHHHcCCCeEEcC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM-------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~-------~~~~~l~~~Gad~vi~p 531 (663)
.. .+|.+ +++. .+.|+|+++|++.+.-...+..|-+.+. +|++. +.+ +-.+..++.|.-..+..
T Consensus 94 ~v-~~D~eeLL~d---~dIDaVviaTp~p~~H~e~a~~AL~AGK--HVv~~-nk~l~~~eg~eL~~~A~e~Gvvl~~~~ 165 (446)
T 3upl_A 94 AV-TDDNDLILSN---PLIDVIIDATGIPEVGAETGIAAIRNGK--HLVMM-NVEADVTIGPYLKAQADKQGVIYSLGA 165 (446)
T ss_dssp EE-ESCHHHHHTC---TTCCEEEECSCCHHHHHHHHHHHHHTTC--EEEEC-CHHHHHHHHHHHHHHHHHHTCCEEECT
T ss_pred eE-ECCHHHHhcC---CCCCEEEEcCCChHHHHHHHHHHHHcCC--cEEec-CcccCHHHHHHHHHHHHHhCCeeeecC
Confidence 11 23443 4432 4679999999886555666777777763 45542 221 22334455676654444
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=90.01 E-value=1.1 Score=44.39 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=42.6
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHH
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~ 471 (663)
+.++|.|.+ -+|+.+|+.|. ++|.+|++.+++++..+++.+ .....+..|.+|++-.+
T Consensus 7 K~alVTGaa~~~GIG~aiA~~la----------~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 74 (256)
T 4fs3_A 7 KTYVIMGIANKRSIAFGVAKVLD----------QLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVI 74 (256)
T ss_dssp CEEEEECCCSTTCHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHH
Confidence 456777863 59999999998 899999999999877655443 13456677777766543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=90.00 E-value=1.5 Score=39.93 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cCCC---EEEecCCCHHHHHhcC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFP---ILYGDASRPAVLLSAG 474 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~~~---vi~GD~~~~~~L~~a~ 474 (663)
..++++-+|+|. |.......+ ...+.+|+.+|.|++.++.+++ .+.. .+++|..+ .+....
T Consensus 25 ~~~~vldiG~G~-G~~~~~l~~---------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~ 92 (178)
T 3hm2_A 25 PHETLWDIGGGS-GSIAIEWLR---------STPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR--AFDDVP 92 (178)
T ss_dssp TTEEEEEESTTT-THHHHHHHT---------TSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG--GGGGCC
T ss_pred CCCeEEEeCCCC-CHHHHHHHH---------HCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh--hhhccC
Confidence 445899999997 766655553 1247899999999998877764 2332 77777754 344321
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
++.|.+++...-.. ........+.+.|+-.++....
T Consensus 93 -~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 93 -DNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp -SCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEEC
T ss_pred -CCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEee
Confidence 67898775543322 2223344455666655554443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.00 E-value=1.4 Score=47.51 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH--------HHHhcCCC----------EEEecC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK--------ESRKLGFP----------ILYGDA 464 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~--------~~~~~~~~----------vi~GD~ 464 (663)
-++|.|+|.|.+|..+|..|. +.|++|++.|.|+++.. .+.+.|.. -+.. .
T Consensus 54 i~kVaVIGaG~MG~~IA~~la----------~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t 122 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFG----------LAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-T 122 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-E
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-e
Confidence 368999999999999999998 78999999999999532 22233310 0111 1
Q ss_pred CCHHHHHhcCCCCCcEEEEEcCCHH
Q 006034 465 SRPAVLLSAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 465 ~~~~~L~~a~i~~a~~vv~~~~dd~ 489 (663)
+| ++ .+++||.||.+..+|.
T Consensus 123 ~d---l~--al~~aDlVIeAVpe~~ 142 (460)
T 3k6j_A 123 SD---FH--KLSNCDLIVESVIEDM 142 (460)
T ss_dssp SC---GG--GCTTCSEEEECCCSCH
T ss_pred CC---HH--HHccCCEEEEcCCCCH
Confidence 12 22 3789999999998753
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.31 Score=50.28 Aligned_cols=110 Identities=7% Similarity=-0.017 Sum_probs=67.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
-++.|+|+|++|+..++.|.+ ..+.+++ +.|+|+++.+.+.+ .+..-.+.| -++++.+ .+.|+|
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~---------~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~--~~~ll~~---~~~D~V 71 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRL---------AGNGEVVAVSSRTLESAQAFANKYHLPKAYDK--LEDMLAD---ESIDVI 71 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHH---------HCSEEEEEEECSCSSTTCC---CCCCSCEESC--HHHHHTC---TTCCEE
T ss_pred eEEEEEechHHHHHHHHHHHh---------CCCcEEEEEEcCCHHHHHHHHHHcCCCcccCC--HHHHhcC---CCCCEE
Confidence 379999999999999999862 4556666 56999998876665 344423322 2344432 478999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHH----HHHcCCCeEEc
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLD----LKKAGATDAIL 530 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~----l~~~Gad~vi~ 530 (663)
+++++++.. ...+..+-+.+ .++++. +.+.+..+. .++.|.-..+.
T Consensus 72 ~i~tp~~~h-~~~~~~al~aG--k~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~ 124 (329)
T 3evn_A 72 YVATINQDH-YKVAKAALLAG--KHVLVEKPFTLTYDQANELFALAESCNLFLMEA 124 (329)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCcHHH-HHHHHHHHHCC--CeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999988543 44455555554 356663 344444443 35667655443
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=0.26 Score=48.86 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++. +++++..+...+ . ...++.+|.+|++.++++
T Consensus 5 k~vlVTGas~gIG~aia~~l~----------~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 5 KCALVTGSSRGVGKAAAIRLA----------ENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46777776 679999999998 789999997 888887665543 2 356788999999876543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 75 ~~~~~~g~id~lv~nA 90 (258)
T 3oid_A 75 QIDETFGRLDVFVNNA 90 (258)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 113567776554
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=0.26 Score=50.64 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=53.2
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCC---C---CCEEEEeCCh-----HHHHHHH-hcCCCEEEecCCCHHHHH
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV---G---WPFVAFDLNP-----SVVKESR-KLGFPILYGDASRPAVLL 471 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~---~---~~vvvid~d~-----~~~~~~~-~~~~~vi~GD~~~~~~L~ 471 (663)
+++|.|. |-+|+.+++.|. ++ | ++|+++++++ +..+.+. ..+..++.||.+|++.++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~----------~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLL----------AGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLA 71 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHH
T ss_pred eEEEECCccHHHHHHHHHHH----------hhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHH
Confidence 5889985 999999999997 43 7 8999999854 2222221 135678999999999988
Q ss_pred hcCCCCCcEEEEEcC
Q 006034 472 SAGITSPKAVMIMYT 486 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~ 486 (663)
++= +++|.||-+..
T Consensus 72 ~~~-~~~d~Vih~A~ 85 (337)
T 1r6d_A 72 REL-RGVDAIVHFAA 85 (337)
T ss_dssp HHT-TTCCEEEECCS
T ss_pred HHh-cCCCEEEECCC
Confidence 763 78898877654
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.32 Score=45.93 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=52.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcC--CCCCcE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG--ITSPKA 480 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~--i~~a~~ 480 (663)
+++|.|. |.+|+.+++.|. ++ +|+++++++++.+.+.+ .+..++.+|.+|++.++++- ..+.|.
T Consensus 2 ~vlVtGasg~iG~~la~~l~----------~~--~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 69 (207)
T 2yut_A 2 RVLITGATGGLGGAFARALK----------GH--DLLLSGRRAGALAELAREVGARALPADLADELEAKALLEEAGPLDL 69 (207)
T ss_dssp EEEEETTTSHHHHHHHHHTT----------TS--EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHHHHHHHCSEEE
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hC--CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHHHHHhcCCCCE
Confidence 5788876 789999999997 34 99999999988776654 22278889999998776642 126787
Q ss_pred EEEEc
Q 006034 481 VMIMY 485 (663)
Q Consensus 481 vv~~~ 485 (663)
+|-..
T Consensus 70 vi~~a 74 (207)
T 2yut_A 70 LVHAV 74 (207)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77654
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.26 Score=48.79 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=52.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--HHHHHh------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRK------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~~~~~~------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++++++++. .+...+ ....++.+|.+|++.++++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 72 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLA----------ADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAI 72 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 46788876 678999999998 789999999999876 544332 2356788999999876543
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 73 ~~~~~~~g~iD~lv~nA 89 (258)
T 3a28_C 73 DEAAEKLGGFDVLVNNA 89 (258)
T ss_dssp HHHHHHHTCCCEEEECC
T ss_pred HHHHHHhCCCCEEEECC
Confidence 123567766543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.85 E-value=0.56 Score=45.81 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=52.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecC--CCHHHHHhc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDA--SRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~--~~~~~L~~a 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ ....++..|. +|++.++++
T Consensus 15 k~vlITGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 15 RVILVTGAARGIGAAAARAYA----------AHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHH
Confidence 45777776 789999999998 789999999999988766543 2456777887 887765542
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 85 ~~~~~~~~g~id~lv~nA 102 (247)
T 3i1j_A 85 AARVEHEFGRLDGLLHNA 102 (247)
T ss_dssp HHHHHHHHSCCSEEEECC
T ss_pred HHHHHHhCCCCCEEEECC
Confidence 123567766543
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.091 Score=54.19 Aligned_cols=71 Identities=25% Similarity=0.311 Sum_probs=52.6
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH-HHHHh-cCCCEEEecCCCHHHHHhcCCC--CC
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRK-LGFPILYGDASRPAVLLSAGIT--SP 478 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~-~~~~~-~~~~vi~GD~~~~~~L~~a~i~--~a 478 (663)
.+++|.| .|.+|+.+++.|. +.|++|++++++++.. +.+.+ .+..++.||.+|++.++++ ++ +.
T Consensus 22 ~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~ 90 (333)
T 2q1w_A 22 KKVFITGICGQIGSHIAELLL----------ERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQL-IGDLQP 90 (333)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHH-HHHHCC
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHH-HhccCC
Confidence 4689998 4999999999997 6799999999876431 11221 3567899999999887654 22 47
Q ss_pred cEEEEEc
Q 006034 479 KAVMIMY 485 (663)
Q Consensus 479 ~~vv~~~ 485 (663)
|.||-+.
T Consensus 91 D~vih~A 97 (333)
T 2q1w_A 91 DAVVHTA 97 (333)
T ss_dssp SEEEECC
T ss_pred cEEEECc
Confidence 8887654
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.81 E-value=0.23 Score=49.10 Aligned_cols=72 Identities=7% Similarity=0.101 Sum_probs=51.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH----HHH---hcCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESR---KLGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~----~~~---~~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |-+|+.+++.|. +.|++|++++++++..+ .+. .....++.+|.+|++.++++
T Consensus 15 k~vlITGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 84 (265)
T 1h5q_A 15 KTIIVTGGNRGIGLAFTRAVA----------AAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ 84 (265)
T ss_dssp EEEEEETTTSHHHHHHHHHHH----------HTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHH
Confidence 46788875 789999999998 78999999999655432 222 12456789999999876543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 85 ~~~~~~~~id~li~~A 100 (265)
T 1h5q_A 85 QIDADLGPISGLIANA 100 (265)
T ss_dssp HHHHHSCSEEEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 234577666554
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.17 Score=50.63 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=51.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~-- 474 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+.+.+ ....++.+|.+|++.++++=
T Consensus 35 k~vlITGasggIG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 104 (279)
T 3ctm_A 35 KVASVTGSSGGIGWAVAEAYA----------QAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQ 104 (279)
T ss_dssp CEEEETTTTSSHHHHHHHHHH----------HHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHH
Confidence 45677765 789999999998 789999999998765544332 23567889999998776531
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 105 ~~~~~g~id~li~~A 119 (279)
T 3ctm_A 105 QEKDFGTIDVFVANA 119 (279)
T ss_dssp HHHHHSCCSEEEECG
T ss_pred HHHHhCCCCEEEECC
Confidence 13578776543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=0.4 Score=49.22 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=68.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC---hHHHHHHHh-----cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN---PSVVKESRK-----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d---~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|+|.|..|+.++..|. +.|. ++.+++++ +++++.+.+ .+..+..-+..+.+-+.+
T Consensus 148 gk~~lVlGAGGaaraia~~L~----------~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~- 216 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAA----------IEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE- 216 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh-
Confidence 468999999999999999998 6787 79999999 777776654 233344445555322221
Q ss_pred CCCCCcEEEEEcCCHH---HHHHHHHHHHHhCCCCcEEEEecChhhHHH---HHHcCCCeEEcCc
Q 006034 474 GITSPKAVMIMYTDKK---RTIEAVQRLRLAFPAIPIYARAQDMMHLLD---LKKAGATDAILEN 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~---~n~~~~~~~r~~~~~~~iia~~~~~~~~~~---l~~~Gad~vi~p~ 532 (663)
.+.++|.+|-+|+-.. .+.....-...+.++.-++=.+.++...+. .++.|+ .+++--
T Consensus 217 ~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~-~~~~Gl 280 (312)
T 3t4e_A 217 ALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGC-KTIDGY 280 (312)
T ss_dssp HHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHHTTC-EEECHH
T ss_pred hccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCC-eEECcH
Confidence 2446788887776421 110000001122333234445666654444 456677 455544
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.17 Score=48.84 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=30.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
.|+|||.|..|..+|..|. +.|++|+|+|++++
T Consensus 4 dV~IIGaGpaGL~aA~~La----------~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALT----------AAGHQVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHH----------HCCCCEEEEECCCC
Confidence 4999999999999999998 78999999998764
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.59 Score=49.81 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeC----------ChHHHHHHHhc-C-CCEEEecCCCHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDL----------NPSVVKESRKL-G-FPILYGDASRPAV 469 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~----------d~~~~~~~~~~-~-~~vi~GD~~~~~~ 469 (663)
.++++|-|+|++|+.+++.|. +.|.+|+ +.|. |.+.+.++.+. + ..-+ ..+..+.
T Consensus 218 gk~vaVqG~GnVG~~~a~~L~----------~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~--~~~~~e~ 285 (419)
T 3aoe_E 218 GARVVVQGLGQVGAAVALHAE----------RLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRL--DLAPEEV 285 (419)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCC--CBCTTTG
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCccee--eccchhh
Confidence 357999999999999999997 7899998 8898 88887776652 2 1000 2233455
Q ss_pred HHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC----hhhHHHHHHcCCCeEEcCch
Q 006034 470 LLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD----MMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~----~~~~~~l~~~Gad~vi~p~~ 533 (663)
|. -++|.++=+...++.| ...++++ ++++|+..-| ++..+.|++.|+ .+.|..
T Consensus 286 ~~----~~~DVliP~A~~n~i~---~~~A~~l--~ak~V~EgAN~p~t~~A~~~L~~~Gi--~~~PD~ 342 (419)
T 3aoe_E 286 FG----LEAEVLVLAAREGALD---GDRARQV--QAQAVVEVANFGLNPEAEAYLLGKGA--LVVPDL 342 (419)
T ss_dssp GG----SSCSEEEECSCTTCBC---HHHHTTC--CCSEEEECSTTCBCHHHHHHHHHHTC--EEECHH
T ss_pred hc----cCceEEEecccccccc---cchHhhC--CceEEEECCCCcCCHHHHHHHHHCCC--EEECHH
Confidence 53 3789777666554333 3466666 4577776543 578889999997 566763
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=89.69 E-value=0.34 Score=52.74 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=38.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCC-CC-CEEEEeCChH----HHHHHHh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GW-PFVAFDLNPS----VVKESRK 454 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~-~vvvid~d~~----~~~~~~~ 454 (663)
..+|.|+|.|.+|..+|..|. +. |+ +|+++|.|++ +++.+.+
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la----------~~~G~~~V~~~D~~~~~~~~kv~~l~~ 65 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFA----------DAPCFEKVLGFQRNSKSSGYKIEMLNR 65 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHH----------HSTTCCEEEEECCCCTTTTTHHHHHTT
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HhCCCCeEEEEECChhHhHHHHHHHHh
Confidence 347999999999999999998 67 99 9999999999 9988876
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.3 Score=48.08 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=50.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCCh--HHHHHHHhc----CCCEEEecCCCH-HHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP--SVVKESRKL----GFPILYGDASRP-AVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~--~~~~~~~~~----~~~vi~GD~~~~-~~L~~a- 473 (663)
++++|.|. |-+|+.+++.|. ++|++ |+++++++ +..+.+.+. ...++.+|.+|+ +.++++
T Consensus 6 k~vlVtGas~gIG~~~a~~l~----------~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T 1sby_A 6 KNVIFVAALGGIGLDTSRELV----------KRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLL 75 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHH
Confidence 46888875 779999999998 78997 89999886 444555432 356788999997 544332
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~~~~~~g~id~lv~~A 92 (254)
T 1sby_A 76 KKIFDQLKTVDILINGA 92 (254)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHhcCCCCEEEECC
Confidence 123678776544
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.36 Score=48.08 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=53.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. +-+|+.+++.|. ++|++|+++++|++..+...+ ....++.+|.+|++-.+++
T Consensus 21 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 90 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFA----------AAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELAR 90 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 45677775 679999999998 789999999999988665432 2466788999998866543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 91 ~~~~~~g~id~lv~nA 106 (266)
T 4egf_A 91 RAAEAFGGLDVLVNNA 106 (266)
T ss_dssp HHHHHHTSCSEEEEEC
T ss_pred HHHHHcCCCCEEEECC
Confidence 123667776654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.24 Score=49.69 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++.++++++.+...+ . ...++.+|.+|++-++++
T Consensus 27 k~~lVTGas~gIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 96 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLA----------VAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFAR 96 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 34666665 679999999998 789999999999988665442 2 355678999999877653
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 97 ~~~~~g~iD~lv~nA 111 (271)
T 4ibo_A 97 LDEQGIDVDILVNNA 111 (271)
T ss_dssp HHHHTCCCCEEEECC
T ss_pred HHHHCCCCCEEEECC
Confidence 123577776554
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=89.67 E-value=0.87 Score=46.45 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=79.9
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeC--ChHHHHH----HHhc---C-CCEEEecCCCHHHHH
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDL--NPSVVKE----SRKL---G-FPILYGDASRPAVLL 471 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~--d~~~~~~----~~~~---~-~~vi~GD~~~~~~L~ 471 (663)
+|.|+| .|.+|+.++..|. ..+ .+++++|. ++++.+. +.+. . ..-+.++ +.+
T Consensus 2 KI~IiGAaG~vG~~l~~~L~----------~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~--~~~--- 66 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIA----------LRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG--GYE--- 66 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC--CGG---
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeC--CHH---
Confidence 589999 9999999999886 233 36899999 8876432 2221 1 1123332 222
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHH-HHcCCC--eEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDL-KKAGAT--DAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~--~~l-~~~Gad--~vi~p 531 (663)
.+++||.||.+.+- | ..|+. ++..+++.+|+..++. ..||.+. ..+ +..|.+ +|+--
T Consensus 67 --a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv-~SNPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 67 --DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLT-TSNPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp --GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEE-CCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred --HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEE-eCChHHHHHHHHHHHcCCCHHHeeec
Confidence 26789988877642 2 34444 4455666788866665 5666543 333 344554 67766
Q ss_pred -chHHHHHHHHHHHHhcCCCHHHH
Q 006034 532 -NAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 532 -~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
...-..++-..+-+.+++++..+
T Consensus 144 gt~Ld~~r~~~~la~~l~v~~~~v 167 (303)
T 1o6z_A 144 GGRLDSARFRYVLSEEFDAPVQNV 167 (303)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred ccchhHHHHHHHHHHHhCcCHHHe
Confidence 44445566666666677766443
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.66 E-value=0.18 Score=49.71 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=50.9
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEe-CChHHHH----HHHh--cCCCEEEecCCCHHHHHh
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFD-LNPSVVK----ESRK--LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid-~d~~~~~----~~~~--~~~~vi~GD~~~~~~L~~ 472 (663)
...++++|.|. |-+|+.+++.|. ++|++|++++ +++++.+ ...+ ....++.+|.+|++.+++
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~----------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 80 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLH----------KDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQ 80 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHH----------HTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHH
Confidence 34566777775 678999999998 7899999988 5544432 2333 246788999999886654
Q ss_pred c------CCCCCcEEEEEc
Q 006034 473 A------GITSPKAVMIMY 485 (663)
Q Consensus 473 a------~i~~a~~vv~~~ 485 (663)
+ ...+.|.+|-..
T Consensus 81 ~~~~~~~~~g~id~lv~~A 99 (256)
T 3ezl_A 81 AFDKVKAEVGEIDVLVNNA 99 (256)
T ss_dssp HHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECC
Confidence 3 223667776554
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=89.62 E-value=0.41 Score=52.50 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..+|+.++|.|..|.. +|+.|. +.|++|.+.|.++. ..+.+++.|..+..| .+++. +.++|
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~~~-----~~~~d 83 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLA----------NEGYQISGSDLAPNSVTQHLTALGAQIYFH--HRPEN-----VLDAS 83 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHH----------HTTCEEEEECSSCCHHHHHHHHTTCEEESS--CCGGG-----GTTCS
T ss_pred cCCEEEEEEEcHhhHHHHHHHHH----------hCCCeEEEEECCCCHHHHHHHHCCCEEECC--CCHHH-----cCCCC
Confidence 3478999999999996 899997 89999999997654 456678889998887 34443 35689
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.||....=+..|-. ...||+.+ ++++.+
T Consensus 84 ~vV~Spgi~~~~p~-~~~a~~~g--i~v~~~ 111 (494)
T 4hv4_A 84 VVVVSTAISADNPE-IVAAREAR--IPVIRR 111 (494)
T ss_dssp EEEECTTSCTTCHH-HHHHHHTT--CCEEEH
T ss_pred EEEECCCCCCCCHH-HHHHHHCC--CCEEcH
Confidence 88766544444443 34566654 456554
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=89.61 E-value=0.53 Score=49.25 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=70.6
Q ss_pred CcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
-+|.|+|+|++|+. .++.|.+ .++.+++ +.|.|+++.+.+.+. +..-.+. +-+++|++. +.|+
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~--~~~~ll~~~---~vD~ 71 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQ---------MQDIRIVAACDSDLERARRVHRFISDIPVLD--NVPAMLNQV---PLDA 71 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHT---------CTTEEEEEEECSSHHHHGGGGGTSCSCCEES--SHHHHHHHS---CCSE
T ss_pred ceEEEECCCHHHHHHHHHHHHh---------CCCcEEEEEEcCCHHHHHHHHHhcCCCcccC--CHHHHhcCC---CCCE
Confidence 37999999999995 8898872 4577777 779999999887764 2222232 224556553 4599
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHH----HHHHcCCCeEEcC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLL----DLKKAGATDAILE 531 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~----~l~~~Gad~vi~p 531 (663)
|+++++++. -...+..+-+.+ .+|++. +.+.+..+ ..++.|.-..+..
T Consensus 72 V~i~tp~~~-H~~~~~~al~aG--khVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~ 126 (359)
T 3m2t_A 72 VVMAGPPQL-HFEMGLLAMSKG--VNVFVEKPPCATLEELETLIDAARRSDVVSGVGM 126 (359)
T ss_dssp EEECSCHHH-HHHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred EEEcCCcHH-HHHHHHHHHHCC--CeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 999998753 344455555554 356662 33444433 3455677655544
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=89.54 E-value=0.041 Score=56.14 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=57.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCC-C-EEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-P-ILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~-~-vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+|.|+|.|.+|..++..|. +.|++|.+++++++..+...+.|. + -+.-|. .++-.+++|.+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~D~v 66 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQ----------QSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKG------YEDVTNTFDVI 66 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HHCTTCEEEESSCEEEEEESSTTSCCEEEEEEE------GGGCCSCEEEE
T ss_pred cEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeccCcEEEEecCCeeccceecCc------hHhcCCCCCEE
Confidence 36999999999999999997 678999999999765432222221 0 111111 11112689999
Q ss_pred EEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChh
Q 006034 482 MIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMM 515 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~ 515 (663)
++++..... -.++..++. +.++..|+...|--.
T Consensus 67 ilavk~~~~-~~~l~~l~~~l~~~~~iv~~~nGi~ 100 (294)
T 3g17_A 67 IIAVKTHQL-DAVIPHLTYLAHEDTLIILAQNGYG 100 (294)
T ss_dssp EECSCGGGH-HHHGGGHHHHEEEEEEEEECCSSCC
T ss_pred EEeCCccCH-HHHHHHHHHhhCCCCEEEEeccCcc
Confidence 888876432 223333333 344444555555433
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.54 E-value=0.41 Score=50.08 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=69.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCC-CEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGF-PILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~-~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
-+|.|+|+|.+|+..++.|.+ +..+.+++ +.|.|+++.+.+.+ .+. .-.+.| -++.+++ .+.|+
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~--------~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~--~~~ll~~---~~~D~ 90 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLAN--------TVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYND--YHDLIND---KDVEV 90 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------TCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESS--HHHHHHC---TTCCE
T ss_pred eeEEEECCcHHHHHHHHHHHh--------hCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCC--HHHHhcC---CCCCE
Confidence 479999999999999998861 14567766 68999999887765 452 223322 2344443 46799
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCe
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATD 527 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~ 527 (663)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|...
T Consensus 91 V~i~tp~~~h-~~~~~~al~aG--k~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 91 VIITASNEAH-ADVAVAALNAN--KYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred EEEcCCcHHH-HHHHHHHHHCC--CCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 9999988643 44455555554 357763 3454444433 5567654
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.13 Score=54.01 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-----HHHHHh------c-CCCEEEecCCCHHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----VKESRK------L-GFPILYGDASRPAVL 470 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-----~~~~~~------~-~~~vi~GD~~~~~~L 470 (663)
++|+|.|. |-+|+.+++.|. +.|++|++++++++. .+.+.+ . +..++.||.+|++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 98 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLL----------GKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSL 98 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHH----------HCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHH
Confidence 57999997 999999999997 679999999988654 222211 1 567889999999877
Q ss_pred HhcCCC-CCcEEEEEcC
Q 006034 471 LSAGIT-SPKAVMIMYT 486 (663)
Q Consensus 471 ~~a~i~-~a~~vv~~~~ 486 (663)
+++=-+ +.|.||-+..
T Consensus 99 ~~~~~~~~~d~Vih~A~ 115 (381)
T 1n7h_A 99 RRWIDVIKPDEVYNLAA 115 (381)
T ss_dssp HHHHHHHCCSEEEECCS
T ss_pred HHHHHhcCCCEEEECCc
Confidence 654111 4687776543
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.3 Score=51.41 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=53.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++|+|+|.|..|+.+++.++ +.|++++++|.+++... .......+..|.+|.+.+.+.- ++.|.++.
T Consensus 2 ~~Ililg~g~~g~~~~~a~~----------~~G~~v~~~~~~~~~~~--~~~~~~~~~~~~~d~~~l~~~~-~~~d~v~~ 68 (380)
T 3ax6_A 2 KKIGIIGGGQLGKMMTLEAK----------KMGFYVIVLDPTPRSPA--GQVADEQIVAGFFDSERIEDLV-KGSDVTTY 68 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSTTCTT--GGGSSEEEECCTTCHHHHHHHH-HTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCch--hhhCceEEECCCCCHHHHHHHH-hcCCEEEe
Confidence 46999999999999999997 78999999998776421 1122346678888988877654 67887765
Q ss_pred EcCC
Q 006034 484 MYTD 487 (663)
Q Consensus 484 ~~~d 487 (663)
..++
T Consensus 69 ~~e~ 72 (380)
T 3ax6_A 69 DLEH 72 (380)
T ss_dssp SCSC
T ss_pred cccC
Confidence 4443
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=89.50 E-value=0.23 Score=49.19 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=52.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHh-------cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRK-------LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~-------~~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++. .+.+.+ ....++.+|.+|++.++++=
T Consensus 5 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 74 (260)
T 1x1t_A 5 KVAVVTGSTSGIGLGIATALA----------AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLV 74 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHH
Confidence 45777775 689999999998 789999999999876 554432 13456789999998765431
Q ss_pred ------CCCCcEEEEEc
Q 006034 475 ------ITSPKAVMIMY 485 (663)
Q Consensus 475 ------i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 75 ~~~~~~~g~iD~lv~~A 91 (260)
T 1x1t_A 75 DNAVRQMGRIDILVNNA 91 (260)
T ss_dssp HHHHHHHSCCSEEEECC
T ss_pred HHHHHhcCCCCEEEECC
Confidence 13567776543
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=89.47 E-value=0.52 Score=48.35 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=60.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHH-HHHH-HhcCCCEEEecCCC-HHHHHhcCCCCCc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSV-VKES-RKLGFPILYGDASR-PAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~-~~~~-~~~~~~vi~GD~~~-~~~L~~a~i~~a~ 479 (663)
-+|.|+|+|++|+.+++.+.+ +..+.+ +.+.|.|+++ .+.. ++.+..... .+ ++++++.+-.+.|
T Consensus 5 irVaIIG~G~iG~~~~~~l~~--------~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~---~~~e~ll~~~~~~~iD 73 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLR--------NAKYLEMGAMVGIDAASDGLARAQRMGVTTTY---AGVEGLIKLPEFADID 73 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------HCSSEEEEEEECSCTTCHHHHHHHHTTCCEES---SHHHHHHHSGGGGGEE
T ss_pred CEEEEEcCcHHHHHHHHHHHh--------hCcCeEEEEEEeCChhhhHHHHHHHcCCCccc---CCHHHHHhccCCCCCc
Confidence 479999999999999999951 124444 4567999887 4444 345554332 23 3445544446789
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.|+.+++. +.....+..+.+..+..+|+.
T Consensus 74 vV~~atp~-~~h~~~a~~al~a~~Gk~Vi~ 102 (312)
T 1nvm_B 74 FVFDATSA-SAHVQNEALLRQAKPGIRLID 102 (312)
T ss_dssp EEEECSCH-HHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEECCCh-HHHHHHHHHHHHhCCCCEEEE
Confidence 99999994 455666666666622234554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=89.47 E-value=0.73 Score=47.59 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH---HHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA---VLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~---~L~~a~i~~a 478 (663)
..++++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |..+++ .+++.+ ..+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~-g~~ 233 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYAR----------AMGLRVAAVDIDDAKLNLARRLGAEVAV-NARDTDPAAWLQKEI-GGA 233 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHH-SSE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHcCCCEEE-eCCCcCHHHHHHHhC-CCC
Confidence 4568999999999999999887 6889999999999999999988876543 344333 233321 268
Q ss_pred cEEEEEcCCHH
Q 006034 479 KAVMIMYTDKK 489 (663)
Q Consensus 479 ~~vv~~~~dd~ 489 (663)
|.++-++...+
T Consensus 234 d~vid~~g~~~ 244 (340)
T 3s2e_A 234 HGVLVTAVSPK 244 (340)
T ss_dssp EEEEESSCCHH
T ss_pred CEEEEeCCCHH
Confidence 88877766543
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=0.16 Score=51.69 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=50.6
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCC--CCcE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGIT--SPKA 480 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~--~a~~ 480 (663)
+++|.|. |-+|+.+++.|. +.|++|++++++++ ..+.+ ..+..++.+|.+|++.++++ ++ +.|.
T Consensus 2 ~vlVTGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~ 69 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLL----------ARGLEVAVLDNLATGKRENV-PKGVPFFRVDLRDKEGVERA-FREFRPTH 69 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------TTTCEEEEECCCSSCCGGGS-CTTCCEECCCTTCHHHHHHH-HHHHCCSE
T ss_pred EEEEEeCCcHHHHHHHHHHH----------HCCCEEEEEECCCcCchhhc-ccCeEEEECCCCCHHHHHHH-HHhcCCCE
Confidence 5889987 999999999998 78999999998432 21111 13577899999999877654 22 5677
Q ss_pred EEEEc
Q 006034 481 VMIMY 485 (663)
Q Consensus 481 vv~~~ 485 (663)
++-+.
T Consensus 70 vi~~a 74 (311)
T 2p5y_A 70 VSHQA 74 (311)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 76554
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=89.39 E-value=0.42 Score=48.54 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~ 479 (663)
..++++|.|. |.+|+..++.++ ..|.+|++++.++++.+.+++.|...+. |..+ ++..++. +.+|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~----------~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~--~~~d 191 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVAR----------AMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAW--GGLD 191 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHH----------HTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHT--TSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhcCCCEEE-ECCcchhHHHHh--cCce
Confidence 3468999998 999999999887 6889999999999998888887766543 5555 5555554 6789
Q ss_pred EEEEEcCC
Q 006034 480 AVMIMYTD 487 (663)
Q Consensus 480 ~vv~~~~d 487 (663)
.++- .+.
T Consensus 192 ~vid-~g~ 198 (302)
T 1iz0_A 192 LVLE-VRG 198 (302)
T ss_dssp EEEE-CSC
T ss_pred EEEE-CCH
Confidence 8887 776
|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=89.39 E-value=1.2 Score=38.55 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCCCEEEEeCChHHHHHHH----hcC-CCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEE
Q 006034 435 VGWPFVAFDLNPSVVKESR----KLG-FPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~----~~~-~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~ii 508 (663)
...++.++|.|+...+.++ +.| +.+..-+ +-.+.++...-.+.|.+++-.+- +..-...+..+|+.+|+++++
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~-~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 91 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSE-TDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLI 91 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEEC-GGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEec-cHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEE
Confidence 3457899999888755544 356 6665432 33456666666778988776543 334566778889988888888
Q ss_pred EEecC--hhhHHHHHHcCCCeEEcCc
Q 006034 509 ARAQD--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 509 a~~~~--~~~~~~l~~~Gad~vi~p~ 532 (663)
....+ .+......+.|++.++...
T Consensus 92 ~~s~~~~~~~~~~~~~~g~~~~l~KP 117 (135)
T 3snk_A 92 AVSDELTSEQTRVLVRMNASDWLHKP 117 (135)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESS
T ss_pred EEeCCCCHHHHHHHHHcCcHhhccCC
Confidence 76664 4566677889999876654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=89.38 E-value=0.18 Score=51.16 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=50.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CC----C-EEEecCCCHHHHHhcCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GF----P-ILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~----~-vi~GD~~~~~~L~~a~i~ 476 (663)
.++++|+|.|.+|+.+++.|. +.| +|++.++++++.+.+.+. +. . .+..|.+|. +...+
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~----------~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~----~~~~~ 192 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELA----------KDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL----DVDLD 192 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHT----------SSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT----TCCCT
T ss_pred CCEEEEECchHHHHHHHHHHH----------HCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH----HHhhC
Confidence 357999999999999999997 778 999999999887766532 00 0 011233331 34567
Q ss_pred CCcEEEEEcCCH
Q 006034 477 SPKAVMIMYTDK 488 (663)
Q Consensus 477 ~a~~vv~~~~dd 488 (663)
++|.+|.+++..
T Consensus 193 ~~DilVn~ag~~ 204 (287)
T 1nvt_A 193 GVDIIINATPIG 204 (287)
T ss_dssp TCCEEEECSCTT
T ss_pred CCCEEEECCCCC
Confidence 899998887753
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.96 Score=39.16 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=61.7
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC--HHHHHHHHHHHHHhCCCCcE
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD--KKRTIEAVQRLRLAFPAIPI 507 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d--d~~n~~~~~~~r~~~~~~~i 507 (663)
....++.++|.|+...+.+. +.|+.+..--.+-.+.++...-.+.|.+++-.+- +......+..+|+. +++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i 85 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPI 85 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence 34567889998887655443 3577765312223444444433568888777553 23456677778877 88888
Q ss_pred EEEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 508 YARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 508 ia~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
++...+. +......+.|++.++.-.
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp 112 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKP 112 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEES
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCC
Confidence 8776644 445577789999876543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=0.16 Score=51.68 Aligned_cols=67 Identities=21% Similarity=0.186 Sum_probs=51.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC-CCCcE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI-TSPKA 480 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i-~~a~~ 480 (663)
+++|.|. |-+|+.+++.|. +. |++|++++++++..+ +..++.+|.+|++.++++=- .+.|.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~~~d~ 65 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLA----------EKYGKKNVIASDIVQRDTG-----GIKFITLDVSNRDEIDRAVEKYSIDA 65 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHH----------HHHCGGGEEEEESSCCCCT-----TCCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CEEEEcCCcHHHHHHHHHHH----------HhcCCCEEEEecCCCcccc-----CceEEEecCCCHHHHHHHHhhcCCcE
Confidence 4788985 999999999997 45 789999998765422 57889999999988766411 16788
Q ss_pred EEEEcC
Q 006034 481 VMIMYT 486 (663)
Q Consensus 481 vv~~~~ 486 (663)
||-+..
T Consensus 66 vih~a~ 71 (317)
T 3ajr_A 66 IFHLAG 71 (317)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 876553
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=0.91 Score=46.66 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=55.8
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HH---HHHhcCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PA---VLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~---~L~~a~i~ 476 (663)
..++++|.|. |.+|+.+++.+. ..|.+|+++|.++++.+.+++.+...+ -|.++ ++ .+++..-.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~----------~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAK----------LKGCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHHCTT
T ss_pred CCCEEEEecCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhcCCcEE-EecCCHHHHHHHHHHHhCC
Confidence 3468999998 999999999997 789999999999999888877665543 36665 32 33332225
Q ss_pred CCcEEEEEcCC
Q 006034 477 SPKAVMIMYTD 487 (663)
Q Consensus 477 ~a~~vv~~~~d 487 (663)
..|.++-+.+.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1v3u_A 214 GYDCYFDNVGG 224 (333)
T ss_dssp CEEEEEESSCH
T ss_pred CCeEEEECCCh
Confidence 78988777765
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=0.65 Score=48.40 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=57.1
Q ss_pred CcEEEEcCCcchHHH-HHHh-cccccCCCCCCCCCCC-EEEEeCChH---HHHHHHhcCCCEEEecCCCHHH--HHhcCC
Q 006034 404 EPVVIVGFGQMGQVL-ANLL-SAPLASGSDGNTVGWP-FVAFDLNPS---VVKESRKLGFPILYGDASRPAV--LLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~l-a~~L-~~~~~~~~~~~~~~~~-vvvid~d~~---~~~~~~~~~~~vi~GD~~~~~~--L~~a~i 475 (663)
++|+|.|.|.+|... ++.+ + ..|.+ |+++|.+++ +.+.+++.|...+ |..+++. +++. -
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k----------~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~i~~~-~ 240 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVD----------DKGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPDV-Y 240 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHC----------TTCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTTSCGGGHHHH-S
T ss_pred CEEEEECCCHHHHHHHHHHHHH----------HcCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCccCHHHHHHh-C
Confidence 689999999999999 9988 7 77887 999999998 8898888887766 6655332 4444 2
Q ss_pred CCCcEEEEEcCCH
Q 006034 476 TSPKAVMIMYTDK 488 (663)
Q Consensus 476 ~~a~~vv~~~~dd 488 (663)
..+|.++-+++.+
T Consensus 241 gg~Dvvid~~g~~ 253 (357)
T 2b5w_A 241 EQMDFIYEATGFP 253 (357)
T ss_dssp CCEEEEEECSCCH
T ss_pred CCCCEEEECCCCh
Confidence 3789888888775
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.26 E-value=0.64 Score=48.49 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=57.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHhcCCCEEEecCCCH--HHHHhc-CCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKLGFPILYGDASRP--AVLLSA-GITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~--~~L~~a-~i~~ 477 (663)
..++|+|.|.|.+|...++.++ .. |.+|+++|.++++.+.+++.|...+. |..++ +.+++. +=..
T Consensus 186 ~g~~VlV~GaG~vG~~avqlak----------~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~v~~~~~g~g 254 (359)
T 1h2b_A 186 PGAYVAIVGVGGLGHIAVQLLK----------VMTPATVIALDVKEEKLKLAERLGADHVV-DARRDPVKQVMELTRGRG 254 (359)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HHCCCEEEEEESSHHHHHHHHHTTCSEEE-ETTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCHHHHHHHHHhCCCEEE-eccchHHHHHHHHhCCCC
Confidence 3468999999999999999886 56 88999999999999999988866543 44443 334443 2236
Q ss_pred CcEEEEEcCCH
Q 006034 478 PKAVMIMYTDK 488 (663)
Q Consensus 478 a~~vv~~~~dd 488 (663)
+|.++=+++.+
T Consensus 255 ~Dvvid~~G~~ 265 (359)
T 1h2b_A 255 VNVAMDFVGSQ 265 (359)
T ss_dssp EEEEEESSCCH
T ss_pred CcEEEECCCCc
Confidence 89888888775
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.32 Score=49.00 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cC-CCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LG-FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~-~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ .. ..++.+|.+|++-.+++
T Consensus 34 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALS----------AEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 45677775 679999999998 789999999999987665543 12 36789999999876543
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 104 ~~~~~~g~iD~lvnnA 119 (281)
T 4dry_A 104 AVRAEFARLDLLVNNA 119 (281)
T ss_dssp HHHHHHSCCSEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 113557666543
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=89.24 E-value=2.1 Score=37.80 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=62.5
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEE--ecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHh--CCC
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILY--GDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLA--FPA 504 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~--GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~--~~~ 504 (663)
+++.+|.+||.|+...+.++ +.|+.++. .|+ .+.++...-.+.|.++.-..=. ..=...+...|+. .++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g--~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDG--LTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSH--HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCH--HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 56788999999998754443 47776442 233 3445544445789776655432 3345677777764 467
Q ss_pred CcEEEEec--ChhhHHHHHHcCCCeEEcCc
Q 006034 505 IPIYARAQ--DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 505 ~~iia~~~--~~~~~~~l~~~Gad~vi~p~ 532 (663)
++||.... +.++.....++|+|..+.-.
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP 117 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKP 117 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESS
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECC
Confidence 78776554 45666778899999776554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=1 Score=45.56 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh------------------HHHHHHHh------cCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP------------------SVVKESRK------LGF 457 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~------------------~~~~~~~~------~~~ 457 (663)
+.||+|+|.|-.|..+++.|. ..|. ++.++|.|. .+++.+++ ...
T Consensus 36 ~~~VlVvGaGGlGs~va~~La----------~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v 105 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLT----------RCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDV 105 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTS
T ss_pred CCeEEEECcCHHHHHHHHHHH----------HcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCc
Confidence 458999999999999999997 5564 799999887 44444432 122
Q ss_pred --CEEEecCCCHHHHHhc-------C---CCCCcEEEEEcCCHHHHHHHHHHHHHhCC
Q 006034 458 --PILYGDASRPAVLLSA-------G---ITSPKAVMIMYTDKKRTIEAVQRLRLAFP 503 (663)
Q Consensus 458 --~vi~GD~~~~~~L~~a-------~---i~~a~~vv~~~~dd~~n~~~~~~~r~~~~ 503 (663)
..+..+.++++.+.+. . .+++|.||-++++-+.-..+-..+++.+.
T Consensus 106 ~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~ 163 (292)
T 3h8v_A 106 LFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQ 163 (292)
T ss_dssp EEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred EEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCC
Confidence 2344455554444321 1 26899998888887776777777887763
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=0.75 Score=42.39 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a 473 (663)
..++++-+|+|. |....... +.+.+|+.+|.|++.++.+++ ....++.+|..+ .+.+
T Consensus 33 ~~~~vldiG~G~-G~~~~~l~-----------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~- 97 (192)
T 1l3i_A 33 KNDVAVDVGCGT-GGVTLELA-----------GRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--ALCK- 97 (192)
T ss_dssp TTCEEEEESCTT-SHHHHHHH-----------TTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--HHTT-
T ss_pred CCCEEEEECCCC-CHHHHHHH-----------HhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--hccc-
Confidence 456899999998 66655544 334789999999998877765 245677777654 2332
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.++.|.+++........-.+....+.+.|+-.++.
T Consensus 98 -~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~ 132 (192)
T 1l3i_A 98 -IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIV 132 (192)
T ss_dssp -SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEE
T ss_pred -CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEE
Confidence 24789776554322222223333444555534444
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=0.6 Score=48.44 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=56.7
Q ss_pred CCCcEEEEcCC-cchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHH---HHhcCC-
Q 006034 402 GSEPVVIVGFG-QMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAV---LLSAGI- 475 (663)
Q Consensus 402 ~~~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~---L~~a~i- 475 (663)
..++++|.|.| .+|+.+++.+. .. |.+|+++|.++++.+.+++.+...+. |.++++. +++..-
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~----------~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 238 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAK----------AVSGATIIGVDVREEAVEAAKRAGADYVI-NASMQDPLAEIRRITES 238 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHH----------HHTCCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTT
T ss_pred CCCEEEEECCCccHHHHHHHHHH----------HcCCCeEEEEcCCHHHHHHHHHhCCCEEe-cCCCccHHHHHHHHhcC
Confidence 34689999998 99999999997 66 89999999999998888877765433 5555443 333322
Q ss_pred CCCcEEEEEcCCH
Q 006034 476 TSPKAVMIMYTDK 488 (663)
Q Consensus 476 ~~a~~vv~~~~dd 488 (663)
...|.++-+.+.+
T Consensus 239 ~~~d~vi~~~g~~ 251 (347)
T 1jvb_A 239 KGVDAVIDLNNSE 251 (347)
T ss_dssp SCEEEEEESCCCH
T ss_pred CCceEEEECCCCH
Confidence 4789888777764
|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=89.17 E-value=0.54 Score=39.05 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=59.9
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhC--CCCcEEE
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAF--PAIPIYA 509 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~--~~~~iia 509 (663)
.++.++|.|+...+.+. +.|+.+..-+ +..+.++...-.+.|.+++-.+-+ ......+...|+.. +++++++
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLV-DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEES-CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEec-CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 45788888887654443 3567665432 334444444334678777765432 33456777788875 7788888
Q ss_pred EecChhhHHHHHHcCCCeEEcCc
Q 006034 510 RAQDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 510 ~~~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.....+.. ...+.|++.++...
T Consensus 81 ~~~~~~~~-~~~~~g~~~~l~kp 102 (119)
T 2j48_A 81 FLGEPPVD-PLLTAQASAILSKP 102 (119)
T ss_dssp EESSCCSS-HHHHHHCSEECSSC
T ss_pred EeCCCCch-hhhhcCHHHhccCC
Confidence 77665555 77889999876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 663 | ||||
| d1id1a_ | 153 | c.2.1.9 (A:) Rck domain from putative potassium ch | 4e-12 | |
| d2hmva1 | 134 | c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T | 4e-12 | |
| d2fy8a1 | 129 | c.2.1.9 (A:116-244) Potassium channel-related prot | 6e-12 | |
| d1lssa_ | 132 | c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus ja | 3e-06 |
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Score = 62.6 bits (151), Expect = 4e-12
Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 7/150 (4%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
++ G + L+ G V + + +++ ++ GD++
Sbjct: 6 FIVCGHSILAINTILQLNQ------RGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSN 59
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 525
+VL AGI +A++ + + V + + D +L +K
Sbjct: 60 DSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHP 119
Query: 526 TDAILENAETSLQLGSKLLKGFGVMSDDVT 555
+ S L +++L G + +D +
Sbjct: 120 DIILSPQLFGSEIL-ARVLNGEEINNDMLV 148
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Score = 61.9 bits (149), Expect = 4e-12
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
++G G+ G + L +G +A D+N V + +A+
Sbjct: 3 FAVIGLGRFGGSIVKELHR----------MGHEVLAVDINEEKVNAYASYATHAVIANAT 52
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 525
LLS GI + + V++ + L I+ +AQ+ H L+K GA
Sbjct: 53 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGA 112
Query: 526 TDAILENAETSLQLGSKLL 544
I + +++ L
Sbjct: 113 DRIIHPEKDMGVKIAQSLS 131
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Score = 61.0 bits (147), Expect = 6e-12
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 465
VVI G+ + L G + +V K+ + G ++GD +
Sbjct: 3 VVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANFVHGDPT 50
Query: 466 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 525
R + L A + +AV++ TI + +R ++ I A A+ ++ L+ AGA
Sbjct: 51 RVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGA 110
Query: 526 TDAILENAETSLQLGSKL 543
I + + +
Sbjct: 111 DQVISPFVISGRLMSRSI 128
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 44.9 bits (105), Expect = 3e-06
Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 12/141 (8%)
Query: 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-PILYGDA 464
++I G G++G LA LS G V D++ + K++ ++ GD
Sbjct: 3 IIIAGIGRVGYTLAKSLSEK----------GHDIVLIDIDKDICKKASAEIDALVINGDC 52
Query: 465 SRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAG 524
++ L AGI + + ++ + + + ++ AR ++ + ++ G
Sbjct: 53 TKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAK-SYGINKTIARISEIEYKDVFERLG 111
Query: 525 ATDAILENAETSLQLGSKLLK 545
+ + + + +
Sbjct: 112 VDVVVSPELIAANYIEKLIER 132
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 663 | |||
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 99.92 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 99.92 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 99.92 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 99.91 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.07 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.72 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.66 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.65 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.59 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 97.33 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.33 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.23 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.23 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.07 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.02 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.82 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.4 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.34 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.13 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.11 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.09 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.02 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.98 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 95.95 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.94 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.9 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.89 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.87 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.77 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.68 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 95.66 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 95.63 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.63 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.32 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.22 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.16 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.15 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.13 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.11 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.02 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.0 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.0 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.95 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.94 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.86 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.85 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.84 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.83 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.76 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.75 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.68 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.68 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.66 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.66 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.6 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.51 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.45 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.41 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 94.33 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.24 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.24 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 94.23 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.19 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.18 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.17 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.08 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 94.05 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.9 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 93.8 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 93.79 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.77 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 93.67 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 93.64 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 93.64 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 93.61 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.61 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.57 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 93.56 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.46 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 93.44 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 93.39 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.39 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.35 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.33 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.24 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.24 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.22 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 93.21 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 93.17 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.17 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.16 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.16 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 93.14 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.14 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 93.13 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.11 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.1 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 93.09 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.03 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.02 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.01 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 92.99 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.84 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.8 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 92.73 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.66 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.64 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.57 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.57 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 92.51 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 92.46 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.44 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.36 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 92.31 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 92.3 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.28 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 92.27 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 92.22 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 92.15 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.13 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.07 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.05 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 92.05 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 92.0 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 91.99 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.99 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.93 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 91.85 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 91.85 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.85 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 91.75 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 91.69 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.62 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 91.6 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 91.53 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 91.5 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 91.44 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 91.4 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 91.35 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.31 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 91.3 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 91.1 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 90.99 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 90.97 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.92 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.91 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.89 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 90.88 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.83 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.65 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 90.63 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 90.52 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 90.5 | |
| d1qo0d_ | 189 | Positive regulator of the amidase operon AmiR {Pse | 90.45 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.41 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.4 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.22 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.14 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 89.97 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.9 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.88 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 89.66 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 89.57 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 89.49 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 89.28 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 89.22 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 89.21 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 89.19 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.13 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 89.1 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 89.04 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 89.0 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 88.99 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 88.99 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 88.96 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.9 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 88.83 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 88.81 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 88.79 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 88.78 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 88.62 | |
| d2fy8a2 | 92 | Potassium channel-related protein MthK, C-terminal | 88.52 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 88.47 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.41 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 88.35 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.32 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.32 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 88.25 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 88.22 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 88.22 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 88.22 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 88.14 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 88.11 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 88.03 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 87.98 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 87.89 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 87.89 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 87.88 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 87.85 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 87.8 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 87.73 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 87.7 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.57 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 87.57 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 87.36 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 87.29 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 87.27 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 87.2 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.15 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 87.14 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 87.11 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 86.85 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 86.8 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 86.65 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.63 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 86.63 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 86.6 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 86.56 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 86.55 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.51 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 86.41 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 86.15 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 86.0 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 86.0 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.81 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 85.73 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 85.67 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 85.48 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 85.15 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 85.1 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 85.1 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 85.07 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 84.92 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 84.86 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 84.84 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.82 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.74 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 84.69 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 84.55 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 84.49 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.47 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 84.47 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 84.4 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 84.3 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 84.13 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 84.0 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 83.85 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 83.81 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 83.75 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 83.71 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 83.58 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.31 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 83.3 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 83.28 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 83.28 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 83.26 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 83.1 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 82.86 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.79 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 82.6 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 82.58 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 82.37 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 82.27 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.17 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 81.93 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 81.8 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.75 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 81.55 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 81.5 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 81.38 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 81.26 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 81.19 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 81.14 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 80.81 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 80.54 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 80.25 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 80.22 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 80.21 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 80.09 |
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=99.92 E-value=3.1e-25 Score=199.93 Aligned_cols=128 Identities=21% Similarity=0.262 Sum_probs=122.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+||||||++|+.+++.|+ +.++++||.|+++++.+++.+.++++||++|+++|+++|+++|+.+++
T Consensus 1 kHivI~G~g~~g~~l~~~L~------------~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~ 68 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV 68 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC------------GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHc------------CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEE
Confidence 59999999999999999995 357899999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHH
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKL 543 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~ 543 (663)
+++||+.|+.++.++|+++|+++++++++++++.+.++++|+|.||+|+..+|+.+++.+
T Consensus 69 ~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~~~~~~~la~~v 128 (129)
T d2fy8a1 69 NLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSI 128 (129)
T ss_dssp CCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHHHHCSEEECHHHHHHHHHHHTT
T ss_pred eccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHHCCCCEEEChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998888753
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=6.7e-25 Score=203.80 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=124.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH----HHHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~----~~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++|+||||||++|+.+++.|. +.|++|++||.|+++ .+....+++.+++||++|+++|+++|+++
T Consensus 2 ~knHiII~G~g~~g~~l~~~L~----------~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~ 71 (153)
T d1id1a_ 2 RKDHFIVCGHSILAINTILQLN----------QRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhcccc
Confidence 4789999999999999999998 789999999999875 34444578999999999999999999999
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
|+++|++++||+.|+.++..+|+++|+.+++++++++++.+.++++|+|.|++|+..+|..+++.+..
T Consensus 72 a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~l~~~l~~ 139 (153)
T d1id1a_ 72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNG 139 (153)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHTT
T ss_pred CCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999877654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=3.4e-25 Score=200.98 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=124.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++++|||+|++|+.+++.|. +.|++|++||.|+++++.+++.+..+++||++|+++|+++|+++||.+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~----------~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELH----------RMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEE
Confidence 47999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
++++|+.|..++..+++.+|..++++|++++++.+.|+++|+|+||+|++++|.++++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~a~~la~~l~~ 132 (134)
T d2hmva1 71 AIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSD 132 (134)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHHH
T ss_pred EcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChHHHHHHHHHHHHhC
Confidence 99888777777777777878879999999999999999999999999999999999998876
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=9.3e-25 Score=197.63 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=121.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|||+|++|+.+++.|. +.|++|++||.|++++++++++ +..+++||++|+++|+++|+++|+.+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~----------~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLS----------EKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcc
Confidence 6999999999999999998 7899999999999999998874 8899999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHH
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKL 543 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~ 543 (663)
+++||+.|+.+++.+|+++++ +++++++++++.+.++++|+|.+++|+.+++..+++.+
T Consensus 72 ~t~~d~~N~~~~~~~k~~~~~-~iI~~~~~~~~~~~l~~~G~d~vi~p~~~~a~~i~~~i 130 (132)
T d1lssa_ 72 VTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLGVDVVVSPELIAANYIEKLI 130 (132)
T ss_dssp CCSCHHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHTTCSEEECHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHcCCc-eEEEEecCHHHHHHHHHCCCCEEECHHHHHHHHHHHHh
Confidence 999999999999999999988 99999999999999999999999999998888887765
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.07 E-value=4.5e-06 Score=76.46 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=71.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++|+|+|.|.+|+.+|+.|. ++|++|+++|+|+++++.+.+ .+.....++..+.....++.+..++.+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~----------~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 71 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLT----------DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLV 71 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhcccee
Confidence 367999999999999999998 789999999999999999887 344556666777777777788899999
Q ss_pred EEEcCCHHHHHHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRL 500 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~ 500 (663)
+.+++.+..+.......+.
T Consensus 72 i~~~~~~~~~~~~~~~~~~ 90 (182)
T d1e5qa1 72 ISLIPYTFHATVIKSAIRQ 90 (182)
T ss_dssp EECSCGGGHHHHHHHHHHH
T ss_pred EeeccchhhhHHHHHHHhh
Confidence 8888887666555444443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=1.4e-05 Score=75.25 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=72.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++|+|+|. |.+|+.++++|. ++|++|+++.+|+++.+...+.+..++.||.+|++.++++ ++++|+|+
T Consensus 4 kkIlV~GatG~iG~~v~~~Ll----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~a-l~~~d~vi 72 (205)
T d1hdoa_ 4 KKIAIFGATGQTGLTTLAQAV----------QAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT-VAGQDAVI 72 (205)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH-HTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCcCEEEEEEcChhhcccccccccccccccccchhhHHHH-hcCCCEEE
Confidence 56999995 999999999997 7899999999999987666667899999999999999886 67889988
Q ss_pred EEcCCH----------HHHHHHHHHHHHhCCCCcEE
Q 006034 483 IMYTDK----------KRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 483 ~~~~dd----------~~n~~~~~~~r~~~~~~~ii 508 (663)
.+.+.. +.+..++..+++.+.+ +++
T Consensus 73 ~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~-r~i 107 (205)
T d1hdoa_ 73 VLLGTRNDLSPTTVMSEGARNIVAAMKAHGVD-KVV 107 (205)
T ss_dssp ECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCC-EEE
T ss_pred EEeccCCchhhhhhhHHHHHHHHHHHHhcCCC-eEE
Confidence 876421 1223345556666644 444
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.66 E-value=8.5e-05 Score=62.79 Aligned_cols=84 Identities=14% Similarity=0.034 Sum_probs=66.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|+|++|..-++.|. +.|.++++++.+... ...+.+ .+......+..+ ..+++++.
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll----------~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~------~dl~~~~l 75 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLL----------EAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE------TLLDSCWL 75 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG------GGGTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEeccCChHHHHHHhcCCceeeccCCCH------HHhCCCcE
Confidence 468999999999999999998 789999999876543 333333 445566555543 34578899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
++++++|++.|..+...+|+.+
T Consensus 76 v~~at~d~~~n~~i~~~a~~~~ 97 (113)
T d1pjqa1 76 AIAATDDDTVNQRVSDAAESRR 97 (113)
T ss_dssp EEECCSCHHHHHHHHHHHHHTT
T ss_pred EeecCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999986
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.65 E-value=2.5e-05 Score=71.76 Aligned_cols=98 Identities=15% Similarity=0.232 Sum_probs=69.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH-------HhcCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL-------LSAGIT 476 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L-------~~a~i~ 476 (663)
++|.|+|.|++|..+|..|. +.|++|.++|+++++.+.+.+.+....+++..+...- .+..++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 71 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLA----------LKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK 71 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc
Confidence 67999999999999999998 7899999999999999999876655544332111100 012346
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
++|.+++++......-.+...+..+.++. ++...+
T Consensus 72 ~aD~iii~v~~~~~~~~~~~i~~~l~~~~-~iv~~~ 106 (184)
T d1bg6a2 72 DADVILIVVPAIHHASIAANIASYISEGQ-LIILNP 106 (184)
T ss_dssp TCSEEEECSCGGGHHHHHHHHGGGCCTTC-EEEESS
T ss_pred CCCEEEEEEchhHHHHHHHHhhhccCCCC-EEEEeC
Confidence 89999999988766555555555556663 444443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.59 E-value=8.8e-05 Score=67.05 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=62.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-|+|+|++|..+|+.|. +.|++|.+.|+|++..+.+.+.+..-...| +.+ -++++|.++++
T Consensus 2 kI~iIG~G~mG~~lA~~l~----------~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~--~~~-----~~~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLR----------RRGHYLIGVSRQQSTCEKAVERQLVDEAGQ--DLS-----LLQTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTSCSEEES--CGG-----GGTTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHH----------HCCCEEEEEECCchHHHHHHHhhccceeee--ecc-----ccccccccccc
Confidence 4889999999999999998 789999999999999998888664211211 222 35799999888
Q ss_pred cCCHHHHHHHHHHHHHh-CCCCcEEEEec
Q 006034 485 YTDKKRTIEAVQRLRLA-FPAIPIYARAQ 512 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r~~-~~~~~iia~~~ 512 (663)
++.+. ...+....+.. .++ .++.-+.
T Consensus 65 vp~~~-~~~vl~~l~~~l~~~-~iv~~~~ 91 (165)
T d2f1ka2 65 TPIQL-ILPTLEKLIPHLSPT-AIVTDVA 91 (165)
T ss_dssp SCHHH-HHHHHHHHGGGSCTT-CEEEECC
T ss_pred CcHhh-hhhhhhhhhhhcccc-cceeecc
Confidence 87553 33344444443 444 5555443
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=0.00017 Score=64.16 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHhc------------------------
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKL------------------------ 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~~------------------------ 455 (663)
..++++|+|+|++|..-++.|. +.|.+|++|.. +++..+...+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll----------~~GA~VtVvap~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLM----------PTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPT 81 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHG----------GGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCHHHHHHHHhccchhhhhhhhhhhhhhcchhhhhc
Confidence 3468999999999999999997 78999999954 44433322211
Q ss_pred --CCCEEEecCCCHHHH-HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE-ecChh
Q 006034 456 --GFPILYGDASRPAVL-LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR-AQDMM 515 (663)
Q Consensus 456 --~~~vi~GD~~~~~~L-~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~-~~~~~ 515 (663)
+..-......+++.| ....++.++.|+++++|.+.|..+...+|+.+.+ +|.+. +.+++
T Consensus 82 ~~~~~~~i~~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~~~~~-~i~VNv~D~P~ 144 (150)
T d1kyqa1 82 KNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGK-QQLVNVADKPD 144 (150)
T ss_dssp SCCCSEEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCT-TSEEEETTCGG
T ss_pred cccceEEEecccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHHhccC-CCEEEeCCCcc
Confidence 011122222233333 3334567888999999999999999999997643 44443 44444
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.33 E-value=4.2e-05 Score=68.25 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=74.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-++++|||||..|+.+|+.++ ..|.+|+|.|.||-++-++.-+|+++..- ++ -++++|.+|
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~r----------g~Ga~V~V~E~DPi~alqA~mdGf~v~~~--------~~-a~~~aDi~v 83 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMK----------GLGARVYITEIDPICAIQAVMEGFNVVTL--------DE-IVDKGDFFI 83 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSCHHHHHHHHTTTCEECCH--------HH-HTTTCSEEE
T ss_pred CCEEEEecccccchhHHHHHH----------hCCCEEEEEecCchhhHHHHhcCCccCch--------hH-ccccCcEEE
Confidence 468999999999999999998 89999999999998887777788888532 22 357889999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC---hhhHHHHHHc
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD---MMHLLDLKKA 523 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~---~~~~~~l~~~ 523 (663)
.+|++. |+.-....+++..+ -|++.+-. +-+.+.+++.
T Consensus 84 TaTGn~--~vI~~~h~~~MKdg-aIl~N~GHfd~EIdv~~L~~~ 124 (163)
T d1v8ba1 84 TCTGNV--DVIKLEHLLKMKNN-AVVGNIGHFDDEIQVNELFNY 124 (163)
T ss_dssp ECCSSS--SSBCHHHHTTCCTT-CEEEECSSTTTSBCHHHHHTS
T ss_pred EcCCCC--ccccHHHHHHhhCC-eEEEeccccchhhhhHHHHhC
Confidence 999984 34444566666544 57777664 3344444443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.23 E-value=0.0012 Score=59.18 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=79.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+|+.|. +.|++|.+.|+|+++.+.+.+.+.... .+-.+. +.++|.++.+
T Consensus 3 kIg~IGlG~MG~~iA~~L~----------~~g~~v~~~d~~~~~~~~~~~~~~~~~---~~~~e~-----~~~~diii~~ 64 (162)
T d3cuma2 3 QIAFIGLGHMGAPMATNLL----------KAGYLLNVFDLVQSAVDGLVAAGASAA---RSARDA-----VQGADVVISM 64 (162)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHTTCEEC---SSHHHH-----HTSCSEEEEC
T ss_pred EEEEEEEHHHHHHHHHHHH----------HCCCeEEEEECchhhhhhhhhhhcccc---chhhhh-----ccccCeeeec
Confidence 5899999999999999998 789999999999999998887654322 111122 3578999999
Q ss_pred cCCHHHHHHHHH----HHHHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcCc
Q 006034 485 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 485 ~~dd~~n~~~~~----~~r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p~ 532 (663)
..+++....+.. ....+.++ .++.-..+- +..+.+++.|++.+=.|-
T Consensus 65 v~~~~~~~~v~~~~~~~~~~l~~g-~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv 121 (162)
T d3cuma2 65 LPASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAPV 121 (162)
T ss_dssp CSCHHHHHHHHHSTTCHHHHSCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred ccchhhHHHHHhccccccccCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCcEEeccc
Confidence 998865544433 34445555 666655543 566778888998886664
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.23 E-value=0.0011 Score=59.26 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=77.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|+.+|+.|. +.|++|.+.|+++++.+.+.+.+..+. .+++-. ++++|.++.+
T Consensus 2 kIgiIGlG~MG~~~A~~L~----------~~G~~V~~~d~~~~~~~~~~~~~~~~~----~~~~e~----~~~~d~ii~~ 63 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLL----------KAGYSLVVSDRNPEAIADVIAAGAETA----STAKAI----AEQCDVIITM 63 (161)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----SSHHHH----HHHCSEEEEC
T ss_pred EEEEEehhHHHHHHHHHHH----------HCCCeEEEEeCCcchhHHHHHhhhhhc----ccHHHH----HhCCCeEEEE
Confidence 3789999999999999998 799999999999999999998776542 233322 2467889999
Q ss_pred cCCHHHHHHHHH----HHHHhCCCCcEEEEecC--h----hhHHHHHHcCCCeEEcCc
Q 006034 485 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 485 ~~dd~~n~~~~~----~~r~~~~~~~iia~~~~--~----~~~~~l~~~Gad~vi~p~ 532 (663)
..+++.-..+.. ....+.++ .++.-..+ + +..+.+++.|++.+=.|-
T Consensus 64 v~~~~~v~~v~~~~~~~~~~~~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv 120 (161)
T d1vpda2 64 LPNSPHVKEVALGENGIIEGAKPG-TVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120 (161)
T ss_dssp CSSHHHHHHHHHSTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCE
T ss_pred cCCHHHHHHHHhCCcchhhccCCC-CEEEECCCCCHHHHHHHHHHHHHcCCceecccc
Confidence 888754443331 34445555 56654443 2 345667788998876664
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.07 E-value=0.00091 Score=60.84 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=79.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCC--EEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~--vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..|-++|.|++|..+|+.|. +.|++|.+.|+++++++.+.+.+.. ...| +...+.+.++ +.++|.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-~~~~~~i 70 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMN----------DHGFVVCAFNRTVSKVDDFLANEAKGTKVLG-AHSLEEMVSK-LKKPRRI 70 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHHTTTTTSSCEE-CSSHHHHHHH-BCSSCEE
T ss_pred CcEEEEeEhHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHhccccccccc-hhhhhhhhhh-hcccceE
Confidence 46899999999999999998 7899999999999999999875432 2233 3444555443 5677877
Q ss_pred EEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHcCCCeEEcCc
Q 006034 482 MIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~------~~~~~~l~~~Gad~vi~p~ 532 (663)
+.+..+++.-..+...+.. +.++ .++.-..+ .+..+.+++.|+..+=.|-
T Consensus 71 i~~~~~~~~v~~v~~~l~~~~~~g-~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapv 127 (176)
T d2pgda2 71 ILLVKAGQAVDNFIEKLVPLLDIG-DIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV 127 (176)
T ss_dssp EECSCTTHHHHHHHHHHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEecCchHHHHHHHHHHHhccccC-cEEEecCcchhHHHHHHHHHHHhcCCceecccc
Confidence 7777776544444444333 4454 55554432 3445667788998776664
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00027 Score=63.14 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-++++|||||.+|+.+|+.++ ..|.+|++.|.||-+.-++.-+|+.+.. +++ -+..+|.++
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~r----------g~G~~V~v~e~dp~~al~A~~dG~~v~~--------~~~-a~~~adivv 84 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALR----------GFGARVIITEIDPINALQAAMEGYEVTT--------MDE-ACQEGNIFV 84 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEECC--------HHH-HTTTCSEEE
T ss_pred CCEEEEeccccccHHHHHHHH----------hCCCeeEeeecccchhHHhhcCceEeee--------hhh-hhhhccEEE
Confidence 457999999999999999998 8999999999999887777777888762 222 256789898
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEec---ChhhHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ---DMMHLLDLKK 522 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~---~~~~~~~l~~ 522 (663)
.+|++. ++.-....+++.+. -|++.+- ++-+.+.|++
T Consensus 85 taTGn~--~vI~~eh~~~MKdg-aIL~N~Ghfd~EId~~~L~~ 124 (163)
T d1li4a1 85 TTTGCI--DIILGRHFEQMKDD-AIVCNIGHFDVEIDVKWLNE 124 (163)
T ss_dssp ECSSCS--CSBCHHHHTTCCTT-EEEEECSSSTTSBCHHHHHH
T ss_pred ecCCCc--cchhHHHHHhccCC-eEEEEeccccceecHHHHhh
Confidence 888873 33444566666555 5666653 3334444444
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.82 E-value=0.003 Score=58.56 Aligned_cols=107 Identities=20% Similarity=0.154 Sum_probs=76.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++|+|-|+|++|+.+++.|. +.|.+|++.|.|+++.+...+.+...+ ..+++|. .++|.++
T Consensus 27 gk~v~IqG~G~VG~~~A~~L~----------~~Gakvvv~d~d~~~~~~~~~~g~~~~----~~~~~~~----~~~DI~i 88 (201)
T d1c1da1 27 GLTVLVQGLGAVGGSLASLAA----------EAGAQLLVADTDTERVAHAVALGHTAV----ALEDVLS----TPCDVFA 88 (201)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----CGGGGGG----CCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEecchHHHHHHHHhhccccc----Ccccccc----ccceeee
Confidence 368999999999999999998 799999999999999998887776554 3344553 4789776
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE-ecCh----hhHHHHHHcCCCeEEcCchH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR-AQDM----MHLLDLKKAGATDAILENAE 534 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~-~~~~----~~~~~l~~~Gad~vi~p~~~ 534 (663)
-+...+..|- ..++++++ ++|+. +|++ +..+.|++-|+ .+.|...
T Consensus 89 PcA~~~~I~~---~~a~~i~a--k~i~e~AN~p~~~~~~~~~L~~rgI--~~iPD~l 138 (201)
T d1c1da1 89 PCAMGGVITT---EVARTLDC--SVVAGAANNVIADEAASDILHARGI--LYAPDFV 138 (201)
T ss_dssp ECSCSCCBCH---HHHHHCCC--SEECCSCTTCBCSHHHHHHHHHTTC--EECCHHH
T ss_pred cccccccccH---HHHhhhhh--heeeccCCCCcchhhHHHHhcccce--EEEehhh
Confidence 4444433333 35666754 55654 4433 34568888888 6789865
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.82 E-value=0.0025 Score=57.21 Aligned_cols=93 Identities=23% Similarity=0.240 Sum_probs=61.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|+|.+|..+|+.|. +.|+ +|..+|+|++..+.+.+.+..-.. .++.+ +....++|.++
T Consensus 3 ~I~IIG~G~mG~sla~~L~----------~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~--~~~~~---~~~~~~~dlIi 67 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLR----------RSGFKGKIYGYDINPESISKAVDLGIIDEG--TTSIA---KVEDFSPDFVM 67 (171)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHTTSCSEE--ESCGG---GGGGTCCSEEE
T ss_pred EEEEEccCHHHHHHHHHHH----------hcCCCeEEEEEECChHHHHHHHHhhcchhh--hhhhh---hhhcccccccc
Confidence 6999999999999999997 5554 688899999999998887642111 12222 12234789998
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
.+++.+...-.+-...+.++++ .++.-+.+
T Consensus 68 la~p~~~~~~vl~~l~~~~~~~-~ii~d~~s 97 (171)
T d2g5ca2 68 LSSPVRTFREIAKKLSYILSED-ATVTDQGS 97 (171)
T ss_dssp ECSCHHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred ccCCchhhhhhhhhhhcccccc-cccccccc
Confidence 8888654433333334445655 56654443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.40 E-value=0.011 Score=53.22 Aligned_cols=115 Identities=20% Similarity=0.184 Sum_probs=72.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCC-----EEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-----ILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~-----vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+|-|+|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+.. -.....+..++... +.+++
T Consensus 3 kIGvIGlG~MG~~ma~~L~----------~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 70 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIA----------EKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAAS--LKKPR 70 (178)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHH--BCSSC
T ss_pred EEEEEeehHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHh--cccce
Confidence 4789999999999999998 7899999999999999998775432 23333333444433 34445
Q ss_pred EEEEEcCCHHHHHHHHHH-HHHhCCCCcEEEEecC------hhhHHHHHHcCCCeEEcCc
Q 006034 480 AVMIMYTDKKRTIEAVQR-LRLAFPAIPIYARAQD------MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~-~r~~~~~~~iia~~~~------~~~~~~l~~~Gad~vi~p~ 532 (663)
.+.....+.......... ...+.++ .++.-..+ .+..+.+++.|+..+-.|-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv 129 (178)
T d1pgja2 71 KALILVQAGAATDSTIEQLKKVFEKG-DILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGI 129 (178)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHCCTT-CEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred EEEEeecCcchhhhhhhhhhhhcccc-ceecccCccchhHHHHHHHHHhhcceeEecccc
Confidence 455555544332222233 3334454 56655543 3445666778887766554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.34 E-value=0.0062 Score=53.58 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=49.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++.++|+|++|+.+++.|.+ ..++++.+.|+|+++.+.+.++ +..+. -|. + .+.++|.++.
T Consensus 2 kI~fIG~G~MG~ai~~~l~~---------~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~~---~-----~v~~~Div~l 63 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVK---------QGGYRIYIANRGAEKRERLEKELGVETS-ATL---P-----ELHSDDVLIL 63 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------HCSCEEEEECSSHHHHHHHHHHTCCEEE-SSC---C-----CCCTTSEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHH---------CCCCcEEEEeCChhHHHHhhhhcccccc-ccc---c-----cccccceEEE
Confidence 47899999999999998862 4458999999999999998774 54433 111 1 2577898888
Q ss_pred EcCC
Q 006034 484 MYTD 487 (663)
Q Consensus 484 ~~~d 487 (663)
++..
T Consensus 64 avkP 67 (152)
T d1yqga2 64 AVKP 67 (152)
T ss_dssp CSCH
T ss_pred ecCH
Confidence 8863
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.13 E-value=0.0093 Score=53.23 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE-EEecCCCH------HHHHhcC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-LYGDASRP------AVLLSAG 474 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v-i~GD~~~~------~~L~~a~ 474 (663)
..+.++|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.+... +.-|..+. +.+++..
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak----------~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAK----------AYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCEEEEEcccccchhhHhhHh----------hhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence 4567999999999999999887 78899999999999999999987654 33444322 1233333
Q ss_pred CCCCcEEEEEcCCHHH
Q 006034 475 ITSPKAVMIMYTDKKR 490 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~ 490 (663)
=+.+|.++-+++....
T Consensus 96 g~g~D~vid~~g~~~~ 111 (170)
T d1e3ja2 96 GDLPNVTIDCSGNEKC 111 (170)
T ss_dssp SSCCSEEEECSCCHHH
T ss_pred ccCCceeeecCCChHH
Confidence 4678988888887643
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0019 Score=53.91 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC-CCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI-TSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i-~~a~~v 481 (663)
..++-|+|.|+.|+.++..-. +.|+++.+.|.|++. -+.......+.||..|.+.+.+..- .++|.+
T Consensus 11 ~~kigIlGgGQL~rMla~aA~----------~lG~~v~v~d~~~~~--PA~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi 78 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQ----------RLGVEVIAVDRYADA--PAMHVAHRSHVINMLDGDALRRVVELEKPHYI 78 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHH----------TTTCEEEEEESSTTC--GGGGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHH----------HCCCEEEEEcCCCCC--chhhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence 347999999999999999997 899999999998874 2233346788999999999977543 467855
Q ss_pred EEEcCCHHHHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRL 498 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~ 498 (663)
+.+.+..+..+...+
T Consensus 79 --T~E~EnI~~~~L~~l 93 (111)
T d1kjqa2 79 --VPEIEAIATDMLIQL 93 (111)
T ss_dssp --EECSSCSCHHHHHHH
T ss_pred --EEEecCcCHHHHHHH
Confidence 555544555544444
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.09 E-value=0.0082 Score=58.39 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=56.8
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--------HHHHHHhcCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--------VVKESRKLGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--------~~~~~~~~~~~vi~GD~~~~~~L~~ 472 (663)
.+++|+|.|. |.+|+.+++.|. +.|++|+++.+++. ......+.+..++.||.+|++.+.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~----------~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~ 71 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASI----------SLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVD 71 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhh
Confidence 4567999996 999999999998 78999999988643 2333445789999999999999977
Q ss_pred cCCCCCcEEEEEc
Q 006034 473 AGITSPKAVMIMY 485 (663)
Q Consensus 473 a~i~~a~~vv~~~ 485 (663)
+ ...++.++.+.
T Consensus 72 ~-~~~~~~~~~~~ 83 (312)
T d1qyda_ 72 A-LKQVDVVISAL 83 (312)
T ss_dssp H-HTTCSEEEECC
T ss_pred h-ccCcchhhhhh
Confidence 5 45556565543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0027 Score=57.04 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |..+++.+.+...+..|.+
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak----------~~G~~vi~~~~~~~k~~~a~~lGa~~~i-~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISK----------AMGAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HHTCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHHSCSCEEEE
T ss_pred CCCEEEEECCCCcchhHHHHhh----------hccccccccccchhHHHHhhccCCcEEe-eccchHHHHHhhhcccceE
Confidence 4567999999999999999886 7899999999999999999998876544 3333333344455778988
Q ss_pred EEEcCC
Q 006034 482 MIMYTD 487 (663)
Q Consensus 482 v~~~~d 487 (663)
+.+.+.
T Consensus 96 i~~~~~ 101 (168)
T d1piwa2 96 VVCASS 101 (168)
T ss_dssp EECCSC
T ss_pred EEEecC
Confidence 776554
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.98 E-value=0.0028 Score=55.90 Aligned_cols=67 Identities=22% Similarity=0.163 Sum_probs=50.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-|+|+|++|+.+++.|. +.|+++++.|+++++.......+..+. . +-.|+ ++++|.++++
T Consensus 2 kIgiIG~G~mG~~ia~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~-~--~~~e~-----~~~~diIi~~ 63 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLR----------SRGVEVVTSLEGRSPSTIERARTVGVT-E--TSEED-----VYSCPVVISA 63 (152)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCEEEECCTTCCHHHHHHHHHHTCE-E--CCHHH-----HHTSSEEEEC
T ss_pred EEEEEcHHHHHHHHHHHHH----------HCCCeEEEEcCchhHHHHHhhhccccc-c--cHHHH-----HhhcCeEEEE
Confidence 4789999999999999998 789999999988877666665444442 2 22333 4678999999
Q ss_pred cCCHH
Q 006034 485 YTDKK 489 (663)
Q Consensus 485 ~~dd~ 489 (663)
..+++
T Consensus 64 v~~~~ 68 (152)
T d1i36a2 64 VTPGV 68 (152)
T ss_dssp SCGGG
T ss_pred ecCch
Confidence 88764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.95 E-value=0.0074 Score=53.16 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=66.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++-++|+|++|+.+++.|. +.++++.+.++++++.+.+.+ .+..+.. +..++ ++++|.++.
T Consensus 2 kIg~IG~G~mG~al~~~l~----------~~~~~i~v~~r~~~~~~~l~~~~g~~~~~---~~~~~-----~~~~dvIil 63 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLK----------QTPHELIISGSSLERSKEIAEQLALPYAM---SHQDL-----IDQVDLVIL 63 (152)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TSSCEEEEECSSHHHHHHHHHHHTCCBCS---SHHHH-----HHTCSEEEE
T ss_pred EEEEEeccHHHHHHHHHHH----------hCCCeEEEEcChHHhHHhhccccceeeec---hhhhh-----hhccceeee
Confidence 4789999999999999997 679999999999999988765 4654431 22333 347898888
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCC
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGAT 526 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad 526 (663)
+...+.. -..+++++++..++.-+..-+....-+.++-+
T Consensus 64 avkp~~~----~~vl~~l~~~~~iis~~agi~~~~l~~~l~~~ 102 (152)
T d2ahra2 64 GIKPQLF----ETVLKPLHFKQPIISMAAGISLQRLATFVGQD 102 (152)
T ss_dssp CSCGGGH----HHHHTTSCCCSCEEECCTTCCHHHHHHHHCTT
T ss_pred ecchHhH----HHHhhhcccceeEecccccccHHHHHhhhccc
Confidence 8754321 12346677775566555544433333444443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.94 E-value=0.0067 Score=55.57 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcCCC
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
.++++|.| .|-+|+.+++.|. ++|.+|+++++|+++.+.+.+ ....+...|.+|++-++++ ++
T Consensus 23 gK~vlItGasgGIG~~ia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~ 91 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLA----------GEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEA-VK 91 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHH-TT
T ss_pred CCEEEEECCCHHHHHHHHHHHH----------hhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHH-hc
Confidence 35677777 5999999999998 789999999999998766654 4567889999999998876 67
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
++|.+|-..+
T Consensus 92 ~iDilin~Ag 101 (191)
T d1luaa1 92 GAHFVFTAGA 101 (191)
T ss_dssp TCSEEEECCC
T ss_pred CcCeeeecCc
Confidence 8997776543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.90 E-value=0.014 Score=51.02 Aligned_cols=39 Identities=31% Similarity=0.617 Sum_probs=34.4
Q ss_pred CCCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH
Q 006034 402 GSEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK 450 (663)
Q Consensus 402 ~~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~ 450 (663)
.-++|.|+| .|.+|+.+++.|. +.|++|.+.|++++...
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~----------~~G~~V~~~d~~~~~~~ 47 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLR----------ASGYPISILDREDWAVA 47 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHH----------TTTCCEEEECTTCGGGH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHH----------HcCCCcEeccccccccc
Confidence 346899999 8999999999998 89999999999887644
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.89 E-value=0.014 Score=50.97 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=60.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----cC-CCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LG-FPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~~-~~vi~GD~~~~~~L~~ 472 (663)
.+.+|.|+|.|++|..++..|.. .....+++++|.|+++.+- +.+ .+ ..+..| |.+
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~--------~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~---d~~---- 68 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQ--------QGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG---EYS---- 68 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEEC---CGG----
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------cCCCcEEEEeecccchhHHHHHHHhccccccCCceEeec---cHH----
Confidence 35579999999999999998862 1223589999999987542 211 22 223333 332
Q ss_pred cCCCCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 473 AGITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.+.+||.++++.+.. ..|.. ++..+++.+|+ .++..+.||.+
T Consensus 69 -~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~-aivivvtNPvd 125 (146)
T d1ez4a1 69 -DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFD-GIFLVAANPVD 125 (146)
T ss_dssp -GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCC-SEEEECSSSHH
T ss_pred -HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-cEEEEeCCccH
Confidence 357899888876431 22333 33445666777 45666666654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0044 Score=49.75 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++|.|+|+|..|+.+|+.|. +.|.+|.+.|.+++. .+.+ +.+..+..|+. +++.+ .++|.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~----------~~g~~v~~~D~~~~~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~d~ 67 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFL----------ARGVTPRVMDTRMTPPGLDKL-PEAVERHTGSL-NDEWL-----MAADL 67 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHH----------HTTCCCEEEESSSSCTTGGGS-CTTSCEEESBC-CHHHH-----HHCSE
T ss_pred CCEEEEEeECHHHHHHHHHHH----------HCCCEEEEeeCCcCchhHHHH-hhccceeeccc-chhhh-----ccCCE
Confidence 457999999999999999998 789999999986542 2222 24566666653 34444 46687
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEE
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~ii 508 (663)
+|+..+=+. |-.....|++.+ ++||
T Consensus 68 vi~SPGi~~-~~~~~~~a~~~g--i~ii 92 (93)
T d2jfga1 68 IVASPGIAL-AHPSLSAAADAG--IEIV 92 (93)
T ss_dssp EEECTTSCT-TSHHHHHHHHTT--CEEE
T ss_pred EEECCCCCC-CCHHHHHHHHcC--CCeE
Confidence 777665443 334566677775 4454
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0013 Score=58.72 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=66.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC--CC--EEEecCCCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG--FP--ILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~--~~--vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
+|.|+|.|.+|..++..|. +.|++|.++++++++.+.....+ .. ...-...+++.+ +.+|.
T Consensus 2 kI~IiGaG~iG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~D~ 66 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALC----------KQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL-----ATSDL 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH-----HTCSE
T ss_pred EEEEECcCHHHHHHHHHHH----------HCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhh-----cccce
Confidence 5899999999999999998 78999999999998655433211 11 111112344444 46899
Q ss_pred EEEEcCCHHHHHHHHHHHH-HhCCCCcEEEEecChhhHHHHHH
Q 006034 481 VMIMYTDKKRTIEAVQRLR-LAFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r-~~~~~~~iia~~~~~~~~~~l~~ 522 (663)
+++++...... .....++ ..+++..|+...|--.+.+.+.+
T Consensus 67 iii~vka~~~~-~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l~~ 108 (167)
T d1ks9a2 67 LLVTLKAWQVS-DAVKSLASTLPVTTPILLIHNGMGTIEELQN 108 (167)
T ss_dssp EEECSCGGGHH-HHHHHHHTTSCTTSCEEEECSSSCTTGGGTT
T ss_pred EEEeecccchH-HHHHhhccccCcccEEeeccCcccHHHHHhh
Confidence 99998875433 3333443 45667678877775555444444
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.016 Score=51.67 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=58.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEe-cCCCHHHH-H---hcCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYG-DASRPAVL-L---SAGI 475 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~G-D~~~~~~L-~---~a~i 475 (663)
..+.++|+|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+.- +..+++.. + .-.=
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~----------~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAK----------AMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHHHH----------HcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCC
Confidence 4467999999999999999997 6777 7999999999999999988765543 33343322 2 1122
Q ss_pred CCCcEEEEEcCCHH
Q 006034 476 TSPKAVMIMYTDKK 489 (663)
Q Consensus 476 ~~a~~vv~~~~dd~ 489 (663)
..+|.++-+++++.
T Consensus 96 ~g~Dvvid~~G~~~ 109 (171)
T d1pl8a2 96 CKPEVTIECTGAEA 109 (171)
T ss_dssp SCCSEEEECSCCHH
T ss_pred CCceEEEeccCCch
Confidence 47898888888754
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=95.66 E-value=0.01 Score=59.40 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH--HHHHh-cCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRK-LGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~--~~~~~-~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++.|+|.|. |.+|..+++.|. +.|++|+++-+|++.. +.+.. .+..+++||.+|++.+.++-.+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll----------~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~ 71 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAA----------AVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEG 71 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTT
T ss_pred CCCEEEEECCChHHHHHHHHHHH----------hCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcC
Confidence 4678999996 999999999998 7899999998877653 33333 57889999999865544444566
Q ss_pred CcEEEEEcCCH-----HHHHHHHHHHHHhCCC
Q 006034 478 PKAVMIMYTDK-----KRTIEAVQRLRLAFPA 504 (663)
Q Consensus 478 a~~vv~~~~dd-----~~n~~~~~~~r~~~~~ 504 (663)
++.+.+..+.. .....++..+++.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~agv~ 103 (350)
T d1xgka_ 72 AHLAFINTTSQAGDEIAIGKDLADAAKRAGTI 103 (350)
T ss_dssp CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCC
T ss_pred CceEEeecccccchhhhhhhHHHHHHHHhCCC
Confidence 77666655431 2223355667777644
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=95.63 E-value=0.054 Score=47.78 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----cCCCEEEecCCCHHHHHh
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~~~~vi~GD~~~~~~L~~ 472 (663)
..+++|.|+|.|++|..++-.|.. +..-.+++++|.|+++++- +.+ .+.+.+.+... .+
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~--------~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~---- 84 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILG--------KSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YS---- 84 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHH--------TTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GG----
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh--------cCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hh----
Confidence 356789999999999999999862 1223379999999987532 222 23455544332 32
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
...++|.+|++.+. | +.|..+ +...++.+|+ -++..+.||-+.
T Consensus 85 -~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~-aiiivvtNPvDv 142 (160)
T d1i0za1 85 -VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD-CIIIVVSNPVDI 142 (160)
T ss_dssp -GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSHHH
T ss_pred -hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEeCCchHH
Confidence 25788988776643 1 345554 5556677887 567777776553
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.63 E-value=0.0067 Score=56.13 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=54.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc-----------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA----------- 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a----------- 473 (663)
+|.|+|.|.+|..+|-.|. +.|++|+++|.|+++++.+.+...+.. +....+.|.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la----------~~g~~V~g~D~n~~~i~~ln~g~~p~~--e~~~~~~l~~~~~~~~~~~~~~ 69 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLS----------ARGHEVIGVDVSSTKIDLINQGKSPIV--EPGLEALLQQGRQTGRLSGTTD 69 (202)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTCCSSC--CTTHHHHHHHHHHTTCEEEESC
T ss_pred EEEEECCCHhHHHHHHHHH----------hCCCcEEEEeCCHHHHHHhcccCCccc--chhhhhhhhhhhcccccccCCC
Confidence 4789999999999999998 789999999999999999987655543 33333434221
Q ss_pred ---CCCCCcEEEEEcCC
Q 006034 474 ---GITSPKAVMIMYTD 487 (663)
Q Consensus 474 ---~i~~a~~vv~~~~d 487 (663)
.++++|.++++.+.
T Consensus 70 ~~~~i~~~d~i~i~VpT 86 (202)
T d1mv8a2 70 FKKAVLDSDVSFICVGT 86 (202)
T ss_dssp HHHHHHTCSEEEECCCC
T ss_pred HHHHHhhCCEEEEecCc
Confidence 14578988888753
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.013 Score=53.11 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=54.5
Q ss_pred cCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-----------------------HHHHHhcC
Q 006034 400 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----------------------VKESRKLG 456 (663)
Q Consensus 400 ~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-----------------------~~~~~~~~ 456 (663)
...++||+|+|.|+-|.+.|..|. ++|++|+++|++++. .+.+.+.+
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la----------~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g 109 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAA----------ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG 109 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHH----------TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEECccHHHHHHHHHHH----------hhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC
Confidence 346789999999999999999998 899999999998632 12233466
Q ss_pred CCEEEecCCCHHHHHhcCCCCCcEEEEEcCC
Q 006034 457 FPILYGDASRPAVLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 457 ~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d 487 (663)
.++..|.--+. ....++|.+|++++-
T Consensus 110 V~i~l~~~Vt~-----~~~~~~d~vilAtG~ 135 (179)
T d1ps9a3 110 VTLKLNHTVTA-----DQLQAFDETILASGI 135 (179)
T ss_dssp CEEEESCCCCS-----SSSCCSSEEEECCCE
T ss_pred eEEEeCCEEcc-----cccccceeEEEeecC
Confidence 77766543332 245688999998875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.26 E-value=0.015 Score=52.47 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHH-------HHHhcC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPA-------VLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~-------~L~~a~ 474 (663)
-++|+|.|.|.+|...++.++ ..|. +|+++|.|+++.+.+++.|...+. |..+.+ +.+.-+
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak----------~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIAR----------SLGAENVIVIAGSPNRLKLAEEIGADLTL-NRRETSVEERRKAIMDITH 97 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTBSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTT
T ss_pred CCEEEEECCCccchhheeccc----------ccccccccccccccccccccccccceEEE-eccccchHHHHHHHHHhhC
Confidence 468999999999999999887 6786 799999999999999998764432 333322 333344
Q ss_pred CCCCcEEEEEcCCHH
Q 006034 475 ITSPKAVMIMYTDKK 489 (663)
Q Consensus 475 i~~a~~vv~~~~dd~ 489 (663)
-..+|.++-+++...
T Consensus 98 ~~g~Dvvid~vG~~~ 112 (182)
T d1vj0a2 98 GRGADFILEATGDSR 112 (182)
T ss_dssp TSCEEEEEECSSCTT
T ss_pred CCCceEEeecCCchh
Confidence 456898888887643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.22 E-value=0.023 Score=51.09 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEEEe--cCC--CHHHHHhcCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYG--DAS--RPAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi~G--D~~--~~~~L~~a~i~ 476 (663)
..+.|+|.|.|.+|...++.++ ..| .+|+++|.|+++.+.+++.|...+.- |.. ..+..+.-+=.
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak----------~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCK----------SAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECCCchhHHHHHHHH----------HcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccc
Confidence 4567999999999999999997 666 68999999999999999988765542 222 22244444556
Q ss_pred CCcEEEEEcCCHHHHHHHH
Q 006034 477 SPKAVMIMYTDKKRTIEAV 495 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~ 495 (663)
.+|.++-+++.........
T Consensus 99 G~d~vi~~~g~~~~~~~a~ 117 (176)
T d1d1ta2 99 NVGYTFEVIGHLETMIDAL 117 (176)
T ss_dssp CCCEEEECSCCHHHHHHHH
T ss_pred cceEEEEeCCchHHHHHHH
Confidence 7999999998876544433
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.021 Score=54.27 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=57.6
Q ss_pred CcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
+.++|.|.+ -+|+.+++.|. ++|++|++.|+++++.+++.+ .+...+..|.+|++..+++ .+.+-
T Consensus 6 K~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALH----------ASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 456777764 59999999998 899999999999999887765 4677899999999887764 55678
Q ss_pred cEEEEE
Q 006034 479 KAVMIM 484 (663)
Q Consensus 479 ~~vv~~ 484 (663)
|.+|-.
T Consensus 76 DilVnn 81 (242)
T d1cyda_ 76 DLLVNN 81 (242)
T ss_dssp SEEEEC
T ss_pred eEEEEC
Confidence 877654
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.15 E-value=0.0092 Score=56.19 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|=|+|++|+.+++.|. +.|.++++.|.|++.++.+.+ .+...+ .+.+.|. .++|.+
T Consensus 39 g~~v~IqG~GnVG~~~a~~L~----------~~Gakvv~~d~~~~~~~~~~~~~g~~~~----~~~~~~~----~~cDIl 100 (230)
T d1leha1 39 GLAVSVQGLGNVAKALCKKLN----------TEGAKLVVTDVNKAAVSAAVAEEGADAV----APNAIYG----VTCDIF 100 (230)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCCEEC----CGGGTTT----CCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEeecccHHHHHHHHHhcCCccc----CCccccc----ccccEe
Confidence 468999999999999999998 899999999999999887765 444332 2233332 478977
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEE-EecC----hhhHHHHHHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQD----MMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia-~~~~----~~~~~~l~~~Gad~vi~p~~ 533 (663)
+=+.-.+..|-. +++++.+ ++|+ -+|+ ++..+.|++-|+ ++.|..
T Consensus 101 ~PcA~~~~I~~~---~~~~l~a--k~Ive~ANn~~t~~ea~~~L~~rGI--~~iPD~ 150 (230)
T d1leha1 101 APCALGAVLNDF---TIPQLKA--KVIAGSADNQLKDPRHGKYLHELGI--VYAPDY 150 (230)
T ss_dssp EECSCSCCBSTT---HHHHCCC--SEECCSCSCCBSSHHHHHHHHHHTC--EECCHH
T ss_pred cccccccccChH---HhhccCc--cEEEecccCCCCCchHHHHHHhhCc--EEEeeh
Confidence 666555433333 4566754 5666 4433 677788999988 677875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.021 Score=54.22 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=57.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
+.++|.|. +-+|+.+++.|. ++|++|++.|+|+++.+.+.+ .+...+..|.+|++..+++ .+.+-
T Consensus 8 K~~lITGas~GIG~aia~~la----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALH----------ATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 45666676 569999999998 899999999999999888765 4577889999999877654 56678
Q ss_pred cEEEEE
Q 006034 479 KAVMIM 484 (663)
Q Consensus 479 ~~vv~~ 484 (663)
|.+|-.
T Consensus 78 DilVnn 83 (244)
T d1pr9a_ 78 DLLVNN 83 (244)
T ss_dssp CEEEEC
T ss_pred eEEEec
Confidence 877643
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=95.11 E-value=0.036 Score=49.14 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=71.1
Q ss_pred cEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|+|+|++|+. ..+.+. ...+.+++++|.|+++.+.+.+ .+....+.|. ++.++ ++.|+|+
T Consensus 3 rvgiiG~G~~~~~~~~~~l~---------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~ll~----~~iD~V~ 67 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLA---------QWPDIELVLCTRNPKVLGTLATRYRVSATCTDY--RDVLQ----YGVDAVM 67 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHT---------TSTTEEEEEECSCHHHHHHHHHHTTCCCCCSST--TGGGG----GCCSEEE
T ss_pred EEEEEcCCHHHHHHHHHHHH---------hCCCcEEEEEECCHHHHHHHHHhcccccccccH--HHhcc----cccceec
Confidence 5889999999976 567776 2567788999999999988876 4444444433 34453 3579999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCeEEc
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 530 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~vi~ 530 (663)
++++++. -...+..+-+.+ .++++. +.+.++.+.+ ++.|....+.
T Consensus 68 I~tp~~~-H~~~~~~al~~g--k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg 119 (167)
T d1xeaa1 68 IHAATDV-HSTLAAFFLHLG--IPTFVDKPLAASAQECENLYELAEKHHQPLYVG 119 (167)
T ss_dssp ECSCGGG-HHHHHHHHHHTT--CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccc-cccccccccccc--cccccCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 9988754 344555555555 357763 4455444444 5566655443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.02 E-value=0.017 Score=54.97 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=55.8
Q ss_pred CcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc------CC
Q 006034 404 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 404 ~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a------~i 475 (663)
+.++|.|.+ -+|+.+++.|. ++|++|++.|+|+++.++..+ .+...+.+|.+|++-.+++ ..
T Consensus 6 K~~lITGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFA----------KEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 356667764 59999999998 899999999999999888765 5678899999999887642 23
Q ss_pred CCCcEEEEE
Q 006034 476 TSPKAVMIM 484 (663)
Q Consensus 476 ~~a~~vv~~ 484 (663)
.+-|.+|-.
T Consensus 76 g~iDilVnn 84 (242)
T d1ulsa_ 76 GRLDGVVHY 84 (242)
T ss_dssp SSCCEEEEC
T ss_pred CCceEEEEC
Confidence 467766643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.00 E-value=0.019 Score=51.51 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEE----ecCCCHHHHHhcCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILY----GDASRPAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~----GD~~~~~~L~~a~i~ 476 (663)
..+.|+|.|.|.+|...++.++ ..|. +|+++|.|+++.+.+++.|...+. .|..-+++.++.+=.
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak----------~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCK----------AAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCchhHHHHHHHH----------HcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 4568999999999999999997 5664 799999999999999998866543 122234566666667
Q ss_pred CCcEEEEEcCCHHHHHHHHHHH
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRL 498 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~ 498 (663)
.+|.++-+++..+........+
T Consensus 97 G~d~vid~~g~~~~~~~~~~~~ 118 (174)
T d1p0fa2 97 GVDYAVECAGRIETMMNALQST 118 (174)
T ss_dssp CBSEEEECSCCHHHHHHHHHTB
T ss_pred CCcEEEEcCCCchHHHHHHHHH
Confidence 8999999998865544433333
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.00 E-value=0.0031 Score=53.50 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
.++++|+|.|..|..+|..|. +.|.+|+++|+++.
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~----------~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLA----------EAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHH----------HTTCEEEEECSSSC
T ss_pred CCcEEEECCcHHHHHHHHHhh----------cccceEEEEecccc
Confidence 368999999999999999998 78999999998764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.95 E-value=0.018 Score=51.02 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH---HhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL---LSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L---~~a~i~~a 478 (663)
..++++|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|..... |.++++.. ++.. ...
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak----------~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~-~g~ 94 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYAR----------AMGLHVAAIDIDDAKLELARKLGASLTV-NARQEDPVEAIQRDI-GGA 94 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHH-SSE
T ss_pred CCCEEEEeeccccHHHHHHHHH----------HcCCccceecchhhHHHhhhccCccccc-cccchhHHHHHHHhh-cCC
Confidence 4567999999999999999887 7889999999999999999998865443 44444433 3322 234
Q ss_pred cEEEEEcCCH
Q 006034 479 KAVMIMYTDK 488 (663)
Q Consensus 479 ~~vv~~~~dd 488 (663)
+.++..+...
T Consensus 95 ~~~i~~~~~~ 104 (166)
T d1llua2 95 HGVLVTAVSN 104 (166)
T ss_dssp EEEEECCSCH
T ss_pred cccccccccc
Confidence 5555665554
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.94 E-value=0.061 Score=47.97 Aligned_cols=125 Identities=14% Similarity=-0.049 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|+|.|-.++.++..|. +.+.++.++.+++++++.+.+. ...+..-+ +.+...+++
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~----------~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~------~~~~~~~~~ 80 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLL----------QAQQNIVLANRTFSKTKELAERFQPYGNIQAVS------MDSIPLQTY 80 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEE------GGGCCCSCC
T ss_pred CCCEEEEECCcHHHHHHHHHHc----------ccCceeeeccchHHHHHHHHHHHhhccccchhh------hcccccccc
Confidence 4568999999999999999997 5668999999999999888752 11222111 112346789
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec-Chh---hHHHHHHcCCCeEEcCchHHHHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-DMM---HLLDLKKAGATDAILENAETSLQLGSK 542 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-~~~---~~~~l~~~Gad~vi~p~~~~~~~la~~ 542 (663)
|.+|-+|+-...+-..-.......++..++--+. ++. ..+..++.|...+++-....-.|-+..
T Consensus 81 diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g~~~v~~Gl~Ml~~Qa~~~ 148 (171)
T d1p77a1 81 DLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHS 148 (171)
T ss_dssp SEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEECSHHHHHHHHHHH
T ss_pred ceeeecccccccccccchhhhhhcccceeeeeeccCcccHHHHHHHHHcCCCcccCcHHHHHHHHHHH
Confidence 9888888753222111111111222334555454 343 356678899988877665433343333
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.86 E-value=0.023 Score=54.51 Aligned_cols=92 Identities=14% Similarity=0.258 Sum_probs=64.5
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---------HHHHHhcCCCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------VKESRKLGFPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---------~~~~~~~~~~vi~GD~~~~~~L~ 471 (663)
.+++|+|.|. |.+|+.+++.|. +.|++|+++++++.. .+.+...+..++.||.++.+.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 71 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASL----------DLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLV 71 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhh
Confidence 4678999997 999999999997 789999999986543 23334467899999999999887
Q ss_pred hcCCCCCcEEEEEcCCH--HHHHHHHHHHHHhCCC
Q 006034 472 SAGITSPKAVMIMYTDK--KRTIEAVQRLRLAFPA 504 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~dd--~~n~~~~~~~r~~~~~ 504 (663)
++ .+.++.++...... .........+++.+..
T Consensus 72 ~~-~~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~~ 105 (307)
T d1qyca_ 72 EA-VKNVDVVISTVGSLQIESQVNIIKAIKEVGTV 105 (307)
T ss_dssp HH-HHTCSEEEECCCGGGSGGGHHHHHHHHHHCCC
T ss_pred hh-hhhceeeeecccccccchhhHHHHHHHHhccc
Confidence 64 34566665555432 2223334445555543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.85 E-value=0.0051 Score=54.75 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++|+|.|.+|+.+++.|. +.|. ++.+..++.++++.+.+ .+..+. +-+-+.+ .+.++|
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~----------~~g~~~i~v~nRt~~ka~~l~~~~~~~~~-----~~~~~~~-~l~~~D 86 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLV----------DRGVRAVLVANRTYERAVELARDLGGEAV-----RFDELVD-HLARSD 86 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHH----------HHCCSEEEEECSSHHHHHHHHHHHTCEEC-----CGGGHHH-HHHTCS
T ss_pred ccCeEEEECCCHHHHHHHHHHH----------hcCCcEEEEEcCcHHHHHHHHHhhhcccc-----cchhHHH-HhccCC
Confidence 3457999999999999999997 6676 69999999999887776 343332 2233333 367999
Q ss_pred EEEEEcCCH
Q 006034 480 AVMIMYTDK 488 (663)
Q Consensus 480 ~vv~~~~dd 488 (663)
.+|.+|+.+
T Consensus 87 ivi~atss~ 95 (159)
T d1gpja2 87 VVVSATAAP 95 (159)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999999864
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.84 E-value=0.053 Score=47.54 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHH----h----cC-CCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESR----K----LG-FPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~----~----~~-~~vi~GD~~~~~~L~ 471 (663)
.+++|.|+|.|++|+.++..|. ..+ .+++++|.|+++++-.. + .+ ...+.++...++.+
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~----------~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~- 74 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCA----------LRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL- 74 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH-
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------hCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh-
Confidence 4678999999999999998776 333 47999999987753322 1 12 22344433334444
Q ss_pred hcCCCCCcEEEEEcC--------------CH--HHHHH----HHHHHHHhCCCCcEEEEecChh
Q 006034 472 SAGITSPKAVMIMYT--------------DK--KRTIE----AVQRLRLAFPAIPIYARAQDMM 515 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~--------------dd--~~n~~----~~~~~r~~~~~~~iia~~~~~~ 515 (663)
++||.++++.+ .| ..|.. ++..+++.+|+ -++.-+.||-
T Consensus 75 ----~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPv 133 (154)
T d1pzga1 75 ----TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPL 133 (154)
T ss_dssp ----TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSH
T ss_pred ----cCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcH
Confidence 58888877653 11 23443 44556667888 5555566665
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.034 Score=49.36 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++|+|.|.|.+|...++.++ ..|.+++++|.++++.+.+++.|...+. |..+++.. +...+.+|.+
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak----------~~Ga~~i~~~~~~~~~~~a~~lGad~~i-~~~~~~~~-~~~~~~~D~v 97 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAH----------AMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEM-AAHLKSFDFI 97 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHH-HTTTTCEEEE
T ss_pred CCCEEEEeccchHHHHHHHHhh----------cccccchhhccchhHHHHHhccCCcEEE-ECchhhHH-HHhcCCCcee
Confidence 4568999999999999999887 7899999999999999988888866544 56666544 3455789998
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+-+++..
T Consensus 98 id~~g~~ 104 (168)
T d1uufa2 98 LNTVAAP 104 (168)
T ss_dssp EECCSSC
T ss_pred eeeeecc
Confidence 8888764
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.76 E-value=0.032 Score=44.80 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=63.7
Q ss_pred CCCCcEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 401 EGSEPVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+..+|+-++|-|-.|- .+|+.|. ++|++|..-|.+ .+..+.+.+.|..+..|+..+ +++++
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~----------~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~-------~i~~~ 68 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILL----------NEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEE-------HIEGA 68 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHH----------HHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGG-------GGTTC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHH----------hCCCEEEEEeCCCChhhhHHHHCCCeEEECCccc-------cCCCC
Confidence 3567899999999994 5699997 899999999986 455788888999888876542 34578
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
|.+|....=.++|.+ ...||+.+
T Consensus 69 d~vV~S~AI~~~npe-l~~A~~~g 91 (96)
T d1p3da1 69 SVVVVSSAIKDDNPE-LVTSKQKR 91 (96)
T ss_dssp SEEEECTTSCTTCHH-HHHHHHTT
T ss_pred CEEEECCCcCCCCHH-HHHHHHcC
Confidence 877666655566777 44577775
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.75 E-value=0.027 Score=50.57 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCE-EE-ecCCCHHHH-HhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPI-LY-GDASRPAVL-LSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~v-i~-GD~~~~~~L-~~a~i~~ 477 (663)
..+.|+|+|.|.+|...++.++ ..|. +|+++|.|+++.+.+++.|... +. -|....+.+ +.-+=+.
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak----------~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAK----------LRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHH----------TTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEcCCcchhhhhhhhh----------cccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccC
Confidence 4568999999999999999997 6775 7999999999999999988543 32 222223333 3334455
Q ss_pred CcEEEEEcCCHH
Q 006034 478 PKAVMIMYTDKK 489 (663)
Q Consensus 478 a~~vv~~~~dd~ 489 (663)
+|.++-+++..+
T Consensus 97 ~D~vid~~g~~~ 108 (174)
T d1jqba2 97 VDRVIMAGGGSE 108 (174)
T ss_dssp EEEEEECSSCTT
T ss_pred cceEEEccCCHH
Confidence 899988888653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.68 E-value=0.012 Score=52.35 Aligned_cols=73 Identities=19% Similarity=0.123 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
...+++|+|.|..|++-++... ..|.+|.++|.++++.+++.+..-.-+.--..+++.+++ .+.+||.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~----------~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~-~~~~aDiv 99 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAV----------GLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET-AVAEADLL 99 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEE
T ss_pred CCcEEEEECCChHHHHHHHHHh----------hCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHH-hhccCcEE
Confidence 4578999999999999999987 789999999999999988876321111222345555544 45678866
Q ss_pred EEEc
Q 006034 482 MIMY 485 (663)
Q Consensus 482 v~~~ 485 (663)
|-+.
T Consensus 100 I~aa 103 (168)
T d1pjca1 100 IGAV 103 (168)
T ss_dssp EECC
T ss_pred EEee
Confidence 5443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.68 E-value=0.087 Score=45.72 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----cCCCEEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~~~~vi~GD~~~~~~L~~a 473 (663)
..++|.|+|.|++|..++..|.. +....+++++|.++++.+- +.+ ...++..+. .|.+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~--------~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~-~d~~----- 70 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMN--------QGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-GDYD----- 70 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-CCGG-----
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--------cCCCceEEEEeeccccccchhccHhhCccccCCCeEEEE-CCHH-----
Confidence 45579999999999999998862 1233479999999987432 221 123333332 2332
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
..++||.+|++.+. | ..|.. ++..+++.+|+. ++..+.||-+
T Consensus 71 ~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a-~~ivvtNPvd 127 (148)
T d1ldna1 71 DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQG-LFLVATNPVD 127 (148)
T ss_dssp GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCS-EEEECSSSHH
T ss_pred HhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCc-eEEEecCccH
Confidence 35689988876643 2 34544 445567778884 5666677654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.66 E-value=0.021 Score=52.80 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=54.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEE--eCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF--DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi--d~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+|+|.|. |.+|+.+++.|. ++|++|.++ .++++..+... .+..++.||.+|++.+.++ ++++|.
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll----------~~g~~v~v~~~~R~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-~~~~d~ 71 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLK----------EGSDKFVAKGLVRSAQGKEKIG-GEADVFIGDITDADSINPA-FQGIDA 71 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHH----------HTTTTCEEEEEESCHHHHHHTT-CCTTEEECCTTSHHHHHHH-HTTCSE
T ss_pred CEEEEECCccHHHHHHHHHHH----------HCCCcEEEEEEcCCHHHHHhcc-CCcEEEEeeeccccccccc-ccccee
Confidence 47999995 999999999997 677776554 56776655443 4789999999999999875 567787
Q ss_pred EEEEc
Q 006034 481 VMIMY 485 (663)
Q Consensus 481 vv~~~ 485 (663)
++.+.
T Consensus 72 vi~~a 76 (252)
T d2q46a1 72 LVILT 76 (252)
T ss_dssp EEECC
T ss_pred eEEEE
Confidence 77554
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.017 Score=55.04 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=55.2
Q ss_pred CCCcE-EEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHh-
Q 006034 402 GSEPV-VIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLS- 472 (663)
Q Consensus 402 ~~~~v-iI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~- 472 (663)
..+++ +|-|.++ +|+.++++|. ++|.+|++.|+|+++.++..+ . ....+.+|.+|++-.++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la----------~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFA----------KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHH
Confidence 45554 5557765 9999999998 899999999999998776653 3 35577899999987664
Q ss_pred -----cCCCCCcEEEEEc
Q 006034 473 -----AGITSPKAVMIMY 485 (663)
Q Consensus 473 -----a~i~~a~~vv~~~ 485 (663)
....+-|.+|...
T Consensus 75 ~~~i~~~~g~idilinna 92 (244)
T d1yb1a_ 75 AKKVKAEIGDVSILVNNA 92 (244)
T ss_dssp HHHHHHHTCCCSEEEECC
T ss_pred HHHHHHHcCCCceeEeec
Confidence 2455677666544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.60 E-value=0.012 Score=53.10 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~ 471 (663)
...+|+|+|.|..|.+.++.-. ..|..|.++|.++++.+++.+.+-..+.=+..+++.++
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~----------~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~ 87 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAK----------RLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAE 87 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCSTTHHHHHHTTCEECCC---------
T ss_pred CCcEEEEEcCcHHHHHHHHHHH----------HcCCEEEEEeccHHHHHHHHHhhcceEEEecccccccc
Confidence 3568999999999999999886 78999999999999999999876555543333333333
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.51 E-value=0.09 Score=45.52 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=61.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----cCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~~~~vi~GD~~~~~~L~~a~i 475 (663)
++|.|+|.|++|..++-.|.. +..-.+++++|.|+++++- +.+ .+.+..... .|.+. +
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~--------~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~-~d~~~-----l 67 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIA--------QGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI-NDWAA-----L 67 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE-SCGGG-----G
T ss_pred CeEEEECcCHHHHHHHHHHHh--------cCCCceEEEEecccchhhhHHHhhhccccccCCccceec-cCHHH-----h
Confidence 579999999999999998851 1223579999999998532 221 233322222 23333 4
Q ss_pred CCCcEEEEEcCC-------------H--HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 006034 476 TSPKAVMIMYTD-------------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 476 ~~a~~vv~~~~d-------------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~ 516 (663)
++||.+|++.+. | +.|..+ +..+++.+|+ .++..+.||-+
T Consensus 68 ~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~-aivivvtNPvD 126 (146)
T d1hyha1 68 ADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH-GVLVVISNPVD 126 (146)
T ss_dssp TTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCC-SEEEECSSSHH
T ss_pred ccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCC-eEEEEecCcHH
Confidence 789988887542 1 235443 3445666787 55666777654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.45 E-value=0.059 Score=46.53 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH----HHHh----cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESRK----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~----~~~~----~~~~vi~GD~~~~~~L~~a~ 474 (663)
+++|.|+|.|++|..++-.|.. +....+++++|.++++++ ++.+ .+...+. + .+. ..
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~--------~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~-~-~~~-----~~ 65 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMAL--------RQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A-GDY-----SD 65 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--------TTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CG-----GG
T ss_pred CCeEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe-e-CcH-----HH
Confidence 3579999999999999988862 123347999999998742 2222 1111221 1 122 23
Q ss_pred CCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 475 ITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 475 i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.+++|.++++.+. | ..|.. ++..+++.+|+ -++..+.||-+
T Consensus 66 ~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~-ai~ivvtNPvd 121 (142)
T d1y6ja1 66 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH-GVILVVSNPVD 121 (142)
T ss_dssp GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCS-CEEEECSSSHH
T ss_pred hCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCC-ceEEEecChHH
Confidence 6789988776442 1 23333 44456667787 45666777654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.41 E-value=0.06 Score=48.09 Aligned_cols=76 Identities=13% Similarity=0.255 Sum_probs=55.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCC-----
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPS-VVKESRKLGFPILYGDASRPAVLLSAGIT----- 476 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~----- 476 (663)
-+|-|-||||+|+.+.+.+.+ +++.+++.| |.+++ ....+.++++...+++........+.++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~---------~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTK---------QDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTL 73 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHT---------CTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBH
T ss_pred EEEEEECCCHHHHHHHHHHHh---------CCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchh
Confidence 479999999999999999972 566777766 54443 35566678889988888777777776654
Q ss_pred -----CCcEEEEEcCCH
Q 006034 477 -----SPKAVMIMYTDK 488 (663)
Q Consensus 477 -----~a~~vv~~~~dd 488 (663)
++|.|+=+|+--
T Consensus 74 ~~~~~~vDvViEcTG~f 90 (172)
T d2czca2 74 NDLLEKVDIIVDATPGG 90 (172)
T ss_dssp HHHHTTCSEEEECCSTT
T ss_pred hhhhccCCEEEECCCCC
Confidence 667666666653
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=94.33 E-value=0.14 Score=42.37 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=68.0
Q ss_pred CCCEEEEeCChHHHHHHH----hcCCCEEEecCCC-HHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEE
Q 006034 436 GWPFVAFDLNPSVVKESR----KLGFPILYGDASR-PAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 436 ~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~-~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia 509 (663)
|.+|.+||.|+...+.++ +.|+.++. -+++ .+.++.+.-.+.|.+++-.+=. ..-+..+...|+.+|+++++.
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~-~a~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~~~~~~pvi~ 79 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAG-EATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIV 79 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEE-EECCHHHHHHHHHhccCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 568999999988755544 47777652 2233 4566665556789888776653 455677888899999999777
Q ss_pred Ee--cChhhHHHHHHcCCCeEEcCc
Q 006034 510 RA--QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 510 ~~--~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.. ++.+......+.||+..+.-.
T Consensus 80 ls~~~~~~~~~~a~~~Ga~~yl~KP 104 (118)
T d1u0sy_ 80 CSAMGQQAMVIEAIKAGAKDFIVKP 104 (118)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESS
T ss_pred EEccCCHHHHHHHHHcCCCEEEECC
Confidence 65 355677778899999877654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.015 Score=53.19 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=35.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
++|.|+|.|.+|+.+|..+. ..|++|++.|.|++..+++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a----------~~G~~V~l~D~~~~~l~~a~ 44 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAA----------ATGHTVVLVDQTEDILAKSK 44 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHH----------hCCCcEEEEECChHHHHHHH
Confidence 68999999999999999997 79999999999998766544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.24 E-value=0.054 Score=47.71 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC--HHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR--PAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~--~~~L~~a~i~~a~ 479 (663)
+.++++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+.....+ .+.+++.. +..+
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~----------~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~-~~~~ 95 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAK----------AMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-GGVH 95 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH-SSEE
T ss_pred CCCEEEEeecccchhhhhHHHh----------cCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhccccc-CCCc
Confidence 4568999999999999999887 788999999999999999999998877654433 22333332 3445
Q ss_pred EEEEEcCCH
Q 006034 480 AVMIMYTDK 488 (663)
Q Consensus 480 ~vv~~~~dd 488 (663)
.++..+...
T Consensus 96 ~~v~~~~~~ 104 (168)
T d1rjwa2 96 AAVVTAVSK 104 (168)
T ss_dssp EEEESSCCH
T ss_pred eEEeecCCH
Confidence 555555553
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=94.23 E-value=0.013 Score=51.26 Aligned_cols=86 Identities=7% Similarity=-0.073 Sum_probs=53.2
Q ss_pred EEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcC
Q 006034 407 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486 (663)
Q Consensus 407 iI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~ 486 (663)
=++|.|++|+.+++.|. +.++...+.++++++.+.+.+.+... ..+.. .-++++|.++++.+
T Consensus 3 gfIG~G~mg~~l~~~L~----------~~~~~~~v~~R~~~~~~~l~~~~~~~-~~~~~-------~~~~~~DiVil~v~ 64 (153)
T d2i76a2 3 NFVGTGTLTRFFLECLK----------DRYEIGYILSRSIDRARNLAEVYGGK-AATLE-------KHPELNGVVFVIVP 64 (153)
T ss_dssp EEESCCHHHHHHHHTTC--------------CCCEECSSHHHHHHHHHHTCCC-CCSSC-------CCCC---CEEECSC
T ss_pred EEEeCcHHHHHHHHHHH----------hCCCEEEEEeCChhhhcchhhccccc-ccchh-------hhhccCcEEEEecc
Confidence 47999999999999996 44444468999999999998865332 12211 24678999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 006034 487 DKKRTIEAVQRLRLAFPAIPIYARAQDM 514 (663)
Q Consensus 487 dd~~n~~~~~~~r~~~~~~~iia~~~~~ 514 (663)
||.. ...++++..+-+++.-....
T Consensus 65 d~~i----~~v~~~l~~~~~ivi~~s~~ 88 (153)
T d2i76a2 65 DRYI----KTVANHLNLGDAVLVHCSGF 88 (153)
T ss_dssp TTTH----HHHHTTTCCSSCCEEECCSS
T ss_pred chhh----hHHHhhhcccceeeeecccc
Confidence 8743 23345554322555554443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.19 E-value=0.14 Score=45.02 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH----HHHh----cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESRK----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~----~~~~----~~~~vi~GD~~~~~~L~~a~ 474 (663)
+.+|.|+|.|++|..+|..|.. .....+++++|.|+++++ ++.+ .+.+.+.+. .|.+ .
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~--------~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~-~d~~-----~ 84 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILL--------KGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG-KDYN-----V 84 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--------TTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEE-SSGG-----G
T ss_pred CCeEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEec-cchh-----h
Confidence 4579999999999999999872 122347999999998753 2322 234444433 2333 3
Q ss_pred CCCCcEEEEEcCC---------H--HHHHHHHH----HHHHhCCCCcEEEEecChhh
Q 006034 475 ITSPKAVMIMYTD---------K--KRTIEAVQ----RLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 475 i~~a~~vv~~~~d---------d--~~n~~~~~----~~r~~~~~~~iia~~~~~~~ 516 (663)
..++|.+|++.+. | +.|..+.. .+++.+|+ -++..+.||-+
T Consensus 85 ~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~-~ivivvtNPvD 140 (159)
T d2ldxa1 85 SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPD-CKIIVVTNPVD 140 (159)
T ss_dssp GTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTT-CEEEECSSSHH
T ss_pred hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCC-eEEEEeCCcHH
Confidence 4688878777643 1 45665443 35566777 56666666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.18 E-value=0.038 Score=49.51 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEe-cCCC---HHHHHhcCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYG-DASR---PAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~G-D~~~---~~~L~~a~i~ 476 (663)
..+.|+|+|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+.= ...| .+..++.+=.
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak----------~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCK----------IAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECCChHHHHHHHHHH----------HhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence 4568999999999999999997 6776 5888899999999999988765542 2222 3344455556
Q ss_pred CCcEEEEEcCCHHH
Q 006034 477 SPKAVMIMYTDKKR 490 (663)
Q Consensus 477 ~a~~vv~~~~dd~~ 490 (663)
.+|.++-+++..+.
T Consensus 98 G~d~vie~~G~~~~ 111 (174)
T d1e3ia2 98 GVDYSLDCAGTAQT 111 (174)
T ss_dssp CBSEEEESSCCHHH
T ss_pred CCcEEEEecccchH
Confidence 89999999988654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.17 E-value=0.027 Score=53.56 Aligned_cols=70 Identities=16% Similarity=0.048 Sum_probs=52.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------~ 474 (663)
.++|.|. +-+|+.+++.|. ++|++|++.|+|+++.+.+.+ .....+.+|.+|++-.+++ .
T Consensus 8 ~alITGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 8 VALVSGGARGMGASHVRAMV----------AEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 4556676 559999999998 899999999999999887764 3356788999998766532 1
Q ss_pred CCCCcEEEEE
Q 006034 475 ITSPKAVMIM 484 (663)
Q Consensus 475 i~~a~~vv~~ 484 (663)
...-|.+|-.
T Consensus 78 ~g~idilinn 87 (244)
T d1nffa_ 78 FGGLHVLVNN 87 (244)
T ss_dssp HSCCCEEEEC
T ss_pred hCCCeEEEEC
Confidence 2355655544
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.031 Score=53.26 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=54.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhc------CC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a------~i 475 (663)
.++|.|. +-+|+.+++.|. ++|.+|++.|+|++..+.+.++ +...+.+|.+|++-.+++ ..
T Consensus 8 ~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 8 VVVVTGGGRGIGAGIVRAFV----------NSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp EEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 4666665 779999999998 7999999999999999888763 456778999998876542 22
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+-|.+|-..
T Consensus 78 g~iDilVnnA 87 (250)
T d1ydea1 78 GRLDCVVNNA 87 (250)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEecc
Confidence 3556665443
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.05 E-value=0.08 Score=47.50 Aligned_cols=99 Identities=8% Similarity=0.060 Sum_probs=64.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCC---CEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGF---PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~---~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.|+|+|.+|+..++.+.+ ..+.+++ +.|.|+++.+.+.+ .+. .-++.| -++.+++ .+.|
T Consensus 3 ki~iIG~G~~g~~~~~~l~~---------~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~---~~iD 68 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHL---------APNATISGVASRSLEKAKAFATANNYPESTKIHGS--YESLLED---PEID 68 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESS--HHHHHHC---TTCC
T ss_pred EEEEEcCCHHHHHHHHHHHh---------CCCCEEEEEEeCCccccccchhccccccceeecCc--HHHhhhc---cccc
Confidence 58999999999999999962 4567777 45999999877765 332 223333 2234443 4689
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL 520 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l 520 (663)
+|+++++++ .....+..+-+.+ .++++. +.+.++.+.+
T Consensus 69 ~v~I~tp~~-~h~~~~~~~l~~g--~~v~~EKP~~~~~~e~~~l 109 (184)
T d1ydwa1 69 ALYVPLPTS-LHVEWAIKAAEKG--KHILLEKPVAMNVTEFDKI 109 (184)
T ss_dssp EEEECCCGG-GHHHHHHHHHTTT--CEEEECSSCSSSHHHHHHH
T ss_pred eeeecccch-hhcchhhhhhhcc--ceeecccccccCHHHHHHH
Confidence 999998875 4455555555554 466652 3455554444
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.90 E-value=0.045 Score=52.09 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCCCcEEE-EcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHh
Q 006034 401 EGSEPVVI-VGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 401 ~~~~~viI-~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~ 472 (663)
..+|++++ .|. +-+|+.+++.|. +.|.+|++.|+|++..+...+ .+ ...+.+|.+|++-.++
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la----------~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~ 76 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLA----------KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISE 76 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHT----------TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 35566554 466 569999999997 899999999999998766543 33 4567899999986653
Q ss_pred c------CCCCCcEEEEEc
Q 006034 473 A------GITSPKAVMIMY 485 (663)
Q Consensus 473 a------~i~~a~~vv~~~ 485 (663)
+ ...+-|.+|...
T Consensus 77 ~~~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 77 VINKILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHHHHCSCCCEEEECC
T ss_pred HHHHHHHhcCCceeeeecc
Confidence 2 334677665543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=93.80 E-value=0.035 Score=52.54 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=52.8
Q ss_pred CcEEEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cC--CCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LG--FPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~--~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|.++ +|+.+|+.|. ++|++|++.++|+++.++..+ .+ ...+++|.+|++-.++.
T Consensus 6 K~alItGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFA----------REGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4567778766 9999999998 899999999999998877665 33 34578899998877542
Q ss_pred CCCCCcEEEEE
Q 006034 474 GITSPKAVMIM 484 (663)
Q Consensus 474 ~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 76 ~~g~iDiLinn 86 (241)
T d2a4ka1 76 EFGRLHGVAHF 86 (241)
T ss_dssp HHSCCCEEEEG
T ss_pred HhCCccEeccc
Confidence 12356655553
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.035 Score=52.64 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCcE-EEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc----
Q 006034 403 SEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 403 ~~~v-iI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a---- 473 (663)
++++ +|.|. +-+|+.+++.|. ++|++|++.|+|+++.+.+.+ .....+..|.+|++-.+++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~----------~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLA----------ARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKI 72 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhh
Confidence 4455 44465 569999999998 899999999999999887764 2456788999998766542
Q ss_pred --CCCCCcEEEEE
Q 006034 474 --GITSPKAVMIM 484 (663)
Q Consensus 474 --~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 73 ~~~~g~iDilVnn 85 (243)
T d1q7ba_ 73 RAEFGEVDILVNN 85 (243)
T ss_dssp HHHTCSCSEEEEC
T ss_pred hcccCCcceehhh
Confidence 23467766644
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.77 E-value=0.025 Score=50.63 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=35.4
Q ss_pred cEEEE-cCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh
Q 006034 405 PVVIV-GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 454 (663)
Q Consensus 405 ~viI~-G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~ 454 (663)
+|.|+ |.|.+|+.+|+.|. +.|++|++.++|+++++.+.+
T Consensus 2 ki~vigGaG~iG~alA~~la----------~~G~~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLA----------TLGHEIVVGSRREEKAEAKAA 42 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------TTTCEEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHH
Confidence 37788 67999999999998 899999999999999877654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.67 E-value=0.039 Score=52.63 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=52.3
Q ss_pred EEEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcC--CCEEEecCCCHHHHHhc-----
Q 006034 406 VVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 406 viI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~--~~vi~GD~~~~~~L~~a----- 473 (663)
++|.|.++ +|+.+|+.|. ++|.+|++.|+|+++.+... +.+ ...+.+|.+|++-.+++
T Consensus 4 alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLV----------KDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR 73 (255)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 46777755 9999999998 78999999999999876654 333 45578999999877643
Q ss_pred -CCCCCcEEEEE
Q 006034 474 -GITSPKAVMIM 484 (663)
Q Consensus 474 -~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 74 ~~~g~iDilVnn 85 (255)
T d1gega_ 74 KTLGGFDVIVNN 85 (255)
T ss_dssp HHTTCCCEEEEC
T ss_pred HHhCCccEEEec
Confidence 34567877643
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=93.64 E-value=0.1 Score=45.45 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=67.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.++. ++.++++++.+.+.+.+... ....+. +.+++.++.+
T Consensus 2 kIg~IGlG~MG~~ma~~L~----------~~g~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~i~~ 61 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLA----------RRFPT-LVWNRTFEKALRHQEEFGSE----AVPLER-----VAEARVIFTC 61 (156)
T ss_dssp CEEEECCSTTHHHHHHHHH----------TTSCE-EEECSSTHHHHHHHHHHCCE----ECCGGG-----GGGCSEEEEC
T ss_pred eEEEEeHHHHHHHHHHHHH----------hCCCE-EEEeCCHHHHHHHHHHcCCc----cccccc-----ccceeEEEec
Confidence 5889999999999999997 66665 46777777766665533221 122222 3456778788
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcEEEEec--Ch----hhHHHHHHcCCCeEEcCc
Q 006034 485 YTDKKRTIEAVQRLRLAFPAIPIYARAQ--DM----MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r~~~~~~~iia~~~--~~----~~~~~l~~~Gad~vi~p~ 532 (663)
..+++.-......+.+...+-.++.-.. ++ +-.+.+++.|++.+=.|-
T Consensus 62 ~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapV 115 (156)
T d2cvza2 62 LPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPV 115 (156)
T ss_dssp CSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCE
T ss_pred ccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccc
Confidence 8877655544443333333334555433 33 334566777888777764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.64 E-value=0.036 Score=46.03 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=33.3
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
+..++++|+|.|.+|..+|..|. +.|.+|+++|+.++
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~----------~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYA----------NFGTKVTILEGAGE 56 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSS
T ss_pred hcCCeEEEECCCccceeeeeeec----------ccccEEEEEEecce
Confidence 45579999999999999999998 89999999997765
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=93.61 E-value=0.043 Score=52.24 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=53.5
Q ss_pred CCCcE-EEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc-
Q 006034 402 GSEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 402 ~~~~v-iI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a- 473 (663)
.++++ +|.|. +-+|+.+++.|. ++|.+|++.|++++..+.+.+ .....+.+|.+|++..+++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFV----------EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLF 73 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHH
Confidence 45555 45565 559999999998 899999999999998877654 2356788999999866532
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+-|.+|-..
T Consensus 74 ~~~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 74 DATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHHHHSSCCEEEECC
T ss_pred HHHHHHhCCceEEEecc
Confidence 223567665443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.61 E-value=0.044 Score=52.64 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=52.2
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc-
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a- 473 (663)
.+++ ++|.|. +-+|+.+|+.|. ++|.+|++.|+|+++.+++.+ .....+..|.+|++-.+++
T Consensus 4 L~gKvalITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~ 73 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFV----------RYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLV 73 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHH
Confidence 4444 555565 559999999998 799999999999999877664 2245678899998766542
Q ss_pred -----CCCCCcEEEE
Q 006034 474 -----GITSPKAVMI 483 (663)
Q Consensus 474 -----~i~~a~~vv~ 483 (663)
...+-|.+|-
T Consensus 74 ~~~~~~~g~iD~lVn 88 (268)
T d2bgka1 74 DTTIAKHGKLDIMFG 88 (268)
T ss_dssp HHHHHHHSCCCEEEE
T ss_pred HHHHHHcCCcceecc
Confidence 2235676664
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.57 E-value=0.015 Score=52.59 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=50.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHhcCCCEEEecCC------CHHHHHhcCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDAS------RPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~~~~~vi~GD~~------~~~~L~~a~i~ 476 (663)
+|.|+|.|.+|..+|..|. +.|++|.+..+ |++.++...+.+.+-.++... -.+-+++ -++
T Consensus 2 kI~ViGaG~~GtalA~~la----------~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 70 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLV----------DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK-CLE 70 (180)
T ss_dssp EEEEESCCHHHHHHHHHHH----------HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH-HHT
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHH-HHh
Confidence 4889999999999999998 78999999976 566677776533221111111 1122333 256
Q ss_pred CCcEEEEEcCCHH
Q 006034 477 SPKAVMIMYTDKK 489 (663)
Q Consensus 477 ~a~~vv~~~~dd~ 489 (663)
++|.++++++...
T Consensus 71 ~ad~Ii~avps~~ 83 (180)
T d1txga2 71 NAEVVLLGVSTDG 83 (180)
T ss_dssp TCSEEEECSCGGG
T ss_pred ccchhhcccchhh
Confidence 8899999998753
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.56 E-value=0.036 Score=52.93 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=54.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. +-+|+.+++.|. ++|.+|++.|+|+++.+.+.+ .....+.+|.+|++-.+++
T Consensus 6 K~alVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 75 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYV----------REGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLD 75 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHH----------HTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 45677776 679999999998 899999999999999877665 2355678999999877653
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+-|.+|-..
T Consensus 76 ~~g~iDilVnnA 87 (256)
T d1k2wa_ 76 RWGSIDILVNNA 87 (256)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCccEEEeec
Confidence 223667666543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.46 E-value=0.063 Score=48.20 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=50.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHH-HHHHhcCCCEEEecCCCHHHHHhcCCC------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVV-KESRKLGFPILYGDASRPAVLLSAGIT------ 476 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~-~~~~~~~~~vi~GD~~~~~~L~~a~i~------ 476 (663)
+|-|.||||+|+.++|.+.+ +++.+++.| |.+++.. ..+..+ ....++...+....++-++.
T Consensus 3 KVaINGfGRIGR~v~Ral~~---------~~dievVaInd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~g~~~ 72 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIK---------QPDMKLVGVAKTSPNYEAFIAHRR-GIRIYVPQQSIKKFEESGIPVAGTVE 72 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHT---------CTTEEEEEEECSSCSHHHHHHHHT-TCCEECCGGGHHHHHTTTCCCCCCHH
T ss_pred EEEEECCCHHHHHHHHHHHh---------CCCCEEEEEECCCCcHHHHHhccc-CcceeccCccceeccccceecCCchh
Confidence 58899999999999999983 667888887 4444433 333333 33456655555555555543
Q ss_pred ----CCcEEEEEcCCH
Q 006034 477 ----SPKAVMIMYTDK 488 (663)
Q Consensus 477 ----~a~~vv~~~~dd 488 (663)
++|.|+=+|+..
T Consensus 73 ~~~~~vDiViecTG~f 88 (178)
T d1b7go1 73 DLIKTSDIVVDTTPNG 88 (178)
T ss_dssp HHHHHCSEEEECCSTT
T ss_pred hhhhcCCEEEECCCCc
Confidence 678888888873
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=93.44 E-value=0.042 Score=53.11 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. +-+|+.+++.|. ++|.+|++.|+|+++.+++.+ .....+.+|.+|++..+++
T Consensus 6 K~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFV----------AEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHH
Confidence 35666665 789999999998 899999999999999877654 2356788999998876553
Q ss_pred CCCCCcEEEE
Q 006034 474 GITSPKAVMI 483 (663)
Q Consensus 474 ~i~~a~~vv~ 483 (663)
...+.|.+|-
T Consensus 76 ~~g~idilvn 85 (276)
T d1bdba_ 76 RFGKIDTLIP 85 (276)
T ss_dssp HHSCCCEEEC
T ss_pred HhCCcccccc
Confidence 2335665553
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=93.39 E-value=0.045 Score=51.99 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=54.2
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.| .+-+|+.+++.|. ++|++|++.|+|++..+...+.+..++..|.+|++-.+++ ...
T Consensus 6 K~alITGas~GIG~aia~~la----------~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 75 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFA----------REGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALG 75 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence 3456666 5779999999998 8999999999999887777777788899999998765442 224
Q ss_pred CCcEEEE
Q 006034 477 SPKAVMI 483 (663)
Q Consensus 477 ~a~~vv~ 483 (663)
+-|.+|-
T Consensus 76 ~iDiLVn 82 (248)
T d2d1ya1 76 RVDVLVN 82 (248)
T ss_dssp CCCEEEE
T ss_pred CCCeEEE
Confidence 6676664
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.39 E-value=0.026 Score=51.31 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=35.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
-++|.|+|.|.+|+.+|..+. ..|++|++.|.|++..++..
T Consensus 4 I~~vaViGaG~mG~~iA~~~a----------~~G~~V~l~D~~~~~l~~~~ 44 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSA----------SKGTPILMKDINEHGIEQGL 44 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHH----------hCCCeEEEEECCHHHHhhhh
Confidence 357999999999999998887 78999999999999766543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.35 E-value=0.05 Score=51.97 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=45.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcCC--CEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLGF--PILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~~--~vi~GD~~~~~~L~~ 472 (663)
+.++|.|. +.+|+.+++.|. ++|++|++.++|+++.+++. +.+. ..+..|.+|++-+++
T Consensus 7 K~alITGas~GIG~aia~~la----------~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 72 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELA----------GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDK 72 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHH
Confidence 45788885 559999999998 89999999999998766544 3343 457899999986543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.33 E-value=0.22 Score=42.80 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=60.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhcC---CC---EEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLG---FP---ILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~~---~~---vi~GD~~~~~~L~~a~i 475 (663)
+|.|+|. |++|+.++..|. .++ .+++++|.++.+.+...-.. +. ...+...+++.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~----------~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~----- 66 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLK----------NSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCL----- 66 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHH----------TCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHH-----
T ss_pred eEEEECCCChHHHHHHHHHH----------hCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHh-----
Confidence 5899995 999999999997 333 46999999987654432111 11 222222223333
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
++||.+|++.+. | +.|.. ++..+++.+|+ -++..+.||-+
T Consensus 67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~-~iiivvtNPvD 121 (144)
T d1mlda1 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPD-AMICIISNPVN 121 (144)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSCHH
T ss_pred CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCC-eEEEEecCchh
Confidence 688978776552 1 34554 34556777888 66667777765
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.072 Score=47.33 Aligned_cols=124 Identities=12% Similarity=-0.053 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC---CCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG---FPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~---~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|+|.|-.++.++-.|. +.|.++.++.+++++++.+.+.- ..+-.-+. .+....++
T Consensus 17 ~~k~vlIlGaGGaarai~~al~----------~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~------~~~~~~~~ 80 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLL----------SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSM------DELEGHEF 80 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCS------GGGTTCCC
T ss_pred CCCEEEEECCcHHHHHHHHHhc----------ccceEEEeccchHHHHHHHHHHHhhccccccccc------cccccccc
Confidence 3468999999999999999997 67788999999999998877621 22222221 12234678
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh---HHHHHHcCCCeEEcCchHHHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH---LLDLKKAGATDAILENAETSLQLGS 541 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~---~~~l~~~Gad~vi~p~~~~~~~la~ 541 (663)
|.+|-+|+-...+-..-.-.....++..++=.+.++.. .+..++.|...+++-....-.|-+.
T Consensus 81 dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~i~Gl~MLi~Qa~~ 146 (170)
T d1nyta1 81 DLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAH 146 (170)
T ss_dssp SEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEEECTHHHHHHHHHH
T ss_pred ceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCCHHHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 98887775321110000001113334233334555544 4445567887777776544334333
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.24 E-value=0.056 Score=51.38 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=51.5
Q ss_pred CcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-----hcC--CCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLG--FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-----~~~--~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ -+|+.+|+.|. ++|.+|++.|+|+++.++.. +.+ ...+.+|.+|++-.+++
T Consensus 6 K~~lITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~ 75 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLA----------EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 75 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH
Confidence 346667764 59999999998 89999999999998865433 223 34578999998876542
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+-|.+|-..
T Consensus 76 ~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 76 AVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 223667666543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.22 E-value=0.049 Score=52.10 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a---- 473 (663)
.++|.|. +-+|+.+++.|. ++|.+|++.|+|++..+.+.+ .+ ...+..|.+|++-.+++
T Consensus 7 ~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 7 VCLVTGAGGNIGLATALRLA----------EEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4566676 459999999998 899999999999998766543 33 45678999998765432
Q ss_pred --CCCCCcEEEEE
Q 006034 474 --GITSPKAVMIM 484 (663)
Q Consensus 474 --~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 77 ~~~~g~iDilVnn 89 (260)
T d1zema1 77 VRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHSCCCEEEEC
T ss_pred HHHhCCCCeehhh
Confidence 22456766643
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=0.16 Score=44.42 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=67.1
Q ss_pred cEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|+|++|+. ..+.+.+ .++.+++ +.|.|+++.+...+ .+.+. .++.+.|. ++.|+|
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~---------~~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~D~V 65 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAA---------ASDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLA----ASCDAV 65 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHS---------CSSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHH----TTCSEE
T ss_pred EEEEEcCCHHHHHHHHHHHHh---------CCCcEEEEEEechhHhhhhhhhcccccc----cccchhhh----hhcccc
Confidence 5899999999986 5677762 4566655 56899998877765 45442 23444443 468999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCeEE
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 529 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~vi 529 (663)
+++++++. -...+..+-+.+ .++++. +.+.++.+.+ ++.|.-..+
T Consensus 66 ~I~tp~~~-h~~~~~~al~~g--k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v 117 (164)
T d1tlta1 66 FVHSSTAS-HFDVVSTLLNAG--VHVCVDKPLAENLRDAERLVELAARKKLTLMV 117 (164)
T ss_dssp EECSCTTH-HHHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cccccchh-cccccccccccc--ceeeccccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 99998764 344555555554 367763 4555555444 556655444
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=93.17 E-value=0.065 Score=52.01 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred cCCCCcEEEE-c-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHH
Q 006034 400 YEGSEPVVIV-G-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVL 470 (663)
Q Consensus 400 ~~~~~~viI~-G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L 470 (663)
...+++++++ | .+-+|+.+|+.|. +.|.+|++.|+|+++.+...+ .....+..|.+|++..
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la----------~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v 90 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLS----------SLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMV 90 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHH
Confidence 3566665555 4 6889999999998 899999999999987554332 2345778999999987
Q ss_pred Hh------cCCCCCcEEEEEc
Q 006034 471 LS------AGITSPKAVMIMY 485 (663)
Q Consensus 471 ~~------a~i~~a~~vv~~~ 485 (663)
++ ....+.|.+|...
T Consensus 91 ~~~~~~~~~~~g~iDilvnnA 111 (294)
T d1w6ua_ 91 QNTVSELIKVAGHPNIVINNA 111 (294)
T ss_dssp HHHHHHHHHHTCSCSEEEECC
T ss_pred HHHhhhhhhhccccchhhhhh
Confidence 54 2335667666554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.17 E-value=0.12 Score=45.84 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEEEe--cCCC--HHHHHhcCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYG--DASR--PAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi~G--D~~~--~~~L~~a~i~ 476 (663)
.-+.|+|.|.|..|...++.+. ..+ .+|+++|.++++.+.+++.|.....- |..| .+..++..-.
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~----------~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCK----------AAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCcHHHHHHHHH----------HcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 4567999999999999999997 444 68999999999999999987665432 2222 3455666667
Q ss_pred CCcEEEEEcCCHHH
Q 006034 477 SPKAVMIMYTDKKR 490 (663)
Q Consensus 477 ~a~~vv~~~~dd~~ 490 (663)
.+|.++-+++....
T Consensus 98 G~D~vid~~G~~~~ 111 (176)
T d2jhfa2 98 GVDFSFEVIGRLDT 111 (176)
T ss_dssp CBSEEEECSCCHHH
T ss_pred CCCEEEecCCchhH
Confidence 89988888887543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.16 E-value=0.05 Score=52.01 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCC-cEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc
Q 006034 402 GSE-PVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~-~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a 473 (663)
.++ .++|.|.+ -+|+.+++.|. ++|++|++.|+|+++.++..+ .+ ...+.+|.+|++-.+++
T Consensus 6 L~GK~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~ 75 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELA----------SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQEL 75 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHH
Confidence 444 46667775 49999999998 799999999999998766543 33 45678999998765532
Q ss_pred ------CCC-CCcEEEEEc
Q 006034 474 ------GIT-SPKAVMIMY 485 (663)
Q Consensus 474 ------~i~-~a~~vv~~~ 485 (663)
... +-|.+|-..
T Consensus 76 ~~~~~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 76 MNTVANHFHGKLNILVNNA 94 (259)
T ss_dssp HHHHHHHTTTCCCEEEECC
T ss_pred HHHHHHHhCCCceEEEECC
Confidence 122 567666543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.032 Score=46.88 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
+..++++|+|.|.+|..+|..|. +.|.+|.++|.++.
T Consensus 21 ~~p~~~vIiG~G~ig~E~A~~l~----------~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 21 EIPKRLTIIGGGIIGLEMGSVYS----------RLGSKVTVVEFQPQ 57 (122)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSS
T ss_pred cCCCeEEEECCCchHHHHHHHHH----------hhCcceeEEEeccc
Confidence 35679999999999999999998 89999999998663
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.071 Score=50.76 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=52.6
Q ss_pred CCCCcEEEE-cC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHh
Q 006034 401 EGSEPVVIV-GF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 401 ~~~~~viI~-G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~ 472 (663)
+.+++++++ |. +-+|+.+|+.|. ++|.+|++.|+|+++.++..+ .+ ...+.+|.+|++-.++
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSA 77 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHH
Confidence 355555555 54 669999999998 899999999999988766543 33 4567899999876543
Q ss_pred c------CCCCCcEEEEE
Q 006034 473 A------GITSPKAVMIM 484 (663)
Q Consensus 473 a------~i~~a~~vv~~ 484 (663)
+ ...+-|.+|-.
T Consensus 78 ~~~~~~~~~g~iDilvnn 95 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNN 95 (255)
T ss_dssp HHHHHHHHHSSCCEEEEC
T ss_pred HHHHHHHHcCCCCEeeeC
Confidence 2 22356766554
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.039 Score=54.68 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=52.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC----ChHH---HHHHHhcCCCEEEecCCCHHHHHhc-CC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL----NPSV---VKESRKLGFPILYGDASRPAVLLSA-GI 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~----d~~~---~~~~~~~~~~vi~GD~~~~~~L~~a-~i 475 (663)
+|+|.|. |-+|+.+++.|. ++|++|+++|+ .++. .+.....+..+++||.+|.+.|+++ .-
T Consensus 2 KiLItG~tGfIG~~l~~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 71 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLL----------QNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD 71 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhc
Confidence 3788876 999999999998 78999999985 2222 3344456799999999999998765 22
Q ss_pred CCCcEEE
Q 006034 476 TSPKAVM 482 (663)
Q Consensus 476 ~~a~~vv 482 (663)
.++|.|+
T Consensus 72 ~~~d~Vi 78 (338)
T d1udca_ 72 HAIDTVI 78 (338)
T ss_dssp TTCSEEE
T ss_pred cCCCEEE
Confidence 3578776
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=93.13 E-value=0.057 Score=51.48 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=53.7
Q ss_pred CcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|.+ -+|+.+++.|. ++|.+|++.|+++++.+...++ ....+++|.+|++-.+++
T Consensus 6 K~alVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAV----------AAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 456777765 59999999998 7899999999999998777652 356788999998876542
Q ss_pred CCCCCcEEEEE
Q 006034 474 GITSPKAVMIM 484 (663)
Q Consensus 474 ~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 76 ~~g~iDilVnn 86 (254)
T d1hdca_ 76 EFGSVDGLVNN 86 (254)
T ss_dssp HHSCCCEEEEC
T ss_pred HcCCccEEEec
Confidence 22366766544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.11 E-value=0.27 Score=42.17 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=60.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----cCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~~~~vi~GD~~~~~~L~~a~i 475 (663)
+++.|+|.|++|..+|-.|.. +..-.+++++|.++++++- +.+ .+...+.+. .|.+. .
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~--------~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~-~~~~~-----~ 67 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQ--------RGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS-DDPEI-----C 67 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------TTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE-SCGGG-----G
T ss_pred CEEEEECCCHHHHHHHHHHHh--------cCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC-CCHHH-----h
Confidence 468999999999999988852 1234479999999987542 222 223333322 33332 4
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.++|.+|++.+. | ..|.. ++..+++.+|+ -++..+.||-+
T Consensus 68 ~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~-ai~ivvtNPvD 122 (143)
T d1llda1 68 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPN-AIYMLITNPVD 122 (143)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEECCSSHH
T ss_pred hCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCC-eEEEEeCCchH
Confidence 678988877653 1 23444 34455666777 45555666644
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.021 Score=47.64 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCcc-----------hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH
Q 006034 402 GSEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~viI~G~g~~-----------g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L 470 (663)
.+++++|+|.|+. +.+.++.|+ +.|+++++|..||+.+..-.+....++.--.+-+.++
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk----------~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~ 72 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALR----------EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVL 72 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHH----------HTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHH----------hcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHH
Confidence 3568999999763 567788997 8999999999999988754444445555444555566
Q ss_pred HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 471 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+-...++.|.+++..+.-. -+.++..+.+.+
T Consensus 73 ~Ii~~E~p~~ii~~~GGQt-alnla~~L~~~g 103 (121)
T d1a9xa4 73 EIVRIEKPKGVIVQYGGQT-PLKLARALEAAG 103 (121)
T ss_dssp HHHHHHCCSEEECSSSTHH-HHTTHHHHHHTT
T ss_pred HHHHHhCCCEEEeehhhhh-HHHHHHHHHHcC
Confidence 6578889999988888743 333444444443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.09 E-value=0.049 Score=51.92 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=53.4
Q ss_pred CCCcE-EEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc---
Q 006034 402 GSEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 402 ~~~~v-iI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a--- 473 (663)
.++++ +|.|. +-+|+.+++.|. ++|.+|++.|+|+++.+++.+ .....+.+|.+|++-.+++
T Consensus 4 L~gK~alITGas~GIG~aia~~la----------~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLL----------GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHH
Confidence 45555 44465 459999999998 899999999999999877765 2345677999998776542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+-|.+|-..
T Consensus 74 ~~~~~g~iDilVnnA 88 (253)
T d1hxha_ 74 VQRRLGTLNVLVNNA 88 (253)
T ss_dssp HHHHHCSCCEEEECC
T ss_pred HHHHhCCCCeEEecc
Confidence 223567665544
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.03 E-value=0.14 Score=40.27 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=62.8
Q ss_pred cEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
|+=+||-|-.|- .+|+.|. ++|++|..=|.++ +..+.+++.|..+..|... .+++++|.+|
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~----------~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~-------~~i~~~d~vV 65 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEF----------SNGNDVYGSNIEETERTAYLRKLGIPIFVPHSA-------DNWYDPDLVI 65 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSSCCHHHHHHHHTTCCEESSCCT-------TSCCCCSEEE
T ss_pred EEEEEeECHHHHHHHHHHHH----------hCCCeEEEEeCCCChhHHHHHHCCCeEEeeecc-------cccCCCCEEE
Confidence 466789999988 5788887 8999999999987 5678899999998877332 3457899776
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEE
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~ii 508 (663)
....=.++|.+ ...||+.+ ++|+
T Consensus 66 ~SsAI~~~npe-l~~A~~~g--Ipv~ 88 (89)
T d1j6ua1 66 KTPAVRDDNPE-IVRARMER--VPIE 88 (89)
T ss_dssp ECTTCCTTCHH-HHHHHHTT--CCEE
T ss_pred EecCcCCCCHH-HHHHHHcC--CCcc
Confidence 66554556666 66788875 4443
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.02 E-value=0.025 Score=51.55 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=51.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEE--EecCCCHH-----HHHhcCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPIL--YGDASRPA-----VLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi--~GD~~~~~-----~L~~a~i~ 476 (663)
++|.|+|.|.+|..+|..|. +.|++|.+.++|++.++.+.+.+.+.. .|--..+. -++++ ++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La----------~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a-~~ 76 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLS----------KKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKA-YN 76 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHH----------TTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHH-HT
T ss_pred ceEEEECCCHHHHHHHHHHH----------HcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhc-cC
Confidence 46999999999999999998 789999999999999998875332110 00000000 12222 45
Q ss_pred CCcEEEEEcCCH
Q 006034 477 SPKAVMIMYTDK 488 (663)
Q Consensus 477 ~a~~vv~~~~dd 488 (663)
++|.++++++..
T Consensus 77 ~ad~iiiavPs~ 88 (189)
T d1n1ea2 77 GAEIILFVIPTQ 88 (189)
T ss_dssp TCSCEEECSCHH
T ss_pred CCCEEEEcCcHH
Confidence 788888888864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.01 E-value=0.11 Score=44.56 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=58.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h----cC-CCEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K----LG-FPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~----~~-~~vi~GD~~~~~~L~~a~i 475 (663)
++.|+|.|++|..++..|.. .....+++++|.|+++.+... + .. ...+..+ +|.+. .
T Consensus 2 KI~IIGaG~VG~~la~~l~~--------~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~-~~~~~-----~ 67 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAE--------KQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS-NDYAD-----T 67 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------TTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SCGGG-----G
T ss_pred EEEEECcCHHHHHHHHHHHh--------CCCCceEEEeccccccchhhhhhhhcccchhcccceEEec-CCHHH-----h
Confidence 47899999999999998862 122358999999998744322 1 11 2223322 33433 4
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
+++|.++++.+. | +.|.. ++..+++.+|+. ++..+.||-+
T Consensus 68 ~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~a-ivivvtNPvd 122 (142)
T d1guza1 68 ANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNP-IIIVVSNPLD 122 (142)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSC-EEEECCSSHH
T ss_pred cCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCe-EEEEecCChH
Confidence 688988887642 1 23433 344566667774 5555666644
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=92.99 E-value=0.17 Score=41.82 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=66.5
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
.+|.+||.|+...+.++ +.|+.+..-. +-.+.++...-.+.|.+++-..=. ..=+..+...|+..|+++++...
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g~~v~~a~-~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~~~~~pvi~lt 80 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAA-NGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT 80 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEeC-CHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 57899999998755544 4788877533 333455555446788777665532 34467888899999998877765
Q ss_pred --cChhhHHHHHHcCCCeEEcCc
Q 006034 512 --QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 512 --~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.+.++.....++|++..+.-.
T Consensus 81 ~~~~~~~~~~a~~~Ga~~yl~KP 103 (119)
T d1peya_ 81 AYGELDMIQESKELGALTHFAKP 103 (119)
T ss_dssp SSCCHHHHHHHHHTTCCEEEESS
T ss_pred cCCCHHHHHHHHHCCCCEEEECC
Confidence 356777788999999877643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.044 Score=52.32 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC----CCEEEecCCCHHHHH
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG----FPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~----~~vi~GD~~~~~~L~ 471 (663)
.+++ ++|.|. +.+|+.+|+.|. ++|.+|++.++|+++.+.+.+ .+ ...++.|.+|++-.+
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la----------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~ 77 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALV----------QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDIL 77 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHH
Confidence 4445 455554 779999999998 799999999999998776543 32 346789999988554
Q ss_pred hc------CCCCCcEEEEEc
Q 006034 472 SA------GITSPKAVMIMY 485 (663)
Q Consensus 472 ~a------~i~~a~~vv~~~ 485 (663)
++ ...+-|.+|-..
T Consensus 78 ~~v~~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 78 SMFSAIRSQHSGVDICINNA 97 (257)
T ss_dssp HHHHHHHHHHCCCSEEEECC
T ss_pred HHHHHHHHhcCCCCEEEecc
Confidence 31 234567666544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.80 E-value=0.048 Score=45.68 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
..++++|+|.|..|-.+|..|. +.|.+|.++|..+..
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~----------~~g~~Vtli~~~~~~ 65 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATAR----------TAGVHVSLVETQPRL 65 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSST
T ss_pred cCCeEEEECcchhHHHHHHHhh----------cccceEEEEeecccc
Confidence 3578999999999999999998 789999999987653
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.062 Score=53.21 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=49.9
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-------------ChHHHHHHHhcCCCEEEecCCCHH
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-------------NPSVVKESRKLGFPILYGDASRPA 468 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-------------d~~~~~~~~~~~~~vi~GD~~~~~ 468 (663)
.++|+|.|. |-+|+.+++.|. +.|++|+++|. +.++.+........++.+|.+|.+
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll----------~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 71 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELL----------EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQG 71 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHH----------HTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHH
T ss_pred CCeEEEECCCcHHHHHHHHHHH----------HCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccc
Confidence 467999975 999999999997 78999999984 112234444567899999999999
Q ss_pred HHHhcCCC
Q 006034 469 VLLSAGIT 476 (663)
Q Consensus 469 ~L~~a~i~ 476 (663)
.++++-.+
T Consensus 72 ~l~~~~~~ 79 (346)
T d1ek6a_ 72 ALQRLFKK 79 (346)
T ss_dssp HHHHHHHH
T ss_pred cccccccc
Confidence 99875433
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.037 Score=45.96 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
..++++|+|.|..|..+|..|. +.|.+|.++|+.+
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~----------~~G~~Vtlve~~~ 54 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVIN----------GLGAKTHLFEMFD 54 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSS
T ss_pred CCCEEEEECCChhhHHHHHHhh----------ccccEEEEEeecc
Confidence 4578999999999999999998 7899999999865
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.15 Score=45.10 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=57.6
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH----HhcCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL----LSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L----~~a~i~ 476 (663)
..++|+|.|. |.+|....+..+ ..|.+|++++.++++.+.+++.|..-+. |.++++.. +..+-+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~----------~~G~~vi~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIAR----------AYGLKILGTAGTEEGQKIVLQNGAHEVF-NHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTSTTHHHHHHHHHCTT
T ss_pred CCCEEEEEecccccccccccccc----------ccCcccccccccccccccccccCccccc-ccccccHHHHhhhhhccC
Confidence 4567999996 999999999886 7899999999999999999988876554 66665433 334556
Q ss_pred CCcEEEEEcCC
Q 006034 477 SPKAVMIMYTD 487 (663)
Q Consensus 477 ~a~~vv~~~~d 487 (663)
..|.++-+.++
T Consensus 97 g~d~v~d~~g~ 107 (174)
T d1yb5a2 97 GIDIIIEMLAN 107 (174)
T ss_dssp CEEEEEESCHH
T ss_pred CceEEeecccH
Confidence 78877766654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.57 E-value=0.096 Score=46.56 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhcCCCEEEecCCCHHHHH---hcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLL---SAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~---~a~i~~ 477 (663)
..++|+|+|.|.+|...++.++ ..|.+ +++.|.++++.+.+++.|...+. |..+++..+ +.-=..
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak----------~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i-~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAK----------VCGASIIIAVDIVESRLELAKQLGATHVI-NSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHH----------HHTCSEEEEEESCHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTSC
T ss_pred CCCEEEEeCCCHHHhhhhhccc----------ccccceeeeeccHHHHHHHHHHcCCeEEE-eCCCcCHHHHHHHHcCCC
Confidence 5668999999999999999886 55554 56779999999999998864332 444544433 332236
Q ss_pred CcEEEEEcCCHH
Q 006034 478 PKAVMIMYTDKK 489 (663)
Q Consensus 478 a~~vv~~~~dd~ 489 (663)
+|.++-+++..+
T Consensus 97 ~D~vid~~G~~~ 108 (174)
T d1f8fa2 97 VNFALESTGSPE 108 (174)
T ss_dssp EEEEEECSCCHH
T ss_pred CcEEEEcCCcHH
Confidence 899988888754
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.57 E-value=0.25 Score=42.27 Aligned_cols=97 Identities=11% Similarity=0.128 Sum_probs=60.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----c-CCCEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----L-GFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~-~~~vi~GD~~~~~~L~~a~i 475 (663)
++.|+|.|++|..++-.|.. +..-.+++++|.|+++++- +++ . ...-+.+. .|.+ ..
T Consensus 2 KI~IIGaG~VG~~~a~~l~~--------~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~-~d~~-----~~ 67 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLL--------NLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG-ADYS-----LL 67 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------HSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE-SCGG-----GG
T ss_pred EEEEECcCHHHHHHHHHHHh--------cCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC-CCHH-----Hh
Confidence 47899999999999998862 1222469999999988532 221 1 22233332 2333 35
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
+++|.++++.+. | ..|.. ++...++.+|+ -++..+.||-+
T Consensus 68 ~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~-aivivvtNPvD 122 (142)
T d1ojua1 68 KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPE-SKILVVTNPMD 122 (142)
T ss_dssp TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTT-CEEEECSSSHH
T ss_pred ccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCC-cEEEEecCChH
Confidence 788888877652 2 45554 34445566777 56777777754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.51 E-value=0.072 Score=50.86 Aligned_cols=76 Identities=13% Similarity=0.017 Sum_probs=52.9
Q ss_pred CCCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHh
Q 006034 401 EGSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 401 ~~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~ 472 (663)
+.+++ ++|.|. +-+|+.+|+.|. ++|.+|++.|+|+++.++..+ .+ ...+..|.+|++-.++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 74 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFA----------GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREK 74 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHH
Confidence 34554 555565 559999999998 799999999999998766543 23 4567789998876543
Q ss_pred c------CC-CCCcEEEEEcC
Q 006034 473 A------GI-TSPKAVMIMYT 486 (663)
Q Consensus 473 a------~i-~~a~~vv~~~~ 486 (663)
+ .. .+-|.+|-..+
T Consensus 75 ~~~~~~~~~~g~idilvnnAG 95 (259)
T d1xq1a_ 75 LMQTVSSMFGGKLDILINNLG 95 (259)
T ss_dssp HHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHhCCCccccccccc
Confidence 1 11 35676666543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.46 E-value=0.041 Score=49.69 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=52.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.++ ..|.+|.+.|+++... ..... + +=++. +.++|.++
T Consensus 42 gk~vgIiG~G~IG~~va~~l~----------~~g~~v~~~d~~~~~~-------~~~~~-~-~l~el-----l~~sDiv~ 97 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILA----------ALGAQVRGFSRTPKEG-------PWRFT-N-SLEEA-----LREARAAV 97 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHH----------HTTCEEEEECSSCCCS-------SSCCB-S-CSHHH-----HTTCSEEE
T ss_pred CceEEEeccccccccceeeee----------cccccccccccccccc-------ceeee-e-chhhh-----hhccchhh
Confidence 457999999999999999997 7899999999886531 11111 1 11222 46888888
Q ss_pred EEcCCHH--HHHHHHHHHHHhCCC
Q 006034 483 IMYTDKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~--~n~~~~~~~r~~~~~ 504 (663)
+..+..+ .|+.-....+.+.++
T Consensus 98 ~~~pl~~~t~~li~~~~l~~mk~~ 121 (181)
T d1qp8a1 98 CALPLNKHTRGLVKYQHLALMAED 121 (181)
T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTT
T ss_pred cccccccccccccccceeeecccc
Confidence 8776543 344445566666655
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.44 E-value=0.17 Score=44.47 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=57.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCE-EEecCCC--HHHHHhcCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPI-LYGDASR--PAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~v-i~GD~~~--~~~L~~a~i~ 476 (663)
..++++|.|. |.+|...++.++ ..| .+|+++|.|+++.+.+++.|... +..+..| ++..+..+=+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~----------~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAK----------AVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESK 96 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHH----------HHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEEeccccceeeeeeccc----------ccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcc
Confidence 4568999995 999999999887 455 68999999999999999888654 3333332 2344444556
Q ss_pred CCcEEEEEcCCHH
Q 006034 477 SPKAVMIMYTDKK 489 (663)
Q Consensus 477 ~a~~vv~~~~dd~ 489 (663)
.+|.++-+++..+
T Consensus 97 ~~d~vid~~g~~~ 109 (170)
T d1jvba2 97 GVDAVIDLNNSEK 109 (170)
T ss_dssp CEEEEEESCCCHH
T ss_pred cchhhhcccccch
Confidence 6898888777643
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.36 E-value=0.057 Score=50.45 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
+..++|+|+|.|.-|...|..|. +.|++|+++|.+++.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~----------~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLM----------ESGYTVHLTDTAEKI 84 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSST
T ss_pred cCCceEEEEcccHHHHHHHHHHH----------HhccceeeEeecccc
Confidence 46689999999999999999998 799999999987754
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.31 E-value=0.071 Score=51.26 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC-----CCEEEecCCCHHHH
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG-----FPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~-----~~vi~GD~~~~~~L 470 (663)
.+++ ++|.|. +-+|+.+++.|. ++|.+|++.|+|+++.+++.+ .+ ...+.+|.+|++-.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la----------~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v 72 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFA----------QEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQ 72 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHH
Confidence 3444 455565 569999999998 899999999999998766543 22 45788999998866
Q ss_pred Hhc------CCCCCcEEEEE
Q 006034 471 LSA------GITSPKAVMIM 484 (663)
Q Consensus 471 ~~a------~i~~a~~vv~~ 484 (663)
+++ ...+-|.+|-.
T Consensus 73 ~~~~~~~~~~~g~iDilvnn 92 (272)
T d1xkqa_ 73 DQIINSTLKQFGKIDVLVNN 92 (272)
T ss_dssp HHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHhCCceEEEeC
Confidence 542 22356766643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.30 E-value=0.069 Score=51.41 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=50.9
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC-----CCEEEecCCCHHHHHhc-
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG-----FPILYGDASRPAVLLSA- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~-----~~vi~GD~~~~~~L~~a- 473 (663)
.++|.|. +-+|+.+|+.|. ++|.+|++.|+|+++.+...+ .+ ...+.+|.+|++-.+++
T Consensus 6 ~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (274)
T d1xhla_ 6 SVIITGSSNGIGRSAAVIFA----------KEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDII 75 (274)
T ss_dssp EEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHH
Confidence 4555565 559999999998 899999999999988766543 22 35788999998866542
Q ss_pred -----CCCCCcEEEEE
Q 006034 474 -----GITSPKAVMIM 484 (663)
Q Consensus 474 -----~i~~a~~vv~~ 484 (663)
...+-|.+|..
T Consensus 76 ~~~~~~~G~iDilVnn 91 (274)
T d1xhla_ 76 NTTLAKFGKIDILVNN 91 (274)
T ss_dssp HHHHHHHSCCCEEEEC
T ss_pred HHHHHHcCCceEEEee
Confidence 22356766653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.28 E-value=0.083 Score=43.82 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
.++++|+|.|.+|-.+|..|. ..|.+|.++++.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~----------~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIK----------RLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHH----------hccccceeeehhc
Confidence 578999999999999999998 8999999999743
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.27 E-value=0.069 Score=51.06 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=46.7
Q ss_pred CCCcEEEE-c-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c-----CCCEEEecCCCHHHH
Q 006034 402 GSEPVVIV-G-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-----GFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~viI~-G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~-----~~~vi~GD~~~~~~L 470 (663)
.+++++++ | .+-+|+.+++.|. ++|.+|++.|+|+++.+++.+ . ....+.+|.+|++-.
T Consensus 3 l~gKvalVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v 72 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFA----------REGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQ 72 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHH
Confidence 45555555 5 4789999999998 899999999999988766543 2 245778999988866
Q ss_pred Hh
Q 006034 471 LS 472 (663)
Q Consensus 471 ~~ 472 (663)
++
T Consensus 73 ~~ 74 (264)
T d1spxa_ 73 DE 74 (264)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.22 E-value=0.3 Score=42.20 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=61.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h----cCCC-EEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K----LGFP-ILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~----~~~~-vi~GD~~~~~~L~~a 473 (663)
+.++.|+|.|++|..++..|.. +.=.+++++|.++++.+-.. + .+.+ .+.++ .+.+
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~---------~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~-~~~~----- 67 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQ---------KNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTYD----- 67 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------TTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCGG-----
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------CCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEec-cccc-----
Confidence 4579999999999999987752 22237999999997743322 1 1222 23332 2332
Q ss_pred CCCCCcEEEEEcCC--------------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 474 GITSPKAVMIMYTD--------------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 474 ~i~~a~~vv~~~~d--------------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
...++|.++++.+. | ..|.. ++..+++.+|+ -++..+.||-+
T Consensus 68 ~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~-aivivvtNPvD 129 (150)
T d1t2da1 68 DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN-AFIIVVTNPVD 129 (150)
T ss_dssp GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSSHH
T ss_pred ccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCC-eEEEEecCchH
Confidence 34688988887762 1 23444 33456777888 46666777754
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=92.15 E-value=0.25 Score=42.26 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=58.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-h-------cCCC-EEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-K-------LGFP-ILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-~-------~~~~-vi~GD~~~~~~L~~a 473 (663)
+++|.|+|.|++|..+|-.|.. +.-.+++.+|.++++.+... + .+.. -+.+. .|.+
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~---------~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~-~d~~----- 65 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAA---------KELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT-NNYA----- 65 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------HTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-SCGG-----
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------CCcceEEEEeeccccchhHHHHhhccccccCCCCEEEec-CcHH-----
Confidence 3579999999999999988862 22247999999988743322 1 1111 12221 2222
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
..+++|.++++.+. | +.|.. ++..+++.+|+. ++.-+.||-+
T Consensus 66 ~~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~a-ivivvtNPvD 122 (142)
T d1uxja1 66 DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNA-VIIMVNNPLD 122 (142)
T ss_dssp GGTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTC-EEEECSSSHH
T ss_pred HhcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCc-eEEEeCCchH
Confidence 24678888877742 1 34543 344455567774 5555666644
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.13 E-value=0.25 Score=43.46 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCC-EEEecCCC-HHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFP-ILYGDASR-PAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~-vi~GD~~~-~~~L~~a~i~~a 478 (663)
..+.++|.|.|.+|...++.++ ..| .+++++|.++++.+.+++.+.. ++..+..+ ++.++..+-+.+
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~----------~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLK----------VMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEeCCChHHHHHHHHHH----------hhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCc
Confidence 3467999999999999999886 444 5788899999999999987754 44433222 224555566679
Q ss_pred cEEEEEcCCHH
Q 006034 479 KAVMIMYTDKK 489 (663)
Q Consensus 479 ~~vv~~~~dd~ 489 (663)
|.++-++++..
T Consensus 102 d~vid~~g~~~ 112 (172)
T d1h2ba2 102 NVAMDFVGSQA 112 (172)
T ss_dssp EEEEESSCCHH
T ss_pred eEEEEecCcch
Confidence 98888888754
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.03 Score=47.18 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCcc-----------hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHH
Q 006034 401 EGSEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~~-----------g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~ 469 (663)
...++++|+|.|+. +.+.++.|+ +.|+++++|+.||+.+..-.+....++.--.+-+.+
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alk----------e~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v 74 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALR----------EEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVV 74 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHH----------HHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHH
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHH----------HcCCeEEEecCchHhhhcChhhcceeeeecCCHHHH
Confidence 35678999999764 567788887 899999999999999875555445555555555556
Q ss_pred HHhcCCCCCcEEEEEcCCH
Q 006034 470 LLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd 488 (663)
.+-...++.|.++...+.-
T Consensus 75 ~~Ii~~E~pd~il~~~GGQ 93 (127)
T d1a9xa3 75 RKIIEKERPDAVLPTMGGQ 93 (127)
T ss_dssp HHHHHHHCCSEEECSSSHH
T ss_pred HHHHHHhCcCCeEEEeeee
Confidence 6666778999998888864
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.05 E-value=0.13 Score=45.61 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE-ecCCC---HHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-GDASR---PAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~-GD~~~---~~~L~~a~i~~ 477 (663)
..++|+|.|.|..|...+..+.. ..+.+|+++|.++++.+.+++.|...+. -+-.+ .+..+..+-..
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~---------~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHS---------AGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------TTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEEecCCccchHHHHHHH---------HhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCC
Confidence 45679999999999999998872 4556799999999999999998854443 22111 34555555567
Q ss_pred CcEEEEEcCCHHHH
Q 006034 478 PKAVMIMYTDKKRT 491 (663)
Q Consensus 478 a~~vv~~~~dd~~n 491 (663)
+|.++-+++.....
T Consensus 99 ~d~vid~~G~~~~~ 112 (175)
T d1cdoa2 99 VDFSLECVGNVGVM 112 (175)
T ss_dssp BSEEEECSCCHHHH
T ss_pred cceeeeecCCHHHH
Confidence 89999898886543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=92.05 E-value=0.087 Score=50.09 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=51.5
Q ss_pred EEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc-----
Q 006034 406 VVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 406 viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a----- 473 (663)
++|.|.+ -+|+.+++.|. ++|++|++.|+|+++.++..+ .+ ...+.+|.+|++-.+++
T Consensus 5 alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (257)
T d2rhca1 5 ALVTGATSGIGLEIARRLG----------KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV 74 (257)
T ss_dssp EEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 4666765 49999999998 899999999999988766543 33 45678999999876542
Q ss_pred -CCCCCcEEEEE
Q 006034 474 -GITSPKAVMIM 484 (663)
Q Consensus 474 -~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 75 ~~~g~iDilVnn 86 (257)
T d2rhca1 75 ERYGPVDVLVNN 86 (257)
T ss_dssp HHTCSCSEEEEC
T ss_pred HHhCCCCEEEec
Confidence 33467766644
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=92.00 E-value=0.069 Score=52.21 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=50.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-----ChHHHHHHHh-cCCCEEEecCCCHHHHHhcCC-C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-----NPSVVKESRK-LGFPILYGDASRPAVLLSAGI-T 476 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-----d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i-~ 476 (663)
+|+|.|. |-+|+.+++.|. ++|++|+++|. ..++.+.+.+ .+..++.||.+|.+.+.++-- .
T Consensus 2 KILVTGatGfIGs~lv~~Ll----------~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~ 71 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFAL----------SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY 71 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhc
Confidence 5788875 889999999997 78999999984 1222333333 568899999999998877521 1
Q ss_pred CCcEEEEE
Q 006034 477 SPKAVMIM 484 (663)
Q Consensus 477 ~a~~vv~~ 484 (663)
+.|+|+-+
T Consensus 72 ~~d~Vih~ 79 (338)
T d1orra_ 72 MPDSCFHL 79 (338)
T ss_dssp CCSEEEEC
T ss_pred CCceEEee
Confidence 46777644
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=91.99 E-value=0.18 Score=44.55 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=48.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++|+|+|.|-.++.++..|. +.|. ++.++.+++++.+.+.+. +...+ + .....++|.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~----------~~g~~~I~I~nR~~~ka~~L~~~~~~~~~--~--------~~~~~~~Dl 76 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFK----------NSGFEKLKIYARNVKTGQYLAALYGYAYI--N--------SLENQQADI 76 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHH----------HTTCCCEEEECSCHHHHHHHHHHHTCEEE--S--------CCTTCCCSE
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCCCCEEEEecccHHHHHHHHHhhhhhhh--h--------cccccchhh
Confidence 468999999999999999997 6675 799999999999988762 33222 1 122357898
Q ss_pred EEEEcC
Q 006034 481 VMIMYT 486 (663)
Q Consensus 481 vv~~~~ 486 (663)
+|-+|+
T Consensus 77 iINaTp 82 (167)
T d1npya1 77 LVNVTS 82 (167)
T ss_dssp EEECSS
T ss_pred heeccc
Confidence 877765
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.99 E-value=0.06 Score=51.40 Aligned_cols=71 Identities=10% Similarity=0.193 Sum_probs=51.2
Q ss_pred CcEEEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cC--CCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LG--FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~--~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.++ +|+.+++.|. ++|++|++.|+|+++.++..+ .+ ...+.+|.+|++-.+++
T Consensus 10 K~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 79 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVA----------AAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ 79 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHH----------HTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 3456667655 9999999998 899999999999887544322 23 45688999999866442
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 80 ~~~~~~g~iDilVnn 94 (260)
T d1h5qa_ 80 QIDADLGPISGLIAN 94 (260)
T ss_dssp HHHHHSCSEEEEEEC
T ss_pred HHHHHhCCCcEeccc
Confidence 33467766654
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=91.93 E-value=0.15 Score=45.37 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=52.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCC------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPS-VVKESRKLGFPILYGDASRPAVLLSAGIT------ 476 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~------ 476 (663)
+|-|-||||+|+.+.|.+. ++.+.+++.| |.++. ....+...++.+..++.......++.++.
T Consensus 3 ~VgINGfGRIGR~v~R~l~---------~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~ 73 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIA---------QQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVD 73 (171)
T ss_dssp EEEEECCSHHHHHHHHHHH---------TSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHH
T ss_pred EEEEEcCcHHHHHHHHHHH---------hCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChh
Confidence 5889999999999999987 2566777766 44443 34555667788877776666666666654
Q ss_pred ----CCcEEEEEcCC
Q 006034 477 ----SPKAVMIMYTD 487 (663)
Q Consensus 477 ----~a~~vv~~~~d 487 (663)
++|.|+=+|+.
T Consensus 74 ~~~~~vDvViEcTG~ 88 (171)
T d1cf2o1 74 DMLDEADIVIDCTPE 88 (171)
T ss_dssp HHHHTCSEEEECCST
T ss_pred HhhcCCCEEEEccCC
Confidence 46666666665
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=91.85 E-value=0.46 Score=40.31 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=67.9
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEec
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
.|.+||.|+...+.++ +.|+.+... .+-.+.++...-...|.++.-..=. ..=+..+..+|+.+|++++|....
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~~~~~dlil~D~~mP~~~G~el~~~lr~~~~~~pvI~lT~ 80 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLELAGFTVSSF-ASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 80 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEe-CChHHHHHHHhccCcchHHHhhccCCCCHHHHHHHHHHhCCCCcEEEEEC
Confidence 4789999998765554 478887764 3446788888888899777655432 334667888999999999777664
Q ss_pred --ChhhHHHHHHcCCCeEEcCc
Q 006034 513 --DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 513 --~~~~~~~l~~~Gad~vi~p~ 532 (663)
+.+......++||+..+.-.
T Consensus 81 ~~~~~~~~~a~~~Ga~dyl~KP 102 (140)
T d1qkka_ 81 HGDIPMAVQAIQDGAYDFIAKP 102 (140)
T ss_dssp GGGHHHHHHHHHTTCCEEEESS
T ss_pred CCCHHHHHHHHHcCCCEeecCC
Confidence 45666677889999877554
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=91.85 E-value=0.71 Score=37.89 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 437 WPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
++|.+||.|+...+.+++ .|. +... .+-.+.|++ .++.|.++.-..= +..-...+...|+.+|+++++...
T Consensus 3 ~kILiVDDd~~~~~~l~~~L~~~g~-v~~~-~~~~~al~~--~~~~dlillD~~mP~~~G~~~~~~lr~~~~~~~ii~it 78 (120)
T d1p2fa2 3 WKIAVVDDDKNILKKVSEKLQQLGR-VKTF-LTGEDFLND--EEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLT 78 (120)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTEE-EEEE-SSHHHHHHC--CSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhCCE-EEEE-CCHHHHHhc--CCCCCEEEEeCcccccchhHHHHHHhhcCCCCcEEEEe
Confidence 468899999988666553 443 3222 233455653 4578877766542 234477888999999998877655
Q ss_pred --cChhhHHHHHHcCCCeEEcCch
Q 006034 512 --QDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 512 --~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
++.+......++||+..+.-..
T Consensus 79 ~~~~~~~~~~a~~~Ga~dyl~KP~ 102 (120)
T d1p2fa2 79 LLSDDESVLKGFEAGADDYVTKPF 102 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSC
T ss_pred cCCCHHHHHHHHHCCCCEEEECCC
Confidence 4566777778899998776553
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.85 E-value=0.036 Score=52.30 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
..++|+|+|.|.-|...|..|. ++|++|+++|++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~----------~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLR----------DAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHH----------HCCCCEEEEeCCCC
Confidence 4678999999999999999998 78999999998765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.1 Score=50.92 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=52.2
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---------c--CCCEEEecCCCHH
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------L--GFPILYGDASRPA 468 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---------~--~~~vi~GD~~~~~ 468 (663)
.+++ ++|.|. +-+|+.+++.|. ++|.+|++.|+|+++.+...+ . ....+.+|.+|++
T Consensus 10 L~gKvalITGas~GIG~aia~~la----------~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~ 79 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELL----------ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE 79 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHH
Confidence 4544 566665 559999999998 799999999999988665442 1 2446789999998
Q ss_pred HHHhc------CCCCCcEEEEE
Q 006034 469 VLLSA------GITSPKAVMIM 484 (663)
Q Consensus 469 ~L~~a------~i~~a~~vv~~ 484 (663)
-.+++ ...+-|.+|-.
T Consensus 80 ~v~~~~~~~~~~~G~iDiLVnn 101 (297)
T d1yxma1 80 EVNNLVKSTLDTFGKINFLVNN 101 (297)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHhCCeEEEEee
Confidence 76542 22366766644
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=91.69 E-value=0.043 Score=51.30 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
.+++|+|||.|-.|...|..|. ++|++|+++|+++
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~----------~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILA----------RKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHH----------HCCCCEEEEeCCC
Confidence 4568999999999999999998 7899999999864
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.62 E-value=0.1 Score=49.68 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=50.0
Q ss_pred cEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cC--CCEEEecCCCHHHHHhc--
Q 006034 405 PVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LG--FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 405 ~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~--~~vi~GD~~~~~~L~~a-- 473 (663)
.++|.|.+ -+|+.+++.|. ++|.+|++.|+|+++.+...+ .+ ...+.+|.+|++-.+++
T Consensus 6 ~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~ 75 (258)
T d1iy8a_ 6 VVLITGGGSGLGRATAVRLA----------AEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVT 75 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHH
Confidence 46666765 59999999998 899999999999988665432 12 34578999998876542
Q ss_pred ----CCCCCcEEEE
Q 006034 474 ----GITSPKAVMI 483 (663)
Q Consensus 474 ----~i~~a~~vv~ 483 (663)
...+-|.+|-
T Consensus 76 ~~~~~~G~iDiLVn 89 (258)
T d1iy8a_ 76 ATTERFGRIDGFFN 89 (258)
T ss_dssp HHHHHHSCCSEEEE
T ss_pred HHHHHhCCCCEEEE
Confidence 2235666654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.60 E-value=0.064 Score=44.90 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=32.1
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
+..+|++|+|.|.+|..+|+.|. +.|.+|.++++++
T Consensus 18 ~~P~~vvIIGgG~iG~E~A~~l~----------~lG~~Vtii~~~~ 53 (122)
T d1h6va2 18 YCPGKTLVVGASYVALECAGFLA----------GIGLDVTVMVRSI 53 (122)
T ss_dssp SCCCSEEEECCSHHHHHHHHHHH----------HTTCCEEEEESSS
T ss_pred cCCCeEEEECCCccHHHHHHHHh----------hcCCeEEEEEech
Confidence 35579999999999999999998 7999999998763
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.53 E-value=0.34 Score=41.06 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=64.9
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEE-EeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+| .||+|+.+++.+.+ +++.+++. +|... +.+.+. -.++|++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~---------~~~~~l~~~~d~~~-------------------~~~~~~---~~~~Dvv- 48 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAA---------ADDLTLSAELDAGD-------------------PLSLLT---DGNTEVV- 48 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------STTSEEEEEECTTC-------------------CTHHHH---TTTCSEE-
T ss_pred CEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCC-------------------chhhhc---cccCCEE-
Confidence 589999 69999999998863 56666543 34321 111222 1467855
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEE-Eec-ChhhHHHHHHc-----CCCeEEcCchHHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQ-DMMHLLDLKKA-----GATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia-~~~-~~~~~~~l~~~-----Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+-.+..+.....+..+.+.+. +++. ..- ++++.+.+++. ++--++.|+.-.|..+...+++
T Consensus 49 IDFS~p~~~~~~~~~~~~~~~--~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~ 116 (135)
T d1yl7a1 49 IDFTHPDVVMGNLEFLIDNGI--HAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVR 116 (135)
T ss_dssp EECCCTTTHHHHHHHHHHTTC--EEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHH
T ss_pred EEcccHHHHHHHHHHHHhcCC--CEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHHHH
Confidence 555555555555666777753 4444 332 45666777652 4557889998777666655544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=91.50 E-value=0.084 Score=46.85 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=50.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
++.|+|+|++|+..++.+.+ ..+.+++ +.|++++..+ ...+...+ +.+.+ .++.|.|++
T Consensus 5 rvgiiG~G~ig~~~~~~l~~---------~~~~elvav~~~~~~~~~-----~~~~~~~~--~~~~~----~~~~D~Vvi 64 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAK---------QPDMDLVGIFSRRATLDT-----KTPVFDVA--DVDKH----ADDVDVLFL 64 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTT---------CSSEEEEEEEESSSCCSS-----SSCEEEGG--GGGGT----TTTCSEEEE
T ss_pred eEEEECChHHHHHHHHHHHh---------CCCcEEEEEEeccccccc-----ccccccch--hhhhh----ccccceEEE
Confidence 69999999999999999972 5567665 5577765422 23333322 22222 357899999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEE
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~ii 508 (663)
+|+++.. ...+..+-+.+ .+++
T Consensus 65 ~tp~~~h-~~~a~~aL~aG--~~vv 86 (170)
T d1f06a1 65 CMGSATD-IPEQAPKFAQF--ACTV 86 (170)
T ss_dssp CSCTTTH-HHHHHHHHTTT--SEEE
T ss_pred eCCCccc-HHHHHHHHHCC--CcEE
Confidence 9988643 33444443443 3454
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.44 E-value=0.31 Score=40.32 Aligned_cols=97 Identities=10% Similarity=-0.053 Sum_probs=66.3
Q ss_pred CCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEE
Q 006034 436 GWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 436 ~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+.+|.+||.|+...+.++ +.|+.+...+- -.+.++...-++.|.++.-..= +..-...+..+|+..+..+++..
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~~g~~v~~a~~-~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~~~~~piI~l 79 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKKEMFTVDVCYD-GEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML 79 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESS-HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcc-hHHHHHHHHhhCccccccccccccchhHHHHHHHHhcCCCCcEEEE
Confidence 367899999998765544 47888775422 2445555555788988776553 34456677888988888888776
Q ss_pred ecCh--hhHHHHHHcCCCeEEcCch
Q 006034 511 AQDM--MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 511 ~~~~--~~~~~l~~~Gad~vi~p~~ 533 (663)
.... +......++|+|..+.-..
T Consensus 80 t~~~~~~~~~~~~~~Ga~~yl~KP~ 104 (122)
T d1kgsa2 80 TALSDVEYRVKGLNMGADDYLPKPF 104 (122)
T ss_dssp ESSCHHHHHHHTCCCCCSEEEESSC
T ss_pred cCCCCHHHHHHHHHcCCceeecCCC
Confidence 6544 4455667799998776553
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=91.40 E-value=0.98 Score=37.13 Aligned_cols=96 Identities=21% Similarity=0.126 Sum_probs=68.2
Q ss_pred CCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEE
Q 006034 436 GWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 436 ~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+++|.+||.|+...+.++ +.|+.+... .+-++.++.+.-.+.|.+++-..= +..=...+..+|+.+|+.+++..
T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a-~~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~~~~~~iI~l 81 (123)
T d1dbwa_ 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMH-QSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI 81 (123)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhcCCCCeEEEE
Confidence 478999999998755544 478877553 344566776666778877766542 23456678889999999887776
Q ss_pred ec--ChhhHHHHHHcCCCeEEcCc
Q 006034 511 AQ--DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 511 ~~--~~~~~~~l~~~Gad~vi~p~ 532 (663)
.. +.+......++||+..+.-.
T Consensus 82 t~~~~~~~~~~a~~~Ga~~yl~KP 105 (123)
T d1dbwa_ 82 TGHGDVPMAVEAMKAGAVDFIEKP 105 (123)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESS
T ss_pred EeeCCHHHHHHHHHCCCCEEEECC
Confidence 64 55677777899999877654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=91.35 E-value=0.043 Score=54.43 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=54.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HH-hcCCCEEEecCCCHHHHHhcCC-
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SR-KLGFPILYGDASRPAVLLSAGI- 475 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~-~~~~~vi~GD~~~~~~L~~a~i- 475 (663)
.++|+|.|. |-+|+.+++.|. +.|++|.++|+++..... .+ ..+...+.||.+|++.+.++--
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~ 77 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQ----------TMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIRE 77 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhh
Confidence 468999985 789999999998 789999999997764322 21 2478999999999998876533
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.+.++-+.
T Consensus 78 ~~~~~v~~~a 87 (356)
T d1rkxa_ 78 FQPEIVFHMA 87 (356)
T ss_dssp HCCSEEEECC
T ss_pred chhhhhhhhh
Confidence 2445555444
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.11 Score=49.42 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=52.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. +-+|+.+++.|. ++|.+|++.|+|+++.++..+ .....+.+|.+|++-.+++
T Consensus 4 KvalITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALL----------LKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTF 73 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHH
Confidence 35666677 459999999998 899999999999988665542 1245678999998876542
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+-|.+|-..
T Consensus 74 ~~~~~~~G~iDilVnnA 90 (254)
T d2gdza1 74 RKVVDHFGRLDILVNNA 90 (254)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHcCCcCeecccc
Confidence 223667665543
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=91.30 E-value=0.024 Score=56.17 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=53.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+|+|.|. |-+|+.+++.|. ++| ++|.++|...+..+...+ .+..++.||.++.+-+.+.-.+++|.|
T Consensus 2 KILITG~tGfiG~~l~~~Ll----------~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~V 71 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLL----------REDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVV 71 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHH----------HSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEE
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcc
Confidence 4888886 889999999996 455 689999987766555443 568899999987755444335678988
Q ss_pred EEEcC
Q 006034 482 MIMYT 486 (663)
Q Consensus 482 v~~~~ 486 (663)
+-+..
T Consensus 72 ih~a~ 76 (342)
T d2blla1 72 LPLVA 76 (342)
T ss_dssp EECBC
T ss_pred ccccc
Confidence 77554
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.10 E-value=0.098 Score=52.70 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=50.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC--------------------hHHHHH---HHhcCCCE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN--------------------PSVVKE---SRKLGFPI 459 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d--------------------~~~~~~---~~~~~~~v 459 (663)
.+|+|.|. |-+|+.++++|. +.|++|+++|.- +++... ....++.+
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll----------~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 71 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLS----------KKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIEL 71 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEE
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEE
Confidence 36889886 889999999998 789999999832 122222 22357899
Q ss_pred EEecCCCHHHHHhc--CCCCCcEEE
Q 006034 460 LYGDASRPAVLLSA--GITSPKAVM 482 (663)
Q Consensus 460 i~GD~~~~~~L~~a--~i~~a~~vv 482 (663)
++||.+|.+.++++ +. +.|.|+
T Consensus 72 ~~~Dl~d~~~l~~~~~~~-~~d~Vi 95 (393)
T d1i24a_ 72 YVGDICDFEFLAESFKSF-EPDSVV 95 (393)
T ss_dssp EESCTTSHHHHHHHHHHH-CCSEEE
T ss_pred EEccCCCHHHHHHHHHhh-cchhee
Confidence 99999999998875 22 467665
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=90.99 E-value=0.31 Score=45.00 Aligned_cols=113 Identities=18% Similarity=0.061 Sum_probs=70.2
Q ss_pred CCcEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCE--EEecCCCH-HHHHhcCCC
Q 006034 403 SEPVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPI--LYGDASRP-AVLLSAGIT 476 (663)
Q Consensus 403 ~~~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~v--i~GD~~~~-~~L~~a~i~ 476 (663)
+=+|.|+|+|.+|+ ...+.+. +..+.+++ ++|.|+++.+...+ .+.+. ++ ..+|- +.++ -.
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~---------~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~-~~~d~~ell~---~~ 99 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFA---------GCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY-DYSNFDKIAK---DP 99 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTT---------TCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEE-CSSSGGGGGG---CT
T ss_pred CEEEEEEcCcHHHHHHHHHHHH---------hCCCceEEEEecCCHHHHHHHHHhhcccccccc-ccCchhhhcc---cc
Confidence 34799999999997 4677776 24577777 77999999888765 33321 11 12333 3343 35
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCeEEcC
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 531 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~vi~p 531 (663)
+.|+|+++|.++.. ...+..+-+.+ .++++. +.+.++.+.+ ++.|....+.-
T Consensus 100 ~iD~V~I~tp~~~H-~~~~~~al~~g--k~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~ 158 (221)
T d1h6da1 100 KIDAVYIILPNSLH-AEFAIRAFKAG--KHVMCEKPMATSVADCQRMIDAAKAANKKLMIGY 158 (221)
T ss_dssp TCCEEEECSCGGGH-HHHHHHHHHTT--CEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred cceeeeeccchhhh-hhHHHHhhhcc--hhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEee
Confidence 78999999988644 44455555554 367774 4555555443 44466554443
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.97 E-value=0.06 Score=45.44 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+.+++|+|+|+.|+.+++.+.. +.+++ +-.+|.|++...+.- .|.+|+.- +-+++.-.++.+.+
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~---------~~~~~iv~fiDdd~~k~G~~I-~Gi~V~~~-----~~l~~~~~~~i~ia 67 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGF---------GESFELRGFFDVDPEKVGRPV-RGGVIEHV-----DLLPQRVPGRIEIA 67 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCC---------CSSEEEEEEEESCTTTTTCEE-TTEEEEEG-----GGHHHHSTTTCCEE
T ss_pred CceEEEEcCCHHHHHHHHhHhh---------cCCcEEEEEEeCchHhcCCEE-CCEEEecH-----HHHHHHHhhcccEE
Confidence 3479999999999999998862 45555 556799998644222 36777632 23444445667766
Q ss_pred EEEcCCHHHHHHHHHHHHHhC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~ 502 (663)
+.+++.... -.++..+.+.+
T Consensus 68 i~~i~~~~~-~~I~d~l~~~g 87 (126)
T d2dt5a2 68 LLTVPREAA-QKAADLLVAAG 87 (126)
T ss_dssp EECSCHHHH-HHHHHHHHHHT
T ss_pred EEeCCHHHH-HHHHHHHHHcC
Confidence 666665433 34455555544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.92 E-value=0.16 Score=46.06 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH----HHHhcCCC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA----VLLSAGIT 476 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~----~L~~a~i~ 476 (663)
+..+.|+|+|.|.+|...++..+. ....+|+++|.++++.+.+++.|...+. |..+++ +.+..+=.
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~---------~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARL---------LGAAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---------TTCSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSSS
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh---------hcccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHHHhCCC
Confidence 355689999999999998888761 3344899999999999999998877665 444433 33333455
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
.+|.++=+.+
T Consensus 94 g~D~vid~vG 103 (195)
T d1kola2 94 EVDCAVDAVG 103 (195)
T ss_dssp CEEEEEECCC
T ss_pred CcEEEEECcc
Confidence 6888877665
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.91 E-value=0.18 Score=44.49 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEEEecC-C-C--HHHHHhcCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDA-S-R--PAVLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi~GD~-~-~--~~~L~~a~i~ 476 (663)
..+.|+|.|.|.+|...++.++ ..| ..|+++|.++++.+.+++.|...+.-.. . + .+.+++.+-.
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak----------~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCK----------VAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEecchhHHHHHHHHHH----------HHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCC
Confidence 4567999999999999999887 566 5688889999999999998865543221 1 1 2355565666
Q ss_pred CCcEEEEEcCCHHH
Q 006034 477 SPKAVMIMYTDKKR 490 (663)
Q Consensus 477 ~a~~vv~~~~dd~~ 490 (663)
.+|.++-+++++..
T Consensus 98 g~D~vid~~G~~~~ 111 (176)
T d2fzwa2 98 GVDYSFECIGNVKV 111 (176)
T ss_dssp CBSEEEECSCCHHH
T ss_pred CCcEeeecCCCHHH
Confidence 89999988887643
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=0.12 Score=51.07 Aligned_cols=70 Identities=19% Similarity=0.088 Sum_probs=51.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh----H---HHHHHHhcCCCEEEecCCCHHHHHhcC-C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----S---VVKESRKLGFPILYGDASRPAVLLSAG-I 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~----~---~~~~~~~~~~~vi~GD~~~~~~L~~a~-i 475 (663)
-|+|.|. |-+|+.+++.|. ++|++|+++|.-. + ..+.....+..++++|.+|.+-++++- -
T Consensus 3 ~ILVTGatGfIG~~lv~~Ll----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 72 (347)
T d1z45a2 3 IVLVTGGAGYIGSHTVVELI----------ENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKE 72 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHH----------HCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhc
Confidence 4667765 899999999998 7899999998521 1 233344578999999999999887652 2
Q ss_pred CCCcEEEEE
Q 006034 476 TSPKAVMIM 484 (663)
Q Consensus 476 ~~a~~vv~~ 484 (663)
.+.|+|+=+
T Consensus 73 ~~~d~Vihl 81 (347)
T d1z45a2 73 YKIDSVIHF 81 (347)
T ss_dssp SCCCEEEEC
T ss_pred cCCCEEEEc
Confidence 367877643
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.88 E-value=0.41 Score=40.74 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=60.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h----cCCCEEEecCCCHHHHHhcCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
++.|+|.|++|..++..|.. +....+++++|.|+++++-.. + .....+.. .|.+. .+
T Consensus 2 KI~IIGaG~VG~~~a~~l~~--------~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~~~~-----~~ 66 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLM--------KGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GDYAD-----LK 66 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CCGGG-----GT
T ss_pred EEEEECcCHHHHHHHHHHHh--------CCCCCEEEEEecccccccchhccccccccccccccccC--CcHHH-----hc
Confidence 47899999999999987752 133457999999998754322 1 12223332 23332 46
Q ss_pred CCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH
Q 006034 477 SPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 477 ~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
+||.++++.+- | ..|.. ++...++.+|+. ++..+.||-+.
T Consensus 67 ~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~a-ivivvtNPvd~ 121 (140)
T d1a5za1 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDS-IVIVVTNPVDV 121 (140)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTC-EEEECSSSHHH
T ss_pred CCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCc-EEEEeCCcHHH
Confidence 88988877532 2 23443 345567778884 55556776543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.83 E-value=0.056 Score=45.32 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
+..++++|+|.|-+|..+|+.+. +.|.+|.++++++..
T Consensus 23 ~~p~~~viiG~G~iglE~A~~~~----------~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 23 EIPKKLVVIGAGYIGLEMGSVWG----------RIGSEVTVVEFASEI 60 (123)
T ss_dssp SCCSEEEESCCSHHHHHHHHHHH----------HHTCEEEEECSSSSS
T ss_pred ccCCeEEEEccchHHHHHHHHHH----------hcCCeEEEEEEcccc
Confidence 45679999999999999999997 899999999886643
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.65 E-value=0.18 Score=47.54 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=50.4
Q ss_pred CCC-cEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH---h--cCCCEEEecCCCHHHHHh
Q 006034 402 GSE-PVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K--LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~-~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~---~--~~~~vi~GD~~~~~~L~~ 472 (663)
.++ .++|.|.+ -+|+.+++.|. ++|.+|++.+++++..+... + .....+..|.+|++-.++
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la----------~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 75 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLK----------EAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDA 75 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHH----------HCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHH
Confidence 444 46777864 49999999998 78999999999877644333 2 246678899999876654
Q ss_pred c------CCCCCcEEE
Q 006034 473 A------GITSPKAVM 482 (663)
Q Consensus 473 a------~i~~a~~vv 482 (663)
+ ...+-|.+|
T Consensus 76 ~~~~~~~~~g~iDilV 91 (256)
T d1ulua_ 76 LFAGVKEAFGGLDYLV 91 (256)
T ss_dssp HHHHHHHHHSSEEEEE
T ss_pred HHHHHHHhcCCceEEE
Confidence 3 223567665
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=90.63 E-value=0.097 Score=43.49 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
+..++++|+|.|.+|-.+|..|. +.|.+|++++.++.
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~----------~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWA----------RLGAEVTVLEAMDK 56 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSS
T ss_pred cCCCeEEEECCChHHHHHHHHHH----------HcCCceEEEEeecc
Confidence 45688999999999999999998 79999999987653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.52 E-value=0.065 Score=48.04 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSV 448 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~ 448 (663)
..++|+|+|.|+.|...|..|. +.|+ +|+++|+++..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~----------~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLA----------RLGYSDITIFEKQEYV 40 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHH----------HTTCCCEEEEESSSSC
T ss_pred CCCEEEEECChHHHHHHHHHHH----------HCCCCeEEEEEecCcc
Confidence 4678999999999999999998 7887 69999987754
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.11 Score=48.94 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=55.0
Q ss_pred CCCcEEEE--cCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc--CCC
Q 006034 402 GSEPVVIV--GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA--GIT 476 (663)
Q Consensus 402 ~~~~viI~--G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a--~i~ 476 (663)
.+++++++ |.+.+|+.+++.|. ++|++|+++|+|+++.+++.+ .+......|.++++..++. ...
T Consensus 4 l~gK~alITGas~GIG~aia~~la----------~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 73 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFA----------REGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVE 73 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccc
Confidence 45566555 56889999999998 789999999999999887766 4566777888877766542 334
Q ss_pred CCcEEEEE
Q 006034 477 SPKAVMIM 484 (663)
Q Consensus 477 ~a~~vv~~ 484 (663)
+-|.+|-.
T Consensus 74 ~id~lVn~ 81 (245)
T d2ag5a1 74 RLDVLFNV 81 (245)
T ss_dssp CCSEEEEC
T ss_pred cceeEEec
Confidence 66766554
|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Positive regulator of the amidase operon AmiR domain: Positive regulator of the amidase operon AmiR species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.45 E-value=0.49 Score=42.04 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=67.7
Q ss_pred CCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 435 VGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 435 ~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
++.++.|+|.|++..+.+. ..|++|....... +.|. ...|.|+.-..-+..+.......++.+|++++|..
T Consensus 10 ~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~-~al~----~~~Dlvl~D~~mp~~~~~~~~~~~~~~p~~pvI~l 84 (189)
T d1qo0d_ 10 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP-EAFD----VPVDVVFTSIFQNRHHDEIAALLAAGTPRTTLVAL 84 (189)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC-SSCS----SCCSEEEEECCSSTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHcCCcceecCCHH-Hhcc----CCCCEEEEcCCCCCcHHHHHHHHHHcCCCCCEEEE
Confidence 3579999999999866554 4788887765433 3443 47898888776555667777778888899997776
Q ss_pred ec--ChhhHHHHHHcCCCeEEcC
Q 006034 511 AQ--DMMHLLDLKKAGATDAILE 531 (663)
Q Consensus 511 ~~--~~~~~~~l~~~Gad~vi~p 531 (663)
.. +.++.....++|++..+.-
T Consensus 85 ta~~~~~~~~~al~~Ga~~yL~K 107 (189)
T d1qo0d_ 85 VEYESPAVLSQIIELECHGVITQ 107 (189)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEES
T ss_pred eccchHHHHHHHHHcCCcEEEEe
Confidence 54 5678888899999986654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.41 E-value=0.058 Score=51.82 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=43.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
+.+|+|+|+|..|..+|..|. +.|++|+|+|++++... ..+.+...+ ++...++|++.|+.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~----------~~G~~v~vlE~~~~~~~-~~~~~~~~l--~~~~~~~l~~lg~~ 62 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLH----------KAGIDNVILERQTPDYV-LGRIRAGVL--EQGMVDLLREAGVD 62 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHH----------HHTCCEEEECSSCHHHH-HTCCCCCEE--CHHHHHHHHHTTCC
T ss_pred CCCEEEECcCHHHHHHHHHHH----------HCCCCEEEEeCCCCCCC-CCCceEEEE--CHHHHHHHHHcCch
Confidence 457999999999999999998 78999999999886421 111112222 23345677777764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.40 E-value=0.1 Score=43.19 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
..++++|+|.|.+|..+|..|. ..|.+|.+++..+.
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~----------~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFN----------ATGRRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hcchhheEeeccch
Confidence 4579999999999999999997 78999999998765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.22 E-value=0.087 Score=44.07 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
..++++|+|.|..|..+|..|. +.|.+|.++|..+.
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~----------~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFA----------KAGKKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHhh----------ccceEEEEEEecCc
Confidence 4568999999999999999998 78999999988653
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.14 E-value=0.061 Score=44.41 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
+..++++|+|.|..|..+|..|. +.|.+|.++|+.+.
T Consensus 19 ~~p~~vvIiGgG~~G~E~A~~l~----------~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 19 ALPQHLVVVGGGYIGLELGIAYR----------KLGAQVSVVEARER 55 (115)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSSSS
T ss_pred cCCCeEEEECCCHHHHHHHHHHh----------hcccceEEEeeecc
Confidence 34579999999999999999998 78999999988654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=89.97 E-value=0.43 Score=42.32 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=70.4
Q ss_pred cEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|+|.+|+. ..+.+.+ .....+++ +.|+|+++.+.+.+ .+...++.|. ++.+++ ++.|+|
T Consensus 5 rigiIG~G~~g~~~h~~~l~~--------~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~--~ell~~---~~id~v 71 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKN--------LSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSY--EELLES---GLVDAV 71 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHT--------TTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCH--HHHHHS---SCCSEE
T ss_pred EEEEEcCCHHHHHHHHHHHHh--------CCCCeEEEEEEeccHhhhhhhhccccccceeeee--eccccc---ccccee
Confidence 6899999999987 4677761 01223555 66999999888765 4555555432 345543 567999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHcCCCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l----~~~Gad~vi~p 531 (663)
+++|+++ .....+..+-+.+ .+|++. +.+.++.+.+ ++.|....+.-
T Consensus 72 ~I~tp~~-~h~~~~~~al~~g--k~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~ 125 (181)
T d1zh8a1 72 DLTLPVE-LNLPFIEKALRKG--VHVICEKPISTDVETGKKVVELSEKSEKTVYIAE 125 (181)
T ss_dssp EECCCGG-GHHHHHHHHHHTT--CEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEEC
T ss_pred ecccccc-ccccccccccccc--hhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 9998875 4455666666665 367773 3455544444 55677655543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.24 Score=43.73 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=55.6
Q ss_pred CCCcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh----cCCC
Q 006034 402 GSEPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS----AGIT 476 (663)
Q Consensus 402 ~~~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~----a~i~ 476 (663)
+.++|+|.|.+ .+|+..++..+ ..|.+|++++.++++.+.+++.|.+.+. |.++++..++ -+=+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak----------~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi-~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAK----------ALGAKLIGTVGTAQKAQSALKAGAWQVI-NYREEDLVERLKEITGGK 96 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTC
T ss_pred CCCEEEEEccccccchHHHHHHH----------HhCCeEeecccchHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHhCCC
Confidence 34678888554 59999988876 7899999999999999999998876554 5666544433 2445
Q ss_pred CCcEEEEEcCCH
Q 006034 477 SPKAVMIMYTDK 488 (663)
Q Consensus 477 ~a~~vv~~~~dd 488 (663)
..|.++-+.+.+
T Consensus 97 g~d~v~d~~g~~ 108 (179)
T d1qora2 97 KVRVVYDSVGRD 108 (179)
T ss_dssp CEEEEEECSCGG
T ss_pred CeEEEEeCccHH
Confidence 678766666543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.88 E-value=0.2 Score=47.20 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-H-HHHHhcC--CCEEEecCCCHHHHHhc--
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-V-KESRKLG--FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~-~~~~~~~--~~vi~GD~~~~~~L~~a-- 473 (663)
.+++ ++|.|. +-+|+.+++.|. ++|++|++.|++++. . +..++.+ ...+.+|.+|++-.+++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la----------~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~ 72 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFA----------VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGK 72 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHH
Confidence 3444 555676 459999999998 899999999987643 2 2333433 45678999999877653
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 73 ~~~~~~G~iDilVnn 87 (247)
T d2ew8a1 73 QVISTFGRCDILVNN 87 (247)
T ss_dssp HHHHHHSCCCEEEEC
T ss_pred HHHHHcCCCCEEEEC
Confidence 23456766544
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.66 E-value=0.73 Score=37.67 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=58.6
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHH-HHHHHHHHhCCCCcEEEEec
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTI-EAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~-~~~~~~r~~~~~~~iia~~~ 512 (663)
++.+||.|+...+.+. +.|+.+.... +-.+.++...-++.|.++.-.+=...|- ..+...|+ .+..+++....
T Consensus 3 rILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~a~~~~~~~~~dliilD~~mp~~~g~~~~~~~~~-~~~~piI~lt~ 80 (120)
T d1zgza1 3 HIVIVEDEPVTQARLQSYFTQEGYTVSVTA-SGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRE-RSTVGIILVTG 80 (120)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEEES
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHhcCCCEEeeehhhccchhHHHHHHHhc-cCCCeEEEEEc
Confidence 5888998888755443 4777776543 3345555555577888877665433333 34444444 45667776554
Q ss_pred --ChhhHHHHHHcCCCeEEcCch
Q 006034 513 --DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 513 --~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+.+......++|||..+.-..
T Consensus 81 ~~~~~~~~~a~~~Ga~dyl~KP~ 103 (120)
T d1zgza1 81 RSDRIDRIVGLEMGADDYVTKPL 103 (120)
T ss_dssp SCCHHHHHHHHHHTCSEEEESSC
T ss_pred cCCHHHHHHHHHCCCCEEEECCC
Confidence 445566677899998776554
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=89.57 E-value=0.21 Score=47.21 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=43.3
Q ss_pred CcEEEEcC-Cc--chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH-HHHHh---cCCCEEEecCCCHH
Q 006034 404 EPVVIVGF-GQ--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRK---LGFPILYGDASRPA 468 (663)
Q Consensus 404 ~~viI~G~-g~--~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~-~~~~~---~~~~vi~GD~~~~~ 468 (663)
++++|.|. |. +|+.+|+.|. ++|.+|++.++|+++. +...+ .....++.|.++++
T Consensus 7 K~~lItGaag~~GIG~aiA~~la----------~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~ 68 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQ----------EQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEE 68 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHH----------HTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH----------HcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeeccccc
Confidence 46788884 43 9999999998 8999999999998775 44544 24678889999875
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=89.49 E-value=0.27 Score=44.19 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=53.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+++.|+ ..|.+|...|+.+.......+.+... ..+-++. .+++|.+
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~----------~fg~~v~~~d~~~~~~~~~~~~~~~~---~~~l~~~-----l~~sD~v 104 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLA----------PFDVHLHYTDRHRLPESVEKELNLTW---HATREDM-----YPVCDVV 104 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHG----------GGTCEEEEECSSCCCHHHHHHHTCEE---CSSHHHH-----GGGCSEE
T ss_pred cccceeeccccccchhhhhhhh----------ccCceEEEEeeccccccccccccccc---cCCHHHH-----HHhccch
Confidence 4568999999999999999997 78999999998654433333322211 1222333 3568877
Q ss_pred EEEcCCHH--HHHHHHHHHHHhCCC
Q 006034 482 MIMYTDKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~--~n~~~~~~~r~~~~~ 504 (663)
++..+-.+ .++.-....+.+.++
T Consensus 105 ~~~~plt~~T~~li~~~~l~~mk~g 129 (188)
T d2naca1 105 TLNCPLHPETEHMINDETLKLFKRG 129 (188)
T ss_dssp EECSCCCTTTTTCBSHHHHTTSCTT
T ss_pred hhcccccccchhhhHHHHHHhCCCC
Confidence 77666433 344444455555444
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.28 E-value=0.22 Score=47.12 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=47.4
Q ss_pred CCCCcEEEE-cC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--C--CCEEEecCCCHHHH
Q 006034 401 EGSEPVVIV-GF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--G--FPILYGDASRPAVL 470 (663)
Q Consensus 401 ~~~~~viI~-G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~--~~vi~GD~~~~~~L 470 (663)
.++++++|+ |. .-+|+.+|+.|.+.. .+|++|+++++|+++.+.+.+ . + ...+.+|.+|++-.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~-------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v 75 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLL-------SPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGV 75 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTB-------CTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcc-------cCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHH
Confidence 466777666 66 459999999996211 479999999999998776643 1 2 35678999998755
Q ss_pred Hh
Q 006034 471 LS 472 (663)
Q Consensus 471 ~~ 472 (663)
++
T Consensus 76 ~~ 77 (259)
T d1oaaa_ 76 QR 77 (259)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.22 E-value=1.5 Score=37.31 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=57.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHH--HH----HHHh------cCCCEEEecCCCHHH
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VK----ESRK------LGFPILYGDASRPAV 469 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~--~~----~~~~------~~~~vi~GD~~~~~~ 469 (663)
+|.|+|. |++|+.++..|. .++ .+++++|.+++. .+ .+.+ ...++..+...|.+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~----------~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~- 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLA----------KEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR- 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------TCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-
Confidence 4899995 999999999987 444 489999988742 22 2222 11233333233443
Q ss_pred HHhcCCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 006034 470 LLSAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~ 516 (663)
..++||.+|++.+. | ..|..+ +..+++.+|+ .++. +.||-+
T Consensus 71 ----~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~iiv-VtNPvD 126 (145)
T d1hyea1 71 ----IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIFV-ITNPVD 126 (145)
T ss_dssp ----GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEE-CSSSHH
T ss_pred ----HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEEE-EcCchH
Confidence 34689988887542 1 345443 3445566766 4554 667754
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=89.21 E-value=0.28 Score=45.69 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=50.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH--HHHHhcCCCCCcE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP--AVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~--~~L~~a~i~~a~~ 480 (663)
+.++|.|. +-+|+.+++.|. ++|++|++.|+|++..+ +.+...+..|.+++ ++.++. .+-|.
T Consensus 5 K~~lVTGas~GIG~aia~~l~----------~~Ga~V~~~~r~~~~l~---~~~~~~~~~Dv~~~~~~~~~~~--g~iD~ 69 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLS----------QEGAEVTICARNEELLK---RSGHRYVVCDLRKDLDLLFEKV--KEVDI 69 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHH---HTCSEEEECCTTTCHHHHHHHS--CCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHH---hcCCcEEEcchHHHHHHHHHHh--CCCcE
Confidence 46778887 559999999998 89999999999987655 44567788898874 344443 46787
Q ss_pred EEEEc
Q 006034 481 VMIMY 485 (663)
Q Consensus 481 vv~~~ 485 (663)
+|-..
T Consensus 70 lVnnA 74 (234)
T d1o5ia_ 70 LVLNA 74 (234)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 66543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.19 E-value=0.12 Score=50.75 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=48.3
Q ss_pred cE-EEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-----HHH-------HHHhcCCCEEEecCCCHHHH
Q 006034 405 PV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVK-------ESRKLGFPILYGDASRPAVL 470 (663)
Q Consensus 405 ~v-iI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-----~~~-------~~~~~~~~vi~GD~~~~~~L 470 (663)
+| +|.|. |-+|+.+++.|. ++|++|+.+|+.+. +.+ .-.+.+..++.||.+|++.+
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll----------~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 71 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLL----------EKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 71 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHH
T ss_pred CEEEEecCCcHHHHHHHHHHH----------HCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhh
Confidence 57 78876 789999999997 78999999998643 111 11124578999999999998
Q ss_pred HhcCCC-CCcEEEEE
Q 006034 471 LSAGIT-SPKAVMIM 484 (663)
Q Consensus 471 ~~a~i~-~a~~vv~~ 484 (663)
+++--+ +.+.++..
T Consensus 72 ~~~~~~~~~~~v~~~ 86 (347)
T d1t2aa_ 72 VKIINEVKPTEIYNL 86 (347)
T ss_dssp HHHHHHHCCSEEEEC
T ss_pred HHHHhhcccceeeee
Confidence 876322 33444433
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.13 E-value=0.1 Score=44.23 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
..+|++|+|.|..|..+|..|. +.|.+|.++|.++..
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~----------~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAI----------KANMHVTLLDTAARV 70 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSST
T ss_pred cCCEEEEECCchHHHHHHHHHH----------hhCcceeeeeecccc
Confidence 4579999999999999999998 789999999987653
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.10 E-value=0.18 Score=45.48 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=35.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL 455 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~ 455 (663)
+|.|+|.|.+|..+|..+ +.|++|+.+|.|+++++.+.+.
T Consensus 2 kI~ViGlG~vGl~~a~~~-----------a~g~~V~g~Din~~~v~~l~~g 41 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLL-----------SLQNEVTIVDILPSKVDKINNG 41 (196)
T ss_dssp EEEEECCSHHHHHHHHHH-----------TTTSEEEEECSCHHHHHHHHTT
T ss_pred EEEEECCChhHHHHHHHH-----------HCCCcEEEEECCHHHHHHHhhc
Confidence 478999999999999877 4599999999999999988763
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.04 E-value=0.57 Score=41.27 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH----HHHhcCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA----VLLSAGIT 476 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~----~L~~a~i~ 476 (663)
..++|+|.|. |.+|+..++..+ ..|.++++++.++++.+.+++.|...+. |..+++ +.+..+=+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~----------~~g~~vi~~~~~~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAK----------MIGARIYTTAGSDAKREMLSRLGVEYVG-DSRSVDFADEILELTDGY 93 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCcccccchhhc----------cccccceeeecccccccccccccccccc-cCCccCHHHHHHHHhCCC
Confidence 3457787775 999999999886 7899999999999999999988866554 444443 33334657
Q ss_pred CCcEEEEEcCCH
Q 006034 477 SPKAVMIMYTDK 488 (663)
Q Consensus 477 ~a~~vv~~~~dd 488 (663)
.+|.++-+.+++
T Consensus 94 g~d~v~d~~g~~ 105 (183)
T d1pqwa_ 94 GVDVVLNSLAGE 105 (183)
T ss_dssp CEEEEEECCCTH
T ss_pred CEEEEEecccch
Confidence 799888888864
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=89.00 E-value=0.34 Score=45.96 Aligned_cols=72 Identities=18% Similarity=0.089 Sum_probs=48.5
Q ss_pred CcEEEEcC-C--cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---HHHHHh--cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-G--QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---VKESRK--LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g--~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---~~~~~~--~~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. | -+|+.+|+.|. ++|.+|++.++|++. ++.+.+ ....+...|.++++..+++
T Consensus 6 K~alITGaag~~GIG~AiA~~la----------~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCF----------NQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYN 75 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHH----------TTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHH
Confidence 46778885 4 49999999998 899999999999753 333333 3355667777777654432
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
.....|.+|...
T Consensus 76 ~~~~~~g~id~lV~na 91 (274)
T d2pd4a1 76 SVKKDLGSLDFIVHSV 91 (274)
T ss_dssp HHHHHTSCEEEEEECC
T ss_pred HHHHHcCCCCeEEeec
Confidence 234556555433
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.99 E-value=0.31 Score=40.33 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=65.2
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
++.+||.|+...+.+. +.|+.+..-. +-.+.++.+.-.+.|.+++-..= +..-...+...|+.+++++++....
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~-~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~piI~lt~ 81 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLSGFEVATAV-DGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHHhcCCCCEEEEEEe
Confidence 5788999888755444 4788876532 33456666666788988776542 3456788899999999988776554
Q ss_pred --ChhhHHHHHHcCCCeEEcCc
Q 006034 513 --DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 513 --~~~~~~~l~~~Gad~vi~p~ 532 (663)
+.++.....++||+..+.-.
T Consensus 82 ~~~~~~~~~a~~~Ga~dyl~KP 103 (121)
T d1ys7a2 82 RSSVDDRVAGLEAGADDYLVKP 103 (121)
T ss_dssp CCTTTCCCTTTTTTCSEEEESS
T ss_pred eCCHHHHHHHHHCCCCEEEECC
Confidence 44555667789999766554
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.11 Score=43.60 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
..+|++|+|.|.+|-.+|..|. +.|.+|+++++++
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~----------~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILS----------ALGSKTSLMIRHD 55 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSS
T ss_pred cCCEEEEEcCCccHHHHHHHHh----------cCCcEEEEEeecc
Confidence 4579999999999999999998 7899999999864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.96 E-value=0.1 Score=49.41 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
|+|+|||.|.-|...|..|. +.|++|+++|.++.
T Consensus 2 KkV~IIGaG~aGL~aA~~La----------~~G~~V~vlE~~~~ 35 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLK----------IHGLNVTVFEAEGK 35 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TTSCEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCCEEEEeCCCC
Confidence 57999999999999999998 78999999998764
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.90 E-value=0.19 Score=49.55 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~ 472 (663)
.-++|+|.|. |-+|..+++.|. ++|++|++..+|+++.+.+.+ .....+.||.+|++.+.+
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll----------~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 79 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLL----------EHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred CcCEEEEECCCCHHHHHHHHHHH----------HCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhh
Confidence 3468999986 779999999997 789999999988877655432 223457799999998876
Q ss_pred cCCCCCcEEEEEcC
Q 006034 473 AGITSPKAVMIMYT 486 (663)
Q Consensus 473 a~i~~a~~vv~~~~ 486 (663)
+ +.++|.++....
T Consensus 80 ~-~~~~~~v~~~a~ 92 (342)
T d1y1pa1 80 V-IKGAAGVAHIAS 92 (342)
T ss_dssp T-TTTCSEEEECCC
T ss_pred h-cccchhhhhhcc
Confidence 4 567887765443
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=88.83 E-value=0.27 Score=43.16 Aligned_cols=109 Identities=7% Similarity=-0.047 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~ 479 (663)
..+-+|.+.-.|+.+.+-++.=- ....+..-|+.++.++.-+ ++.-+.+.-+++|
T Consensus 33 g~rP~v~la~lG~~a~h~ara~f------------------------~~n~f~~gGfev~~~~~~~~~e~v~aa~~~~a~ 88 (163)
T d7reqb2 33 SERPKVFLACLGTRRDFGGREGF------------------------SSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQ 88 (163)
T ss_dssp SSCCBCEEEECSCHHHHHHHHHH------------------------HHHHHHHTTCBCCEEESCCHHHHHHHHHHHTCS
T ss_pred CCCCeEEEEcCCChhhhhhHHHH------------------------HHHHHHccCeeeccCCCCCcHHHHHHHHhCCCC
Confidence 34457888888888855443210 1223334566666655433 3333444556889
Q ss_pred EEEEEcCCHHHHH---HHHHHHHHhCCCCcEEEEe-cChhhHHHHHHcCCCeEEcCch
Q 006034 480 AVMIMYTDKKRTI---EAVQRLRLAFPAIPIYARA-QDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 480 ~vv~~~~dd~~n~---~~~~~~r~~~~~~~iia~~-~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.++++..|+...- .++..+|+.+++..+++-. ..+++...++++|+|..+.+-.
T Consensus 89 vvvicssd~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i~~G~ 146 (163)
T d7reqb2 89 VADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGM 146 (163)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEEECTTC
T ss_pred EEEEecCccchHHHHHHHHHHHHhcccceeEEEecCCCcccHHHHHhCCCCeEecCCC
Confidence 8888887654433 3566677777765555433 4556778899999999999984
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=88.81 E-value=0.86 Score=37.26 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=64.0
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+|.+||.|+...+.++ +.|+.|...+ +-.+.++...-++.|.+++-..= +..-...+..+|+.+++++++....
T Consensus 2 rILvVDDd~~~~~~l~~~L~~~G~~v~~a~-~g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~~~~~~~pvi~lt~ 80 (119)
T d2pl1a1 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAE-DAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEES
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHhcccceeehhccCCCchhHHHHHHHHhcCcccceEeeec
Confidence 5789999998755544 4788776533 23445655555778877665543 2345678888999888888776555
Q ss_pred C--hhhHHHHHHcCCCeEEcCc
Q 006034 513 D--MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 513 ~--~~~~~~l~~~Gad~vi~p~ 532 (663)
. .+......++|||..+.-.
T Consensus 81 ~~~~~~~~~a~~~Ga~~yl~KP 102 (119)
T d2pl1a1 81 RESWQDKVEVLSAGADDYVTKP 102 (119)
T ss_dssp CCCHHHHHHHHHTTCSEEEESS
T ss_pred cCCHHHHHHHHHcCCCEEEECC
Confidence 3 4556677789999876654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.79 E-value=0.3 Score=46.52 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=51.5
Q ss_pred CCCCcEEEE-c-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHH----HHhcC--CCEEEecCCCHHHHH
Q 006034 401 EGSEPVVIV-G-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKE----SRKLG--FPILYGDASRPAVLL 471 (663)
Q Consensus 401 ~~~~~viI~-G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~----~~~~~--~~vi~GD~~~~~~L~ 471 (663)
..+++++++ | .+-+|+.+++.|. ++|++|++.+.+. +..+. +++.+ ...+.+|.+|++-.+
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la----------~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~ 84 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELG----------RRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIV 84 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHH
Confidence 466666555 5 5889999999998 7999999999874 44333 33444 456779999988765
Q ss_pred hc------CCCCCcEEEEEc
Q 006034 472 SA------GITSPKAVMIMY 485 (663)
Q Consensus 472 ~a------~i~~a~~vv~~~ 485 (663)
+. ...+-|.+|...
T Consensus 85 ~~~~~~~~~~g~idilV~na 104 (272)
T d1g0oa_ 85 RMFEEAVKIFGKLDIVCSNS 104 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHhCCCCcccccc
Confidence 42 223567665544
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.78 E-value=0.094 Score=49.30 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=49.3
Q ss_pred CcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|.+ -+|+.+++.|. ++|.+|++.|++++..+ ....+..|.+|++-.+++ ...
T Consensus 8 K~~lITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g 72 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLA----------ADGHKVAVTHRGSGAPK-----GLFGVEVDVTDSDAVDRAFTAVEEHQG 72 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSSCCCT-----TSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCcchhc-----CceEEEEecCCHHHHHHHHHHHHHhcC
Confidence 346666765 59999999998 89999999999987644 567789999998876542 123
Q ss_pred CCcEEEEE
Q 006034 477 SPKAVMIM 484 (663)
Q Consensus 477 ~a~~vv~~ 484 (663)
+-|.+|-.
T Consensus 73 ~iDiLVnn 80 (237)
T d1uzma1 73 PVEVLVSN 80 (237)
T ss_dssp SCSEEEEE
T ss_pred CceEEEee
Confidence 56766654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.62 E-value=1.4 Score=37.40 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=60.6
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCE-E--EecCCCHHHHHhcCCCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPI-L--YGDASRPAVLLSAGITS 477 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~v-i--~GD~~~~~~L~~a~i~~ 477 (663)
++.|+|. |++|+.++-.|..+ .....+++++|.++.....+.+ -.... . .-+..+.+. .++
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~-------~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-----~~~ 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQ-------LPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-----LEG 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH-------SCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-----HTT
T ss_pred EEEEEcCCChHHHHHHHHHHhC-------CCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-----cCC
Confidence 4889994 99999999877410 1245789999987754333222 11111 1 112223333 458
Q ss_pred CcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH
Q 006034 478 PKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 478 a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
+|.+|++.+. | ..|.. ++..+++.+|+ .++.-+.||-+.
T Consensus 70 aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~-aivivvtNPvD~ 123 (145)
T d2cmda1 70 ADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPK-ACIGIITNPVNT 123 (145)
T ss_dssp CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSSHHH
T ss_pred CCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCC-cEEEEccCCchH
Confidence 8988887752 2 34544 34566777888 567778887664
|
| >d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TrkA C-terminal domain-like superfamily: TrkA C-terminal domain-like family: TrkA C-terminal domain-like domain: Potassium channel-related protein MthK, C-terminal domain species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.52 E-value=0.048 Score=43.27 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=49.1
Q ss_pred HHHHHHHHhcccccchhhhcccCCc-chhcccccccchhh------hhhhccCCCCCCCcccccCCCCCCCCcCCCCCCc
Q 006034 554 VTFLRQLVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRVA------DIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGV 626 (663)
Q Consensus 554 ~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~ 626 (663)
..++.+.+....+..+.|+.++++. ..++++.+++++.. .+.| +++....|.+++++++||++
T Consensus 5 ~~~v~d~l~~~~~~~i~Ei~V~~~S~lvGktl~el~l~~~~~~~ViaI~r----------~g~~i~~p~~~~~l~~gD~L 74 (92)
T d2fy8a2 5 AMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR----------GDELIIDPPRDYSFRAGDII 74 (92)
T ss_dssp HHHHHHHHTSCSSCEEEEEECCSSSTTTTCBHHHHCHHHHHSCEEEEEEE----------TTEEEESCCTTCBCCTTCEE
T ss_pred hhhHHHHhhccCCCEEEEEEECCCCccCCCCHHHcCCchhcCeEEEEEEe----------CCceecCCCCccEeCCCCEE
Confidence 3456666777788999999888754 23555555554443 2222 34455669999999999999
Q ss_pred eEEEeecC
Q 006034 627 LYCELNGT 634 (663)
Q Consensus 627 ~~~~~~~~ 634 (663)
+..|.+.+
T Consensus 75 ~v~G~~~~ 82 (92)
T d2fy8a2 75 LGIGKPEE 82 (92)
T ss_dssp EEEECHHH
T ss_pred EEEECHHH
Confidence 99998754
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.47 E-value=0.15 Score=49.50 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=48.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-----HHHHHH-hcCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR-KLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-----~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
++|+|.|. |-+|+.+++.|. ++|++|..+|++.. +.+.+. +.+..++.+|.+|.+.+.+.-..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll----------~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 70 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLL----------EKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIK 70 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcc
Confidence 46899986 889999999997 68999999998653 333333 24578899999999988764333
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.41 E-value=0.5 Score=41.49 Aligned_cols=63 Identities=21% Similarity=0.070 Sum_probs=51.6
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.|++++++.-|.|++.-..-..-...+..+|..+ +++++-..+++..+.++++|+|++++...
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~lGa~~~i~~~~ 81 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALGAEEAATYAE 81 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTTCSEEEEGGG
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccccccceeeehhh
Confidence 5788999999988775544556677788898887 47888889999999999999999998764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=88.35 E-value=0.12 Score=48.86 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=29.4
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
|+|+|.|-.|..+|..|. ++|.+|+++|+++
T Consensus 7 vvIIGaGi~Gls~A~~La----------~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLA----------KENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHH----------HTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHH----------HCCCcEEEEeCCC
Confidence 999999999999999998 7899999999975
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.32 E-value=0.47 Score=41.86 Aligned_cols=64 Identities=16% Similarity=0.042 Sum_probs=52.5
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchH
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAE 534 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~ 534 (663)
.++.++++.=|.|++. +.=..=+.+++.+|..+++ +|++...+++..+..++.|+|++++++.+
T Consensus 19 a~~~a~~~~g~~VlI~-GaG~vGl~~~q~ak~~Ga~-~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~ 82 (174)
T d1jqba2 19 GAELADIEMGSSVVVI-GIGAVGLMGIAGAKLRGAG-RIIGVGSRPICVEAAKFYGATDILNYKNG 82 (174)
T ss_dssp HHHHTTCCTTCCEEEE-CCSHHHHHHHHHHHTTTCS-CEEEECCCHHHHHHHHHHTCSEEECGGGS
T ss_pred HHHHhCCCCCCEEEEE-cCCcchhhhhhhhhccccc-ccccccchhhhHHHHHhhCccccccccch
Confidence 3577888887777664 4445678889999988876 79999999999999999999999999863
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=0.93 Score=39.59 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=48.9
Q ss_pred HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 471 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+.++++.-+.|++.-.....-..++..+|..+ +++++.+.+++..+.+++.|+|++++++.
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~ 82 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNHRE 82 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTS
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccC--cccccccccccccccccccCccccccccc
Confidence 45678777777666544567778888999997 46888888898999999999999998875
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.25 E-value=0.13 Score=50.47 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=33.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK 450 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~ 450 (663)
.++|+|+|.|-.|...|..|. +.|++|.|+|.++..-.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~----------k~G~~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLA----------EKGHQVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------TTTCEEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHH----------hCCCCEEEEECCCCCcC
Confidence 467999999999999999998 78999999999987543
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.22 E-value=0.9 Score=37.18 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=63.9
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
.++.+||.|+...+.++ +.|+.|... .+-.+.++.+.-++.|.++.-..=. ..-...+...|+.++..+++...
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g~~v~~a-~~~~~al~~l~~~~~dlillD~~mp~~~G~~~~~~~r~~~~~~~ii~lt 81 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSGYDVITA-SDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLT 81 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE-SSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHhcccccEEEecccccCCCCchhhhhhhccCCCCEEEEEE
Confidence 46889998888765544 477877653 2334555555556889887766543 33466778888888887766654
Q ss_pred --cChhhHHHHHHcCCCeEEcCc
Q 006034 512 --QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 512 --~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.+.+......++|++..+.-.
T Consensus 82 ~~~~~~~~~~~~~~Ga~~yl~KP 104 (121)
T d1mvoa_ 82 AKDEEFDKVLGLELGADDYMTKP 104 (121)
T ss_dssp CTTCCCCHHHHHHTTCCEEEESS
T ss_pred eeCCHHHHHHHHHCCCCEEEECC
Confidence 345667778899998866554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=88.22 E-value=0.09 Score=50.78 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
...++|+|||.|.-|...|..|. +.|++|+|+|.++.
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~----------~~G~~V~vlE~~~~ 64 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLA----------GAGHQVTVLEASER 64 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHH----------HHTCEEEEECSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHH----------HCCCCEEEEeCCCC
Confidence 34568999999999999999998 78999999998775
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=88.22 E-value=2.3 Score=36.94 Aligned_cols=73 Identities=16% Similarity=0.041 Sum_probs=42.4
Q ss_pred CCcEEEEcCCcchHH--HHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCC-EEEecCCCHHHHH
Q 006034 403 SEPVVIVGFGQMGQV--LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFP-ILYGDASRPAVLL 471 (663)
Q Consensus 403 ~~~viI~G~g~~g~~--la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~-vi~GD~~~~~~L~ 471 (663)
+.+|+|+|.|.+|.. +...+.. . .+-...+++.+|.|+++.+...+ .+.+ -+.....+.|.+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~-~-----~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal- 75 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDH-L-----EEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAF- 75 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHT-T-----TTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH-
T ss_pred CceEEEECCChhhhHHHHHHHHhh-h-----hhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhcc-
Confidence 457999999998754 3333321 0 00123589999999999753221 2332 222222233444
Q ss_pred hcCCCCCcEEEEEcC
Q 006034 472 SAGITSPKAVMIMYT 486 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~ 486 (663)
++||.||++..
T Consensus 76 ----~~AD~Vvitag 86 (167)
T d1u8xx1 76 ----TDVDFVMAHIR 86 (167)
T ss_dssp ----SSCSEEEECCC
T ss_pred ----CCCCEEEECCC
Confidence 68998888875
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.19 Score=46.55 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=54.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.|+|.|. |-+|+.++++|. ++| ++|.++.+++.....-.........+|.++.+-+.++ ++.+|
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll----------~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~-~~~~d 82 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEIL----------EQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASA-FQGHD 82 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH----------HHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGG-GSSCS
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------hCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccc-ccccc
Confidence 356999986 999999999997 445 4799999887654433335677888999998888754 35689
Q ss_pred EEEEEcC
Q 006034 480 AVMIMYT 486 (663)
Q Consensus 480 ~vv~~~~ 486 (663)
+++.+..
T Consensus 83 ~vi~~~~ 89 (232)
T d2bkaa1 83 VGFCCLG 89 (232)
T ss_dssp EEEECCC
T ss_pred ccccccc
Confidence 8887653
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=88.11 E-value=0.21 Score=46.76 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=49.8
Q ss_pred CcE-EEEcC-CcchHHHHHHhcccccCCCCCCCCCCC-------EEEEeCChHHHHHHHh----cC--CCEEEecCCCHH
Q 006034 404 EPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-------FVAFDLNPSVVKESRK----LG--FPILYGDASRPA 468 (663)
Q Consensus 404 ~~v-iI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~-------vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~ 468 (663)
+|| +|.|. +-+|+.+++.|. ++|++ |++.++|+++.+++.+ .+ ...+.+|.+|++
T Consensus 1 K~VvlITGas~GIG~aia~~la----------~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~ 70 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFA----------RAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMA 70 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHH----------HHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH----------HhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 465 55677 459999999997 77877 8999999998776653 33 345788999988
Q ss_pred HHHhc------CCCCCcEEEEE
Q 006034 469 VLLSA------GITSPKAVMIM 484 (663)
Q Consensus 469 ~L~~a------~i~~a~~vv~~ 484 (663)
-.+++ ...+-|.+|-.
T Consensus 71 ~v~~~~~~~~~~~g~iDilvnn 92 (240)
T d2bd0a1 71 DVRRLTTHIVERYGHIDCLVNN 92 (240)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEC
T ss_pred HHHHHHHHHHHHcCCcceeecc
Confidence 65431 33466766543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=88.03 E-value=0.19 Score=47.66 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=47.8
Q ss_pred cEEEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHH----h-cC--CCEEEecCCCHHHHHhc--
Q 006034 405 PVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESR----K-LG--FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 405 ~viI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~----~-~~--~~vi~GD~~~~~~L~~a-- 473 (663)
.++|.|.++ +|+.+|+.|. ++|.+|++.+++ ++..+++. + .+ ...+..|.+|++-.+++
T Consensus 6 ~alITGas~GIG~aiA~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 75 (260)
T d1x1ta1 6 VAVVTGSTSGIGLGIATALA----------AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVD 75 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHH----------HTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 455556654 9999999998 899999999986 45544433 2 23 44567999998876542
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 76 ~~~~~~G~iDiLVnn 90 (260)
T d1x1ta1 76 NAVRQMGRIDILVNN 90 (260)
T ss_dssp HHHHHHSCCSEEEEC
T ss_pred HHHHHhCCCcEEEee
Confidence 12356766544
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.98 E-value=1.6 Score=35.73 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=65.3
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEec
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
.|.+||.|+...+.++ +.|+.+..- .+-.+.++...-.+.|.+++-..=. ..-...+..+|+.+|++++|....
T Consensus 5 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a-~~~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~~~~~~~piI~~t~ 83 (123)
T d1krwa_ 5 IVWVVDDDSSIRWVLERALAGAGLTCTTF-ENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTA 83 (123)
T ss_dssp EEEEESSSHHHHHHHHHHHHHTTCEEEEE-SSSHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHHHHSSSCCEEESCC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEe-CCHHHHHHHHHhCCCCEEEehhhcCCchHHHHHHHHHHhCCCCeEEEEec
Confidence 5888898888755544 467877653 2345667776667889877665432 344667888899999999777555
Q ss_pred --ChhhHHHHHHcCCCeEEcCc
Q 006034 513 --DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 513 --~~~~~~~l~~~Gad~vi~p~ 532 (663)
+.++.....++|++..+.-.
T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP 105 (123)
T d1krwa_ 84 HSDLDAAVSAYQQGAFDYLPKP 105 (123)
T ss_dssp CSCHHHHHHHHHHTEEEECSSC
T ss_pred CCCHHHHHHHHHcCCCeEEeCc
Confidence 44566677889999876654
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=87.89 E-value=0.93 Score=37.60 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=64.6
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHh--CCCCc
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLA--FPAIP 506 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~--~~~~~ 506 (663)
.++.+|.+||.|+...+.++ +.|+..+.--.+-++.++...=++.|.+++-.+=. ..-...+...|+. .++++
T Consensus 4 ~~~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~~~~~~~p 83 (129)
T d1p6qa_ 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHhCcccCCCe
Confidence 45678999999998755544 46775444322224566666556788776544322 3456677777763 45677
Q ss_pred EEEEe--cChhhHHHHHHcCCCeEEcCc
Q 006034 507 IYARA--QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 507 iia~~--~~~~~~~~l~~~Gad~vi~p~ 532 (663)
++... .+++......++|+|..+.-.
T Consensus 84 ii~lt~~~~~~~~~~a~~~G~~~~l~KP 111 (129)
T d1p6qa_ 84 FIILTAQGDRALVQKAAALGANNVLAKP 111 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCC
T ss_pred EEEEEecCCHHHHHHHHHCCCCEEEECC
Confidence 77654 456677788999999877654
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=87.88 E-value=2.2 Score=34.62 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=65.7
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHh--CCCCcEEEE
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLA--FPAIPIYAR 510 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~--~~~~~iia~ 510 (663)
++.+||.|+...+.+. +.|+.+..-. +-.+.++...-++.|.+++-..= +..-...+...|+. .++++++..
T Consensus 2 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~lr~~~~~~~~pvi~l 80 (121)
T d1zesa1 2 RILVVEDEAPIREMVCFVLEQNGFQPVEAE-DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 80 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEC-SHHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEC-ChHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHhCccCCCCeEEEE
Confidence 5889999998765544 4788776532 34567887777889977766442 34567778888774 466787765
Q ss_pred e--cChhhHHHHHHcCCCeEEcCc
Q 006034 511 A--QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 511 ~--~~~~~~~~l~~~Gad~vi~p~ 532 (663)
. .+.+......++|++..+.-.
T Consensus 81 t~~~~~~~~~~~~~~G~~d~l~KP 104 (121)
T d1zesa1 81 TARGEEEDRVRGLETGADDYITKP 104 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESS
T ss_pred ECCCCHHHHHHHHHCCCCEEEECC
Confidence 5 355666777899999877654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=87.85 E-value=0.44 Score=46.42 Aligned_cols=74 Identities=26% Similarity=0.308 Sum_probs=53.0
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------------cCCCEEEecCCCHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------------LGFPILYGDASRPA 468 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------------~~~~vi~GD~~~~~ 468 (663)
+..++|+|+|+|. |....+.++ .....++.+||.|++.++.+++ ...+++.||+. +
T Consensus 76 ~~pk~VLiiG~G~-G~~~~~ll~---------~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~--~ 143 (312)
T d1uira_ 76 PEPKRVLIVGGGE-GATLREVLK---------HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR--A 143 (312)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTT---------STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH--H
T ss_pred CCcceEEEeCCCc-hHHHHHHHh---------cCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH--H
Confidence 4567899999996 444444454 2345689999999999876553 24678999997 4
Q ss_pred HHHhcCCCCCcEEEEEcCC
Q 006034 469 VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~d 487 (663)
.|++.+ ++.|.|++-..|
T Consensus 144 ~l~~~~-~~yDvIi~D~~d 161 (312)
T d1uira_ 144 YLERTE-ERYDVVIIDLTD 161 (312)
T ss_dssp HHHHCC-CCEEEEEEECCC
T ss_pred HhhhcC-CcccEEEEeCCC
Confidence 566655 689988877644
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.80 E-value=0.21 Score=46.96 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=45.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~ 472 (663)
+.|+|.|. +-+|+.++++|. ++|. .|+...+|+++.+++.+ .+..++..|.+|++-.++
T Consensus 4 KtilITGassGIG~a~a~~la----------~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~ 68 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLV----------KDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDT 68 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHH----------TCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHH
Confidence 56777776 569999999997 6675 57777999999888776 345678889998876653
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.7 Score=37.99 Aligned_cols=93 Identities=9% Similarity=0.042 Sum_probs=60.0
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHH-HHHHHHHHHHHhCCCCcEEEEe-
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPAIPIYARA- 511 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~-~n~~~~~~~r~~~~~~~iia~~- 511 (663)
+|.+||.|+...+.++ +.|+.+...+ +-.+.++...-.+.|.+++-..-.. .-...+...|+. ++++++...
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~~-~~~pii~lt~ 81 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEAEGYDVFEAT-DGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLTG 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEES-SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEES
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-ChHHHHHHHHhcCCCEEEeecccCCccCcHHHHHHHhc-CCCcEEEEEC
Confidence 6788888887755444 4678776542 3345565555567887776654332 223455666664 678877764
Q ss_pred -cChhhHHHHHHcCCCeEEcCc
Q 006034 512 -QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 512 -~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.++++.....++|++..+.-.
T Consensus 82 ~~~~~~~~~a~~~Ga~dyl~KP 103 (121)
T d1xhfa1 82 RDNEVDKILGLEIGADDYITKP 103 (121)
T ss_dssp CCSHHHHHHHHHHTCSEEEESS
T ss_pred CCCHHHHHHHHHcCCCEEEeCC
Confidence 455667788899999877654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=87.70 E-value=0.42 Score=42.54 Aligned_cols=75 Identities=9% Similarity=0.058 Sum_probs=56.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-------h-cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-------K-LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-------~-~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|+|.|-.++.++..|.+ ....++.++++++++.+++. + ....+...|..+.+-+.+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~---------~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAI---------EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA- 87 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---------TTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH-
T ss_pred CCEEEEECCcHHHHHHHHHHhh---------cCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhh-
Confidence 4689999999999999999972 33447999999987665432 1 3455667888888877653
Q ss_pred CCCCcEEEEEcCC
Q 006034 475 ITSPKAVMIMYTD 487 (663)
Q Consensus 475 i~~a~~vv~~~~d 487 (663)
..++|.+|-+|+-
T Consensus 88 ~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 88 LASADILTNGTKV 100 (182)
T ss_dssp HHTCSEEEECSST
T ss_pred hcccceeccccCC
Confidence 5788988888763
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.64 Score=40.80 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=50.3
Q ss_pred hcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 472 SAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.++++.-|.|++.-..-..-..++..+|..+ +++++...+++..+.++++|+|++|+++.
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa~~vi~~~~ 82 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGAWQVINYRE 82 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCCeEEEECCC
Confidence 4577777888777666667788888999887 47999999999999999999999999875
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=87.57 E-value=0.26 Score=46.75 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=50.3
Q ss_pred CCCcEE-EEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHH----HHhcC--CCEEEecCCCHHHHHh
Q 006034 402 GSEPVV-IVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKE----SRKLG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~vi-I~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~----~~~~~--~~vi~GD~~~~~~L~~ 472 (663)
.+++++ |.| .+-+|+.+++.|. ++|++|++.+++++ ..+. +++.+ ...+.+|.+|++-.++
T Consensus 5 L~gK~alITGas~GIG~aia~~la----------~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~ 74 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFA----------TEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVIN 74 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 444554 445 4679999999998 89999999998754 3333 33343 4567899999877654
Q ss_pred c------CCCCCcEEEEEc
Q 006034 473 A------GITSPKAVMIMY 485 (663)
Q Consensus 473 a------~i~~a~~vv~~~ 485 (663)
+ ...+-|.+|-..
T Consensus 75 ~~~~~~~~~G~iDiLVnnA 93 (261)
T d1geea_ 75 LVQSAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHhCCCCEeeccc
Confidence 3 223567666543
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.36 E-value=1 Score=37.57 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=68.6
Q ss_pred CCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEE
Q 006034 434 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~ii 508 (663)
+.+.+|.+||.|+...+.+. ..|+.+...+ +-.+.++...-+..|.+++-..=. ..-...+...|+.++.++|+
T Consensus 6 ~~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~-~g~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~~pii 84 (133)
T d2ayxa1 6 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTAN-DGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 84 (133)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEEC-CSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEEC-cHHHHHHHHhccCceEEEEeccCCCCCHHHHHHHHHHhCCCCCEE
Confidence 56778999999998755544 4788876533 234455555567889887766432 34566788888888888876
Q ss_pred EEec--ChhhHHHHHHcCCCeEEcCc
Q 006034 509 ARAQ--DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 509 a~~~--~~~~~~~l~~~Gad~vi~p~ 532 (663)
.... +++......++|++..+.-.
T Consensus 85 ~lt~~~~~~~~~~~~~~G~~~~l~KP 110 (133)
T d2ayxa1 85 GVTANALAEEKQRCLESGMDSCLSKP 110 (133)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESS
T ss_pred EEeccCCHHHHHHHHHcCCCEEEECC
Confidence 6554 45677788899999877665
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=87.29 E-value=0.99 Score=37.87 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=66.9
Q ss_pred CEEEEeCChHHHHHHHh----cCCCEEEecCCCH-HHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 006034 438 PFVAFDLNPSVVKESRK----LGFPILYGDASRP-AVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~-~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
+|.+||.|+...+.+++ .+...+.+.++|. +.++.+.-.+.|.++.-..=. ..-+..+...|+.+|+.+++...
T Consensus 4 ~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~~~G~el~~~ir~~~~~~~vivlt 83 (138)
T d1a04a2 4 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFS 83 (138)
T ss_dssp EEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 68899999887655553 3344556666664 456555556889887765543 34577888999999998866544
Q ss_pred --cChhhHHHHHHcCCCeEEcCc
Q 006034 512 --QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 512 --~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.++++.....++||+..+.-.
T Consensus 84 ~~~~~~~~~~a~~~Ga~~yl~Kp 106 (138)
T d1a04a2 84 VSNHEEDVVTALKRGADGYLLKD 106 (138)
T ss_dssp CCCCHHHHHHHHHTTCSEEEETT
T ss_pred EECCHHHHHHHHHcCCCEEEECC
Confidence 466777788899999877765
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.27 E-value=0.3 Score=43.03 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..++|.|+|||..|+.=|..|+ +.|.+|+|==+.. ...++++++|+.+.. ..+| +++||.
T Consensus 15 k~k~IaViGYGsQG~AhAlNLr----------DSG~~V~VGLr~gs~s~~~A~~~Gf~v~~--------~~eA-~~~aDi 75 (182)
T d1np3a2 15 QGKKVAIIGYGSQGHAHACNLK----------DSGVDVTVGLRSGSATVAKAEAHGLKVAD--------VKTA-VAAADV 75 (182)
T ss_dssp HTSCEEEECCSHHHHHHHHHHH----------HTTCCEEEECCTTCHHHHHHHHTTCEEEC--------HHHH-HHTCSE
T ss_pred CCCEEEEEeeCcHhHHHHhhhh----------hcCCCEEEEcCCCCccHHHHhhhcccccc--------HHHH-hhhcCe
Confidence 3568999999999999999998 7899988876544 356778888998842 2222 578999
Q ss_pred EEEEcCCH
Q 006034 481 VMIMYTDK 488 (663)
Q Consensus 481 vv~~~~dd 488 (663)
++..++|.
T Consensus 76 im~L~PD~ 83 (182)
T d1np3a2 76 VMILTPDE 83 (182)
T ss_dssp EEECSCHH
T ss_pred eeeecchH
Confidence 99999864
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=87.20 E-value=0.14 Score=50.93 Aligned_cols=71 Identities=25% Similarity=0.321 Sum_probs=47.7
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-----HHHHHHH------hcCCCEEEecCCCHHHHH
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-----SVVKESR------KLGFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-----~~~~~~~------~~~~~vi~GD~~~~~~L~ 471 (663)
+.++|.| .|-+|+.+++.|. +.|++|+++|+.+ ++.+.+. ..+..++.||.+|.+.++
T Consensus 2 K~vLITGatGfiGs~lv~~Ll----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLL----------EKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLT 71 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECC---------------------CCEEECCCCSSCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHH
Confidence 4677888 5889999999998 7899999999843 3333222 246788899999999887
Q ss_pred hcCC-CCCcEEEEE
Q 006034 472 SAGI-TSPKAVMIM 484 (663)
Q Consensus 472 ~a~i-~~a~~vv~~ 484 (663)
++=- .+.|.|+-+
T Consensus 72 ~~~~~~~~d~v~h~ 85 (357)
T d1db3a_ 72 RILREVQPDEVYNL 85 (357)
T ss_dssp HHHHHHCCSEEEEC
T ss_pred HHHhccCCCEEEEe
Confidence 5411 134666555
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=2 Score=37.17 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=55.7
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHH
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 541 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~ 541 (663)
.+++++++.-|.|++. +.-..=..+++.+|..+++ +|++.-.+++..+..++.|+|+++++..+.-....+
T Consensus 18 a~~~~~~~~gd~VlI~-G~G~iG~~~~~~a~~~G~~-~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~ 88 (171)
T d1pl8a2 18 ACRRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGAA-QVVVTDLSATRLSKAKEIGADLVLQISKESPQEIAR 88 (171)
T ss_dssp HHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCS-EEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHH
T ss_pred HHHHhCCCCCCEEEEE-CCCccHHHHHHHHHHcCCc-eEEeccCCHHHHHHHHHhCCcccccccccccccccc
Confidence 4678888888877665 4446677888999999876 899999999999999999999999988654333333
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=87.11 E-value=0.35 Score=42.60 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..++++|.|. |.+|+..++..+ ..|.+|++++.++++.+.+++.|...+. |..+. ..+.-+-+.+|.
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak----------~~G~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~-~~~~~~~~g~D~ 94 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVAR----------AMGLRVLAAASRPEKLALPLALGAEEAA-TYAEV-PERAKAWGGLDL 94 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHH----------HTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGH-HHHHHHTTSEEE
T ss_pred CCCEEEEEeccccchhhhhhhhc----------ccccccccccccccccccccccccceee-ehhhh-hhhhhccccccc
Confidence 4457888885 999999999886 7899999999999999999998876554 33332 222234467898
Q ss_pred EEEEcCC
Q 006034 481 VMIMYTD 487 (663)
Q Consensus 481 vv~~~~d 487 (663)
++=++++
T Consensus 95 v~d~~G~ 101 (171)
T d1iz0a2 95 VLEVRGK 101 (171)
T ss_dssp EEECSCT
T ss_pred cccccch
Confidence 8776664
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.85 E-value=0.96 Score=37.97 Aligned_cols=93 Identities=9% Similarity=0.054 Sum_probs=65.1
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+|.+||.|+...+.++ ..|+.+...+ +-.+.++...-.+.|.+++-..- +..-...+..+|+.+|++++|....
T Consensus 2 kILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~~~~~~piI~lT~ 80 (137)
T d1ny5a1 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAE-RGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITG 80 (137)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEES-SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEEEEecCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHhhccccccchHHHhhhhhhHHHHHHHHHHhCCCCCEEEEEC
Confidence 5789999998765544 4688877542 23455555544678988765433 2445678888999999999776544
Q ss_pred --ChhhHHHHHHcCCCeEEcC
Q 006034 513 --DMMHLLDLKKAGATDAILE 531 (663)
Q Consensus 513 --~~~~~~~l~~~Gad~vi~p 531 (663)
+.++.....++||+..+.-
T Consensus 81 ~~~~~~~~~a~~~Ga~dyl~K 101 (137)
T d1ny5a1 81 HGTIKTAVEAMKMGAYDFLTK 101 (137)
T ss_dssp TTCHHHHHHHHTTTCCEEEEE
T ss_pred CCCHHHHHHHHHcCCCEEEeC
Confidence 4567778888999987764
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.80 E-value=0.18 Score=49.32 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=51.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-----HHH-------HHHHhcCCCEEEecCCCHHH
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-----SVV-------KESRKLGFPILYGDASRPAV 469 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-----~~~-------~~~~~~~~~vi~GD~~~~~~ 469 (663)
++.++|.|. |-+|+++++.|. ++|++|+.+|+.. ++. .........+..||.++.+-
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~ 70 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLL----------GKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASS 70 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHH----------HCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHH
Confidence 356788876 999999999998 7899999999742 221 12223456788999999987
Q ss_pred HHhc-CCCCCcEEEEEc
Q 006034 470 LLSA-GITSPKAVMIMY 485 (663)
Q Consensus 470 L~~a-~i~~a~~vv~~~ 485 (663)
++++ .-.+.|.|+-+.
T Consensus 71 ~~~~~~~~~~D~Vih~A 87 (339)
T d1n7ha_ 71 LRRWIDVIKPDEVYNLA 87 (339)
T ss_dssp HHHHHHHHCCSEEEECC
T ss_pred HHHHHhhhccchhhhcc
Confidence 7654 345678776544
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.65 E-value=0.42 Score=39.12 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=37.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--------H----HHHHhcCCCEEEe
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--------V----KESRKLGFPILYG 462 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--------~----~~~~~~~~~vi~G 462 (663)
..++++|+|.|..|-.+|..|.+. ...+.+|.++|+.+.. . +.++++|.++..+
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l-------~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~ 84 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAY-------KPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTK 84 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH-------CCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred cCCeEEEECCcHHHHHHHHHhhhc-------ccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcC
Confidence 457999999999999999665410 1456789999975533 1 2234567777766
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.63 E-value=0.14 Score=42.91 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
+..+|++|+|.|-+|..+|..+. +.|.+|.++|..++
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~----------~~G~~Vtive~~~~ 60 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYS----------TLGSRLDVVEMMDG 60 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHH----------HHTCEEEEECSSSS
T ss_pred ccCCeEEEECCCHHHHHHHHHhh----------cCCCEEEEEEeecc
Confidence 45689999999999999999997 89999999987653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=86.63 E-value=0.14 Score=39.16 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
++|-|+|.|+.|+.++..-. ..|+++.++|.|++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~----------~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGE----------PLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHG----------GGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHH----------HcCCEEEEEcCCCCC
Confidence 46899999999999999987 789999999988764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=86.60 E-value=0.41 Score=44.87 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=48.8
Q ss_pred CcEEEEcCCc---chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHh---
Q 006034 404 EPVVIVGFGQ---MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLS--- 472 (663)
Q Consensus 404 ~~viI~G~g~---~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~--- 472 (663)
+.++|.|.+. +|+.+|+.|. ++|++|++.++|++..+.+.+ ......+.|.++.+..++
T Consensus 6 K~~lITGass~~GIG~aiA~~l~----------~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFA 75 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHH----------HTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHH
Confidence 4567777754 8899999998 899999999999775544332 346778888888775433
Q ss_pred ---cCCCCCcEEEEE
Q 006034 473 ---AGITSPKAVMIM 484 (663)
Q Consensus 473 ---a~i~~a~~vv~~ 484 (663)
....+.|.+|..
T Consensus 76 ~~~~~~~~~d~~v~~ 90 (258)
T d1qsga_ 76 ELGKVWPKFDGFVHS 90 (258)
T ss_dssp HHHTTCSSEEEEEEC
T ss_pred HhhhcccccceEEEe
Confidence 233445555433
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.38 Score=44.93 Aligned_cols=59 Identities=22% Similarity=0.104 Sum_probs=44.9
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHH
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L 470 (663)
.+++ ++|.|. +.+|+.+++.|. ++|++|+++|+|++..+...+ ........|..+.+..
T Consensus 3 lkGKvalITGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 66 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLV----------GQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDV 66 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHhCCCcccccccccccccc
Confidence 4555 466676 559999999998 899999999999988777664 3456677788776544
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.55 E-value=0.15 Score=46.92 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS 447 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~ 447 (663)
+|+|+|.|.-|...|..|. +.|+ +|+|+|+++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~----------~~G~~~V~vlE~~~~ 35 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLS----------EAGITDLLILEATDH 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHH----------HTTCCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHH----------hCCCCcEEEEECCCC
Confidence 6999999999999999998 7885 7999999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.51 E-value=0.94 Score=39.15 Aligned_cols=63 Identities=21% Similarity=-0.003 Sum_probs=51.9
Q ss_pred HHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 468 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
..+++++++.-|.|++. +.-..-...+..+|..+ .++++...+++..+..++.|+|++++++.
T Consensus 18 ~al~~~~~~~g~~VlV~-GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~ 80 (166)
T d1llua2 18 KGLKQTNARPGQWVAIS-GIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLGASLTVNARQ 80 (166)
T ss_dssp HHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHhCCCCCCEEEEe-eccccHHHHHHHHHHcC--CccceecchhhHHHhhhccCccccccccc
Confidence 35678899888877664 44567788889999987 47999999999999999999999998875
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=0.17 Score=48.58 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=46.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH---HHH------hcCCCEEEecCCC--HHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESR------KLGFPILYGDASR--PAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~---~~~------~~~~~vi~GD~~~--~~~ 469 (663)
+.+.+|+|+|.|--|...|..|. +.|++|+|+|.++..-- ..+ +.|.++++|-..+ .+.
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~----------~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l 72 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQ----------SFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVV 72 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHH----------HTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHH
T ss_pred CCCCcEEEECCCHHHHHHHHHHH----------hCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHH
Confidence 34567999999999999999998 78999999998765311 111 2345666653332 256
Q ss_pred HHhcCCC
Q 006034 470 LLSAGIT 476 (663)
Q Consensus 470 L~~a~i~ 476 (663)
+++.|++
T Consensus 73 ~~~lgl~ 79 (449)
T d2dw4a2 73 SKQVNME 79 (449)
T ss_dssp HHHHTCC
T ss_pred HHHcCCc
Confidence 7777875
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.15 E-value=0.19 Score=49.87 Aligned_cols=72 Identities=15% Similarity=0.047 Sum_probs=53.8
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.-+|+|.| .|-+|+.+++.|. ++|++|+++|..+...............+|..|.+.+.++ .++.|.|
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~V 83 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLK----------HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV-TEGVDHV 83 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHH-HTTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHH-hhcCCeE
Confidence 34699997 5999999999998 7899999999754432222224567889999999888775 3677877
Q ss_pred EEEc
Q 006034 482 MIMY 485 (663)
Q Consensus 482 v~~~ 485 (663)
+-+.
T Consensus 84 ih~a 87 (363)
T d2c5aa1 84 FNLA 87 (363)
T ss_dssp EECC
T ss_pred eecc
Confidence 6544
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.00 E-value=0.99 Score=43.80 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=50.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC----ChHHHHHHH-------hcCCCEEEecCCCHHHH
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL----NPSVVKESR-------KLGFPILYGDASRPAVL 470 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~----d~~~~~~~~-------~~~~~vi~GD~~~~~~L 470 (663)
.+.++|.|. |-+|+.+++.|. +.|++|+++|+ +.+..+..+ .....++.||..|...+
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~ 85 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLL----------KLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC 85 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHH----------HCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccc
Confidence 456888875 999999999998 78999999985 222332222 24578899999999988
Q ss_pred HhcCCCCCcEEE
Q 006034 471 LSAGITSPKAVM 482 (663)
Q Consensus 471 ~~a~i~~a~~vv 482 (663)
+..... .+.++
T Consensus 86 ~~~~~~-~~~v~ 96 (341)
T d1sb8a_ 86 NNACAG-VDYVL 96 (341)
T ss_dssp HHHHTT-CSEEE
T ss_pred cccccc-ccccc
Confidence 766443 34343
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=86.00 E-value=1.6 Score=36.29 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=57.4
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEE-EeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|.|+ ||+|+.+++.+. +++++++. +|.+.. ..++++|++
T Consensus 2 ki~i~G~~GrMG~~i~~~~~----------~~~~~l~~~id~~~~-------------------------~~~~~~DVv- 45 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFS----------EKGHELVLKVDVNGV-------------------------EELDSPDVV- 45 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEEETTEE-------------------------EECSCCSEE-
T ss_pred EEEEECCCCHHHHHHHHHHh----------cCCCeEEEEECCCcH-------------------------HHhccCCEE-
Confidence 4899997 999999999886 56666553 343321 123568854
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEec-ChhhHHHHHHcCCCe--EEcCch
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-DMMHLLDLKKAGATD--AILENA 533 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-~~~~~~~l~~~Gad~--vi~p~~ 533 (663)
+-.+..+........+.+.+.. -|+...- ++++.+.++++--+. +..|+.
T Consensus 46 IDFS~p~~~~~~l~~~~~~~~p-~ViGTTG~~~~~~~~i~~~ak~~pv~~a~N~ 98 (128)
T d1vm6a3 46 IDFSSPEALPKTVDLCKKYRAG-LVLGTTALKEEHLQMLRELSKEVPVVQAYSR 98 (128)
T ss_dssp EECSCGGGHHHHHHHHHHHTCE-EEECCCSCCHHHHHHHHHHTTTSEEEECSCT
T ss_pred EEecCHHHHHHHHHHHHhcCCC-EEEEcCCCCHHHHHHHHHHHhhCCEEeeecc
Confidence 5555555555566667777532 3444333 677788888874332 456664
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.81 E-value=1 Score=39.58 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=51.9
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+.++++++.-|.|++. +-=-.=+..++.+|..+.. +||+.-.+++..+..++.|||++|++..
T Consensus 21 v~~~~~~~~g~tVlI~-G~GgvGl~ai~~ak~~G~~-~Vi~vd~~~~kl~~Ak~~GA~~~in~~~ 83 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVF-GLGGVGLSVIMGCKSAGAS-RIIGIDLNKDKFEKAMAVGATECISPKD 83 (176)
T ss_dssp HHTTSCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHHHTCSEEECGGG
T ss_pred HHHhhCCCCCCEEEEE-CCCchhHHHHHHHHHcCCc-eEEEecCcHHHHHHHHhcCCcEEECccc
Confidence 4567888888866555 3345677888999998866 8999999999999999999999999875
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.73 E-value=0.63 Score=44.05 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=34.3
Q ss_pred CcEEEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh
Q 006034 404 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 454 (663)
Q Consensus 404 ~~viI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~ 454 (663)
+.++|.|.++ +|+.+|+.|. ++|.+|+++++|+++.+...+
T Consensus 15 K~alITGassGIG~aiA~~la----------~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLA----------KMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHH
Confidence 4566677755 9999999998 799999999999999877653
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.67 E-value=0.26 Score=46.22 Aligned_cols=62 Identities=18% Similarity=0.059 Sum_probs=46.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~ 472 (663)
+.|+|.|. .-+|+.+|+.|.+. .++|++|++.++|+++.+.+.+ ....++..|.+|++..++
T Consensus 3 KtilITGas~GIG~a~a~~l~~~-------a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 70 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNL-------PQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDK 70 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTS-------SSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHH-------HhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHH
Confidence 36888887 56999999988410 1578999999999988665543 346678899999876553
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=85.48 E-value=0.22 Score=45.31 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~~ 480 (663)
..+++.|+|+|++|+.+|+.|+ ..|.+|.+.|...+.... ..++. ..+ ++.| +++|.
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~----------~fg~~V~~~d~~~~~~~~--~~~~~-----~~~l~~~l-----~~sDi 99 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIME----------GFGAKVITYDIFRNPELE--KKGYY-----VDSLDDLY-----KQADV 99 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCHHHH--HTTCB-----CSCHHHHH-----HHCSE
T ss_pred cCCeEEEecccccchhHHHhHh----------hhcccccccCcccccccc--cceee-----eccccccc-----ccccc
Confidence 3468999999999999999997 789999999977654322 22221 122 2344 46787
Q ss_pred EEEEcCCH--HHHHHHHHHHHHhCCC
Q 006034 481 VMIMYTDK--KRTIEAVQRLRLAFPA 504 (663)
Q Consensus 481 vv~~~~dd--~~n~~~~~~~r~~~~~ 504 (663)
+++..+-. ..++.-....+.+.++
T Consensus 100 i~~~~plt~~T~~li~~~~l~~mk~~ 125 (197)
T d1j4aa1 100 ISLHVPDVPANVHMINDESIAKMKQD 125 (197)
T ss_dssp EEECSCCCGGGTTCBSHHHHHHSCTT
T ss_pred ccccCCccccccccccHHHHhhhCCc
Confidence 87776543 3444445566666655
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=85.15 E-value=0.2 Score=43.71 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=29.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 446 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~ 446 (663)
++|+|+|.|..|..+|..|++ ...+.+|+++|+++
T Consensus 3 krivIvGgG~~G~e~A~~l~~--------~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKL--------ADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------HCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHH--------cCCCCcEEEEECCC
Confidence 589999999999999999972 12346899999887
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.10 E-value=0.39 Score=42.79 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=52.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L~~a 473 (663)
..++|+=+|+|.=...+. |. ..+.+|+.+|.|++.++.+++ . +..+++||+.+. + .
T Consensus 33 ~g~~VLDiGcGsG~~s~~--lA----------~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--~--~ 96 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLE--LA----------GRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--L--C 96 (186)
T ss_dssp TTCEEEEESCTTSHHHHH--HH----------TTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--H--T
T ss_pred CCCEEEEEECCeEccccc--cc----------ccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--c--c
Confidence 345566666665443332 22 345689999999998877764 2 456788886433 3 2
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
..+++|.+++.......--..-...+.+.|+-+++.
T Consensus 97 ~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 97 KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEE
Confidence 456899887654332111122233344555544444
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=85.10 E-value=3.1 Score=36.22 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=41.2
Q ss_pred CcEEEEcCCcchHHH---HHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH--------hcCCC-EEEecCCCHHHHH
Q 006034 404 EPVVIVGFGQMGQVL---ANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR--------KLGFP-ILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~g~~g~~l---a~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~--------~~~~~-vi~GD~~~~~~L~ 471 (663)
-++.|+|.|.+|... ...+.. +.-.+.+++.+|.|+++.+... ..+.. -+.+.-...+.|
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~-------~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL- 74 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT-------PGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI- 74 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC-------GGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc-------cccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc-
Confidence 369999999999653 223320 0123569999999999865422 12222 233322223444
Q ss_pred hcCCCCCcEEEEEcC
Q 006034 472 SAGITSPKAVMIMYT 486 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~ 486 (663)
++||.|++...
T Consensus 75 ----~dad~Vv~~~~ 85 (171)
T d1obba1 75 ----IDADFVINTAM 85 (171)
T ss_dssp ----TTCSEEEECCC
T ss_pred ----cCCCeEeeecc
Confidence 67887776643
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.07 E-value=0.3 Score=46.93 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=70.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEe-----------CChHHHHHHHhcCCCEE---EecCCCHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD-----------LNPSVVKESRKLGFPIL---YGDASRPA 468 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid-----------~d~~~~~~~~~~~~~vi---~GD~~~~~ 468 (663)
.++++|=|+|++|+.+|+.|. +.|.+|+.|+ .|.+......+..-.+. .....+.+
T Consensus 36 gktvaIqGfGnVG~~~A~~L~----------e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~ 105 (293)
T d1hwxa1 36 DKTFAVQGFGNVGLHSMRYLH----------RFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGS 105 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSC
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcc
Confidence 357999999999999999998 7899988886 45555555544211110 01223344
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE-ec---ChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR-AQ---DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~-~~---~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.|. .++|.++-+.-.+..|- ..++++. +++|+. +| +++..+.|++-|+ ++.|..
T Consensus 106 ~~~----~~~DIliPaA~~~~I~~---~~a~~l~--ak~I~EgAN~P~t~eA~~~L~~~gI--~viPD~ 163 (293)
T d1hwxa1 106 ILE----VDCDILIPAASEKQLTK---SNAPRVK--AKIIAEGANGPTTPQADKIFLERNI--MVIPDL 163 (293)
T ss_dssp GGG----CCCSEEEECSSSSCBCT---TTGGGCC--CSEEECCSSSCBCHHHHHHHHHTTC--EEECHH
T ss_pred ccc----CCccEEeeccccccccH---HHHHHHh--hCEEeccCCCCCCcchHHHHHHCCC--EEeChh
Confidence 443 37897776665543332 3555664 456664 34 3567788888887 667873
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.92 E-value=1.5 Score=38.15 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=52.3
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchH
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAE 534 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~ 534 (663)
+++.++++.-+.|++. +.-..-..+++.+|..+++ ++++.-.+++..+..++.|+|++++++.+
T Consensus 20 ~~~~~~~~~g~~VlI~-G~G~iG~~~~~~ak~~g~~-~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~ 83 (174)
T d1f8fa2 20 CINALKVTPASSFVTW-GAGAVGLSALLAAKVCGAS-IIIAVDIVESRLELAKQLGATHVINSKTQ 83 (174)
T ss_dssp HHTTTCCCTTCEEEEE-SCSHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHTCSEEEETTTS
T ss_pred HHHhhCCCCCCEEEEe-CCCHHHhhhhhcccccccc-eeeeeccHHHHHHHHHHcCCeEEEeCCCc
Confidence 4677888888877665 4456778889999999876 77787888899999999999999998753
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.86 E-value=2.4 Score=38.12 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=65.6
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
++=+|+|.=...+...-. .++..++.+|.+++.+..+.+ .+..+++||+.+ .+....-...
T Consensus 35 vLdIGcG~G~~~~~lA~~----------~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~--l~~~~~~~~~ 102 (204)
T d1yzha1 35 HVEVGSGKGAFVSGMAKQ----------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD--LTDYFEDGEI 102 (204)
T ss_dssp EEEESCTTSHHHHHHHHH----------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC--GGGTSCTTCC
T ss_pred EEEEeccCCHHHHHHHHH----------CCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHH--HhhhccCCce
Confidence 455676654333333222 567899999999988766542 357789999986 3455566678
Q ss_pred cEEEEEcCCH---H--------HHHHHHHHHHHhCCCCcEEEEecChhhH
Q 006034 479 KAVMIMYTDK---K--------RTIEAVQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 479 ~~vv~~~~dd---~--------~n~~~~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
|.+.+.-+|. . ..-.....+|.+.|+-.+....+++++.
T Consensus 103 ~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~ 152 (204)
T d1yzha1 103 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLF 152 (204)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHH
T ss_pred ehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHH
Confidence 8888887763 1 1334556677788886777766666653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.84 E-value=0.22 Score=48.19 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=31.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV 449 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~ 449 (663)
.++|+|.|..|..+|+.|. +.|++|+|+|.++..-
T Consensus 3 dv~IIGaG~sGl~~A~~L~----------~~g~~V~iiEk~~~iG 37 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELK----------KLNKKVLVIEKRNHIG 37 (298)
T ss_dssp EEEEECCSHHHHHHHHHHG----------GGTCCEEEECSSSSSS
T ss_pred cEEEECCcHHHHHHHHHHH----------hCCCcEEEEECCCCcc
Confidence 4899999999999999997 7899999999988653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.82 E-value=0.54 Score=44.25 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCCc-EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEe-CChHHHHHH----HhcC--CCEEEecCCCHHHHHh
Q 006034 402 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFD-LNPSVVKES----RKLG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~-viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid-~d~~~~~~~----~~~~--~~vi~GD~~~~~~L~~ 472 (663)
+.++ ++|.|. +-+|+.+++.|. +.|++|++.+ ++++..+.. .+.+ ...+.+|.+|++-.++
T Consensus 4 L~GK~alITGas~GIG~aia~~la----------~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~ 73 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELG----------RRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVA 73 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHH
Confidence 4544 455565 459999999998 8999999864 555554443 3344 4567899999776654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=84.74 E-value=0.63 Score=46.19 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=51.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC------------ChHHHHH-HH----------hcCCCEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL------------NPSVVKE-SR----------KLGFPIL 460 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~------------d~~~~~~-~~----------~~~~~vi 460 (663)
+|+|.|. |-+|+.++++|.+ +.|++|+++|. ..+.... .. +....++
T Consensus 4 KVLITG~tGfIGs~lv~~LL~---------~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (383)
T d1gy8a_ 4 RVLVCGGAGYIGSHFVRALLR---------DTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE 74 (383)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------HCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE
T ss_pred EEEEeCCCcHHHHHHHHHHHH---------hCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEE
Confidence 4888875 8899999999962 57999999984 1122111 11 1346789
Q ss_pred EecCCCHHHHHhc--CCCCCcEEEEEc
Q 006034 461 YGDASRPAVLLSA--GITSPKAVMIMY 485 (663)
Q Consensus 461 ~GD~~~~~~L~~a--~i~~a~~vv~~~ 485 (663)
.||.+|++.++++ ....+|.|+=+.
T Consensus 75 ~~Di~d~~~l~~~~~~~~~~d~ViH~A 101 (383)
T d1gy8a_ 75 VGDVRNEDFLNGVFTRHGPIDAVVHMC 101 (383)
T ss_dssp ESCTTCHHHHHHHHHHSCCCCEEEECC
T ss_pred ECcccCHHHhhhhhhccceeehhhccc
Confidence 9999999988775 556778777554
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=0.79 Score=43.88 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=52.8
Q ss_pred cCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHH
Q 006034 400 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPA 468 (663)
Q Consensus 400 ~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~ 468 (663)
++..++++|+|+|.-+ +++++.+ .....+++++|.|++.++.+++ .+..++.+|+. +
T Consensus 76 ~~~pk~vLiiGgG~G~--~~~~~l~--------~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~--~ 143 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGG--VLREVVK--------HPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF--E 143 (285)
T ss_dssp SSSCCEEEEEECTTSH--HHHHHTT--------CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--H
T ss_pred CcCcCeEEEeCCCchH--HHHHHHH--------cCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHH--H
Confidence 3466799999999754 3344431 2346789999999999877653 35788888876 4
Q ss_pred HHHhcCCCCCcEEEEEcCCH
Q 006034 469 VLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd 488 (663)
.|++ .-++.|.|++-..|+
T Consensus 144 ~l~~-~~~~yDvIi~D~~~p 162 (285)
T d2o07a1 144 FMKQ-NQDAFDVIITDSSDP 162 (285)
T ss_dssp HHHT-CSSCEEEEEEECC--
T ss_pred HHhc-CCCCCCEEEEcCCCC
Confidence 5655 346899988887764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=84.55 E-value=0.25 Score=46.46 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=30.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
+|+|+|.|.-|...|..|. +.|++|+++|+++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~----------~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLR----------SRGTDAVLLESSAR 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHH----------TTTCCEEEECSSSS
T ss_pred eEEEECCCHHHHHHHHHHH----------hCCCCEEEEecCCC
Confidence 4899999999999999998 78999999999765
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.49 E-value=0.17 Score=51.06 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=42.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a 473 (663)
-|||+|.|+-|...|..|.+ ++.. .+.|.+|+++|+.++. |.+++.|...++..|++.
T Consensus 34 DViIVGgGPAGlsaA~~LA~-l~~~---~~~Gl~VlllEK~~~p-------G~k~~~Ggvl~~~~l~~l 91 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQ-LAAQ---HEKDLRVCLVEKAAHI-------GAHTLSGACLDPRAFEEL 91 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHH-HHHH---TTCCCCEEEECSSSST-------TTTCCCCCEECTHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHh-hhhh---hcCCCEEEEEcCCCCC-------CCCccccccccHHHHHHH
Confidence 59999999999999998861 0000 0389999999998764 566767776777776664
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.47 E-value=0.77 Score=40.52 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=51.3
Q ss_pred HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchH
Q 006034 471 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAE 534 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~ 534 (663)
+.++++.=|.|++.-..-..-...+..+|..+ +++|+.+.++++.+.+++.|+|++|+++.+
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~ 84 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIGFDAAFNYKTV 84 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTSC
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhhhhhhhcccccc
Confidence 46788888888776666667777888899887 479999999999999999999999998753
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.47 E-value=1 Score=42.78 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=51.9
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------------cCCCEEEec
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------------LGFPILYGD 463 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------------~~~~vi~GD 463 (663)
+..++|+|+|+|.-+.. -+.++ ....++.+||.||+.++.+++ ...+++.+|
T Consensus 71 ~~p~~vLiiG~G~G~~~-~~~l~----------~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~D 139 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTV-REVLQ----------HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGD 139 (276)
T ss_dssp SCCCEEEEEECTTSHHH-HHHTT----------SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESC
T ss_pred CCCceEEEecCCchHHH-HHHHH----------hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEECh
Confidence 45679999999976443 33454 344579999999999887653 235789999
Q ss_pred CCCHHHHHhcCCCCCcEEEEEcCCH
Q 006034 464 ASRPAVLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 464 ~~~~~~L~~a~i~~a~~vv~~~~dd 488 (663)
+. +.+++ + ++.|.|++-..++
T Consensus 140 a~--~~l~~-~-~~yDvIi~D~~~~ 160 (276)
T d1mjfa_ 140 GF--EFIKN-N-RGFDVIIADSTDP 160 (276)
T ss_dssp HH--HHHHH-C-CCEEEEEEECCCC
T ss_pred HH--HHHhc-c-CCCCEEEEeCCCC
Confidence 85 45555 3 6899888866653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.30 E-value=1.6 Score=37.75 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=52.4
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.+++++++.-|.+++.-..-..-...++.+|..+.. ++++...+++..+.+++.|+|+++++..
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~-~V~~~~~~~~~~~~~~~~Ga~~~i~~~~ 82 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASM 82 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccc-cccccccchhhHHHHHHcCCceeeccCC
Confidence 467889988887766664445667788889988765 8999999999999999999999998774
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=84.13 E-value=0.44 Score=41.42 Aligned_cols=97 Identities=15% Similarity=0.252 Sum_probs=59.1
Q ss_pred CcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEEEE-eCChHH--HHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 404 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAF-DLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~--~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
=+|-|+|.|.+|+. +.+.|++ .+..+++.+ ++|++. .+.+++.+.++.+++. ++.++....++.|
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~---------~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~--d~l~~~~~~~~iD 73 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRN---------AKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGV--EGLIKLPEFADID 73 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH---------CSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHH--HHHHHSGGGGGEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhh---------CCcceEEEEEecchhccchhhhhhcCCcccccce--eeeeecccccccC
Confidence 37999999999986 5577752 455566555 777653 3456667777765432 3455555667889
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
.|+.+|+.... ..-....|.....+.++-...
T Consensus 74 iVf~ATpag~h-~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 74 FVFDATSASAH-VQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp EEEECSCHHHH-HHHHHHHHHHCTTCEEEECST
T ss_pred EEEEcCCchhH-HHhHHHHHHHHcCCEEEEccc
Confidence 99999886432 222223444443445554443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.00 E-value=0.26 Score=44.78 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=30.0
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
|||+|.|--|...|..|. +.|++|.|+|+++.
T Consensus 8 viViGaG~~Gl~~A~~La----------~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLS----------VDGKKVLHIDKQDH 39 (297)
T ss_dssp EEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHH----------HCCCCEEEEcCCCC
Confidence 899999999999999998 78999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=83.85 E-value=1.4 Score=38.70 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHH
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKL 543 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~ 543 (663)
.++.=|.|++. +.-..=..++..+|..+++ +|++...+++..+..++.|+|++++++........+.+
T Consensus 25 ~~~~G~~VlV~-GaG~iG~~~~~~ak~~Ga~-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 25 ESFAGKTVVIQ-GAGPLGLFGVVIARSLGAE-NVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAI 92 (182)
T ss_dssp SCCBTCEEEEE-CCSHHHHHHHHHHHHTTBS-EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEE-CCCccchhheecccccccc-cccccccccccccccccccceEEEeccccchHHHHHHH
Confidence 44444555444 3335677889999999876 89999999999999999999999999865444444433
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=83.81 E-value=1.1 Score=43.10 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=51.4
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~~ 469 (663)
+..++|+|+|+|.-+. ++++.+ .....+++++|.||+.++.+++ .+.+++.+|+. +.
T Consensus 88 ~~pk~VLiiGgG~G~~--~r~~l~--------~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~--~~ 155 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGT--LREVLK--------HDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGA--EY 155 (295)
T ss_dssp SSCCEEEEEECTTCHH--HHHHTT--------STTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HH
T ss_pred CCCceEEEecCCchHH--HHHHHh--------cCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHH--HH
Confidence 4568999999998643 444431 2345679999999998776653 34688999985 45
Q ss_pred HHhcCCCCCcEEEEEcCCH
Q 006034 470 LLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd 488 (663)
+++.. ++.|.+++-..|.
T Consensus 156 l~~~~-~~yDvIi~D~~dp 173 (295)
T d1inla_ 156 VRKFK-NEFDVIIIDSTDP 173 (295)
T ss_dssp GGGCS-SCEEEEEEEC---
T ss_pred HhcCC-CCCCEEEEcCCCC
Confidence 66644 6799888876653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=83.75 E-value=2.1 Score=36.18 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=55.6
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC--hHHHH----HHHh-----cCCCEEEecCCCHHHHHh
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN--PSVVK----ESRK-----LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d--~~~~~----~~~~-----~~~~vi~GD~~~~~~L~~ 472 (663)
+|.|+| .|++|+.+|-.|.. +..-.+++++|.+ ++..+ ++.+ ....+..+| .+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~--------~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~---- 66 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIAL--------RDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YE---- 66 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHH--------TTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GG----
T ss_pred eEEEECCCCcHHHHHHHHHHh--------CCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HH----
Confidence 588999 59999999998862 1233469999964 33322 2222 112333332 22
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.+.+||.+|++.+. | ..|.. ++..+++.+|+ -++..+.||-+
T Consensus 67 -~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~-~i~ivvtNPvD 123 (142)
T d1o6za1 67 -DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTTSNPVD 123 (142)
T ss_dssp -GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEECCSSHH
T ss_pred -HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCC-ceEEEecChHH
Confidence 24689988777551 1 23544 33445556777 46666666654
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=83.71 E-value=0.3 Score=40.22 Aligned_cols=96 Identities=8% Similarity=0.029 Sum_probs=64.1
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhc-CCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEE
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSA-GITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a-~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.++.+||.|+...+.+. +.|+.+..-+ +-.+.++.. .-...|.+++-..=. ..-...+..+|+.+++++++..
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~~ir~~~~~~pii~l 81 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHP-SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLIL 81 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCeEEEC-CHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 57899999998865544 5788877543 224455443 334678887766542 3466788889998888887776
Q ss_pred ecChhhHHHHHHcCCCeEEcCch
Q 006034 511 AQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 511 ~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
....+......+.|+|++.-|-.
T Consensus 82 t~~~~~~~~~~~~~~dyl~KP~~ 104 (118)
T d2b4aa1 82 TTGRHELIESSEHNLSYLQKPFA 104 (118)
T ss_dssp ESCC--CCCCSSSCEEEEESSCC
T ss_pred ECCccHHHHHhhcCCCEEECCCC
Confidence 65544444566778888877753
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.58 E-value=4.5 Score=33.36 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=62.6
Q ss_pred CCCCCEEEEeCChHHHHHH----HhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHh-----CC
Q 006034 434 TVGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLA-----FP 503 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~----~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~-----~~ 503 (663)
-.|.+|.+||.|+...+.+ .+.|+.+..-+- -.+.|+... ++.|.+++-.+=. ..-...+...|+. .+
T Consensus 5 ~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~-g~eal~~l~-~~~dlillD~~mP~~dG~el~~~ir~~~~~~~~~ 82 (134)
T d1dcfa_ 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSS-NEECLRVVS-HEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (134)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS-HHHHHHHCC-TTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECC-HHHHHHHhh-cCCCeEEEEeccCCCchHHHHHHHHHhcccccCC
Confidence 4688999999998875443 446887765322 245666554 5788776655422 2335667777754 23
Q ss_pred CCcEEEEe--cChhhHHHHHHcCCCeEEcCc
Q 006034 504 AIPIYARA--QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 504 ~~~iia~~--~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.++||+.. .+++......++|+|.++.-.
T Consensus 83 ~~~ii~lT~~~~~~~~~~~~~~G~~~~l~KP 113 (134)
T d1dcfa_ 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKP 113 (134)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESS
T ss_pred CCeEEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 34566544 356677788899999877654
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.31 E-value=0.24 Score=43.51 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
..++|+|+|.|..|-.+|..|. +.+.++.+++.+++
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~----------~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLR----------ASGWEGNIRLVGDA 37 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSC
T ss_pred CCCCEEEECCcHHHHHHHHHHH----------HcCCceEEEEecCc
Confidence 3578999999999999999998 78888877766554
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=83.30 E-value=1.5 Score=36.21 Aligned_cols=94 Identities=20% Similarity=0.151 Sum_probs=66.1
Q ss_pred CEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC-HHHHHHHHHHHHHhCCCCcEEEEe-
Q 006034 438 PFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARA- 511 (663)
Q Consensus 438 ~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d-d~~n~~~~~~~r~~~~~~~iia~~- 511 (663)
+|.+||.|+...+.+. +.|+.+...+ +-.+.|+...-.+.|.+++-..= +..-...+...|+..|..+++...
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~~~~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~~ii~lt~ 82 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRSAGFEVETFD-CASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 82 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEES-SHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccccc-cHHHHHHHHHhcCCCEeehhhhcccchhHHHHHHHHhhCCCCeEEEEEE
Confidence 6889999988755544 4678877654 55678887777888988776642 233456677888888887765543
Q ss_pred -cChhhHHHHHHcCCCeEEcCc
Q 006034 512 -QDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 512 -~~~~~~~~l~~~Gad~vi~p~ 532 (663)
.+.+......+.||+..+.-.
T Consensus 83 ~~~~~~~~~a~~~Ga~dyl~KP 104 (128)
T d1yioa2 83 HGDIPMTVRAMKAGAIEFLPKP 104 (128)
T ss_dssp CTTSCCCHHHHHTTEEEEEESS
T ss_pred ECCHHHHHHHHHCCCCEEEECC
Confidence 345667778899999876654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.28 E-value=0.63 Score=44.13 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=44.0
Q ss_pred CcEEEE-c-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHH
Q 006034 404 EPVVIV-G-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~-G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~ 471 (663)
+||.|+ | .+-+|+.+|+.|.+ +.|.+|++.++|+++.+.+.+ . ...++..|.+|++-.+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~---------~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~ 69 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCR---------LFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIR 69 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHH---------HSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHH---------hCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHH
Confidence 477555 4 46689999999962 358999999999998766543 2 4567888999887654
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.28 E-value=1.7 Score=38.85 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=43.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+++|+|.|. |-+|+.++++|. +.++.+.++...++... ..+-+..+..|..-+.+.-....|.+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~----------~~~~~~~v~~~~r~~~~-----~~~~~~~~~~d~~~~~~~~~~~~d~v 66 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRIL----------SEPTLAKVIAPARKALA-----EHPRLDNPVGPLAELLPQLDGSIDTA 66 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH----------HCTTCCEEECCBSSCCC-----CCTTEECCBSCHHHHGGGCCSCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------hCCCeEEEEEEeCCchh-----hcccccccccchhhhhhccccchhee
Confidence 468999998 999999999997 56665445444332211 22234455555555555445567888
Q ss_pred EEEcC
Q 006034 482 MIMYT 486 (663)
Q Consensus 482 v~~~~ 486 (663)
+.+.+
T Consensus 67 i~~~g 71 (212)
T d2a35a1 67 FCCLG 71 (212)
T ss_dssp EECCC
T ss_pred eeeee
Confidence 87653
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.26 E-value=2.6 Score=36.64 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=42.7
Q ss_pred cEEEEcCCcch--HHHHHHhcccccCCCCCCCC---CCCEEEEeCChHH--HHHHH--------hcCCCEEEecCCCHHH
Q 006034 405 PVVIVGFGQMG--QVLANLLSAPLASGSDGNTV---GWPFVAFDLNPSV--VKESR--------KLGFPILYGDASRPAV 469 (663)
Q Consensus 405 ~viI~G~g~~g--~~la~~L~~~~~~~~~~~~~---~~~vvvid~d~~~--~~~~~--------~~~~~vi~GD~~~~~~ 469 (663)
++.|+|.|..| ..++..+.+ .. ..+++.+|.|+++ .+.+. +.+.++-....+|..-
T Consensus 3 KI~iIGaGs~~~~~~~~~l~~~---------~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~ 73 (169)
T d1s6ya1 3 KIATIGGGSSYTPELVEGLIKR---------YHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRR 73 (169)
T ss_dssp EEEEETTTCTTHHHHHHHHHHT---------TTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred EEEEECCChhhHHHHHHHHHHh---------ccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchh
Confidence 58999999776 445555541 22 2589999998865 22221 2355555555565421
Q ss_pred HHhcCCCCCcEEEEEcC
Q 006034 470 LLSAGITSPKAVMIMYT 486 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~ 486 (663)
.+++||.||++..
T Consensus 74 ----al~gaDvVv~ta~ 86 (169)
T d1s6ya1 74 ----ALDGADFVTTQFR 86 (169)
T ss_dssp ----HHTTCSEEEECCC
T ss_pred ----hcCCCCEEEEccc
Confidence 2468898888775
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.10 E-value=1.4 Score=38.20 Aligned_cols=63 Identities=17% Similarity=0.019 Sum_probs=49.8
Q ss_pred HHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 468 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
..+++++++.-|.+++.-. -..=..+++.+|..+. ++|+...+++..+..+++|+|+++++..
T Consensus 18 ~al~~~~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lGa~~~i~~~~ 80 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMGADHYIATLE 80 (168)
T ss_dssp HHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHTCSEEEEGGG
T ss_pred HHHHHhCcCCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccCCcEEeeccc
Confidence 4577889987787766533 3566778889999874 6888888888999999999999998764
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=82.86 E-value=0.24 Score=45.01 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=54.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|+ .-|.+|.+.|+.+.... ...... .+-++.++ ++|.++
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~----------~fg~~v~~~d~~~~~~~---~~~~~~----~~l~~l~~-----~~D~v~ 102 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFK----------GFGAKVIAYDPYPMKGD---HPDFDY----VSLEDLFK-----QSDVID 102 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCSSC---CTTCEE----CCHHHHHH-----HCSEEE
T ss_pred ceeeeeeeccccccccccccc----------ccceeeeccCCccchhh---hcchhH----HHHHHHHH-----hcccce
Confidence 467999999999999999997 78999999998655311 111111 12234444 468777
Q ss_pred EEcCC--HHHHHHHHHHHHHhCCCCc
Q 006034 483 IMYTD--KKRTIEAVQRLRLAFPAIP 506 (663)
Q Consensus 483 ~~~~d--d~~n~~~~~~~r~~~~~~~ 506 (663)
+..+- ...|+.-....+.+.++..
T Consensus 103 ~~~plt~~T~~li~~~~l~~mk~~a~ 128 (199)
T d1dxya1 103 LHVPGIEQNTHIINEAAFNLMKPGAI 128 (199)
T ss_dssp ECCCCCGGGTTSBCHHHHHHSCTTEE
T ss_pred eeecccccccccccHHHhhccCCceE
Confidence 76554 3455555667777776633
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.79 E-value=0.91 Score=40.11 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=48.3
Q ss_pred HHhcCCCCCc-EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCc
Q 006034 470 LLSAGITSPK-AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 470 L~~a~i~~a~-~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~ 532 (663)
|++.+....+ .+++.-..--.=..+++.||.++ .++|+.+.+++..+.+++.|+|++++.+
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~G--a~Via~~~~~~k~~~~~~lGad~vi~~~ 84 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSLGASRVLPRD 84 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTEEEEEEGG
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcC--CCeEEEecchhHHHHHHhhccccccccc
Confidence 5666766544 56665555566778889999997 4699999999999999999999999876
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=82.60 E-value=0.31 Score=46.05 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.5
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
|+|+|.|-.|..+|..|. ++|++|+++|+++.
T Consensus 6 vvIIGaGi~Gls~A~~La----------~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLA----------KQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEECCSHHHHHHHHHHH----------HTTCCEEEECSSCS
T ss_pred EEEECcCHHHHHHHHHHH----------HCCCcEEEEeCCCC
Confidence 899999999999999998 78999999998643
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=82.58 E-value=0.29 Score=45.35 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=31.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK 450 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~ 450 (663)
.|+|+|.|..|...|..|. +.|++|+++|++++.-.
T Consensus 4 DViIIGaG~aGl~aA~~la----------~~G~~V~liEk~~~~g~ 39 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAA----------EEGANVLLLDKGNKLGR 39 (251)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSSSCH
T ss_pred CEEEECcCHHHHHHHHHHH----------HCCCcEEEEeCCCCCCc
Confidence 4899999999999999998 78999999999876433
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=82.37 E-value=0.34 Score=43.76 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=51.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~~v 481 (663)
.+++-|+|+|++|+.+++.+. ..|.+|...|+..+...... .+... ..+ ++++ +++|.+
T Consensus 49 gktvgIiG~G~IG~~va~~l~----------~fg~~v~~~d~~~~~~~~~~-~~~~~----~~~l~~ll-----~~sD~i 108 (193)
T d1mx3a1 49 GETLGIIGLGRVGQAVALRAK----------AFGFNVLFYDPYLSDGVERA-LGLQR----VSTLQDLL-----FHSDCV 108 (193)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECTTSCTTHHHH-HTCEE----CSSHHHHH-----HHCSEE
T ss_pred CceEEEeccccccccceeeee----------ccccceeeccCcccccchhh-hcccc----ccchhhcc-----ccCCEE
Confidence 458999999999999999997 88999999998655422111 12111 122 3344 356777
Q ss_pred EEEcCCH--HHHHHHHHHHHHhCCC
Q 006034 482 MIMYTDK--KRTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd--~~n~~~~~~~r~~~~~ 504 (663)
++..+-. ..++.-....+.+.++
T Consensus 109 ~~~~plt~~T~~li~~~~l~~mk~~ 133 (193)
T d1mx3a1 109 TLHCGLNEHNHHLINDFTVKQMRQG 133 (193)
T ss_dssp EECCCCCTTCTTSBSHHHHTTSCTT
T ss_pred EEeecccccchhhhhHHHHhccCCC
Confidence 7766533 3444444445555555
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.27 E-value=1.8 Score=37.76 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=49.1
Q ss_pred HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 471 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+.++++.-|.|++.-.....-..++..||..++ ++++.+.+++..+.+++.|+|++++.+.
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~~~~l~~~Ga~~vi~~~~ 79 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSRLGVEYVGDSRS 79 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccc--cceeeecccccccccccccccccccCCc
Confidence 445677778787765556777888999999974 6788888888999999999999998654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.17 E-value=2 Score=37.23 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=49.9
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+.+.++++.=|.|++.-.. -.=..++..++..++. +|++...+++..+..++.|||++|++..
T Consensus 20 ~~~~a~~k~g~~VlI~G~G-g~g~~~~~~~~~~g~~-~Vi~~~~~~~rl~~a~~~GAd~~in~~~ 82 (175)
T d1cdoa2 20 AVNTAKVEPGSTCAVFGLG-AVGLAAVMGCHSAGAK-RIIAVDLNPDKFEKAKVFGATDFVNPND 82 (175)
T ss_dssp HHTTTCCCTTCEEEEECCS-HHHHHHHHHHHHTTCS-EEEEECSCGGGHHHHHHTTCCEEECGGG
T ss_pred HHHhhCCCCCCEEEEEecC-CccchHHHHHHHHhhc-hheeecchHHHHHHHHHcCCcEEEcCCC
Confidence 3467889888877665443 3455677778888765 8999999999999999999999999874
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=81.93 E-value=0.34 Score=47.59 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=49.2
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCC--EEEEeC-----ChHHHHHHHhcCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWP--FVAFDL-----NPSVVKESRKLGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~--vvvid~-----d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i 475 (663)
.+|+|.| -|-+|+.+++.|. +.|++ ++++|. +.++.+.....+...+.||.+|.+.+.++-
T Consensus 3 mkILVTGgtGfIGs~lv~~L~----------~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~- 71 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVY----------NNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLA- 71 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHH-
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHH-
Confidence 4699998 5999999999997 56666 555552 223333344456788999999999998874
Q ss_pred CCCcEEEEE
Q 006034 476 TSPKAVMIM 484 (663)
Q Consensus 476 ~~a~~vv~~ 484 (663)
...+.++..
T Consensus 72 ~~~~~v~~~ 80 (346)
T d1oc2a_ 72 AKADAIVHY 80 (346)
T ss_dssp TTCSEEEEC
T ss_pred hhhhhhhhh
Confidence 455555444
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=81.80 E-value=2.6 Score=35.16 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=61.4
Q ss_pred CCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHH-HHHHHHHHHHHh--CCCCcEEE
Q 006034 437 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLA--FPAIPIYA 509 (663)
Q Consensus 437 ~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~-~n~~~~~~~r~~--~~~~~iia 509 (663)
.+|.+||.|+...+.++ +.|+.+...+ +-.+.++.+.-.+.|.+++-..-.. .=...+...|+. .++++|+.
T Consensus 2 arILiVDD~~~~~~~l~~~L~~~g~~v~~a~-~~~eal~~~~~~~~dlil~D~~~p~~~G~~~~~~ir~~~~~~~~piI~ 80 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAM-DGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVL 80 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEc-cchhhhhhhhcccceeeeeeccccCCCchHHHHHhhhcccccCCCEEE
Confidence 35788888888765544 4678776543 2334555555567888777654432 234466667763 45677776
Q ss_pred Ee--cChhhHHHHHHcCCCeEEcCch
Q 006034 510 RA--QDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 510 ~~--~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.. .+++......++|+|..+.-..
T Consensus 81 lt~~~~~~~~~~a~~~Ga~dyl~KP~ 106 (139)
T d1w25a1 81 ITALDGRGDRIQGLESGASDFLTKPI 106 (139)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCC
Confidence 65 4556667788899998776654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.75 E-value=2.1 Score=37.26 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=51.4
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
+++.++++.=|.|++. +-=-.=+.+++.+|..++. +|++.-.+++..+..++.|+|+++++..
T Consensus 19 ~~~~a~~~~G~~VlV~-GaGgvGl~a~~~ak~~G~~-~Vi~~d~~~~kl~~a~~lGa~~~i~~~~ 81 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGAS-RIIGVGTHKDKFPKAIELGATECLNPKD 81 (174)
T ss_dssp HHTTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCS-EEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred HHHhhCCCCCCEEEEE-CCCchhHHHHHHHHHcCCc-eeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence 4567888888876655 3446778889999999876 7888888999999999999999998863
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=81.55 E-value=2 Score=38.38 Aligned_cols=63 Identities=19% Similarity=0.105 Sum_probs=52.5
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.++.++++.=|.|++. +.-..-+.++..+|..+.. +|++-..+++..+..++.|+|+++++..
T Consensus 17 a~~~a~v~~G~tVlV~-GaG~vGl~a~~~ak~~ga~-~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~ 79 (195)
T d1kola2 17 GAVTAGVGPGSTVYVA-GAGPVGLAAAASARLLGAA-VVIVGDLNPARLAHAKAQGFEIADLSLD 79 (195)
T ss_dssp HHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCS-EEEEEESCHHHHHHHHHTTCEEEETTSS
T ss_pred HHHHhCCCCCCEEEEE-CcCHHHHHHHHHHHhhccc-ceeeecccchhhHhhhhccccEEEeCCC
Confidence 4678999988887665 4446678888899988865 8999889999999999999999999875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.50 E-value=0.31 Score=45.63 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS 447 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~ 447 (663)
+|+|+|.|..|..+|..|. +.|+ +|+|+|++++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~----------~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALH----------QAGIGKVTLLESSSE 36 (288)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCSEEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCCeEEEEeCCCC
Confidence 5999999999999999998 7885 8999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=81.38 E-value=2.1 Score=36.87 Aligned_cols=63 Identities=11% Similarity=-0.062 Sum_probs=50.6
Q ss_pred HHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCch
Q 006034 468 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~ 533 (663)
..|++++++.=|.|++. +--..-...++.+|..+. ++|+...+++..+..++.|+|+++++..
T Consensus 21 ~al~~~~~~~G~~VlI~-GaG~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGad~~i~~~~ 83 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGADEVVNSRN 83 (168)
T ss_dssp HHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTCSEEEETTC
T ss_pred HHHHHhCCCCCCEEEEe-ccchHHHHHHHHhhcccc--cchhhccchhHHHHHhccCCcEEEECch
Confidence 45788999988877665 444677888999999874 5667777888889999999999999875
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.26 E-value=0.11 Score=50.78 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL 444 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~ 444 (663)
+++|+|.|. |-+|+.+++.|. ++|++|+++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~----------~~g~~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLM----------MDGHEVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeC
Confidence 467999986 889999999997 78999999985
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=81.19 E-value=1.9 Score=37.79 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--ecCCC-HHHHHhcCCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GDASR-PAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--GD~~~-~~~L~~a~i~~ 477 (663)
..++|+|.|. |.+|+..++..+ ..|.+|+.++.++++.+.+++.|...+. -|... +++++..+-+.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak----------~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAK----------LKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDG 98 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred CCCEEEEEeCCCchhHHHHHHHH----------ccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence 3457888787 668988888776 7899999999999999999998866543 22222 34566778888
Q ss_pred CcEEEEEcCC
Q 006034 478 PKAVMIMYTD 487 (663)
Q Consensus 478 a~~vv~~~~d 487 (663)
+|.++=+.+.
T Consensus 99 vd~v~D~vG~ 108 (182)
T d1v3va2 99 YDCYFDNVGG 108 (182)
T ss_dssp EEEEEESSCH
T ss_pred CceeEEecCc
Confidence 9988777764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=81.14 E-value=3.3 Score=37.18 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=55.8
Q ss_pred CCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH---HH--------HHHHH
Q 006034 434 TVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK---KR--------TIEAV 495 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd---~~--------n~~~~ 495 (663)
.++..++.||.++..+..+.+ .+..+++||+.+ .++...-...|.+.+..++. .. .-.+.
T Consensus 51 ~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~--l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~ 128 (204)
T d2fcaa1 51 NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT--LTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLK 128 (204)
T ss_dssp CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG--HHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHH
T ss_pred CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhh--hhcccCchhhhccccccccccchhhhcchhhhHHHHHH
Confidence 577899999999998766543 346778999874 34445556778887777662 11 23455
Q ss_pred HHHHHhCCCCcEEEEecChhhHHH
Q 006034 496 QRLRLAFPAIPIYARAQDMMHLLD 519 (663)
Q Consensus 496 ~~~r~~~~~~~iia~~~~~~~~~~ 519 (663)
...|.+.|+-.+....+++.+.+.
T Consensus 129 ~~~r~LkpgG~l~i~TD~~~y~~~ 152 (204)
T d2fcaa1 129 KYEEVMGKGGSIHFKTDNRGLFEY 152 (204)
T ss_dssp HHHHHHTTSCEEEEEESCHHHHHH
T ss_pred HHHHhCCCCcEEEEEECChHHHHH
Confidence 666778887666666666655443
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=80.81 E-value=0.43 Score=46.40 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=30.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
-|+|+|.|..|..+|..|.+. .....|++|+++|+++..
T Consensus 9 DV~IvGaG~aGl~lA~~La~~-----~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEY-----VRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----HHHSTTCCEEEECSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHhc-----ccccCCCcEEEEcCCCCC
Confidence 499999999999999999410 000579999999988754
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.54 E-value=2.6 Score=33.96 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=59.1
Q ss_pred CEEEEeCChHHHHHH----HhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEec
Q 006034 438 PFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 438 ~vvvid~d~~~~~~~----~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+|.+||.|+...+.+ ++.|+.+...+ +-.+.++.+.-.+.|.+++-..-. ..-...+...|+. ++++++....
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~g~~v~~a~-~~~eal~~~~~~~~dlillD~~mp~~~G~~~~~~i~~~-~~~pvI~lt~ 79 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKEGYEVVTAF-NGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLSA 79 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHTT-CCCCEEEEES
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHhcCCCEEEeccccCCCCccHHHHHHHhC-CCCCEEEEec
Confidence 578888888875544 34778776542 224556555556788776654422 3345667777764 5778776554
Q ss_pred --ChhhHHHHHHcCCCeEEcCc
Q 006034 513 --DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 513 --~~~~~~~l~~~Gad~vi~p~ 532 (663)
+.++.....++|+|..+.-.
T Consensus 80 ~~~~~~~~~a~~~Ga~d~l~KP 101 (117)
T d2a9pa1 80 KDSEFDKVIGLELGADDYVTKP 101 (117)
T ss_dssp CCSHHHHHHHHHHTCSEEEESS
T ss_pred CCCHHHHHHHHHcCCCEEEECC
Confidence 44555667789999866554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.25 E-value=1.4 Score=42.13 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=51.8
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~~ 469 (663)
+..++|+|+|+|.-+. ++++.+ .....+++++|.|++.++.+++ ....++.+|+. +.
T Consensus 79 ~~pk~VLiiGgG~G~~--~r~~l~--------~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~--~~ 146 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGV--LREVAR--------HASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV--AF 146 (290)
T ss_dssp SCCCEEEEETCSSSHH--HHHHTT--------CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH--HH
T ss_pred CCCcceEEecCCchHH--HHHHHh--------cccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHH--HH
Confidence 4567899999987543 344431 1233579999999999877654 34668888875 44
Q ss_pred HHhcCCCCCcEEEEEcCCH
Q 006034 470 LLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd 488 (663)
+++..=++.|.+++-..|+
T Consensus 147 l~~~~~~~yDvIi~D~~dp 165 (290)
T d1xj5a_ 147 LKNAAEGSYDAVIVDSSDP 165 (290)
T ss_dssp HHTSCTTCEEEEEECCCCT
T ss_pred HhhccccCccEEEEcCCCC
Confidence 5555446899888776663
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.22 E-value=1.2 Score=43.20 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=51.9
Q ss_pred cCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHH
Q 006034 400 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPA 468 (663)
Q Consensus 400 ~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~ 468 (663)
++..++|+|+|+|.-+. +.+.|+ .....++.++|.|++.++.+++ .+..++.+|+. +
T Consensus 104 ~~~pk~VLIiGgG~G~~-~rellk---------~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~--~ 171 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGI-LREVLK---------HESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF--E 171 (312)
T ss_dssp SSSCCEEEEESCTTSHH-HHHHTT---------CTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH--H
T ss_pred CCCCCeEEEeCCCchHH-HHHHHH---------cCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHH--H
Confidence 35667899999997543 324443 1234689999999999887764 23567888886 4
Q ss_pred HHHhcCCCCCcEEEEEcCCH
Q 006034 469 VLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd 488 (663)
.+++ .-++.|.||+-..|+
T Consensus 172 ~l~~-~~~~yDvII~D~~dp 190 (312)
T d2b2ca1 172 FLKN-HKNEFDVIITDSSDP 190 (312)
T ss_dssp HHHH-CTTCEEEEEECCC--
T ss_pred HHHh-CCCCCCEEEEcCCCC
Confidence 5665 447899888776654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=80.21 E-value=0.39 Score=46.45 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=33.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
.|+|||.|..|...|..|. +.|.+|+++|++++.-...
T Consensus 9 dV~IIGAG~sGl~~a~~L~----------~~G~~v~i~Ek~~~iGGtW 46 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLR----------ELGRSVHVIETAGDVGGVW 46 (298)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSSSCTHH
T ss_pred CEEEECccHHHHHHHHHHH----------hCCCCEEEEEcCCCccccc
Confidence 5999999999999999998 7899999999988754333
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=80.09 E-value=0.4 Score=44.76 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=33.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
.|+|+|.|.-|...|-.|. +.|.+|+++|++++.-++.
T Consensus 6 DViIIGaG~aGl~aA~~la----------~~G~~V~vlEk~~~~G~k~ 43 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLA----------KLGKSVTVFDNGKKIGRKI 43 (253)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSSSCHHH
T ss_pred cEEEECcCHHHHHHHHHHH----------HCCCcEEEEecCCCCCCce
Confidence 5999999999999999998 7899999999998764443
|