Citrus Sinensis ID: 006041

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660---
Protein Sequence
MITSSSFNLEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSSRIYASIVNGNGNGDNGKNRKEDEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Secondary Structure (PSIPRED)
cccccccccHHHHcccccEEcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEEEcccHHHHHHHHHcccccccccccccEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccHHHHHHHHHHHccHHHHHHHHcHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEHHHHHHHccEEEEccccccccccEEEEEEEccccHHHHcccccccEEEEEEEccccccccccccccHHccccEEEEEEEEcccEEEEEEEEEEcccHHHHHHHHccHHHHHHHccccccccccEEEEEEEEEccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccEEEEEccccEEEccccEEEEEEEEEEcccHHHHHHHHHcHHHHHHHcccccEEEEEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHcEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mitsssfnlEATLLTTTKLvhylplepppllhgikcctifsppplvnklthsSRIYASIVngngngdngknrkededeqrkvHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLadfvpnlacrsstttlsyevnviprlnfpaiFLERIIRSDLPVNLQALACRaersfgwnqkipmiknsfgelslpilaspsldfdgglpekgkaphgefnenivssnfgsvppsssdlnskwgvfgqvcrldrpcfvdevHLRRFDgllenggvhRCVVASITVKAPVSEVWNVMTAYEtlpeivpnLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFeqvegdfdsfqGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIyedlpsnlcaIRDYVekregdnslandsvettnhtqssddltqssdelgassssdnedlvdsetpnsfkqrprvpglqtNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYkhrkpkgywdnLENLEEEISRFQrswgmdpsfmpsrksfeRAGRYDIARALEKWGGLHEVSRLLSLklrhpnrrahiikdkkvdyvdpanlecegkipskpyvsqdTQKWAMKLkdldinwve
Flexible Loop (DISEMBL)
mitsssfnlEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSSRIYASivngngngdngknrkededeqrkvhcevevvswrerriKAEMLVNADVDSVWNALTDYERLADFVPNLACRSstttlsyevnvipRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDgllenggvHRCVVASItvkapvseVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVEttnhtqssddltqSSDELGassssdnedlvdsetpnsfkqrprvpglQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAItrmggfrrMASLMNLALAYKHRKPKGYWDNLENLEEEISRfqrswgmdpsFMPSRKSFERAGRYDIARALEKWGGLHEVSRLlslklrhpnrrahiikdkkvdyvDPANLecegkipskpyvsqdtqkWAMKLKDLDINWVE
Low Complexity Region (SEG)
MITSSSFNLEATLLTTTKLVHYlplepppllHGIKCCTIFSPPPLVNKLTHSSRIYASIVngngngdngknRKEDEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIvssnfgsvppsssDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTNHtqssddltqssdelgassssDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Disordered region (IsUnstruct)
*******NLEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSSRIYASIV*********************VHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILAS****************************************SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV**************************************************************QTNIEVLKAELLEFISKHGQEGFM******RKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW**************RAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINW**
Disordered Region (DISOPRED)
********LEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSSRIY*****************************VEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG**************************FDGGLP*******************************************************************CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV********************************************************************LKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGM**************GRYDIARALEKWGGLHEVSR***********************************************WAMKLKDLDINWVE
Disordered Region (DISEMBL)
MITSSSFNLEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSSRIYASIVNGNGNGDN**************HCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFG********LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDS*******************************************PRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Disordered Region (DISPRO)
****SSFNLEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSSRIYASIVNGNG**************QRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKI*********************************************************SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD**************************************************PRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKL*********************************YVSQDTQKWAMKLKDLDINWVE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITSSSFNLEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSSRIYASIVNGNGNGDNGKNRKEDEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	663	2.2.26 [Sep-21-2011]
Q02572	152	Putative polyketide cycla	N/A	no	0.202	0.881	0.244	0.0008

>sp|Q02572|CYPC_STRCN Putative polyketide cyclase OS=Streptomyces cyaneus GN=curF PE=4 SV=1

 Score = 46.2 bits (108), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 281 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 337
           IT+ APV  VW++    E  PE+    A  ++LSRE N V     +     G ++  +  
Sbjct: 9   ITIAAPVDLVWDMTNDLERWPELFSEYASCEVLSREANTVTFRLTMHPDENGKVWSWVSE 68

Query: 338 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 396
           R      ++ +  +   +VE G F+     W +E+     T + ++ +  M+ ++ + +A
Sbjct: 69  RT----ADREKLVVRARRVETGPFEYMNIVWEYEET-PDGTRMHWTQDFAMKPDAPVDDA 123

Query: 397 IMEEVIYEDLPSNLCAIRDYVEK 419
            M ++I  + P  +  IRD +E+
Sbjct: 124 GMTDIINRNSPIQMALIRDRIEE 146

Streptomyces cyaneus (taxid: 1904)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	663
225438333	735	PREDICTED: uncharacterized protein LOC10	0.797	0.719	0.730	0.0
224083544	727	predicted protein [Populus trichocarpa]	0.796	0.726	0.728	0.0
255563831	722	conserved hypothetical protein [Ricinus	0.796	0.731	0.731	0.0
296082624	712	unnamed protein product [Vitis vinifera]	0.763	0.710	0.713	0.0
357520155	742	cyclase/dehydrase family protein [Medica	0.802	0.716	0.680	0.0
449520367	727	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.794	0.724	0.684	0.0
356527540	721	PREDICTED: uncharacterized protein LOC10	0.790	0.726	0.677	0.0
356512876	725	PREDICTED: uncharacterized protein LOC10	0.785	0.718	0.675	0.0
356518814	724	PREDICTED: uncharacterized protein LOC10	0.790	0.723	0.668	0.0
22326677	719	uncharacterized protein [Arabidopsis tha	0.778	0.717	0.665	0.0

>gi|225438333|ref|XP_002273364.1| PREDICTED: uncharacterized protein LOC100262883 [Vitis vinifera]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/538 (73%), Positives = 454/538 (84%), Gaps = 9/538 (1%)

Query: 129 RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSF 188
           RSSTT+LSYEVNVIPR NFPAIFLERIIRSDLPVNLQALACR+E++F  NQKIP I++S 
Sbjct: 204 RSSTTSLSYEVNVIPRFNFPAIFLERIIRSDLPVNLQALACRSEKNFEGNQKIPFIESSL 263

Query: 189 GELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVC 248
           G  S+  +A+P +D DG L  +  +P G F ++  SS+F  +  SSS+L+S WGVFG+VC
Sbjct: 264 GTASIADVANPGIDLDGALSVEKLSP-GVFKKSHASSSFDPLFQSSSELSSNWGVFGKVC 322

Query: 249 RLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLA 308
           +LDRPC VDEVHLRRFDGLLENGGVHRCVVAS+TVKAPV EVWNV+TAYETLPEIVPNLA
Sbjct: 323 KLDRPCMVDEVHLRRFDGLLENGGVHRCVVASMTVKAPVREVWNVLTAYETLPEIVPNLA 382

Query: 309 ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWL 368
           ISKILSRENNKVRILQEGCKGLLYMVLHAR V+D+CEQ EQEISF QVEGDFDSFQGKW+
Sbjct: 383 ISKILSRENNKVRILQEGCKGLLYMVLHARAVLDLCEQLEQEISFVQVEGDFDSFQGKWI 442

Query: 369 FEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 428
            EQLG+ HTLLKY+VESKM ++S LSEAIMEEVIYEDLPSNLCAIRDY+EKRE  NSL  
Sbjct: 443 LEQLGNQHTLLKYTVESKMHRDSFLSEAIMEEVIYEDLPSNLCAIRDYIEKREASNSL-- 500

Query: 429 DSVETTNHTQSSDD--LTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVL 486
              ET+++ + S++  ++ S+           +++ D   PN  +QRPRVPGLQ NIEVL
Sbjct: 501 ---ETSDYVRYSEEQFISSSNGRDVDYHPKPADEVSDVSGPNPLRQRPRVPGLQRNIEVL 557

Query: 487 KAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPK 546
           KAELL+FI +HGQEGFMPMRKQLRKHGRVD+EKAITRMGGFRR+ASLMNL+LAYKHRKPK
Sbjct: 558 KAELLKFILEHGQEGFMPMRKQLRKHGRVDIEKAITRMGGFRRIASLMNLSLAYKHRKPK 617

Query: 547 GYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSL 606
           GYWDNLENL+EEI+RFQRSWGMDPS+MPSRK+FERAGRYDIARALEKWGGLHEVSRLLSL
Sbjct: 618 GYWDNLENLKEEITRFQRSWGMDPSYMPSRKTFERAGRYDIARALEKWGGLHEVSRLLSL 677

Query: 607 KLRHPNRRAHIIKDKKVDYV-DPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
           K+RHPNR+ ++ K K+ D+V  P  +  E +  SKPYV QD QKW M L+ LDINWVE
Sbjct: 678 KVRHPNRQPNLTKHKRSDFVASPDMVVDEDRTTSKPYVPQDAQKWLMSLQHLDINWVE 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083544|ref|XP_002307063.1| predicted protein [Populus trichocarpa] gi|222856512|gb|EEE94059.1| predicted protein [Populus trichocarpa]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/537 (72%), Positives = 441/537 (82%), Gaps = 9/537 (1%)

Query: 127 ACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKN 186
             R  TTTLSYEVNV+PR NFPAIFLERII SDLPVNL+ALACRAER F  NQK  + ++
Sbjct: 200 GTRHGTTTLSYEVNVMPRYNFPAIFLERIIGSDLPVNLRALACRAERDFEGNQKTGITES 259

Query: 187 SFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQ 246
              E S+    SP +  DG   EK K    +  ++  SS FG + P S+DLN+ WGV G+
Sbjct: 260 ---ETSMTASTSPGMVLDGAFREKDKLSTEDLKQSYPSSTFGPMLPPSNDLNNNWGVLGK 316

Query: 247 VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN 306
            CRLDR C VDEVHLRR+DGLLENGGVHRCV ASITVKAPV EVWNV+TAYE+LPE VPN
Sbjct: 317 ACRLDRRCMVDEVHLRRYDGLLENGGVHRCVFASITVKAPVREVWNVLTAYESLPEFVPN 376

Query: 307 LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGK 366
           LAISKILSRENNKVRILQEGCKGLLYMVLHARVV+D+CE  EQEISFEQVEGDFDSFQGK
Sbjct: 377 LAISKILSRENNKVRILQEGCKGLLYMVLHARVVLDLCEHLEQEISFEQVEGDFDSFQGK 436

Query: 367 WLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSL 426
           W+ EQLGSHHTLLKY+VESK  +++ LSEAIMEEVIYEDLPSNLCAIRDY+EKRE     
Sbjct: 437 WILEQLGSHHTLLKYNVESKTHRDTFLSEAIMEEVIYEDLPSNLCAIRDYIEKRE----- 491

Query: 427 ANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVL 486
           +N+S ET  H Q S +L  S  +     S   + + D   PNS KQRPRVPGLQ +I+VL
Sbjct: 492 SNNSSETEEHGQYSKELDSSRGDSYHEHSMAVQQVSDVSNPNSLKQRPRVPGLQRDIDVL 551

Query: 487 KAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPK 546
           K+ELL+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+A+LMNL+LAYKHRKPK
Sbjct: 552 KSELLKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIATLMNLSLAYKHRKPK 611

Query: 547 GYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSL 606
           GYWDNLENL+EEISRFQRSWGMD SFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL+L
Sbjct: 612 GYWDNLENLQEEISRFQRSWGMDLSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLAL 671

Query: 607 KLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
           K+RHPNR+A+ IKD+K+D V   + E E KIP+K YVSQDTQKW MK KDLDINWV+
Sbjct: 672 KVRHPNRQANSIKDRKIDDVS-TDAEGEDKIPTKAYVSQDTQKWLMKFKDLDINWVD 727

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563831|ref|XP_002522916.1| conserved hypothetical protein [Ricinus communis] gi|223537843|gb|EEF39459.1| conserved hypothetical protein [Ricinus communis]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/537 (73%), Positives = 438/537 (81%), Gaps = 9/537 (1%)

Query: 127 ACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKN 186
             R+ TT LSYEVNVIPR NFPAIFLERIIRSDLP+NLQALA RAER+F  NQK   I  
Sbjct: 195 GTRAGTTMLSYEVNVIPRFNFPAIFLERIIRSDLPLNLQALAGRAERTFEGNQKTS-IAE 253

Query: 187 SFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQ 246
           S   +++     P L+  G   EK     G+ NE+  SS+FG VP SSSDLN+ WGVFG+
Sbjct: 254 SGKSMAISTFHGPGLN--GSSCEKRNMSAGDLNESYQSSHFGPVPSSSSDLNTNWGVFGK 311

Query: 247 VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN 306
           VC LDRP   DEVHLRR+DGLLE+GGVHRCVVASITVKAPV EVW V+TAYE+LPEIVPN
Sbjct: 312 VCSLDRPSIADEVHLRRYDGLLEDGGVHRCVVASITVKAPVREVWKVLTAYESLPEIVPN 371

Query: 307 LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGK 366
           LAISKIL RENNKVRILQEGCKGLLYMVLHARVV+D+CE  EQEISFEQ EGDFDSFQGK
Sbjct: 372 LAISKILLRENNKVRILQEGCKGLLYMVLHARVVLDLCEHLEQEISFEQAEGDFDSFQGK 431

Query: 367 WLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSL 426
           WL EQLGSHHTLLKY+V SKM K+S LSEAIMEEVIYEDLPSN+CAIRDY+EKRE   SL
Sbjct: 432 WLLEQLGSHHTLLKYTVNSKMHKDSFLSEAIMEEVIYEDLPSNMCAIRDYIEKREDKISL 491

Query: 427 ANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVL 486
                E     Q S +L  S+ ++     +   D+VD   PNS +QRPRVPGLQ +IEVL
Sbjct: 492 -----EMHLLGQYSKELESSNCDIDTKYGNATGDIVDLNNPNSVRQRPRVPGLQRDIEVL 546

Query: 487 KAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPK 546
           K+ELL+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+ASLMNL+LAYK RKPK
Sbjct: 547 KSELLKFISEHGQEGFMPMRKQLRMHGRVDIEKAITRMGGFRRIASLMNLSLAYKRRKPK 606

Query: 547 GYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSL 606
           GYWDNLENL+EEI RFQ SWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL+L
Sbjct: 607 GYWDNLENLQEEIGRFQLSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLAL 666

Query: 607 KLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
           K+RHPNR+A++IKDKK+DY    N+E E  I SK YVSQDT+KW  KLKDLDINW E
Sbjct: 667 KVRHPNRQANVIKDKKIDYTTSTNVEGEDGI-SKTYVSQDTEKWLTKLKDLDINWGE 722

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082624|emb|CBI21629.3| unnamed protein product [Vitis vinifera]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/538 (71%), Positives = 441/538 (81%), Gaps = 32/538 (5%)

Query: 129 RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSF 188
           RSSTT+LSYEVNVIPR NFPAIFLERIIRSDLPVNLQALACR+E++F  NQKIP I++S 
Sbjct: 204 RSSTTSLSYEVNVIPRFNFPAIFLERIIRSDLPVNLQALACRSEKNFEGNQKIPFIESSL 263

Query: 189 GELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVC 248
           G  S+                         +++  SS+F  +  SSS+L+S WGVFG+VC
Sbjct: 264 GTASIA------------------------DKSHASSSFDPLFQSSSELSSNWGVFGKVC 299

Query: 249 RLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLA 308
           +LDRPC VDEVHLRRFDGLLENGGVHRCVVAS+TVKAPV EVWNV+TAYETLPEIVPNLA
Sbjct: 300 KLDRPCMVDEVHLRRFDGLLENGGVHRCVVASMTVKAPVREVWNVLTAYETLPEIVPNLA 359

Query: 309 ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWL 368
           ISKILSRENNKVRILQEGCKGLLYMVLHAR V+D+CEQ EQEISF QVEGDFDSFQGKW+
Sbjct: 360 ISKILSRENNKVRILQEGCKGLLYMVLHARAVLDLCEQLEQEISFVQVEGDFDSFQGKWI 419

Query: 369 FEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 428
            EQLG+ HTLLKY+VESKM ++S LSEAIMEEVIYEDLPSNLCAIRDY+EKRE  NSL  
Sbjct: 420 LEQLGNQHTLLKYTVESKMHRDSFLSEAIMEEVIYEDLPSNLCAIRDYIEKREASNSL-- 477

Query: 429 DSVETTNHTQSSDD--LTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVL 486
              ET+++ + S++  ++ S+           +++ D   PN  +QRPRVPGLQ NIEVL
Sbjct: 478 ---ETSDYVRYSEEQFISSSNGRDVDYHPKPADEVSDVSGPNPLRQRPRVPGLQRNIEVL 534

Query: 487 KAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPK 546
           KAELL+FI +HGQEGFMPMRKQLRKHGRVD+EKAITRMGGFRR+ASLMNL+LAYKHRKPK
Sbjct: 535 KAELLKFILEHGQEGFMPMRKQLRKHGRVDIEKAITRMGGFRRIASLMNLSLAYKHRKPK 594

Query: 547 GYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSL 606
           GYWDNLENL+EEI+RFQRSWGMDPS+MPSRK+FERAGRYDIARALEKWGGLHEVSRLLSL
Sbjct: 595 GYWDNLENLKEEITRFQRSWGMDPSYMPSRKTFERAGRYDIARALEKWGGLHEVSRLLSL 654

Query: 607 KLRHPNRRAHIIKDKKVDYV-DPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
           K+RHPNR+ ++ K K+ D+V  P  +  E +  SKPYV QD QKW M L+ LDINWVE
Sbjct: 655 KVRHPNRQPNLTKHKRSDFVASPDMVVDEDRTTSKPYVPQDAQKWLMSLQHLDINWVE 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520155|ref|XP_003630366.1| cyclase/dehydrase family protein [Medicago truncatula] gi|355524388|gb|AET04842.1| cyclase/dehydrase family protein [Medicago truncatula]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/539 (68%), Positives = 437/539 (81%), Gaps = 7/539 (1%)

Query: 127 ACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKN 186
             RSS+T LSYEVNVIPR NFPAIFLERI+RSDLPVNL+ALA R ER+   NQK+P  ++
Sbjct: 209 GTRSSSTNLSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAYRVERNLLGNQKLPQPED 268

Query: 187 SFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQ 246
              + SL +  S     +G L E  K   G+  E + +S  GS+P SSS+LNS WG+FG+
Sbjct: 269 DLHKTSLVVNGSSVKKINGSLCETDKLAPGQDKEGLDTSISGSLPASSSELNSNWGIFGK 328

Query: 247 VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN 306
           VC LD+PC VDEVHLRRFDGLLENGGVHRCVVASITVKAPV +VWNVM++YETLPEIVPN
Sbjct: 329 VCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNVMSSYETLPEIVPN 388

Query: 307 LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGK 366
           LAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CEQ EQEISFEQ EGDFDSF GK
Sbjct: 389 LAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQAEGDFDSFHGK 448

Query: 367 WLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSL 426
           W FEQLG+HHTLLKYSV+SKM++++ LSEAIMEEVIYEDLPSNLCAIRDYVE ++    L
Sbjct: 449 WTFEQLGNHHTLLKYSVDSKMRRDTFLSEAIMEEVIYEDLPSNLCAIRDYVENQKASQFL 508

Query: 427 ANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVL 486
             +  E   ++     L+ S D+  +SS+   +D+ D    +S  QR RVPGLQ +IEVL
Sbjct: 509 --EVCEQNTNSGQQIILSGSGDDNNSSSA---DDISDCNVQSSSNQRSRVPGLQRDIEVL 563

Query: 487 KAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPK 546
           K+ELL+F++++GQEGFMPMRKQLR HGRVD+EKAITRMGGFR++A++MNL+LAYK+RKPK
Sbjct: 564 KSELLKFVAEYGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRKIATIMNLSLAYKYRKPK 623

Query: 547 GYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSL 606
           GYWDNLENL++EISRFQR WGMDPSFMPSRKSFER GR+DIARALEKWGGLHEVSRLLSL
Sbjct: 624 GYWDNLENLQDEISRFQRCWGMDPSFMPSRKSFERVGRFDIARALEKWGGLHEVSRLLSL 683

Query: 607 KLRHPNRRA--HIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
           K R    R   ++ KDKK D+ + A+++ E    S+PY+SQDT KW  +LK+LDINWVE
Sbjct: 684 KARRKRTRQDNNLGKDKKNDHRESADVDSEINAASRPYISQDTHKWHTELKELDINWVE 742

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520367|ref|XP_004167205.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212159 [Cucumis sativus]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/539 (68%), Positives = 425/539 (78%), Gaps = 12/539 (2%)

Query: 125 NLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMI 184
           N   RSS T LSYEVNVIPR NFPAI LE IIRSDLPVNL+ALA RAE      Q++  I
Sbjct: 201 NAGTRSSPTILSYEVNVIPRFNFPAILLEXIIRSDLPVNLRALAFRAEEKSEGGQRVGNI 260

Query: 185 KNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVF 244
           K+S   +    L   +   D  + E  +  +        +SN GSVPP S++LN+ WGVF
Sbjct: 261 KDSKDVVLSNTLNGATCVKDEIVQENSRGGNS-------NSNLGSVPPLSNELNTNWGVF 313

Query: 245 GQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIV 304
           G+VCRLD+ C VDEVHLRRFDGLLENGGVHRCVVASITVKAPV EVWNV+TAYE+LPE+V
Sbjct: 314 GKVCRLDKRCMVDEVHLRRFDGLLENGGVHRCVVASITVKAPVREVWNVLTAYESLPEVV 373

Query: 305 PNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQ 364
           PNLAISKILSRE+NKVRILQEGCKGLLYMVLHARVV+D+CEQ EQEISFEQVEGDFDS  
Sbjct: 374 PNLAISKILSRESNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQVEGDFDSLS 433

Query: 365 GKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDN 424
           GKW FEQLGSHHTLLKYSVES+M K++ LSEA+MEEV+YEDLPSNLCAIRD +EKR    
Sbjct: 434 GKWHFEQLGSHHTLLKYSVESRMHKDTFLSEALMEEVVYEDLPSNLCAIRDSIEKR---- 489

Query: 425 SLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIE 484
            +  +S E  +   S +      +      ++  E + D     SF+ RP+VPGLQ +IE
Sbjct: 490 -VLKNSFEALDQGDSEEKSVSRRNNQSNGYTTTAEGVSDINGRASFRPRPKVPGLQRDIE 548

Query: 485 VLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRK 544
           VLKAE+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+ASLMNL+LAYKHRK
Sbjct: 549 VLKAEVLKFISEHGQEGFMPMRKQLRMHGRVDIEKAITRMGGFRRIASLMNLSLAYKHRK 608

Query: 545 PKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL 604
           PKGYWD  +NL+EEI+RFQ+SWGMDPS+MPSRKSFERAGRYDIARALEKWGGLHEVSRLL
Sbjct: 609 PKGYWDKFDNLQEEINRFQKSWGMDPSYMPSRKSFERAGRYDIARALEKWGGLHEVSRLL 668

Query: 605 SLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
           SLK+RHPNR+    KD+K DYV   + + E K PSKPY+SQDT+KW   LK LDINWVE
Sbjct: 669 SLKVRHPNRQPSFAKDRKSDYVVVNDFDGESKAPSKPYISQDTEKWLTGLKYLDINWVE 727

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527540|ref|XP_003532367.1| PREDICTED: uncharacterized protein LOC100785172 [Glycine max]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/540 (67%), Positives = 427/540 (79%), Gaps = 16/540 (2%)

Query: 127 ACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKN 186
             RSS+T LSYEVNVIPR NFPAIFLERII+SDLPVNLQALA R ER+   NQK+ + +N
Sbjct: 195 GTRSSSTNLSYEVNVIPRFNFPAIFLERIIKSDLPVNLQALAYRVERNISGNQKLSLPEN 254

Query: 187 SFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLN-SKWGVFG 245
              + S  I  S +   +  L E          E++V+S  G++P  SS++N + WG FG
Sbjct: 255 HLDKTSSDINESSAQKINSALCEN--------KEDLVNSIPGTLPMPSSEVNINNWGAFG 306

Query: 246 QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVP 305
           + CRLDRPC VDE+HLRRFDGLLENGGVHRCV ASITVKAPV +VW VM++YE+LPEIVP
Sbjct: 307 KSCRLDRPCMVDEIHLRRFDGLLENGGVHRCVFASITVKAPVRDVWTVMSSYESLPEIVP 366

Query: 306 NLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQG 365
           NLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CE  EQEISFEQVEGDFDSFQG
Sbjct: 367 NLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYLEQEISFEQVEGDFDSFQG 426

Query: 366 KWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 425
           KW FEQLG+HHTLLKYS+ESKM+K++ LSEAIMEEVIYEDLPSNLCAIRDY+E     N 
Sbjct: 427 KWTFEQLGNHHTLLKYSLESKMRKDTFLSEAIMEEVIYEDLPSNLCAIRDYIE-----NK 481

Query: 426 LANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEV 485
            A++ +E      +S   T  S      S    EDL D    +S +QRPRVPGLQ +IEV
Sbjct: 482 TASNILEACKQNTNSGQQTVPSGFEDDDSYCSAEDLSDCNAQSSSQQRPRVPGLQRDIEV 541

Query: 486 LKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKP 545
           LK+ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAI R GGFR++A++MNL+LAYKHRKP
Sbjct: 542 LKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINRKGGFRKIATIMNLSLAYKHRKP 601

Query: 546 KGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLS 605
           KGYWDNLENL  EISRFQRSWGMDPSFMPSR+SFERAGR+DIARALEKWGGL +VSRLLS
Sbjct: 602 KGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAGRFDIARALEKWGGLRQVSRLLS 661

Query: 606 LKLRHP-NRRAHIIKDKKV-DYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
           LK+R   +R+  + KDKKV D V   +++ E K PS+P VSQD QKW  +LK LDINWVE
Sbjct: 662 LKVRRQRSRQGKLAKDKKVDDDVASPDVDREIKTPSRPTVSQDPQKWLTELKQLDINWVE 721

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512876|ref|XP_003525141.1| PREDICTED: uncharacterized protein LOC100797103 [Glycine max]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/543 (67%), Positives = 425/543 (78%), Gaps = 22/543 (4%)

Query: 127 ACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKN 186
             RSS+T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+ALA R ER+   NQK+ + +N
Sbjct: 199 GTRSSSTNLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAYRVERNISGNQKLSLPEN 258

Query: 187 SFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLN-SKWGVFG 245
              + S  I  S +   +  L E          E +VSS  G++P  SS++N + WG FG
Sbjct: 259 HLDKTSSDIYESSAQKINSALCEN--------REYLVSSIPGTLPMPSSEVNINNWGAFG 310

Query: 246 QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVP 305
           + CRLDRPC VDE+HLRRFDGLLENGGVHRCV A+ITVKA V +VWNVM++YETLPEIVP
Sbjct: 311 KTCRLDRPCVVDEIHLRRFDGLLENGGVHRCVFATITVKASVRDVWNVMSSYETLPEIVP 370

Query: 306 NLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQG 365
           NLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CE  EQEISFEQVEGDFDSF G
Sbjct: 371 NLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYLEQEISFEQVEGDFDSFHG 430

Query: 366 KWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 425
           KW FEQLG+HHTLLKYSVESKM+K++ LSEAIMEEVIYEDLPSNLCAIRDY+E R   N 
Sbjct: 431 KWTFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYEDLPSNLCAIRDYIENRTASNM 490

Query: 426 LANDSVETTNHTQSSDDLTQSSDELG---ASSSSDNEDLVDSETPNSFKQRPRVPGLQTN 482
                       + + DL Q +   G     S    EDL D    +S +QRPRVPGLQ +
Sbjct: 491 F--------EACKQNTDLGQQTVPSGFEDDDSYCSAEDLFDCNAQSSSQQRPRVPGLQRD 542

Query: 483 IEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKH 542
           IEVLK+ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAI RMGGFR++A++MNL+LAYKH
Sbjct: 543 IEVLKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINRMGGFRKIATIMNLSLAYKH 602

Query: 543 RKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSR 602
           RKPKGYWDNLENL  EISRFQRSWGMDPSFMPSR+SFERAGR+DIARALEKWGGL +VSR
Sbjct: 603 RKPKGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAGRFDIARALEKWGGLRQVSR 662

Query: 603 LLSLKLRHP-NRRAHIIKDKKV-DYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDIN 660
           LLSLK+R   +R+ ++ KDKKV D V   +++ E K PS+P VSQD Q W  +LK LDIN
Sbjct: 663 LLSLKVRRQRSRQDNLAKDKKVDDDVASPDVDSEIKTPSRPTVSQDPQNWLTELKQLDIN 722

Query: 661 WVE 663
           WVE
Sbjct: 723 WVE 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518814|ref|XP_003528072.1| PREDICTED: uncharacterized protein LOC100777483 [Glycine max]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/549 (66%), Positives = 429/549 (78%), Gaps = 25/549 (4%)

Query: 127 ACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKN 186
             RSST  LSYEVNVIPR NFPAIFLERIIRSDLPVNL+ALA RAER+F   QK+P+ +N
Sbjct: 189 GTRSSTAILSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAYRAERNFVGYQKLPVSEN 248

Query: 187 SFGELSLPI-----------LASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSS 235
              +  + I           L+      +G L E  K P  E  + I +S  GS+  SSS
Sbjct: 249 HLHKTYVAINGSSVKKINGALSESFKKMNGALCESDKLPPAENKKEIATSVSGSMLTSSS 308

Query: 236 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMT 295
           ++ S WGVFG+VCRLDRP  VDEVHLRRFDGLLENGGVHRCVVASITVKA V EVWN++T
Sbjct: 309 EVRSNWGVFGKVCRLDRPRMVDEVHLRRFDGLLENGGVHRCVVASITVKAHVCEVWNILT 368

Query: 296 AYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 355
           AYETLP+IVPNLAISK++SR+NNKVRILQEGCKGLLYMVLHARVV+D+CE  EQEISFEQ
Sbjct: 369 AYETLPKIVPNLAISKVVSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEYLEQEISFEQ 428

Query: 356 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 415
           VEGDFDSF+GKW+FEQLG+HHTLLKYSVESKM+K++ LSEAIMEEVIYEDLPSNL AIRD
Sbjct: 429 VEGDFDSFRGKWIFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYEDLPSNLSAIRD 488

Query: 416 YVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPR 475
           Y+E     N  A+   E      +S     SS  L   +S   E++ + +   S +QR +
Sbjct: 489 YIE-----NMNASKYSEVCEQNMNSGQQILSSGYLKDDNSGSAEEVPNCDVQCSSQQRSK 543

Query: 476 VPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMN 535
           VPGLQ NI+VL++ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAITRMGGFR++A+++N
Sbjct: 544 VPGLQRNIKVLESELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRKIATILN 603

Query: 536 LALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWG 595
           L+LAYKHRKPKGYWDNLENL+EEISRFQR WG+DPSFMPSRKSFERAGRYDIARALEKWG
Sbjct: 604 LSLAYKHRKPKGYWDNLENLQEEISRFQRGWGIDPSFMPSRKSFERAGRYDIARALEKWG 663

Query: 596 GLHEVSRLLSLKLRHPNRRAHIIKDKKV-DYVDPANLECEGKIPSKPYVSQDTQKWAMKL 654
           GLHEVSRLLSLK+R  +R+ ++ KDK+  D+ D      E K P    +SQDTQKW  KL
Sbjct: 664 GLHEVSRLLSLKVRQRSRQDNLAKDKRSGDHTDS-----EMKTPC---ISQDTQKWLTKL 715

Query: 655 KDLDINWVE 663
           K LDINW E
Sbjct: 716 KHLDINWFE 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326677|ref|NP_680157.1| uncharacterized protein [Arabidopsis thaliana] gi|13548330|emb|CAC35877.1| putative protein [Arabidopsis thaliana] gi|26450803|dbj|BAC42510.1| unknown protein [Arabidopsis thaliana] gi|29029030|gb|AAO64894.1| At5g08720 [Arabidopsis thaliana] gi|332003958|gb|AED91341.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/541 (66%), Positives = 423/541 (78%), Gaps = 25/541 (4%)

Query: 127 ACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKN 186
             RS  T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+A+A +AE+ +    K  +I++
Sbjct: 199 GIRSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAVARQAEKIYKDCGKPSIIED 258

Query: 187 SFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQ 246
             G +S     S  ++FD    E+            V+S+ GS+   S++LN+ WGV+G+
Sbjct: 259 LLGIISSQPAPSNGIEFDSLATERS-----------VASSVGSLA-HSNELNNNWGVYGK 306

Query: 247 VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN 306
            C+LD+PC VDEVHLRRFDGLLENGGVHRC VASITVKAPV EVW V+T+YE+LPEIVPN
Sbjct: 307 ACKLDKPCTVDEVHLRRFDGLLENGGVHRCAVASITVKAPVCEVWKVLTSYESLPEIVPN 366

Query: 307 LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGK 366
           LAISKILSR+NNKVRILQEGCKGLLYMVLHAR V+D+ E  EQEI FEQVEGDFDS +GK
Sbjct: 367 LAISKILSRDNNKVRILQEGCKGLLYMVLHARAVLDLHEIREQEIRFEQVEGDFDSLEGK 426

Query: 367 WLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSL 426
           W+FEQLGSHHTLLKY+VESKM+K+S LSEAIMEEVIYEDLPSNLCAIRDY+EKR G+ S 
Sbjct: 427 WIFEQLGSHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSNLCAIRDYIEKR-GEKSS 485

Query: 427 ANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVL 486
            +  +ET    Q S++   SS      +  +N+D  D       KQR R+PGLQ +IEVL
Sbjct: 486 ESCKLET---CQVSEETCSSSRAKSVETVYNNDDGSDQT-----KQRRRIPGLQRDIEVL 537

Query: 487 KAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPK 546
           K+E+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+A +MNL+LAYKHRKPK
Sbjct: 538 KSEILKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIALMMNLSLAYKHRKPK 597

Query: 547 GYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSL 606
           GYWDNLENL+EEI RFQ+SWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL+L
Sbjct: 598 GYWDNLENLQEEIGRFQQSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLAL 657

Query: 607 KLRHPNRRAHIIKDKKVDYV----DPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWV 662
            +RHPNR+ +  KD     +      A+L       +KPYVSQDT+KW   LKDLDINWV
Sbjct: 658 NVRHPNRQLNSRKDNGNTILRTESTEADLNSTVNKNNKPYVSQDTEKWLYNLKDLDINWV 717

Query: 663 E 663
           +
Sbjct: 718 Q 718

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	663
TAIR|locus:504956340	719	AT5G08720 "AT5G08720" [Arabido	0.773	0.713	0.653	2.8e-198
TAIR|locus:2133442	288	AT4G01650 "AT4G01650" [Arabido	0.152	0.350	0.383	1.3e-12

TAIR|locus:504956340 AT5G08720 "AT5G08720" [Arabidopsis thaliana (taxid:3702)]

 Score = 1740 (617.6 bits), Expect = 2.8e-198, Sum P(2) = 2.8e-198
 Identities = 353/540 (65%), Positives = 412/540 (76%)

Query:   129 RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSF 188
             RS  T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+A+A +AE+ +    K  +I++  
Sbjct:   201 RSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAVARQAEKIYKDCGKPSIIEDLL 260

Query:   189 GELSLPILASPSLDFDGGLPEKGKAPHGEFNENIXXXXXXXXXXXXXDLNSKWGVFGQVC 248
             G +S     S  ++FD    E+  A                      +LN+ WGV+G+ C
Sbjct:   261 GIISSQPAPSNGIEFDSLATERSVA------------SSVGSLAHSNELNNNWGVYGKAC 308

Query:   249 RLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLA 308
             +LD+PC VDEVHLRRFDGLLENGGVHRC VASITVKAPV EVW V+T+YE+LPEIVPNLA
Sbjct:   309 KLDKPCTVDEVHLRRFDGLLENGGVHRCAVASITVKAPVCEVWKVLTSYESLPEIVPNLA 368

Query:   309 ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWL 368
             ISKILSR+NNKVRILQEGCKGLLYMVLHAR V+D+ E  EQEI FEQVEGDFDS +GKW+
Sbjct:   369 ISKILSRDNNKVRILQEGCKGLLYMVLHARAVLDLHEIREQEIRFEQVEGDFDSLEGKWI 428

Query:   369 FEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 428
             FEQLGSHHTLLKY+VESKM+K+S LSEAIMEEVIYEDLPSNLCAIRDY+EKR G+ S  +
Sbjct:   429 FEQLGSHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSNLCAIRDYIEKR-GEKSSES 487

Query:   429 DSVETTNHXXXXXXXXXXXXXXXXXXXXDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKA 488
               +ET                       +N+D  D +T    KQR R+PGLQ +IEVLK+
Sbjct:   488 CKLETCQ---VSEETCSSSRAKSVETVYNNDDGSD-QT----KQRRRIPGLQRDIEVLKS 539

Query:   489 ELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGY 548
             E+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+A +MNL+LAYKHRKPKGY
Sbjct:   540 EILKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIALMMNLSLAYKHRKPKGY 599

Query:   549 WDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKL 608
             WDNLENL+EEI RFQ+SWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL+L +
Sbjct:   600 WDNLENLQEEIGRFQQSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLALNV 659

Query:   609 RHPNRRAHIIKDK-----KVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 663
             RHPNR+ +  KD      + +  + A+L       +KPYVSQDT+KW   LKDLDINWV+
Sbjct:   660 RHPNRQLNSRKDNGNTILRTESTE-ADLNSTVNKNNKPYVSQDTEKWLYNLKDLDINWVQ 718

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2133442 AT4G01650 "AT4G01650" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 43/112 (38%), Positives = 68/112 (60%)

Query:   275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGL-LYM 333
             R + + I ++A +  VW+V+T YE L + +P L +S+++ +E N+VR+ Q G + L L +
Sbjct:   115 RRIRSKIGMEASLDSVWSVLTDYEKLSDFIPGLVVSELVEKEGNRVRLFQMGQQNLALGL 174

Query:   334 VLHARVVMDICEQ------H--EQEISFEQVEGDFDSFQGKWLFEQL--GSH 375
               +A+ V+D  E+      H   +EI F+ VEGDF  F+GKW  EQL  G H
Sbjct:   175 KFNAKAVLDCYEKELEVLPHGRRREIDFKMVEGDFQLFEGKWSIEQLDKGIH 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	663
cd08866	144	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain o	2e-51
pfam03364	125	pfam03364, Polyketide_cyc, Polyketide cyclase / de	2e-16
cd08866	144	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain o	1e-07
cd07812	141	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/Cox	1e-07
cd08866	144	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain o	2e-07
cd08861	142	cd08861, OtcD1_ARO-CYC_like, N-terminal and C-term	9e-06
pfam03364	125	pfam03364, Polyketide_cyc, Polyketide cyclase / de	0.002
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	0.004

>gnl|CDD|176875 cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

 Score =  174 bits (443), Expect = 2e-51
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 5/146 (3%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 336
           VVA + V AP   VW V+T Y+ L E +PNLA S++L R  N+V + Q G +G+L+    
Sbjct: 1   VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFE 60

Query: 337 ARVVMDICEQHE--QEISFEQVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLL 393
           ARVV+++ E+ E  +E+ FE VEGDF  F+G W  E L     TLL Y VE K    +  
Sbjct: 61  ARVVLELREREEFPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAP- 119

Query: 394 SEAIMEEVIYEDLPSNLCAIRDYVEK 419
              ++E V+ +DLP+NL AIR   E 
Sbjct: 120 -VFLVEFVLRQDLPTNLLAIRAEAES 144

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 144

>gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport

 Score = 75.6 bits (186), Expect = 2e-16
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 283 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMD 342
           V AP  +VW ++T  E  PE +P     ++L R+ +          G L     ARV + 
Sbjct: 1   VPAPAEQVWALVTDVERYPEFLPWCKSVEVLDRDGSLADW--RVAFGGLRRSFTARVTLQ 58

Query: 343 ICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI 402
             E+    I    V+GDF   +G W FE  G   T +K ++E   +  S L  A++  V 
Sbjct: 59  PPER----IEMVLVDGDFKRLEGSWRFEPGGP-GTRVKVTLELDFEFASPLPGALLGFVF 113

Query: 403 YEDLPSNLCAIR 414
              L + L A R
Sbjct: 114 RRVLRTLLEAFR 125

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125

>gnl|CDD|176875 cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 96  IKAEMLVNADVDSVWNALTDYERLADFVPNLA 127
           + A + V A  ++VW  LTDY+ LA+F+PNLA
Sbjct: 1   VVARVRVPAPPETVWAVLTDYDNLAEFIPNLA 32

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 144

>gnl|CDD|176854 cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVL 335
           V ASI + AP   VW++++  E  PE  P L   ++L      V      G KG   + L
Sbjct: 1   VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTL 60

Query: 336 HARVVMDICEQHEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVE 384
            + V         +   F    G       G+W  E  G   T + Y+VE
Sbjct: 61  TSEVTEVD---PPRPGRFRVTGGGGGVDGTGEWRLEPEGDGGTRVTYTVE 107

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 141

>gnl|CDD|176875 cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 79  QRKVHCEVEVVSWRERRIKAEMLVNADVDS---VWNALTDYERLADFVPNLACRSSTTTL 135
           + +V  E+       R +  EM V  D       W      E LAD           T L
Sbjct: 60  EARVVLELREREEFPRELDFEM-VEGDFKRFEGSW----RLEPLAD--------GGGTLL 106

Query: 136 SYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 173
           +YEV V P    P   +E ++R DLP NL A+   AE 
Sbjct: 107 TYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 144

>gnl|CDD|176870 cd08861, OtcD1_ARO-CYC_like, N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 21/152 (13%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG-LLYMV- 334
           V  S+TV AP  +V++++   E  PE +P +            V  L+       L M  
Sbjct: 1   VEHSVTVAAPAEDVYDLLADAERWPEFLPTV-----------HVERLELDGGVERLRMWA 49

Query: 335 ------LHARVVMDICEQHEQEISFEQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESK 386
                 +H      + +   + I F Q E      S  G+W FE LG   T +    +  
Sbjct: 50  TAFDGSVHTWTSRRVLDPEGRRIVFRQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFT 109

Query: 387 MQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418
           +  +S  +   +   +  +  + L A+R   E
Sbjct: 110 LGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this gene results in the production of novel polyketides having shorter chain lengths (by up to 10 carbons) than OTC. Monodomain ARO/CYCs have a single ARO/CYC domain, and are often associated with C9-C14 first ring cyclizations, these latter domains belong to a different subfamily in the SRPBCC superfamily. Length = 142

>gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 102 VNADVDSVWNALTDYERLADFVPNLACRSSTTTLSYEVNVIPRLNFPAI 150
           V A  + VW  +TD ER  +F+P   C+S             R+ F  +
Sbjct: 1   VPAPAEQVWALVTDVERYPEFLPW--CKSVEVLDRDGSLADWRVAFGGL 47

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVL 335
            V  S+T+ AP  +VW +++ +  L +  P +A  + L      V     G    + +  
Sbjct: 2   KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCE-LEGGGPGV-----GAVRTVTLKD 55

Query: 336 HARVV--MDICEQHEQEISFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYS--VESKMQK 389
              V   +   +  E+  S+  VEG     ++         G   T + ++   +     
Sbjct: 56  GGTVRERLLALDDAERRYSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGL 115

Query: 390 NSLLSEAIMEEVI 402
              L+ A +  V 
Sbjct: 116 TDELARAFLTGVY 128

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	663
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.9
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.85
PRK10724	158	hypothetical protein; Provisional	99.84
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.77
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.74
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.73
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.73
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	99.67
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.62
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	99.59
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.55
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.54
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.54
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.54
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.52
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.51
cd08906	209	START_STARD3-like Cholesterol-binding START domain	99.45
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.43
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.4
cd08905	209	START_STARD1-like Cholesterol-binding START domain	99.38
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	99.35
cd08874	205	START_STARD9-like C-terminal START domain of mamma	99.34
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.32
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.3
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.3
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.28
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	99.28
cd08871	222	START_STARD10-like Lipid-binding START domain of m	99.26
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	99.24
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	99.23
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	99.17
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	99.16
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	99.15
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.15
cd08913	240	START_STARD14-like Lipid-binding START domain of m	99.13
cd08872	235	START_STARD11-like Ceramide-binding START domain o	99.12
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.11
cd00177	193	START Lipid-binding START domain of mammalian STAR	99.07
cd08914	236	START_STARD15-like Lipid-binding START domain of m	99.05
COG5637	217	Predicted integral membrane protein [Function unkn	99.03
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	99.03
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	99.03
smart00234	206	START in StAR and phosphatidylcholine transfer pro	98.98
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	98.92
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	98.81
PF01852	206	START: START domain; InterPro: IPR002913 START (St	98.79
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	98.75
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	98.74
cd08908	204	START_STARD12-like C-terminal lipid-binding START	98.71
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	98.65
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	98.64
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.62
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.61
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.59
cd08904	204	START_STARD6-like Lipid-binding START domain of ma	98.52
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	98.5
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.5
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.49
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	98.44
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	98.41
cd08909	205	START_STARD13-like C-terminal lipid-binding START	98.38
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	98.3
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.3
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	98.29
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.28
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.24
PRK10724	158	hypothetical protein; Provisional	98.15
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.12
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	98.11
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.11
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.05
cd08902	202	START_STARD4-like Lipid-binding START domain of ma	98.05
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	98.04
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	98.02
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.0
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	97.99
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	97.98
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	97.9
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	97.89
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	97.88
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	97.87
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	97.84
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	97.52
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	97.48
cd08906	209	START_STARD3-like Cholesterol-binding START domain	97.47
cd08907	205	START_STARD8-like C-terminal lipid-binding START d	97.35
COG3832	149	Uncharacterized conserved protein [Function unknow	97.26
cd08905	209	START_STARD1-like Cholesterol-binding START domain	97.25
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	97.21
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	97.19
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.13
cd08871	222	START_STARD10-like Lipid-binding START domain of m	97.13
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	96.97
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	96.95
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	96.82
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	96.39
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	96.26
KOG2761	219	consensus START domain-containing proteins involve	96.12
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	96.05
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	95.86
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	95.65
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	95.38
cd00177	193	START Lipid-binding START domain of mammalian STAR	95.25
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	95.21
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	95.15
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	95.14
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	95.12
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	95.05
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	94.35
cd08874	205	START_STARD9-like C-terminal START domain of mamma	94.04
cd08913	240	START_STARD14-like Lipid-binding START domain of m	93.87
cd08872	235	START_STARD11-like Ceramide-binding START domain o	93.71
COG4276	153	Uncharacterized conserved protein [Function unknow	93.41
PF01852	206	START: START domain; InterPro: IPR002913 START (St	92.14
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	92.03
cd08904	204	START_STARD6-like Lipid-binding START domain of ma	91.51
smart00234	206	START in StAR and phosphatidylcholine transfer pro	90.86
cd08908	204	START_STARD12-like C-terminal lipid-binding START	89.85
cd08864	208	SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-	89.21
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	88.43
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	87.55
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	87.41
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	85.95
cd08914	236	START_STARD15-like Lipid-binding START domain of m	85.69
cd08902	202	START_STARD4-like Lipid-binding START domain of ma	82.33
PF01388	92	ARID: ARID/BRIGHT DNA binding domain; InterPro: IP	81.79

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.90  E-value=2e-22  Score=184.76  Aligned_cols=141  Identities=44%  Similarity=0.737  Sum_probs=124.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeC--CCeEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH--EQEISFE  354 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~p--prrIsfr  354 (663)
                      |++++.|+|||++||++|+|+++||+|+|.|.+++++++.++..++++.+..+++...+..++++++.+.+  ++.+.|.
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~   80 (144)
T cd08866           1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE   80 (144)
T ss_pred             CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence            46899999999999999999999999999999999998877777777766665555456666677766644  6899999


Q ss_pred             EEecCCceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          355 QVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       355 ~VeGdFr~f~G~WtLeplgd-GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +++|+|..+.|.|+|++.++ ++|+|+|+++++|.  +++|.++++.++++.+..+|++||++||+
T Consensus        81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~--~~~p~~l~~~~~~~~~~~~l~~lr~~ae~  144 (144)
T cd08866          81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPD--FFAPVFLVEFVLRQDLPTNLLAIRAEAES  144 (144)
T ss_pred             EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999987 68999999999985  57999999999999999999999999985

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.85  E-value=2.6e-20  Score=170.87  Aligned_cols=135  Identities=22%  Similarity=0.380  Sum_probs=114.5

Q ss_pred             EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041          278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV  356 (663)
Q Consensus       278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprrIsfr~V  356 (663)
                      +.++.|+||+++||++++|+++||+|+|+|.+++++++.++...++.. +..+ +-..+..+    +...++++|.|.++
T Consensus         2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~i~~~~~   76 (138)
T cd07813           2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGG-IRESFTSR----VTLVPPESIEAELV   76 (138)
T ss_pred             eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeecc-ccEEEEEE----EEecCCCEEEEEec
Confidence            578999999999999999999999999999999999988776544432 3222 12334443    33346889999999


Q ss_pred             ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          357 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       357 eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +|+|+.++|.|+|++.++|+|+|+|.++++|+  +++|.++++.++.+.+..+|.+|+++|++
T Consensus        77 ~g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~l~~f~~~~~~  137 (138)
T cd07813          77 DGPFKHLEGEWRFKPLGENACKVEFDLEFEFK--SRLLEALAGLVFDEVAKKMVDAFEKRAKQ  137 (138)
T ss_pred             CCChhhceeEEEEEECCCCCEEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999889999999999995  78999999999999999999999999976

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>PRK10724 hypothetical protein; Provisional

Probab=99.84  E-value=1.1e-19  Score=175.00  Aligned_cols=141  Identities=15%  Similarity=0.272  Sum_probs=125.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEE-EEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~-q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      +++.+++|++|+++||+++.|+++||+|+|+|++++|+++.++..+.. ..++.++ ...|++++++    .++++|.|.
T Consensus        16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~-~~~f~srv~~----~~~~~I~~~   90 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI-SKTFTTRNQL----TSNQSILMQ   90 (158)
T ss_pred             eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc-cEEEEEEEEe----cCCCEEEEE
Confidence            689999999999999999999999999999999999999988876554 4566664 4677776554    477899999


Q ss_pred             EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          355 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       355 ~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      +++|+|+.+.|.|+|+|.++++|+|+|.++++++  .+++..+++.++.+....+++||++||+++|+.
T Consensus        91 ~~~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~--s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~  157 (158)
T PRK10724         91 LVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFT--NKLIELAFGRVFKELASNMVQAFTVRAKEVYSA  157 (158)
T ss_pred             ecCCChhhccceEEEEECCCCCEEEEEEEEEEEc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999998778999999999984  789999999999999999999999999999874

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.77  E-value=1.5e-17  Score=152.18  Aligned_cols=137  Identities=23%  Similarity=0.357  Sum_probs=109.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEE--EEEeccceeEEEEEEEEEEEEeeeC-CCeEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI--LQEGCKGLLYMVLHARVVMDICEQH-EQEISF  353 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv--~q~g~~gll~~~~~~rvVLDV~E~p-prrIsf  353 (663)
                      ++.+++|+||+++||++|+|+++||+|+|+ .+++++...++...+  +..+..+.. +.+...    ....+ +++|.|
T Consensus         1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~----~~~~~~~~~i~~   74 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSR----RVLDPEGRRIVF   74 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEE----EEEcCCCCEEEE
Confidence            357899999999999999999999999999 888888765554323  344434432 334322    12234 789999


Q ss_pred             EEEe--cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          354 EQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       354 r~Ve--GdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .+..  |+|..+.|.|+|++.++++|+|+|++++++....+++..++.+.+.+.+..+|++||+++|.
T Consensus        75 ~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  142 (142)
T cd08861          75 RQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER  142 (142)
T ss_pred             EEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence            9987  88899999999999987789999999999864456788899999999999999999999984

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.74  E-value=1e-16  Score=151.92  Aligned_cols=139  Identities=17%  Similarity=0.375  Sum_probs=110.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE---EeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q---~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ++.+|+|+|||++||++++|+++||+|+|.|++++++++.+.......   ....+. ...|+++++++   .+..+|.|
T Consensus         3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~-~~~w~s~~~~~---~~~~~i~~   78 (146)
T cd08860           3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT-VWSWVSERTLD---PVNRTVRA   78 (146)
T ss_pred             ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE-EEEEEEEEEec---CCCcEEEE
Confidence            567999999999999999999999999999999999998766543321   111333 35565543332   23456888


Q ss_pred             EEE-ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          354 EQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       354 r~V-eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      +.. .|+|..+.|.|+|++.++| |+|+|.++++...+.+++..++.+.+.+++...|++||++||+.
T Consensus        79 ~~~~~~p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~  145 (146)
T cd08860          79 RRVETGPFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA  145 (146)
T ss_pred             EEecCCCcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence            433 4789999999999999775 99999999997644577788999999999999999999999974

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.73  E-value=4.6e-17  Score=147.07  Aligned_cols=125  Identities=34%  Similarity=0.581  Sum_probs=102.7

Q ss_pred             EcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCeEEEEEEecCCc
Q 006041          283 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFD  361 (663)
Q Consensus       283 I~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGdFr  361 (663)
                      |+||+++||++++||++||+|+|+|.+++++++.++.+++... ...+ ....|..+    +.+.++..|.+.++.|+|+
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~g~~~   75 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGG-IKRSWTSR----VTEDPPERIRFEQISGPFK   75 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTT-TCEEEEEE----EEEECTTTEEEESSETTEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCC-EEEEEEEE----EEEEEeeeeeeeecCCCch
Confidence            7899999999999999999999999999999998886655433 3333 23455554    3344566699999999999


Q ss_pred             eeEEEEEEEEcCC----CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 006041          362 SFQGKWLFEQLGS----HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR  414 (663)
Q Consensus       362 ~f~G~WtLeplgd----GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR  414 (663)
                      .+.|.|+|++.++    .+|+|+|.++++|  ++++|.++++.++++.++.++++||
T Consensus        76 ~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   76 SFEGSWRFEPLGGNEGGTRTRVTYDYEVDP--PGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             EEEEEEEEEEETTECCEEEEEEEEEEEEET--SSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcEEEEEEEECCCCcCCCEEEEEEEEEEec--CcHhHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999984    3578888888877  4789999999999999999999986

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.73  E-value=2e-16  Score=142.92  Aligned_cols=134  Identities=19%  Similarity=0.295  Sum_probs=106.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEE--EEEE-EeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV--RILQ-EGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~v--rv~q-~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +++.++.|+||+++||++|+|+++||+|+|+|.+++++...++..  ..+. .+..+   .  ...++.++...++.+|.
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~i~   77 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG---I--KDTYALEYTWDGAGSVS   77 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee---E--EEEEEEEEEEcCCCcEE
Confidence            478999999999999999999999999999999999986543322  1121 12111   1  22333445444567899


Q ss_pred             EEEEecC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          353 FEQVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       353 fr~VeGd-Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      |+..+|. +..+.|.|+|++.++ +|+|+|++++++.  +++|.++++.+.+.....++++|+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~  140 (140)
T cd07819          78 WTLVEGEGNRSQEGSYTLTPKGD-GTRVTFDLTVELT--VPLPGFLKRKAEPLVLDEALKGLKKRV  140 (140)
T ss_pred             EEEecccceeEEEEEEEEEECCC-CEEEEEEEEEEec--CCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence            9999876 668899999999987 6999999999984  689999999999999999999999864

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=99.67  E-value=7.5e-16  Score=146.04  Aligned_cols=141  Identities=20%  Similarity=0.361  Sum_probs=121.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEE-EEEeccceeEEEEEEEEEEEEeeeCCC-eEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQEGCKGLLYMVLHARVVMDICEQHEQ-EISF  353 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv-~q~g~~gll~~~~~~rvVLDV~E~ppr-rIsf  353 (663)
                      ++..+..|+++|+++|+++.|++.||+|+|+|..++|+++.+..+.. ..++.+++- ..|++++++.    ++. .|..
T Consensus         3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~-e~F~Trv~~~----~~~~~I~~   77 (146)
T COG2867           3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIR-ETFTTRVTLK----PTARSIDM   77 (146)
T ss_pred             eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhee-eeeeeeeeec----Cchhhhhh
Confidence            47788999999999999999999999999999999999998877644 334666642 5566665543    554 8999


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      ..++|+|+.+.|.|+|.|+++++|.|++.+++++.  ..+.+.++...+......+.+|+.+||...++.
T Consensus        78 ~l~~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~--s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~  145 (146)
T COG2867          78 KLIDGPFKYLKGGWQFTPLSEDACKVEFFLDFEFK--SRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL  145 (146)
T ss_pred             hhhcCChhhhcCceEEEECCCCceEEEEEEEeeeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999998889999999999985  668888999999999999999999999988764

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.62  E-value=9.3e-15  Score=132.18  Aligned_cols=133  Identities=22%  Similarity=0.311  Sum_probs=102.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  356 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V  356 (663)
                      |+.++.|+||+++||++++|+++||+|+|++.+++++.+.+....+  ....+ ....+..+++   ...+++.|.|...
T Consensus         2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~g-~~~~~~~~v~---~~~~~~~i~~~~~   75 (139)
T cd07817           2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKA--KGPAG-LSVEWDAEIT---EQVPNERIAWRSV   75 (139)
T ss_pred             eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEE--ecCCC-CcEEEEEEEe---ccCCCCEEEEEEC
Confidence            6789999999999999999999999999999999988653222222  11112 1233444321   1246778999988


Q ss_pred             ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch----HHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          357 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS----EAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       357 eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP----~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      .|.+ .+.|.|+|++.++++|+|+|+++++|.  .+++    ..+++..+++.+...|+.||+.||
T Consensus        76 ~~~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE  138 (139)
T cd07817          76 EGAD-PNAGSVRFRPAPGRGTRVTLTIEYEPP--GGAEGAAVAGLLGGEPERQLREDLRRFKQLVE  138 (139)
T ss_pred             CCCC-CcceEEEEEECCCCCeEEEEEEEEECC--cchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            8887 889999999988778999999999985  3333    456889999999999999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=99.59  E-value=7.7e-14  Score=135.77  Aligned_cols=164  Identities=15%  Similarity=0.248  Sum_probs=119.3

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN  318 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn  318 (663)
                      -+|++.++.+|+       +||.+...     +++.+.++++++|++|+++||+++.|++.||+|.|+|..++++++.++
T Consensus        17 ~~W~~~~~~~~v-------~v~~~~~~-----~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~   84 (195)
T cd08876          17 GDWQLVKDKDGI-------KVYTRDVE-----GSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD   84 (195)
T ss_pred             CCCEEEecCCCe-------EEEEEECC-----CCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC
Confidence            369999999999       99999422     233477999999999999999999999999999999999999998665


Q ss_pred             -EEEEEEEeccce-e-EEEEEEEEEEEEeeeCCCeEEEEEEe--c--C-------CceeEEEEEEEEcCCCeEEEEEEEE
Q 006041          319 -KVRILQEGCKGL-L-YMVLHARVVMDICEQHEQEISFEQVE--G--D-------FDSFQGKWLFEQLGSHHTLLKYSVE  384 (663)
Q Consensus       319 -~vrv~q~g~~gl-l-~~~~~~rvVLDV~E~pprrIsfr~Ve--G--d-------Fr~f~G~WtLeplgdGgTrVtYtve  384 (663)
                       ....+....... + ...|........ ...+..+.+...+  .  +       +..+.|.|.|++.++++|+|+|..+
T Consensus        85 ~~~i~~~~~~~p~pvs~Rdfv~~~~~~~-~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~  163 (195)
T cd08876          85 NERSVYTVIDLPWPVKDRDMVLRSTTEQ-DADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAY  163 (195)
T ss_pred             CcEEEEEEEecccccCCceEEEEEEEEE-cCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEE
Confidence             333332211110 0 011111111111 0112333333222  1  1       3577899999999888999999999


Q ss_pred             EEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          385 SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       385 ~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      ++|+  +++|.++++.++++.+..++++|+++|
T Consensus       164 ~dp~--g~iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         164 ADPG--GSIPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             eCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9985  789999999999999999999999987

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.55  E-value=1.4e-13  Score=123.16  Aligned_cols=136  Identities=21%  Similarity=0.346  Sum_probs=99.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC--EEEEE-EEeccceeEEEEEEEEEEEEee-eCCCeEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN--KVRIL-QEGCKGLLYMVLHARVVMDICE-QHEQEIS  352 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn--~vrv~-q~g~~gll~~~~~~rvVLDV~E-~pprrIs  352 (663)
                      |+.++.|+||+++||++|+|+++|++|+|.+.+++++...+.  +..+. .....+. .+.+..+    +++ .+++.+.
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~----v~~~~p~~~~~   75 (140)
T cd08865           1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGR-RIELTYE----ITEYEPGRRVV   75 (140)
T ss_pred             CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCc-eEEEEEE----EEEecCCcEEE
Confidence            356889999999999999999999999999999998864322  11221 2222221 1223332    232 4778999


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      |....|++. +.+.|+|++.++ +|+|+|+.++++.....+...++...++..+...|++|++++|+
T Consensus        76 ~~~~~~~~~-~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  140 (140)
T cd08865          76 FRGSSGPFP-YEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA  140 (140)
T ss_pred             EEecCCCcc-eEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence            998777664 699999999876 69999999998632122345678889999999999999999884

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.54  E-value=2.4e-13  Score=123.37  Aligned_cols=138  Identities=12%  Similarity=0.195  Sum_probs=100.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE-EeccceeEEEEEEEEEEEEee-eCCCeEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICE-QHEQEIS  352 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q-~g~~gll~~~~~~rvVLDV~E-~pprrIs  352 (663)
                      ++++.++.|+|||++||++|+|+++|++|+|+|.+++++..  +...+.. .+..+ +...+...  ..+.+ .+++++.
T Consensus         1 m~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~   75 (144)
T cd05018           1 MKISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKVGP-VKGTFKGK--VELSDLDPPESYT   75 (144)
T ss_pred             CeeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEEcc-EEEEEEEE--EEEEecCCCcEEE
Confidence            35889999999999999999999999999999999988752  3332221 12221 11233322  23333 3457888


Q ss_pred             EEEEe-cC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          353 FEQVE-GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       353 fr~Ve-Gd--Fr~f~G~WtLeplgdGgTrVtYtve~eP~~g-g~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      +.... |.  +..+.+.|+|++. +++|+|+|++++++++. ..++.++++..+++.+...+++||++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~  144 (144)
T cd05018          76 ITGEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG  144 (144)
T ss_pred             EEEEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            87653 22  5688999999998 56799999999997521 1247888999999999999999998863

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.54  E-value=2.8e-13  Score=121.52  Aligned_cols=132  Identities=19%  Similarity=0.333  Sum_probs=103.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC--CEEE-EEEEeccceeEEEEEEEEEEEEee-eCC-Ce
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVR-ILQEGCKGLLYMVLHARVVMDICE-QHE-QE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g--n~vr-v~q~g~~gll~~~~~~rvVLDV~E-~pp-rr  350 (663)
                      +++.++.|+||+++||++++|+++|+.|+|.+.+++++...+  +..+ ++..  .+   ..+..+    +.+ .++ ++
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~--~g---~~~~~~----i~~~~~~~~~   72 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLK--DG---GTVRER----LLALDDAERR   72 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeC--CC---CEEEEE----ehhcCccCCE
Confidence            478899999999999999999999999999999999887542  2222 2222  11   112222    222 355 89


Q ss_pred             EEEEEEec--CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          351 ISFEQVEG--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       351 Isfr~VeG--dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      |.|....|  ++..+.|.|+|++.++++|+|+|++.+++.  ++++.++++..+.+.+...|++|+++++
T Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~~~  140 (140)
T cd07821          73 YSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPP--EGLTDELARAFLTGVYRAGLAALKAALE  140 (140)
T ss_pred             EEEEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecC--CCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999875  345789999999998878999999999985  3477889999999999999999999875

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.54  E-value=1.9e-12  Score=116.27  Aligned_cols=136  Identities=21%  Similarity=0.332  Sum_probs=103.2

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeC-CCeEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH-EQEISFE  354 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~p-prrIsfr  354 (663)
                      +++.++.|+||+++||++|+|++++++|.|.+..++++...+......... .+.  ..++.++ +++  .+ ++.+.|+
T Consensus         3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~~~~~i-~~~--~~~~~~~~~~   76 (139)
T PF10604_consen    3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRV-AGR--GTVREEI-TEY--DPEPRRITWR   76 (139)
T ss_dssp             EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEE-CSC--SEEEEEE-EEE--ETTTTEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEe-ccc--cceeEEE-EEe--cCCCcEEEEE
Confidence            588999999999999999999999999999999999887444433111111 111  1122221 122  35 7999999


Q ss_pred             EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          355 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       355 ~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      ...+.+..+.+.|+|++.++| |+|+++.++++...+++...++...++..+...|++|++.+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E  139 (139)
T PF10604_consen   77 FVPSGFTNGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE  139 (139)
T ss_dssp             EESSSSCEEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecceeEEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            864555677999999999876 999999999973345677778999999999999999999987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.52  E-value=4.9e-13  Score=123.69  Aligned_cols=137  Identities=20%  Similarity=0.244  Sum_probs=99.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee------cCCEEEEEEEeccceeEEEEEEEEEEEEee-eCC
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR------ENNKVRILQEGCKGLLYMVLHARVVMDICE-QHE  348 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer------~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pp  348 (663)
                      .++.++.|+||+++||++++|+++||+|+|++..+..+..      .+.+.++...+........+      .+.+ .++
T Consensus         3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~------~v~~~~p~   76 (150)
T cd07818           3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM------EITESVPN   76 (150)
T ss_pred             EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE------EEEecCCC
Confidence            5889999999999999999999999999999987654322      11122222222221100111      1222 367


Q ss_pred             CeEEEEEEe-cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc--chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          349 QEISFEQVE-GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       349 rrIsfr~Ve-GdFr-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~--LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +++.|+... |++. .+.+.|+|++.++ +|+|+|++++++....+  +...++.+.+++++...|++||+++|+
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  150 (150)
T cd07818          77 ERIEYELRFIKPFEATNDVEFTLEPVGG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK  150 (150)
T ss_pred             cEEEEEEEecCCccccceEEEEEEEcCC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            899999885 6775 7899999999955 69999999998642211  345678999999999999999999985

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.51  E-value=7.7e-13  Score=119.51  Aligned_cols=137  Identities=15%  Similarity=0.106  Sum_probs=100.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeec-CCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~-gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ++++.++.|+||++.||++++|+++|++|+|++.+++++... +.+.++......+   ..+...+ .+  ..+++++.|
T Consensus         1 ~~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i-~~--~~p~~~~~~   74 (138)
T cd08862           1 MKFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTV-TE--LRPGHSFTW   74 (138)
T ss_pred             CEEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEE-EE--ecCCCEEEE
Confidence            368899999999999999999999999999999999988654 2222332222111   1122221 12  236789999


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .... +.....+.|+|++.++++|+|+|+.++... ..++...++.+.++..+...|++||+.+|.
T Consensus        75 ~~~~-~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  138 (138)
T cd08862          75 TGPA-PGISAVHRHEFEAKPDGGVRVTTSESLSGP-LAFLFGLFVGKKLRALLPEWLEGLKAAAEQ  138 (138)
T ss_pred             EecC-CCEEEEEEEEEEEcCCCcEEEEEEEEeecc-hHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence            8654 333557899999987678999999888742 123446789999999999999999999874

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=99.45  E-value=1.8e-12  Score=129.99  Aligned_cols=158  Identities=8%  Similarity=0.073  Sum_probs=113.9

Q ss_pred             CCceeeccc-ccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFGQV-CRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~~~-~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVW-aVLTDyEnyPeWiP~V~sSrVLer~  316 (663)
                      ++|++.++. +||       +||.+.      +.+....+++++.|++|++++| ++|.|.+.+++|+++|.+++++++-
T Consensus        25 ~~W~l~~~~~~gi-------~V~s~~------~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~   91 (209)
T cd08906          25 ENWKFEKNNDNGD-------TVYTLE------VPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRV   91 (209)
T ss_pred             cCCEEEEecCCCC-------EEEEec------cCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeec
Confidence            589999876 999       999984      3332366799999999999998 6999999999999999999999874


Q ss_pred             C-CEEEEEEE----------eccceeEEEEEEEEEEEEeeeCCCeEEEE---------EEecCCc---eeEEEEEEEE-c
Q 006041          317 N-NKVRILQE----------GCKGLLYMVLHARVVMDICEQHEQEISFE---------QVEGDFD---SFQGKWLFEQ-L  372 (663)
Q Consensus       317 g-n~vrv~q~----------g~~gll~~~~~~rvVLDV~E~pprrIsfr---------~VeGdFr---~f~G~WtLep-l  372 (663)
                      + +...+|..          .++.+....+.        ...+..+...         ..+|.++   .+.|.|.+.+ .
T Consensus        92 ~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~--------~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~  163 (209)
T cd08906          92 DDNTLVSYDVAAGAAGGVVSPRDFVNVRRIE--------RRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS  163 (209)
T ss_pred             cCCcEEEEEEccccccCCCCCCceEEEEEEE--------ecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC
Confidence            4 33323332          11211111110        1111222111         1112232   4578888776 6


Q ss_pred             CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          373 GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       373 gdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +++.|+|+|.++++|+  |.+|.|++|.++.+.+..++.+||++++.
T Consensus       164 ~~~~t~vt~~~~~Dp~--G~lP~~lvN~~~~~~~~~~~~~LR~~~~~  208 (209)
T cd08906         164 NPSVCTFIWILNTDLK--GRLPRYLIHQSLAATMFEFASHLRQRIRD  208 (209)
T ss_pred             CCCceEEEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7778999999999995  78999999999999999999999999864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.43  E-value=3.6e-12  Score=118.86  Aligned_cols=132  Identities=17%  Similarity=0.271  Sum_probs=93.6

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-cCCE--EEE--EEEeccceeEEEEEEEEEEEEee-eCCCe
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-ENNK--VRI--LQEGCKGLLYMVLHARVVMDICE-QHEQE  350 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~gn~--vrv--~q~g~~gll~~~~~~rvVLDV~E-~pprr  350 (663)
                      +.-+..|+||+++||++++|+++||+|+|+|.+++++.. .+..  .++  ...+..+. ...++.    .+++ .+++.
T Consensus         3 ~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~----~v~~~~p~~~   77 (146)
T cd07824           3 FHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPY-RLRFEL----RVTRIEPLSL   77 (146)
T ss_pred             ceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCc-EEEEEE----EEEeecCCcE
Confidence            556788999999999999999999999999999999873 2211  222  11222221 122222    3334 47789


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEecc-----CccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          351 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-----NSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       351 Isfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~-----gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      +.|. ..|++.. .++|+|++.++ +|+|+|+.++++..     -.+++..++...+++.+..++++||++
T Consensus        78 ~~~~-~~g~~~~-~~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~  145 (146)
T cd07824          78 LEVR-ASGDLEG-VGRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR  145 (146)
T ss_pred             EEEE-EEEeeeE-EEEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence            9997 4677765 79999999765 69999999999631     124556677777778888888888875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.40  E-value=1.7e-11  Score=110.11  Aligned_cols=137  Identities=16%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEE-eecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKIL-SRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVL-er~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      |+.++.|+||+++||++++|+++++.|+|.+..++.. -..|.+.........+.. ..+...+ ++  .+++++|.|..
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~v-~~--~~p~~~~~~~~   77 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPP-RSFKPRV-TE--VEPPRRLAWRG   77 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCc-EEEEEEE-EE--EcCCCEeEEEe
Confidence            6789999999999999999999999999999888775 345555544433222111 2222221 12  24679999998


Q ss_pred             EecCCc--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          356 VEGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       356 VeGdFr--~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      ..++..  ...+.|+|++.++++|+|+++..+... ..++..+++...+.+++...+++|+..||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~E  141 (141)
T cd07822          78 GLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL-LAPLVLLGLGRDLRAGFEAMNEALKARAE  141 (141)
T ss_pred             cCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE-EhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence            776533  467899999986678999998776531 22344567889999999999999999886

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=99.38  E-value=1e-11  Score=124.27  Aligned_cols=164  Identities=13%  Similarity=0.133  Sum_probs=116.1

Q ss_pred             CCceeec-ccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFG-QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~-~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVW-aVLTDyEnyPeWiP~V~sSrVLer~  316 (663)
                      ++|++.+ +.+||       .||.+..++    ++  ..++++..|++|+++|+ .++.|++++++|+++|.+++++++-
T Consensus        25 ~~W~~~~~~~~gi-------~v~s~~~~~----~~--k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~i   91 (209)
T cd08905          25 EGWKTEIVAENGD-------KVLSKVVPD----IG--KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRI   91 (209)
T ss_pred             cCCEEEEecCCCC-------EEEEEEcCC----CC--cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhc
Confidence            4899996 58999       999986542    33  66889999999999999 8888999999999999999999874


Q ss_pred             C-CEEEEEEEeccc----eeEEEEEEEEEEEEeeeCCCeEEE-E--------EEecCCc--eeEEEEEEEEcCC--CeEE
Q 006041          317 N-NKVRILQEGCKG----LLYMVLHARVVMDICEQHEQEISF-E--------QVEGDFD--SFQGKWLFEQLGS--HHTL  378 (663)
Q Consensus       317 g-n~vrv~q~g~~g----ll~~~~~~rvVLDV~E~pprrIsf-r--------~VeGdFr--~f~G~WtLeplgd--GgTr  378 (663)
                      + +...+++.....    +-..-|......  .......+.. .        ..+|.++  ...|.|.|+|+++  +.|+
T Consensus        92 d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~--~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~  169 (209)
T cd08905          92 GKDTLITHEVAAETAGNVVGPRDFVSVRCA--KRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTK  169 (209)
T ss_pred             CCCceEEEEEeccCCCCccCccceEEEEEE--EEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceE
Confidence            4 333334321110    000001110000  0011111111 1        1123333  5689999999965  7899


Q ss_pred             EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          379 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       379 VtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      |+|.+.++|+  |.+|.+++|.++.+.+..+|.+||++++.
T Consensus       170 v~~~~~~Dpk--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~  208 (209)
T cd08905         170 LTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRQRMAS  208 (209)
T ss_pred             EEEEEeecCC--CCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence            9999999995  78999999999999999999999999863

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=99.35  E-value=1.6e-11  Score=122.62  Aligned_cols=163  Identities=10%  Similarity=0.092  Sum_probs=120.1

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      .++|++.++.+||       +||.|...     ++....++++..|++|++.+.++|.|.+.|++|+|.|.++++++..+
T Consensus        21 ~~~W~~~~~~~~i-------~v~~r~~~-----~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~   88 (215)
T cd08877          21 SDGWTLQKESEGI-------RVYYKFEP-----DGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLG   88 (215)
T ss_pred             CCCcEEeccCCCe-------EEEEEeCC-----CCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecC
Confidence            3589999999999       99999533     33477899999999999999999999999999999999999887644


Q ss_pred             C-EEEEEEE--------eccceeEEEEEEEEEEEEeeeCCCeE--EE-----------------EEEe-cCCc--eeEEE
Q 006041          318 N-KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQEI--SF-----------------EQVE-GDFD--SFQGK  366 (663)
Q Consensus       318 n-~vrv~q~--------g~~gll~~~~~~rvVLDV~E~pprrI--sf-----------------r~Ve-GdFr--~f~G~  366 (663)
                      . ...+++.        .++.+++ .+..    +..+ .+..+  ..                 ...+ |..+  .+.|.
T Consensus        89 ~~~~v~y~~~~~PwPv~~RD~v~~-~~~~----~~~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~  162 (215)
T cd08877          89 RADKVCYLRVDLPWPLSNREAVFR-GFGV----DRLE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYG  162 (215)
T ss_pred             CceEEEEEEEeCceEecceEEEEE-EEEE----eeec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecce
Confidence            3 2222322        2222211 1110    1010 11212  11                 1122 3332  67899


Q ss_pred             EEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          367 WLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       367 WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      |.|+|.+++.|.++|.+.++|+ +.++|.|+++.+.++.+..++.+|++.+++
T Consensus       163 ~~i~p~~~~~t~v~~~~~~DP~-g~~IP~~liN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         163 FVITPISPTKCYLRFVANVDPK-MSLVPKSLLNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             EEEEEcCCCCeEEEEEEEcCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999995 345999999999999999999999999875

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=99.34  E-value=2.4e-11  Score=122.05  Aligned_cols=166  Identities=11%  Similarity=0.127  Sum_probs=112.7

Q ss_pred             ccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041          236 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR  315 (663)
Q Consensus       236 ~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer  315 (663)
                      ++.++|++.++.+||       +||.+      +.++....+.++.+|++|+++||++|.|.+++++|.+.+.++++++.
T Consensus        19 ~~~~gW~l~~~~~gI-------~Vy~k------~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~   85 (205)
T cd08874          19 QATAGWSYQCLEKDV-------VIYYK------VFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKT   85 (205)
T ss_pred             hccCCcEEEecCCCE-------EEEEe------cCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeee
Confidence            445799999999999       99999      33444456888999999999999999999999999999999999987


Q ss_pred             cCCEEE-EEEEecccee----EEEEEEEEEEEEeeeCCCeEEEEEEe---------cCCc--eeEEEEEEEEc---CCCe
Q 006041          316 ENNKVR-ILQEGCKGLL----YMVLHARVVMDICEQHEQEISFEQVE---------GDFD--SFQGKWLFEQL---GSHH  376 (663)
Q Consensus       316 ~gn~vr-v~q~g~~gll----~~~~~~rvVLDV~E~pprrIsfr~Ve---------GdFr--~f~G~WtLepl---gdGg  376 (663)
                      -++... ++++.-....    ..-|....+. ..+....-|..+.++         |.++  .+.|.|.++|+   +++.
T Consensus        86 ~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~-~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~  164 (205)
T cd08874          86 FTEDICLVYLVHETPLCLLKQPRDFCCLQVE-AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQY  164 (205)
T ss_pred             cCCCeEEEEEEecCCCCCCCCCCeEEEEEEE-EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCc
Confidence            554433 3432111100    0001111000 001111112222222         2233  67899999999   8889


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          377 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       377 TrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      |+|+|.++++|+ |+-+|.|++|.++.+.... +..|+.++
T Consensus       165 t~vty~~q~DPg-gg~iP~~l~N~~~~~~p~~-~~~~~~~~  203 (205)
T cd08874         165 TRVIYIAQVALC-GPDVPAQLLSSLSKRQPLV-IARLALFL  203 (205)
T ss_pred             EEEEEEEEECCC-CCCCCHHHHhHHHHhccHH-HHHHHHHh
Confidence            999999999995 3679999999998876543 34444443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.32  E-value=5.4e-11  Score=111.00  Aligned_cols=133  Identities=11%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE-EeccceeEEEEEEEEEEEEeee--CCCeEEEE
Q 006041          278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQ--HEQEISFE  354 (663)
Q Consensus       278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q-~g~~gll~~~~~~rvVLDV~E~--pprrIsfr  354 (663)
                      +.++.|+|||++||++|+|+++|+.|+|++...+++.  ++...... ....++ ...|..++  ++.+.  +++++.+.
T Consensus         2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~--~~~~~~~~~~~~~~~   76 (146)
T cd07823           2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGPI-SASFKGTA--RLLEDDEAARRAVLE   76 (146)
T ss_pred             CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEccE-EEEEEEEE--EEEeccCCCcEEEEE
Confidence            5688999999999999999999999999999988753  23322211 122221 23343333  34443  56788776


Q ss_pred             EEecCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHH---HHHHHHHhhHHHHHHHHHHHHH
Q 006041          355 QVEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA---IMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       355 ~VeGdFr-----~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~---L~er~vre~L~~~L~ALR~RAE  418 (663)
                      ....+..     .....|+|.+. +++|+|+|.+++++.  ++++..   ++.+..++.+...+++|++++|
T Consensus        77 ~~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~--g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e  145 (146)
T cd07823          77 ATGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALT--GKLAQFGRGGIGDVAGRLLAQFAANLEARLA  145 (146)
T ss_pred             EEEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEe--eEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence            4431111     35668999984 467999999999874  555443   4777777777888888888876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.30  E-value=7.3e-11  Score=106.55  Aligned_cols=134  Identities=17%  Similarity=0.147  Sum_probs=96.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCCeEEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEISFEQ  355 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pprrIsfr~  355 (663)
                      +..++.|+||+++||++|+|++++|+|+|++..+.+....|+..+....+..+.. ..+..    ++++ .++++|.|+.
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~-~~~~~----~i~~~~~~~~i~~~~   76 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEE-GWVSG----EVLEVEPPRRLVFTW   76 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCE-EeccE----EEEEEcCCCeEEEEe
Confidence            6788999999999999999999999999985555554445554443333222111 11222    2222 4678999998


Q ss_pred             EecC---CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          356 VEGD---FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       356 VeGd---Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ..++   +....+.|+|++.++ +|+|+|+.++.+.   ..+...+...+++....+|..||+.+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~lk~~~E~  139 (139)
T cd07814          77 AFSDETPGPETTVTVTLEETGG-GTRLTLTHSGFPE---EDAEQEAREGMEEGWTGTLDRLKALLEK  139 (139)
T ss_pred             cccCCCCCCceEEEEEEEECCC-CEEEEEEEEccCh---HhHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence            8763   457789999999984 6999999988763   1224567778888999999999999984

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=8.8e-11  Score=108.45  Aligned_cols=106  Identities=23%  Similarity=0.323  Sum_probs=80.6

Q ss_pred             EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCE----EEEE-EEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK----VRIL-QEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~----vrv~-q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +.++.|+||+++||++++|.++++.|+|.+.+++++...++.    .++. .....++ .+.|..+++   ...+++.+.
T Consensus         2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~-~~~w~~~it---~~~p~~~f~   77 (137)
T cd07820           2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGI-PQRWTTEIT---EVEPPRRFV   77 (137)
T ss_pred             eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCC-ceEEEEEEE---EEcCCCeEE
Confidence            568899999999999999999999999999999998644322    1121 1111121 134554432   123578999


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEec
Q 006041          353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ  388 (663)
Q Consensus       353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~  388 (663)
                      |.++.|++..+.++|+|++.++ +|+|+++++++++
T Consensus        78 ~~~~~G~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p  112 (137)
T cd07820          78 DEQVSGPFRSWRHTHRFEAIGG-GTLMTDRVEYRLP  112 (137)
T ss_pred             EEeccCCchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence            9999999998999999999876 6999999999974

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.28  E-value=2.2e-10  Score=99.15  Aligned_cols=136  Identities=24%  Similarity=0.319  Sum_probs=94.5

Q ss_pred             EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041          278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV  356 (663)
Q Consensus       278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprrIsfr~V  356 (663)
                      +.++.|+||+++||++++|+++|++|+|.+..++++............ .........+...++  . ..++..+.|...
T Consensus         2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~~~~~~~~   78 (141)
T cd07812           2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVT--E-VDPPRPGRFRVT   78 (141)
T ss_pred             cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEE--E-ecCCCceEEEEe
Confidence            568899999999999999999999999999999988754332211111 100001112222221  1 124578888888


Q ss_pred             ecCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHH
Q 006041          357 EGDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       357 eGdFr-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~-LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      .+++. .+.+.|.|++.++++|+|++.+.+.+..... ++..++.+.+++.+...+.+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T cd07812          79 GGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR  140 (141)
T ss_pred             cCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence            77655 7899999999976579999999999752111 356678888888888888777654

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=99.28  E-value=1.9e-10  Score=114.35  Aligned_cols=163  Identities=15%  Similarity=0.218  Sum_probs=115.4

Q ss_pred             CCceeecccc-cCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHH-HHhccCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFGQVC-RLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~~~~-gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWa-VLTDyEnyPeWiP~V~sSrVLer~  316 (663)
                      ++|++.++.+ ||       .||.|...      +..+.++++.+|++|+++|++ ++.|++..++|.+.|.+++++++-
T Consensus        24 ~~W~l~~~~~~~i-------~i~~r~~~------~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~   90 (208)
T cd08868          24 PGWKLEKNTTWGD-------VVYSRNVP------GVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVI   90 (208)
T ss_pred             CCceEEEecCCCC-------EEEEEEcC------CCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEe
Confidence            3899999998 99       99999644      223568899999999999985 778999999999999999999875


Q ss_pred             CC-EEEEEEEecc---ceeE-EEEEEEEEEEEeeeCCCe--EEEEEE--------ecCCc--eeEEEEEEEEcCC--CeE
Q 006041          317 NN-KVRILQEGCK---GLLY-MVLHARVVMDICEQHEQE--ISFEQV--------EGDFD--SFQGKWLFEQLGS--HHT  377 (663)
Q Consensus       317 gn-~vrv~q~g~~---gll~-~~~~~rvVLDV~E~pprr--Isfr~V--------eGdFr--~f~G~WtLeplgd--GgT  377 (663)
                      ++ ...++.....   .++. .-|..   +......+..  |....+        +|.++  .+.|.|.|+|.++  ++|
T Consensus        91 d~~~~i~y~~~~~~~~~~vs~RDfV~---~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t  167 (208)
T cd08868          91 DDNTDISYQVAAEAGGGLVSPRDFVS---LRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKC  167 (208)
T ss_pred             cCCcEEEEEEecCcCCCcccccceEE---EEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCce
Confidence            43 3333332111   0000 00000   0000011111  222222        23343  4679999999864  679


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .|+|.++++|+  |++|.|++|.++...+..++.+||+++++
T Consensus       168 ~v~~~~~~Dp~--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~  207 (208)
T cd08868         168 NFTWLLNTDLK--GWLPQYLVDQALASVLLDFMKHLRKRIAT  207 (208)
T ss_pred             EEEEEEEECCC--CCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence            99999999995  88999999999999999999999999875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=99.26  E-value=3.2e-10  Score=113.78  Aligned_cols=165  Identities=12%  Similarity=0.090  Sum_probs=119.1

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      .+|++..+.+||       .||.+...     ++....++++..+ ++|+++++++|.|.+..++|.++|.++++++.-+
T Consensus        23 ~~W~~~~~~~gi-------~iy~r~~~-----~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d   90 (222)
T cd08871          23 DGWKLKYNKNNV-------KVWTKNPE-----NSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLN   90 (222)
T ss_pred             CCcEEEEcCCCe-------EEEEeeCC-----CCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcC
Confidence            489999999999       99999422     2345678888887 6999999999999999999999999999997743


Q ss_pred             C--EEEEEEE-------eccceeEEEEEEEEEEEEeeeCCC-eEEEEE--------EecCCc--eeEEEEEEEEcCCCeE
Q 006041          318 N--KVRILQE-------GCKGLLYMVLHARVVMDICEQHEQ-EISFEQ--------VEGDFD--SFQGKWLFEQLGSHHT  377 (663)
Q Consensus       318 n--~vrv~q~-------g~~gll~~~~~~rvVLDV~E~ppr-rIsfr~--------VeGdFr--~f~G~WtLeplgdGgT  377 (663)
                      .  .+..+..       +++-++...+        ...... .+....        .+|.++  .+.+.|.|++.++++|
T Consensus        91 ~~~~i~y~~~~~P~pvs~RDfV~~r~~--------~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t  162 (222)
T cd08871          91 PNNDIGYYSAKCPKPLKNRDFVNLRSW--------LEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGC  162 (222)
T ss_pred             CCCEEEEEEeECCCCCCCCeEEEEEEE--------EeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCE
Confidence            3  3322211       1221111000        001111 111111        123344  4578899999988889


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041          378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS  425 (663)
Q Consensus       378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~  425 (663)
                      +|+|..+++|+  |++|.+++|.++....+.+|++|++.+++...=+.
T Consensus       163 ~vt~~~~~Dp~--G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~  208 (222)
T cd08871         163 TLTYVTQNDPK--GSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKA  208 (222)
T ss_pred             EEEEEEecCCC--CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999984  78999999999999999999999999998755433

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=99.24  E-value=4.2e-10  Score=112.70  Aligned_cols=166  Identities=13%  Similarity=0.087  Sum_probs=113.9

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcc--cccCcCCcEEEEEee
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETL--PEIVPNLAISKILSR  315 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEny--PeWiP~V~sSrVLer  315 (663)
                      .++|++.++.+||       +||.|.+.   ++.|..  ++++.+|++++++|+++|.|.+++  ++|.+.|.+++++++
T Consensus        21 ~~~W~~~~~~~~i-------~v~~~~~~---~~~~~~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~   88 (208)
T cd08903          21 ESGWKTCRRTNEV-------AVSWRPSA---EFAGNL--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEA   88 (208)
T ss_pred             ccCCEEEEcCCCE-------EEEeeecC---CCCCcE--EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEE
Confidence            3589999999999       99999543   233433  779999999999999999999887  999999999999988


Q ss_pred             cCC-EEEEEEEeccc---ee-EEEEEEEEEEEEeeeCCCeEEEE--EEe--------cCCce----eEEEEEEEEcCCCe
Q 006041          316 ENN-KVRILQEGCKG---LL-YMVLHARVVMDICEQHEQEISFE--QVE--------GDFDS----FQGKWLFEQLGSHH  376 (663)
Q Consensus       316 ~gn-~vrv~q~g~~g---ll-~~~~~~rvVLDV~E~pprrIsfr--~Ve--------GdFr~----f~G~WtLeplgdGg  376 (663)
                      -++ ...++...-..   ++ ..-|.......  ...+..+...  .++        |.++.    +.|.|+..+.++++
T Consensus        89 id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~--~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~  166 (208)
T cd08903          89 ISDDVSVCRTVTPSAAMKIISPRDFVDVVLVK--RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDK  166 (208)
T ss_pred             ecCCEEEEEEecchhcCCCcCCCceEEEEEEE--ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCc
Confidence            544 33333311000   00 00011100000  1122223221  222        22332    45666666656678


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          377 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       377 TrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      |.|+|.+.++|+  |.+|.++++.++.+.+..++.+||+.+.+
T Consensus       167 t~v~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~  207 (208)
T cd08903         167 TQLVSFFQTDLS--GYLPQTVVDSFFPASMAEFYNNLTKAVKA  207 (208)
T ss_pred             eEEEEEEEeccC--CCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence            999999999995  78999999999999999999999998754

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=99.23  E-value=2.6e-10  Score=114.00  Aligned_cols=160  Identities=13%  Similarity=0.043  Sum_probs=116.3

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      ++|++..+.+||       +||.|...     +.+...+++..++ ++|++++++++.|.+..++|.+.+.+++++++..
T Consensus        21 ~~W~l~~~~~~i-------~Vy~r~~~-----~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~   88 (207)
T cd08911          21 DGWEPFIEKKDM-------LVWRREHP-----GTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDP   88 (207)
T ss_pred             CCcEEEEEcCce-------EEEEeccC-----CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccC
Confidence            479999999999       99999432     1335568887767 8999999999999999999999999999998742


Q ss_pred             --CEEEEEEE--------eccceeEEEEEEEEEEEEeeeCCCe--EEEEEEe--------cCCc--eeEEEEEEEEcC--
Q 006041          318 --NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLG--  373 (663)
Q Consensus       318 --n~vrv~q~--------g~~gll~~~~~~rvVLDV~E~pprr--Isfr~Ve--------GdFr--~f~G~WtLeplg--  373 (663)
                        +...+++.        .++.+    +..+  +.... ....  |....++        |.++  .+.|.|.+++.+  
T Consensus        89 ~~~~~i~y~~~~~P~P~s~RD~V----~~r~--~~~~~-~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~  161 (207)
T cd08911          89 ETGSEIIYWEMQWPKPFANRDYV----YVRR--YIIDE-ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF  161 (207)
T ss_pred             CCCCEEEEEEEECCCCCCCccEE----EEEE--EEEcC-CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC
Confidence              32223332        11211    1111  11111 1112  2222222        3444  679999999983  


Q ss_pred             -CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          374 -SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       374 -dGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                       +++|.++|..+.+|  +|.+|.+++|.+..+.++.+|+.|++.+.+
T Consensus       162 ~~~~~~~~~~~~~dP--gG~IP~~lvN~~~~~~~~~~l~~l~~a~~~  206 (207)
T cd08911         162 DEPGFEFVLTYFDNP--GVNIPSYITSWVAMSGMPDFLERLRNAALK  206 (207)
T ss_pred             CCCCeEEEEEEEeCC--CCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence             56799999999998  488999999999999999999999998865

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=99.17  E-value=1.4e-09  Score=108.61  Aligned_cols=159  Identities=8%  Similarity=0.048  Sum_probs=116.2

Q ss_pred             CCceeeccccc----CCCCcccceEEEEeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEE
Q 006041          239 SKWGVFGQVCR----LDRPCFVDEVHLRRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKIL  313 (663)
Q Consensus       239 ~~W~~~~~~~g----i~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVL  313 (663)
                      +.|+...+.+|    |       +||.|...     +.+...+++..++ ++|+++|+++|.|.+..++|.+.|.+.+++
T Consensus        22 ~~W~~~~~k~~~~~~i-------~vy~r~~~-----~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~l   89 (209)
T cd08870          22 QAWQQVMDKSTPDMSY-------QAWRRKPK-----GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETL   89 (209)
T ss_pred             CcceEhhhccCCCceE-------EEEecccC-----CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEE
Confidence            58999999999    9       99999422     2335679999999 569999999999999999999999999999


Q ss_pred             eecCC--EEEEEEE--------eccceeEEEEEEEEEEEEeeeCCCe--EEEEEEe-------cCCc--eeEEEEEEEEc
Q 006041          314 SRENN--KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE-------GDFD--SFQGKWLFEQL  372 (663)
Q Consensus       314 er~gn--~vrv~q~--------g~~gll~~~~~~rvVLDV~E~pprr--Isfr~Ve-------GdFr--~f~G~WtLepl  372 (663)
                      +..++  ...+++.        .++-++...+        ....+..  |....+.       |.++  .+.|.|.+++.
T Consensus        90 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~--------~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~  161 (209)
T cd08870          90 EEDEKSGTEIVRWVKKFPFPLSDREYVIARRL--------WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAV  161 (209)
T ss_pred             EecCCCCcEEEEEEEECCCcCCCceEEEEEEE--------EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEe
Confidence            87654  2223322        1221111100        0110111  1111111       3332  78999999998


Q ss_pred             --CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          373 --GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       373 --gdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                        ++++|.++|+...+|+  |.+|.|++|.++...++.+|++|++.+.+
T Consensus       162 ~~~~~~t~~~~~~~~dp~--G~IP~wlvN~~~~~~~~~~l~~l~~a~~~  208 (209)
T cd08870         162 KGDGQGSACEVTYFHNPD--GGIPRELAKLAVKRGMPGFLKKLENALRK  208 (209)
T ss_pred             cCCCCceEEEEEEEECCC--CCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence              7788999999999984  77999999999999999999999998854

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=99.16  E-value=8.1e-10  Score=109.69  Aligned_cols=164  Identities=16%  Similarity=0.096  Sum_probs=111.7

Q ss_pred             ccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041          236 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR  315 (663)
Q Consensus       236 ~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer  315 (663)
                      +..++|.+..+.+||       +||.+...+    +...+.++++..|+|++++|++++.|..  ++|.+++.+++++++
T Consensus        16 ~~~~~W~~~~~~~gi-------~I~~k~~~~----~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~   82 (197)
T cd08869          16 DKSKGWVSVSSSDHV-------ELAFKKVDD----GHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVET   82 (197)
T ss_pred             hccCCceEEecCCcE-------EEEEEeCCC----CCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEE
Confidence            446799999999999       999995421    2235678999999999999999998863  999999999999987


Q ss_pred             cCC-EEEEEEE-ec-cceeEEEEEEEEEEEEeeeCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 006041          316 ENN-KVRILQE-GC-KGLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLLKY  381 (663)
Q Consensus       316 ~gn-~vrv~q~-g~-~gll~~~~~~rvVLDV~E~ppr--rIsfr~Ve-------GdFr--~f~G~WtLeplgdGgTrVtY  381 (663)
                      -++ ...+++. .. .++...-|...... ....+..  .|.+..++       |.++  .+.|.|.++|+++++|+|+|
T Consensus        83 id~~~~i~y~~~~~p~pv~~RDfV~~r~~-~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty  161 (197)
T cd08869          83 LDEDTEVYQYVTNSMAPHPTRDYVVLRTW-RTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTH  161 (197)
T ss_pred             ecCCcEEEEEEeeCCCCCCCceEEEEEEE-EecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEE
Confidence            543 2233332 11 01100001110000 0001111  23444442       4444  55799999999888999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      .++++|+  |.+|.|++|..- .-+...|..||+-
T Consensus       162 ~~~~Dp~--G~iP~wl~N~~~-~~~~~~~~~l~~~  193 (197)
T cd08869         162 ICRVDLR--GRSPEWYNKVYG-HLCARELLRIRDS  193 (197)
T ss_pred             EEEECCC--CCCCceeecchH-hHHHHHHHHHHhh
Confidence            9999995  789999955554 7788999999874

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=99.15  E-value=5.3e-10  Score=111.97  Aligned_cols=159  Identities=8%  Similarity=0.035  Sum_probs=112.7

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEee--
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSR--  315 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~-APpeqVWaVLTDyEnyPeWiP~V~sSrVLer--  315 (663)
                      ++|++..+.+||       +||.|...     +.+...+++..+++ ++++++++++.|.+.+++|.+.|.++  ++.  
T Consensus        25 ~~W~l~~~~~~i-------~Vy~r~~~-----~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~--~~~~~   90 (207)
T cd08910          25 AAWELLVESSGI-------SIYRLLDE-----QSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKEL--YEKEC   90 (207)
T ss_pred             CCeEEEEecCCe-------EEEEeccC-----CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh--eeecC
Confidence            489999999999       99998422     23355799999998 79999999999999999999999873  333  


Q ss_pred             cCCEEEEEEE-------eccceeEEEEEEEEEEEEeeeCCCeE---E--------EEEEecCCc--eeEEEEEEEEcCCC
Q 006041          316 ENNKVRILQE-------GCKGLLYMVLHARVVMDICEQHEQEI---S--------FEQVEGDFD--SFQGKWLFEQLGSH  375 (663)
Q Consensus       316 ~gn~vrv~q~-------g~~gll~~~~~~rvVLDV~E~pprrI---s--------fr~VeGdFr--~f~G~WtLeplgdG  375 (663)
                      .+..+..+..       .++-++...+.     .. ....+.+   .        +...+|.++  .+.|.|.|++.+++
T Consensus        91 ~~~~i~y~~~k~PwPvs~RD~V~~r~~~-----~~-~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~  164 (207)
T cd08910          91 DGETVIYWEVKYPFPLSNRDYVYIRQRR-----DL-DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK  164 (207)
T ss_pred             CCCEEEEEEEEcCCCCCCceEEEEEEec-----cc-cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC
Confidence            2223322211       12211100000     00 0011111   0        111234444  78999999999888


Q ss_pred             eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          376 HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       376 gTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +|+++|..+.+|+  |.+|.|++|.+..+.++.+|++|+..+.+
T Consensus       165 ~t~i~~~~~~DPg--G~IP~wlvN~~~~~~~~~~l~~l~ka~~~  206 (207)
T cd08910         165 GSKVFMYYFDNPG--GMIPSWLINWAAKNGVPNFLKDMQKACQN  206 (207)
T ss_pred             ceEEEEEEEeCCC--CcchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            8999999999994  88999999999999999999999998864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.15  E-value=7.6e-10  Score=101.56  Aligned_cols=135  Identities=18%  Similarity=0.192  Sum_probs=88.0

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEe-----ecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-----RENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLe-----r~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      +++.++.|+|||+.||++++|+++||+|+|......+..     +.|+..++..... +. .+.+..+++ +  ..++++
T Consensus         1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~-~~~~~~~v~-~--~~p~~~   75 (144)
T cd07825           1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GG-PYRITNHVV-A--FEENRL   75 (144)
T ss_pred             CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcC-CC-ceEEEEEEE-E--ECCCCE
Confidence            378899999999999999999999999998643322221     2333333332221 21 133443322 2  247789


Q ss_pred             EEEEEEe-c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 006041          351 ISFEQVE-G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       351 Isfr~Ve-G-dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L--~er~vre~L~~~L~ALR~RAE  418 (663)
                      |.|.... + ........|+|++.++++|+|+++..+...   .....+  +......++...|..|++.+|
T Consensus        76 l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~---~~~~~~~~~~~~~~~g~~~~l~~L~~~~~  144 (144)
T cd07825          76 IAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAV---TDLKELLGFPAFPEVQLEASLDRLATLAE  144 (144)
T ss_pred             EEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCC---hhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence            9998652 2 223557788999988778999999887642   111222  234467788899999998875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=99.13  E-value=1.2e-09  Score=112.38  Aligned_cols=162  Identities=7%  Similarity=0.032  Sum_probs=106.9

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      .++|.+.++.+||       +||.+.       +.....+++++.|++|+++|+++|.|.+++++|.+++.+++++++-+
T Consensus        58 ~~~W~l~~~~~gI-------~Vyt~~-------~s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id  123 (240)
T cd08913          58 KDNWVLSSEKNQV-------RLYTLE-------EDKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVD  123 (240)
T ss_pred             cCCCEEEEccCCE-------EEEEEe-------CCCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecC
Confidence            3589999999999       999972       12234678889999999999999999999999999999999998744


Q ss_pred             CEEEEEEEeccc----eeEEEEEEEEEEEEeeeCC-C-eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 006041          318 NKVRILQEGCKG----LLYMVLHARVVMDICEQHE-Q-EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY  381 (663)
Q Consensus       318 n~vrv~q~g~~g----ll~~~~~~rvVLDV~E~pp-r-rIsfr~Ve--------GdFr--~f~G~WtLeplgdGgTrVtY  381 (663)
                      ....+++.....    +..--|............. . .|.-.++.        |.++  .+.|.|.|.+.+++.|+|+|
T Consensus       124 ~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY  203 (240)
T cd08913         124 EDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSY  203 (240)
T ss_pred             CCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEE
Confidence            333344421111    0000011100000000001 0 12222222        3333  67899999999988999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHH-HHHHHHHHH
Q 006041          382 SVESKMQKNSLLSEAIMEEVIYEDLP-SNLCAIRDY  416 (663)
Q Consensus       382 tve~eP~~gg~LP~~L~er~vre~L~-~~L~ALR~R  416 (663)
                      ..+.+|   |.+|.++++.++.+... .++.+--+.
T Consensus       204 ~~~~dP---G~LP~~~~N~~~~~~p~~~~~~~~~~~  236 (240)
T cd08913         204 YNQATP---GVLPYISTDIAGLSSEFYSTFSACSQF  236 (240)
T ss_pred             EEEeCC---ccccHHHhhhhhhccchhHHHHHHHHH
Confidence            999987   38999999999887553 444443333

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=99.12  E-value=1.4e-09  Score=111.32  Aligned_cols=172  Identities=13%  Similarity=0.156  Sum_probs=119.2

Q ss_pred             CceeecccccCCCCcccceEEEEeeccccccCCeeE-EEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          240 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHR-CVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       240 ~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r-~VrasIvI~-APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      +|++..+.+||       +||.|..+    .+|..+ .+++..+|+ ++++++.+++.|.+.+.+|..++.+++++++-+
T Consensus        27 ~W~l~~~~~gi-------kVy~r~~~----~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~   95 (235)
T cd08872          27 GWQLFAEEGEM-------KVYRREVE----EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLS   95 (235)
T ss_pred             CCEEEEeCCce-------EEEEEECC----CCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecC
Confidence            89999999999       99999533    233333 589999999 999999999999999999999999999998743


Q ss_pred             -CEEEEEEE--------eccceeEEEEEE--E----------EEEEEee----eCC--CeEEEEEEe-----cCCceeEE
Q 006041          318 -NKVRILQE--------GCKGLLYMVLHA--R----------VVMDICE----QHE--QEISFEQVE-----GDFDSFQG  365 (663)
Q Consensus       318 -n~vrv~q~--------g~~gll~~~~~~--r----------vVLDV~E----~pp--rrIsfr~Ve-----GdFr~f~G  365 (663)
                       +...+++.        .++.++...+..  .          +++....    .|+  ..++.....     +.+..-.|
T Consensus        96 ~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g  175 (235)
T cd08872          96 QDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDG  175 (235)
T ss_pred             CCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCC
Confidence             33334442        222221111110  0          1110000    011  122222110     11112237


Q ss_pred             EEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041          366 KWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS  425 (663)
Q Consensus       366 ~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~  425 (663)
                      .|.|.+ ++++|+|+|..+++|  +|++|.|++|.+.++.++..|+.|-.++.+....+.
T Consensus       176 ~~~~t~-~~~~~~ity~~~~dP--gG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~~~~~~  232 (235)
T cd08872         176 NQEITR-DNILCKITYVANVNP--GGWAPASVLRAVYKREYPKFLKRFTSYVQEKTKGKP  232 (235)
T ss_pred             cccccC-CCCeEEEEEEEEeCC--CCCccHHHHHHHHHhhchHHHHHHHHHHHHhcCCCc
Confidence            799988 577999999999999  489999999999999999999999999987766544

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.11  E-value=2.9e-10  Score=104.31  Aligned_cols=78  Identities=44%  Similarity=0.711  Sum_probs=73.1

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      |.+++.|++|++.||++|+||+++.+|+|.+.+                                               
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~   80 (144)
T cd08866           1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE   80 (144)
T ss_pred             CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence            578999999999999999999999999999888                                               


Q ss_pred             -----------------c-C-CceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 -----------------R-S-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 -----------------~-~-~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                       . + ++|+++|++++.|..++|..+++.++++.++.+|++||++||+
T Consensus        81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~  144 (144)
T cd08866          81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES  144 (144)
T ss_pred             EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                             1 2 4899999999999999999999999999999999999999984

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=99.07  E-value=1.5e-08  Score=96.47  Aligned_cols=160  Identities=12%  Similarity=0.183  Sum_probs=111.8

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN  318 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn  318 (663)
                      .+|+..++.+|+       +||.+..++     .+...++++.+|++|+++|++++.|.+.++.|.+.+..+++++..++
T Consensus        15 ~~W~~~~~~~~v-------~vy~~~~~~-----~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~   82 (193)
T cd00177          15 EGWKLVKEKDGV-------KIYTKPYED-----SGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDE   82 (193)
T ss_pred             CCeEEEEECCcE-------EEEEecCCC-----CCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCC
Confidence            489999999999       999996442     23567999999999999999999999999999999999999987554


Q ss_pred             EE-EEEEEe--ccceeE--EEEEEEEEEEEeeeCCCeEEE--EEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 006041          319 KV-RILQEG--CKGLLY--MVLHARVVMDICEQHEQEISF--EQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY  381 (663)
Q Consensus       319 ~v-rv~q~g--~~gll~--~~~~~rvVLDV~E~pprrIsf--r~Ve--------GdFr--~f~G~WtLeplgdGgTrVtY  381 (663)
                      .. .++..-  -.++-.  +.+... ..   ...+..+.+  ..++        |.++  .+.+.|.|++.+++.|+++|
T Consensus        83 ~~~i~~~~~~~p~p~~~Rdfv~~~~-~~---~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~  158 (193)
T cd00177          83 HTDIIYYKTKPPWPVSPRDFVYLRR-RR---KLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTY  158 (193)
T ss_pred             CeEEEEEEeeCCCccCCccEEEEEE-EE---EcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEE
Confidence            22 222211  000000  111100 00   011122222  1221        2233  33678999999888999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      ...++|+  +.+|.++++..+.+.+...++.++..
T Consensus       159 ~~~~D~~--g~iP~~~~~~~~~~~~~~~~~~~~~~  191 (193)
T cd00177         159 VLQVDPK--GSIPKSLVNSAAKKQLASFLKDLRKA  191 (193)
T ss_pred             EEeeCCC--CCccHHHHHhhhhhccHHHHHHHHHh
Confidence            9999985  78999999999998888887777653

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=99.05  E-value=1.7e-09  Score=110.95  Aligned_cols=161  Identities=13%  Similarity=0.151  Sum_probs=103.2

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      .++|.+..+.+||       +||++      + +.....+++++.+++|+++++++|.|++++++|.+++.+++++++.+
T Consensus        55 ~~~W~l~~dkdgI-------kVytr------~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld  120 (236)
T cd08914          55 KSGWEVTSTVEKI-------KIYTL------E-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVS  120 (236)
T ss_pred             cCCCEEEEccCCE-------EEEEe------c-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeC
Confidence            4699999999999       99999      2 22245799999999999999999999999999999999999998744


Q ss_pred             CEEEEEEEeccceeEEEEEEEEEEEEee--eC-CC---eEEEEEEe--------cCCc--e-eEEEEEEEEcCCCeEEEE
Q 006041          318 NKVRILQEGCKGLLYMVLHARVVMDICE--QH-EQ---EISFEQVE--------GDFD--S-FQGKWLFEQLGSHHTLLK  380 (663)
Q Consensus       318 n~vrv~q~g~~gll~~~~~~rvVLDV~E--~p-pr---rIsfr~Ve--------GdFr--~-f~G~WtLeplgdGgTrVt  380 (663)
                      ....+++.-........-+ .+++....  .. ..   .|..+.+.        |.++  . +.|. .|.++++++|+|+
T Consensus       121 ~~~~vY~~~~pPw~Pvk~R-D~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~Vt  198 (236)
T cd08914         121 EDDQIYHITCPIVNNDKPK-DLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVS  198 (236)
T ss_pred             CCcCEEEEecCCCCCCCCc-eEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEE
Confidence            2222444211110000000 11111110  01 11   12223322        3333  3 6787 9999998999999


Q ss_pred             EEEEEEeccCccchHHHHHHH-HHhhHHHHHHHHHHHH
Q 006041          381 YSVESKMQKNSLLSEAIMEEV-IYEDLPSNLCAIRDYV  417 (663)
Q Consensus       381 Ytve~eP~~gg~LP~~L~er~-vre~L~~~L~ALR~RA  417 (663)
                      |.++++|   |++|-|.+|-. ....+..++.+-.+++
T Consensus       199 Y~~~~dP---g~lp~~~~n~~~~~~~~~~~~~~~~~~~  233 (236)
T cd08914         199 YFNQISA---SILPYFAGNLGGWSKSIEETAASCIQFL  233 (236)
T ss_pred             EEEEcCC---ccchheEEecchhhhHHHHHHHHHHHHH
Confidence            9999998   67888763321 2334444444444443

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=99.03  E-value=2e-09  Score=105.62  Aligned_cols=138  Identities=18%  Similarity=0.224  Sum_probs=105.1

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ...++.+++|++|+++||++..|+|++|.||.++.+++|++...   ..|...-...+.+.|.++++-+   .+..+|.|
T Consensus        69 ~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr---SrW~~~ap~g~~v~Wea~it~d---~~~e~I~W  142 (217)
T COG5637          69 PIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR---SRWKANAPLGLEVEWEAEITKD---IPGERIQW  142 (217)
T ss_pred             ceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc---cceeEcCCCCceEEEeehhhcc---CCCcEEee
Confidence            34578899999999999999999999999999999999996433   2222222233457788875533   36789999


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHH----hhHHHHHHHHHHHHHh
Q 006041          354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIY----EDLPSNLCAIRDYVEK  419 (663)
Q Consensus       354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vr----e~L~~~L~ALR~RAEk  419 (663)
                      +.++|.--...|.-+|++..++.|.|+.++.+.|+  +++...++++++.    +.+...|+.||..+|.
T Consensus       143 ~Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~P--gg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~  210 (217)
T COG5637         143 ESLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPP--GGLLGAVVAKLFGEEPEQQIQDDLERFKEYQEN  210 (217)
T ss_pred             ecCCCCcCCCCccEEeeeCCCCceEEEEEEEecCC--ccHHHHHHHHHhccchHHHHHHHHHHHHHHHHc
Confidence            99999544668999999988888999999999985  3444555555554    5677778888888776

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=99.03  E-value=6.9e-09  Score=106.51  Aligned_cols=137  Identities=13%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      .++|++..+.+||       +||.+      + +.....++++..|++|+++|+++|.|.+++++|.+++.+++++++-+
T Consensus        54 ~~~W~l~~~k~gI-------kVytr------~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id  119 (235)
T cd08873          54 KSDWTVASSTTSV-------TLYTL------E-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVG  119 (235)
T ss_pred             cCCCEEEEcCCCE-------EEEEe------c-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeC
Confidence            3599999999999       99999      3 33355688999999999999999999999999999999999998755


Q ss_pred             CEEE-EEEEecc--ceeEEEEEEEEEEEEeeeCC--CeEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEEE
Q 006041          318 NKVR-ILQEGCK--GLLYMVLHARVVMDICEQHE--QEISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYS  382 (663)
Q Consensus       318 n~vr-v~q~g~~--gll~~~~~~rvVLDV~E~pp--rrIsfr~Ve--------GdFr--~f~G~WtLeplgdGgTrVtYt  382 (663)
                      +... +++..-.  .+-..-|.............  -.|.++.+.        |.++  .+.|.|.|.|+++++|.|+|.
T Consensus       120 ~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~  199 (235)
T cd08873         120 EDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYY  199 (235)
T ss_pred             CCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEE
Confidence            4333 3432111  00000011110000000111  123444444        3333  779999999999889999999


Q ss_pred             EEEEec
Q 006041          383 VESKMQ  388 (663)
Q Consensus       383 ve~eP~  388 (663)
                      .+++|+
T Consensus       200 ~~~dPg  205 (235)
T cd08873         200 NETNPK  205 (235)
T ss_pred             EEcCCC
Confidence            999983

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=99.03  E-value=2.1e-08  Score=99.65  Aligned_cols=162  Identities=14%  Similarity=0.104  Sum_probs=113.3

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhc--cCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTA--YETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTD--yEnyPeWiP~V~sSrVLer~  316 (663)
                      ++|.+.++.+||       +||.+....     .....++++..|++++++|+++|.|  .+..+.|.+.+.+++++++-
T Consensus        22 ~~W~~~~~~~~i-------~v~~~~~~~-----~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~i   89 (206)
T cd08867          22 DGWKVLKTVKNI-------TVSWKPSTE-----FTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKI   89 (206)
T ss_pred             CCcEEEEcCCCc-------EEEEecCCC-----CCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEe
Confidence            589999999999       999994221     1124589999999999999999999  89999999999999999874


Q ss_pred             C-CEEEEEEEecc---ceeE-EEEEEEEEEEEe-eeCCC--eEEEEEE--------ecCCc--eeEEEEEEEEcC--CCe
Q 006041          317 N-NKVRILQEGCK---GLLY-MVLHARVVMDIC-EQHEQ--EISFEQV--------EGDFD--SFQGKWLFEQLG--SHH  376 (663)
Q Consensus       317 g-n~vrv~q~g~~---gll~-~~~~~rvVLDV~-E~ppr--rIsfr~V--------eGdFr--~f~G~WtLeplg--dGg  376 (663)
                      + +...++...-.   +++. .-|.   .+... ...+.  .+....+        +|.++  ...|-|.++|.+  +++
T Consensus        90 d~~~~i~~~~~p~~~~~~vs~RDfV---~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~  166 (206)
T cd08867          90 SEDLCVGRTITPSAAMGLISPRDFV---DLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK  166 (206)
T ss_pred             CCCeEEEEEEccccccCccCCcceE---EEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc
Confidence            4 33333332100   0000 0000   00000 00111  1222333        24444  457889999874  467


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          377 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       377 TrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      |.++|.+.++|+  |.+|.++++.++.+.+...+.+||+++
T Consensus       167 t~~~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~lr~~~  205 (206)
T cd08867         167 SFLVLYVQTDLR--GMIPQSLVESAMPSNLVNFYTDLVKGV  205 (206)
T ss_pred             eEEEEEEEeccC--CCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence            999999999995  789999999999999999999999875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=98.98  E-value=2.5e-08  Score=97.73  Aligned_cols=167  Identities=15%  Similarity=0.082  Sum_probs=114.9

Q ss_pred             CCceeecc-cccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHH-HHHHHhccCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFGQ-VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE-VWNVMTAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~~-~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeq-VWaVLTDyEnyPeWiP~V~sSrVLer~  316 (663)
                      .+|.+..+ .+|+       .+|-+..++    +.....+++...|++++++ +-+++.|.+..++|.+.|.++++++.-
T Consensus        19 ~~W~~~~~~~~~~-------~~~~~~~~~----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~   87 (206)
T smart00234       19 PGWVLSSENENGD-------EVRSILSPG----RSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVI   87 (206)
T ss_pred             CccEEccccCCcc-------eEEEEccCC----CCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEE
Confidence            48999997 7888       788874221    1235679999999999996 778999999999999999999999874


Q ss_pred             CCE--EEEEEEecc--ceeEEEEEEEEEEEEeeeCCC--eEEEEEE--------ecCCc--eeEEEEEEEEcCCCeEEEE
Q 006041          317 NNK--VRILQEGCK--GLLYMVLHARVVMDICEQHEQ--EISFEQV--------EGDFD--SFQGKWLFEQLGSHHTLLK  380 (663)
Q Consensus       317 gn~--vrv~q~g~~--gll~~~~~~rvVLDV~E~ppr--rIsfr~V--------eGdFr--~f~G~WtLeplgdGgTrVt  380 (663)
                      ++.  +..+.....  .+...-|.......  ...+.  .+....+        .|.++  .+.|.|.+++.+++.|+|+
T Consensus        88 ~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~--~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt  165 (206)
T smart00234       88 DNGTVIYHYVSKFVAGPVSPRDFVFVRYWR--ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVT  165 (206)
T ss_pred             CCCCeEEEEEEecccCcCCCCeEEEEEEEE--EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEE
Confidence            332  222211111  11000011100000  11111  2222222        23333  5688999999988889999


Q ss_pred             EEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          381 YSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       381 Ytve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      |..+++|+  |++|.++++.+....+..+++.+++.++..
T Consensus       166 ~~~~~D~~--G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~  203 (206)
T smart00234      166 WVSHADLK--GWLPHWLVRSLIKSGLAEFAKTWVATLQKH  203 (206)
T ss_pred             EEEEEecC--CCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            99999995  789999999999999999999998887654

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=98.92  E-value=2.4e-09  Score=98.29  Aligned_cols=77  Identities=13%  Similarity=0.242  Sum_probs=72.6

Q ss_pred             EEEEEEccCHHHHHHHhhCchhhhhcccccee------------------------------------------------
Q 006041           97 KAEMLVNADVDSVWNALTDYERLADFVPNLAC------------------------------------------------  128 (663)
Q Consensus        97 ~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------------------------  128 (663)
                      +.++.|++|+++||++|+||+++++|+|++.+                                                
T Consensus         2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~   81 (138)
T cd07813           2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGIRESFTSRVTLVPPESIEAELVDGPFK   81 (138)
T ss_pred             eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccccEEEEEEEEecCCCEEEEEecCCChh
Confidence            56899999999999999999999999999988                                                


Q ss_pred             -----------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 -----------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 -----------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                 .+++|+++|++++.|+.++|..++...+++.+..+|.+++++|++
T Consensus        82 ~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~  137 (138)
T cd07813          82 HLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ  137 (138)
T ss_pred             hceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                       237899999999999999999999999999999999999999975

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.81  E-value=1.7e-08  Score=91.21  Aligned_cols=77  Identities=18%  Similarity=0.341  Sum_probs=71.8

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      .|+.++.|+||++.||++|+||+++++++|.+.+                                              
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   82 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVSWTLVE   82 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEEEEEec
Confidence            5889999999999999999999999999999886                                              


Q ss_pred             ---------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHH
Q 006041          129 ---------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA  171 (663)
Q Consensus       129 ---------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~A  171 (663)
                                     .++||+++|++++.|+.++|..++..+.+..+...+++|++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  140 (140)
T cd07819          83 GEGNRSQEGSYTLTPKGDGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV  140 (140)
T ss_pred             ccceeEEEEEEEEEECCCCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence                           2368999999999999999999999999999999999999865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=98.79  E-value=7e-07  Score=87.23  Aligned_cols=168  Identities=11%  Similarity=0.136  Sum_probs=116.8

Q ss_pred             cCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-
Q 006041          237 LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-  315 (663)
Q Consensus       237 ~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-  315 (663)
                      ...+|....+..+.       .++.++.+.  .+......+++...|++++++++..+-|-..  +|.+.+.++++++. 
T Consensus        17 ~~~~W~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~   85 (206)
T PF01852_consen   17 DEDGWKLYKDKKNG-------DVYYKKVSP--SDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQI   85 (206)
T ss_dssp             TCTTCEEEEEETTT-------CEEEEEEEC--SSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEE
T ss_pred             CCCCCeEeEccCCC-------eEEEEEeCc--cccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeec
Confidence            35699999977777       777776442  1112456799999999999977777777666  99999999999987 


Q ss_pred             cCCEEEEEEE--ecc--ceeEEEEEEEEEEEEeee-CCC--eEEEEEEe---------cCCc--eeEEEEEEEEcCCCeE
Q 006041          316 ENNKVRILQE--GCK--GLLYMVLHARVVMDICEQ-HEQ--EISFEQVE---------GDFD--SFQGKWLFEQLGSHHT  377 (663)
Q Consensus       316 ~gn~vrv~q~--g~~--gll~~~~~~rvVLDV~E~-ppr--rIsfr~Ve---------GdFr--~f~G~WtLeplgdGgT  377 (663)
                      +++....+..  ...  .+...-|..   +..... .+.  .+.++.++         |.++  .+.+.|.|++.+++.|
T Consensus        86 ~~~~~i~~~~~~~~~~~p~~~RDfv~---~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~  162 (206)
T PF01852_consen   86 DEDTDIVYFVMKSPWPGPVSPRDFVF---LRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRT  162 (206)
T ss_dssp             ETTEEEEEEEEE-CTTTTSSEEEEEE---EEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEE
T ss_pred             CCCCeEEEEEecccCCCCCCCcEEEE---EEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCc
Confidence            4443222221  111  121111111   111111 222  34444443         2233  5679999999999889


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      +|+|..+++|+  |++|.++++.++...+...++.+++++++.
T Consensus       163 ~vt~~~~~D~~--G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~  203 (206)
T PF01852_consen  163 RVTYVSQVDPK--GWIPSWLVNMVVKSQPPNFLKNLRKALKKQ  203 (206)
T ss_dssp             EEEEEEEEESS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEEECCC--CCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            99999999994  789999999999999999999999998874

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=98.75  E-value=7e-07  Score=84.77  Aligned_cols=112  Identities=17%  Similarity=0.423  Sum_probs=81.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCc-c-cccCcCCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYET-L-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEn-y-PeWiP~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      .++.++.|+||+++||+++.|+.+ + +.|.|.++++++++.++  +.++.+.-+..+ -...+..+  ++..+...+++
T Consensus         2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~~~~~kE~--l~~~D~~~~~~   78 (148)
T cd07816           2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-KVKYVKER--IDAVDEENKTY   78 (148)
T ss_pred             cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-cceEEEEE--EEEEcccccEE
Confidence            377899999999999999999994 5 56889999999987642  234443322222 11112333  33334456999


Q ss_pred             EEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccC
Q 006041          352 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKN  390 (663)
Q Consensus       352 sfr~VeGdF-----r~f~G~WtLeplgdGgTrVtYtve~eP~~g  390 (663)
                      .|++++|++     +.+.+..+|.+.++++|.++|++.|++..+
T Consensus        79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~  122 (148)
T cd07816          79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGD  122 (148)
T ss_pred             EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Confidence            999999864     477899999999788999999999998643

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=98.74  E-value=2.2e-08  Score=90.50  Aligned_cols=67  Identities=31%  Similarity=0.556  Sum_probs=60.8

Q ss_pred             EccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------------
Q 006041          102 VNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------------  128 (663)
Q Consensus       102 i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------------  128 (663)
                      |+||++.||++||||++|++|+|.+.+                                                     
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~   80 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGIKRSWTSRVTEDPPERIRFEQISGPFKSFEGS   80 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTTCEEEEEEEEEECTTTEEEESSETTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCEEEEEEEEEEEEEeeeeeeeecCCCchhcEEE
Confidence            789999999999999999999999997                                                     


Q ss_pred             -----cCC-----ceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHH
Q 006041          129 -----RSS-----TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALA  168 (663)
Q Consensus       129 -----~~~-----gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~  168 (663)
                           .++     +|.++|++.++|++++|..++..++++.++.+|++||
T Consensus        81 W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   81 WRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             EEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence                 122     3589999999999999999999999999999999986

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=98.71  E-value=2.8e-07  Score=92.95  Aligned_cols=163  Identities=14%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             cccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEe
Q 006041          235 SDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS  314 (663)
Q Consensus       235 ~~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLe  314 (663)
                      .+...+|...+..+++       +++..+.+    .+...+.+++++.|+|++++|+++|.|.  ++.|.++|.++++++
T Consensus        23 ~~k~k~w~~~~~~~~~-------el~~~k~~----~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe   89 (204)
T cd08908          23 KEKFKGWVSYSTSEQA-------ELSYKKVS----EGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIE   89 (204)
T ss_pred             HHHhcCCcccCCCCcE-------EEEEeccC----CCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeE
Confidence            3455688888888888       88888644    2344678999999999999999999888  899999999999998


Q ss_pred             ecC-CEEEEEEE--------eccceeEEEEEE-----EEEEEEeeeCCCeEEEEEEecC-CceeEEEEEEEEcCCCeEEE
Q 006041          315 REN-NKVRILQE--------GCKGLLYMVLHA-----RVVMDICEQHEQEISFEQVEGD-FDSFQGKWLFEQLGSHHTLL  379 (663)
Q Consensus       315 r~g-n~vrv~q~--------g~~gll~~~~~~-----rvVLDV~E~pprrIsfr~VeGd-Fr~f~G~WtLeplgdGgTrV  379 (663)
                      +-+ +.-.+++.        .++.++.-.+..     .+++...-..+..+  . +.+- ...+.|.|.|+|.++|+|+|
T Consensus        90 ~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~--P-~~~VR~~~~~~~w~i~P~g~g~t~v  166 (204)
T cd08908          90 ILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRA--P-VAGVRVNVLLSRYLIEPCGSGKSKL  166 (204)
T ss_pred             ecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccC--C-cCceEEEEEeeEEEEEECCCCcEEE
Confidence            744 33233332        222221101110     11111110000000  0 0010 12679999999999899999


Q ss_pred             EEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          380 KYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       380 tYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      +|..+++|+  |.+|.|++|. +..-+...|..||+-
T Consensus       167 tyi~~~DPg--G~iP~W~~N~-~g~~~~~~~~~~r~s  200 (204)
T cd08908         167 TYMCRIDLR--GHMPEWYTKS-FGHLCAAEVVKIRDS  200 (204)
T ss_pred             EEEEEeCCC--CCCcHHHHhh-HHHHHHHHHHHHHhh
Confidence            999999995  7799988664 455566666666653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=98.65  E-value=1.9e-07  Score=93.62  Aligned_cols=145  Identities=19%  Similarity=0.197  Sum_probs=112.7

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCE-EE-EEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK-VR-ILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~-vr-v~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      .+..+....|.++++++|++++|++.|-+|+|+|+.|.|.++.+++ .. -..+|+.++. -.|...++.    .++.-+
T Consensus        67 ~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~-E~y~S~Vt~----~~p~l~  141 (227)
T KOG3177|consen   67 EKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLD-ERYTSNVTC----VKPHLT  141 (227)
T ss_pred             HHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccc-hhheeeeEE----ecccce
Confidence            3456777789999999999999999999999999999999987432 22 2345777653 456666543    255444


Q ss_pred             EEEEEe-cCCceeEEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041          352 SFEQVE-GDFDSFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS  425 (663)
Q Consensus       352 sfr~Ve-GdFr~f~G~WtLeplg--dGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~  425 (663)
                      .-...+ +-|..+...|+|.|-.  .+.|.|.|.+.|+..  ..+-..+..-++.+-...++.|+.+||...++--.
T Consensus       142 kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~--S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~  216 (227)
T KOG3177|consen  142 KTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFK--SLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPES  216 (227)
T ss_pred             EEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence            334444 4577999999999876  578999999999974  66777788888888899999999999999987633

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=98.64  E-value=9.3e-08  Score=87.55  Aligned_cols=78  Identities=22%  Similarity=0.360  Sum_probs=67.8

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccc--cee---------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPN--LAC---------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~--l~~---------------------------------------------  128 (663)
                      ++.++.|++|++.||++|+||+++++|+|+  +..                                             
T Consensus         1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLADAERWPEFLPTVHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQEEPP   80 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEEeeCC
Confidence            467899999999999999999999999995  221                                             


Q ss_pred             --------------cC-CceEEEEEEEEecCC--CCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 --------------RS-STTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 --------------~~-~gT~LtY~v~V~P~f--~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                    .+ ++|+++|++++.|+.  +++..++..+++++++.+|.+|+++||+
T Consensus        81 ~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  142 (142)
T cd08861          81 PPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER  142 (142)
T ss_pred             CChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence                          12 679999999999986  4566799999999999999999999984

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.62  E-value=1.5e-06  Score=83.47  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=88.0

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .++.+..|++|+++||+.|+|.|.+..-+|+|++++...   +......+---+.+-.++..++.+.....+++.+....
T Consensus         2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g---~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g   78 (146)
T COG3427           2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNG---DEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITING   78 (146)
T ss_pred             cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeecC---CeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEe
Confidence            467889999999999999999999999999999998643   33322222111223345555555443334667877665


Q ss_pred             Eec---CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 006041          356 VEG---DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD  415 (663)
Q Consensus       356 VeG---dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~  415 (663)
                      ..|   -|..+.....+.+.+++ |+|.|.++.+..  + +...+..+.++.....++..+-+
T Consensus        79 ~G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~g--g-~laqlGsr~i~~~~~kli~~~~~  137 (146)
T COG3427          79 SGGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVG--G-KLAQLGSRLIDSVARKLINRFFD  137 (146)
T ss_pred             ecccccceeeeeeEEEEEEcCCC-cEEEEEEEcccc--H-HHHHHhHHHHHHHHHHHHHHHHH
Confidence            431   24466778889998886 999999998862  3 33455555555555444444433

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.61  E-value=3.7e-06  Score=78.94  Aligned_cols=133  Identities=14%  Similarity=0.170  Sum_probs=81.3

Q ss_pred             EEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEE-EEeccceeEEEEEEEEEEEEeeeCCCe--EEEEE
Q 006041          279 ASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQE--ISFEQ  355 (663)
Q Consensus       279 asIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~-q~g~~gll~~~~~~rvVLDV~E~pprr--Isfr~  355 (663)
                      .++.|++|+++||++|+|++++..-+|+|.+.+.+.   +..... ...... +-..|..++.+.-.. ++..  +.+..
T Consensus         1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~-i~~~~~g~~~~~~~~-~~~~~~~~~~g   75 (140)
T PF06240_consen    1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGP-IKGTFDGEVRITEID-PPESYTLEFEG   75 (140)
T ss_dssp             EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCC-CEEEEEEEEEEEEEE-TTTEEEEEEEE
T ss_pred             CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEecc-EEEEEEEEEEEEEcC-CCcceEeeeec
Confidence            468899999999999999999999999999999875   333222 223333 234555554433222 3443  55554


Q ss_pred             EecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          356 VEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       356 VeGdF-r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ..... ....+.-++...+++.|+|+|+.+++..  +++ ..+.++.+......+++.|-+.+++
T Consensus        76 ~g~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~--G~l-a~~g~~~i~~~~~~l~~~f~~~l~~  137 (140)
T PF06240_consen   76 RGRGGGSSASANITLSLEDDGGTRVTWSADVEVG--GPL-ASLGQRLIESVARRLIEQFFENLER  137 (140)
T ss_dssp             EECTCCEEEEEEEEEEECCCTCEEEEEEEEEEEE--CHH-HHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccceEEEEEEEEEcCCCCCcEEEEEEEEEEc--cCH-HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            43211 1334444555555555999999999974  433 4455666666666666666555543

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.59  E-value=1.1e-06  Score=79.29  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=85.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  356 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V  356 (663)
                      ++.++.|+|||++||++++|.++|++|++... ...--..|+...+...+. ..  ...... ++++  .++++|.|...
T Consensus         2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~~~~~-~~--~~~~~~-v~~~--~~~~~l~~~~~   74 (136)
T cd08893           2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYRRGDD-GT--VDVEGE-VLES--DPPRRLVHTWR   74 (136)
T ss_pred             eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEEeCCC-cc--cccceE-EEEe--cCCCeEEEEEe
Confidence            56789999999999999999999999998732 111123444443332221 11  111222 1222  47788888866


Q ss_pred             ecC------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          357 EGD------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       357 eGd------Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .+.      ......+|+|++.++ +|+|+++.+..+.      ...+...+.++...+|+.|++++|.
T Consensus        75 ~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~------~~~~~~~~~~gw~~~l~~Lk~~~e~  136 (136)
T cd08893          75 AVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPP------GSPTLEGVSGGWPAILSSLKTLLET  136 (136)
T ss_pred             cCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCC------chhHHHhhhcCHHHHHHHHHHHhcC
Confidence            422      125677889999765 6999888765331      2245667788999999999999873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins

Probab=98.52  E-value=8e-06  Score=82.44  Aligned_cols=162  Identities=15%  Similarity=0.141  Sum_probs=111.6

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-cC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-EN  317 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~g  317 (663)
                      ++|++.++.+++       .||.+-..   +..+  .-.+++.+|++++++||+++.|.+.-.+|.+.|.+.+++++ ++
T Consensus        22 ~gWk~~k~~~~~-------~v~~k~~~---~~~g--kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~   89 (204)
T cd08904          22 SGWKVVKTSKKI-------TVSWKPSR---KYHG--NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDS   89 (204)
T ss_pred             cCCeEEecCCce-------EEEEEEcC---CCCc--eEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCC
Confidence            699999999999       99998533   2233  55889999999999999999999999999999999999987 44


Q ss_pred             CEEEEEEEecc---ceeE-EEEEEEEEEEEee-eCCCe-E-EEEEEe--------cCCc--eeEEEEEEEEcCCC--eEE
Q 006041          318 NKVRILQEGCK---GLLY-MVLHARVVMDICE-QHEQE-I-SFEQVE--------GDFD--SFQGKWLFEQLGSH--HTL  378 (663)
Q Consensus       318 n~vrv~q~g~~---gll~-~~~~~rvVLDV~E-~pprr-I-sfr~Ve--------GdFr--~f~G~WtLeplgdG--gTr  378 (663)
                      +....+.+...   +++. .-|..   ++... ..+.. | ....++        |.++  ..-+-|.+.|++++  .|.
T Consensus        90 ~T~I~~~~~~~~~~~~vspRDfV~---vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~  166 (204)
T cd08904          90 DTFICHTITQSFAMGSISPRDFVD---LVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSK  166 (204)
T ss_pred             CcEEEEEecccccCCcccCceEEE---EEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceE
Confidence            44444432111   1110 00111   11100 01111 1 112222        3333  22467899998653  799


Q ss_pred             EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          379 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       379 VtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      ++|-+..+|+  |++|.++++.++...+......|++.+
T Consensus       167 l~~~~~~Dlk--G~lP~~vv~~~~~~~~~~f~~~~~~~~  203 (204)
T cd08904         167 LVMFVQPELR--GNLSRSVIEKTMPTNLVNLILDAKDGI  203 (204)
T ss_pred             EEEEEEeCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence            9999999986  889999999999999988888887753

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.50  E-value=4.2e-07  Score=82.25  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=69.8

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      |+.++.|+||++.||++++|++++++++|.+.+                                               
T Consensus         2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~~~~~~~~~   81 (139)
T cd07817           2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVEGADPN   81 (139)
T ss_pred             eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEecCCCCcEEEEEEEeccCCCCEEEEEECCCCCCc
Confidence            688999999999999999999999999999985                                               


Q ss_pred             --------cC-CceEEEEEEEEecCCCCCH----HHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 --------RS-STTTLSYEVNVIPRLNFPA----IFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 --------~~-~gT~LtY~v~V~P~f~vP~----~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                              .+ ++|.++|++...|..+++.    .+++..+++.+...|+.+++.||
T Consensus        82 ~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE  138 (139)
T cd07817          82 AGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE  138 (139)
T ss_pred             ceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence                    12 4899999999999988876    46889999999999999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.50  E-value=1e-06  Score=85.96  Aligned_cols=94  Identities=17%  Similarity=0.232  Sum_probs=85.8

Q ss_pred             cCCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041           78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------  128 (663)
                      +.++|.|-....+.+. ..+.+++.|++++++||+++.|++++.+|.|++..                            
T Consensus        24 ~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rd  103 (195)
T cd08876          24 DKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRD  103 (195)
T ss_pred             cCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCce
Confidence            4567888888877665 77999999999999999999999999999999988                            


Q ss_pred             ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041          129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDL  160 (663)
Q Consensus       129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL  160 (663)
                                                                      .+++|.++|.+++.|+.++|..++..++++.+
T Consensus       104 fv~~~~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~  183 (195)
T cd08876         104 MVLRSTTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFAKDAP  183 (195)
T ss_pred             EEEEEEEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence                                                            23679999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 006041          161 PVNLQALACRA  171 (663)
Q Consensus       161 p~nL~Ai~~~A  171 (663)
                      +..|.+++++|
T Consensus       184 ~~~l~~l~~~~  194 (195)
T cd08876         184 YNTLENLRKQL  194 (195)
T ss_pred             HHHHHHHHHhh
Confidence            99999999998

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.49  E-value=1.4e-06  Score=82.92  Aligned_cols=129  Identities=14%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCCeEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEIS  352 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pprrIs  352 (663)
                      ++.+..+++|+||+++||++|+|.+++++|++..   ......|+..++...+. +.  ..+...    +.+ .++++|.
T Consensus        10 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~~~~~~-~~--~~~~~~----v~e~~p~~~l~   79 (157)
T cd08899          10 GATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEFVMDDE-EG--PNATGT----ILACEPPRLLA   79 (157)
T ss_pred             CeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEEEecCC-CC--CccceE----EEEEcCCcEEE
Confidence            5679999999999999999999999999999943   11122344433322221 00  112222    222 3678899


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      |....++ ......|+|++.+ ++|+|+|..+..+.  .     -....+..+-...|..|++++|+..
T Consensus        80 ~~~~~~~-~~~~~~~~l~~~~-~gT~v~~~~~~~~~--~-----~~~~~~~~GW~~~L~~Lk~~~e~~~  139 (157)
T cd08899          80 FTWGEGG-GESEVRFELAPEG-DGTRLTLTHRLLDE--R-----FGAGAVGAGWHLCLDVLEAALEGGP  139 (157)
T ss_pred             EEecCCC-CCceEEEEEEEcC-CCEEEEEEEeccCc--h-----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence            8877554 3446788899876 56999999887652  1     2345667788899999999998653

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.44  E-value=7.2e-07  Score=79.85  Aligned_cols=77  Identities=17%  Similarity=0.296  Sum_probs=67.4

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      |+.++.|+||++.||++|||+++|+++.|.+..                                               
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~~   80 (140)
T cd08865           1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGSS   80 (140)
T ss_pred             CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEecC
Confidence            567899999999999999999999999999854                                               


Q ss_pred             -------------cCCceEEEEEEEEecCCCCC--HHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 -------------RSSTTTLSYEVNVIPRLNFP--AIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 -------------~~~gT~LtY~v~V~P~f~vP--~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                   .+++|+|+|+.++.+++.++  ..++...++..+...|.++++.||
T Consensus        81 ~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e  139 (140)
T cd08865          81 GPFPYEDTYTFEPVGGGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLE  139 (140)
T ss_pred             CCcceEEEEEEEEcCCceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence                         35789999999999976544  348899999999999999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=98.41  E-value=1.1e-06  Score=79.88  Aligned_cols=77  Identities=23%  Similarity=0.350  Sum_probs=68.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      .+++++.|++|+++||++|||++++++++|++..                                              
T Consensus         2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (144)
T cd05018           2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITGEGK   81 (144)
T ss_pred             eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEEEEc
Confidence            3678999999999999999999999999998876                                              


Q ss_pred             ----------------cCCceEEEEEEEEecCCCC---CHHHHHHHHhhchHHHHHHHHHHH
Q 006041          129 ----------------RSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACRA  171 (663)
Q Consensus       129 ----------------~~~gT~LtY~v~V~P~f~v---P~~lie~~lr~dLp~nL~Ai~~~A  171 (663)
                                      .++||+|+|++++.+...+   |..++....++.+...+++|++++
T Consensus        82 ~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~  143 (144)
T cd05018          82 GGAGFVKGTARVTLEPDGGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI  143 (144)
T ss_pred             CCCceEEEEEEEEEEecCCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence                            2367999999999977665   888999999999999999999876

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=98.38  E-value=1.2e-05  Score=81.42  Aligned_cols=158  Identities=15%  Similarity=0.110  Sum_probs=106.0

Q ss_pred             ccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041          236 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR  315 (663)
Q Consensus       236 ~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer  315 (663)
                      +...+|......++.       +++..+.+.    +-+.+.+++++.|+++|++|.+.+.+  ..++|-.++.+++++++
T Consensus        24 ~kfk~w~~~~~~~~~-------e~~ykK~~d----~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~   90 (205)
T cd08909          24 EKFKGWISCSSSDNT-------ELAYKKVGD----GNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVET   90 (205)
T ss_pred             HHhcCCcccCCcCCe-------EEEEecCCC----CCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEE
Confidence            345688888888888       777775331    23367899999999999999998877  59999999999999987


Q ss_pred             cCC-EEEEEEE--------eccceeEEEEEEEEEEEEeeeCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCC
Q 006041          316 ENN-KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSH  375 (663)
Q Consensus       316 ~gn-~vrv~q~--------g~~gll~~~~~~rvVLDV~E~ppr--rIsfr~Ve-------GdFr--~f~G~WtLeplgdG  375 (663)
                      -+. .-.++..        .++-++.-.|..    +   .+..  .|....++       |.++  ...|.|.++|.++|
T Consensus        91 ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~----~---~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g  163 (205)
T cd08909          91 LDKQTEVYQYVLNCMAPHPSRDFVVLRSWRT----D---LPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSG  163 (205)
T ss_pred             eCCCcEEEEEEeecCCCCCCCEEEEEEEEEE----e---CCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCC
Confidence            433 3233322        122111111110    1   0111  22222222       2233  45789999999988


Q ss_pred             eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          376 HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       376 gTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      +|+|+|-..++|+  |.+|.|+ ++.+..-+...|..||+-
T Consensus       164 ~trvt~i~~vDpk--G~~P~W~-~n~~g~~~~~~~~~~r~s  201 (205)
T cd08909         164 KSRLTHICRVDLK--GHSPEWY-NKGFGHLCAAEAARIRNS  201 (205)
T ss_pred             CEEEEEEEEecCC--CCChHHH-HHhHHHHHHHHHHHHHhh
Confidence            9999999999995  7899977 456677777777777763

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=98.30  E-value=2.7e-06  Score=76.83  Aligned_cols=78  Identities=23%  Similarity=0.433  Sum_probs=67.3

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +++.++.|+||++.||+++||+++++++.|++..                                              
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~   81 (138)
T cd08862           2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGLVRSTFTVTELRPGHSFTWTGPAPGI   81 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCCCceEEEEEEecCCCEEEEEecCCCE
Confidence            5788999999999999999999999999998765                                              


Q ss_pred             ----------cC-CceEEEEEEEEecCC-CCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 ----------RS-STTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 ----------~~-~gT~LtY~v~V~P~f-~vP~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                .+ ++|+|+|+.+..+.+ ++...++...++.+++.+|.+|++.+|
T Consensus        82 ~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E  137 (138)
T cd08862          82 SAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE  137 (138)
T ss_pred             EEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence                      23 789999999888653 234568999999999999999999886

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.30  E-value=3.9e-05  Score=71.20  Aligned_cols=134  Identities=18%  Similarity=0.194  Sum_probs=84.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +..+..|+||+++||++++|-+.+.+|++.    +..+.+-.+.|+..++...+..+.. +.... .++++  .++++|.
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g-~v~e~--~p~~~l~   77 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRI-VFLEI--EPPERIV   77 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceE-EEEEE--cCCCEEE
Confidence            567788999999999999999999999852    2223333345555444333322321 21222 22333  4789999


Q ss_pred             EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      |....+. ....-.|+|++.+ ++|+|+++..+...  . .-...+...+..+...+|..|++.+++
T Consensus        78 ~t~~~~~-~~~~v~~~~~~~~-~gT~ltl~~~~~~~--~-~~~~~~~~~~~~Gw~~~l~~L~~~l~~  139 (139)
T cd08894          78 YDHGSGP-PRFRLTVTFEEQG-GKTRLTWRQVFPTA--A-ERCEKIKFGAVEGNEQTLDRLAAYLAR  139 (139)
T ss_pred             EEeccCC-CcEEEEEEEEECC-CCEEEEEEEEcCCH--H-HHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence            9875442 2346788999987 57999998764321  0 001223455677888899999988763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=98.29  E-value=3.9e-06  Score=75.31  Aligned_cols=78  Identities=19%  Similarity=0.375  Sum_probs=71.0

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +|..++.|++|++.||++|+|+++++++.|.+..                                              
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~~~~~~~~~i~~~~~~~~   81 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDGGTVRERLLALDDAERRYSYRIVEGP   81 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCCCEEEEEehhcCccCCEEEEEecCCC
Confidence            6889999999999999999999999999998555                                              


Q ss_pred             ---------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 ---------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 ---------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                     .+++|.++|+....|..++|..++...++..+...|+.|++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~  140 (140)
T cd07821          82 LPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE  140 (140)
T ss_pred             CCcccceEEEEEEECCCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence                           12489999999999998899999999999999999999999874

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.28  E-value=2.2e-05  Score=71.88  Aligned_cols=131  Identities=19%  Similarity=0.194  Sum_probs=80.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .|+.++.|+||+++||++++|.+.|++|++... .......+..-.+...+...   ..+... ++++  .++++|.|..
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~---~~~~~~-i~~~--~p~~~l~~~~   74 (145)
T cd08898           2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH---GVFPVT-VVEV--DPPRRFSFRW   74 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc---cceEEE-EEEe--CCCcEEEEEe
Confidence            378899999999999999999999999999753 11110111111222222110   111121 1122  4678999886


Q ss_pred             EecC---------CceeEEEEEEEEcCCCeEEEEEEEE-EEeccCccch-HH--HHHHHHHhhHHHHHHHHHHHHHh
Q 006041          356 VEGD---------FDSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLS-EA--IMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       356 VeGd---------Fr~f~G~WtLeplgdGgTrVtYtve-~eP~~gg~LP-~~--L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ..+.         -......|+|++.++ +|+|+++.. +..     .+ ..  ........+-..+|..|++++|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~-----~~~~~~~~~~~~~~~gw~~~l~~L~~~le~  145 (145)
T cd08898          75 HPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDA-----LPAERRAEAYRMNEGGWDEQLENLVAYVEA  145 (145)
T ss_pred             cCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCC-----CChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence            5332         113467889999875 599999875 221     11 11  12345777888999999998863

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.24  E-value=2.2e-05  Score=72.41  Aligned_cols=127  Identities=18%  Similarity=0.207  Sum_probs=82.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V-----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      +..++.|+||+++||++++|-+.+.+|+...     ..++.--+.|+..++.....++-....+... ++++  .++++|
T Consensus         2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~-~~ei--~p~~~l   78 (133)
T cd08897           2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGT-YTEV--EPHKLI   78 (133)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceE-EEEE--CCCCEE
Confidence            6678999999999999999999999997542     2333333466665544332222111122322 2333  478999


Q ss_pred             EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          352 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       352 sfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .|+...+    ...+|+|++.+ ++|+|+.+.  .+     .+.. .......+-..+|..|++.+|+
T Consensus        79 ~~~~~~~----~~v~~~l~~~~-~gT~l~l~~--~~-----~~~~-~~~~~~~GW~~~l~~L~~~le~  133 (133)
T cd08897          79 EYTMEDG----REVEVEFTEEG-DGTKVVETF--DA-----ENEN-PVEMQRQGWQAILDNFKKYVES  133 (133)
T ss_pred             EEEcCCC----CEEEEEEEECC-CCEEEEEEE--CC-----CCCC-cHHHHHHHHHHHHHHHHHHhhC
Confidence            9986432    36789999976 569998863  32     1111 2335667888999999988863

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PRK10724 hypothetical protein; Provisional

Probab=98.15  E-value=7.1e-06  Score=79.51  Aligned_cols=83  Identities=13%  Similarity=0.267  Sum_probs=74.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +|+.++.|++|++++|++++||+++.+|+|..+.                                              
T Consensus        16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~~~~f~srv~~~~~~~I~~~~~~Gp   95 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMQLVDGP   95 (158)
T ss_pred             eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCccEEEEEEEEecCCCEEEEEecCCC
Confidence            6999999999999999999999999999999986                                              


Q ss_pred             -------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhccc
Q 006041          129 -------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGW  177 (663)
Q Consensus       129 -------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~~  177 (663)
                                   .+++|.++|+++++.+-.++..++.....+-...++.|+++||+++++.
T Consensus        96 F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~  157 (158)
T PRK10724         96 FKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSA  157 (158)
T ss_pred             hhhccceEEEEECCCCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                         1257999999999999889888888888887778888999999998764

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.12  E-value=0.00019  Score=67.20  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +..++.|+||+++||++++|-+.+.+|++.    +..+.+--+.|+..++...+.++.. +..... ++++  .++++|.
T Consensus         2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~~i--~p~~~l~   77 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEE-FPNPGC-FLEV--VPGERLV   77 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCE-ecceEE-EEEE--eCCCEEE
Confidence            456788999999999999999999999873    3334544556666555443333321 222222 2333  4789999


Q ss_pred             EEEEecC---C-c--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          353 FEQVEGD---F-D--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       353 fr~VeGd---F-r--~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      |...-.+   . .  ....+|+|++.+ ++|+|+.+.....   .-.........+..+-...|..|++.++
T Consensus        78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~---~~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          78 FTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWT---EADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCC---HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            8753211   1 1  145689999976 4699998644321   0011112222346788899999998876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.11  E-value=9.8e-06  Score=75.05  Aligned_cols=79  Identities=15%  Similarity=0.283  Sum_probs=67.3

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhccccce------e----------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLA------C----------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~------~----------------------------------------  128 (663)
                      +|+.++.|++|++.||++++|++++.+|.|...      .                                        
T Consensus         3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~p~~~i~~~   82 (150)
T cd07818           3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEMEITESVPNERIEYE   82 (150)
T ss_pred             EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEEEEEecCCCcEEEEE
Confidence            588999999999999999999999999998321      0                                        


Q ss_pred             -------------------cCCceEEEEEEEEecCCCCC----HHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 -------------------RSSTTTLSYEVNVIPRLNFP----AIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 -------------------~~~gT~LtY~v~V~P~f~vP----~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                         .++||.|+|+++..+.+..+    ..++...+++++...|.++++.+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  150 (150)
T cd07818          83 LRFIKPFEATNDVEFTLEPVGGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK  150 (150)
T ss_pred             EEecCCccccceEEEEEEEcCCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence                               24779999999999887655    3477999999999999999999884

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.11  E-value=6.5e-05  Score=69.72  Aligned_cols=130  Identities=17%  Similarity=0.214  Sum_probs=83.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  356 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V  356 (663)
                      ++.++.|+||+++||+.++|-+.+.+|.+.-...++  +.|+..+.......+.    ... .++++  .++++|.|...
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~--~~Gg~~~~~~~~~~~~----~~g-~~~~~--~p~~~l~~~w~   72 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL--EEGKTVTWDWEMYGAS----VPV-NVLEI--EPNKRIVIEWG   72 (136)
T ss_pred             eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccc--cCCCEEEEEEEccCCc----eEE-EEEEE--cCCCEEEEEec
Confidence            678999999999999999999999998665333332  3455444433322221    112 22233  47899998865


Q ss_pred             ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHH-HHHHHhhHHHHHHHHHHHHHh
Q 006041          357 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM-EEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       357 eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~-er~vre~L~~~L~ALR~RAEk  419 (663)
                      .+. ....-.|+|++.++++|+|++....-+.   .-+..+. ......+...+|..|+..+|.
T Consensus        73 ~~~-~~s~v~~~l~~~~~ggT~ltl~~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          73 DPG-EPTTVEWTFEELDDGRTFVTITESGFPG---TDDEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             CCC-CCEEEEEEEEECCCCcEEEEEEECCCCC---CcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            432 1346789999987568999998653221   1221221 122457888999999999886

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.05  E-value=9.5e-06  Score=75.81  Aligned_cols=77  Identities=21%  Similarity=0.273  Sum_probs=65.3

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      |..++.|++|++.||+.|+|+++|+..+|++..                                               
T Consensus         1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   80 (146)
T cd07823           1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATGK   80 (146)
T ss_pred             CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEEe
Confidence            456899999999999999999999999998876                                               


Q ss_pred             ------------------cCCceEEEEEEEEecCCCCCHHH---HHHHHhhchHHHHHHHHHHHH
Q 006041          129 ------------------RSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 ------------------~~~gT~LtY~v~V~P~f~vP~~l---ie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                        .+++|+|+|++++.....++.+.   +....++-+..-++.|++++|
T Consensus        81 ~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e  145 (146)
T cd07823          81 DARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA  145 (146)
T ss_pred             cCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence                              14679999999998888777664   788888888888888888876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins

Probab=98.05  E-value=0.00018  Score=72.81  Aligned_cols=162  Identities=13%  Similarity=0.194  Sum_probs=106.3

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-cC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-EN  317 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~g  317 (663)
                      +.|++.+...|.       .|+.+..-   |.+|..  .+.+.+|+..+++||+.|.+.....+|.+++++++|+++ +.
T Consensus        23 ~~Wkl~k~~~~~-------~v~~k~~~---ef~gkl--~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~   90 (202)
T cd08902          23 EEWRVAKKSKDV-------TVWRKPSE---EFGGYL--YKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEE   90 (202)
T ss_pred             cCcEEEEeCCCE-------EEEEecCC---cCCCce--EEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcC
Confidence            399999999988       88888422   233333  556666789999999999999999999999999999987 33


Q ss_pred             CEEEE-EEEecc--ceeE-EEEEEEEEEEEee-eCCCeEEEE-EEe------cCCcee--EEEEEEEEcCCC--eEEEEE
Q 006041          318 NKVRI-LQEGCK--GLLY-MVLHARVVMDICE-QHEQEISFE-QVE------GDFDSF--QGKWLFEQLGSH--HTLLKY  381 (663)
Q Consensus       318 n~vrv-~q~g~~--gll~-~~~~~rvVLDV~E-~pprrIsfr-~Ve------GdFr~f--~G~WtLeplgdG--gTrVtY  381 (663)
                      +.... +.+.-.  +++. .-|..   +.... ..+..+.-- .++      |.++++  =+-|.+.|++++  .|.+++
T Consensus        91 dt~I~~yvt~~~~~~iISpRDFVd---v~~~~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~  167 (202)
T cd08902          91 NCCVMRYTTAGQLLNIISPREFVD---FSYTTQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTG  167 (202)
T ss_pred             CcEEEEEEcccCCcCccCccceEE---EEEEEEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEE
Confidence            44332 332111  1110 00111   01111 111111110 011      223322  357899998765  566777


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      -+.++++  |++|..+++.++-+.+......||+++
T Consensus       168 ~lq~DLk--G~LPqsiIdq~~~~~~~~F~~~Lrk~~  201 (202)
T cd08902         168 YIQTDLR--GMLPQSAVDTAMASTLVNFYSDLKKAL  201 (202)
T ss_pred             EEEecCC--CCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence            7778885  789999999999999999999999875

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=98.04  E-value=2.3e-05  Score=74.63  Aligned_cols=79  Identities=13%  Similarity=0.247  Sum_probs=70.9

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +..-+|.|++|++.||++++|.+++.+|+|..+.                                              
T Consensus         2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~~~~   81 (146)
T cd08860           2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRARRV   81 (146)
T ss_pred             cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEEEEe
Confidence            3567899999999999999999999999999988                                              


Q ss_pred             ----------------cCCceEEEEEEEEecC--CCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 ----------------RSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 ----------------~~~gT~LtY~v~V~P~--f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                      .++||+++|..+....  .+++..++.+.+++.++.+|.+||++||+
T Consensus        82 ~~~p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~  144 (146)
T cd08860          82 ETGPFAYMNIRWEYTEVPEGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA  144 (146)
T ss_pred             cCCCcceeeeeEEEEECCCCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence                            2467999999988854  47778899999999999999999999997

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=98.02  E-value=4.5e-05  Score=68.53  Aligned_cols=78  Identities=21%  Similarity=0.334  Sum_probs=67.4

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +|+.++.|+||++.||++|+|++++.++.|.+..                                              
T Consensus         3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~   82 (139)
T PF10604_consen    3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVAGRGTVREEITEYDPEPRRITWRFVPSGF   82 (139)
T ss_dssp             EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEECSCSEEEEEEEEEETTTTEEEEEEESSSS
T ss_pred             EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEeccccceeEEEEEecCCCcEEEEEEEecce
Confidence            5789999999999999999999999999999887                                              


Q ss_pred             -----------cCCceEEEEEEEEecC--CCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 -----------RSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 -----------~~~gT~LtY~v~V~P~--f~vP~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                 .++||+++|++++.|.  -+++..++...++..+...|+.|++.+|
T Consensus        83 ~~~~~~~~~~~~~~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E  139 (139)
T PF10604_consen   83 TNGTGRWRFEPVGDGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE  139 (139)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEEcCCCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence                       2467999999999972  3444567899999999999999999987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.00  E-value=0.00037  Score=65.26  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCc-EE---EEEeecCCEEEEEEEecc-------ceeEEEEEEEEEEEEee
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA-IS---KILSRENNKVRILQEGCK-------GLLYMVLHARVVMDICE  345 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~-sS---rVLer~gn~vrv~q~g~~-------gll~~~~~~rvVLDV~E  345 (663)
                      ++.+..|+||++.||++++|.+.+.+|++.-. .+   ..-.+.|+...+......       +.. ..+.. .++++  
T Consensus         2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~-~~~~g-~v~~v--   77 (146)
T cd08895           2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNT-DVFGG-RFLEL--   77 (146)
T ss_pred             EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcE-eeeEE-EEEEE--
Confidence            56678899999999999999999999997432 22   222234554444333211       111 11122 12232  


Q ss_pred             eCCCeEEEEEEe--cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          346 QHEQEISFEQVE--GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       346 ~pprrIsfr~Ve--GdFr-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      .++++|.|...-  +... ...-.|+|++.+ ++|+|+++...-+       ..........+-..+|..|++.+|
T Consensus        78 ~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~~-------~~~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          78 VPNERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGIP-------DGIPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             cCCCEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCCC-------chhhhhHHHHHHHHHHHHHHHHhc
Confidence            477899987542  2222 346788999986 5699998876322       223345777788889999998876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=97.99  E-value=1.6e-05  Score=74.32  Aligned_cols=74  Identities=22%  Similarity=0.289  Sum_probs=63.3

Q ss_pred             EEEEEEccCHHHHHHHhhCchhhhhcccccee------------------------------------------------
Q 006041           97 KAEMLVNADVDSVWNALTDYERLADFVPNLAC------------------------------------------------  128 (663)
Q Consensus        97 ~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------------------------  128 (663)
                      .-+..|++|++.||+++||++++++++|++.+                                                
T Consensus         4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~   83 (146)
T cd07824           4 HTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLEVRAS   83 (146)
T ss_pred             eEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEEEEEE
Confidence            34678999999999999999999999997654                                                


Q ss_pred             -------------cCCceEEEEEEEEecCC-------CCCHHHHHHHHhhchHHHHHHHHHH
Q 006041          129 -------------RSSTTTLSYEVNVIPRL-------NFPAIFLERIIRSDLPVNLQALACR  170 (663)
Q Consensus       129 -------------~~~gT~LtY~v~V~P~f-------~vP~~lie~~lr~dLp~nL~Ai~~~  170 (663)
                                   .++||.|+|+.++.++-       .+...++....++-++..+++|+++
T Consensus        84 g~~~~~~~~~~~~~~~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~  145 (146)
T cd07824          84 GDLEGVGRWTLAPDGSGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR  145 (146)
T ss_pred             EeeeEEEEEEEEEcCCCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence                         24789999999999854       5666699999999999999999875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=97.98  E-value=0.00031  Score=62.61  Aligned_cols=121  Identities=19%  Similarity=0.211  Sum_probs=77.4

Q ss_pred             cCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEecC---C
Q 006041          284 KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGD---F  360 (663)
Q Consensus       284 ~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGd---F  360 (663)
                      +||+++||++++|.+.+.+|.+ +.....--+.|+..++ .. .++-. +.+... ++++  .++++|.|....++   .
T Consensus         1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~~~Gg~~~~-~~-~~g~~-~~~~~~-v~~~--~p~~~i~~~~~~~~~~~~   73 (124)
T PF08327_consen    1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDFRPGGSFRF-MD-PDGGE-FGFDGT-VLEV--EPPERIVFTWRMPDDPDG   73 (124)
T ss_dssp             SSSHHHHHHHHHSHHHHHHHSE-EEEEEEECSTTEEEEE-EE-TTSEE-EEEEEE-EEEE--ETTTEEEEEEEEETSSSC
T ss_pred             CcCHHHHHHHHCCHhHHhhccC-CCcceeeeecCCEEEE-Ee-cCCCC-ceeeEE-EEEE--eCCEEEEEEEEccCCCCC
Confidence            5999999999999999999911 1222333345555444 22 33321 223333 2233  47899999865433   3


Q ss_pred             ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          361 DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       361 r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      ......|+|++ .+++|+|++....-+     . .......+..+...+|..|++.+|
T Consensus        74 ~~~~v~~~~~~-~~~~T~l~~~~~~~~-----~-~~~~~~~~~~gw~~~l~~L~~~lE  124 (124)
T PF08327_consen   74 PESRVTFEFEE-EGGGTRLTLTHSGFP-----D-DDEEEEGMEQGWEQMLDRLKAYLE  124 (124)
T ss_dssp             EEEEEEEEEEE-ETTEEEEEEEEEEEH-----S-HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEE-cCCcEEEEEEEEcCC-----c-cHHHHHHHHHHHHHHHHHHHHHhC
Confidence            36688889999 556899999885432     1 222222288899999999999876

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.90  E-value=0.00072  Score=62.97  Aligned_cols=133  Identities=13%  Similarity=0.053  Sum_probs=81.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcC-----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~-----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      +.-+..++||+++||++++|-+.+.+|+..     +..+++--+.|+..+.......+.. +.... .++++  .++++|
T Consensus         2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g-~~~~~--~p~~~l   77 (143)
T cd08900           2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEA-RYHDI--VPDERI   77 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeE-EEEEe--cCCceE
Confidence            345677999999999999999999999964     2334444445665554443323322 12222 22333  478899


Q ss_pred             EEEEEe--cCC--ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          352 SFEQVE--GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       352 sfr~Ve--GdF--r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .|....  ++-  ....-+++|++.+ ++|+|++....-.. +.  ..  .......+-..+|..|++++++
T Consensus        78 ~~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~-~~--~~--~~~~~~~GW~~~l~~L~~~l~~  143 (143)
T cd08900          78 VYTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFL-DG--DD--DPAGREQGTAALLDNLAAELER  143 (143)
T ss_pred             EEEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecc-cc--cc--hhhhHHHHHHHHHHHHHHHHhC
Confidence            877532  111  1345678999886 46999998664211 01  11  1234567778888888888763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=97.89  E-value=0.00047  Score=64.77  Aligned_cols=134  Identities=19%  Similarity=0.132  Sum_probs=82.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCC--------cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCC
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNL--------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  348 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V--------~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pp  348 (663)
                      |+.+++|+||+++||++++|  .+.+|++.-        ..+.+--+.|+....  ...++.. . ... .++++  .++
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g~~-~-~~g-~v~~v--~p~   72 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDGTE-C-EWG-TVLAW--EPP   72 (149)
T ss_pred             eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCCcE-e-ceE-EEEEE--cCC
Confidence            67899999999999999999  588887532        333444455554332  2222322 1 122 23333  478


Q ss_pred             CeEEEEEEe-cCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          349 QEISFEQVE-GDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       349 rrIsfr~Ve-GdFr-----~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ++|.|.-.. ..+.     ...-+|+|++.++++|+|++....-...+.-.........+..+-..+|..|++.+|+
T Consensus        73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~  149 (149)
T cd08891          73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK  149 (149)
T ss_pred             CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence            899887552 1111     3467899999873579999876643210000012334455677888999999998874

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.88  E-value=0.0011  Score=62.12  Aligned_cols=134  Identities=13%  Similarity=0.102  Sum_probs=84.6

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      ++.+..++||+++||+.+||-+.+.+|+..-    ..+++--+.|+..++...+.++-. +..... ++++  .++++|.
T Consensus         2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~-~~ei--~p~~~l~   77 (142)
T cd07826           2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGV-YHEV--TPPERIV   77 (142)
T ss_pred             EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEE-EEEE--cCCCEEE
Confidence            4567889999999999999999999999753    233444455666554433222211 112222 2232  4778998


Q ss_pred             EEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          353 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       353 fr~VeGd--Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      |...-..  -....-+|+|++.+ ++|+|+.+..+..   .-.-...+...+..+-..+|..|...++
T Consensus        78 ~t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          78 QTEEFEGLPDGVALETVTFTELG-GRTRLTATSRYPS---KEARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             EEeEecCCCCCceEEEEEEEECC-CCEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            8754322  22456788999986 5799998755421   0011124555677888889998888764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=97.87  E-value=7.4e-05  Score=64.51  Aligned_cols=75  Identities=28%  Similarity=0.486  Sum_probs=62.5

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      +..++.|++|++.||++|+|++++++++|.+..                                               
T Consensus         1 ~~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   80 (141)
T cd07812           1 VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTGG   80 (141)
T ss_pred             CcEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEEEecCCCceEEEEecC
Confidence            357899999999999999999999999999886                                               


Q ss_pred             --------------cCC-ceEEEEEEEEecCCCC---CHHHHHHHHhhchHHHHHHHHHH
Q 006041          129 --------------RSS-TTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACR  170 (663)
Q Consensus       129 --------------~~~-gT~LtY~v~V~P~f~v---P~~lie~~lr~dLp~nL~Ai~~~  170 (663)
                                    .++ +|.++|++.+.+..++   +..++...++..+...+.+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T cd07812          81 GGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR  140 (141)
T ss_pred             CCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence                          124 8999999999999887   56677777777777777776653

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=97.84  E-value=0.001  Score=64.14  Aligned_cols=135  Identities=16%  Similarity=0.325  Sum_probs=89.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHh-ccCcccccCcCC-cEEEEEeecCC---EEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          276 CVVASITVKAPVSEVWNVMT-AYETLPEIVPNL-AISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLT-DyEnyPeWiP~V-~sSrVLer~gn---~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      .+..++.+++|++.+|+++. .-..+|.-+|++ +++++++.+++   .++.+.-+..+-  ..+ .+-.++..+...+.
T Consensus         5 ~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~--~~~-~Kekve~~D~~~~~   81 (151)
T PF00407_consen    5 KLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGP--FKY-VKEKVEAIDEENKT   81 (151)
T ss_dssp             EEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSS--EEE-EEEEEEEEETTTTE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCC--cce-eEEEEEeecCCCcE
Confidence            57889999999999999999 555678888886 55688887543   454443333332  111 12234555556699


Q ss_pred             EEEEEEecCCc----eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          351 ISFEQVEGDFD----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       351 Isfr~VeGdFr----~f~G~WtLeplgdGgTrVtYtve~eP~~gg~-LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      +.|..++|++-    .|...-.+.|.++|+|.+++++++++..+.. .|.-.+..     +..+++++.+++-
T Consensus        82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayLl  149 (151)
T PF00407_consen   82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYLL  149 (151)
T ss_dssp             EEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             EEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHHh
Confidence            99999999853    6666666667788889999999999864332 34333332     5566666666543

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=97.52  E-value=0.00029  Score=63.58  Aligned_cols=77  Identities=25%  Similarity=0.204  Sum_probs=61.0

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccc--cee---------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPN--LAC---------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~--l~~---------------------------------------------  128 (663)
                      |..++.|+||++.||++|+|+++++++.|+  ..+                                             
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~~~~~~~i~~~~~~~~i~~~~~~~~~   81 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEEGWVSGEVLEVEPPRRLVFTWAFSDE   81 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCEEeccEEEEEEcCCCeEEEEecccCC
Confidence            678899999999999999999999999995  222                                             


Q ss_pred             --------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 --------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 --------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                    .+++|+|+|+.+..+.. .|.......+++..+..|..|++.||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~E~  139 (139)
T cd07814          82 TPGPETTVTVTLEETGGGTRLTLTHSGFPEE-DAEQEAREGMEEGWTGTLDRLKALLEK  139 (139)
T ss_pred             CCCCceEEEEEEEECCCCEEEEEEEEccChH-hHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence                          23668888888777763 224467777888889999999988873

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=97.48  E-value=0.00037  Score=62.56  Aligned_cols=77  Identities=25%  Similarity=0.334  Sum_probs=62.2

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      |+.++.|++|++.||+.|+|.+++.++.|.+..                                               
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~~~~   81 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPPRSFKPRVTEVEPPRRLAWRGGLPF   81 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCcEEEEEEEEEEcCCCEeEEEecCCC
Confidence            678999999999999999999999999987653                                               


Q ss_pred             --------------c-CCceEEEEEEEEecC-CCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 --------------R-SSTTTLSYEVNVIPR-LNFPAIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 --------------~-~~gT~LtY~v~V~P~-f~vP~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                    . +++|+++++....+. .++...++...+++++...|.+|++.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E  141 (141)
T cd07822          82 PGLLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE  141 (141)
T ss_pred             CcEeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence                          2 467888887655432 1233457999999999999999999886

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=97.47  E-value=0.00092  Score=67.56  Aligned_cols=95  Identities=9%  Similarity=0.136  Sum_probs=84.0

Q ss_pred             CCceEEEEEEccCCcceEEEEEEEccCHHHHH-HHhhCchhhhhcccccee-----------------------------
Q 006041           79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW-~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      .++|.|-....+....-..+++.|++|++.++ .+|.|.++..+..+++.+                             
T Consensus        34 ~~gi~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~R  113 (209)
T cd08906          34 DNGDTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPR  113 (209)
T ss_pred             CCCCEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCC
Confidence            46788888778765577899999999999998 689999999999988887                             


Q ss_pred             --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041          129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS  158 (663)
Q Consensus       129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~  158 (663)
                                                                        .+++|.++|.+.+.|+.++|..++.+.+.+
T Consensus       114 DfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~  193 (209)
T cd08906         114 DFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAA  193 (209)
T ss_pred             ceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence                                                              135799999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHH
Q 006041          159 DLPVNLQALACRAER  173 (663)
Q Consensus       159 dLp~nL~Ai~~~Ae~  173 (663)
                      -.-..|.+||++++.
T Consensus       194 ~~~~~~~~LR~~~~~  208 (209)
T cd08906         194 TMFEFASHLRQRIRD  208 (209)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999863

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=97.35  E-value=0.0053  Score=62.44  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=105.2

Q ss_pred             CcccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHH-HHHHHHhccCcccccCcCCcEEEE
Q 006041          234 SSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVS-EVWNVMTAYETLPEIVPNLAISKI  312 (663)
Q Consensus       234 ~~~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpe-qVWaVLTDyEnyPeWiP~V~sSrV  312 (663)
                      +.+...+|....+.+++       +|+.+...    .+-..+..++++.|+++|. .++++|.|   -..|=+++.++++
T Consensus        22 ~~ek~kgW~~~~~~~~v-------ev~~kk~~----d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~   87 (205)
T cd08907          22 ASERFKGWHSAPGPDNT-------ELACKKVG----DGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQV   87 (205)
T ss_pred             hhhccCCceeecCCCCc-------EEEEEeCC----CCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhh
Confidence            45667899999999999       99999633    2344678999999986655 55788888   5569999999988


Q ss_pred             Eee--cCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCC---eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeE
Q 006041          313 LSR--ENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQ---EISFEQVE-------GDFD--SFQGKWLFEQLGSHHT  377 (663)
Q Consensus       313 Ler--~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~ppr---rIsfr~Ve-------GdFr--~f~G~WtLeplgdGgT  377 (663)
                      +++  .++.+..|....  +..+.-+.-++++--. ..++   -|.=..++       |.++  .+.-.+-++|.+.|+|
T Consensus        88 Ie~Ld~n~dI~yY~~~~--~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s  165 (205)
T cd08907          88 IEALENNTEVYHYVTDS--MAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRS  165 (205)
T ss_pred             heeecCCCEEEEEEecC--CCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCe
Confidence            876  233443343211  1000001111111100 0010   01001111       1122  3344456899988899


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      +|+|-..++|+  |.+|.|. ++....-+...|..||+-
T Consensus       166 ~ltyi~rvD~r--G~~P~Wy-nk~~g~~~a~~l~~ir~s  201 (205)
T cd08907         166 RLTHICRADLR--GRSPDWY-NKVFGHLCAMEVARIRDS  201 (205)
T ss_pred             EEEEEEEeCCC--CCCcHHH-HHhHHHHHHHHHHHHHhh
Confidence            99999999996  7899998 999999999999988864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0079  Score=57.51  Aligned_cols=136  Identities=15%  Similarity=0.112  Sum_probs=81.2

Q ss_pred             eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          273 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       273 ~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      .+..++.+.+|+||++.||+.+||-+.+++|+. -.-++.--+.++..++...+..+-. +.+... ++++  .++++|.
T Consensus         6 ~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~~-~~~~~~-~~~v--~p~~rIv   80 (149)
T COG3832           6 EDRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGPV-HSFEGE-YLEV--VPPERIV   80 (149)
T ss_pred             CCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCCe-eecceE-EEEE--cCCcEEE
Confidence            366799999999999999999999999999998 2212222233343333333333311 223333 3344  4788887


Q ss_pred             EEEEecC----CceeEEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHHH--HHHHHhhHHHHHHHHHHHHH
Q 006041          353 FEQVEGD----FDSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAIM--EEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       353 fr~VeGd----Fr~f~G~WtLeplgdG-gTrVtYtve~eP~~gg~LP~~L~--er~vre~L~~~L~ALR~RAE  418 (663)
                      |.-....    +..-..+|+|.+..+| +|++......     ..+++.-.  ...+..+...++..|++.++
T Consensus        81 ~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          81 FTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGG-----GFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             EEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeec-----cccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            7754422    2245788889886555 3443333322     12333322  22347788888888888765

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=97.25  E-value=0.0026  Score=64.10  Aligned_cols=94  Identities=15%  Similarity=0.230  Sum_probs=81.8

Q ss_pred             CCceEEEEEEccCCcceEEEEEEEccCHHHHH-HHhhCchhhhhcccccee-----------------------------
Q 006041           79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW-~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      .+++.|-....+....-.+++..|++|+++|+ .++.|+++..+..+++.+                             
T Consensus        34 ~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~R  113 (209)
T cd08905          34 ENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPR  113 (209)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCcc
Confidence            45666666777654477899999999999999 777899999999999877                             


Q ss_pred             -----------------------------------------------c---CCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041          129 -----------------------------------------------R---SSTTTLSYEVNVIPRLNFPAIFLERIIRS  158 (663)
Q Consensus       129 -----------------------------------------------~---~~gT~LtY~v~V~P~f~vP~~lie~~lr~  158 (663)
                                                                     .   ++.|.++|.+.+.|+.++|..|+.+.+.+
T Consensus       114 D~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~  193 (209)
T cd08905         114 DFVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQ  193 (209)
T ss_pred             ceEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHH
Confidence                                                           1   26799999999999999999999999999


Q ss_pred             chHHHHHHHHHHHH
Q 006041          159 DLPVNLQALACRAE  172 (663)
Q Consensus       159 dLp~nL~Ai~~~Ae  172 (663)
                      -.-..|.+||+.++
T Consensus       194 ~~~~~~~~Lr~~~~  207 (209)
T cd08905         194 TQVDFANHLRQRMA  207 (209)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999999886

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=97.21  E-value=0.00097  Score=62.71  Aligned_cols=31  Identities=32%  Similarity=0.528  Sum_probs=27.7

Q ss_pred             EEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           98 AEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        98 a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      +++.|++|++.||+.|+|+++|+.-||++.+
T Consensus         1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~   31 (140)
T PF06240_consen    1 GSFEVPAPPEKVWAFLSDPENLARCIPGVES   31 (140)
T ss_dssp             EEEEECS-HHHHHHHHT-HHHHHHHSTTEEE
T ss_pred             CcEEecCCHHHHHHHhcCHHHHHhhCCCcEE
Confidence            5789999999999999999999999999998

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=97.19  E-value=0.00086  Score=64.81  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=32.4

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      +++++++|++|+++||+-|+|-|++++-||++.+
T Consensus         2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs   35 (146)
T COG3427           2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQS   35 (146)
T ss_pred             cccceEEecCCHHHHHHHhcCHHHHHhhcCCcce
Confidence            4678999999999999999999999999999999

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.13  E-value=0.0087  Score=55.06  Aligned_cols=120  Identities=15%  Similarity=0.129  Sum_probs=74.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV  356 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V  356 (663)
                      +..++.|+||+++||+.+||-+.+..|+....  .+--+.|+...+.    .+.    +.. .++++  .++++|.|...
T Consensus         2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~--~~d~~~GG~~~~~----~g~----~~g-~~~~i--~p~~~l~~~w~   68 (126)
T cd08892           2 ISLTETFQVPAEELYEALTDEERVQAFTRSPA--KVDAKVGGKFSLF----GGN----ITG-EFVEL--VPGKKIVQKWR   68 (126)
T ss_pred             eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCc--eecCCCCCEEEEe----CCc----eEE-EEEEE--cCCCEEEEEEE
Confidence            56678999999999999999999999986433  2222344443322    111    111 22333  47788877654


Q ss_pred             ec--C-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 006041          357 EG--D-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE  418 (663)
Q Consensus       357 eG--d-Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~-~L~ALR~RAE  418 (663)
                      ..  + -....-.|+|++.+ ++|+|++....-+.      . - ...+..+-.. .+..|++.++
T Consensus        69 ~~~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~------~-~-~~~~~~GW~~~~~~~l~~~~~  125 (126)
T cd08892          69 FKSWPEGHYSTVTLTFTEKD-DETELKLTQTGVPA------G-E-EERTREGWERYYFESIKQTFG  125 (126)
T ss_pred             cCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCC------c-h-HHHHHhhHHHHHHHHHHHHhC
Confidence            21  1 12456789999975 56999998765431      1 1 1334555554 7788877654

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=97.13  E-value=0.005  Score=62.14  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=85.7

Q ss_pred             cCCceEEEEEEccCCc-ceEEEEEEE-ccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041           78 EQRKVHCEVEVVSWRE-RRIKAEMLV-NADVDSVWNALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~-rrV~a~i~i-~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      ..++|.|-....+.+. ..+.+...+ .++++.++++|.|.+.-.+..|++.+                           
T Consensus        30 ~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~R  109 (222)
T cd08871          30 NKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNR  109 (222)
T ss_pred             cCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCC
Confidence            3456888877777654 458888877 68999999999999999988888866                           


Q ss_pred             ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041          129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDL  160 (663)
Q Consensus       129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL  160 (663)
                                                                      .+++|.++|.+.+.|+.++|..++..++.+..
T Consensus       110 DfV~~r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~  189 (222)
T cd08871         110 DFVNLRSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSLPKWVVNKATTKLA  189 (222)
T ss_pred             eEEEEEEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHh
Confidence                                                            24789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 006041          161 PVNLQALACRAERSFGWN  178 (663)
Q Consensus       161 p~nL~Ai~~~Ae~~~~~~  178 (663)
                      |..|..|++.|++.-+..
T Consensus       190 ~~~l~~l~k~~~~y~~~~  207 (222)
T cd08871         190 PKVMKKLHKAALKYPEWK  207 (222)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998764443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=96.97  E-value=0.0026  Score=58.84  Aligned_cols=32  Identities=13%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             EEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           97 KAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        97 ~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      ..++.|++|++.||+.++|.++|.+++|.+.+
T Consensus         2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~   33 (137)
T cd07820           2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLE   33 (137)
T ss_pred             eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCC
Confidence            57899999999999999999999999998755

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=96.95  E-value=0.0045  Score=61.85  Aligned_cols=93  Identities=12%  Similarity=0.128  Sum_probs=81.9

Q ss_pred             ceEEEEEEccCCcceEEEEEEEccCHHHHHH-HhhCchhhhhcccccee-------------------------------
Q 006041           81 KVHCEVEVVSWRERRIKAEMLVNADVDSVWN-ALTDYERLADFVPNLAC-------------------------------  128 (663)
Q Consensus        81 ~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~-vLTDYe~la~fiP~l~~-------------------------------  128 (663)
                      +|.|-....+....-..+...+++|++.|++ ++.|.+...+..+++.+                               
T Consensus        35 ~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDf  114 (208)
T cd08868          35 GDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDF  114 (208)
T ss_pred             CCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccce
Confidence            7888888888755668999999999999986 66799999988888776                               


Q ss_pred             ---------------------------------------------c---CCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041          129 ---------------------------------------------R---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDL  160 (663)
Q Consensus       129 ---------------------------------------------~---~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL  160 (663)
                                                                   .   +++|.++|.+.+.|+.++|..++...+.+-+
T Consensus       115 V~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~  194 (208)
T cd08868         115 VSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVL  194 (208)
T ss_pred             EEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHH
Confidence                                                         1   2569999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 006041          161 PVNLQALACRAER  173 (663)
Q Consensus       161 p~nL~Ai~~~Ae~  173 (663)
                      +..|.+||+.++.
T Consensus       195 ~~~~~~Lr~~~~~  207 (208)
T cd08868         195 LDFMKHLRKRIAT  207 (208)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=96.82  E-value=0.0078  Score=56.29  Aligned_cols=122  Identities=12%  Similarity=0.108  Sum_probs=70.5

Q ss_pred             EcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEecCC--
Q 006041          283 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDF--  360 (663)
Q Consensus       283 I~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGdF--  360 (663)
                      ++||+++||+.+||-+.+.+|.-. ..+++--+.|+..++..    +.    ... .++++  .++++|.|...-...  
T Consensus         1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~----~~----~~G-~~~ev--~pp~rlv~tw~~~~~~~   68 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN----GS----VEG-EFTEL--EKPKKIVQKWRFRDWEE   68 (132)
T ss_pred             CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec----Cc----eEE-EEEEE--cCCCEEEEEEecCCCCC
Confidence            479999999999999999999521 12333334455433221    11    122 22333  478888877543221  


Q ss_pred             -ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHH
Q 006041          361 -DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYV  417 (663)
Q Consensus       361 -r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~-~L~ALR~RA  417 (663)
                       .....+|+|++.++++|+|+....--|.... .........+.++... .|+.|+..+
T Consensus        69 ~~~s~vt~~~~~~~~g~T~lt~~~~g~~~~~~-~~~~~~~~~~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         69 DVYSKVTIEFRAVEEDHTELKLTQTGIPSLDK-FGNGGCLERCRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCceEEEEEEEeCCCCcEEEEEEEecCccccc-cCCCchhhHHHhChHHHHHHHHHHHh
Confidence             1346789999976668999998773221100 0000223345566666 477777664

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=96.39  E-value=0.046  Score=55.05  Aligned_cols=96  Identities=15%  Similarity=0.060  Sum_probs=83.0

Q ss_pred             cCCceEEEEEEccC-CcceEEEEEEE-ccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041           78 EQRKVHCEVEVVSW-RERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~-~~rrV~a~i~i-~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      ..++|.|-....+. +...+.|...+ ++|++.+.++|.|.+.-.+..+++.+                           
T Consensus        28 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~  107 (207)
T cd08911          28 EKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFAN  107 (207)
T ss_pred             EcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCC
Confidence            45678888887774 44568887766 99999999999999999988888877                           


Q ss_pred             ------------------------------------------------c------CCceEEEEEEEEecCCCCCHHHHHH
Q 006041          129 ------------------------------------------------R------SSTTTLSYEVNVIPRLNFPAIFLER  154 (663)
Q Consensus       129 ------------------------------------------------~------~~gT~LtY~v~V~P~f~vP~~lie~  154 (663)
                                                                      +      .+||.++|.....|+.++|..++..
T Consensus       108 RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~  187 (207)
T cd08911         108 RDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSW  187 (207)
T ss_pred             ccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHH
Confidence                                                            1      3588999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHH
Q 006041          155 IIRSDLPVNLQALACRAER  173 (663)
Q Consensus       155 ~lr~dLp~nL~Ai~~~Ae~  173 (663)
                      +..+-+|..|+.|++.|.+
T Consensus       188 ~~~~~~~~~l~~l~~a~~~  206 (207)
T cd08911         188 VAMSGMPDFLERLRNAALK  206 (207)
T ss_pred             HHHhhccHHHHHHHHHHhc
Confidence            9999999999999999864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=96.26  E-value=0.018  Score=57.79  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=85.8

Q ss_pred             cCCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041           78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------  128 (663)
                      ..+++.|-....+.+. --+.++..|++|++.+.++|.|.+...+.+|++.+                            
T Consensus        29 ~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD  108 (215)
T cd08877          29 ESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNRE  108 (215)
T ss_pred             cCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceEecceE
Confidence            3568888888888874 66999999999999999999999999999999776                            


Q ss_pred             ------------------------------------------------------------cCCceEEEEEEEEecCCC-C
Q 006041          129 ------------------------------------------------------------RSSTTTLSYEVNVIPRLN-F  147 (663)
Q Consensus       129 ------------------------------------------------------------~~~gT~LtY~v~V~P~f~-v  147 (663)
                                                                                  .++.|.++|.+.+.|+.. +
T Consensus       109 ~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~I  188 (215)
T cd08877         109 AVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLV  188 (215)
T ss_pred             EEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccC
Confidence                                                                        135699999999999998 9


Q ss_pred             CHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          148 PAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       148 P~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                      |..|+....++-.+..|.+|++.|+.
T Consensus       189 P~~liN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         189 PKSLLNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999974

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]

Probab=96.12  E-value=0.25  Score=50.93  Aligned_cols=170  Identities=10%  Similarity=0.061  Sum_probs=110.3

Q ss_pred             ccCCCceeecccccCCCCcccceEEE-EeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEE
Q 006041          236 DLNSKWGVFGQVCRLDRPCFVDEVHL-RRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKIL  313 (663)
Q Consensus       236 ~~~~~W~~~~~~~gi~~~~~~deV~l-Rr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVL  313 (663)
                      ++...|+..-+..++       .+.- |+     +.+| .+.++...+. +++|+.|++++.|-|==+.|=..+...+.+
T Consensus        26 ~~~~~We~~~~k~~~-------~i~~q~~-----~~~g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~i   92 (219)
T KOG2761|consen   26 DAGQGWELVMDKSTP-------SIWRQRR-----PKTG-LYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETI   92 (219)
T ss_pred             CcccchhhhcccCCc-------eEEEEcc-----cCCC-CEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheee
Confidence            445699999999988       7666 32     3344 6656555555 699999999999999999999999999999


Q ss_pred             eec---CCEEEEEEEeccceeE-EEEE-EEEEEEEeeeCCCeEEEEEEe--------cCCc--eeEEEEEEE----EcCC
Q 006041          314 SRE---NNKVRILQEGCKGLLY-MVLH-ARVVMDICEQHEQEISFEQVE--------GDFD--SFQGKWLFE----QLGS  374 (663)
Q Consensus       314 er~---gn~vrv~q~g~~gll~-~~~~-~rvVLDV~E~pprrIsfr~Ve--------GdFr--~f~G~WtLe----plgd  374 (663)
                      +..   |+.+..|...+-.++. -.+. .+.+++..+ ....|.-..+.        +..+  .+...|.+.    ..++
T Consensus        93 e~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~-k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~  171 (219)
T KOG2761|consen   93 EEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDE-KDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDE  171 (219)
T ss_pred             eecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCC-ceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCC
Confidence            876   4455444443321110 0011 111111100 11112112221        2222  667778777    3345


Q ss_pred             CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          375 HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       375 GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      .+|.+.|.....|  ++.+|.++++..++.+++..++-+-..+.+..
T Consensus       172 ~~~~~~~~~~~~p--~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~  216 (219)
T KOG2761|consen  172 QGCACEYLYFHNP--GGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQ  216 (219)
T ss_pred             CccEEEEEEEECC--CCCCcHHHHHHHHHhcChHHHHHHHHHHHhhh
Confidence            5799999888888  47899999999999999999888877666543

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=96.05  E-value=0.81  Score=54.26  Aligned_cols=171  Identities=11%  Similarity=0.160  Sum_probs=99.4

Q ss_pred             CCCceeecccccCCCCcccceEEEEeecccccc--CCeeEEEEEEEEEcCCHHHHHHHHhccC-cccccCcCCcEEEEEe
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLEN--GGVHRCVVASITVKAPVSEVWNVMTAYE-TLPEIVPNLAISKILS  314 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~--~g~~r~VrasIvI~APpeqVWaVLTDyE-nyPeWiP~V~sSrVLe  314 (663)
                      .+.|+.++-.+|+       .+.-+-.|.  +.  .+-.+.+++.-+|+|++++||+.|.+.. .-.+|-..+.+.++++
T Consensus       197 ~~~Wr~~~c~NGl-------RiF~e~~~~--~~~~~~~~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE  267 (719)
T PLN00188        197 RKHWRLLQCQNGL-------RIFEELLEV--DYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVE  267 (719)
T ss_pred             cCCeEEEEeeccc-------eeehhhhcc--ccccccCCceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEE
Confidence            4599999999999       444332221  10  1123678999999999999999998877 7778999999999998


Q ss_pred             ec-CCEEEEEEEecccee-EEEEEEEEE-EEEe-eeCCC--eEEEEEEe--------cCCce--eEEEEEEEEcC--C--
Q 006041          315 RE-NNKVRILQEGCKGLL-YMVLHARVV-MDIC-EQHEQ--EISFEQVE--------GDFDS--FQGKWLFEQLG--S--  374 (663)
Q Consensus       315 r~-gn~vrv~q~g~~gll-~~~~~~rvV-LDV~-E~ppr--rIsfr~Ve--------GdFr~--f~G~WtLeplg--d--  374 (663)
                      +- ++...+|.+...+.+ .+.+.-..+ +++. ...+.  .+.+..+.        |.++.  --|-|.+.|+.  +  
T Consensus       268 ~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~  347 (719)
T PLN00188        268 EVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGR  347 (719)
T ss_pred             EecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCC
Confidence            74 444344433211110 000000001 0111 11222  23333333        33332  24889999962  2  


Q ss_pred             CeEEEEEEEEEEeccCccchHHHHHHHHHh---hHHHHHHHHHHHHHhh
Q 006041          375 HHTLLKYSVESKMQKNSLLSEAIMEEVIYE---DLPSNLCAIRDYVEKR  420 (663)
Q Consensus       375 GgTrVtYtve~eP~~gg~LP~~L~er~vre---~L~~~L~ALR~RAEkr  420 (663)
                      .+|.|++-+.++++  ||.|... ..+-+.   .+...+.+||+...+.
T Consensus       348 ~r~lv~~~lqtDlk--GW~~~y~-~s~~~~~~l~mL~~VAgLrE~~~~~  393 (719)
T PLN00188        348 PRTQVQHLMQIDLK--GWGVGYI-PSFQQHCLLQMLNSVAGLREWFSQT  393 (719)
T ss_pred             CceEEEEEEEEccC--ccccccC-ccccccchHHHHHHHHHHHHHHhcC
Confidence            48999999999985  7776543 222223   3334455666665443

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=95.86  E-value=0.06  Score=54.37  Aligned_cols=96  Identities=8%  Similarity=0.000  Sum_probs=80.8

Q ss_pred             cCCceEEEEEEccCC-cceEEEEEEEc-cCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041           78 EQRKVHCEVEVVSWR-ERRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~-~rrV~a~i~i~-ap~e~VW~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      +.++|.|-....+.. .....|...++ ++++.+.++|.|.+.-.+..+++.+                           
T Consensus        32 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~~~i~y~~~k~PwPvs~RD~  111 (207)
T cd08910          32 ESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDGETVIYWEVKYPFPLSNRDY  111 (207)
T ss_pred             ecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCCCEEEEEEEEcCCCCCCceE
Confidence            456777777655544 45699999998 7999999999998888777776554                           


Q ss_pred             --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041          129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS  158 (663)
Q Consensus       129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~  158 (663)
                                                                        ..++|.++|...+.|+.++|..++..+..+
T Consensus       112 V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~IP~wlvN~~~~~  191 (207)
T cd08910         112 VYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMIPSWLINWAAKN  191 (207)
T ss_pred             EEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcchHHHHHHHHHH
Confidence                                                              236799999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHH
Q 006041          159 DLPVNLQALACRAER  173 (663)
Q Consensus       159 dLp~nL~Ai~~~Ae~  173 (663)
                      -+|..|+.|++.|.+
T Consensus       192 ~~~~~l~~l~ka~~~  206 (207)
T cd08910         192 GVPNFLKDMQKACQN  206 (207)
T ss_pred             hhHHHHHHHHHHHhc
Confidence            999999999999864

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=95.65  E-value=0.13  Score=52.01  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=75.7

Q ss_pred             cCCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhCchhh--hhcccccee--------------------------
Q 006041           78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERL--ADFVPNLAC--------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTDYe~l--a~fiP~l~~--------------------------  128 (663)
                      ..+++.|...+-.... ....++..|++++++|++.|-|.+..  .+..+++.+                          
T Consensus        29 ~~~~i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~v  108 (208)
T cd08903          29 RTNEVAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKII  108 (208)
T ss_pred             cCCCEEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCc
Confidence            3457888887542222 33889999999999999999877554  455555554                          


Q ss_pred             ------------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHH
Q 006041          129 ------------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLER  154 (663)
Q Consensus       129 ------------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~  154 (663)
                                                                            .+++|.++|.+.+.|+.++|..++.+
T Consensus       109 s~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP~~lvn~  188 (208)
T cd08903         109 SPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLPQTVVDS  188 (208)
T ss_pred             CCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcCHHHHHH
Confidence                                                                  13579999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHH
Q 006041          155 IIRSDLPVNLQALACRAER  173 (663)
Q Consensus       155 ~lr~dLp~nL~Ai~~~Ae~  173 (663)
                      .+.+-+-..|..||+....
T Consensus       189 ~~~~~~~~~~~~Lr~~~~~  207 (208)
T cd08903         189 FFPASMAEFYNNLTKAVKA  207 (208)
T ss_pred             HhhHHHHHHHHHHHHHHhh
Confidence            9999999999999987643

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=95.38  E-value=0.067  Score=51.02  Aligned_cols=78  Identities=24%  Similarity=0.327  Sum_probs=59.7

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-------------------------------------------
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC-------------------------------------------  128 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-------------------------------------------  128 (663)
                      +.+.|...+.|++|++.||++|||-+++.+..|....                                           
T Consensus         9 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~G~~~~~~~~~~~~~~~~~~v~e~~p~~~l~~~~~~~~~~   88 (157)
T cd08899           9 GGATLRFERLLPAPIEDVWAALTDPERLARWFAPGTGDLRVGGRVEFVMDDEEGPNATGTILACEPPRLLAFTWGEGGGE   88 (157)
T ss_pred             CCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCCCCCcccCceEEEEecCCCCCccceEEEEEcCCcEEEEEecCCCCC
Confidence            3467999999999999999999999999988873221                                           


Q ss_pred             ---------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ---------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ---------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                               .++||.|+|+.+..|..     .....+..-....|..|++.+|+.
T Consensus        89 ~~~~~~l~~~~~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~~  138 (157)
T cd08899          89 SEVRFELAPEGDGTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEGG  138 (157)
T ss_pred             ceEEEEEEEcCCCEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcCC
Confidence                     24778888888877655     234555677778888888888753

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=95.25  E-value=0.22  Score=47.45  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=72.8

Q ss_pred             CCceEEEEEEccCC-cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041           79 QRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~-~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      .++|.+-....+.. ...+.+...|+++++.||+.|.|.+....+.|++..                             
T Consensus        23 ~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdf  102 (193)
T cd00177          23 KDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDF  102 (193)
T ss_pred             CCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccE
Confidence            34677766666653 355899999999999999999999888888887777                             


Q ss_pred             -----------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchH
Q 006041          129 -----------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLP  161 (663)
Q Consensus       129 -----------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp  161 (663)
                                                                     .+++|.++|.+.+.|+.++|..++...+.+.+.
T Consensus       103 v~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~  182 (193)
T cd00177         103 VYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIPKSLVNSAAKKQLA  182 (193)
T ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCccHHHHHhhhhhccH
Confidence                                                           247899999999999999999999999985555


Q ss_pred             HHHHHHH
Q 006041          162 VNLQALA  168 (663)
Q Consensus       162 ~nL~Ai~  168 (663)
                      ..++.++
T Consensus       183 ~~~~~~~  189 (193)
T cd00177         183 SFLKDLR  189 (193)
T ss_pred             HHHHHHH
Confidence            5544443

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=95.21  E-value=0.21  Score=50.21  Aligned_cols=92  Identities=8%  Similarity=-0.030  Sum_probs=78.4

Q ss_pred             eEEEEEEcc-CCcceEEEEEEE-ccCHHHHHHHhhCchhhhhcccccee-------------------------------
Q 006041           82 VHCEVEVVS-WRERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLAC-------------------------------  128 (663)
Q Consensus        82 V~v~~e~l~-~~~rrV~a~i~i-~ap~e~VW~vLTDYe~la~fiP~l~~-------------------------------  128 (663)
                      |.|-....+ .+-....+...+ +++++.+.++|.|.+.-.+..+++.+                               
T Consensus        37 i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V  116 (209)
T cd08870          37 YQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYV  116 (209)
T ss_pred             EEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEE
Confidence            666666555 344568899989 56999999999999999988888776                               


Q ss_pred             --------------------------------------------c---CCceEEEEEEEEecCCCCCHHHHHHHHhhchH
Q 006041          129 --------------------------------------------R---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLP  161 (663)
Q Consensus       129 --------------------------------------------~---~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp  161 (663)
                                                                  .   +++|.++|+....|+..+|..|+.....+-+|
T Consensus       117 ~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~  196 (209)
T cd08870         117 IARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMP  196 (209)
T ss_pred             EEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhH
Confidence                                                        2   25688999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 006041          162 VNLQALACRAER  173 (663)
Q Consensus       162 ~nL~Ai~~~Ae~  173 (663)
                      ..|+.|++.+.+
T Consensus       197 ~~l~~l~~a~~~  208 (209)
T cd08870         197 GFLKKLENALRK  208 (209)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998853

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=95.15  E-value=0.094  Score=52.44  Aligned_cols=89  Identities=15%  Similarity=0.013  Sum_probs=74.0

Q ss_pred             cCCceEEEEEEccCCc--ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041           78 EQRKVHCEVEVVSWRE--RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~--rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      +.++|.|-..+++.+.  +-+.+.+.|++++++|++.|.|+.  .+..+++.+                           
T Consensus        26 ~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~R  103 (197)
T cd08869          26 SSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTR  103 (197)
T ss_pred             cCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCc
Confidence            4668999999997763  457999999999999999998863  666666666                           


Q ss_pred             -------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041          129 -------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSD  159 (663)
Q Consensus       129 -------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~d  159 (663)
                                                                       .+++|+++|.+.+.|+.++|..++...- +-
T Consensus       104 DfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP~wl~N~~~-~~  182 (197)
T cd08869         104 DYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSPEWYNKVYG-HL  182 (197)
T ss_pred             eEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCCceeecchH-hH
Confidence                                                             2367999999999999999999955554 88


Q ss_pred             hHHHHHHHHH
Q 006041          160 LPVNLQALAC  169 (663)
Q Consensus       160 Lp~nL~Ai~~  169 (663)
                      ++.+|..||+
T Consensus       183 ~~~~~~~l~~  192 (197)
T cd08869         183 CARELLRIRD  192 (197)
T ss_pred             HHHHHHHHHh
Confidence            9999999986

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=95.14  E-value=0.035  Score=50.90  Aligned_cols=47  Identities=13%  Similarity=0.201  Sum_probs=38.2

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------cCCceEEEEEEEE
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------RSSTTTLSYEVNV  141 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------~~~gT~LtY~v~V  141 (663)
                      +|+.++.|+||++.||++|||++++.+..|+...         ..-|+.+.|.+..
T Consensus         1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~   56 (144)
T cd07825           1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRL   56 (144)
T ss_pred             CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEc
Confidence            4789999999999999999999999999985221         2356777777764

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=95.12  E-value=0.092  Score=47.34  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=27.5

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      +..++.|+||++.||++|||.+++.+..+.
T Consensus         2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~   31 (136)
T cd08893           2 FVYVTYIRATPEKVWQALTDPEFTRQYWGG   31 (136)
T ss_pred             eEEEEEecCCHHHHHHHHcCchhhhheecc
Confidence            567899999999999999999999998876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=95.05  E-value=0.82  Score=44.25  Aligned_cols=138  Identities=20%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             EEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEE--EEE-eccc-------eeEEEEEEEEEEEE
Q 006041          278 VASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRI--LQE-GCKG-------LLYMVLHARVVMDI  343 (663)
Q Consensus       278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv--~q~-g~~g-------ll~~~~~~rvVLDV  343 (663)
                      ..++.+++|+++||++++|-+-|..=+..+    ..+..+..+++..++  .+. ....       ++.-......+-..
T Consensus         2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w   81 (159)
T PF10698_consen    2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW   81 (159)
T ss_pred             eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE
Confidence            467889999999999999976554433332    333334445544332  221 1101       11000111111111


Q ss_pred             eeeCCCeE--EEEE-EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          344 CEQHEQEI--SFEQ-VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       344 ~E~pprrI--sfr~-VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      .-..+...  .+.. +.|.--.+.|.-+|++.+ ++|+++++.+++.+  .|+-+..+++.+...+...+..-.+.+.
T Consensus        82 ~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~-~gt~~~~~g~v~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~~~  156 (159)
T PF10698_consen   82 TPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDG-GGTRLTVEGEVKVK--VPLVGGKIEKAVAENLRKLLEAEQEFTA  156 (159)
T ss_pred             ecCCCCeEEEEEEEEecCceEEEEEEEEEecCC-CCEEEEEEEEEEEE--EccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00012222  2221 225445889999999955 47999999998864  5566667888888888777777666554

The function is not known.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=94.35  E-value=0.4  Score=47.90  Aligned_cols=93  Identities=15%  Similarity=0.062  Sum_probs=72.4

Q ss_pred             CCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhC--chhhhhcccccee---------------------------
Q 006041           79 QRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTD--YERLADFVPNLAC---------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTD--Ye~la~fiP~l~~---------------------------  128 (663)
                      .++|.|-..+.+... ..+.+...|++++++|.++|-|  .+.....-+++.+                           
T Consensus        30 ~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs  109 (206)
T cd08867          30 VKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLIS  109 (206)
T ss_pred             CCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccC
Confidence            356666666443322 4599999999999999999988  5554433343333                           


Q ss_pred             ------------------------------------------------c-----CCceEEEEEEEEecCCCCCHHHHHHH
Q 006041          129 ------------------------------------------------R-----SSTTTLSYEVNVIPRLNFPAIFLERI  155 (663)
Q Consensus       129 ------------------------------------------------~-----~~gT~LtY~v~V~P~f~vP~~lie~~  155 (663)
                                                                      .     +++|.++|-+.+.|+.++|..++...
T Consensus       110 ~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~  189 (206)
T cd08867         110 PRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQSLVESA  189 (206)
T ss_pred             CcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCcHHHHHhh
Confidence                                                            1     36799999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHH
Q 006041          156 IRSDLPVNLQALACRA  171 (663)
Q Consensus       156 lr~dLp~nL~Ai~~~A  171 (663)
                      +.+-+-..+.+||+..
T Consensus       190 ~~~~~~~~~~~lr~~~  205 (206)
T cd08867         190 MPSNLVNFYTDLVKGV  205 (206)
T ss_pred             hhhhHHHHHHHHHHhc
Confidence            9999999999999863

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=94.04  E-value=0.3  Score=49.74  Aligned_cols=89  Identities=17%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041           78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      .+++|.|-....+..-..+.+.+.|++|+++||++|.|.++-.+..+++.+                             
T Consensus        29 ~~~gI~Vy~k~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~R  108 (205)
T cd08874          29 LEKDVVIYYKVFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPR  108 (205)
T ss_pred             cCCCEEEEEecCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCC
Confidence            567888888877775566889999999999999999999999988888777                             


Q ss_pred             ------------------------------------------------c---C-CceEEEEEEEEecC-CCCCHHHHHHH
Q 006041          129 ------------------------------------------------R---S-STTTLSYEVNVIPR-LNFPAIFLERI  155 (663)
Q Consensus       129 ------------------------------------------------~---~-~gT~LtY~v~V~P~-f~vP~~lie~~  155 (663)
                                                                      .   + +.|.|+|.+++.|+ --+|+-|+...
T Consensus       109 DfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~  188 (205)
T cd08874         109 DFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSL  188 (205)
T ss_pred             eEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHH
Confidence                                                            2   3 46999999999999 79999999988


Q ss_pred             HhhchHHHHHHH
Q 006041          156 IRSDLPVNLQAL  167 (663)
Q Consensus       156 lr~dLp~nL~Ai  167 (663)
                      +.+ .|..+..|
T Consensus       189 ~~~-~p~~~~~~  199 (205)
T cd08874         189 SKR-QPLVIARL  199 (205)
T ss_pred             HHh-ccHHHHHH
Confidence            764 34444433

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=93.87  E-value=0.29  Score=51.02  Aligned_cols=80  Identities=21%  Similarity=0.199  Sum_probs=65.4

Q ss_pred             cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041           78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      +.++|.|-...- ..-..+.+++.+++|+++|+++|.|.++..+..+++.+                             
T Consensus        66 ~~~gI~Vyt~~~-s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RD  144 (240)
T cd08913          66 EKNQVRLYTLEE-DKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQD  144 (240)
T ss_pred             ccCCEEEEEEeC-CCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCe
Confidence            457788887432 22356789999999999999999999999999998888                             


Q ss_pred             --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041          129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS  158 (663)
Q Consensus       129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~  158 (663)
                                                                        .++.|.++|..++.|+ .+|..++...+.+
T Consensus       145 fV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dPG-~LP~~~~N~~~~~  223 (240)
T cd08913         145 FVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATPG-VLPYISTDIAGLS  223 (240)
T ss_pred             EEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCCc-cccHHHhhhhhhc
Confidence                                                              2367999999999998 9999999887765


Q ss_pred             c
Q 006041          159 D  159 (663)
Q Consensus       159 d  159 (663)
                      -
T Consensus       224 ~  224 (240)
T cd08913         224 S  224 (240)
T ss_pred             c
Confidence            3

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=93.71  E-value=0.8  Score=47.47  Aligned_cols=97  Identities=19%  Similarity=0.177  Sum_probs=83.1

Q ss_pred             cCCceEEEEEEccCCcc---eEEEEEEEc-cCHHHHHHHhhCchhhhhcccccee-------------------------
Q 006041           78 EQRKVHCEVEVVSWRER---RIKAEMLVN-ADVDSVWNALTDYERLADFVPNLAC-------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~r---rV~a~i~i~-ap~e~VW~vLTDYe~la~fiP~l~~-------------------------  128 (663)
                      .+++|.|-....+....   .+.|...|+ ++++.+.++|-|.+.-.+...++.+                         
T Consensus        33 ~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs  112 (235)
T cd08872          33 EEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAA  112 (235)
T ss_pred             eCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCC
Confidence            45678888877776532   589999999 9999999999999999988888776                         


Q ss_pred             -------------------------------------------------c--------------------CCceEEEEEE
Q 006041          129 -------------------------------------------------R--------------------SSTTTLSYEV  139 (663)
Q Consensus       129 -------------------------------------------------~--------------------~~gT~LtY~v  139 (663)
                                                                       .                    +++|.++|.+
T Consensus       113 ~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~  192 (235)
T cd08872         113 QRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVA  192 (235)
T ss_pred             CcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEE
Confidence                                                             0                    1348999999


Q ss_pred             EEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          140 NVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       140 ~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                      .+-|+.++|..++..+-.+..|.-|+.+..-....
T Consensus       193 ~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~  227 (235)
T cd08872         193 NVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEK  227 (235)
T ss_pred             EeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999887754

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=93.41  E-value=1.8  Score=41.88  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=76.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEE----EEEE-Eeccce-eEEEEEEEEEEEEeeeCCCe
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV----RILQ-EGCKGL-LYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~v----rv~q-~g~~gl-l~~~~~~rvVLDV~E~pprr  350 (663)
                      +....+|.||+|.||+.-+-..++..--|..+   |+-+.+..+    ++.- ...-++ ..+.|.++.+..- ++++.+
T Consensus         4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~-~d~~~~   79 (153)
T COG4276           4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESG-FDNGSR   79 (153)
T ss_pred             eEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEEeeecc-cCCcce
Confidence            34456799999999999999999877777665   232233222    1110 010111 1246777644322 345677


Q ss_pred             EEEEEEecCCcee--EEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHH
Q 006041          351 ISFEQVEGDFDSF--QGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNL  410 (663)
Q Consensus       351 Isfr~VeGdFr~f--~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L  410 (663)
                      +.=.++.|+|..+  .-...|.+.+ |+|.+.=++.++++. +-+-+.+..+.+.-.+..|+
T Consensus        80 FtDv~i~gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~-g~~~~~~g~~l~q~~l~~mF  139 (153)
T COG4276          80 FTDVCITGPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPA-GTLTGMFGYRLTQLILDLMF  139 (153)
T ss_pred             eeeeeecCCccceeeEEEeeeecCC-CcEEEEeeEEeeccC-cceechhhhhhHHHHHHHHH
Confidence            7777889999975  3333677765 479999999998753 32334444444444444443

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=92.14  E-value=1.6  Score=42.68  Aligned_cols=44  Identities=20%  Similarity=0.337  Sum_probs=41.2

Q ss_pred             CceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          131 STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       131 ~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                      +.|.++|..++.|+.++|..++..++.+.+|..++.+++..++.
T Consensus       160 ~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~  203 (206)
T PF01852_consen  160 GRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQ  203 (206)
T ss_dssp             CEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            45999999999999999999999999999999999999998764

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=92.03  E-value=0.15  Score=46.57  Aligned_cols=32  Identities=34%  Similarity=0.594  Sum_probs=29.8

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhccccc
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNL  126 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l  126 (663)
                      +|..++.|+||++.||+++||.+++.+..|..
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~   33 (145)
T cd08898           2 RIERTILIDAPRERVWRALTDPEHFGQWFGVK   33 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhcChhhhhhccccc
Confidence            68899999999999999999999999998863

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins

Probab=91.51  E-value=2.2  Score=43.53  Aligned_cols=92  Identities=11%  Similarity=0.093  Sum_probs=73.6

Q ss_pred             cCCceEEEEEEc-cCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041           78 EQRKVHCEVEVV-SWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l-~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------  128 (663)
                      ...++.|...+. +....-..++..|+++++.||+.|-|-+...+.=+++.+                            
T Consensus        29 ~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vsp  108 (204)
T cd08904          29 TSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISP  108 (204)
T ss_pred             cCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccC
Confidence            446788887765 344455889999999999999999998888877777666                            


Q ss_pred             ----------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHH
Q 006041          129 ----------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERII  156 (663)
Q Consensus       129 ----------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~l  156 (663)
                                                                          .+++|.|+|-+...|+.|+|..+|++.|
T Consensus       109 RDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~  188 (204)
T cd08904         109 RDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKTM  188 (204)
T ss_pred             ceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHHh
Confidence                                                                1247999999999999999999999998


Q ss_pred             hhchHHHHHHHHH
Q 006041          157 RSDLPVNLQALAC  169 (663)
Q Consensus       157 r~dLp~nL~Ai~~  169 (663)
                      .+.+-.-..-+++
T Consensus       189 ~~~~~~f~~~~~~  201 (204)
T cd08904         189 PTNLVNLILDAKD  201 (204)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666555544

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=90.86  E-value=1.8  Score=42.45  Aligned_cols=83  Identities=12%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             CcceEEEEEEEccCHHH-HHHHhhCchhhhhcccccee------------------------------------------
Q 006041           92 RERRIKAEMLVNADVDS-VWNALTDYERLADFVPNLAC------------------------------------------  128 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~-VW~vLTDYe~la~fiP~l~~------------------------------------------  128 (663)
                      ...-..+...|+++++. +=.++.|.+...++.+++..                                          
T Consensus        43 ~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~  122 (206)
T smart00234       43 PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG  122 (206)
T ss_pred             ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence            34568999999999997 55788999999988888776                                          


Q ss_pred             -----------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 -----------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 -----------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                                         .++.|.++|..++.|+.++|..++...+..-.+..++.+++.+++
T Consensus       123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~  202 (206)
T smart00234      123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQK  202 (206)
T ss_pred             cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHH
Confidence                                               235699999999999999999999999999999999999887766


Q ss_pred             h
Q 006041          174 S  174 (663)
Q Consensus       174 ~  174 (663)
                      .
T Consensus       203 ~  203 (206)
T smart00234      203 H  203 (206)
T ss_pred             H
Confidence            4

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=89.85  E-value=1.4  Score=44.98  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             cCCceEEEEEEccCCc--ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041           78 EQRKVHCEVEVVSWRE--RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~--rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      .++.|++..+|...++  +.+.+.+.|+++++.|.+.|.|.  -....+++.+                           
T Consensus        34 ~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~R  111 (204)
T cd08908          34 TSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPAR  111 (204)
T ss_pred             CCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCc
Confidence            4678999999998887  66999999999999999888776  4555555555                           


Q ss_pred             ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHH
Q 006041          129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLER  154 (663)
Q Consensus       129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~  154 (663)
                                                                      ..++|.|+|.+.+.|+..+|.-++..
T Consensus       112 D~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP~W~~N~  185 (204)
T cd08908         112 DYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHMPEWYTKS  185 (204)
T ss_pred             EEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCCcHHHHhh
Confidence                                                            23789999999999999999998765

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=89.21  E-value=2.2  Score=43.64  Aligned_cols=53  Identities=8%  Similarity=0.064  Sum_probs=40.1

Q ss_pred             eeEE-EEEEEEcC-CCeEEEEEEE--EEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          362 SFQG-KWLFEQLG-SHHTLLKYSV--ESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       362 ~f~G-~WtLeplg-dGgTrVtYtv--e~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      ...| .|++.|.+ ++.+.|+|.+  ..+|  +|.+|.|+.|..+-..+......|-+.
T Consensus       149 y~SgE~~~~~p~~~~~~~~vew~maT~sDp--GG~IP~wl~n~~~p~aI~~Dv~~fl~W  205 (208)
T cd08864         149 YASVEKISYLPDADGKSNKVEWIMATRSDA--GGNIPRWLTKLTIPKAIAKDVPLFLDW  205 (208)
T ss_pred             EEEEEEEEEcCccCCCcCCEEEEEEEeeCC--CCcCcHHHHhccCchHHHHhHHHHHHH
Confidence            6688 88988875 5567899998  8888  478999999887777666555554443

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=88.43  E-value=0.42  Score=44.38  Aligned_cols=30  Identities=30%  Similarity=0.365  Sum_probs=27.0

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      |++++.|+||++.||+++||-++++++.+.
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~   31 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFT   31 (136)
T ss_pred             eeEEEEecCCHHHHHHHhcCHHHhcccccc
Confidence            678999999999999999999999996443

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=87.55  E-value=30  Score=33.86  Aligned_cols=123  Identities=13%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHhc-cCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEecCCcee
Q 006041          285 APVSEVWNVMTA-YETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSF  363 (663)
Q Consensus       285 APpeqVWaVLTD-yEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGdFr~f  363 (663)
                      -+.++||+=|-. .++=-.|+|.+.+|+|+++.++.+.- ...+.+   ..+..+    ++..++.++.|.+..|.    
T Consensus        18 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R-~v~fg~---~~v~E~----v~~~~~~~V~f~~~~Gs----   85 (149)
T PF08982_consen   18 LTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTR-EVTFGG---ATVRER----VTLYPPERVDFAQHDGS----   85 (149)
T ss_dssp             --HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEE-EEEETT---EEEEEE----EEEETTTEEEESSSBEE----
T ss_pred             cCHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEE-EEEECC---cEEEEE----EEEeCCcEEEEEcCCCC----
Confidence            456899986654 55556799999999999988765422 112222   223444    33458899999333221    


Q ss_pred             EEEEEEEEcCCCeEEEEEEEEEEec---cCccc---hHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          364 QGKWLFEQLGSHHTLLKYSVESKMQ---KNSLL---SEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       364 ~G~WtLeplgdGgTrVtYtve~eP~---~gg~L---P~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .-.-.++..++|.=.++|..+...+   .++.-   -......+.+.....+++.||+.+..
T Consensus        86 ~lt~~I~e~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~  147 (149)
T PF08982_consen   86 SLTNIISEPEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE  147 (149)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             EEEEEEecCCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            1222444444555566776665532   01110   01236677777888899999988764

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=87.41  E-value=2.4  Score=41.47  Aligned_cols=82  Identities=13%  Similarity=0.284  Sum_probs=67.0

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      ++..+..|+.+++++++...|++++.+|+|--..                                              
T Consensus         3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e~F~Trv~~~~~~~~I~~~l~~G   82 (146)
T COG2867           3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIRETFTTRVTLKPTARSIDMKLIDG   82 (146)
T ss_pred             eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhheeeeeeeeeeecCchhhhhhhhhcC
Confidence            5778889999999999999999999999998766                                              


Q ss_pred             --------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcc
Q 006041          129 --------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG  176 (663)
Q Consensus       129 --------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~  176 (663)
                                    .+++|.+.+.++-+..=-+=..++...-..-...+..|..+||...+.
T Consensus        83 PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~  144 (146)
T COG2867          83 PFKYLKGGWQFTPLSEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYG  144 (146)
T ss_pred             ChhhhcCceEEEECCCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                          347788888888777655555566666677777888999999988764

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=85.95  E-value=2.9  Score=43.72  Aligned_cols=50  Identities=12%  Similarity=0.037  Sum_probs=43.3

Q ss_pred             cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      +.++|.|-... +.+-..+.+...+++|+++|+++|.|.++-.+..+++.+
T Consensus        62 ~k~gIkVytr~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e  111 (235)
T cd08873          62 STTSVTLYTLE-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRS  111 (235)
T ss_pred             cCCCEEEEEec-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccE
Confidence            56788888877 444456889999999999999999999999999999988

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=85.69  E-value=1.8  Score=45.25  Aligned_cols=50  Identities=12%  Similarity=0.129  Sum_probs=42.5

Q ss_pred             cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      +.++|.|-... +..--.+.+.+.+++|++++.++|.|.++..+.++++.+
T Consensus        63 dkdgIkVytr~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e  112 (236)
T cd08914          63 TVEKIKIYTLE-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLS  112 (236)
T ss_pred             ccCCEEEEEec-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhce
Confidence            56788888874 222356899999999999999999999999999999988

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins

Probab=82.33  E-value=14  Score=38.02  Aligned_cols=92  Identities=13%  Similarity=0.007  Sum_probs=73.5

Q ss_pred             CCceEEEEEEccCC-cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041           79 QRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~-~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      .++|.|..+.-+.. -.--+++-.|+..++.||+.|.+=.+..++=|++.+                             
T Consensus        31 ~~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpR  110 (202)
T cd08902          31 SKDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPR  110 (202)
T ss_pred             CCCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCcc
Confidence            37888888866433 334566777789999999999987766677777766                             


Q ss_pred             ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041          129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDL  160 (663)
Q Consensus       129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL  160 (663)
                                                                      .+..|.|++-++..++.|+|..+|++.|-+.+
T Consensus       111 DFVdv~~~~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~~~~~~  190 (202)
T cd08902         111 EFVDFSYTTQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTAMASTL  190 (202)
T ss_pred             ceEEEEEEEEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHHhhHHH
Confidence                                                            23567899999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 006041          161 PVNLQALACR  170 (663)
Q Consensus       161 p~nL~Ai~~~  170 (663)
                      -.-+..+|++
T Consensus       191 ~~F~~~Lrk~  200 (202)
T cd08902         191 VNFYSDLKKA  200 (202)
T ss_pred             HHHHHHHHHh
Confidence            8888888775

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.

>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans

Probab=81.79  E-value=5.4  Score=34.86  Aligned_cols=52  Identities=25%  Similarity=0.340  Sum_probs=34.6

Q ss_pred             hhHHHHHHHHHHHHHHhCCC-CCCCCHHHHHhcCcccH---HHHHHHhcCHHHHHHHcCc
Q 006041          481 TNIEVLKAELLEFISKHGQE-GFMPMRKQLRKHGRVDV---EKAITRMGGFRRMASLMNL  536 (663)
Q Consensus       481 ~~~~~L~~eL~~f~~~~G~~-g~mP~~~~Lr~~gr~dl---~~aI~~~GG~~~vA~~lg~  536 (663)
                      ++-+.--..|.+|+...|.. -.-|.    +.....||   +++|..+|||.+|.+.=.|
T Consensus         5 ~~~~~F~~~L~~f~~~~g~~~~~~P~----i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W   60 (92)
T PF01388_consen    5 REREQFLEQLREFHESRGTPIDRPPV----IGGKPVDLYKLYKAVMKRGGFDKVTKNKKW   60 (92)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSSS-SE----ETTSE-SHHHHHHHHHHHTSHHHHHHHTTH
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCCc----CCCEeCcHHHHHHHHHhCcCcccCcccchH
Confidence            44556677899999999976 23344    55556665   4599999999776554333

ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	663
3tvr_A	173	Crystal Structure Of Streptomyces Coelicolor Polyke		8e-04
3tl1_A	159	Crystal Structure Of The Streptomyces Coelicolor Wh		8e-04

>pdb|3TVR|A Chain A, Crystal Structure Of Streptomyces Coelicolor Polyketide AromataseCYCLASE WHIE-Orfvi Length = 173

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 281 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 337
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 23  ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 82
Query: 338 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 396
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 83  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 137
Query: 397 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 428
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 138 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 169

>pdb|3TL1|A Chain A, Crystal Structure Of The Streptomyces Coelicolor Whie Orfvi Polyketide AromataseCYCLASE Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 281 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 337
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 9   ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68
Query: 338 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 396
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 69  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123
Query: 397 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 428
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	663
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	1e-25
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	3e-25
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	6e-20
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	1e-06
2le1_A	151	Uncharacterized protein; structural genomics, nort	9e-05

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Length = 159

 Score =  102 bits (255), Expect = 1e-25
 Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 9/152 (5%)

Query: 280 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLH 336
            IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  + 
Sbjct: 8   EITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVS 67

Query: 337 ARVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE 395
            RV     +   + +  ++VE G F      W + +     T+++++ +  M+ ++ + +
Sbjct: 68  ERVA----DPVTRTVRAQRVETGPFQYMNIVWEYAETA-EGTVMRWTQDFAMKPDAPVDD 122

Query: 396 AIMEEVIYEDLPSNLCAIRDYVEKREGDNSLA 427
           A M + I  +  + +  IRD +E+  G+   A
Sbjct: 123 AWMTDNINRNSRTQMALIRDRIEQAAGERRTA 154

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Length = 147

 Score =  100 bits (252), Expect = 3e-25
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 336
           V A   + AP   V+ +    E L   +  +   ++++RE  + R           +   
Sbjct: 4   VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWL 63

Query: 337 ARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSV--ESKMQKNSLLS 394
                D          F   EGDFD ++G W+F   G   T +  ++  E  +     L 
Sbjct: 64  EEEEWDD---ENLRNRFFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLL 119

Query: 395 EAIMEEVIYEDLPSNLCAIRDYVE 418
             ++++++ E++ S L  + + V 
Sbjct: 120 RKLVQKLMQENVESLLKGLEERVL 143

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Length = 169

 Score = 86.6 bits (214), Expect = 6e-20
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 9/160 (5%)

Query: 280 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLH 336
           SI V AP   VW+V    E  PE+    A ++IL ++ +        +    G ++  + 
Sbjct: 8   SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVS 67

Query: 337 ARVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE 395
            RV     ++  + +   +VE G F      W +  +    T +++  E  M+  +    
Sbjct: 68  HRVP----DKGSRTVRAHRVETGPFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDN 122

Query: 396 AIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTN 435
           A M   +     +N+  I+  +E R  +      SV  T 
Sbjct: 123 AHMTAHLNTTTRANMERIKKIIEDRHREGQRTPASVLPTE 162

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Length = 172

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMV 334
           R V  ++TV AP   VW V+       +I P     +IL        +            
Sbjct: 5   RHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEINT 64

Query: 335 LHARVVMDICEQHEQEISFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSL 392
             +R  +D      + I++ Q+E         G+W    L +  T L  + +    + + 
Sbjct: 65  WTSRRDLD---PARRVIAYRQLETAPIVGHMSGEWRAFTLDAERTQLVLTHDFVT-RAAG 120

Query: 393 LSEAI------------MEEVIYEDLPSNLCAIRDYVEKREGDNSLAND 429
               +            +E V+  +  ++L A+    E+R         
Sbjct: 121 DDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERRVRAAGGVGT 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 90/633 (14%), Positives = 175/633 (27%), Gaps = 214/633 (33%)

Query: 73  KEDEDEQRKVHCEVEV--------VSWRERRI------KAEMLVNADVDSVWNALTDYER 118
           K+ +D  + +  + E+              R+      K E +V   V+ V     +Y+ 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKF 93

Query: 119 LADFVPNLACRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWN 178
           L   +     + S  T  Y        N   +F      +   V+      R +      
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVS------RLQ------ 135

Query: 179 QKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLN 238
                ++ +  EL                P K     G           G          
Sbjct: 136 -PYLKLRQALLELR---------------PAKNVLIDGVLG-------SG---------- 162

Query: 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVH-----RCVVASITVKAPVSEVWNV 293
            K  V   VC              + D       +       C      ++     ++ +
Sbjct: 163 -KTWVALDVCL-------SYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 294 MTAYETLPEIVPNLAISKILSRENNKVRILQE--GCKGLLYM--VLHARVV--MDI-CEQ 346
              + +  +   N+   +I S +    R+L+       LL +  V +A+     ++ C  
Sbjct: 210 DPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-- 266

Query: 347 HEQEISFEQV------EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEE 400
                   ++      +   D             HH++     E K    SLL + +  +
Sbjct: 267 --------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYL--D 312

Query: 401 VIYEDLPSNLCAIRDYV------EKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASS 454
              +DLP  +               R+G  +      +   H    D LT          
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHVN-CDKLTT------IIE 360

Query: 455 SSDNEDLVDSETPNSFKQR-------P---RVPGLQTNIEVLKAELLEFISKHGQEGFMP 504
           SS     ++   P  +++        P    +P     + ++  ++++          M 
Sbjct: 361 SS-----LNVLEPAEYRKMFDRLSVFPPSAHIP-TIL-LSLIWFDVIK-------SDVMV 406

Query: 505 MRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYK---------HRK-------PKGY 548
           +  +L K     VEK            S+ ++ L  K         HR        PK +
Sbjct: 407 VVNKLHK--YSLVEK-----QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 549 ---------WDN---------LENLE--EEISRFQRSWGMDPSFMPSRKSFERAGRYDIA 588
                     D          L+N+E  E ++ F R   +D  F+  +K         I 
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFL-EQK---------IR 508

Query: 589 RALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDK 621
                W     +   L  +L+    + +I  + 
Sbjct: 509 HDSTAWNASGSILNTL-QQLK--FYKPYICDND 538

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 66/446 (14%), Positives = 130/446 (29%), Gaps = 139/446 (31%)

Query: 35  KCCTIFSPPPLVNKLTHSSRIYASIVNGNGNGDNGKNRKEDEDEQRKVHCEVEVVSWRER 94
            C +  +   ++ KL +  +I  +  + + +  N K R      + +          + +
Sbjct: 191 NCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------LKSK 241

Query: 95  RIKAEMLVNADVDSVWNALTDYERLADFVPNLACRSSTTT--------LSYEVNVIPRLN 146
             +  +LV   + +V NA    +    F  NL+C+   TT        LS        L+
Sbjct: 242 PYENCLLV---LLNVQNA----KAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 147 FP----------AIFLE--RIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELSLP 194
                       ++ L+       DLP   + L              P   +   E    
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTT-----------NPRRLSIIAES--- 336

Query: 195 ILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRPC 254
                 +       +  K  + +    I+ S+   + P+                  R  
Sbjct: 337 ------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----------------EYRKM 374

Query: 255 FVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS 314
           F     L  F     +   H      I     +S +W  +     +  +V  L    ++ 
Sbjct: 375 FDR---LSVFP---PS--AH------IPTIL-LSLIWFDVI-KSDVMVVVNKLHKYSLVE 418

Query: 315 RENNKVRI------LQEGCKGLLYMVLHARVV---------------------------- 340
           ++  +  I      L+   K      LH  +V                            
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 341 --MDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM 398
             +   E  E+   F  V  DF      +L +++  H +    +  S +  N+L      
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFR-----FLEQKI-RHDSTAWNASGSIL--NTLQQLKFY 530

Query: 399 EEVIYEDLPSN---LCAIRDYVEKRE 421
           +  I ++ P     + AI D++ K E
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIE 556

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Length = 155

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 336
           V  ++T+  P  +++ V      LP ++ +L   ++L  + ++  +           +  
Sbjct: 6   VRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPA------PLGT 59

Query: 337 ARVVMDICEQHE-QEISFEQVEGDFDSFQGKWLFEQL-GSHHTLLKYSVESKMQKNSL-- 392
                ++      + I++  + G      G+ LF    G+  T +   +  +    S   
Sbjct: 60  VSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGA 119

Query: 393 LSEAIMEEVIYEDLPSNLCAIRDYVE 418
           +   +  +   + L  +L   +   E
Sbjct: 120 VIARMFNQEPSQQLRDDLMRFKREQE 145

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 15/151 (9%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 336
           +  S+ V AP ++VW ++  +  +    P ++   +     +       G + +      
Sbjct: 4   LRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTP-----GAERVFGAGTE 58

Query: 337 ARVVMDICEQHEQE--ISFEQVEGDF--DSFQGKWLFEQLGSHHTLLKYS--VESKMQKN 390
             +V  + E+ E    + +   +  F   + +           H  + ++   +   +  
Sbjct: 59  EELVERLVERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSPETA 118

Query: 391 SLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 421
             L   I + V        L A+ +   + E
Sbjct: 119 RELESVIGDGVFA----VGLNALAERYGRLE 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	663
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.84
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.84
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.83
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.81
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.78
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.67
3qsz_A	189	STAR-related lipid transfer protein; structural ge	99.66
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.58
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.57
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.56
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.55
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.5
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.49
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	99.44
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.4
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	99.26
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	99.22
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.2
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.2
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.19
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	99.16
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.14
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.12
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	99.1
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	99.09
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.05
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.04
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	98.98
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	98.97
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	98.93
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	98.92
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	98.92
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	98.9
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	98.89
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.89
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	98.88
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	98.85
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.78
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.76
2leq_A	146	Uncharacterized protein; start domains, structural	98.75
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	98.74
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	98.68
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	98.68
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	98.67
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	98.67
2lcg_A	142	Uncharacterized protein; start domain, structural	98.66
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	98.66
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.63
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.61
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.59
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	98.58
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.57
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.56
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.53
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.51
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.49
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.47
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.45
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.42
3put_A	166	Hypothetical conserved protein; structural genomic	98.42
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	98.4
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.38
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.33
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	98.33
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	98.3
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	98.3
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.24
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.21
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.2
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.19
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	98.19
2le1_A	151	Uncharacterized protein; structural genomics, nort	98.16
2pcs_A	162	Conserved protein; structural genomics, unknown fu	98.15
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.12
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.11
1vjh_A	122	BET V I allergen family; structural genomics, cent	98.11
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	97.93
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	97.9
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	97.85
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	97.85
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	97.8
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	97.77
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	97.76
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	97.7
2luz_A	192	CALU16; structural genomics, northeast structural	97.69
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.64
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.62
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	97.56
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	97.46
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.44
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	97.26
2leq_A	146	Uncharacterized protein; start domains, structural	96.54
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	96.53
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	96.53
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	96.49
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	96.34
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	96.3
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	96.29
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	96.18
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	95.89
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	95.39
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	95.17
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	95.1
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	94.89
2lio_A	136	Uncharacterized protein; structural genomics, nort	94.08
2il5_A	171	Hypothetical protein; structural genomics, APC2365	93.77
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	93.44
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	92.87
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	92.81
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	92.74
1xn5_A	146	BH1534 unknown conserved protein; structural genom	92.65
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	92.05
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	91.96
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	91.84
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	91.81
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	91.43
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	91.06
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	90.73
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	90.5
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	90.46
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	89.99
2lcg_A	142	Uncharacterized protein; start domain, structural	89.96
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	89.83
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	89.55
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	89.2
2ldk_A	172	Uncharacterized protein; structural genomics, nort	88.89
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	88.29
2l9p_A	164	Uncharacterized protein; structural genomics, nort	88.18
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	87.7
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	87.15
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	86.95
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	86.36
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	86.35
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	86.24
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	86.01
2luz_A	192	CALU16; structural genomics, northeast structural	83.64
3put_A	166	Hypothetical conserved protein; structural genomic	82.65
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	82.1
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	81.55
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	81.42
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	81.27
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	80.72

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.84  E-value=4.4e-20  Score=169.59  Aligned_cols=139  Identities=15%  Similarity=0.241  Sum_probs=116.9

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC----CEEEEEE-EeccceeEEEEEEEEEEEEeeeCCC-
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN----NKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQ-  349 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g----n~vrv~q-~g~~gll~~~~~~rvVLDV~E~ppr-  349 (663)
                      .++.+++|+||+++||++++|+++||+|+|+|.+++++++.+    +...... .+..++ ...|++++++    .+++ 
T Consensus         3 ~~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~v~~----~~~~~   77 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFL-REKFATRVRR----DKDAR   77 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSS-CCEEEEEEEE----ETTTC
T ss_pred             EEEEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecce-eEEEEEEEEE----cCCCc
Confidence            478999999999999999999999999999999999998644    3333332 344443 2456666543    4666 


Q ss_pred             eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          350 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       350 rIsfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      +|.|++++|+|+.+.|.|+|++.++| |+|+|+++++++  ++++..+++.++...+..++++|++|+++.++
T Consensus        78 ~i~~~~~~G~f~~~~g~w~f~~~~~g-t~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~~  147 (148)
T 1t17_A           78 SIDVSLLYGPFKRLNNGWRFMPEGDA-TRVEFVIEFAFK--SALLDAMLAANVDRAAGKLIACFEARAQQLHG  147 (148)
T ss_dssp             EEEEEESSTTSSCEEEEEEEEEETTE-EEEEEEEEECCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCChhccEEEEEEEECCCC-eEEEEEEEEEEC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999876 999999999984  67888999999999999999999999998875

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.84  E-value=1.5e-19  Score=171.51  Aligned_cols=144  Identities=19%  Similarity=0.261  Sum_probs=117.0

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE-EeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q-~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      +++.+++|+||+++||++|+|+++||+|+|+|.+++++++.++..++.. .+..++. ..|+++++++   .++++|.|+
T Consensus         6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~~~~~~~~~~~G~~-~~~~s~~~~~---~~~~~i~~~   81 (172)
T 3tfz_A            6 HVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEI-NTWTSRRDLD---PARRVIAYR   81 (172)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEEEEE---TTTTEEEEE
T ss_pred             EEEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCEEEEEEEEecCCEE-EEEEEEEEEe---CCCCEEEEE
Confidence            6999999999999999999999999999999999999998877755433 3555542 5566654322   235789999


Q ss_pred             EE--ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCc-----------cchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          355 QV--EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-----------LLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       355 ~V--eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg-----------~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      ++  +|+|+.+.|.|+|++.++++|+|+|++++++..+.           +.+...+.+.+.+++..+|.+||+++|++.
T Consensus        82 ~~~~~gpf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~~  161 (172)
T 3tfz_A           82 QLETAPIVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERRV  161 (172)
T ss_dssp             EEECCTTEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCChhhcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99  58999999999999998779999999999975322           123346889999999999999999999876


Q ss_pred             CC
Q 006041          422 GD  423 (663)
Q Consensus       422 a~  423 (663)
                      ..
T Consensus       162 ~~  163 (172)
T 3tfz_A          162 RA  163 (172)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.83  E-value=1.6e-19  Score=171.55  Aligned_cols=143  Identities=22%  Similarity=0.416  Sum_probs=119.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE---EeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q---~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +++.+++|+||+++||++++|+++||+|+|+|.++++++++++..++..   ....+.. ..|+.+++++   .+.++|.
T Consensus         4 ~v~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~~~~rl~~~~~~~G~~-~~~ts~~~~d---~~~~~I~   79 (159)
T 3tl1_A            4 HTDNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKV-WSWVSERVAD---PVTRTVR   79 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSEEEEEEEECCCTTSCC-CEEEEEEEEE---TTTTEEE
T ss_pred             eeEEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCEEEEEEEEEeccCceE-EEEEEEEEEc---CCCCEEE
Confidence            4789999999999999999999999999999999999998877666543   3455543 4566654432   2456999


Q ss_pred             EEEE-ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          353 FEQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       353 fr~V-eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      |+++ +|+|+.+.|.|+|+++++ +|+|+|.++|++..+.+++...+.+.+..++...|.+||+++|+..+.
T Consensus        80 ~~~~~~gPf~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~~~~  150 (159)
T 3tl1_A           80 AQRVETGPFQYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAGE  150 (159)
T ss_dssp             EEESSCTTEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCChhhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            9987 799999999999999987 699999999998655667766788899999999999999999987654

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.81  E-value=6.8e-19  Score=168.91  Aligned_cols=143  Identities=21%  Similarity=0.358  Sum_probs=119.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE---eccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE---GCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~---g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +++.++.|+||+++||++|+|+++||+|+|+|.++++++++++.+++...   ...+.. ..|+.+.+++   .+.++|.
T Consensus         4 ~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-~~~ts~~~~d---~~~~~I~   79 (169)
T 3tvq_A            4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRV-WEWVSHRVPD---KGSRTVR   79 (169)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEETTEEEEEEEECCCTTSCC-CEEEEEEEEE---GGGTEEE
T ss_pred             eEEEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCCCEEEEEEEEEecCCCeE-EEEEEEEEEc---CCCcEEE
Confidence            48899999999999999999999999999999999999998886655432   444532 4566654432   3457999


Q ss_pred             EEEE-ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          353 FEQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       353 fr~V-eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      |+++ +|+|+.+.|.|+|++.++| |+|+|..+|++.++.+++..++.+.+..++...|.+||+++|+..+.
T Consensus        80 ~~~l~~gPf~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~  150 (169)
T 3tvq_A           80 AHRVETGPFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHRE  150 (169)
T ss_dssp             EEESSCTTEEEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCChhheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            9874 6899999999999999887 99999999998655678888899999999999999999999987665

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.78  E-value=9.6e-18  Score=148.19  Aligned_cols=137  Identities=19%  Similarity=0.266  Sum_probs=108.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEE-EEeccceeEEEEEEEEEEEEee-eCCCeEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICE-QHEQEISF  353 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~-q~g~~gll~~~~~~rvVLDV~E-~pprrIsf  353 (663)
                      .++.+++|+||+++||++|+|+++||+|+|+|.+++++...+++.... .....+. ...|..+    +.+ .++++|.|
T Consensus         3 ~~~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~----~~~~~~~~~i~~   77 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGK-KVRWLEE----EEWDDENLRNRF   77 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTE-EEEEEEE----EEEETTTTEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEEEEEeCCc-eEEEEEE----EEEcCCCcEEEE
Confidence            478899999999999999999999999999999999998765543322 2233332 2334443    333 46689999


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchH----HHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE----AIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~----~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      +..+|+++.+.|.|+|++.++| |+|+|++++++.  ++++.    .++...+++.+..+|++|++++|+.
T Consensus        78 ~~~~g~~~~~~~~~~~~~~~~g-T~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~  145 (147)
T 2d4r_A           78 FSPEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELT--IPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  145 (147)
T ss_dssp             EEEEESCSEEEEEEEEEECSSS-EEEEEEEEEECC--CTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeccCChhheEEEEEEEECCCC-cEEEEEEEEecC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999888999999999876 999999999975  33443    4455777799999999999999985

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.67  E-value=1.8e-15  Score=140.94  Aligned_cols=140  Identities=16%  Similarity=0.219  Sum_probs=101.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      ..++.+++|+||+++||++++|+++||+|+|+|.+++++..  +..+.......+...+.|..+++.   ..++++|.|+
T Consensus         4 ~~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~--~~~~~~~~~~~G~~~~~~~~~v~e---~~p~~~i~~~   78 (155)
T 3ggn_A            4 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDD--KRSRWTVEAPAPLGTVSWEAELTA---DEPGKRIAWR   78 (155)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSS--SEEEEEEECCTTTCEEEEEEEEEE---EETTTEEEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecC--CeeEEEEEecCCcceEEEEEEEEE---ecCCCEEEEE
Confidence            45899999999999999999999999999999999999853  333332222223122456555432   2478999999


Q ss_pred             EEecCCceeEEEEEEEEc-CCCeEEEEEEEEEEeccCcc---chHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          355 QVEGDFDSFQGKWLFEQL-GSHHTLLKYSVESKMQKNSL---LSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       355 ~VeGdFr~f~G~WtLepl-gdGgTrVtYtve~eP~~gg~---LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      .++|++..+.|.|+|++. ++++|+|+|.++++|+. ++   +...+++....+.+.+.|+.||+.+|..
T Consensus        79 ~~~g~~~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~-~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~  147 (155)
T 3ggn_A           79 SLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPG-GSAGAVIARMFNQEPSQQLRDDLMRFKREQELG  147 (155)
T ss_dssp             ECTTCSSCEEEEEEEEECSSSSCEEEEEEEEEC-----------------CHHHHHHHHHHHHHHHHHHT
T ss_pred             ECCCCCcceEEEEEEEECCCCCceEEEEEEEEECCC-cHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            999998889999999998 46689999999999852 22   2234456667888889999999999874

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=99.66  E-value=5e-15  Score=141.60  Aligned_cols=166  Identities=13%  Similarity=0.198  Sum_probs=123.7

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN  318 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn  318 (663)
                      .+|++.++.+|+       +||.+..+     +.+...++++.+|++|+++||+++.|++.||+|.|+|.++++++++++
T Consensus         3 ~~W~~~~~~~gv-------~v~~~~~~-----~~~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~~~   70 (189)
T 3qsz_A            3 DGWSLAKDAEGI-------KVYVRNVE-----GSPLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKATDT   70 (189)
T ss_dssp             CCCEEEEEETTE-------EEEEECCT-----TCSSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEECSS
T ss_pred             CCCEEEEcCCCE-------EEEEEeCC-----CCCeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeecCC
Confidence            489999999999       99999433     223556999999999999999999999999999999999999998666


Q ss_pred             EEEEEEEeccc--eeEEEEEEEEEEEEeeeCCCeEEEEEEec---------C--CceeEEEEEEEEcCCCeEEEEEEEEE
Q 006041          319 KVRILQEGCKG--LLYMVLHARVVMDICEQHEQEISFEQVEG---------D--FDSFQGKWLFEQLGSHHTLLKYSVES  385 (663)
Q Consensus       319 ~vrv~q~g~~g--ll~~~~~~rvVLDV~E~pprrIsfr~VeG---------d--Fr~f~G~WtLeplgdGgTrVtYtve~  385 (663)
                      ...+++.....  +...-|......  ....+..+.+.....         .  +..+.|.|.|+| ++++|+|+|...+
T Consensus        71 ~~i~y~~~~~p~p~~~RD~v~~~~~--~~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~  147 (189)
T 3qsz_A           71 EQYHYLDNSAPWPVSNRDGVYHFTY--EKAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHA  147 (189)
T ss_dssp             EEEEEEEECCSSSCCCEEEEEEEEE--EECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEE
T ss_pred             ceEEEEEeecCCCcCCcceEEEEEE--EECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEe
Confidence            55555432111  111111111111  112234444433322         1  346789999999 8889999999999


Q ss_pred             EeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          386 KMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       386 eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      +|+  +++|.++++.++.+.+..+|++||+++++..
T Consensus       148 dp~--G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~~  181 (189)
T 3qsz_A          148 SPG--GSIPSWLANQTVVETPFGTLKALRSHLRQAH  181 (189)
T ss_dssp             CSC--SSSCHHHHHHTTTHHHHHHHHHHHHHHTC--
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            995  7899999999999999999999999998754

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.58  E-value=4.7e-14  Score=132.78  Aligned_cols=140  Identities=15%  Similarity=0.220  Sum_probs=104.5

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCc----ccccCcCCcEEEEEeecCCEEEEEE--Eecccee-EEEEEEEEEEEEeee
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYET----LPEIVPNLAISKILSRENNKVRILQ--EGCKGLL-YMVLHARVVMDICEQ  346 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEn----yPeWiP~V~sSrVLer~gn~vrv~q--~g~~gll-~~~~~~rvVLDV~E~  346 (663)
                      ...++.+++|+||+++||++|+|+++    ||+|+|+      ...+++..+...  .+..+.. -..|++++++    .
T Consensus         6 ~i~v~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~----~   75 (161)
T 3p9v_A            6 SIELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLGNNAYRWEMEKVGVDKHAIQSVYACTYHA----D   75 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEETTEEEEEECCBSSGGGCBCCEEEEEEEE----E
T ss_pred             EEEEEEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcCCCceEEEEEEEeeeeEEEEEEEEEEEEE----c
Confidence            34688999999999999999999999    7777765      222334222221  1122111 1255665433    3


Q ss_pred             C-CCeEEEEEEecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          347 H-EQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       347 p-prrIsfr~VeGdF-r~f~G~WtLeplgdGgTrVtYtve~eP~~g-g~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      + +++|.|++++|+| +.+.|.|+|++.++|+|+|+|.++++++.+ ..+...++..++.+.+..+++++.+||++.|-+
T Consensus        76 ~~~~~I~~~~~~g~~~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~~~  155 (161)
T 3p9v_A           76 KEAGKITWSPIKGEGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKKAFLE  155 (161)
T ss_dssp             TTTTEEEEEECTTSTTEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCCEEEEEEecCccceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5 7899999999999 899999999999988899999999998511 224466789999999999999999999988765

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.57  E-value=3.9e-14  Score=130.32  Aligned_cols=138  Identities=11%  Similarity=0.160  Sum_probs=103.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC---EEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn---~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +++.+++|+||+++||++|+|+++||+|+|.+.+++++...++   .++.. ....+.   .+..+  +...+.+++++.
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~-~~~~G~---~~~e~--i~~~d~~~~~~~   76 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVF-GAGTEE---ELVER--LVERDESARRLV   76 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEE-SSSSSS---CEEEE--EEEEETTTTEEE
T ss_pred             eEEEEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEE-EeCCCC---EEEEE--EEEEeCCCCEEE
Confidence            4889999999999999999999999999999999999875422   23322 122221   11222  112223468999


Q ss_pred             EEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEe-ccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          353 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKM-QKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       353 fr~VeGd--Fr~f~G~WtLeplgdGgTrVtYtve~eP-~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      |+.++|+  +..+.+.|+|++.++++|+|+|+.+|+| +  .+++...+. +++..+...|++|++.+|++..
T Consensus        77 ~~~~~g~~~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p--~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~~~  146 (151)
T 2le1_A           77 YTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSP--ETARELESV-IGDGVFAVGLNALAERYGRLEH  146 (151)
T ss_dssp             EEEEECSSSEEEEEEEEEEEESSSSCEEEEEEEEEEECH--HHHHHHHHH-TTTTHHHHHHHHHHHHTTTTSC
T ss_pred             EEEecCCCCceeEEEEEEEEECCCCcEEEEEEEEEEecC--CCCCHHHHH-HHHHHHHHHHHHHHHHhhcccc
Confidence            9999975  5678999999997667899999999987 2  234455666 7888999999999999887643

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.56  E-value=1.5e-13  Score=127.14  Aligned_cols=145  Identities=13%  Similarity=0.143  Sum_probs=102.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ++++.++.|+||+++||++|+|+++|++|+|.|.+++++.  ++....... ...+ ....|..++++. ...+++++.|
T Consensus         3 m~i~~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~   78 (162)
T 2pcs_A            3 LNGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIG--EDKYKADLQIGIAA-VKGKYDAIIEVT-DIKPPYHYKL   78 (162)
T ss_dssp             CEEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEE--TTEEEEEEEECCGG-GCEEEEEEEEEE-EEETTTEEEE
T ss_pred             EEEeeEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeC--CCeEEEEEEEEeee-EEEEEEEEEEEE-ecCCCcEEEE
Confidence            4588999999999999999999999999999998888764  344333222 2222 223444443321 1246688877


Q ss_pred             EEEe---cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          354 EQVE---GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       354 r~Ve---GdFr~f~G~WtLeplgdGgTrVtYtve~eP~~g-g~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      ....   +.+..+.+.|+|++.++++|+|+|+.++++.+. ..++..++....++.+...+++|++++|+...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~~~  152 (162)
T 2pcs_A           79 LVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSKQE  152 (162)
T ss_dssp             EEEEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEecCCCccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            6542   233467999999997667899999999887421 123566788888889999999999999986555

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.55  E-value=1.7e-13  Score=127.88  Aligned_cols=135  Identities=16%  Similarity=0.300  Sum_probs=103.8

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .+..+++|+|||++||++|+|+++||+|+|.+.++++++.  +.++.... ..+.   .+..+  ++..+..++.++|+.
T Consensus         3 ~v~~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~G--G~vR~~~~-~~G~---~~~Er--l~~~D~~~~~~~y~i   74 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG--GRVRHLAN-PDGE---TIIER--LEVFNDKERYYTYSI   74 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGG--GTEEEEEC-TTSC---EEEEE--EEEEETTTTEEEEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeCC--CeEEEEEe-CCCC---EEEEE--EEEEeCCCCEEEEEE
Confidence            4889999999999999999999999999999999998853  44443221 1232   12232  222333468999999


Q ss_pred             EecC--CceeEEEEEEEE-cCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          356 VEGD--FDSFQGKWLFEQ-LGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       356 VeGd--Fr~f~G~WtLep-lgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      ++|+  ++.+.+.|+|.| .++++|+|+|+..++|.  + +....+..++...+...|++|++++|...
T Consensus        75 v~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~--g-~~~~~~~~~~~~~~~~~L~~Lk~~~e~~~  140 (146)
T 3f08_A           75 MNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV--A-VSDEEAINLVHGIYSDGLKALQHAFLDLE  140 (146)
T ss_dssp             EECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEES--S-SCHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             ecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEeC--C-CCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9986  468999999999 56778999999999983  3 44556788888999999999999988653

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.50  E-value=1.3e-12  Score=119.15  Aligned_cols=138  Identities=11%  Similarity=0.179  Sum_probs=98.8

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEee-eCCCeE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICE-QHEQEI  351 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E-~pprrI  351 (663)
                      .++++.++.|+||+++||++++|+++|++|+|+|.+++ +  .++....... .... ....+..+++  +.+ .++++|
T Consensus        12 ~m~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~--~~~~~~~~~~~~~g~-~~~~~~~~~~--~~~~~~~~~i   85 (157)
T 2ns9_A           12 KVRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-V--EDGSFTIELRLSLGP-LRGDARVRAS--FEDLEKPSKA   85 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-E--ETTEEEEEEEEESSS-SEEEEEEEEE--EEEEETTTEE
T ss_pred             EEEEeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-E--CCCEEEEEEEEEEcc-eeEEEEEEEE--EEecCCCcEE
Confidence            44799999999999999999999999999999998777 3  4454433322 2222 1233444433  222 367888


Q ss_pred             EEEEE-ec---CCceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          352 SFEQV-EG---DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       352 sfr~V-eG---dFr~f~G~WtLeplgdGgTrVtYtve~eP~~g-g~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .|... .|   ++ .+.+.|+|++.+ ++|+|+|+.++++.+. ..+...++...+++.+...+++|++++|+
T Consensus        86 ~~~~~~~~~~~~~-~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~  156 (157)
T 2ns9_A           86 TVKGSGRGAGSTL-DFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  156 (157)
T ss_dssp             EEEEEEECSSEEE-EEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEecCCCccE-EEEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88643 33   34 368999999987 6899999998886411 12445678888888999999999998874

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.49  E-value=5.7e-13  Score=125.85  Aligned_cols=138  Identities=14%  Similarity=0.124  Sum_probs=99.6

Q ss_pred             cCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee--cCCEEEEEEEeccceeEEEEEEEEEEEEee-e
Q 006041          270 NGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR--ENNKVRILQEGCKGLLYMVLHARVVMDICE-Q  346 (663)
Q Consensus       270 ~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer--~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~  346 (663)
                      |+.+.++++.+|.|+|||++||++|+|+++||+|.|.|..+++...  .|...++...+  +. .+.+  +    +++ .
T Consensus        13 ~g~~~~~i~~si~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~~G~~~~G~~~~~~~~~--~~-~~~~--~----v~~~~   83 (155)
T 3ijt_A           13 MGRGSMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMED--MP-ELAF--T----LVEVR   83 (155)
T ss_dssp             --CCCEEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETT--SC-CEEE--E----ECCCB
T ss_pred             cCCCcEEEEEEEEEcCCHHHHHHHHhCcccccccchhhEeeeccCCCCCCCEEEEEeCC--CC-cEEE--E----EEEEe
Confidence            6667889999999999999999999999999999999988875321  23443333222  21 1222  1    222 4


Q ss_pred             CCCeEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH-HHHHHHhhHHHHHHHHHHHHHh
Q 006041          347 HEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI-MEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       347 pprrIsfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L-~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +++++.|+..- ++..+.+.|+|++.++++|+|+++.+++..  .+.|..+ +.+.+.++++..|.+||+++|+
T Consensus        84 p~~~~~~~~~~-p~~~~~~~h~l~p~~~ggTrvt~~~~~~G~--~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~  154 (155)
T 3ijt_A           84 ENQCFSDLTAT-PFGNVLFEHEILENPDGTISLRHSVSLTDS--DTTEEALAFLKQIFADVPESVGKLKQILET  154 (155)
T ss_dssp             TTTEEEEEEEE-TTEEEEEEEEEEECTTSCEEEEEEEEESCC--SCCHHHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             CCcEEEEEEec-CCeEEEEEEEEEEcCCCcEEEEEEEEEECC--CcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67899997543 345778999999987789999999998621  2112222 5578999999999999999986

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=99.44  E-value=6e-12  Score=122.04  Aligned_cols=168  Identities=5%  Similarity=-0.075  Sum_probs=121.7

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN  317 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~-APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g  317 (663)
                      ++|++.++.+|+       +||.+...     +.+...++++.+|+ +|+++|+++|.|.+.+++|.+.|.++++++.++
T Consensus        28 ~~W~~~~~~~~v-------~v~~~~~~-----~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~   95 (214)
T 1ln1_A           28 ADWQLLVETSGI-------SIYRLLDK-----KTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG   95 (214)
T ss_dssp             TTCEEEEEETTE-------EEEEEEET-----TTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT
T ss_pred             CCcEEEEECCCe-------EEEEeccC-----CCCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCC
Confidence            489999999999       99999543     23466799999995 999999999999999999999999999998755


Q ss_pred             CEEEEEEE-ecc-ceeEEEEEEEEEEEEeeeCCCe---EEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEEE
Q 006041          318 NKVRILQE-GCK-GLLYMVLHARVVMDICEQHEQE---ISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYS  382 (663)
Q Consensus       318 n~vrv~q~-g~~-gll~~~~~~rvVLDV~E~pprr---Isfr~Ve--------GdFr--~f~G~WtLeplgdGgTrVtYt  382 (663)
                       ...+++. ... .+..--|.........+.....   +....++        |.++  .+.|.|.|++.++++|+|+|.
T Consensus        96 -~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~  174 (214)
T 1ln1_A           96 -ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMY  174 (214)
T ss_dssp             -EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEE
T ss_pred             -CEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEE
Confidence             3333332 211 1110011111111111112222   2233332        3333  578999999998889999999


Q ss_pred             EEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          383 VESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       383 ve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      .+++|+  +++|.++++.++.+.+...|++|++++++..
T Consensus       175 ~~~Dp~--G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y~  211 (214)
T 1ln1_A          175 YFDNPG--GQIPSWLINWAAKNGVPNFLKDMARACQNYL  211 (214)
T ss_dssp             EEECCS--SCCCHHHHHHHHHTHHHHHHHHHHHHHHTC-
T ss_pred             EEECCC--CcccHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence            999995  7899999999999999999999999998653

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.40  E-value=9e-12  Score=118.44  Aligned_cols=131  Identities=20%  Similarity=0.253  Sum_probs=103.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEE-EEEeecC----CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAIS-KILSREN----NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sS-rVLer~g----n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      .+..+++|+|||++||+++.|+++| .|+|.+.+| ++++.++    +.++..  +  +.  +  ..+  ++..+..++.
T Consensus         3 ~v~~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~--g--g~--v--~Er--l~~~D~~~~~   71 (160)
T 3p51_A            3 KVYNSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL--N--GE--F--LDT--LIAYSEIERR   71 (160)
T ss_dssp             EEEEEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE--T--TT--E--EEE--EEEEETTTTE
T ss_pred             EEEEEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE--C--CE--E--EEE--EEEEcCCCcE
Confidence            4889999999999999999999999 999999988 8886543    234443  3  32  1  222  2333345689


Q ss_pred             EEEEEEecCC-------ceeEEEEEEEEcC-CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          351 ISFEQVEGDF-------DSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       351 Isfr~VeGdF-------r~f~G~WtLeplg-dGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      ++|++++|++       +.+.++|+|.|.+ +++|.|+|+..|++..      .++..++...+...|++|++++|+...
T Consensus        72 ~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~------~~~~~~~~~~~~~~L~~Lk~~~e~~~~  145 (160)
T 3p51_A           72 IMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS------TEAVEYMNTVYRSLLADLAAEFTSESR  145 (160)
T ss_dssp             EEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC------SHHHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred             EEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH------HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999975       4799999999986 6799999999999841      266778888999999999999997654


Q ss_pred             C
Q 006041          423 D  423 (663)
Q Consensus       423 ~  423 (663)
                      .
T Consensus       146 ~  146 (160)
T 3p51_A          146 R  146 (160)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=99.26  E-value=1.5e-10  Score=113.86  Aligned_cols=162  Identities=13%  Similarity=0.140  Sum_probs=115.7

Q ss_pred             CCceeec-ccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHH-hccCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFG-QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVM-TAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~-~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVL-TDyEnyPeWiP~V~sSrVLer~  316 (663)
                      ++|++.+ +.+|+       +||.+..++    .|  +.++++.+|++|+++|+++| .|.+..++|.++|.++++++.-
T Consensus        31 ~gW~~~~~~~~gv-------~vy~~~~~~----~g--~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~   97 (221)
T 3p0l_A           31 EGWKKESQQDNGD-------KVMSKVVPD----VG--KVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKI   97 (221)
T ss_dssp             TTCEEEEECTTSC-------EEEEEECSS----SC--EEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEEC
T ss_pred             CCCeEeeecCCCc-------EEEEEEcCC----Cc--eEEEEEEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEec
Confidence            5899996 88999       999996332    22  56788888999999999998 7999999999999999999874


Q ss_pred             CC-EEEEEEE-ecc---ceeEEEEEEEEEEEEee-eCCCeEEE-EEEe--------cCCc--eeEEEEEEEEcCCC--eE
Q 006041          317 NN-KVRILQE-GCK---GLLYMVLHARVVMDICE-QHEQEISF-EQVE--------GDFD--SFQGKWLFEQLGSH--HT  377 (663)
Q Consensus       317 gn-~vrv~q~-g~~---gll~~~~~~rvVLDV~E-~pprrIsf-r~Ve--------GdFr--~f~G~WtLeplgdG--gT  377 (663)
                      ++ ...+++. ...   .+...-|..   ++... .....+.. ..++        |.++  .+.+.|.++|.+++  +|
T Consensus        98 ~~~t~I~y~~~~~~~~~~v~~RDfv~---~r~~~~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t  174 (221)
T 3p0l_A           98 GKDTFITHELAAEAAGNLVGPRDFVS---VRCAKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKT  174 (221)
T ss_dssp             SSSEEEEEEEECC---CCSCCEEEEE---EEEEEECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEeeccccCCccCCceEEE---EEEEEEcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcE
Confidence            43 3333332 110   110011111   11111 11222211 2222        3343  45688999999876  89


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      +|+|..+++|+  |++|.++++.++...+...+++||++++
T Consensus       175 ~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          175 KLTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRKRLE  213 (221)
T ss_dssp             EEEEEECEECC--SSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEEecCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999995  7899999999999999999999999987

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=99.22  E-value=1.8e-10  Score=115.51  Aligned_cols=175  Identities=14%  Similarity=0.220  Sum_probs=115.8

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCee-EEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVH-RCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSR  315 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~-r~VrasIvI~-APpeqVWaVLTDyEnyPeWiP~V~sSrVLer  315 (663)
                      +.+|++..+.+|+       +||.+...    .+|.. ..+++..+|. +++++|++++.|++.+++|.+.+.++++++.
T Consensus        46 ~~~W~~~~~~~gv-------~vy~~~~~----~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~  114 (255)
T 2e3n_A           46 DANWQLVVEEGEM-------KVYRREVE----ENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVET  114 (255)
T ss_dssp             CTTEEEEEEETTE-------EEEEECCE----ETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEE
T ss_pred             CCCcEEEEeCCCE-------EEEEEEcC----CCCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhhcceeEEEEE
Confidence            4589999999999       99999532    13332 1466666665 9999999999999999999999999999988


Q ss_pred             -cCCEEEEEEE-ec-cce-----eEEEEE------------EEEEEEEeeeCC------CeEEEEE----EecCCc-eeE
Q 006041          316 -ENNKVRILQE-GC-KGL-----LYMVLH------------ARVVMDICEQHE------QEISFEQ----VEGDFD-SFQ  364 (663)
Q Consensus       316 -~gn~vrv~q~-g~-~gl-----l~~~~~------------~rvVLDV~E~pp------rrIsfr~----VeGdFr-~f~  364 (663)
                       +++...+++. .. ..+     ++.+..            ..+++......+      ..+++..    ..|.+- ...
T Consensus       115 i~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~  194 (255)
T 2e3n_A          115 LADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPE  194 (255)
T ss_dssp             EETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---
T ss_pred             cCCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCC
Confidence             5665444432 11 111     111100            000110000000      1122221    111110 112


Q ss_pred             EEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCCc
Q 006041          365 GKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSL  426 (663)
Q Consensus       365 G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~~  426 (663)
                      |.|.|++ ++++|+|+|...++|+  |++|.++++.++...++..|+.|++++++...++.+
T Consensus       195 g~~~l~~-~~~~t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~l~~L~k~v~~~~~~~~~  253 (255)
T 2e3n_A          195 GNQEISR-DNILCKITYVANVNPG--GWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPI  253 (255)
T ss_dssp             CCCCCCG-GGEEEEEEEEEEEECS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CCccccc-CCCcEEEEEEEEeCCC--CccCHHHHHHHHhccccHHHHHHHHHHHHhccCCCc
Confidence            6677766 4568999999999995  789999999999999999999999999988877553

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.20  E-value=9.2e-10  Score=104.09  Aligned_cols=143  Identities=9%  Similarity=0.098  Sum_probs=104.2

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHh-ccCc-ccccCcCCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          274 HRCVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLT-DyEn-yPeWiP~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ...+..++.|+||+++||+++. |+.+ +|+|+|.++++++++.++  +.++.+.-. .+...-.+..+  ++..+...+
T Consensus         3 ~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~-~g~~~~~~kEr--l~~~D~~~~   79 (158)
T 2qim_A            3 VFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFI-EGGESKYVLHK--IEAIDEANL   79 (158)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEE-ETTEEEEEEEE--EEEEEGGGT
T ss_pred             CEEEEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEc-CCCcceeEEEE--EEEEecCCC
Confidence            3468899999999999999999 9996 599999999999998754  234433222 22211112222  333445779


Q ss_pred             eEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          350 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       350 rIsfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      .++|+.++|+     ++.+.++|+|.|.++++|.+++++++++..+...++..+. ...+.+..++++|.+.+-+.
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~  154 (158)
T 2qim_A           80 GYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGK-AAKARGDAFFKAIESYLSAH  154 (158)
T ss_dssp             EEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence            9999999997     5588999999998777899999999998754434433332 45677888888888887553

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.20  E-value=2e-09  Score=101.72  Aligned_cols=141  Identities=11%  Similarity=0.147  Sum_probs=103.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHh-ccCc-ccccCcCCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          276 CVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLT-DyEn-yPeWiP~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      .+..++.|+||+++||+++. |+.+ +|+|+|.++++++++.++  +.++.+.-. .+...-.+..+  ++..++..+.+
T Consensus         4 ~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~-~G~~~~~~kEr--l~~~D~~~~~~   80 (157)
T 1tw0_A            4 VFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITAN-EGDKTSFVLQK--VDAIDEANLGY   80 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEE-ETTEEEEEEEE--EEEEETTTTEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEee-CCCccceEEEE--EEEEeccCCEE
Confidence            57889999999999999999 9985 699999999999998754  234433222 23211112222  34444567999


Q ss_pred             EEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          352 SFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       352 sfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      +|+.++|+     ++.+.++|+|.|.++++|.++++.++++..+...++..+. ...+.+..++++|.+.+-+.
T Consensus        81 ~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~  153 (157)
T 1tw0_A           81 DYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRD-DALAKGAGFFKAIEGYVLAN  153 (157)
T ss_dssp             EEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence            99999997     5688999999998777899999999998754434433332 45677888889888887553

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.19  E-value=6.4e-10  Score=105.25  Aligned_cols=142  Identities=16%  Similarity=0.275  Sum_probs=103.6

Q ss_pred             EEEEEEEEEcCCHHHHHHHHh-ccCc-ccccCc-CCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          275 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVP-NLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLT-DyEn-yPeWiP-~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ..+..++.|+||+++||+++. |+.+ +|.|+| .++++++++.++  +.++.+.-. .+...-.+..+  ++..++..+
T Consensus         3 ~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~-~G~~~~~~kEr--l~~~D~~~~   79 (159)
T 1e09_A            3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG-EGSQYGYVKHK--IDSIDKENY   79 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEEC-CSSSCEEEEEE--EEEEETTTT
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEec-CCCCceEEEEE--EEEEcCCCC
Confidence            358889999999999999999 9985 799999 678999998754  234443322 23110112222  344445779


Q ss_pred             eEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          350 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       350 rIsfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      .+.|+.++|+     ++.+.+.|+|.+.++++|.+++++++++..+..+++.-++ ...+.+..++++|.+.+-+.
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~  154 (159)
T 1e09_A           80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVK-AGKEKASNLFKLIETYLKGH  154 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence            9999999997     4688999999998777899999999998754444443333 55777888899998887653

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=99.16  E-value=9.5e-10  Score=108.58  Aligned_cols=166  Identities=11%  Similarity=0.044  Sum_probs=116.2

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeec-
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-  316 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~-  316 (663)
                      .++|++.++.+||       +||.+..++     ...+.++++.+|++|+++|+++|.|.+..++|.+++.++++++.- 
T Consensus        42 ~~~W~~~~~~~gv-------~vy~~~~~~-----~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id  109 (224)
T 1jss_A           42 EDEWRVAKKAKDV-------TVWRKPSEE-----FNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFE  109 (224)
T ss_dssp             GGGCEEEEEETTE-------EEEEEECSS-----SSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECS
T ss_pred             CCCCEEEEECCCE-------EEEEEeccC-----CCceEEEEEEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcC
Confidence            4589999999999       999994332     123457888899999999999999999999999999999999873 


Q ss_pred             CCEEEEEEEecc--c--eeEEEEEEEEEEEEeeeCCCe-EEEEEEe------cCCc--eeEEEEEEEEcCCC--eEEEEE
Q 006041          317 NNKVRILQEGCK--G--LLYMVLHARVVMDICEQHEQE-ISFEQVE------GDFD--SFQGKWLFEQLGSH--HTLLKY  381 (663)
Q Consensus       317 gn~vrv~q~g~~--g--ll~~~~~~rvVLDV~E~pprr-Isfr~Ve------GdFr--~f~G~WtLeplgdG--gTrVtY  381 (663)
                      ++...+++....  +  +...-|......  ....+.. +....++      |.++  ...|.|.++|.+++  .|+|+|
T Consensus       110 ~~~~I~y~~~~~~~~~~v~~RDfv~~r~~--~~~~~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~  187 (224)
T 1jss_A          110 ENCCVMRYTTAGQLLNIISPREFVDFSYT--VGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTG  187 (224)
T ss_dssp             TTEEEEEEEECCBTTTTBCCEEEEEEEEE--EEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEEEcccccCCCCCCCeEEEEEEE--EEcCCeEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEE
Confidence            444334433111  1  111111111000  0112222 1112222      3344  45688999998653  799999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .++++|+  |++|.++++.++...+...+++||+++++
T Consensus       188 ~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~  223 (224)
T 1jss_A          188 YIQTDLR--GMIPQSAVDTAMASTLANFYSDLRKGLRK  223 (224)
T ss_dssp             EECEECC--SCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEeCCC--CCccHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            9999995  78999999999999999999999998754

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.14  E-value=4e-09  Score=103.06  Aligned_cols=143  Identities=15%  Similarity=0.221  Sum_probs=103.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC---EEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn---~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      -......+|+||+++||+++.||.+++.|.|.++++ +++..++   .+|..... .+.-.-....+  |+..+...+.+
T Consensus        27 ~~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~-~G~p~~~vkEr--L~~~D~~~~~~  102 (183)
T 3rt2_A           27 CSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLK-SGLPATKSTEV--LEILDDNEHIL  102 (183)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEEC-CSSTTCEEEEE--EEEEETTTTEE
T ss_pred             eEEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeC-CCCccceEEEE--EEEEECCCCEE
Confidence            345666799999999999999999999999999999 6654222   34433222 22100011222  33444456899


Q ss_pred             EEEEEecC--CceeEEEEEEEEcC-CC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          352 SFEQVEGD--FDSFQGKWLFEQLG-SH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       352 sfr~VeGd--Fr~f~G~WtLeplg-dG--gTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      +|+.++|+  ++.+.+..+|.|.+ +|  +|.|+|+..|+|.. + ....-+..++..-+...|++|++.+|+....
T Consensus       103 sY~Iieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~-g-~~~e~~~~~~~~i~~~~L~~L~~~~e~~~~~  177 (183)
T 3rt2_A          103 GIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPE-G-NTKEETCFFVEALIQCNLNSLADVTERLQAE  177 (183)
T ss_dssp             EEEEEEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999986  56899999999986 55  69999999999743 2 2234567778888889999999999988654

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.12  E-value=1.7e-09  Score=101.96  Aligned_cols=140  Identities=10%  Similarity=0.136  Sum_probs=102.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHh-ccCc-ccccCcCCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          276 CVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLT-DyEn-yPeWiP~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      .+..++.|+||+++||+++. |+.+ +|+|+|.++++++++.++  +.++.+.-. .+...-.+..+  ++..+...+.+
T Consensus         4 ~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~-~G~~~~~~kEr--l~~~D~~~~~~   80 (155)
T 1icx_A            4 AFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAI-HDGHTSFVLHK--LDAIDEANLTY   80 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEE-SSSSEEEEEEE--EEEEEGGGTEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCCCCeEEEEEEe-cCCcceeEEEE--EEEEeccCCEE
Confidence            57889999999999999999 9985 699999999999998754  234433222 23211112233  34444567999


Q ss_pred             EEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          352 SFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       352 sfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      +|+.++|+     ++.+.++|+|.|.++++|.++++.++++..+. +++ ..-+...+.+..++++|.+.+-+.
T Consensus        81 ~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~-~~~~~~~~~~~~~~k~ie~yll~~  152 (155)
T 1icx_A           81 NYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSE-TVRDQAKFKGLGLFKAIEGYVLAH  152 (155)
T ss_dssp             EEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCH-HHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999997     56889999999987667999999999997544 433 322244567888888888877553

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=99.10  E-value=8.1e-09  Score=101.80  Aligned_cols=166  Identities=11%  Similarity=0.063  Sum_probs=117.5

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHH--hccCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVM--TAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVL--TDyEnyPeWiP~V~sSrVLer~  316 (663)
                      ++|+..++.+|+       +||.+..++     .....++++.+|++++++|+++|  .|.+..++|.+.+.++++++.-
T Consensus        43 ~~W~~~~~~~gv-------~v~~~~~~~-----~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i  110 (231)
T 2r55_A           43 AGWKICREGNGV-------SVSWRPSVE-----FPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSI  110 (231)
T ss_dssp             SSCEEEECCSSE-------EEEEEECSS-----SSSEEEEEEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEEC
T ss_pred             CCCEEEEeCCCE-------EEEEEccCC-----CCCcEEEEEEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEc
Confidence            489999999999       999996432     12456788889999999999999  9999999999999999999874


Q ss_pred             CC-EEEEEEEecc----ceeEEEEEEEEEEEEeee-CCCe--EEEEEEe--------cCCc--eeEEEEEEEEcC--CCe
Q 006041          317 NN-KVRILQEGCK----GLLYMVLHARVVMDICEQ-HEQE--ISFEQVE--------GDFD--SFQGKWLFEQLG--SHH  376 (663)
Q Consensus       317 gn-~vrv~q~g~~----gll~~~~~~rvVLDV~E~-pprr--Isfr~Ve--------GdFr--~f~G~WtLeplg--dGg  376 (663)
                      ++ ...+++....    .+...-|.   +++.... .+..  +....++        |.++  .+.+.|.++|.+  ++.
T Consensus       111 ~~~~~i~~~~~~~~~~~~v~~RDfv---~~r~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~  187 (231)
T 2r55_A          111 TDTLCVSRTSTPSAAMKLISPRDFV---DLVLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTK  187 (231)
T ss_dssp             SSSEEEEEEECCCBTTTTBCCEEEE---EEEEEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCC
T ss_pred             CCCEEEEEEEeccccCCccCCCeEE---EEEEEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCc
Confidence            43 3333433211    11111111   1111111 2222  2334443        2233  346789999975  568


Q ss_pred             EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          377 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       377 TrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      |+|+|...++|+  |++|.++++.++...+...+++|+++++++.
T Consensus       188 t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~~~  230 (231)
T 2r55_A          188 TNLVTFFHTDLS--GYLPQNVVDSFFPRSMTRFYANLQKAVKQFH  230 (231)
T ss_dssp             EEEEEEECEECC--SSCCHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEEEEEEEeCCC--CCccHHHHHHHHhHhHHHHHHHHHHHHHHhc
Confidence            999999999995  7899999999999999999999999998864

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=99.09  E-value=3e-09  Score=104.94  Aligned_cols=165  Identities=10%  Similarity=0.077  Sum_probs=116.1

Q ss_pred             CCceeeccc-ccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEeec
Q 006041          239 SKWGVFGQV-CRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       239 ~~W~~~~~~-~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVW-aVLTDyEnyPeWiP~V~sSrVLer~  316 (663)
                      ++|++.+.. +|+       .||.+..++    .|.  .+++..+|++|+++|+ +++.|.+..++|.+.|.++++++.-
T Consensus        42 ~~W~~~~~~~~g~-------~vy~~~~~~----~g~--~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~  108 (229)
T 1em2_A           42 ENWKFEKNNEYGD-------TVYTIEVPF----HGK--TFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRV  108 (229)
T ss_dssp             GGCEEEEECTTCC-------EEEEEEETT----TEE--EEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEE
T ss_pred             CCCEEEEecCCCC-------EEEEEecCC----CCc--eEEEEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEec
Confidence            489999987 799       999995431    232  3567778899999999 9999999999999999999999874


Q ss_pred             -CCEEEEEEEecc---c-eeEEEEEEEEEEEEeeeCCCe--EEEEEEe--------cCCc--eeEEEEEEEEcC--CCeE
Q 006041          317 -NNKVRILQEGCK---G-LLYMVLHARVVMDICEQHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLG--SHHT  377 (663)
Q Consensus       317 -gn~vrv~q~g~~---g-ll~~~~~~rvVLDV~E~pprr--Isfr~Ve--------GdFr--~f~G~WtLeplg--dGgT  377 (663)
                       ++...+++....   . +...-|..   ++.....+..  +....++        |.++  .+.+.|.++|.+  ++.|
T Consensus       109 ~~~t~I~~~~~~p~~~~~~~~RDfv~---~r~~~~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t  185 (229)
T 1em2_A          109 EDNTLISYDVSAGAAGGVVSPRDFVN---VRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVC  185 (229)
T ss_dssp             TTTEEEEEEEECCBTTTTBCCEEEEE---EEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCE
T ss_pred             CCCeEEEEEEecCcCCCCcCCCeeEE---EEEEEEcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcE
Confidence             343334443211   1 11111111   1111111222  2222332        3333  346789999975  4679


Q ss_pred             EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      +|+|..+++|+  |++|.++++.++...+...+++||+++++..
T Consensus       186 ~vt~~~~~Dp~--G~iP~~l~n~~~~~~~~~~~~~Lr~~~~~~~  227 (229)
T 1em2_A          186 TFVWILNTDLK--GRLPRYLIHQSLAATMFEFAFHLRQRISELG  227 (229)
T ss_dssp             EEEEEECEECC--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999995  7899999999999999999999999998764

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.05  E-value=4.7e-09  Score=104.32  Aligned_cols=148  Identities=12%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             cCCeeEEEEEEE--EEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEee
Q 006041          270 NGGVHRCVVASI--TVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICE  345 (663)
Q Consensus       270 ~~g~~r~VrasI--vI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E  345 (663)
                      |+....++..++  .|+||+++||+++.||.+++.|.|.+++|++ +.++  +.+|..... .+.-.-....  .|+..+
T Consensus        45 h~p~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eGdg~vGsVR~vt~~-~G~p~~~vkE--rL~~lD  120 (205)
T 3oqu_A           45 HLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGDPEIGSLREVNVK-SGLPATTSTE--RLELLD  120 (205)
T ss_dssp             CCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CSSCCTTCEEEEEEC-TTSSCSEEEE--EEEEEE
T ss_pred             cCCCCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEe-eCCCCCCcEEEEEEc-CCCccceEEE--EEEEEE
Confidence            555556788899  9999999999999999999999999999975 4332  234433221 2210001122  234444


Q ss_pred             eCCCeEEEEEEecC--CceeEEEEEEEEcC-CC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          346 QHEQEISFEQVEGD--FDSFQGKWLFEQLG-SH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       346 ~pprrIsfr~VeGd--Fr~f~G~WtLeplg-dG--gTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      ...+.++|+.++|+  ++.|.++++|.|.+ +|  +|.+.+...++|.. + ...--+..++..-+...|++|++.+|+.
T Consensus       121 de~~~~sYsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~-g-~t~e~~~~~v~~v~~~gL~~L~~~~e~~  198 (205)
T 3oqu_A          121 DEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQ-G-NTKDETCYFVEALIRCNLKSLADVSERL  198 (205)
T ss_dssp             TTTTEEEEEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55689999999996  55899999999987 34  68888888888642 2 3334567778888889999999999987


Q ss_pred             hCC
Q 006041          421 EGD  423 (663)
Q Consensus       421 ~a~  423 (663)
                      ...
T Consensus       199 ~~~  201 (205)
T 3oqu_A          199 ASQ  201 (205)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            654

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.04  E-value=2.9e-09  Score=101.71  Aligned_cols=143  Identities=13%  Similarity=0.191  Sum_probs=98.8

Q ss_pred             ccCCeeEEEEEEEEEcCCHHHHHHH-HhccCcccccCc-CCcEEEEEeec-CC--EEEEEEEeccceeEEEEEEEEEEEE
Q 006041          269 ENGGVHRCVVASITVKAPVSEVWNV-MTAYETLPEIVP-NLAISKILSRE-NN--KVRILQEGCKGLLYMVLHARVVMDI  343 (663)
Q Consensus       269 e~~g~~r~VrasIvI~APpeqVWaV-LTDyEnyPeWiP-~V~sSrVLer~-gn--~vrv~q~g~~gll~~~~~~rvVLDV  343 (663)
                      ++....-.+..++.|+||+++||++ +.|+..+|.|+| .++++++++.+ ++  .++.+.-...+.. ..+..+  ++.
T Consensus        11 ~~~~~~~k~~~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~-~~~kEr--l~~   87 (166)
T 2i9y_A           11 EASSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEA-KVAKER--IEA   87 (166)
T ss_dssp             CCSSSEEEEEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEE-EEEEEE--EEE
T ss_pred             cccCCccEEEEEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCc-eEEEEE--EEE
Confidence            4555455899999999999999999 569999999999 89999998765 22  2333322222211 122333  333


Q ss_pred             eeeCCCeEEEEEEecC----CceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041          344 CEQHEQEISFEQVEGD----FDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE  418 (663)
Q Consensus       344 ~E~pprrIsfr~VeGd----Fr~f~G~WtLeplgd-GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE  418 (663)
                      .+...+.++|+.++|+    ++.+.++|+|.+.++ ++|.|+|++.|++..+. .|.+  . .+.+.+..++++|.+.+-
T Consensus        88 iD~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~-~~~p--~-~~~~~~~~~~k~ie~~l~  163 (166)
T 2i9y_A           88 VEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEE-VAHP--E-TLLQFCVEVSKEIDEHLL  163 (166)
T ss_dssp             EETTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTT-TCCT--H-HHHHHHHHHHHHHHHHHH
T ss_pred             EeccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCC-CCCH--H-HHHHHHHHHHHHHHHHHh
Confidence            4456799999999998    468899999999743 37999999999975332 2222  1 122456667777766654

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=98.98  E-value=7.9e-09  Score=105.70  Aligned_cols=165  Identities=8%  Similarity=0.145  Sum_probs=116.6

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-c
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-E  316 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~  316 (663)
                      .++|.+.++.+||       +||.+      +.++ ...++++.+|++|++.||++|.|.+..++|.+++.+++++++ +
T Consensus        65 ~~gW~~~~~~~gv-------~Vy~~------~~~~-~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id  130 (258)
T 3fo5_A           65 KDNWVLSSEISQV-------RLYTL------EDDK-FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVD  130 (258)
T ss_dssp             CSCCEEEEEETTE-------EEEEE------ECSS-CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEE
T ss_pred             cCCCEEEecCCCe-------EEEEE------ECCC-ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcC
Confidence            3599999999999       99997      3344 445789999999999999999999999999999999999976 4


Q ss_pred             CCEEEEEEEeccc----eeEEEEEEEEEEEEe---eeCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeE
Q 006041          317 NNKVRILQEGCKG----LLYMVLHARVVMDIC---EQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLGSHHT  377 (663)
Q Consensus       317 gn~vrv~q~g~~g----ll~~~~~~rvVLDV~---E~ppr--rIsfr~Ve--------GdFr--~f~G~WtLeplgdGgT  377 (663)
                      ++.+ +++.....    +..--|.   ++...   .....  .|....+.        |.++  ...+.|.++|.+++.|
T Consensus       131 ~~~i-vY~~~~p~~~~~v~~RDFV---~lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t  206 (258)
T 3fo5_A          131 EDDA-IYHVTSPALGGHTKPQDFV---ILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLT  206 (258)
T ss_dssp             TTEE-EEEEEECCCTTCSSCEEEE---EEEEEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEE
T ss_pred             CCeE-EEEEecCCccCCCCCCEEE---EEEEEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCE
Confidence            4443 33321111    1001111   11111   11222  34445444        2233  5579999999999999


Q ss_pred             EEEEEEEEEeccCccchHHHHHH-HHHhhHHHHHHHHHHHHHhhhCC
Q 006041          378 LLKYSVESKMQKNSLLSEAIMEE-VIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       378 rVtYtve~eP~~gg~LP~~L~er-~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      +|+|..+++|   +.+|.++.|. .+...+..++.++++++++....
T Consensus       207 ~VtY~~q~dp---G~lP~~~~n~~g~s~~~~~t~~~~~~fl~~~~~~  250 (258)
T 3fo5_A          207 KVSYYNQATP---GVLNYVTTNVAGLSSEFYTTFKACEQFLLDNRND  250 (258)
T ss_dssp             EEEEEESCCG---GGHHHHHHHHHTSCCHHHHHHHHHHHHHHHTC--
T ss_pred             EEEEEEeeCC---CCCCceEEeccccchHHHHHHHHHHHHHHhcccc
Confidence            9999999998   4599988887 34556688899999999886443

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=98.97  E-value=6.3e-09  Score=104.40  Aligned_cols=167  Identities=14%  Similarity=0.116  Sum_probs=115.7

Q ss_pred             cCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEee
Q 006041          237 LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSR  315 (663)
Q Consensus       237 ~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVW-aVLTDyEnyPeWiP~V~sSrVLer  315 (663)
                      ..++|++.++.+||       +||.+...    .+...+.++++.+|++++++|+ .+|.|   .++|.+.|.++++++.
T Consensus        48 ~~~gW~~~~~~~gi-------~V~~k~~~----~~~~~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~  113 (237)
T 2pso_A           48 KFKGWVTCSSTDNT-------DLAFKKVG----DGNPLKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVET  113 (237)
T ss_dssp             HCCSCEEECCSSSC-------EEEEECCC----SSCCCCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEE
T ss_pred             CCCCCEEEecCCCe-------EEEEEEcC----CCCCcEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhceEEEEEE
Confidence            35689999999999       99999531    1333567899999999998886 68888   7999999999999987


Q ss_pred             -cCCEEEEEEE-ecc-ceeEEEEEEEEEEEEeee--CC--CeEEEEEEe-------cCCc--eeEEEEEEEEcCCCeEEE
Q 006041          316 -ENNKVRILQE-GCK-GLLYMVLHARVVMDICEQ--HE--QEISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLL  379 (663)
Q Consensus       316 -~gn~vrv~q~-g~~-gll~~~~~~rvVLDV~E~--pp--rrIsfr~Ve-------GdFr--~f~G~WtLeplgdGgTrV  379 (663)
                       +++...+++. ... .+...-|.   +++....  .+  -.|....++       |.++  .+.+.|.++|.++++|+|
T Consensus       114 id~~~~I~y~~~~~p~p~~~RDfv---~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~v  190 (237)
T 2pso_A          114 LDRQTEIYQYVLNSMAPHPSRDFV---VLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRL  190 (237)
T ss_dssp             EETTEEEEEEEECCSSSCCCEEEE---EEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEE
T ss_pred             cCCCcEEEEEEecCCCCcCCeEEE---EEEEEEEECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEE
Confidence             3444333332 110 01000011   1111110  11  123233332       3344  568999999998889999


Q ss_pred             EEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          380 KYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       380 tYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      +|...++|+  |++|.|+ +.++...+...+.+||+.+++....
T Consensus       191 t~~~~~Dp~--G~iP~~l-n~~~~~~~~~~l~~LR~~~~~~~~~  231 (237)
T 2pso_A          191 THICRIDLK--GHSPEWY-SKGFGHLCAAEVARIRNSFQPLIAE  231 (237)
T ss_dssp             EEEEEECCS--SSCTTTT-TTHHHHHHHHHHHHHHHTTSCC---
T ss_pred             EEEEEeCCC--CCchHHH-HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999995  7899999 9999999999999999998876544

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=98.93  E-value=6.6e-08  Score=94.90  Aligned_cols=142  Identities=14%  Similarity=0.203  Sum_probs=102.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC--EEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn--~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      .......|+||++.||+++.|+.+...|.|.++++++++.+++  .++.+.-. .+.-.-....  .++..+...+.++|
T Consensus        36 ~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGsVR~~t~~-~G~p~~~vkE--rL~~iD~~~~~~sY  112 (190)
T 3kl1_A           36 TSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVI-SGLPASTSTE--RLEFVDDDHRVLSF  112 (190)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEEEEEC-SSSSCEEEEE--EEEEEETTTTEEEE
T ss_pred             eEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCeEEEEEec-CCCccceEEE--EEEEEeccCCEEEE
Confidence            3444558999999999999999998889999999999876542  34443322 2211011222  33444556699999


Q ss_pred             EEEecCC--ceeEEEEEEEEc-----CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          354 EQVEGDF--DSFQGKWLFEQL-----GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       354 r~VeGdF--r~f~G~WtLepl-----gdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      +.++|++  +.+.+.-.+.+.     ++++|.|+|+..|+|.. + ....-+..++..-+...|++|++.+|+...
T Consensus       113 ~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~-g-~~~e~~~~~~~~~~~~gL~~L~~~~e~~~~  186 (190)
T 3kl1_A          113 RVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPE-G-NTEEDTKMFVDTVVKLNLQKLGVAATSAPM  186 (190)
T ss_dssp             EEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999975  578888888773     56689999999999642 2 223345777777889999999999998744

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=98.92  E-value=1.8e-08  Score=95.18  Aligned_cols=137  Identities=10%  Similarity=0.266  Sum_probs=92.9

Q ss_pred             EEEEEEEEEcCCHHHHHHH-HhccCcc-cccCcCC-cEEEEEeecCC--EEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          275 RCVVASITVKAPVSEVWNV-MTAYETL-PEIVPNL-AISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaV-LTDyEny-PeWiP~V-~sSrVLer~gn--~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ..+..++.|+||+++||++ +.|+.++ |.|+|.+ +++++++.+++  .++.+.-. .+...-....  +++..+...+
T Consensus         3 ~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~-~g~~~~~~kE--rl~~iD~~~~   79 (155)
T 2flh_A            3 KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFL-PEVSPSYQRE--EITEFDESSH   79 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEEC-TTSSSCEEEE--EEEEEETTTT
T ss_pred             cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEee-CCCCCcEEEE--EEEEEeCCCC
Confidence            4588999999999999999 7999999 9999976 66688876542  24433222 2200001122  2344445679


Q ss_pred             eEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHH--hhHHHHHHHHHHHHH
Q 006041          350 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIY--EDLPSNLCAIRDYVE  418 (663)
Q Consensus       350 rIsfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vr--e~L~~~L~ALR~RAE  418 (663)
                      .+.|+.++|+     ++.+.++++|.|.++|+|.++++..+++..+ ..|. +  ....  +.+..++++|.+++.
T Consensus        80 ~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~-~~~~-~--~~~~~~~~~~~~~k~ie~yll  151 (155)
T 2flh_A           80 EIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSD-IEEK-V--TPTKTSQSTLMYLRRLERYLS  151 (155)
T ss_dssp             EEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC---------C--CHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCC-CccC-h--hHhhhHHHHHHHHHHHHHHHh
Confidence            9999999986     5689999999998888899999999998632 2221 1  1223  456667777776653

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=98.90  E-value=5.3e-08  Score=97.00  Aligned_cols=141  Identities=12%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC---CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g---n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      ......+|+||+++||+++.||.+++.|.|.+++|++++.++   +.+|.+... .+.-.-....  .|+..+...+.++
T Consensus        55 ~~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~-~G~p~~~vkE--rL~~lDde~~~~s  131 (208)
T 3jrs_A           55 SSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVI-SGLPANTSRE--RLDLLDDDRRVTG  131 (208)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEEC-TTSSCCEEEE--EEEEEETTTTEEE
T ss_pred             eEEEEEEEeCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeEEEEEec-CCCccceEEE--EEEEEeccCCEEE
Confidence            455566899999999999999999999999999999886542   234433321 2211001122  2344445568999


Q ss_pred             EEEEecC--CceeEEEEEEEEcC-CCeEEEEEEEEEE-----eccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          353 FEQVEGD--FDSFQGKWLFEQLG-SHHTLLKYSVESK-----MQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       353 fr~VeGd--Fr~f~G~WtLeplg-dGgTrVtYtve~e-----P~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      |+.++|+  ++.+.+..+|.|.+ +++|.|+|+..|+     |.. + ....-+..++..-+...|++|++.+|+..
T Consensus       132 YsIieG~lpv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~-g-~~~e~a~~~~~~vy~~gL~~L~~~~e~~~  206 (208)
T 3jrs_A          132 FSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPE-G-NSEEDTRLFADTVIRLNLQKLASITEAMN  206 (208)
T ss_dssp             EEEEESSSSCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCT-T-SCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEeeCCcceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999986  56889999999963 4589999999887     211 2 22233466667677899999999999863

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=98.89  E-value=6.6e-08  Score=91.99  Aligned_cols=140  Identities=10%  Similarity=0.154  Sum_probs=96.9

Q ss_pred             EEEEEEEEcCCHHHHHHHH-hccCc-ccccCcC-CcEEEEEeecCC--EEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          276 CVVASITVKAPVSEVWNVM-TAYET-LPEIVPN-LAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVL-TDyEn-yPeWiP~-V~sSrVLer~gn--~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      .+..++.|+|||++||+++ .|+.+ .|.|+|. ++++++++.+++  .++.+.-...+-. -....  +++..+...+.
T Consensus         4 ~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~-~~~kE--rl~~iD~~~~~   80 (159)
T 4a8u_A            4 NYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPF-KYVKD--RVDEVDHTNFK   80 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSC-SEEEE--EEEEEETTTTE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCc-cEEEE--EEEEEccccCE
Confidence            4788999999999999999 99999 6999996 688899887643  3444332222111 01122  23444456799


Q ss_pred             EEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          351 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       351 Isfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ++|+.++|+     +..+..++++.|.++|+|.++++..+++.++...++--+ +...+.+..+++++.+.+-+
T Consensus        81 ~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~-k~~~~~~~~~~k~ie~yll~  153 (159)
T 4a8u_A           81 YSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQI-KASKEMGETLLRAVESYLLA  153 (159)
T ss_dssp             EEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            999999987     458899999999888889999999999864432222111 22344455677777776654

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.89  E-value=2e-08  Score=95.39  Aligned_cols=126  Identities=13%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCC--CeEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE--QEISF  353 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pp--rrIsf  353 (663)
                      .++.+|+|++|+++||++++|+++||+|+++++++  +..+++..... .+--+.    ...+    +....+  -...|
T Consensus        28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~--~~~~~~~w~a~-~~p~G~----v~v~----~~~~~~~gv~d~~   96 (156)
T 2qpv_A           28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGG--LEADGEDWIAK-GGPLGE----VRVN----FAPHNEFGVIDHV   96 (156)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTC--CEEETTEEEEE-CSSSCE----EEEE----ECCCCSSCBCCEE
T ss_pred             ceEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhh--cccCCCcEEEe-ccCCCc----EEEE----EecCCCceEEEEE
Confidence            47899999999999999999999999999999986  44455543222 121121    1121    221111  12344


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ....+.. ...+.|++.+.++ +|+|+|++...|  +.+.+.+   +.-...+...|++||+++|.
T Consensus        97 ~~l~~g~-~~~~~~rv~p~g~-GTeV~~tl~~~p--g~~~~~~---~~~~~~v~~dL~~LK~l~E~  155 (156)
T 2qpv_A           97 VTLPDGL-KVYNALRVTPNGS-GTEVSFTLLRLE--GMTDEDF---EQDASAITADLEMLKSLLEA  155 (156)
T ss_dssp             EECTTSC-EEEEEEEEEEETT-EEEEEEEEECCT--TCCHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCc-EEEEEEEEEeCCC-CEEEEEEEecCC--CCChhhh---hhhHHHHHHHHHHHHHHHhC
Confidence            4433222 3567899999876 599999996544  3333332   44445789999999999984

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=98.85  E-value=4.3e-08  Score=97.83  Aligned_cols=142  Identities=11%  Similarity=0.132  Sum_probs=98.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC---CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g---n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      ......+|+||+++||+++.||.+++.|.|.+++|++.+.++   +.+|..... .++-.-....  .|+..++..+.++
T Consensus        51 ~~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~-~G~p~~~vkE--rL~~lDd~~~~~s  127 (211)
T 3k3k_A           51 SSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVI-SGLPANTSTE--RLDILDDERRVTG  127 (211)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTCEEEEEES-SSSSCEEEEE--EEEEEETTTTEEE
T ss_pred             eEEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCCCCcEEEEEec-CCCccceEEE--EEEEEeccCCEEE
Confidence            455566899999999999999999999999999999886543   334443322 2211011122  2344445668999


Q ss_pred             EEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEe-----ccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC
Q 006041          353 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKM-----QKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDN  424 (663)
Q Consensus       353 fr~VeGd--Fr~f~G~WtLeplgdGgTrVtYtve~eP-----~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~  424 (663)
                      |+.++|+  ++.|.+.++|.|.++|+  |+|+..|+.     +. +.- ..-+..++..-+...|++|++.+|+.....
T Consensus       128 YsIieg~lpv~~Y~sti~V~p~~~gg--V~Wt~~fes~~~D~P~-g~~-~e~a~~~v~~iy~~gL~~L~~~~e~~~~~~  202 (211)
T 3k3k_A          128 FSIIGGEHRLTNYKSVTTVHRFEKEN--RIWTVVLESYVVDMPE-GNS-EDDTRMFADTVVKLNLQKLATVAEAMARNS  202 (211)
T ss_dssp             EEEEEETTGGGTCEEEEEEEEEEETT--EEEEEEEEEEEEECCS-SSS-SSCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEeecCcceeEEEEEEEEEECCCCC--EEEEEEEEEecCCCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999986  56899999999987765  899888872     11 111 112244555566789999999999886653

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.78  E-value=2.4e-07  Score=87.73  Aligned_cols=141  Identities=13%  Similarity=0.113  Sum_probs=90.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      ..++.++.|+||+++||++|+|.+.+++|++.-    ..+.+-.+.|+..++...+..+.. +.+... ++++  .++++
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~-v~e~--~p~~r   97 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFHGV-NHDV--TEPER   97 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEEEE-EEEE--ETTTE
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHHHHHhCCCCCCccceEEEEecccCCEEEEEEECCCCCE-EEEEEE-EEEE--eCCCE
Confidence            458888899999999999999999999998642    122333345665544443323321 222322 2232  47899


Q ss_pred             EEEEEEecC----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          351 ISFEQVEGD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       351 Isfr~VeGd----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      |.|....+.    .......|+|++.++++|+|++...+.+.  . ....++...+..+...+|..|++.+|....
T Consensus        98 l~~~~~~~~~~~~~~~~~v~~~l~~~~~ggT~lt~~~~~~~~--~-~~~~~~~~~~~~Gw~~~L~~Lk~~le~~~~  170 (178)
T 1xuv_A           98 IISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTI--E-DRDGMLQSGMEEGINDSYERLDELLEKMKK  170 (178)
T ss_dssp             EEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSH--H-HHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCcEEEEEEEEEcCCCCEEEEEEEEeCCH--H-HHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence            999876422    12467889999987568999998875321  0 111122223457889999999999987543

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.76  E-value=7e-07  Score=83.25  Aligned_cols=144  Identities=13%  Similarity=0.030  Sum_probs=92.6

Q ss_pred             eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCC
Q 006041          273 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  348 (663)
Q Consensus       273 ~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pp  348 (663)
                      ....++.++.|+||+++||++++|.+.+++|++.    +..+.+--+.|+..++...+..+.. +.+... ++++  .++
T Consensus        12 ~~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~-v~e~--~p~   87 (171)
T 2il5_A           12 EHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGI-YESL--VMD   87 (171)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEE-EEEE--ETT
T ss_pred             CCceEEEEEEeCCCHHHHHHHHCCHHHHHhccCCCCccceEEEecccCCCEEEEEEECCCCCE-EEEEEE-EEEE--cCC
Confidence            3567999999999999999999999999999853    2223333345665545444333321 222222 2232  478


Q ss_pred             CeEEEEEEecCC--ceeEEEEEEEEcCCCeEEEEEEEEEEeccC--ccchH-----HHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          349 QEISFEQVEGDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSE-----AIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       349 rrIsfr~VeGdF--r~f~G~WtLeplgdGgTrVtYtve~eP~~g--g~LP~-----~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ++|.|....+..  .....+|+|++.++|+|+|+++...-+..+  .....     ......+..+...+|..|++.+|+
T Consensus        88 ~rl~~~~~~~~~~~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~  167 (171)
T 2il5_A           88 EYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIET  167 (171)
T ss_dssp             TEEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEEecCCCCCcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999998764322  246788999998775799999886433100  00111     122335667888999999999987


Q ss_pred             h
Q 006041          420 R  420 (663)
Q Consensus       420 r  420 (663)
                      .
T Consensus       168 ~  168 (171)
T 2il5_A          168 S  168 (171)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.75  E-value=5.6e-07  Score=80.22  Aligned_cols=132  Identities=11%  Similarity=0.150  Sum_probs=87.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      ..++.++.|+||+++||++|+|.+++++|+... .+..--+.|+..++.... .+. .+.+..++ +++  .++++|.|.
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~-~~~~~~~~G~~~~~~~~~-~g~-~~~~~~~v-~~~--~p~~~l~~~   78 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEALVNPEIIKEYMFGT-TVVSDWKEGSQIVWKGEW-KGK-AYEDKGTI-LQF--NERSILQYS   78 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHHHSCTTHHHHHSSSC-EEECCCSTTCEEEEEEEE-TTE-EEEEEEEE-EEE--ETTTEEEEE
T ss_pred             ceEEEEEEECCCHHHHHHHHcCHHHhceeEcCC-cceeccCCCCEEEEEecC-CCc-eecccEEE-EEE--cCCCEEEEE
Confidence            468999999999999999999999999997422 222222355554443221 121 12223321 222  478999988


Q ss_pred             EEec--C-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          355 QVEG--D-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       355 ~VeG--d-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      ...+  .     .......|+|++.++ +|+|+++...-+.      . .....+..+....|.+|++.+|..
T Consensus        79 ~~~~~~g~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~------~-~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           79 HFSPLTGKPDLPENYHVVTITLTALKK-GVEVELTQDNNET------E-KEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             CBCGGGCCCSCGGGSCEEEEEEEECSS-CEEEEEEEEEESS------H-HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EccCccCCCCCCCCceEEEEEEEEcCC-CeEEEEEEecCCc------h-hhHhhHHhhHHHHHHHHHHHHhcc
Confidence            6532  0     114678899999865 6999998764331      1 345567788899999999999864

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=98.74  E-value=5.8e-08  Score=96.17  Aligned_cols=151  Identities=13%  Similarity=0.242  Sum_probs=101.9

Q ss_pred             eccccccCCe-eEEEEEEEEEcCCHHHHHHHH-h-ccCcc-cccCcCC-cEEEEEeecCC--EEEEEEEeccceeEEEEE
Q 006041          264 FDGLLENGGV-HRCVVASITVKAPVSEVWNVM-T-AYETL-PEIVPNL-AISKILSRENN--KVRILQEGCKGLLYMVLH  336 (663)
Q Consensus       264 ~D~~~e~~g~-~r~VrasIvI~APpeqVWaVL-T-DyEny-PeWiP~V-~sSrVLer~gn--~vrv~q~g~~gll~~~~~  336 (663)
                      .|+++.+... ...+..++.|+||+++||+++ . |+.++ |.|+|.+ ++++++ .+|+  .++.+.-. .+...-...
T Consensus        17 ~~~~~~~~~~~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~-~G~~~~~vk   94 (201)
T 2vq5_A           17 HQGIINQVSTVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFV-PGEFPHEYK   94 (201)
T ss_dssp             --CTTGGGCCEEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECC-TTCSSCEEE
T ss_pred             hhhhhhCccccceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEec-CCCcccEEE
Confidence            3455555444 347899999999999999995 6 99998 9999975 777988 6542  24433222 221001122


Q ss_pred             EEEEEEEeeeCCCeEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCc-cchHHHHHHHHHhhHHHHH
Q 006041          337 ARVVMDICEQHEQEISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-LLSEAIMEEVIYEDLPSNL  410 (663)
Q Consensus       337 ~rvVLDV~E~pprrIsfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg-~LP~~L~er~vre~L~~~L  410 (663)
                      .+  ++..++..+.++|+.++|+     ++.+..+.++.+.++|+|.++++.++++..+. ..|+..   ...+.+..++
T Consensus        95 Er--le~iDde~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~---~~~~~~~~~~  169 (201)
T 2vq5_A           95 EK--FILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL---ITTGPLAAMA  169 (201)
T ss_dssp             EE--EEEEETTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTT---CCSHHHHHHH
T ss_pred             EE--EEEEchhhCEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhH---HHHHHHHHHH
Confidence            22  3444556799999999986     45788888999988888999999999986432 122222   3455667778


Q ss_pred             HHHHHHHHhhh
Q 006041          411 CAIRDYVEKRE  421 (663)
Q Consensus       411 ~ALR~RAEkr~  421 (663)
                      ++|.+++.+..
T Consensus       170 KaiE~yLlanp  180 (201)
T 2vq5_A          170 DAISKLVLEHK  180 (201)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHHhCc
Confidence            88877776543

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=98.68  E-value=2.1e-07  Score=89.33  Aligned_cols=143  Identities=10%  Similarity=0.061  Sum_probs=97.4

Q ss_pred             CeeEEEEEEEEEcCCHHHHHHH-HhccCcc-cccCcC-CcEEEEEeecCC--EEEEEEEeccceeEEEEEEEEEEEEeee
Q 006041          272 GVHRCVVASITVKAPVSEVWNV-MTAYETL-PEIVPN-LAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQ  346 (663)
Q Consensus       272 g~~r~VrasIvI~APpeqVWaV-LTDyEny-PeWiP~-V~sSrVLer~gn--~vrv~q~g~~gll~~~~~~rvVLDV~E~  346 (663)
                      ++...+..++.|+|||++||++ +.|+.++ |.|+|. ++++++++.+++  .++.+.-...+-. -....  .++..+.
T Consensus         7 Mg~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~-~~~kE--rl~~iD~   83 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPL-TYMLH--KFDEIDA   83 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSC-CEEEE--EEEEEEG
T ss_pred             eeeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCC-ceEEE--EEEEEch
Confidence            4456799999999999999999 5899998 999996 677788877542  3444332222211 11122  2344455


Q ss_pred             CCCeEEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          347 HEQEISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       347 pprrIsfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ..+.++|+.++|+     ++.+..+.++. .++|+|.++++.++++.++..+++--+ +...+....+++++.+.+-+
T Consensus        84 ~~~~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~~~~~~~~e~~-k~~~~~~~~~~K~ie~ylla  159 (165)
T 3ie5_A           84 ANFYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHPKPGCTVNEEEV-KIGEKKAYEFYKQVEEYLAA  159 (165)
T ss_dssp             GGTEEEEEEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEECTTCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCEEEEEEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            6799999999987     55788888888 567789999999999875433333221 22344455667777766654

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=98.67  E-value=9.5e-07  Score=86.85  Aligned_cols=141  Identities=11%  Similarity=0.163  Sum_probs=100.1

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEe-ecC------CEEEEEEEeccceeEEEEEEEEEEEEeee
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-REN------NKVRILQEGCKGLLYMVLHARVVMDICEQ  346 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLe-r~g------n~vrv~q~g~~gll~~~~~~rvVLDV~E~  346 (663)
                      +=.-.....|+||+++||+++.||.+.+.|.|.++++++.+ .++      +.+|..... .++.+-....  .|+..++
T Consensus        29 ~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl~-~G~P~~~i~E--rL~~lDd  105 (189)
T 3oji_A           29 TCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVV-SGLPASTSVE--ILEVLDE  105 (189)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTCEEEEEEC-SSSSBSEEEE--EEEEEET
T ss_pred             ccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCcEEEEEec-CCCcCceEEE--EEEEEec
Confidence            44566677899999999999999999999999999999986 543      234433221 2211001122  3555666


Q ss_pred             CCCeEEEEEEecCC--ceeEEEEEEEEcC---C-----CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          347 HEQEISFEQVEGDF--DSFQGKWLFEQLG---S-----HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       347 pprrIsfr~VeGdF--r~f~G~WtLeplg---d-----GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      ..+.++|++++|++  +.+...-++.+.+   +     +.|.+.+...+++.. + .-.-.+..++..-+...|++|++.
T Consensus       106 e~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~-g-~t~e~~~~~v~~v~~~gL~~L~~~  183 (189)
T 3oji_A          106 EKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQ-G-NTEEDTRMFVDTVVKSNLQNLAVI  183 (189)
T ss_dssp             TTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCT-T-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            77999999999874  5888888888752   2     368888888888642 2 334456777888888999999999


Q ss_pred             HHh
Q 006041          417 VEK  419 (663)
Q Consensus       417 AEk  419 (663)
                      +|+
T Consensus       184 ~e~  186 (189)
T 3oji_A          184 STA  186 (189)
T ss_dssp             HHC
T ss_pred             hhc
Confidence            986

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=98.67  E-value=6.6e-08  Score=84.88  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=70.2

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      .++.++.|+||++.||++|+|++++++++|.+..                                              
T Consensus         3 ~~~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~g   82 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEWDDENLRNRFFSPEG   82 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEEEEEeCCceEEEEEEEEEcCCCcEEEEEeccC
Confidence            5789999999999999999999999999998865                                              


Q ss_pred             -------------cCCceEEEEEEEEecCCCCCHHHHH----HHHhhchHHHHHHHHHHHHHh
Q 006041          129 -------------RSSTTTLSYEVNVIPRLNFPAIFLE----RIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 -------------~~~gT~LtY~v~V~P~f~vP~~lie----~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                   .++||.++|+++..|..++|..++.    ..+++.+...|.+++++||+.
T Consensus        83 ~~~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~  145 (147)
T 2d4r_A           83 DFDRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  145 (147)
T ss_dssp             SCSEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChhheEEEEEEEECCCCcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                         2466999999999999888876666    666699999999999999973

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.66  E-value=5.6e-07  Score=81.77  Aligned_cols=131  Identities=16%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCccccc-CcC--C--cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEI-VPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeW-iP~--V--~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      |.++.++.|+||+++||++|+|.+++++| ++.  +  ..+.+-.+.|+..++...+..+-....+..+ ++++  .+++
T Consensus         1 m~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~-v~~~--~p~~   77 (142)
T 2lcg_A            1 MNITVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGT-YTKV--VENK   77 (142)
T ss_dssp             CEEEEEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEE-EEEE--ETTT
T ss_pred             CeEEEEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEE-EEEE--cCCC
Confidence            35788999999999999999999999999 653  1  1222223455555544443222101223332 2222  4789


Q ss_pred             eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          350 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       350 rIsfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      +|.|.. .|    ....|+|++.++ +|+|+++.....   ...     ...+..+....|..|++.++....
T Consensus        78 ~l~~~~-~g----~~~~~~l~~~~~-gT~l~~~~~~~~---~~~-----~~~~~~Gw~~~L~~L~~~le~~~~  136 (142)
T 2lcg_A           78 RIEYAF-GD----RTAKVEFLEAPQ-GVTVRVSFVAET---EYP-----VEQQQQGWQAILNNFKRHVESHLE  136 (142)
T ss_dssp             EEEEEE-TT----EEEEEEEEEETT-EEEEEEEEECCS---SSC-----HHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEEc-CC----CEEEEEEEEcCC-CEEEEEEEecCC---HHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999986 23    678899999875 799999866521   111     123567888899999999987543

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=98.66  E-value=3.5e-07  Score=82.00  Aligned_cols=132  Identities=14%  Similarity=0.119  Sum_probs=86.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCc----EEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCe
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLA----ISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~----sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      .++.++.|+||+++||++|+|.+++++|++.-.    .+.+-.+.|+..++... +..+.. ..+..+ ++++  .++++
T Consensus         4 ~~~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~-~~~~~~-v~~~--~p~~~   79 (147)
T 1z94_A            4 TIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQK-HAFGGR-YLEL--VPGER   79 (147)
T ss_dssp             CEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCE-EEEEEE-EEEE--ETTTE
T ss_pred             EEEEEEEeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCE-EEEEEE-EEEE--cCCCE
Confidence            367788999999999999999999999997521    12222335555444333 122211 223332 2222  47899


Q ss_pred             EEEEEEec--CCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          351 ISFEQVEG--DFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       351 Isfr~VeG--dFr-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      |.|....+  ++. .....|+|++.++ +|+|+++....+.  .     .....+..+....|.+|++.+|+
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~--~-----~~~~~~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           80 IRYTDRFDDAGLPGDMITTITLAPLSC-GADLSIVQEGIPD--A-----IPPENCYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEEEEESCCC---CEEEEEEEEEETT-EEEEEEEEECCCT--T-----SCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEEeCCCCCCcEEEEEEEEecCC-CEEEEEEEEcCCc--h-----hhHHHHHHHHHHHHHHHHHHHHh
Confidence            99987653  222 4678899999865 7999998876442  1     11244567888999999999875

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.63  E-value=9.6e-07  Score=80.96  Aligned_cols=130  Identities=10%  Similarity=0.067  Sum_probs=87.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCccccc-CcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEI-VPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeW-iP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      |.+..++.|+||+++||++++|.+.+++| ++.    +..+++--+.|+..++...+..+...+.+... ++++  .+++
T Consensus         1 m~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~-v~e~--~p~~   77 (144)
T 2lgh_A            1 MKISIEAHIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGT-FTRV--EAPT   77 (144)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEE-EEEE--ETTT
T ss_pred             CEEEEEEEeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEEECCCCCCEEEEEEECCCCCceEEeEEE-EEEE--eCCC
Confidence            35788999999999999999999999999 653    12233333456665554443333211223333 2233  4789


Q ss_pred             eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          350 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       350 rIsfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      +|.|... |   .....|+|++.++ +|+|++.... +.  . ..    ......+....|..|++.+|..
T Consensus        78 ~l~~~~~-~---~~~~~~~l~~~~~-gT~l~~~~~~-~~--~-~~----~~~~~~Gw~~~L~~L~~~le~~  135 (144)
T 2lgh_A           78 RLSFVMD-D---GREVDVQFASEPG-GTWVQETFDA-ET--S-HT----PAQQQAGWQGILDNFKRYVEAA  135 (144)
T ss_dssp             EEEEEET-T---CCEEEEEEEEETT-EEEEEEEEEC-CT--T-SC----HHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEec-C---CcEEEEEEEEcCC-CEEEEEEEEC-CC--H-HH----HHHHHHHHHHHHHHHHHHHhhC
Confidence            9999853 3   3578899999864 7999998765 21  1 11    1235668888999999999874

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.61  E-value=1.9e-06  Score=80.71  Aligned_cols=141  Identities=12%  Similarity=0.069  Sum_probs=91.1

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ...+..++.|+||+++||++++|.+.+++|++.-    ..++.--+.|+..++...+.++.. +....+ ++++  .+++
T Consensus        11 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~~~-v~e~--~p~~   86 (172)
T 2ldk_A           11 ALSFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFETHEFTVGGKAAYYMTGPDGTK-ARGWWQ-FTTI--EAPD   86 (172)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEECCSTTCEEEEEEECTTSCE-EEEEEE-EEEE--CSSS
T ss_pred             CceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCcccceEEEeecCCCEEEEEEECCCCCE-EeeEEE-EEEE--cCCC
Confidence            3458899999999999999999999999997531    223333345665554444333322 112222 2232  4789


Q ss_pred             eEEEEEEecC--------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          350 EISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       350 rIsfr~VeGd--------Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      +|.|....++        +......|+|++.++ +|+|++...+.+.   ..-..++...+..+....|..|++.+|...
T Consensus        87 rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  162 (172)
T 2ldk_A           87 HLEFDDGFADEHGAPVDELGVTHATVKLEPLEN-RTRMTIISTFESE---EQMQKMAEMGMEEGMREAIEQIDAVLSEPA  162 (172)
T ss_dssp             EEEEEEEEBCSSCCBCTTTCEEEEEEEEEEETT-EEEEEEEEEESCH---HHHHHHHHHTHHHHHHHHHHHHHHHHTCCS
T ss_pred             EEEEEEeecCCCCCccCCCccEEEEEEEEEcCC-CEEEEEEEEcCCH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence            9999875422        124677889999865 7999998875421   011122233457788999999999988644


Q ss_pred             C
Q 006041          422 G  422 (663)
Q Consensus       422 a  422 (663)
                      .
T Consensus       163 ~  163 (172)
T 2ldk_A          163 N  163 (172)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.59  E-value=6.8e-07  Score=80.51  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      |+|..++.|+|||++||++++|.+++++|++.  .+..--+.|+...+...+..    .....+ ++++  .++++|.|+
T Consensus         1 M~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~--~~~~~~~~Gg~~~~~~~~~~----~~~~~~-v~~~--~p~~~l~~~   71 (135)
T 3q6a_A            1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFS--SSSERWEQGKTITLRYEEYD----AELNIN-IERV--EDNQLIAFT   71 (135)
T ss_dssp             CCEEEEEEESSCHHHHHHHHHCTTTGGGTSSS--EESSCCCTTCEEEEECGGGT----C-CEEE-EEEE--ETTTEEEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHcCHHHhcccCCC--CCcccccCCCEEEEEEcCcC----ceEEEE-EEEE--cCCCEEEEE
Confidence            35889999999999999999999999999764  22222234555443322211    111212 1222  478999998


Q ss_pred             EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          355 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       355 ~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      ...|     ...|+|++.+ ++|+|+++...-+.  . ...  .......+...+|..|++.+|...
T Consensus        72 ~~~g-----~~~~~l~~~~-~gT~l~~~~~~~~~--~-~~~--~~~~~~~GW~~~l~~L~~~le~g~  127 (135)
T 3q6a_A           72 WGAH-----PITIQFEESE-AGTVVTTTEKDFDT--Q-DVK--QLLGQKEGWVYMLSCLKVYLEHGV  127 (135)
T ss_dssp             ETTE-----EEEEEEEEET-TEEEEEEEECCCCS--S-CHH--HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EcCC-----eEEEEEEECC-CCEEEEEEEcCCCc--c-hHH--HHhhchhCHHHHHHHHHHHHhcCc
Confidence            7642     7789999976 57999998663221  1 111  124567788899999999999754

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=98.58  E-value=1.2e-07  Score=86.59  Aligned_cols=82  Identities=13%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      .++.++.|++|+++||++++|+++|++|+|.+.+                                              
T Consensus         3 ~~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~   82 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVRRDKDARSIDVS   82 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEEEETTTCEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEEEcCCCcEEEEE
Confidence            5889999999999999999999999999999875                                              


Q ss_pred             -----------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcc
Q 006041          129 -----------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG  176 (663)
Q Consensus       129 -----------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~  176 (663)
                                       .++||.|+|+++..+.-.++..++..++.+.+..++.++++||+++++
T Consensus        83 ~~~G~f~~~~g~w~f~~~~~gt~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~~  147 (148)
T 1t17_A           83 LLYGPFKRLNNGWRFMPEGDATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHG  147 (148)
T ss_dssp             ESSTTSSCEEEEEEEEEETTEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCChhccEEEEEEEECCCCeEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                             245699999999999988889999999999999999999999998764

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.57  E-value=1.2e-06  Score=82.68  Aligned_cols=139  Identities=10%  Similarity=0.070  Sum_probs=87.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcC--Cc--EEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPN--LA--ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~--V~--sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      +.++.++.|+||+++||++|+|.+.+++|++.  +.  .+.+-.+.|+..++...+..+.. +.+..+ ++++  .++++
T Consensus        10 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~-v~e~--~p~~r   85 (178)
T 1xfs_A           10 LDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNK-FPNSGC-FLEV--TDEKR   85 (178)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCE-EEEEEE-EEEE--ETTTE
T ss_pred             ceEEEEEEecCCHHHHHHHhCCHHHHhhCCCCCCeeeeEEEEeeECCcEEEEEEECCCCCE-EEEEEE-EEEE--eCCCE
Confidence            45788889999999999999999999999764  21  22333345665555443323321 222222 2232  47899


Q ss_pred             EEEEEEec----CCc------------eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 006041          351 ISFEQVEG----DFD------------SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR  414 (663)
Q Consensus       351 Isfr~VeG----dFr------------~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR  414 (663)
                      |.|...-+    +..            .....|+|++.++ +|+|++...+.+   ......++...+..+....|..|+
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~  161 (178)
T 1xfs_A           86 LIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHNT---PGQRKLHEEMGFHEGWGTTITQLE  161 (178)
T ss_dssp             EEEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECSS---HHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCccccccccccccccccEEEEEEEEECCC-CEEEEEEEEcCC---HHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99886421    111            3577899999875 699999887531   101111111124678899999999


Q ss_pred             HHHHhhh
Q 006041          415 DYVEKRE  421 (663)
Q Consensus       415 ~RAEkr~  421 (663)
                      +.+|...
T Consensus       162 ~~le~~~  168 (178)
T 1xfs_A          162 ELLKQEK  168 (178)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhhh
Confidence            9998763

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.56  E-value=2.6e-06  Score=80.58  Aligned_cols=140  Identities=12%  Similarity=0.050  Sum_probs=91.6

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcC--C--cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee-eCC
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHE  348 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~--V--~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pp  348 (663)
                      ...+..++.|+||+++||++++|.+.+++|++.  +  ..+++--+.|+..++...+.++.. +.+...    +.+ .++
T Consensus        15 ~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~----v~e~~p~   89 (175)
T 2lf2_A           15 NKTITIKREFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMDFKEGGTWLYAMVGPNGEE-HWSICE----YAIIKPI   89 (175)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHTCHHHHHHSSSSSSSEEEEEEECCSTTCEEEEEEECSSSCE-EEEEEE----ECCCCSS
T ss_pred             CceEEEEEEEcCCHHHHHHHhCCHHHHhhCcCCCCccceEEEEeccCCCEEEEEEECCCCCE-EEeEEE----EEEEcCC
Confidence            345889999999999999999999999999753  1  223333346666555444433322 112222    233 477


Q ss_pred             CeEEEEEEecC--------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          349 QEISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       349 rrIsfr~VeGd--------Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      ++|.|....++        +.....+|+|++.++ +|+|++...+.+.   -.-..++...+..+....|..|++.+|..
T Consensus        90 ~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le~~  165 (175)
T 2lf2_A           90 ERFTGKDGFTDASGKLNTEMPRSNWDMRFIDKGE-ITEVQYHISYDDV---AQLEATIQMGFKEGITMAMENLDELLVSG  165 (175)
T ss_dssp             SEEEEEEEEESSTTCCCTTSCCEEEEEEEEEETT-EEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCCCCCcCCCCCcEEEEEEEEECCC-CEEEEEEEecCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence            99999865321        124678889999864 7999998775321   01112233346788999999999999876


Q ss_pred             hC
Q 006041          421 EG  422 (663)
Q Consensus       421 ~a  422 (663)
                      ..
T Consensus       166 ~~  167 (175)
T 2lf2_A          166 KK  167 (175)
T ss_dssp             HS
T ss_pred             ch
Confidence            54

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.53  E-value=1.9e-06  Score=79.04  Aligned_cols=130  Identities=12%  Similarity=0.148  Sum_probs=86.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCccccc-CcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEI-VPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeW-iP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      .+..++.|+||+++||++++|.+.+++| ++.    +..+.+-.+.|+..++...+..+...+.+... ++++  .++++
T Consensus         3 ~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~-v~e~--~p~~~   79 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGV-YDQV--KTNDL   79 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEE-EEEE--ETTTE
T ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEE-EEEE--eCCCE
Confidence            3778899999999999999999999999 653    12233333456665554443333211223332 2233  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          351 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       351 Isfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      |.|... |   .....|+|++.++ +|+|++.... +.  ...     ...+..+....|..|++.+|...
T Consensus        80 l~~~~~-g---~~~v~~~l~~~~~-gT~l~~~~~~-~~--~~~-----~~~~~~Gw~~~L~~L~~~le~~~  137 (144)
T 2l8o_A           80 IEYTIG-D---GRKVRIVFTHTGD-TTNIVESFDP-EE--TNP-----RELQQSGWQAILNSFKSYTENNL  137 (144)
T ss_dssp             EEEEET-T---CCEEEEEEEECSS-SEEEEEEECC-CS--SSC-----HHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             EEEEeC-C---CeEEEEEEEEcCC-CEEEEEEEeC-CC--HHH-----HHHHHHHHHHHHHHHHHHHHhHh
Confidence            999853 3   3578899999864 7999998765 31  111     12346688889999999988754

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.51  E-value=4e-07  Score=82.51  Aligned_cols=129  Identities=14%  Similarity=0.235  Sum_probs=85.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .++.++.|+||+++||++|+|.+++++|+|.+.   +-.+.|+..++.. . .+.    +..+ ++++  .++++|.|..
T Consensus         9 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~---~~~~~G~~~~~~~-~-~g~----~~~~-v~e~--~p~~~l~~~~   76 (143)
T 1xn6_A            9 DIKQTIVFNASIQKVWSVVSTAEGIASWFMPND---FVLEVGHEFHVQS-P-FGP----SPCK-VLEI--DEPNHLSFSW   76 (143)
T ss_dssp             CEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBC---CCCCTTCEECBCC-T-TCC----CCEE-EEEE--ETTTEEEEEE
T ss_pred             EEEEEEEEcCCHHHHHHHHhCHhHHHHhcCCCC---cCcCCCCEEEEEE-c-CCC----ceEE-EEEE--eCCCEEEEEE
Confidence            588999999999999999999999999999732   2223444432222 1 121    1222 2222  4789999886


Q ss_pred             EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHHh
Q 006041          356 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVEK  419 (663)
Q Consensus       356 VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP-----~~L~er~vre~L~~~L-~ALR~RAEk  419 (663)
                      ..+   .....|+|++.++|+|+|+++...-+..+...|     ..-....+..+....| ..|++.+|+
T Consensus        77 ~~~---~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le~  143 (143)
T 1xn6_A           77 DTD---GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             TTT---TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             eCC---CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            544   457789999988768999998774331000111     1123346777889999 999998873

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.49  E-value=5.4e-06  Score=77.80  Aligned_cols=139  Identities=11%  Similarity=0.074  Sum_probs=90.4

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ...+..++.|+||+++||++++|.+.+.+|++.-    ..+.+--+.|+..++...+.++.. +.+... ++++  .+++
T Consensus        12 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~-v~e~--~p~~   87 (164)
T 3pu2_A           12 ATRLEFRRHFAATPEQLWAALTSPALLPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRT-RGLTGR-VILA--EPPH   87 (164)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCE-EEEEEE-EEEE--ETTT
T ss_pred             CceEEEEEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCE-EEEEEE-EEEE--cCCC
Confidence            4468899999999999999999999999999731    223333345666555444433321 222332 2232  4789


Q ss_pred             eEEEEEEe-c--CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          350 EISFEQVE-G--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       350 rIsfr~Ve-G--dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      +|.|...- +  .-......|+|++.++ +|+|+++..+..   .-.....+...+..+....|..|++.++..
T Consensus        88 rl~~t~~~~~~~~~~~s~vt~~l~~~~~-gT~l~l~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~l~~~  157 (164)
T 3pu2_A           88 RLIHSELYDEDWTGGETLVTLQLLPVEG-GTELAMAVDYAT---PEARDAVAASAMATEMEEAYRHLDVMLAAL  157 (164)
T ss_dssp             EEEEEEBCC---CCSCEEEEEEEEEETT-EEEEEEEEECSS---TTHHHHHHTSTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEeccCCCCCCCEEEEEEEEEcCC-CEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            99988642 1  1123577889999875 699999887431   111222223346778888999999988765

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.47  E-value=1.6e-06  Score=80.83  Aligned_cols=137  Identities=10%  Similarity=0.113  Sum_probs=87.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCC
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQ  349 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~ppr  349 (663)
                      ..+..++.|+||+++||++++|.+.+++|++.-    ..+++--+.|+..++...+.++-. + +...    +.+ .+++
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~-~~g~----v~e~~p~~   81 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMIS-Y-TIAE----YLQVDAPY   81 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEE-E-EEEE----ESCCBTTT
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCE-E-EEEE----EEEEcCCC
Confidence            458889999999999999999999999997531    122222234544444333322321 1 2222    233 4779


Q ss_pred             eEEEEEEecC--------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          350 EISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       350 rIsfr~VeGd--------Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      +|.|....++        +.....+|+|++.++ +|+|++...+.+.  . ....++...+..+....|..|++.+++..
T Consensus        82 rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~~--~-~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  157 (164)
T 2l9p_A           82 YIEYLDYFATSKGEKDTSMPGMHITLNFEEVKG-KTTVTSTSTFPTE--S-AAQQAIDMGVETGMNSTLNQLEKLLNQKL  157 (164)
T ss_dssp             EEEEEEEEEBTTBSCCSSSCCEEEEEEECCCSS-SEEEEEEEECSST--T-HHHHHHHHTHHHHHHHHHHHHHHHHHSSC
T ss_pred             EEEEEEEecCCCCCccCCCCceEEEEEEEECCC-CEEEEEEEEcCCH--H-HHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            9999865321        124577889988765 7999998765321  1 11223333467788999999999988753

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.45  E-value=6.7e-07  Score=82.83  Aligned_cols=131  Identities=15%  Similarity=0.057  Sum_probs=87.3

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ...++.++.|+||+++||++|+|.+.+++|++.+...  -.+.|+..++...|..     .+..+ ++++  .++++|.|
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~--~~~~Gg~~~~~~~g~~-----~~~~~-v~e~--~p~~~l~~   77 (160)
T 2lak_A            8 SFVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEV--EPEPGGLYLVNVTGAR-----FARGS-FREV--VPVHRLAY   77 (160)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSSEEE--SCSTTCCEEECSSTTC-----CSSCC-EEEE--ETTTEEEE
T ss_pred             CceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCccee--eccCCCEEEEEEeCCc-----eEEEE-EEEE--cCCCEEEE
Confidence            3468999999999999999999999999999875433  2234554433222211     01111 1222  37899998


Q ss_pred             EEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          354 EQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       354 r~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      ....+.     .......|+|++.++ +|+|++....-+   .    ......+..+....|..|++.+|+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~---~----~~~~~~~~~gw~~~L~~Lk~~le~~~~  143 (160)
T 2lak_A           78 SFGWDGSEVVPPGSSLVEIDLIEQGG-GTLLRLTHSGLP---S----AEQCAGHEEGWAHYLGRLTEVAAGRDP  143 (160)
T ss_dssp             CCCCCSSSCCCTTSCEEEEEEEECSS-SEEEEEEEECCC---S----HHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             EEEecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEeCCC---C----HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            865432     125688999999875 699999775212   1    112244567888999999999987643

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.42  E-value=8.2e-06  Score=76.10  Aligned_cols=140  Identities=16%  Similarity=0.028  Sum_probs=87.9

Q ss_pred             CCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee
Q 006041          271 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE  345 (663)
Q Consensus       271 ~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V-----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E  345 (663)
                      +.....++.++.|+||+++||++++|.+.+++|++..     ..+++--+.|+..++.....++.. +.+..+ ++++  
T Consensus         4 ~~~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~-v~e~--   79 (161)
T 3rd6_A            4 SVIHSTFTIERTYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSFDFRVGGGEVSRFSYGGGPE-VRLDAQ-FQDI--   79 (161)
T ss_dssp             CEEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEECCSTTCEEEEEECSTTSCC-EEEEEE-EEEE--
T ss_pred             cccCceEEEEEEECCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEEccCcCCEEEEEEECCCCCE-EEEEEE-EEEE--
Confidence            3345678889999999999999999999999999543     223333345665555433222321 222332 2233  


Q ss_pred             eCCCeEEEEEEe---cC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          346 QHEQEISFEQVE---GD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       346 ~pprrIsfr~Ve---Gd-Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      .++++|.|....   |. ......+|+|++.++ +|+|+++...-+..+.-.     ......+-...|..|++.++..
T Consensus        80 ~p~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~-----~~~~~~GW~~~L~~L~~~le~~  152 (161)
T 3rd6_A           80 VPDQRIVFSYRMAIGPQPMSASLTTVELTPSGD-GTRLTYTEQGAFFDGVDS-----AKGREEGTRGLLEALAAELQKW  152 (161)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTCCC-----HHHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCEEEEEEEecCCCCCCCceEEEEEEEECCC-CEEEEEEEEecCcchhhh-----HHHHHHHHHHHHHHHHHHHhhc
Confidence            478999998652   21 224567889999875 699999887532111001     1355678888999999887754

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.42  E-value=1.2e-05  Score=75.81  Aligned_cols=139  Identities=15%  Similarity=0.114  Sum_probs=91.5

Q ss_pred             eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcC-----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeC
Q 006041          273 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  347 (663)
Q Consensus       273 ~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~-----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~p  347 (663)
                      ....++.++.|+||+++||++++|.+.+.+|+..     +..+++--+.|+..++...+.++.. +.+..+ ++++  .+
T Consensus         7 ~~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~G~~-~~~~g~-v~ev--~p   82 (166)
T 3put_A            7 EHTTFVIERRLTAPVARVFRAWSTPESKRQWFACHGEWVPLEYALDFRPGGTERNYTADTDGLL-HAYDAR-YIDI--VP   82 (166)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCHHHHHHHHTCC---CCSEEEECCSTTCEEEEEEECTTSCE-EEEEEE-EEEE--ET
T ss_pred             CcceEEEEEEECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEEeCcccCCEEEEEEECCCCCE-EEEEEE-EEEE--cC
Confidence            4567899999999999999999999999999842     2334444456666655444333322 222332 2233  47


Q ss_pred             CCeEEEEEEe---c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          348 EQEISFEQVE---G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       348 prrIsfr~Ve---G-dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      +++|.|....   | +......+|+|++.++ +|+|+++...-+..+.-.     ......+-...|..|++.+|...
T Consensus        83 ~~rlv~t~~~~~~~~~~~~s~vt~~l~~~~~-gT~ltl~~~~~~~~~~~~-----~~~~~~GW~~~L~~L~~~le~~~  154 (166)
T 3put_A           83 DTRIIYAYEMKLGQTRISASLVTVAFDVEPS-GTRMVFTEQVVFLDGYGD-----NGARLQGTEIGLDNLELFLVRET  154 (166)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEEEEEEECSS-SEEEEEEEEEEEETTCCC-----TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEEEecCCCCCCCceEEEEEEEECCC-CEEEEEEEEecCccchhh-----HHHHHHHHHHHHHHHHHHHhcCC
Confidence            8999988652   2 1224567889999874 699999876543111101     13456788889999999998753

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=98.40  E-value=1.2e-06  Score=82.81  Aligned_cols=81  Identities=26%  Similarity=0.352  Sum_probs=70.0

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------------------------
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------  128 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------  128 (663)
                      ..|+.++.|++|+++||++++|+++|++|+|.+.+                                             
T Consensus         5 ~~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~~~~~~~~~~~G~~~~~~s~~~~~~~~~~i~~~~~~   84 (172)
T 3tfz_A            5 RHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEINTWTSRRDLDPARRVIAYRQLE   84 (172)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             cEEEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCEEEEEEEEecCCEEEEEEEEEEEeCCCCEEEEEEee
Confidence            46899999999999999999999999999999986                                             


Q ss_pred             ----------------c-CCceEEEEEEEEecCCCC-------------CHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ----------------R-SSTTTLSYEVNVIPRLNF-------------PAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ----------------~-~~gT~LtY~v~V~P~f~v-------------P~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                      . +++|+++|+++..++-.+             +...+.+.+.+++..+|.++|++||+.
T Consensus        85 ~~gpf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~  160 (172)
T 3tfz_A           85 TAPIVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERR  160 (172)
T ss_dssp             CCTTEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                            2 378999999887754333             234789999999999999999999975

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.38  E-value=1.4e-05  Score=74.63  Aligned_cols=140  Identities=14%  Similarity=0.046  Sum_probs=91.7

Q ss_pred             eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeC
Q 006041          273 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH  347 (663)
Q Consensus       273 ~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V-----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~p  347 (663)
                      ....++.++.|+||+++||++++|.+.+++|++..     ..+++--+.|+..++.....++.. +.+..+ ++++  .+
T Consensus         7 ~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~-v~e~--~p   82 (162)
T 3q64_A            7 VHSTFIIERLYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEMDFRVGGKEVNAGGPKDGPI-HVYTAT-YQDI--VP   82 (162)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEECCSTTCEEEEEECCTTSCC-EEEEEE-EEEE--ET
T ss_pred             ccceEEEEEEeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEECCccCCEEEEEEECCCCCE-EEEEEE-EEEE--cC
Confidence            35568899999999999999999999999999653     123333345666555443323321 222332 2233  47


Q ss_pred             CCeEEEEEEe---cC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          348 EQEISFEQVE---GD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       348 prrIsfr~Ve---Gd-Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      +++|.|....   |. .......|+|++.++ +|+|+++...-+..+.-.     ......+-...|..|++.++...-
T Consensus        83 ~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~-----~~~~~~GW~~~L~~L~~~le~~~~  155 (162)
T 3q64_A           83 DQRIVYSYDMLFGETRISVSLATIQLFAEGE-GTRLVLTEQGAFLDGHDT-----PSTREHGTGVLLDLLDAFLDKTTL  155 (162)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTSSC-----HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEEecCCCCCCCceEEEEEEEEcCC-CEEEEEEEEecCccchhH-----HHHHHHHHHHHHHHHHHHHhhchh
Confidence            8999998753   21 224567889999875 699999887533111001     135667888999999999987643

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.33  E-value=8.6e-06  Score=78.55  Aligned_cols=125  Identities=15%  Similarity=0.137  Sum_probs=83.1

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ...+..++.|+||+++||++|+|.+.+++|++.+....  -+.|+..++...+ .   .  ...+ ++++  .++++|.|
T Consensus        35 ~~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~d--~~~Gg~~~~~~~~-~---~--~~~~-v~e~--~p~~rl~~  103 (184)
T 2nn5_A           35 TIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGE--LGVNGFWRFILPD-F---E--ETMP-FTDY--AEEKYLGV  103 (184)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEE--CSTTCEEEEEETT-E---E--EEEE-EEEE--ETTTEEEE
T ss_pred             CcEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCccccc--cCCCCEEEEEEeC-C---C--ceEE-EEEe--cCCCEEEE
Confidence            36799999999999999999999999999998654322  2355555443322 1   1  1121 2222  47899988


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      ...     ....+|+|++..+++|+|+++..+.-   + ++..  ......+...+|..|++.+|..
T Consensus       104 ~~~-----~~~v~~~l~~~~~~gT~l~~~~~~~~---g-~~~~--~~~~~~GW~~~L~~Lk~~le~g  159 (184)
T 2nn5_A          104 TWD-----TGIIYFDLKEQAPHQTLLVFSESLPE---N-FTTP--RHKDIAGWSIVLNRLKQVVETP  159 (184)
T ss_dssp             EET-----TEEEEEEEEEEETTEEEEEEEEEECT---T-CSSC--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEc-----CeEEEEEEEECCCCCEEEEEEEeccC---C-ccch--hhHHHHHHHHHHHHHHHHHhcC
Confidence            863     25778999993345799999843321   1 2111  1125668888999999999854

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=98.33  E-value=1.7e-06  Score=81.44  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=68.5

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee--------------------------------------------
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC--------------------------------------------  128 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~--------------------------------------------  128 (663)
                      ..+++.+|.|+||++.||++|||++++.+..|.+..                                            
T Consensus        17 ~~~i~~si~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~~G~~~~G~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~~p~   96 (155)
T 3ijt_A           17 SMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMPELAFTLVEVRENQCFSDLTATPF   96 (155)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSCCEEEEECCCBTTTEEEEEEEETT
T ss_pred             cEEEEEEEEEcCCHHHHHHHHhCcccccccchhhEeeeccCCCCCCCEEEEEeCCCCcEEEEEEEEeCCcEEEEEEecCC
Confidence            456999999999999999999999999999999864                                            


Q ss_pred             ------------cCCceEEEEEEEEecCCCCCHH-HHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 ------------RSSTTTLSYEVNVIPRLNFPAI-FLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 ------------~~~gT~LtY~v~V~P~f~vP~~-lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                  .+++|+++++.+.......|.. -....++.+++..|.+|++.||+
T Consensus        97 ~~~~~~h~l~p~~~ggTrvt~~~~~~G~~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~  154 (155)
T 3ijt_A           97 GNVLFEHEILENPDGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILET  154 (155)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEESCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             eEEEEEEEEEEcCCCcEEEEEEEEEECCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                        2478999999999776532322 23579999999999999999986

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=98.30  E-value=3.3e-06  Score=80.74  Aligned_cols=81  Identities=17%  Similarity=0.313  Sum_probs=72.2

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------------------------
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------  128 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------  128 (663)
                      .+|+.++.|++|+++||++++|+++|.+|+|.+..                                             
T Consensus         3 ~~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ts~~~~d~~~~~I~~~~   82 (169)
T 3tvq_A            3 ARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHRVPDKGSRTVRAHR   82 (169)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEETTEEEEEEEECCCTTSCCCEEEEEEEEEGGGTEEEEEE
T ss_pred             CeEEEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCCCEEEEEEEEEecCCCeEEEEEEEEEEcCCCcEEEEEE
Confidence            46889999999999999999999999999999887                                             


Q ss_pred             -----------------cCCceEEEEE--EEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 -----------------RSSTTTLSYE--VNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 -----------------~~~gT~LtY~--v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                       .++||.++|.  .++.|...+|...+.+++..+++..|.+||++||+.
T Consensus        83 l~~gPf~~~~g~W~f~p~~~gt~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~  147 (169)
T 3tvq_A           83 VETGPFAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDR  147 (169)
T ss_dssp             SSCTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChhheeeEEEEEECCCCEEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence                             2456988885  567777889999999999999999999999999975

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=98.30  E-value=1.2e-05  Score=76.21  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             EEEEEEEEcCCHHHHHHH-HhccCcc-cccCcCCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          276 CVVASITVKAPVSEVWNV-MTAYETL-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaV-LTDyEny-PeWiP~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      .+..++.+++||+.+|++ +.|+.++ |.|+|.+..+.-++.++  +.++.+.-...+-. -....  .++..+...+.+
T Consensus         5 ~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~veGdg~~Gsir~~t~~~g~~~-~~~kE--rle~iD~~~~~~   81 (154)
T 2wql_A            5 SHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGDGGAGTVRIITLPEGSPI-TTMTV--RTDAVNKEALSY   81 (154)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEESSSSTTCEEEEECCTTCSC-CEEEE--EEEEEETTTTEE
T ss_pred             EEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEEEECCCCCCeEEEEEEcCCCCc-eEEEE--EEEEEehhhCEE
Confidence            478899999999999975 5899985 99999876654455543  23444332222211 11122  344455567999


Q ss_pred             EEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          352 SFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       352 sfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      .|+.++|+     +..+..+..+.|.++|+|.++++.++++.++...|+-.+.. .......+++++.+++
T Consensus        82 ~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~-~~~~~~~~~KaiEayL  151 (154)
T 2wql_A           82 DSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKF-ADAQNTALFKAIEAYL  151 (154)
T ss_dssp             EEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHH-HHHHHHhHHHHHHHHH
Confidence            99999997     34778888999998889999999999987554444433332 2333455666666554

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.24  E-value=1.1e-05  Score=74.26  Aligned_cols=132  Identities=10%  Similarity=-0.052  Sum_probs=81.8

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCC----c--EEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNL----A--ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V----~--sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      .++.++.|+||+++||++++|.+.+.+|++.-    .  .+.+--+.|+..++...+.++.. +.+..+ ++++  .+++
T Consensus         3 ~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~-v~e~--~p~~   78 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQR-YKVSGQ-VTHV--KPPQ   78 (152)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCE-EEEEEE-EEEE--ETTT
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHHHhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCE-EEEEEE-EEEE--cCCC
Confidence            47788999999999999999999999998741    1  12222234444444433333321 222332 2233  4789


Q ss_pred             eEEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          350 EISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       350 rIsfr~VeGdF-----r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +|.|.....+.     .....+|+|++.++ +|+|+++..--+     -..  .......+-...|..|++.++-
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~l~~~~~~-----~~~--~~~~~~~GW~~~L~~L~~~l~~  145 (152)
T 3eli_A           79 SVGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHRELG-----DDE--MSLRHEEGWTSSLRKLAAELAL  145 (152)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEESCS-----CHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEccCC-----CHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence            99988654221     24566778888875 599998654111     111  2345667888999999988764

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.21  E-value=2.3e-05  Score=72.46  Aligned_cols=130  Identities=12%  Similarity=0.146  Sum_probs=83.5

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ...++.++.|+||+++||++|+|.+.+++|++.   +.+-.+.|+...+.  +..+.   .+..+ ++++  .++++|.|
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~---~~~~~~~Gg~~~~~--~~~g~---~~~g~-v~e~--~p~~~l~~   76 (151)
T 3q63_A            8 NRTVVVERQISHPPEKLWRALTQPHLIEEWLMK---NDFKPAVGHRFNIS--ADWGG---VLDCE-VLAV--EPNKTLSY   76 (151)
T ss_dssp             -CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCE---ECCCSSTTCEEEEE--CTTSC---EEEEE-EEEE--ETTTEEEE
T ss_pred             CCeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCc---CCCccCCCCEEEEE--CCCCC---EEEEE-EEEE--eCCCEEEE
Confidence            456889999999999999999999999999984   22222345554433  32221   12232 2232  47899999


Q ss_pred             EEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          354 EQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       354 r~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      ....++     .......|+|++.++ +|+|+++...-+. ..  ..  ....+..+-...|..|++.+|..
T Consensus        77 ~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~l~l~~~g~~~-~~--~~--~~~~~~~GW~~~L~~L~~~le~~  142 (151)
T 3q63_A           77 TWNLAHQDPAFDLRSVVTFTLTPTPT-GTHLRMEQSGFRP-DQ--RR--AYGGAKMGWPQFFEKLEQLLDRT  142 (151)
T ss_dssp             ECBBCCSSTTTCBCCEEEEEEEECSS-SEEEEEEEECCCT-TC--HH--HHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEecCCCCCCCCCCeEEEEEEEEcCC-CEEEEEEEeCCCc-ch--HH--HHHhhhhCHHHHHHHHHHHHhcc
Confidence            875421     124467789999876 5999998763221 11  11  12345677888999999988764

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.20  E-value=9.3e-06  Score=78.35  Aligned_cols=131  Identities=6%  Similarity=0.075  Sum_probs=86.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEecc-------------ceeEEEEEEEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCK-------------GLLYMVLHARVVMD  342 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~-------------gll~~~~~~rvVLD  342 (663)
                      .++.++.|+||+++||++|+|.+.+++|++.+   .+--+.|+..++.....+             +. ...+..+ +++
T Consensus        20 ~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~~---~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~-~~~~~g~-v~e   94 (191)
T 2k5g_A           20 SIRFERLLPGPIERVWAWLADADKRARWLAGG---ELPRQPGQTFELHFNHAALTAETAPARYAQYDR-PIVARHT-LLR   94 (191)
T ss_dssp             SEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC---CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGS-CEEEEEE-EEE
T ss_pred             eEEEEEEeCCCHHHHHHHHcCHHHHhhcCCCC---CCCccCCCEEEEEEcCCccccccCcccccccCC-CceeEEE-EEE
Confidence            48888999999999999999999999999875   222235555555443211             00 1223332 223


Q ss_pred             EeeeCCCeEEEEEEecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          343 ICEQHEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       343 V~E~pprrIsfr~VeGdF-r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      +  .++++|.|....++. ......|+|++.++ +|+|+++...-+  +   +.  ....+..+...+|..|++.+|...
T Consensus        95 ~--~pp~rl~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~--~---~~--~~~~~~~GW~~~L~~L~~~le~~~  164 (191)
T 2k5g_A           95 C--EPPRVLALTWGGGAGEAPSEVLFELSEAGE-QVRLVLTHTRLA--D---RA--AMLDVAGGWHAHLAVLAGKLAGQA  164 (191)
T ss_dssp             E--ETTTEEEEECCCCSSSSCCEEEEEEEECSS-SEEEEEEEECCC--S---HH--HHHHHTTTTTTHHHHHHHHHHTSC
T ss_pred             e--cCCCEEEEEeecCCCCCCEEEEEEEEEcCC-CEEEEEEEecCC--C---HH--HHHHHHHhHHHHHHHHHHHHCCCC
Confidence            3  478999987654321 14577899999875 599998876212  1   11  224566777889999999988653

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.19  E-value=3.5e-05  Score=72.82  Aligned_cols=138  Identities=12%  Similarity=0.136  Sum_probs=88.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      ..+..++.|+||+++||++++|-+.+.+|+..    +..+++--+.|+..++...+.++-. +.+..+ ++++  .++++
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~G~~-~~~~g~-~~ev--~p~~r   88 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEK-YAGYWE-ITAV--DEPHS   88 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEECCSTTCEEEEEEECTTSCE-EEEEEE-EEEE--ETTTE
T ss_pred             CEEEEEEEEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEcccCCcEEEEEEECCCCCE-EeeEEE-EEEE--eCCcE
Confidence            35888999999999999999999999999643    2223443456666655544434422 222332 2333  47899


Q ss_pred             EEEEEEe----cC----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          351 ISFEQVE----GD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       351 Isfr~Ve----Gd----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      |.|...-    |.    ......+|+|++.+ ++|+|+++..+..   ......++...+..+....|..|++.++..
T Consensus        89 lv~t~~~~~~~g~p~~~~~~s~vt~~l~~~~-~gT~lt~~~~~~~---~~~~~~~~~~g~~~GW~~~L~~L~~~l~~~  162 (168)
T 3uid_A           89 FSFLDGFADEDFNPNTDLPVSTNVYTFTEHD-GGTRATYVGTYAS---AEALQQVLDMGVIEGASSAINQIDALLTAT  162 (168)
T ss_dssp             EEEEEEEECTTSCBCSSCCCEEEEEEEEEET-TEEEEEEEEECSC---HHHHHHHHHTTHHHHHHHHHHHHHHHTCSC
T ss_pred             EEEEEeeccCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEecCC---HHHHHHHHHhcHHHHHHHHHHHHHHHHHhh
Confidence            9988642    21    12457889999986 5799999854321   101111222246778889999999887764

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=98.19  E-value=8.6e-06  Score=77.09  Aligned_cols=80  Identities=16%  Similarity=0.316  Sum_probs=70.6

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +++.++.|++|+++||++++|+++|++|+|..+.                                              
T Consensus         4 ~v~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~~~~rl~~~~~~~G~~~~~ts~~~~d~~~~~I~~~~~   83 (159)
T 3tl1_A            4 HTDNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSERVADPVTRTVRAQRV   83 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSEEEEEEEECCCTTSCCCEEEEEEEEETTTTEEEEEES
T ss_pred             eeEEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCEEEEEEEEEeccCceEEEEEEEEEEcCCCCEEEEEEc
Confidence            5889999999999999999999999999999877                                              


Q ss_pred             ----------------cCCceEEEEEE--EEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ----------------RSSTTTLSYEV--NVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ----------------~~~gT~LtY~v--~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                      .++||.++|.+  ++.|...++...+..++.++++..|.+||+.||+.
T Consensus        84 ~~gPf~~l~g~W~f~p~~~gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~  147 (159)
T 3tl1_A           84 ETGPFQYMNIVWEYAETAEGTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQA  147 (159)
T ss_dssp             SCTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCChhhccCEEEEEECCCCEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence                            24689888775  66667777777799999999999999999999975

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=98.16  E-value=1.8e-06  Score=79.01  Aligned_cols=79  Identities=19%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +|+.++.|+||++.||++|+|++++.+++|.+.+                                              
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G~~~~e~i~~~d~~~~~~~~~~~~g   82 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTEEELVERLVERDESARRLVYTMPDP   82 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEESSSSSSCEEEEEEEEETTTTEEEEEEEEC
T ss_pred             eEEEEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEEEeCCCCEEEEEEEEEeCCCCEEEEEEecC
Confidence            6899999999999999999999999999998766                                              


Q ss_pred             ----------------cCCceEEEEEEEEec-CCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ----------------RSSTTTLSYEVNVIP-RLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ----------------~~~gT~LtY~v~V~P-~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                      .++||.++|+.++.| +..++...+. .++.++...|.+|++.+|+.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~  144 (151)
T 2le1_A           83 PFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSPETARELESV-IGDGVFAVGLNALAERYGRL  144 (151)
T ss_dssp             SSSEEEEEEEEEEEESSSSCEEEEEEEEEEECHHHHHHHHHH-TTTTHHHHHHHHHHHHTTTT
T ss_pred             CCCceeEEEEEEEEECCCCcEEEEEEEEEEecCCCCCHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence                            135799999998887 3455555666 78899999999999998864

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=98.15  E-value=8.2e-06  Score=75.02  Aligned_cols=80  Identities=14%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +|+.++.|++|++.||++|||+++|++++|.+.+                                              
T Consensus         4 ~i~~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYHYKLLVNGE   83 (162)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             EEeeEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCCeEEEEEEEEeeeEEEEEEEEEEEEecCCCcEEEEEEEec
Confidence            4888999999999999999999999999998865                                              


Q ss_pred             -----------------cCCceEEEEEEEEecCCC---CCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 -----------------RSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 -----------------~~~gT~LtY~v~V~P~f~---vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                       .++||+|+|++++.+...   ++..++....++-+...+..+++.+|+.
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~  149 (162)
T 2pcs_A           84 GGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKS  149 (162)
T ss_dssp             ETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                             125799999888887544   4666888888888889999999988863

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.12  E-value=1.3e-05  Score=76.32  Aligned_cols=96  Identities=18%  Similarity=0.294  Sum_probs=85.1

Q ss_pred             CCceEEEEEEccC-CcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041           79 QRKVHCEVEVVSW-RERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~-~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      .++|.|-....+. +-..+.+...|+++++.+|++|.|.+...+|.|++.+                             
T Consensus        11 ~~gv~v~~~~~~~~~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~~~~~i~y~~~~~p~p~~~RD~v   90 (189)
T 3qsz_A           11 AEGIKVYVRNVEGSPLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKATDTEQYHYLDNSAPWPVSNRDGV   90 (189)
T ss_dssp             ETTEEEEEECCTTCSSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEECSSEEEEEEEECCSSSCCCEEEE
T ss_pred             CCCEEEEEEeCCCCCeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeecCCceEEEEEeecCCCcCCcceE
Confidence            4567777776655 3467999999999999999999999999999999988                             


Q ss_pred             --------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHH
Q 006041          129 --------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNL  164 (663)
Q Consensus       129 --------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL  164 (663)
                                                                  .+++|.++|.+++.|+.++|..++...+++.++..|
T Consensus        91 ~~~~~~~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p~~~~t~vt~~~~~dp~G~iP~~lvn~~~~~~~~~~l  170 (189)
T 3qsz_A           91 YHFTYEKAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVPDADGVDVTYQMHASPGGSIPSWLANQTVVETPFGTL  170 (189)
T ss_dssp             EEEEEEECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEECSSSEEEEEEEEECSCSSSCHHHHHHTTTHHHHHHH
T ss_pred             EEEEEEECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEECCCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence                                                        236799999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 006041          165 QALACRAERS  174 (663)
Q Consensus       165 ~Ai~~~Ae~~  174 (663)
                      ++|++++++.
T Consensus       171 ~~L~k~~~~~  180 (189)
T 3qsz_A          171 KALRSHLRQA  180 (189)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHhhhc
Confidence            9999999864

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.11  E-value=1.6e-05  Score=72.64  Aligned_cols=128  Identities=15%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .++.++.|+||+++||++|+|.+++++|++.+   .+-.+.|+..++.. . .+.    +..+ ++++  .++++|.|..
T Consensus         6 ~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~---~~~~~~Gg~~~~~~-~-~g~----~~~~-v~e~--~p~~~l~~~~   73 (146)
T 1xn5_A            6 DIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEN---DLKAETGHHFHLQS-P-FGP----SPCQ-VTDV--ERPIKLSFTW   73 (146)
T ss_dssp             CEEEEEEESSCHHHHHHHTTSHHHHHTTSCCB---CCCSCTTCEEEEEC-S-SCE----EEEE-EEEE--ETTTEEEEEE
T ss_pred             EEEEEEEEcCCHHHHHHHHhChhHHHHhcCCC---CCCccCCCEEEEEe-c-CCc----eEEE-EEEE--eCCcEEEEEE
Confidence            48889999999999999999999999999864   12123444433332 1 121    2222 2222  4789999886


Q ss_pred             EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccC------ccchHHHHHHHHHhhHHHHH-HHHHHHHHhh
Q 006041          356 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN------SLLSEAIMEEVIYEDLPSNL-CAIRDYVEKR  420 (663)
Q Consensus       356 VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~g------g~LP~~L~er~vre~L~~~L-~ALR~RAEkr  420 (663)
                      ..   ......|+|++.++ +|+|+++...-+..+      +.. .......+..+-...| ..|++.++..
T Consensus        74 ~~---~~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~GW~~~l~~~L~~~l~~~  140 (146)
T 1xn5_A           74 DT---DGWSVTFHLKEEEN-GTIFTIVHSGWKQGDTKVEKAGAE-SAVVHERMDRGWHDLVNERLRQIVELE  140 (146)
T ss_dssp             TT---TTEEEEEEEEECSS-SEEEEEEEECCCSTTCBCSSSSSB-HHHHHHHHHHHHHHHTTTTTHHHHC--
T ss_pred             eC---CCEEEEEEEEEcCC-CEEEEEEEEEecCCCcccccccch-hHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            52   23567899999875 599999875322100      000 1223445667888888 8898888754

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=98.11  E-value=7.5e-05  Score=67.91  Aligned_cols=109  Identities=7%  Similarity=0.219  Sum_probs=79.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      ..+..++.|++||++||+++.|+..+| |-+.          |.               .     +++..+...+.+.|+
T Consensus         5 g~~~~e~~i~~~a~k~w~~~~~~~~~p-~g~~----------G~---------------~-----~ie~iD~~~~~~~y~   53 (122)
T 1vjh_A            5 GALSVKFDVKCPADKFFSAFVEDTNRP-FEKN----------GK---------------T-----EIEAVDLVKKTMTIQ   53 (122)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHHTTSC-SSTT----------CE---------------E-----EEEEEETTTTEEEEE
T ss_pred             cEEEEEEEecCCHHHHHHHHhhcccCC-ccCC----------Cc---------------c-----EEEEEecccCEEEEE
Confidence            358899999999999999999998888 6432          10               0     234444567999999


Q ss_pred             EEecCC----ceeEEEEEEEEcC-CCeEEEEEEEEEEeccCccc-hHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          355 QVEGDF----DSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLL-SEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       355 ~VeGdF----r~f~G~WtLeplg-dGgTrVtYtve~eP~~gg~L-P~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .++|++    +.+.++|+|.+.+ +++|.+++++.|+...+... |.-+     .+.+..+++++.+++-+
T Consensus        54 iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~yll~  119 (122)
T 1vjh_A           54 MSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSI-----IDESVKYFKKLDEAILN  119 (122)
T ss_dssp             EECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred             EEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHH-----HHHHHHHHHHHHHHHhh
Confidence            999997    6999999999974 55799999999997543333 3333     23445566666665543

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=97.93  E-value=3.1e-05  Score=71.93  Aligned_cols=79  Identities=15%  Similarity=0.282  Sum_probs=68.2

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +|..++.|+||+++||++|+|+++|.+++|.+.+                                              
T Consensus         3 ~v~~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~GG~vR~~~~~~G~~~~Erl~~~D~~~~~~~y~iv~g~~~~~   82 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRVRHLANPDGETIIERLEVFNDKERYYTYSIMNAPFPVT   82 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGGGTEEEEECTTSCEEEEEEEEEETTTTEEEEEEEECSSSEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeCCCeEEEEEeCCCCEEEEEEEEEeCCCCEEEEEEecCCCcee
Confidence            5889999999999999999999999999998876                                              


Q ss_pred             ---------c---CCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ---------R---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ---------~---~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                               .   ++||.++|+.++.| -.+..-.+...++.-.-.+|.+|++++|.+
T Consensus        83 ~~~~~~~v~p~~~~~gt~v~w~~~~~p-~g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~  139 (146)
T 3f08_A           83 NYLSTIQVKEGTESNTSLVEWSGTFTP-VAVSDEEAINLVHGIYSDGLKALQHAFLDL  139 (146)
T ss_dssp             EEEEEEEEEECSSTTCEEEEEEEEEEE-SSSCHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             EEEEEEEEEEecCCCcEEEEEEEEEEe-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                     1   36899999999998 455566677788889999999999998864

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=97.90  E-value=6.7e-06  Score=75.85  Aligned_cols=130  Identities=18%  Similarity=0.274  Sum_probs=81.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      ..++.++.|+||+++||++|+|.+++++|++.+   ..-.+.|+..++.. . .+.    +..+ ++++  .++++|.|.
T Consensus        10 ~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~---~~~~~~Gg~~~~~~-~-~g~----~~~~-v~e~--~p~~~l~~~   77 (152)
T 2kew_A           10 PDITKSITLEAPIQKVWETVSTSEGIAKWFMPN---DFQLKEGQEFHLQS-P-FGP----SPCK-VLAV--QAPTELSFE   77 (152)
T ss_dssp             CCEEEEEEECSCHHHHHHHSSSSHHHHHHHCSC---CCCSCSSCCBCSSS-S-CCS----CCBE-EEEE--ETTTEEEEE
T ss_pred             cEEEEEEEECCCHHHHHHHHhCHHHHHHhcCCC---CCCCCCCCEEEEEe-c-CCc----eEEE-EEEE--eCCcEEEEE
Confidence            358899999999999999999999999998872   11112333322211 1 111    1222 2222  478999987


Q ss_pred             EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHHhh
Q 006041          355 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVEKR  420 (663)
Q Consensus       355 ~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP-----~~L~er~vre~L~~~L-~ALR~RAEkr  420 (663)
                      ...+   .....|+|++.++ +|+|++....-+......|     .......+..+-..+| ..|++.+|..
T Consensus        78 ~~~~---~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~g  145 (152)
T 2kew_A           78 WDTE---GWVVTFQLEDLGE-KTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEEL  145 (152)
T ss_dssp             CTTS---CCEEEEEEECCSS-CEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTCS
T ss_pred             EccC---CEEEEEEEEECCC-CEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            5433   4577899999876 5999987653221000011     1122345777888999 9999998754

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=97.85  E-value=4.9e-05  Score=68.86  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=63.7

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------------------------
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------  128 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------  128 (663)
                      .+++.++.|++|++.||++|||++++++++|.+.+                                             
T Consensus        13 m~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~   92 (157)
T 2ns9_A           13 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSGR   92 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEEEEEEEEESSSSEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             EEEeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEEECCCEEEEEEEEEEcceeEEEEEEEEEEecCCCcEEEEEEEec
Confidence            36999999999999999999999999999998742                                             


Q ss_pred             ----------------cCCceEEEEEEEEecCCC---CCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 ----------------RSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 ----------------~~~gT~LtY~v~V~P~f~---vP~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                      .++||+|+|+.++.....   +...++....++.+-..+..+++.+|
T Consensus        93 ~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e  155 (157)
T 2ns9_A           93 GAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  155 (157)
T ss_dssp             CSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCccEEEEEEEEEEeCCCcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                            247899999987655432   44557888888888888888877765

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=97.85  E-value=0.0001  Score=71.32  Aligned_cols=125  Identities=15%  Similarity=0.163  Sum_probs=83.5

Q ss_pred             CeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          272 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       272 g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      +..+.+..++.|+||+++||++++|.+.+++|++..   ..--+.|+..++.  +.       ... .++++  .++++|
T Consensus        18 ~~~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~---~~d~~~Gg~~~~~--~~-------~~g-~v~e~--~pp~rl   82 (181)
T 4fpw_A           18 GEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP---KGDLREGGNFALQ--GN-------ASG-DILRC--EPPRRL   82 (181)
T ss_dssp             EEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE---ESCCSTTCEEEES--SS-------CEE-ECCEE--ETTTEE
T ss_pred             CCCceEEEEEEECCCHHHHHHHHcChHHHhhccCCC---ccCCCCCCEEEEE--ec-------CCE-EEEEE--cCCcEE
Confidence            446789999999999999999999999999998753   2222344443221  11       011 12222  478999


Q ss_pred             EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          352 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       352 sfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      .|....++-......|+|++.+ ++|+|+++....+      +. . ...+..+-...|..|++.++..
T Consensus        83 ~~tw~~~~~~~s~vt~~l~~~~-~gT~Ltl~~~~~~------~e-~-~~~~~~GW~~~L~~L~~~L~G~  142 (181)
T 4fpw_A           83 TISWVYEGKPDSEVELRLSEEG-DGTLLELEHATTS------EQ-M-LVEVGVGWEMALDFLGMFIRGD  142 (181)
T ss_dssp             EEEEBCTTSCCEEEEEEEEEET-TEEEEEEEEEESC------HH-H-HHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEcCCCCcEEEEEEEEECC-CcEEEEEEEEcCC------HH-H-HHHHHHhHHHHHHHHHHHhCCC
Confidence            9987654433457889999975 5799999876422      12 1 2356678888999999988643

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=97.80  E-value=5.4e-05  Score=68.96  Aligned_cols=124  Identities=14%  Similarity=0.078  Sum_probs=81.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      ..+..++.|+||+++||++++|.+.+++|++....  +-.+.|+..++.    .+-    +..+ ++++  .++++|.|.
T Consensus        11 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~--~d~~~Gg~~~~~----~G~----~~g~-v~e~--~p~~~l~~~   77 (145)
T 1x53_A           11 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPAT--LEADRGGKFHMV----DGN----VSGE-FTDL--VPEKHIVMK   77 (145)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCB--CCCSTTCCCBBT----TTT----EECC-EEEE--ETTTEEEEE
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCce--EECCCCCEEEEE----CCe----eEEE-EEEE--eCCCEEEEE
Confidence            46889999999999999999999999999865432  222344432221    121    1222 2233  478999987


Q ss_pred             EEecCC--c-eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHHhh
Q 006041          355 QVEGDF--D-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVEKR  420 (663)
Q Consensus       355 ~VeGdF--r-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~-~L~ALR~RAEkr  420 (663)
                      ....+.  . ....+|+|++.+ ++|+|+++...-+.      ..  ...+..+... +|..|++.+|..
T Consensus        78 ~~~~~~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~------~~--~~~~~~Gw~~~~l~~L~~~le~g  138 (145)
T 1x53_A           78 WRFKSWPEGHFATITLTFIDKN-GETELCMEGRGIPA------PE--EERTRQGWQRYYFEGIKQTFGYG  138 (145)
T ss_dssp             EEETTSCTTCCEEEEEECCBCS-SCEEEEEEEEEEEH------HH--HHHHHHTTHHHHHHHHHHHTCCC
T ss_pred             EecCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCH------HH--HHHHHhchhHHHHHHHHHHHhcC
Confidence            654322  1 356788998875 57999998543331      11  3456677787 799999987653

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=97.77  E-value=8.6e-05  Score=68.70  Aligned_cols=82  Identities=11%  Similarity=0.154  Sum_probs=60.4

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee--------------------------------------------
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC--------------------------------------------  128 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~--------------------------------------------  128 (663)
                      .-.|+.++.|++|++.||+.+||+++|++|+|.+.+                                            
T Consensus         3 ~~~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~~~~~~~~~~~~G~~~~~~~~~v~e~~p~~~i~~~~~~g   82 (155)
T 3ggn_A            3 ETVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPAPLGTVSWEAELTADEPGKRIAWRSLPG   82 (155)
T ss_dssp             -CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSSSEEEEEEECCTTTCEEEEEEEEEEEETTTEEEEEECTT
T ss_pred             ccEEEEEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecCCeeEEEEEecCCcceEEEEEEEEEecCCCEEEEEECCC
Confidence            457899999999999999999999999999999865                                            


Q ss_pred             -------------c--CCceEEEEEEEEecCCCCCHH----HHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 -------------R--SSTTTLSYEVNVIPRLNFPAI----FLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 -------------~--~~gT~LtY~v~V~P~f~vP~~----lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                   .  ++||.++|+++..|+..+-..    +.....++.+...|+.+++.+|.-
T Consensus        83 ~~~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~  147 (155)
T 3ggn_A           83 ARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELG  147 (155)
T ss_dssp             CSSCEEEEEEEEECSSSSCEEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcceEEEEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence                         2  248999999999987654332    334457777888888888888864

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=97.76  E-value=6.4e-05  Score=71.24  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      ++.+|.|++|++.||+.+.|.++|++++|+|++                                               
T Consensus        29 ~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~~~~~~~~w~a~~~p~G~v~v~~~~~~~~gv~d~~~~l~~g~~~~~~  108 (156)
T 2qpv_A           29 RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGEDWIAKGGPLGEVRVNFAPHNEFGVIDHVVTLPDGLKVYNA  108 (156)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEETTEEEEECSSSCEEEEEECCCCSSCBCCEEEECTTSCEEEEE
T ss_pred             eEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhhcccCCCcEEEeccCCCcEEEEEecCCCceEEEEEEecCCCcEEEEE
Confidence            589999999999999999999999999999962                                               


Q ss_pred             -----cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 -----RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 -----~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                           .+.||.++|++.+.|.+.+|.+   +.-++.+...|+.+|+.+|
T Consensus       109 ~rv~p~g~GTeV~~tl~~~pg~~~~~~---~~~~~~v~~dL~~LK~l~E  154 (156)
T 2qpv_A          109 LRVTPNGSGTEVSFTLLRLEGMTDEDF---EQDASAITADLEMLKSLLE  154 (156)
T ss_dssp             EEEEEETTEEEEEEEEECCTTCCHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEEEEEecCCCCChhhh---hhhHHHHHHHHHHHHHHHh
Confidence                 2368999999998887766655   4445568888899999887

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=97.70  E-value=0.00013  Score=68.30  Aligned_cols=85  Identities=11%  Similarity=0.290  Sum_probs=69.6

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchh----hhhcccccee------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYER----LADFVPNLAC------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~----la~fiP~l~~------------------------------------------  128 (663)
                      .|+.++.|++|+++||++++|+++    +.+|+|-...                                          
T Consensus         8 ~v~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~~~~~~I~~~~~~   87 (161)
T 3p9v_A            8 ELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNNAYRWEMEKVGVDKHAIQSVYACTYHADKEAGKITWSPIK   87 (161)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETTEEEEEECCBSSGGGCBCCEEEEEEEEETTTTEEEEEECT
T ss_pred             EEEEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEcCCCCEEEEEEec
Confidence            478899999999999999999999    5555554222                                          


Q ss_pred             ---------------cC-CceEEEEEEEEecCCCCCHH---HHHHHHhhchHHHHHHHHHHHHHhccccc
Q 006041          129 ---------------RS-STTTLSYEVNVIPRLNFPAI---FLERIIRSDLPVNLQALACRAERSFGWNQ  179 (663)
Q Consensus       129 ---------------~~-~gT~LtY~v~V~P~f~vP~~---lie~~lr~dLp~nL~Ai~~~Ae~~~~~~~  179 (663)
                                     .+ ++|.++|+++..+++++|.+   ++..++.+-+-.++.|+.+||..+|....
T Consensus        88 g~~~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~~~~~  157 (161)
T 3p9v_A           88 GEGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKKAFLEHH  157 (161)
T ss_dssp             TSTTEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred             CccceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                           23 44899999999999888866   67888888899999999999998876543

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=97.69  E-value=0.00098  Score=65.17  Aligned_cols=129  Identities=15%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             CCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          271 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       271 ~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      .+..+.+..+.+++||+++||+.|||.+.+.+|+..   +.+--+.|+..++.    ..     ...+ ++++  .++++
T Consensus        28 ~~~~~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~---~~~d~r~GG~~~~~----~~-----~~g~-v~ev--~pp~r   92 (192)
T 2luz_A           28 AGEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIE---PKGDLREGGNFALQ----GN-----ASGD-ILRC--EPPRR   92 (192)
T ss_dssp             TEEEEEEEEEEEESSCHHHHHHHHHCHHHHTTTSCC---EEECCSTTSEEEET----TS-----EEEE-EEEE--ETTTE
T ss_pred             CCCceEEEEEEEeCCCHHHHHHHHcCHHHHheeeCC---CcccCccCcEEEee----cc-----ccce-EEEE--ecCee
Confidence            344677899999999999999999999999999975   33434455544321    11     1112 2333  47899


Q ss_pred             EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          351 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       351 Isfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      |.|.....+-....-+|+|++.++ +|+|++.....+       .... ..+..+-...|..|+..++....+
T Consensus        93 L~~tw~~~~~~~~~vt~~L~~~g~-gT~Ltl~h~~~~-------~~~~-~~~~~GW~~~Ld~L~~~L~g~~p~  156 (192)
T 2luz_A           93 LTISWVYEGKPDSEVELRLSEEGD-GTLLELEHATTS-------EQML-VEVGVGWEMALDFLGMFIRGDLPG  156 (192)
T ss_dssp             EEEEEEESSSCEEEEEEEEEEETT-EEEEEEEEEESC-------HHHH-HHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred             EEEEEeecCCCCceEEEEEEEcCC-cEEEEEEEECCC-------HHHH-HHHhccHHHHHHHHHHHhCCCCCC
Confidence            998865544345567899999875 699998876432       2222 234557788999999998865444

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.64  E-value=0.00042  Score=64.40  Aligned_cols=135  Identities=15%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcC-C------cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCC
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPN-L------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  348 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~-V------~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pp  348 (663)
                      .|..++.|+||++.||+++||  .+.+|++. .      ..+++- +.|+.. . ..+-++..+.  .. .++++  .++
T Consensus         5 ~i~~~r~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d-r~GG~~-~-~~~~~G~~~~--~g-~v~ev--~pp   74 (155)
T 1zxf_A            5 FVRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD-KKGGRW-Y-EIDEQGEEHT--FG-LIRKV--DEP   74 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE-TTTTEE-E-CCCTTTSCCC--CE-EEEEE--ETT
T ss_pred             eEEEEEEEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE-CCCCEE-E-EECCCCCeEe--EE-EEEEE--CCC
Confidence            378889999999999999999  48888742 1      234555 666654 2 2222221111  11 23333  488


Q ss_pred             CeEEEEEEe-cCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch--HHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          349 QEISFEQVE-GDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS--EAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       349 rrIsfr~Ve-GdF-----r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP--~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      ++|.|.-.. ++.     ....-+|+|++.++|+|+|+.....-.   ..-+  ...+...+..+-...|..|++.+++.
T Consensus        75 ~rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~---~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~~  151 (155)
T 1zxf_A           75 DTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFD---RMGTKHAKRVRNGMDKGWPTILQSFQDKIDEE  151 (155)
T ss_dssp             TEEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSST---TSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEeccc---ccccchhHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            999988432 211     235678999999877799988765211   1112  23445566678899999999999876


Q ss_pred             hCC
Q 006041          421 EGD  423 (663)
Q Consensus       421 ~a~  423 (663)
                      .+.
T Consensus       152 ~a~  154 (155)
T 1zxf_A          152 GAK  154 (155)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            553

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.62  E-value=0.00018  Score=78.73  Aligned_cols=105  Identities=14%  Similarity=0.197  Sum_probs=81.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC---EEEEEEEeccceeEEEEEEEEEEEEee-eCCCeE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICE-QHEQEI  351 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn---~vrv~q~g~~gll~~~~~~rvVLDV~E-~pprrI  351 (663)
                      .++.+.+|+||+++||+..+|.+++++|+|....++++...+.   +..++.  ..+  ++.|++++  +.++ .+++++
T Consensus         2 ~~~~~~~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~~~--~~~--~~~w~~~~--~~t~~~~~~~F   75 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTIFS--LPA--GLKWVARH--DLSGFLNGSRF   75 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEEEE--CST--TCEEEEEE--CGGGCBTTTEE
T ss_pred             eEEEEEEccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEEEe--cCC--CcEEEEEE--ccccccCCCeE
Confidence            4678899999999999999999999999999999999864332   122222  211  25566652  1144 467999


Q ss_pred             EEEEEecC---CceeEEEEEEEEcCCCeEEEEEEEEEEe
Q 006041          352 SFEQVEGD---FDSFQGKWLFEQLGSHHTLLKYSVESKM  387 (663)
Q Consensus       352 sfr~VeGd---Fr~f~G~WtLeplgdGgTrVtYtve~eP  387 (663)
                      .++++.|+   |+.+.-++.|++.++ +|+++..+++..
T Consensus        76 ~d~~~~gp~~~~~~w~h~h~f~~~~~-gt~~~d~~~~~~  113 (516)
T 3oh8_A           76 TDVCLTAPVKALANWRHVHNFVDQDG-GTLITDSVSTRL  113 (516)
T ss_dssp             EEECCSCSSGGGSSCEEEEEEEEETT-EEEEEEEEECSS
T ss_pred             EEEeccCcccceeeeEEEEEEEEcCC-CcEEEEEEEeeC
Confidence            99999999   889999999999876 699999999875

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=97.56  E-value=0.00023  Score=66.99  Aligned_cols=132  Identities=14%  Similarity=0.099  Sum_probs=81.8

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      .+.+..++.|+||+++||++++|-+.+..|++. ..+++--+.|+...+.    .+.    +... ++++  .++++|.|
T Consensus        18 ~~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~g-~~~~~d~~~GG~~~~~----~G~----~~g~-v~ev--~p~~rlv~   85 (158)
T 3ni8_A           18 GMSFEITEEYYVPPEVLFNAFTDAYTLTRLSRG-SLAEVDLKVGGKFSLF----SGS----ILGE-FTEI--TKPHKIVE   85 (158)
T ss_dssp             CCCEEEEEEESSCHHHHHHHHHCHHHHHHHTTT-SCCEECCSTTCEEEET----TTT----EEEE-EEEE--ETTTEEEE
T ss_pred             CceEEEEEEECCCHHHHHHHhcCHHHHHhhcCC-CccEEEccCCCEEEEe----cCC----EEEE-EEEE--eCCcEEEE
Confidence            345888999999999999999999999999983 2233334455554332    121    1222 2233  47899987


Q ss_pred             EEEecCCc---eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 006041          354 EQVEGDFD---SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE  418 (663)
Q Consensus       354 r~VeGdFr---~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~-~L~ALR~RAE  418 (663)
                      ...-.+..   ...-+|+|++.++++|+|+++..--|........ ........+-.. +|..|++.++
T Consensus        86 tw~~~~~~~~~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~-~~~~~~~~GW~~~~L~~Lk~~Le  153 (158)
T 3ni8_A           86 KWKFRDWNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEG-GVLERCKNGWTQNFLHNIEVILG  153 (158)
T ss_dssp             EEEETTSCSSCCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCCC-CHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             EEEecCCCCCCcEEEEEEEEecCCCCEEEEEEEEccCchhhhccc-hhHHHHHhChhHHHHHHHHHHhC
Confidence            65432221   3577899999655689999977633321100100 012345567777 5888887755

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=97.46  E-value=0.00032  Score=66.40  Aligned_cols=88  Identities=15%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +|..++.|+||++.||++|+|++++ ++.|.+.+                                              
T Consensus         3 ~v~~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~gg~v~Erl~~~D~~~~~~sY~ii~g~l   81 (160)
T 3p51_A            3 KVYNSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLLNGEFLDTLIAYSEIERRIMYSMDEGPS   81 (160)
T ss_dssp             EEEEEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEETTTEEEEEEEEETTTTEEEEEEEECST
T ss_pred             EEEEEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEECCEEEEEEEEEcCCCcEEEEEEecCCC
Confidence            5899999999999999999999999 99997654                                              


Q ss_pred             -------------------c-CCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhccccccccccccc
Q 006041          129 -------------------R-SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNS  187 (663)
Q Consensus       129 -------------------~-~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~~~~~~~~~~~~  187 (663)
                                         . ++||.++|+.++.|.-    .+....++.-...+|.+|++++|+.-.+..++.++|.|
T Consensus        82 ~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~----~~~~~~~~~~~~~~L~~Lk~~~e~~~~~~~~~~~~~~~  156 (160)
T 3p51_A           82 PVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS----TEAVEYMNTVYRSLLADLAAEFTSESRRSEWIDQLEHH  156 (160)
T ss_dssp             TSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC----SHHHHHHHHHHHHHHHHHHHHSCTTTCC----------
T ss_pred             cccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH----HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHhhhc
Confidence                               1 3678899999888863    27788889999999999999999876666667666654

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.44  E-value=0.001  Score=64.06  Aligned_cols=95  Identities=7%  Similarity=-0.012  Sum_probs=82.0

Q ss_pred             CCceEEEEEEccC-CcceEEEEEEEc-cCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041           79 QRKVHCEVEVVSW-RERRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLAC----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~-~~rrV~a~i~i~-ap~e~VW~vLTDYe~la~fiP~l~~----------------------------  128 (663)
                      .++|.|-....+. +...+.+...|+ ++++.|+++|.|.+...++.|++.+                            
T Consensus        36 ~~~v~v~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~~~i~~~~~~~p~p~~~RD~v  115 (214)
T 1ln1_A           36 TSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYV  115 (214)
T ss_dssp             ETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETTEEEEEEEECCCTTSCCEEEE
T ss_pred             CCCeEEEEeccCCCCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCCCEEEEEEEEcCCCCCCceEE
Confidence            3457777665543 346689999995 9999999999999999988888766                            


Q ss_pred             -------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041          129 -------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSD  159 (663)
Q Consensus       129 -------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~d  159 (663)
                                                                       .+++|.++|.+.+.|+.++|..++...+.+.
T Consensus       116 ~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~iP~~l~n~~~~~~  195 (214)
T 1ln1_A          116 YLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNG  195 (214)
T ss_dssp             EEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSCCCHHHHHHHHHTH
T ss_pred             EEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCcccHHHHHHHHHHH
Confidence                                                             2467999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHH
Q 006041          160 LPVNLQALACRAER  173 (663)
Q Consensus       160 Lp~nL~Ai~~~Ae~  173 (663)
                      ++..|+.|++++++
T Consensus       196 ~~~~l~~l~k~~~~  209 (214)
T 1ln1_A          196 VPNFLKDMARACQN  209 (214)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999999974

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=97.26  E-value=0.0016  Score=63.63  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=81.8

Q ss_pred             CCceEEEEEEccCCcceEEEEEEEccCHHHHHHHh-hCchhhhhcccccee-----------------------------
Q 006041           79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNAL-TDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vL-TDYe~la~fiP~l~~-----------------------------  128 (663)
                      .++|.|-....+..-.-+.+...|++|++.||++| .|.+...+..+++.+                             
T Consensus        40 ~~gv~vy~~~~~~~g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~R  119 (221)
T 3p0l_A           40 DNGDKVMSKVVPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVGPR  119 (221)
T ss_dssp             TTSCEEEEEECSSSCEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSEEEEEEEECC---CCSCCE
T ss_pred             CCCcEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEecCCCeEEEEEeeccccCCccCCc
Confidence            45677777777654466899999999999999998 699999999888887                             


Q ss_pred             -----------------------------------------------cC-C--ceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041          129 -----------------------------------------------RS-S--TTTLSYEVNVIPRLNFPAIFLERIIRS  158 (663)
Q Consensus       129 -----------------------------------------------~~-~--gT~LtY~v~V~P~f~vP~~lie~~lr~  158 (663)
                                                                     .+ +  +|.++|.+++.|+.++|..++.+.+.+
T Consensus       120 Dfv~~r~~~~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~  199 (221)
T 3p0l_A          120 DFVSVRCAKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLSQ  199 (221)
T ss_dssp             EEEEEEEEEECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSSCCHHHHHHHHHH
T ss_pred             eEEEEEEEEEcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCCCCHHHHHHHHHH
Confidence                                                           12 3  699999999999999999999999999


Q ss_pred             chHHHHHHHHHHHH
Q 006041          159 DLPVNLQALACRAE  172 (663)
Q Consensus       159 dLp~nL~Ai~~~Ae  172 (663)
                      .++..|.+||++++
T Consensus       200 ~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          200 TQVDFANHLRKRLE  213 (221)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999886

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=96.54  E-value=0.011  Score=52.08  Aligned_cols=31  Identities=23%  Similarity=0.552  Sum_probs=28.6

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhcc
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFV  123 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fi  123 (663)
                      ...|..++.|+||++.||++|||.++++++.
T Consensus         4 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~   34 (146)
T 2leq_A            4 KLIAQVKTVINAPIEKVWEALVNPEIIKEYM   34 (146)
T ss_dssp             CEEEEEEEEECSCHHHHHHHHSCTTHHHHHS
T ss_pred             CceEEEEEEECCCHHHHHHHHcCHHHhceeE
Confidence            4579999999999999999999999999985

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=96.53  E-value=0.026  Score=55.20  Aligned_cols=96  Identities=10%  Similarity=0.060  Sum_probs=78.1

Q ss_pred             CCceEEEEEEccC-CcceEEEEEEEccCHHHHHHHh--hCchhhhhcccccee---------------------------
Q 006041           79 QRKVHCEVEVVSW-RERRIKAEMLVNADVDSVWNAL--TDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~-~~rrV~a~i~i~ap~e~VW~vL--TDYe~la~fiP~l~~---------------------------  128 (663)
                      .++|.|-....+. .-..+.+...|+++++.|+++|  .|.+.-.+..+++.+                           
T Consensus        51 ~~gv~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~~~i~~~~~~~~~~~~v~  130 (231)
T 2r55_A           51 GNGVSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLIS  130 (231)
T ss_dssp             CSSEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTBC
T ss_pred             CCCEEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCCCEEEEEEEeccccCCccC
Confidence            4556666655532 3355888999999999999999  778877777777666                           


Q ss_pred             ---------------------------------------------------c--CCceEEEEEEEEecCCCCCHHHHHHH
Q 006041          129 ---------------------------------------------------R--SSTTTLSYEVNVIPRLNFPAIFLERI  155 (663)
Q Consensus       129 ---------------------------------------------------~--~~gT~LtY~v~V~P~f~vP~~lie~~  155 (663)
                                                                         .  +++|.++|.+.+.|+.++|..++...
T Consensus       131 ~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~  210 (231)
T 2r55_A          131 PRDFVDLVLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQNVVDSF  210 (231)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSCCHHHHHHH
T ss_pred             CCeEEEEEEEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCccHHHHHHH
Confidence                                                               1  35799999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHHh
Q 006041          156 IRSDLPVNLQALACRAERS  174 (663)
Q Consensus       156 lr~dLp~nL~Ai~~~Ae~~  174 (663)
                      +.+.++..+.+|++.+++.
T Consensus       211 ~~~~~~~~~~~Lr~~~~~~  229 (231)
T 2r55_A          211 FPRSMTRFYANLQKAVKQF  229 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHGG
T ss_pred             HhHhHHHHHHHHHHHHHHh
Confidence            9999999999999999864

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=96.53  E-value=0.019  Score=56.25  Aligned_cols=95  Identities=9%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             CceEEEEEEccCCcceEEEEEEEccCHHHHH-HHhhCchhhhhcccccee------------------------------
Q 006041           80 RKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLAC------------------------------  128 (663)
Q Consensus        80 ~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW-~vLTDYe~la~fiP~l~~------------------------------  128 (663)
                      +++.|-....+.......+...|+++++.|+ .++.|.+...+..+++.+                              
T Consensus        52 ~g~~vy~~~~~~~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RD  131 (229)
T 1em2_A           52 YGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRD  131 (229)
T ss_dssp             TCCEEEEEEETTTEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEE
T ss_pred             CCCEEEEEecCCCCceEEEEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEecCCCeEEEEEEecCcCCCCcCCCe
Confidence            4566655555532235677888899999999 899999999888888877                              


Q ss_pred             --------------------------------------------c-----CCceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041          129 --------------------------------------------R-----SSTTTLSYEVNVIPRLNFPAIFLERIIRSD  159 (663)
Q Consensus       129 --------------------------------------------~-----~~gT~LtY~v~V~P~f~vP~~lie~~lr~d  159 (663)
                                                                  +     +++|.++|.+.+.|+.++|..+++..+.+.
T Consensus       132 fv~~r~~~~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~l~n~~~~~~  211 (229)
T 1em2_A          132 FVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAAT  211 (229)
T ss_dssp             EEEEEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHHHH
T ss_pred             eEEEEEEEEcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence                                                        1     366999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHh
Q 006041          160 LPVNLQALACRAERS  174 (663)
Q Consensus       160 Lp~nL~Ai~~~Ae~~  174 (663)
                      ++..+..||+.+++.
T Consensus       212 ~~~~~~~Lr~~~~~~  226 (229)
T 1em2_A          212 MFEFAFHLRQRISEL  226 (229)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999865

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=96.49  E-value=0.02  Score=55.74  Aligned_cols=80  Identities=15%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      ......|+||+++||+++.|++++..+.|.+.+                                               
T Consensus        29 ~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~~~eG~~ggvGsvR~lt~~~G~p~~~vkErL~~~D~~~~~~sY~Iie  108 (183)
T 3rt2_A           29 STLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVG  108 (183)
T ss_dssp             EEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEESSSCCCTTCEEEEEECCSSTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEEeCCHHHHHHHHhCcCchhhcCccceEEEeeCCCCCCCcEEEEEeCCCCccceEEEEEEEEECCCCEEEEEEec
Confidence            334448999999999999999999999998766                                               


Q ss_pred             -----------------c-CC--ceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 006041          129 -----------------R-SS--TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF  175 (663)
Q Consensus       129 -----------------~-~~--gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~  175 (663)
                                       . .+  +|.+.++.++.|.-....--....+..=...||++|++.+|++-
T Consensus       109 g~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~~~~L~~L~~~~e~~~  175 (183)
T 3rt2_A          109 GDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQ  175 (183)
T ss_dssp             ESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                             1 23  59999999998766666666777778888899999999999863

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=96.34  E-value=0.013  Score=53.82  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhccccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPNL  126 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l  126 (663)
                      ....|..++.|+||++.||++|||-+++++++|..
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~   41 (160)
T 2lak_A            7 ESFVVRREAHLAAPPAAVFALMTDPEKILRWMGTE   41 (160)
T ss_dssp             SCCEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSS
T ss_pred             CCceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCc
Confidence            45679999999999999999999999999988764

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=96.30  E-value=0.016  Score=56.91  Aligned_cols=95  Identities=14%  Similarity=0.035  Sum_probs=76.9

Q ss_pred             CCceEEEEEEccC-CcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041           79 QRKVHCEVEVVSW-RERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~-~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------  128 (663)
                      .++|.|-...... .-....+...|++|++.|+++|.|-+.-.+..+++.+                             
T Consensus        51 ~~gv~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~~I~y~~~~~~~~~~v~~R  130 (224)
T 1jss_A           51 AKDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPR  130 (224)
T ss_dssp             ETTEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCE
T ss_pred             CCCEEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcCCCeEEEEEEcccccCCCCCCC
Confidence            4678777764433 3355789999999999999999996655666666665                             


Q ss_pred             ---------------------------------------------cC---CceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041          129 ---------------------------------------------RS---STTTLSYEVNVIPRLNFPAIFLERIIRSDL  160 (663)
Q Consensus       129 ---------------------------------------------~~---~gT~LtY~v~V~P~f~vP~~lie~~lr~dL  160 (663)
                                                                   .+   +.|.++|.+++.|+.++|..++++.+.+-+
T Consensus       131 Dfv~~r~~~~~~~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~  210 (224)
T 1jss_A          131 EFVDFSYTVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTL  210 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEcCCeEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCccHHHHHHHHHHhH
Confidence                                                         11   369999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 006041          161 PVNLQALACRAER  173 (663)
Q Consensus       161 p~nL~Ai~~~Ae~  173 (663)
                      ..-+.+||+.+++
T Consensus       211 ~~~~~~Lr~~~~~  223 (224)
T 1jss_A          211 ANFYSDLRKGLRK  223 (224)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=96.29  E-value=0.029  Score=55.73  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=63.3

Q ss_pred             CcceEEEEE--EEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------
Q 006041           92 RERRIKAEM--LVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------  128 (663)
Q Consensus        92 ~~rrV~a~i--~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------  128 (663)
                      ....+...|  .|+||+++||+++.|++++..+.|.+.+                                         
T Consensus        48 ~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~eveGdg~vGsVR~vt~~~G~p~~~vkErL~~lDde~~~~s  127 (205)
T 3oqu_A           48 RENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILG  127 (205)
T ss_dssp             CTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCSSCCTTCEEEEEECTTSSCSEEEEEEEEEETTTTEEE
T ss_pred             CCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEeeCCCCCCcEEEEEEcCCCccceEEEEEEEEECCCCEEE
Confidence            345699999  9999999999999999999999998776                                         


Q ss_pred             ---------------------cC--C--ceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ---------------------RS--S--TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ---------------------~~--~--gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                           .+  +  +|.+.+...+.|.-....--....+..=...||++|++.+|++
T Consensus       128 YsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~t~e~~~~~v~~v~~~gL~~L~~~~e~~  198 (205)
T 3oqu_A          128 IKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSERL  198 (205)
T ss_dssp             EEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                 11  1  3555555555554444444566677777889999999999986

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=96.18  E-value=0.042  Score=54.69  Aligned_cols=98  Identities=16%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             CCceEEEEEEccCCc---ceEEEEEEEc-cCHHHHHHHhhCchhhhhcccccee--------------------------
Q 006041           79 QRKVHCEVEVVSWRE---RRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLAC--------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~~---rrV~a~i~i~-ap~e~VW~vLTDYe~la~fiP~l~~--------------------------  128 (663)
                      .++|.|-....+...   +.+.+...+. ++++.|+++|.|.+...+..|++.+                          
T Consensus        55 ~~gv~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~i~~~~~i~y~~~~~p~p~s~  134 (255)
T 2e3n_A           55 EGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQ  134 (255)
T ss_dssp             ETTEEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEEETTEEEEEEEECCCTTSCC
T ss_pred             CCCEEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhhcceeEEEEEcCCCCEEEEEEeecCCCcCC
Confidence            456777666544333   2467766665 9999999999999999888888776                          


Q ss_pred             --------------------------------------------c---------------C--------CceEEEEEEEE
Q 006041          129 --------------------------------------------R---------------S--------STTTLSYEVNV  141 (663)
Q Consensus       129 --------------------------------------------~---------------~--------~gT~LtY~v~V  141 (663)
                                                                  .               +        ++|.++|.+.+
T Consensus       135 RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~  214 (255)
T 2e3n_A          135 RDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANV  214 (255)
T ss_dssp             EEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEE
T ss_pred             ceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEe
Confidence                                                        1               1        36899999999


Q ss_pred             ecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcc
Q 006041          142 IPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG  176 (663)
Q Consensus       142 ~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~  176 (663)
                      .|+.++|..++...+.+.+|..|+.|++++++.++
T Consensus       215 Dp~G~iP~~lvn~~~~~~~~~~l~~L~k~v~~~~~  249 (255)
T 2e3n_A          215 NPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTA  249 (255)
T ss_dssp             ECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCccCHHHHHHHHhccccHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999987644

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=95.89  E-value=0.026  Score=50.59  Aligned_cols=79  Identities=16%  Similarity=0.197  Sum_probs=57.4

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee--------------------------------------------
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC--------------------------------------------  128 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~--------------------------------------------  128 (663)
                      ...|..++.|+||++.||++|||.+++++++|.+..                                            
T Consensus         7 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~~~~~~G~~~~~~~~~g~~~~~v~e~~p~~~l~~~~~~~~~~~~~~   86 (143)
T 1xn6_A            7 LNDIKQTIVFNASIQKVWSVVSTAEGIASWFMPNDFVLEVGHEFHVQSPFGPSPCKVLEIDEPNHLSFSWDTDGWVVSFD   86 (143)
T ss_dssp             CCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBCCCCCTTCEECBCCTTCCCCEEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEEEcCCHHHHHHHHhCHhHHHHhcCCCCcCcCCCCEEEEEEcCCCceEEEEEEeCCCEEEEEEeCCCEEEEEE
Confidence            456999999999999999999999999998885321                                            


Q ss_pred             ---cCC-ceEEEEEEEEecCC--CCCH------HHHHHHHhhchHHHH-HHHHHHHH
Q 006041          129 ---RSS-TTTLSYEVNVIPRL--NFPA------IFLERIIRSDLPVNL-QALACRAE  172 (663)
Q Consensus       129 ---~~~-gT~LtY~v~V~P~f--~vP~------~lie~~lr~dLp~nL-~Ai~~~Ae  172 (663)
                         .++ +|+|+|+....+..  ..|.      ... ..+..--...| ..|++.+|
T Consensus        87 l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gw~~~l~~~L~~~le  142 (143)
T 1xn6_A           87 LKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIR-DRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             EEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHH-HHHHHHHHHHHTTHHHHHHH
T ss_pred             EEECCCCcEEEEEEEEccCccccccccccchhhHHH-HHHHHhHHHHHHHHHHHHhc
Confidence               124 78888887766644  2232      233 35666777777 77777665

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=95.39  E-value=0.076  Score=47.29  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=53.4

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccc-cee---------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPN-LAC---------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~-l~~---------------------------------------------  128 (663)
                      +|..++.|+||++.||++|||-++++++.+. ...                                             
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~v~~~~p~~~l~~~~~~g~~~~~l   81 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQF   81 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHHHCTTTGGGTSSSEESSCCCTTCEEEEECGGGTC-CEEEEEEEETTTEEEEEETTEEEEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHcCHHHhcccCCCCCcccccCCCEEEEEEcCcCceEEEEEEEEcCCCEEEEEEcCCeEEEEE
Confidence            4788999999999999999999999997543 211                                             


Q ss_pred             --cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 --RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 --~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                        .+++|+|+++-.-.|...  ... -..+..--...|..|++.+|.
T Consensus        82 ~~~~~gT~l~~~~~~~~~~~--~~~-~~~~~~GW~~~l~~L~~~le~  125 (135)
T 3q6a_A           82 EESEAGTVVTTTEKDFDTQD--VKQ-LLGQKEGWVYMLSCLKVYLEH  125 (135)
T ss_dssp             EEETTEEEEEEEECCCCSSC--HHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCEEEEEEEcCCCcch--HHH-HhhchhCHHHHHHHHHHHHhc
Confidence              236677777655433322  111 134666777888888888886

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=95.17  E-value=0.12  Score=48.54  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=30.1

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      +.+.|..++.|+||++.||++|||-++|+++++
T Consensus        20 ~~~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~   52 (178)
T 1xuv_A           20 GKQEIIITREFDAPRELVFKAFTDPDLYTQWIG   52 (178)
T ss_dssp             TCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCS
T ss_pred             CCcEEEEEEEECCCHHHHHHHhCCHHHHHhCCC
Confidence            556799999999999999999999999999975

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=95.10  E-value=0.11  Score=51.63  Aligned_cols=33  Identities=12%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      ......|+||+++||+++.|++++..+.|.+.+
T Consensus        56 ~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s   88 (208)
T 3jrs_A           56 SLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKS   88 (208)
T ss_dssp             EEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEE
T ss_pred             EEEEEEEeCCHHHHHHHHhCcCChhHccccceE
Confidence            344458999999999999999999999998876

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=94.89  E-value=0.18  Score=49.27  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=64.5

Q ss_pred             cceEEEEE--EEccCHHHHHHHhhCchhhhhcccccee------------------------------------------
Q 006041           93 ERRIKAEM--LVNADVDSVWNALTDYERLADFVPNLAC------------------------------------------  128 (663)
Q Consensus        93 ~rrV~a~i--~i~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------------------  128 (663)
                      .++....+  .|+||++.||+++.|++++..+.|.+.+                                          
T Consensus        32 ~~~~~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGsVR~~t~~~G~p~~~vkErL~~iD~~~~~~s  111 (190)
T 3kl1_A           32 PTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLS  111 (190)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEEEEECSSSSCEEEEEEEEEEETTTTEEE
T ss_pred             CCceeEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEE
Confidence            34444444  8999999999999999998777777766                                          


Q ss_pred             ----------------------c-----CCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ----------------------R-----SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ----------------------~-----~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                            .     +++|.+.|+.++.|.-..-.--....+..=...+|.+|++.+|+.
T Consensus       112 Y~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~~~e~~~~~~~~~~~~gL~~L~~~~e~~  184 (190)
T 3kl1_A          112 FRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA  184 (190)
T ss_dssp             EEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                  1     246899999999976665555556667777789999999999985

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.08  E-value=0.87  Score=42.17  Aligned_cols=122  Identities=10%  Similarity=0.101  Sum_probs=70.4

Q ss_pred             EEEEEEEEcCCH-HHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          276 CVVASITVKAPV-SEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       276 ~VrasIvI~APp-eqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      +|..++.|+||+ +.||++|++.+.+.+|+..-.  .   ..|+...+..-+. +    ...++ ++++  .++++|+|+
T Consensus         5 ~i~~e~~i~A~~~~~VW~~IStPegL~~Wfad~v--~---~~g~~~~F~w~~~-~----~~~~~-v~~~--~~~~~i~Fr   71 (136)
T 2lio_A            5 KIHLEYLLNATSKNILWSAISTPTGLEDWFADKV--V---SDDKTVTFCWGKT-E----QRQAG-IVAI--RAYSFIRFH   71 (136)
T ss_dssp             EEEEEEEECTTSCTHHHHGGGSHHHHTTTSSSEE--E---EETTEEEEESSSS-S----EEEEE-EEEE--ETTTEEEEE
T ss_pred             cEEEEEEecCChHHHHHHHhCChhhhhcccCCCC--c---ccCceEEEEeCCC-C----cEeEE-EEEE--cCCCEEEEE
Confidence            588899999999 999999999999999997632  1   2444434322111 1    12232 2222  478999999


Q ss_pred             EEecCCceeEEEEEEEEcC-CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          355 QVEGDFDSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       355 ~VeGdFr~f~G~WtLeplg-dGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      -..-.-....-..+++..+ .++|.|+.+ .|.      -+.. .+. ....=...|..||+.++.
T Consensus        72 W~~~~~~~~~~e~~l~~~~~t~~~~L~vt-dFa------~~~~-~e~-~~~gW~~~l~~Lk~~lg~  128 (136)
T 2lio_A           72 WLDDENERDYFEIKMSYNELTGDYVLEIT-DFS------EADE-ADD-LKELWDSQVSKLRRTCGF  128 (136)
T ss_dssp             ESSSSSSSCEEEEEEEECTTTSCEEEEEE-EEE------CHHH-HHH-HHHHHHHHHHHHHHHTSC
T ss_pred             ccCCCCCceEEEEEEEecCCCCcEEEEEe-cCC------Cccc-hhH-HHhhHHHHHHHHHHHhhh
Confidence            7652211222233444432 135777666 332      1122 222 445555667777776544

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=93.77  E-value=0.39  Score=44.19  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      .+.|..++.|+||++.||++|||-++++++++
T Consensus        13 ~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~   44 (171)
T 2il5_A           13 HVEVEIEKLYKFSPELVYEAWTKKDLLKQWFM   44 (171)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCHHHHTTTSS
T ss_pred             CceEEEEEEeCCCHHHHHHHHCCHHHHHhccC
Confidence            35699999999999999999999888888874

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=92.87  E-value=0.23  Score=49.40  Aligned_cols=92  Identities=11%  Similarity=0.038  Sum_probs=74.4

Q ss_pred             CCceEEEEEEccCCc--ceEEEEEEEccCHHHHH-HHhhCchhhhhcccccee---------------------------
Q 006041           79 QRKVHCEVEVVSWRE--RRIKAEMLVNADVDSVW-NALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~~--rrV~a~i~i~ap~e~VW-~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      .++|.|-..+.+.+.  .-+.+...|+++++.++ .+|.|.   .+..|++.+                           
T Consensus        58 ~~gi~V~~k~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr---~~Wd~~~~~~~vle~id~~~~I~y~~~~~p~p~~~R  134 (237)
T 2pso_A           58 TDNTDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRER---HLWDEDFVQWKVVETLDRQTEIYQYVLNSMAPHPSR  134 (237)
T ss_dssp             SSSCEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHCG---GGTCTTBCCCEEEEEEETTEEEEEEEECCSSSCCCE
T ss_pred             CCCeEEEEEEcCCCCCcEEEEEEEEEcCChHHHHHHHHhhh---hhHHhhhceEEEEEEcCCCcEEEEEEecCCCCcCCe
Confidence            567888888774443  55899999999998876 588884   455555554                           


Q ss_pred             -------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041          129 -------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSD  159 (663)
Q Consensus       129 -------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~d  159 (663)
                                                                       .+++|.++|.+.+.|+.++|..+ ...+.+.
T Consensus       135 Dfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G~iP~~l-n~~~~~~  213 (237)
T 2pso_A          135 DFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHSPEWY-SKGFGHL  213 (237)
T ss_dssp             EEEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSCTTTT-TTHHHHH
T ss_pred             EEEEEEEEEEECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCCCchHHH-HHHHHHH
Confidence                                                             24779999999999999999999 9999999


Q ss_pred             hHHHHHHHHHHHHHh
Q 006041          160 LPVNLQALACRAERS  174 (663)
Q Consensus       160 Lp~nL~Ai~~~Ae~~  174 (663)
                      ++..|..||+.++..
T Consensus       214 ~~~~l~~LR~~~~~~  228 (237)
T 2pso_A          214 CAAEVARIRNSFQPL  228 (237)
T ss_dssp             HHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988654

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=92.81  E-value=0.75  Score=42.95  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             cceEEEEEEEccCHHHHHHHhh-Cchh-hhhccccc
Q 006041           93 ERRIKAEMLVNADVDSVWNALT-DYER-LADFVPNL  126 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLT-DYe~-la~fiP~l  126 (663)
                      ...+..++.|++|++.||+++. |+++ +++++|..
T Consensus         2 ~~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~   37 (159)
T 1e09_A            2 VFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQA   37 (159)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTT
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCccccchhhChhh
Confidence            3468899999999999999998 9996 59999954

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=92.74  E-value=0.18  Score=48.20  Aligned_cols=42  Identities=19%  Similarity=0.403  Sum_probs=35.4

Q ss_pred             EEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           86 VEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        86 ~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      +.+...+ ..|..++.|+||++.||++|||-+++++.+|....
T Consensus        29 ~~~~~~~-~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~   70 (184)
T 2nn5_A           29 FRLENQT-IYFGTERAISASPQTIWRYLTETDKLKQWFPELEI   70 (184)
T ss_dssp             EEEETTE-EEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEE
T ss_pred             hhcCCCC-cEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCccc
Confidence            3444444 67999999999999999999999999999997765

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=92.65  E-value=0.078  Score=48.03  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=30.8

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhccccc
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNL  126 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l  126 (663)
                      ...|..++.|+||++.||++|||.+++++.+|..
T Consensus         4 ~~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~   37 (146)
T 1xn5_A            4 LPDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEN   37 (146)
T ss_dssp             CCCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCB
T ss_pred             CcEEEEEEEEcCCHHHHHHHHhChhHHHHhcCCC
Confidence            4569999999999999999999999999988764

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=92.05  E-value=0.093  Score=47.93  Aligned_cols=34  Identities=18%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      ....|..++.|+||++.||++|||.+++++.++.
T Consensus         8 ~~~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~   41 (152)
T 2kew_A            8 ALPDITKSITLEAPIQKVWETVSTSEGIAKWFMP   41 (152)
T ss_dssp             SSCCEEEEEEECSCHHHHHHHSSSSHHHHHHHCS
T ss_pred             cccEEEEEEEECCCHHHHHHHHhCHHHHHHhcCC
Confidence            3457999999999999999999999999998776

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=91.96  E-value=0.39  Score=47.87  Aligned_cols=33  Identities=9%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      ......|+||+++||+++.|++++..+.|.+.+
T Consensus        52 ~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s   84 (211)
T 3k3k_A           52 SLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKS   84 (211)
T ss_dssp             EEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEE
T ss_pred             EEEEEEEcCCHHHHHHHHhCcCChhHcCccceE
Confidence            344458999999999999999999999998876

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=91.84  E-value=0.58  Score=43.54  Aligned_cols=35  Identities=14%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             ceEEEEEEEccCHHHHHHHhh-Cchhh-hhcccccee
Q 006041           94 RRIKAEMLVNADVDSVWNALT-DYERL-ADFVPNLAC  128 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLT-DYe~l-a~fiP~l~~  128 (663)
                      ..+...+.|++|++.||+++. |++++ ++++|.+.+
T Consensus         3 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s   39 (155)
T 1icx_A            3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQS   39 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEE
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCcchhcchhhhhccE
Confidence            457889999999999999999 99965 888877666

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=91.81  E-value=0.11  Score=47.59  Aligned_cols=34  Identities=18%  Similarity=0.409  Sum_probs=30.1

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      ..+.|..++.|+||++.||++|||-++++++.|.
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~   40 (151)
T 3q63_A            7 ENRTVVVERQISHPPEKLWRALTQPHLIEEWLMK   40 (151)
T ss_dssp             --CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCE
T ss_pred             CCCeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCc
Confidence            4567999999999999999999999999999884

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=91.43  E-value=0.12  Score=46.94  Aligned_cols=31  Identities=19%  Similarity=0.456  Sum_probs=28.6

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhc-cc
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADF-VP  124 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~f-iP  124 (663)
                      +.|..++.|+||++.||++|||-++++++ ++
T Consensus         2 ~~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~   33 (144)
T 2l8o_A            2 NKITVEVTVYAAIEKVWKYWNEPAHIMKWCQA   33 (144)
T ss_dssp             CSEEEEEEECSCHHHHHHHHHCHHHHHHHSTT
T ss_pred             cEEEEEEEECCCHHHHHHHHCCHHHHhhccCC
Confidence            45889999999999999999999999999 65

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=91.06  E-value=0.2  Score=46.58  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             cCCcceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           90 SWRERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        90 ~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      ..+.+.|..++.|+||++.||++|||-++++++.+
T Consensus         9 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~   43 (164)
T 3pu2_A            9 PGSATRLEFRRHFAATPEQLWAALTSPALLPAWLF   43 (164)
T ss_dssp             CCBTTEEEEEEEESSCHHHHHHHHHCTTTGGGTSC
T ss_pred             CCCCceEEEEEEECCCHHHHHHHhcCHHHHhhEeC
Confidence            45667899999999999999999999999999987

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=90.73  E-value=0.64  Score=47.30  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=68.9

Q ss_pred             CCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee------------------------------
Q 006041           79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC------------------------------  128 (663)
Q Consensus        79 ~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------  128 (663)
                      .++|.|-.... .+.-.+.+...|++|++.||++|.|-+...+..+++.+                              
T Consensus        74 ~~gv~Vy~~~~-~~~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~~ivY~~~~p~~~~~v~~RDF  152 (258)
T 3fo5_A           74 ISQVRLYTLED-DKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYHVTSPALGGHTKPQDF  152 (258)
T ss_dssp             ETTEEEEEEEC-SSCEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETTEEEEEEEECCCTTCSSCEEE
T ss_pred             CCCeEEEEEEC-CCceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCCeEEEEEecCCccCCCCCCEE
Confidence            34666655433 33456889999999999999999999999999888877                              


Q ss_pred             -------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHH-hh
Q 006041          129 -------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERII-RS  158 (663)
Q Consensus       129 -------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~l-r~  158 (663)
                                                                       .+++|.|+|-.++.|+. +|.++.+.+- .+
T Consensus       153 V~lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG~-lP~~~~n~~g~s~  231 (258)
T 3fo5_A          153 VILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPGV-LNYVTTNVAGLSS  231 (258)
T ss_dssp             EEEEEEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGGG-HHHHHHHHHTSCC
T ss_pred             EEEEEEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCCC-CCceEEeccccch
Confidence                                                             24779999999999976 9999888643 33


Q ss_pred             chHHHHHHHHHHHHH
Q 006041          159 DLPVNLQALACRAER  173 (663)
Q Consensus       159 dLp~nL~Ai~~~Ae~  173 (663)
                      .+=..+.++++..+.
T Consensus       232 ~~~~t~~~~~~fl~~  246 (258)
T 3fo5_A          232 EFYTTFKACEQFLLD  246 (258)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            333445555555554

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=90.50  E-value=0.16  Score=44.84  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=28.9

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      +.|..++.|+||++.||++|||-+++++.++.
T Consensus         3 ~~~~~~~~i~ap~e~Vw~altd~~~~~~W~~~   34 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAFLDPLALAKWLPP   34 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTCHHHHHHHSSC
T ss_pred             cEEEEEEEeCCCHHHHHHHhCCHHHHhhccCC
Confidence            45788899999999999999999999998864

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=90.46  E-value=12  Score=35.56  Aligned_cols=125  Identities=10%  Similarity=0.128  Sum_probs=75.8

Q ss_pred             CHHHHHHHHh-ccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEe-cCCcee
Q 006041          286 PVSEVWNVMT-AYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDSF  363 (663)
Q Consensus       286 PpeqVWaVLT-DyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~Ve-GdFr~f  363 (663)
                      +.+|||+=|. -.++=-.|+|.+.+|+|+++.++.+ .+...+.+.   ..+.+    ++..++.++.|.+.. |....-
T Consensus        21 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~~~~~-~R~l~fg~~---~i~e~----vtl~~~~~v~f~~~~t~~~~gs   92 (157)
T 2ffs_A           21 DRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRL-HRRLYLPGL---VVEDE----VVLKAPDSAHYSIKPSAEVAGG   92 (157)
T ss_dssp             CHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEE-EEEEEETTE---EEEEE----EEEETTTEEEEEECCCSSSBEE
T ss_pred             CHHHHHHHHHHHhcChhhcccccCeEEEEecCCCeE-EEEEEECCC---ccceE----EEEcCCcEEEEEcccccCCCCc
Confidence            4589998665 4556667999999999999876643 222223332   23344    334588999999866 222222


Q ss_pred             EEEEEEEEcCCCeEEEEEEEEEEeccC----ccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          364 QGKWLFEQLGSHHTLLKYSVESKMQKN----SLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       364 ~G~WtLeplgdGgTrVtYtve~eP~~g----g~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .-.=+++...+|.=-|+|..+......    -.+ .....++.+.....+++.||+.+..
T Consensus        93 ~ltn~Iee~~~g~L~lrF~ye~~~p~~s~e~~~~-~~~~~~ay~~ad~~Tv~~iRel~~~  151 (157)
T 2ffs_A           93 SLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPY-DAFVKQAYIAMDVETIATIRDRFGA  151 (157)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECSCC--CCCCC-BHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             eEEEEEeeCCCCcEEEEEEEEccCCCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            223355554455455566555443210    011 1356777888888999999998754

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=89.99  E-value=0.21  Score=45.18  Aligned_cols=30  Identities=23%  Similarity=0.530  Sum_probs=27.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhc-cc
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADF-VP  124 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~f-iP  124 (663)
                      .|..++.|+||++.||++|||-++++++ ++
T Consensus         2 ~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~   32 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAWNDPDCIARWNAA   32 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHTTSSSC
T ss_pred             EEEEEEEeCCCHHHHHHHhCCHHHHhccCCC
Confidence            4788999999999999999999999998 65

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=89.96  E-value=0.2  Score=44.92  Aligned_cols=30  Identities=33%  Similarity=0.500  Sum_probs=27.4

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhc-cc
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADF-VP  124 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~f-iP  124 (663)
                      .|..++.|+||++.||++|||-+++++. ++
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~   32 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYTTPEDIKQWNAA   32 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHHHHHHCCS
T ss_pred             eEEEEEEeCCCHHHHHHHhCCHHHHhcCCCC
Confidence            4778999999999999999999999998 65

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=89.83  E-value=0.23  Score=46.45  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      ..+.|..++.|+||++.||++|||-++++++++
T Consensus        14 ~~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~   46 (175)
T 2lf2_A           14 ENKTITIKREFAAVRAIVWEAFTRAEILDQWWA   46 (175)
T ss_dssp             TTTEEEEEEEESSCHHHHHHHHTCHHHHHHSSS
T ss_pred             CCceEEEEEEEcCCHHHHHHHhCCHHHHhhCcC
Confidence            467899999999999999999999999999975

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=89.55  E-value=0.25  Score=46.02  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      ..+.|..++.|+||++.||++|||-+++++.++.
T Consensus         8 ~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p   41 (178)
T 1xfs_A            8 AELDLMLKRELAVPVNLVWRGLTEPELLKKWFVP   41 (178)
T ss_dssp             TTTEEEEEEEESSCHHHHHHHHHCHHHHTTTSSC
T ss_pred             CCceEEEEEEecCCHHHHHHHhCCHHHHhhCCCC
Confidence            3466889999999999999999999999999753

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=89.20  E-value=0.54  Score=43.97  Aligned_cols=34  Identities=9%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             eEEEEEEEccCHHHHHHH-hhCchhh-hhcccccee
Q 006041           95 RIKAEMLVNADVDSVWNA-LTDYERL-ADFVPNLAC  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~v-LTDYe~l-a~fiP~l~~  128 (663)
                      .+..++.|++|++.||++ +.|+++| ++++|.+.+
T Consensus         4 ~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~   39 (155)
T 2flh_A            4 EFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVK   39 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcccccccchhccccce
Confidence            578899999999999999 7999999 999997754

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=88.89  E-value=0.3  Score=45.11  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=29.8

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      ..+.|..++.|+||++.||++|||-++++++.+
T Consensus        10 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~   42 (172)
T 2ldk_A           10 EALSFSIVAEFDADVKRVWAIWEDPRQLERWWG   42 (172)
T ss_dssp             TTTEEEEEEEESSCHHHHHHHHHCHHHHHTTSS
T ss_pred             CCceEEEEEEeCCCHHHHHHHhCCHHHHHhccC
Confidence            457799999999999999999999999998864

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=88.29  E-value=0.34  Score=43.59  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhccccce
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLA  127 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~  127 (663)
                      +.|..++.|+||++.||++|||=++++++.+...
T Consensus        11 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~   44 (145)
T 1x53_A           11 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPA   44 (145)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCC
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCc
Confidence            5689999999999999999999999999975443

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=88.18  E-value=0.25  Score=45.56  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      .+.|..++.|+||++.||++|||-++++++++
T Consensus         7 ~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~   38 (164)
T 2l9p_A            7 KNKIIFTRTFSAPINKVFDAYTKRELFEQWFH   38 (164)
T ss_dssp             SSEEEECCEESSCHHHHHHHHHCHHHHTTTCC
T ss_pred             CceEEEEEEeCCCHHHHHHHhCCHHHHHhccC
Confidence            46799999999999999999999999999975

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=87.70  E-value=1  Score=42.01  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             cceEEEEEEEccCHHHHHHHhh-Cchhh-hhcccccee
Q 006041           93 ERRIKAEMLVNADVDSVWNALT-DYERL-ADFVPNLAC  128 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLT-DYe~l-a~fiP~l~~  128 (663)
                      ...+...+.|++|++.||+++. |++++ ++++|.+++
T Consensus         2 ~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s   39 (157)
T 1tw0_A            2 VFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQS   39 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEE
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccE
Confidence            3467889999999999999998 99965 888888777

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=87.15  E-value=0.39  Score=44.79  Aligned_cols=35  Identities=14%  Similarity=0.135  Sum_probs=29.9

Q ss_pred             cCCcceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           90 SWRERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        90 ~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      ....+.|..+..|+||++.||++|||=++++++.+
T Consensus        15 ~~~~~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~   49 (158)
T 3ni8_A           15 YFQGMSFEITEEYYVPPEVLFNAFTDAYTLTRLSR   49 (158)
T ss_dssp             ---CCCEEEEEEESSCHHHHHHHHHCHHHHHHHTT
T ss_pred             CCCCceEEEEEEECCCHHHHHHHhcCHHHHHhhcC
Confidence            34456788999999999999999999999999997

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=86.95  E-value=0.38  Score=46.00  Aligned_cols=32  Identities=25%  Similarity=0.523  Sum_probs=29.9

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      +.|..++.|+||++.||++|||-+++++.++.
T Consensus        19 ~~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~   50 (191)
T 2k5g_A           19 QSIRFERLLPGPIERVWAWLADADKRARWLAG   50 (191)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCC
T ss_pred             CeEEEEEEeCCCHHHHHHHHcCHHHHhhcCCC
Confidence            56899999999999999999999999999876

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=86.36  E-value=0.49  Score=43.61  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=29.5

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      .+.|..+..|+||++.||++|||-+++++..+.
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~   40 (162)
T 3q64_A            8 HSTFIIERLYPAPPSKVFFALGNADAKRRWFTD   40 (162)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHSSC
T ss_pred             cceEEEEEEeCCCHHHHHHHHCCHHHHhhcCCC
Confidence            356888999999999999999999999999854

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=86.35  E-value=0.43  Score=43.27  Aligned_cols=30  Identities=10%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      .|..++.|+||++.||++|||-+++++..+
T Consensus         3 ~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~   32 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAWVSDGAKLLQWWG   32 (152)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHHHHHHCS
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHHHhhccC
Confidence            477889999999999999999999999876

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=86.24  E-value=0.49  Score=43.60  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.0

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPN  125 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~  125 (663)
                      +.|.....|+||++.||++|||-++++++.+.
T Consensus         8 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~   39 (161)
T 3rd6_A            8 STFTIERTYPQSPDRVFHAFADKATVRRWRVD   39 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHHHHHHTCC
T ss_pred             ceEEEEEEECCCHHHHHHHhcCHHHHhhccCC
Confidence            56888889999999999999999999999853

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=86.01  E-value=1.1  Score=41.77  Aligned_cols=35  Identities=14%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             ceEEEEEEEccCHHHHHHHhh-Cchhh-hhcccccee
Q 006041           94 RRIKAEMLVNADVDSVWNALT-DYERL-ADFVPNLAC  128 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLT-DYe~l-a~fiP~l~~  128 (663)
                      ..+...+.|++|++.||+++. |++++ ++++|.+++
T Consensus         4 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s   40 (158)
T 2qim_A            4 FTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQS   40 (158)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEE
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcE
Confidence            468889999999999999999 99975 888888777

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=83.64  E-value=2.2  Score=41.47  Aligned_cols=33  Identities=33%  Similarity=0.455  Sum_probs=28.6

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhccccc
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNL  126 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l  126 (663)
                      +.|...=.+++|++.||+.|||=++|++.++..
T Consensus        32 ~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~~   64 (192)
T 2luz_A           32 RSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP   64 (192)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHHHTTTSCCE
T ss_pred             eEEEEEEEeCCCHHHHHHHHcCHHHHheeeCCC
Confidence            447777788999999999999999999988654

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=82.65  E-value=0.77  Score=42.69  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      .+.|..+..|+||++.||++|||=++++++.+
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~   39 (166)
T 3put_A            8 HTTFVIERRLTAPVARVFRAWSTPESKRQWFA   39 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHHT
T ss_pred             cceEEEEEEECCCHHHHHHHhCCHHHHHhcCC
Confidence            35688999999999999999999999999984

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=82.10  E-value=0.92  Score=42.39  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             CCcceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           91 WRERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        91 ~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      .+.+.|..+..|+||++.||+++||=+++++..+
T Consensus        10 ~~~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~   43 (168)
T 3uid_A           10 LDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWG   43 (168)
T ss_dssp             TTTTEEEEEEEESSCHHHHHHHHHSHHHHHHHHC
T ss_pred             CCCCEEEEEEEEcCCHHHHHHHhCCHHHHhhEeC
Confidence            3456799999999999999999999999999754

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=81.42  E-value=1.4  Score=42.26  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             CcceEEEEEEEccCHHHHHHHhhCchhhhhccccc
Q 006041           92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPNL  126 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l  126 (663)
                      ..+.|..++.|++|++.||++|||=++++++++..
T Consensus        19 ~~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~   53 (181)
T 4fpw_A           19 EARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP   53 (181)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE
T ss_pred             CCceEEEEEEECCCHHHHHHHHcChHHHhhccCCC
Confidence            34679999999999999999999999999997653

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=80.72  E-value=2.3  Score=40.42  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=31.6

Q ss_pred             CcceEEEEEEEccCHHHHHHHh-hCchhh-hhcccccee
Q 006041           92 RERRIKAEMLVNADVDSVWNAL-TDYERL-ADFVPNLAC  128 (663)
Q Consensus        92 ~~rrV~a~i~i~ap~e~VW~vL-TDYe~l-a~fiP~l~~  128 (663)
                      +.-.+...+.|++|++.||+++ .|+++| ++.+|....
T Consensus         8 g~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~   46 (165)
T 3ie5_A            8 AAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFK   46 (165)
T ss_dssp             SCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEE
T ss_pred             eeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccc
Confidence            3456889999999999999995 899999 899997544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	663
d2d4ra1	146	d.129.3.6 (A:2-147) Hypothetical protein TTHA0849	2e-17
d2d4ra1	146	d.129.3.6 (A:2-147) Hypothetical protein TTHA0849	0.001
d2d4ra1	146	d.129.3.6 (A:2-147) Hypothetical protein TTHA0849	0.002
d2rera1	155	d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, c	2e-16
d2b79a1	137	d.129.3.9 (A:1-137) Hypothetical protein SMU440 {S	7e-07
d2pcsa1	147	d.129.3.10 (A:1-147) Hypothetical protein GKP20 {G	0.001
d2pcsa1	147	d.129.3.10 (A:1-147) Hypothetical protein GKP20 {G	0.002
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	0.002
d2qpva1	133	d.129.3.8 (A:1-133) Uncharacterized protein Atu153	0.002

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

 Score = 77.6 bits (190), Expect = 2e-17
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 336
           V A   + AP   V+ +    E L   +  +   ++++RE  + R           +   
Sbjct: 3   VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWL 62

Query: 337 ARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LS 394
                D          F   EGDFD ++G W+F   G   T +  ++  ++       L 
Sbjct: 63  EEEEWDDENLR---NRFFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLL 118

Query: 395 EAIMEEVIYEDLPSNLCAIRDYVEK 419
             ++++++ E++ S L  + + V  
Sbjct: 119 RKLVQKLMQENVESLLKGLEERVLA 143

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 95  RIKAEMLVNADVDSVWNALTDYERLADFVPNL 126
            ++AE  + A  + V+    D E L  ++  +
Sbjct: 2   EVRAERYIPAPPERVYRLAKDLEGLKPYLKEV 33

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 74  EDEDEQRKVHCEVE----VVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACR 129
             E  + +           V W E     +  +     S       YE    F+P     
Sbjct: 40  AREGARTRSRWVAVAMGKKVRWLEEEEWDDENLRNRFFSPEGDFDRYEGTWVFLPEGEGT 99

Query: 130 SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 172
               TL+YE+ +          ++++++ ++   L+ L  R  
Sbjct: 100 RVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVL 142

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

 Score = 74.6 bits (182), Expect = 2e-16
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 280 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 339
           SI V AP   VW+V    E  PE+    A ++IL ++ +      +        V     
Sbjct: 8   SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVS 67

Query: 340 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIME 399
                +      +     G F      W +  +      +++  E  M+  +    A M 
Sbjct: 68  HRVPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGGTE-MRWVQEFDMKPGAPFDNAHMT 126

Query: 400 EVIYEDLPSNLCAIRDYVEKREGDNSLA 427
             +     +N+  I+  +E R  +    
Sbjct: 127 AHLNTTTRANMERIKKIIEDRHREGQRT 154

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Length = 137

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 8/139 (5%)

Query: 280 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 339
            + V     + W   +          +         + +       G KG + M     +
Sbjct: 6   ELAVNTKKEDAWTYYSQVNQWFVWEGD-------LEQISLEGEFTTGQKGKMKMEDMPEL 58

Query: 340 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIME 399
              + E  E +   +     F +   +    +       L++SV      ++        
Sbjct: 59  AFTLVEVRENQCFSDLTATPFGNVLFEHEILENPDGTISLRHSVSLTD-SDTTEEALAFL 117

Query: 400 EVIYEDLPSNLCAIRDYVE 418
           + I+ D+P ++  ++  +E
Sbjct: 118 KQIFADVPESVGKLKQILE 136

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 16/108 (14%), Positives = 36/108 (33%)

Query: 280 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 339
           SI +K  V EVW+ +     L + +      +++  +  K  +                V
Sbjct: 6   SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEV 65

Query: 340 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKM 387
                  H + +   +    F + +G      +    T L Y+  +++
Sbjct: 66  TDIKPPYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEV 113

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 99  EMLVNADVDSVWNALTDYERLADFVP 124
            + +   V+ VW+ L D   L+  + 
Sbjct: 6   SIELKGTVEEVWSKLMDPSILSKCIM 31

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 336
              S+ +     +VW ++  + +LP+ +P +  SK+      +     +         + 
Sbjct: 4   TTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRVRHLANPD------GDTII 57

Query: 337 ARVVMDICEQHEQEISFEQVEGDF--DSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLL 393
            R+ +      E+  ++  +   F   ++      ++    + +L+++S      + S  
Sbjct: 58  ERLEV--FNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEVSDE 115

Query: 394 SEAIMEEVIYED 405
               +   IY D
Sbjct: 116 EAINLFHGIYSD 127

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} Length = 133

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 14/98 (14%)

Query: 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 336
            +  ++V+ P +EV++       +P     LA       E+   +    G          
Sbjct: 7   RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGEDWIAKGGPLG---------- 56

Query: 337 ARVVMDICEQHEQE-ISFEQVEGDFDSFQGKWLFEQLG 373
             V ++    +E   I         D  +         
Sbjct: 57  -EVRVNFAPHNEFGVIDHVVTLP--DGLKVYNALRVTP 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	663
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.84
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.76
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.73
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.63
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.57
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.55
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.39
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	99.33
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	99.27
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.19
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	99.11
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.03
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	98.95
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	98.84
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	98.83
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	98.79
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.71
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	98.49
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.44
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	98.44
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	98.39
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.34
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	98.3
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	98.24
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.18
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	98.16
d1fm4a_	159	Major tree pollen allergen {European white birch (	98.13
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	98.11
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	98.04
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.0
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	97.94
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.89
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	97.81
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	97.78
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	97.64
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	97.51
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.4
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	97.27
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	97.14
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	96.51
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	95.46
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	93.7
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	92.95
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	92.9
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	92.14
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	86.78
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	86.64
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	85.05
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	82.27
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	80.25

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=6.1e-20  Score=164.17  Aligned_cols=141  Identities=18%  Similarity=0.246  Sum_probs=115.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      +|+++++|+||+++||++|+||++||+|+|+|.+++++++.++...+..........+.++.+++.   ..+++.|.|++
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~   78 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEW---DDENLRNRFFS   78 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE---ETTTTEEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEeeeeeEEEEEEEEE---cCCCCEEEEEE
Confidence            489999999999999999999999999999999999999988876654432222222444444322   34679999999


Q ss_pred             EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccC--ccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          356 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       356 VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~g--g~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      ..|+|..+.|.|+|++.++ +|+|+|++++++..+  ..++..++++.+++++..+|++|++++++.
T Consensus        79 ~~g~~~~~~g~w~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  144 (146)
T d2d4ra1          79 PEGDFDRYEGTWVFLPEGE-GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  144 (146)
T ss_dssp             EEESCSEEEEEEEEEECSS-SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCcceEEEEEEEEecCC-ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999986 599999999986422  246678899999999999999999999874

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.76  E-value=7.6e-18  Score=151.18  Aligned_cols=145  Identities=21%  Similarity=0.350  Sum_probs=111.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE---eccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE---GCKGLLYMVLHARVVMDICEQHEQEIS  352 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~---g~~gll~~~~~~rvVLDV~E~pprrIs  352 (663)
                      +++.+|+|+||+++||++|+|+++||+|+|+|.+++++.+.++.......   +.... ...+...++   .+.+...+.
T Consensus         4 ~~e~si~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~   79 (155)
T d2rera1           4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGR-VWEWVSHRV---PDKGSRTVR   79 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSC-CCEEEEEEE---EEGGGTEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeee-eEEEEEEEE---EcCCccEEE
Confidence            47889999999999999999999999999999999999877665433222   11111 122233222   123446777


Q ss_pred             EEEEe-cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041          353 FEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS  425 (663)
Q Consensus       353 fr~Ve-GdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~  425 (663)
                      |.... +++..+.|.|+|++.++ +|+|++..++++.+..+++..++.+.+++++..+|++||+++|++..+.+
T Consensus        80 ~~~~~~~~~~~~~~~w~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~~~~  152 (155)
T d2rera1          80 AHRVETGPFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQ  152 (155)
T ss_dssp             EEESSCTTEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeecCccceeeEEEEEEeecCC-ccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence            77654 67789999999999975 69999888887655567777788999999999999999999998876554

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.73  E-value=3.6e-17  Score=148.93  Aligned_cols=139  Identities=14%  Similarity=0.231  Sum_probs=111.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC--CEE--EEEE-EeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKV--RILQ-EGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g--n~v--rv~q-~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      +..+.+|++||++||+++.|+|+||+|+|+|.+++|+++.+  +..  .... .+..+.. ..+.....   ...++..+
T Consensus         4 ~~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~   79 (148)
T d1t17a_           4 HVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLR-EKFATRVR---RDKDARSI   79 (148)
T ss_dssp             EEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSC-CEEEEEEE---EETTTCEE
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeeeE-EEEEEEee---ecCCceEE
Confidence            45677999999999999999999999999999999998743  322  2222 2333321 33343322   22345788


Q ss_pred             EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          352 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       352 sfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      .+...+|+|+.+.|.|+|++.++ +|+|+|.++++++  .+++..+++.++.+.+..+++||++||++.|+
T Consensus        80 ~~~~~~g~f~~l~~~W~f~~~~~-~T~V~~~l~fe~~--~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~lyg  147 (148)
T d1t17a_          80 DVSLLYGPFKRLNNGWRFMPEGD-ATRVEFVIEFAFK--SALLDAMLAANVDRAAGKLIACFEARAQQLHG  147 (148)
T ss_dssp             EEEESSTTSSCEEEEEEEEEETT-EEEEEEEEEECCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEeccCchhhhcccceeeccCCC-ceEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888899999999999999876 6999999999974  77889999999999999999999999999987

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.63  E-value=3.5e-15  Score=131.45  Aligned_cols=134  Identities=12%  Similarity=0.118  Sum_probs=104.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee--cCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCCeE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR--ENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEI  351 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer--~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pprrI  351 (663)
                      |+++.+|+|+||+++||++|+|+++||+|+|.+..++....  .|....+...+...   +.++      +.+ .+++++
T Consensus         1 m~~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~------v~~~~p~~~~   71 (137)
T d2b79a1           1 MKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMPE---LAFT------LVEVRENQCF   71 (137)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSCC---EEEE------ECCCBTTTEE
T ss_pred             CceEEEEEEcCCHHHHHHHHhhhhhCccccCcccceeecccccceEEEEEEEcCCcc---eeee------eecccCCcEE
Confidence            56889999999999999999999999999999999997654  23333343322211   2221      222 467899


Q ss_pred             EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          352 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       352 sfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .|.. .+++....+.|.+++.++|+|+|+|++++.+. ..++...++.+.+.+++...|++||+++|.
T Consensus        72 ~~~~-~~~~~~~~~~~~~~~~~~g~t~vt~~~~~~g~-~~~~~~~~~~~~v~~~~~~~l~~LK~~~Ea  137 (137)
T d2b79a1          72 SDLT-ATPFGNVLFEHEILENPDGTISLRHSVSLTDS-DTTEEALAFLKQIFADVPESVGKLKQILET  137 (137)
T ss_dssp             EEEE-EETTEEEEEEEEEEECTTSCEEEEEEEEECSC-SCCTTHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             EEEe-cccceeeeeEEEEccCCCCcEEEEEEEecccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9986 46677889999999999889999999999743 355667788999999999999999999984

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.57  E-value=6.8e-14  Score=121.90  Aligned_cols=140  Identities=10%  Similarity=0.128  Sum_probs=94.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041          275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE  354 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr  354 (663)
                      ++++.+|.|+|||++||++|+|+++||+|+|+|+++++.....+.. ....  .......+.......... .+....+.
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~   78 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIE-LRLS--LGPLRGDARVRASFEDLE-KPSKATVK   78 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEEEEE-EEEE--SSSSEEEEEEEEEEEEEE-TTTEEEEE
T ss_pred             EEEEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeeccccccee-EEEE--EEEEeeEeeeeeeeeeec-CCcceeEE
Confidence            5799999999999999999999999999999999988754322221 1111  111112222222222222 33333333


Q ss_pred             EEe--c-CCceeEEEEEEEEcCCCeEEEEEEEEEEecc-CccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          355 QVE--G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-NSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       355 ~Ve--G-dFr~f~G~WtLeplgdGgTrVtYtve~eP~~-gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ...  + ....+.+.|+|++.++ +|+|+|+.++.+.+ ...++..++.+.+++.+...|++|+++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~~-gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~  146 (147)
T d2ns9a1          79 GSGRGAGSTLDFTLRFAVEPSGG-GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  146 (147)
T ss_dssp             EEEECSSEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EeeeccccceeeEEEEEEEecCC-CcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222  2 2347788999999865 69999999998741 123456788999999999999999998764

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.55  E-value=1.4e-13  Score=123.70  Aligned_cols=131  Identities=15%  Similarity=0.291  Sum_probs=98.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      ++..++.|+|||++||++|+||+++|+|+|.+.+++.... |. .+.. ....+..   +..+  +...+.+++++.|++
T Consensus         3 ~~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~~-G~-~R~~-~~~~g~~---~~E~--l~~~d~~~~~~~y~~   74 (138)
T d3cnwa1           3 HTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG-GR-VRHL-ANPDGDT---IIER--LEVFNDKERYYTYSI   74 (138)
T ss_dssp             EEEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEGG-GT-EEEE-ECTTCCE---EEEE--EEEEETTTTEEEEEE
T ss_pred             cEEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEeecC-ce-eEEE-EecCCce---eEEE--EEEEeCCCcEEEEEE
Confidence            4889999999999999999999999999999999987642 33 2222 1222211   2232  222234668999999


Q ss_pred             EecCC--ceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          356 VEGDF--DSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       356 VeGdF--r~f~G~WtLeplgd-GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      ++|++  ..+.|+|+|.|.++ ++|+|+|+..|+|.  + +++..+..+++..+...|++|+++.
T Consensus        75 ~~~~~p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~--~-~~~~~~~~~~~~~~~~~l~~L~~~f  136 (138)
T d3cnwa1          75 MNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPV--E-VSDEEAINLFHGIYSDGLKALQQAF  136 (138)
T ss_dssp             EECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEES--S-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcceeeEEEEEEEECCCCCeEEEEEEEEEecC--C-CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99876  58899999999875 47999999999984  3 3444566778888889999998875

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.39  E-value=1.6e-12  Score=115.21  Aligned_cols=139  Identities=13%  Similarity=0.128  Sum_probs=89.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEE--
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE--  354 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr--  354 (663)
                      ...++.|+||+++||++|+|+++|++|+|+|.++++++.......+. .....+ ...+..+..+.... .+......  
T Consensus         3 ~s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~   79 (147)
T d2pcsa1           3 GNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQ-IGIAAV-KGKYDAIIEVTDIK-PPYHYKLLVN   79 (147)
T ss_dssp             EEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEE-ECCGGG-CEEEEEEEEEEEEE-TTTEEEEEEE
T ss_pred             CCceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEEEEEEE-Eeecce-eeeeEEEEEEeccC-cccceeEeec
Confidence            67899999999999999999999999999999999886422222222 222222 23444443332222 23333222  


Q ss_pred             EEe-cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          355 QVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       355 ~Ve-GdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      ... +.+..+.+.|.+.+.++++|+|+|++++++.  ++++. +.++++......++.++.++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~--g~l~~-l~~~li~~~~~~~~~~f~~~~~~~l  144 (147)
T d2pcsa1          80 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVG--GKVAA-IGQRMLGGVAKLLISDFFKKIQKEI  144 (147)
T ss_dssp             EEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEE--SGGGG-GCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhcceeEEeeecccCCcEEEEEEEEEEEC--cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222 3344677888888888889999999999974  44432 4455555566666666666666553

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2.2e-11  Score=114.77  Aligned_cols=164  Identities=10%  Similarity=0.056  Sum_probs=115.7

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeec-
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-  316 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~-  316 (663)
                      ..+|+..++.+|+       +||.|..++    . +...++++.+|++|+++|+++|.|.+.+++|.|.|.++++++.- 
T Consensus        19 ~~~W~~~~~~~~v-------~v~~~~~~~----~-~~~~~r~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~   86 (199)
T d1jssa_          19 EDEWRVAKKAKDV-------TVWRKPSEE----F-NGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFE   86 (199)
T ss_dssp             GGGCEEEEEETTE-------EEEEEECSS----S-SSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECS
T ss_pred             cCCCeEEEecCCE-------EEEEEEcCC----C-CcEEEEEEEEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcC
Confidence            3489999999999       999995432    2 24569999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEE-Ee--cccee-EEEEEEEEEEEEeeeCCCeEEEEE-------EecCCc--eeEEEEEEEEcCCC--eEEEEE
Q 006041          317 NNKVRILQ-EG--CKGLL-YMVLHARVVMDICEQHEQEISFEQ-------VEGDFD--SFQGKWLFEQLGSH--HTLLKY  381 (663)
Q Consensus       317 gn~vrv~q-~g--~~gll-~~~~~~rvVLDV~E~pprrIsfr~-------VeGdFr--~f~G~WtLeplgdG--gTrVtY  381 (663)
                      ++...+++ ..  ...++ ..-|.....  ........+....       .+|.++  .+.+.|.|+|.+++  +|+|+|
T Consensus        87 ~~~~i~~~~~~~~~~~~v~~RD~v~~~~--~~~~~~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~  164 (199)
T d1jssa_          87 ENCCVMRYTTAGQLLNIISPREFVDFSY--TVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTG  164 (199)
T ss_dssp             TTEEEEEEEECCBTTTTBCCEEEEEEEE--EEEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEE
T ss_pred             CCcEEEEEEEcccCCCCcCCcEEEEEEE--EEEcCCcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEE
Confidence            34433332 21  11111 011111000  0111222221111       112233  45689999998765  799999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      .+.++|+  |.+|.++++.++...+...+++||+++
T Consensus       165 ~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         165 YIQTDLR--GMIPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EECEECC--SCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999995  789999999999999999999999874

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-10  Score=109.85  Aligned_cols=167  Identities=5%  Similarity=-0.074  Sum_probs=115.3

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEeec
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRE  316 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~-APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~  316 (663)
                      +.+|+..++.+|+       .||.+..+     +.+...++++.+|+ +|++++++++.|.+.+++|.|.+.++.... +
T Consensus        20 ~~~W~~~~~~~gv-------~vy~~~~~-----~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~-~   86 (203)
T d1ln1a_          20 GADWQLLVETSGI-------SIYRLLDK-----KTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQE-C   86 (203)
T ss_dssp             TTTCEEEEEETTE-------EEEEEEET-----TTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEE-E
T ss_pred             CCCCEEEEecCCE-------EEEEEecC-----CCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEc-c
Confidence            4599999999999       99998544     23356799999996 999999999999999999999998753333 4


Q ss_pred             CCEEEEEEEeccc--eeEEEEEEEEEEEEeeeCCCeE---EEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 006041          317 NNKVRILQEGCKG--LLYMVLHARVVMDICEQHEQEI---SFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY  381 (663)
Q Consensus       317 gn~vrv~q~g~~g--ll~~~~~~rvVLDV~E~pprrI---sfr~Ve--------GdFr--~f~G~WtLeplgdGgTrVtY  381 (663)
                      ++...+++.-...  +...-+...............+   ....+.        |..+  .+.+.|.|++.++++|+|+|
T Consensus        87 ~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~  166 (203)
T d1ln1a_          87 NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFM  166 (203)
T ss_dssp             TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEE
T ss_pred             CCcEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEE
Confidence            4444344321111  1101111100001111111111   111111        2233  56789999999888999999


Q ss_pred             EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ....+|+  |.+|.++++.+..+.++.++++|++.+.+
T Consensus       167 ~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~l~k~~~~  202 (203)
T d1ln1a_         167 YYFDNPG--GQIPSWLINWAAKNGVPNFLKDMARACQN  202 (203)
T ss_dssp             EEEECCS--SCCCHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             EEEcCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999994  78999999999999999999999998865

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.19  E-value=3.8e-11  Score=106.81  Aligned_cols=88  Identities=18%  Similarity=0.283  Sum_probs=77.9

Q ss_pred             ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------------------------
Q 006041           94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------  128 (663)
Q Consensus        94 rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------  128 (663)
                      .++..+|.|+||++.||++|+||+++++|+|++..                                             
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHRVPDKGSRTVRAHR   82 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSCCCEEEEEEEEEGGGTEEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeeeeEEEEEEEEEcCCccEEEEEe
Confidence            47889999999999999999999999999999977                                             


Q ss_pred             -----------------cCCceEE--EEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhccccccc
Q 006041          129 -----------------RSSTTTL--SYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKI  181 (663)
Q Consensus       129 -----------------~~~gT~L--tY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~~~~~~  181 (663)
                                       .++||.+  +|++++.|.+.+|...+.+.|+++++.+|.+|++++|+.-+..++.
T Consensus        83 ~~~~~~~~~~~~w~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~~~~~~  154 (155)
T d2rera1          83 VETGPFAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQRT  154 (155)
T ss_dssp             SSCTTEEEEEEEEEEEEETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ecCccceeeEEEEEEeecCCccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Confidence                             3588864  5677788999999999999999999999999999999876665543

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.3e-09  Score=103.33  Aligned_cols=168  Identities=11%  Similarity=0.078  Sum_probs=113.8

Q ss_pred             CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHH-HHhccCcccccCcCCcEEEEEee-c
Q 006041          239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSR-E  316 (663)
Q Consensus       239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWa-VLTDyEnyPeWiP~V~sSrVLer-~  316 (663)
                      ++|+..+...+.      +.+|.+..      .+....++++.+|++|++.|++ ++.|.+.+++|.|.|.++++++. +
T Consensus        28 ~~W~~~~~~~~~------~~~~~~~~------~~~~~~~k~~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~   95 (214)
T d1em2a_          28 ENWKFEKNNEYG------DTVYTIEV------PFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVE   95 (214)
T ss_dssp             GGCEEEEECTTC------CEEEEEEE------TTTEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEET
T ss_pred             CCCeEEEEcCCE------EEEEEEec------CCCcEEEEEEEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcC
Confidence            589998766555      15555532      2334568999999999999985 88999999999999999999987 4


Q ss_pred             CCEEEEEEE-e--cccee-EEEEEEEEEEEEeeeCCC-eEEEEEEe--------cCCc--eeEEEEEEEEcCC--CeEEE
Q 006041          317 NNKVRILQE-G--CKGLL-YMVLHARVVMDICEQHEQ-EISFEQVE--------GDFD--SFQGKWLFEQLGS--HHTLL  379 (663)
Q Consensus       317 gn~vrv~q~-g--~~gll-~~~~~~rvVLDV~E~ppr-rIsfr~Ve--------GdFr--~f~G~WtLeplgd--GgTrV  379 (663)
                      ++...++.. .  ...++ ..-|.....  .....+. .+....+.        |.++  .+.+.|.|++.++  +.|+|
T Consensus        96 ~~~~i~~~~~~~~~~~~vs~RD~v~~~~--~~~~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~v  173 (214)
T d1em2a_          96 DNTLISYDVSAGAAGGVVSPRDFVNVRR--IERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTF  173 (214)
T ss_dssp             TTEEEEEEEECCBTTTTBCCEEEEEEEE--EEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEE
T ss_pred             CCceEEEEEecccCCCCCCCcEEEEEEE--EEEcCCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEE
Confidence            444333322 1  11111 111111111  1111222 22222222        2233  4568899999754  57999


Q ss_pred             EEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          380 KYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       380 tYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      +|...++|+  |.+|.++++.++...+...+++|++++.+..+
T Consensus       174 t~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lrk~~~k~~a  214 (214)
T d1em2a_         174 VWILNTDLK--GRLPRYLIHQSLAATMFEFAFHLRQRISELGA  214 (214)
T ss_dssp             EEEECEECC--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCC--CCCCHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence            999999995  78999999999999999999999999988653

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=6.2e-10  Score=98.26  Aligned_cols=79  Identities=14%  Similarity=0.264  Sum_probs=70.6

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      .|++++.|+||++.||++||||+++.+|+|++.+                                              
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g   81 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEWDDENLRNRFFSPEG   81 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEeeeeeEEEEEEEEEcCCCCEEEEEEccC
Confidence            4899999999999999999999999999999988                                              


Q ss_pred             -------------cCCceEEEEEEEEecCC----CCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041          129 -------------RSSTTTLSYEVNVIPRL----NFPAIFLERIIRSDLPVNLQALACRAER  173 (663)
Q Consensus       129 -------------~~~gT~LtY~v~V~P~f----~vP~~lie~~lr~dLp~nL~Ai~~~Ae~  173 (663)
                                   .++||.++|+++..+..    .++..++++.+++++..+|.+++++++.
T Consensus        82 ~~~~~~g~w~l~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  143 (146)
T d2d4ra1          82 DFDRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  143 (146)
T ss_dssp             SCSEEEEEEEEEECSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEEEEecCCceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         35889999999886554    4566799999999999999999999985

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.95  E-value=5.5e-10  Score=96.63  Aligned_cols=78  Identities=14%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +++.+|.|+||++.||++|+|++++++++|.+.+                                              
T Consensus         4 k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (147)
T d2ns9a1           4 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSGRG   83 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEEEEEEEEESSSSEEEEEEEEEEEEEETTTEEEEEEEEEC
T ss_pred             EEEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeecccccceeEEEEEEEEeeEeeeeeeeeeecCCcceeEEEeeec
Confidence            6899999999999999999999999999999987                                              


Q ss_pred             ---------------cCCceEEEEEEEEecCCCCCH---HHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 ---------------RSSTTTLSYEVNVIPRLNFPA---IFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 ---------------~~~gT~LtY~v~V~P~f~vP~---~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                     .++||.++|+.++.+..+++.   .+++..+++.+...|.+|+++++
T Consensus        84 ~~~~~~~~~~~~l~~~~~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~  145 (147)
T d2ns9a1          84 AGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  145 (147)
T ss_dssp             SSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccceeeEEEEEEEecCCCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                           358899999999988765554   48999999999999999999875

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=98.84  E-value=7.1e-09  Score=90.33  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      .++.+|.|+||+|+||++|||+++|++++|.+..                                              
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~   81 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMPELAFTLVEVRENQCFSDLTATPFGN   81 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSCCEEEEECCCBTTTEEEEEEEETTEE
T ss_pred             ceEEEEEEcCCHHHHHHHHhhhhhCccccCcccceeecccccceEEEEEEEcCCcceeeeeecccCCcEEEEEeccccee
Confidence            4788999999999999999999999999999877                                              


Q ss_pred             ----------cCCceEEEEEEEEec-CCCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041          129 ----------RSSTTTLSYEVNVIP-RLNFPAIFLERIIRSDLPVNLQALACRAE  172 (663)
Q Consensus       129 ----------~~~gT~LtY~v~V~P-~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae  172 (663)
                                .+++|+++|++++.+ ..++...++...++++++..|..||+.+|
T Consensus        82 ~~~~~~~~~~~~g~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l~~LK~~~E  136 (137)
T d2b79a1          82 VLFEHEILENPDGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILE  136 (137)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             eeeEEEEccCCCCcEEEEEEEecccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      246799999999984 55666668889999999999999999997

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.83  E-value=1.7e-08  Score=90.45  Aligned_cols=125  Identities=12%  Similarity=0.144  Sum_probs=83.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCCeEEEEE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEISFEQ  355 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pprrIsfr~  355 (663)
                      +..+|+|++|+++||++++|++++|+|+|++.+++.+.  ++..+.. .+..+    .+..    ++++ .+++.|.|+.
T Consensus         7 ~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~~--~~~~~~~-~~~~G----~~~~----~i~~~~p~~~i~w~~   75 (133)
T d2qpva1           7 RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEAD--GEDWIAK-GGPLG----EVRV----NFAPHNEFGVIDHVV   75 (133)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEE--TTEEEEE-CSSSC----EEEE----EECCCCSSCBCCEEE
T ss_pred             EEEEEEECCCHHHHHHHHhChhhcchhhhccceeEEec--CCcEEEE-ecCCC----cEEE----EEEEcCCCCEEEEEE
Confidence            45679999999999999999999999999999886653  3433221 12112    1222    2333 4568999998


Q ss_pred             EecCCceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          356 VEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       356 VeGdFr~f~G~WtLeplgd-GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ..|+-  ..|.+.|++.++ ++|.+.++.. .|.  + +....++. ..+.+...|..||+.+|.
T Consensus        76 ~~~~~--~~g~v~fr~~~~g~gt~v~~~~~-~pp--g-~~~~~~~~-~~~~v~~dL~rlK~l~Ea  133 (133)
T d2qpva1          76 TLPDG--LKVYNALRVTPNGSGTEVSFTLL-RLE--G-MTDEDFEQ-DASAITADLEMLKSLLEA  133 (133)
T ss_dssp             ECTTS--CEEEEEEEEEEETTEEEEEEEEE-CCT--T-CCHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             ecCCC--CEEEEEEEEccCCCeEEEEEEEE-eCC--C-CchHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            87763  366666666533 3677777764 442  2 23333333 455678889999999884

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.2e-08  Score=92.39  Aligned_cols=162  Identities=13%  Similarity=0.067  Sum_probs=102.3

Q ss_pred             CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-c
Q 006041          238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-E  316 (663)
Q Consensus       238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~  316 (663)
                      ..+|...++.+|+       +|+.+...    .+...+.++++..|+|++++|+..+.+  .-.+|.+.|.++++++. +
T Consensus        18 ~~GW~~~~~~~gi-------~V~~kk~~----~gs~~~~~k~~~~i~a~~~~vl~~~l~--~r~~Wd~~~~~~~~le~~~   84 (197)
T d2psoa1          18 FKGWVTCSSTDNT-------DLAFKKVG----DGNPLKLWKASVEVEAPPSVVLNRVLR--ERHLWDEDFVQWKVVETLD   84 (197)
T ss_dssp             CCSCEEECCSSSC-------EEEEECCC----SSCCCCEEEEEEEESSCHHHHHHHHHH--CGGGTCTTBCCCEEEEEEE
T ss_pred             CCCceEEecCCCe-------EEEEEecC----CCCCeEEEEEEEEEcCCHHHHHHHHHH--hHHHHhhhhheEEEEEEcC
Confidence            3589999999999       99998532    122245789999999999999854433  24789999999999986 3


Q ss_pred             CCEEEEEEEeccc--eeEEEEEEEEEEEEeeeCCC--eEEEEEEec-------CCc--eeEEEEEEEEcCCCeEEEEEEE
Q 006041          317 NNKVRILQEGCKG--LLYMVLHARVVMDICEQHEQ--EISFEQVEG-------DFD--SFQGKWLFEQLGSHHTLLKYSV  383 (663)
Q Consensus       317 gn~vrv~q~g~~g--ll~~~~~~rvVLDV~E~ppr--rIsfr~VeG-------dFr--~f~G~WtLeplgdGgTrVtYtv  383 (663)
                      ++...+++.-...  +..--|........ ...+.  .+....++.       .++  .+.|.|.++|.+++.|+|+|.+
T Consensus        85 ~~~~i~y~~~~~p~pvs~RD~v~~~~~~~-~~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~  163 (197)
T d2psoa1          85 RQTEIYQYVLNSMAPHPSRDFVVLRTWKT-DLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHIC  163 (197)
T ss_dssp             TTEEEEEEEECCSSSCCCEEEEEEEEEES-CCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEE
T ss_pred             CCCEEEEEEccCCCcccceeEEEEEEEEE-eCCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEE
Confidence            3333333321111  10000111000000 01111  233333332       222  5788899999999999999999


Q ss_pred             EEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041          384 ESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY  416 (663)
Q Consensus       384 e~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R  416 (663)
                      .++|+  |.+|.|+++.+ .+.+...+..||+.
T Consensus       164 ~~Dp~--G~iP~W~~n~~-~~~~~~~~~~lr~~  193 (197)
T d2psoa1         164 RIDLK--GHSPEWYSKGF-GHLCAAEVARIRNS  193 (197)
T ss_dssp             EECCS--SSCTTTTTTHH-HHHHHHHHHHHHHT
T ss_pred             EECCC--CcCchhHHhhh-HHHHHHHHHHHHHh
Confidence            99994  78999998875 55555555556653

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.71  E-value=2.7e-07  Score=83.52  Aligned_cols=141  Identities=12%  Similarity=0.094  Sum_probs=91.6

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCC-cEE---EEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-AIS---KILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V-~sS---rVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ...+..+.+|+||+++||++++|.+++++|++.- -.+   ..-.+.++...+......+.. +.+... ++++  .+++
T Consensus        11 ~~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~-~~~~g~-v~~i--~~~~   86 (163)
T d1xuva_          11 KQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFHGV-NHDV--TEPE   86 (163)
T ss_dssp             CSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEEEE-EEEE--ETTT
T ss_pred             CceEEEEEEeCCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEecCCCc-eEEEEE-EEEe--cCCC
Confidence            4568888999999999999999999999998642 122   222234555555444433322 222322 2222  4789


Q ss_pred             eEEEEEEecC----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041          350 EISFEQVEGD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE  421 (663)
Q Consensus       350 rIsfr~VeGd----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~  421 (663)
                      +|.|...-+.    -......|+|++.++++|+++.+..+..   .......+...+..+...+|..|++.+|+..
T Consensus        87 rl~~tw~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~~~~~~~---~~~~~~~~~~g~~~GW~~~L~~L~~~le~~~  159 (163)
T d1xuva_          87 RIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQT---IEDRDGMLQSGMEEGINDSYERLDELLEKMK  159 (163)
T ss_dssp             EEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSS---HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCCCCCCCcEEEEEEEEEeCCCcEEEEEEEcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9988765432    1245678899999888888887665432   1112233455567788899999999999864

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=98.49  E-value=1e-07  Score=83.56  Aligned_cols=78  Identities=14%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC-----------------------------------------------  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~-----------------------------------------------  128 (663)
                      .++++.|++|+|.||++|+|++++++|+|++.+                                               
T Consensus         3 ~s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (147)
T d2pcsa1           3 GNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYHYKLLVNGEG   82 (147)
T ss_dssp             EEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEEEEEEEEeecceeeeeEEEEEEeccCcccceeEeecccc
Confidence            578999999999999999999999999999987                                               


Q ss_pred             ----------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041          129 ----------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS  174 (663)
Q Consensus       129 ----------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~  174 (663)
                                      .+++|.|+|++++.....++. ++.+++..-...++.++.+++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~l~~-l~~~li~~~~~~~~~~f~~~~~~~  143 (147)
T d2pcsa1          83 GPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAA-IGQRMLGGVAKLLISDFFKKIQKE  143 (147)
T ss_dssp             TTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGG-GCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhcceeEEeeecccCCcEEEEEEEEEEECcHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            347899999999998776554 345555555556666666666654

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.44  E-value=9.3e-06  Score=73.31  Aligned_cols=145  Identities=13%  Similarity=0.047  Sum_probs=91.4

Q ss_pred             eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCC
Q 006041          273 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE  348 (663)
Q Consensus       273 ~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pp  348 (663)
                      ....|+.+..|+|||++||++++|.+.+.+|++.    +..++.-.+.|+..++......+.. +.+... ++++  .++
T Consensus         5 ~~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g~-v~e~--~p~   80 (164)
T d2il5a1           5 EHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGI-YESL--VMD   80 (164)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEE-EEEE--ETT
T ss_pred             CcEEEEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEEEeecccCceEEEEEecCCcce-EEEEEE-EEEE--cCC
Confidence            3677999999999999999999999999999863    2223333345565555444433321 222332 2333  478


Q ss_pred             CeEEEEEEe-c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccc--hHH-----HHHHHHHhhHHHHHHHHHHHHHh
Q 006041          349 QEISFEQVE-G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLL--SEA-----IMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       349 rrIsfr~Ve-G-dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~L--P~~-----L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      ++|.|...- + +.......+.|.+.++|+|+|++....-+.....+  ...     -....+..+...+|..|++.+|.
T Consensus        81 ~~i~~t~~~~~~~~~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE~  160 (164)
T d2il5a1          81 EYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIET  160 (164)
T ss_dssp             TEEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEeccCCCCCceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999987532 1 11233455666666678899999887654321111  111     12334667899999999999987


Q ss_pred             hh
Q 006041          420 RE  421 (663)
Q Consensus       420 r~  421 (663)
                      ..
T Consensus       161 g~  162 (164)
T d2il5a1         161 ST  162 (164)
T ss_dssp             TS
T ss_pred             cC
Confidence            53

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=98.44  E-value=6.3e-06  Score=75.41  Aligned_cols=135  Identities=7%  Similarity=0.098  Sum_probs=91.2

Q ss_pred             EEEEEEEEEcCCHHHHHH-HHhccCcccccCcC-CcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          275 RCVVASITVKAPVSEVWN-VMTAYETLPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       275 r~VrasIvI~APpeqVWa-VLTDyEnyPeWiP~-V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      ..+..++.+++||+.+|+ ++.|+.++|.|+|. ++++++++.++  +.++.+.-+..+-. -....  .++..+...+.
T Consensus         3 ~~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~-~~~kE--rl~~iD~~~~~   79 (147)
T d1txca1           3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKT-SFVLQ--KVDAIDEANLG   79 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEE-EEEEE--EEEEEEGGGTE
T ss_pred             eEEEEEEeccCCHHHHHHhhhcccccCccccccccccceeecCCCCcceEEEEEEcCCCcc-eEEEE--EEEEEccCCcE
Confidence            357889999999999995 77799999999999 56667887654  23554433222211 11122  24444556789


Q ss_pred             EEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 006041          351 ISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI  413 (663)
Q Consensus       351 Isfr~VeGdF-----r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~AL  413 (663)
                      +.|+.++|+.     ..+...-.+.+.++|+|.+++++.|++.++..+|+-.++. .......+++++
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~-~k~~~~~~~Kav  146 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDD-ALAKGAGFFKAI  146 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHH-HHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHH-HHHHHhhhheec
Confidence            9999999973     2555666788888888999999999987666666544333 344444555544

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=98.39  E-value=7.5e-07  Score=78.93  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=64.0

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      .++.+|.|+||+++||++|+||+++++++|.+.+                                              
T Consensus         3 ~~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~~G~~R~~~~~~g~~~~E~l~~~d~~~~~~~y~~~~~~~p~~   82 (138)
T d3cnwa1           3 HTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRVRHLANPDGDTIIERLEVFNDKERYYTYSIMNAPFPVT   82 (138)
T ss_dssp             EEEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEGGGTEEEEECTTCCEEEEEEEEEETTTTEEEEEEEECSSSEE
T ss_pred             cEEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEeecCceeEEEEecCCceeEEEEEEEeCCCcEEEEEEecCCCcce
Confidence            4789999999999999999999999999999988                                              


Q ss_pred             ------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHH
Q 006041          129 ------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA  171 (663)
Q Consensus       129 ------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~A  171 (663)
                                  .+++|.++|++++.|.. +++-.+...++......|.+|+++-
T Consensus        83 ~~~~~~~l~p~~~g~~t~v~w~~~f~p~~-~~~~~~~~~~~~~~~~~l~~L~~~f  136 (138)
T d3cnwa1          83 NYLSTIQVKEGTESNTSLVEWSGTFTPVE-VSDEEAINLFHGIYSDGLKALQQAF  136 (138)
T ss_dssp             EEEEEEEEEECSSTTCEEEEEEEEEEESS-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEEECCCCCeEEEEEEEEEecCC-CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence                        13459999999999975 4555555677788888888888764

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.34  E-value=5.3e-06  Score=75.07  Aligned_cols=139  Identities=10%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      .+..+..|+||+++||++++|.+.+.+|+..    +..+++--+.|+..++......+-. +.+... ++++  .++++|
T Consensus         6 ~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~ei--~p~~rl   81 (165)
T d1xfsa_           6 DLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNK-FPNSGC-FLEV--TDEKRL   81 (165)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCE-EEEEEE-EEEE--ETTTEE
T ss_pred             EEEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeecccceeCceEEEEEECCCCce-eeEEEE-EEEe--cCCcEE
Confidence            4778889999999999999999999999743    2333444446666555444333321 222332 3333  478999


Q ss_pred             EEEEEe----------------cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 006041          352 SFEQVE----------------GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD  415 (663)
Q Consensus       352 sfr~Ve----------------GdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~  415 (663)
                      .|...-                .........|+|++.++ +|+|+.+......   .-........+..+...+|..|++
T Consensus        82 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~---~~~~~~~~~g~~~GW~~~l~~L~~  157 (165)
T d1xfsa_          82 IWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHNTP---GQRKLHEEMGFHEGWGTTITQLEE  157 (165)
T ss_dssp             EEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECSSH---HHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             EEEEeecccccccccccccccCCCCccEEEEEEEEEcCC-cEEEEEEEEcCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            886421                01113467899999765 5999987653211   011222333366788899999999


Q ss_pred             HHHhhhC
Q 006041          416 YVEKREG  422 (663)
Q Consensus       416 RAEkr~a  422 (663)
                      .+|+..+
T Consensus       158 ~le~~~a  164 (165)
T d1xfsa_         158 LLKQEKA  164 (165)
T ss_dssp             HHHHHSC
T ss_pred             HHHhcCC
Confidence            9998643

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=98.30  E-value=7.4e-07  Score=79.72  Aligned_cols=83  Identities=13%  Similarity=0.213  Sum_probs=75.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------  128 (663)
                      +...+-.|++|+++||+++.|+|++++|+|-..+                                              
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVRRDKDARSIDVS   82 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEEEETTTCEEEEE
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeeeEEEEEEEeeecCCceEEEEe
Confidence            4456779999999999999999999999997765                                              


Q ss_pred             -----------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhccc
Q 006041          129 -----------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGW  177 (663)
Q Consensus       129 -----------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~~  177 (663)
                                       .++||.++|.++...+.+++..+++..+.+-+..++.|+++||+.+|+.
T Consensus        83 ~~~g~f~~l~~~W~f~~~~~~T~V~~~l~fe~~~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~lyg~  148 (148)
T d1t17a_          83 LLYGPFKRLNNGWRFMPEGDATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHGA  148 (148)
T ss_dssp             ESSTTSSCEEEEEEEEEETTEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCchhhhcccceeeccCCCceEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                             3588999999999999999999999999999999999999999998763

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=98.24  E-value=1.8e-05  Score=72.99  Aligned_cols=137  Identities=13%  Similarity=0.248  Sum_probs=93.7

Q ss_pred             EEEEEEEEcCCHHHHHHHH-hccCc-ccccCcC-CcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          276 CVVASITVKAPVSEVWNVM-TAYET-LPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVL-TDyEn-yPeWiP~-V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      .+..++.+++|++.+|+++ .|..+ +|.++|. +++++ ++.+|  +.++.+.-...+-. ..+..+  ++..+...+.
T Consensus         4 t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGdG~~GsIr~~~~~~~~~~-~~~Ker--ve~iD~~~~~   79 (153)
T d2bk0a1           4 THVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPI-TTMTLR--IDGVNKEALT   79 (153)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESSSSTTCEEEEECCTTSSC-CEEEEE--EEEEETTTTE
T ss_pred             EEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEE-EECCCCCCeEEEEEEecCccc-eeeEEE--EEEEecCccE
Confidence            4778999999999999986 68887 5999997 56667 46544  34555443332211 112233  3444556799


Q ss_pred             EEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          351 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       351 Isfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      +.|..++|+     ++.+...+.+.+.++|+|.+++++++++..+...++ ---+...+.+..+++++.+++
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~-e~~k~~~e~~~~~~K~iE~YL  150 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPE-ENIKYANEQNTALFKALEAYL  150 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999997     247899999999998899999999999864433333 222233444666677776654

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.18  E-value=1.5e-05  Score=70.12  Aligned_cols=131  Identities=15%  Similarity=0.149  Sum_probs=80.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcCCc----EEEEEeecCCEEEEEEEe-ccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA----ISKILSRENNKVRILQEG-CKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~----sSrVLer~gn~vrv~q~g-~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      |+.+.+|+||+++||++++|.+.+.+|++.-.    .+.+--+.|+..+..... -.+.. ...... ++++  .++++|
T Consensus         4 i~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~-~~~~g~-v~~~--~p~~~i   79 (143)
T d1z94a1           4 IRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQK-HAFGGR-YLEL--VPGERI   79 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCE-EEEEEE-EEEE--ETTTEE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcE-EEEEEE-EEEe--cCCeEE
Confidence            56667899999999999999999999986421    222222345554443332 22221 222222 2233  478999


Q ss_pred             EEEEEecC--C-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          352 SFEQVEGD--F-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       352 sfr~VeGd--F-r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .|.....+  . ....-.|+|++.++ +|+|++....-+.  .     .....+..+....|..|++.+|+
T Consensus        80 ~~t~~~~~~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~--~-----~~~~~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          80 RYTDRFDDAGLPGDMITTITLAPLSC-GADLSIVQEGIPD--A-----IPPENCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEEEEESCCC---CEEEEEEEEEETT-EEEEEEEEECCCT--T-----SCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEeccCCCCCCcEEEEEEEEEcCC-CEEEEEEEEcCCC--h-----hHHHHHHHHHHHHHHHHHHHHcC
Confidence            88754321  1 24467899999876 6999887643221  1     11224556788889999988874

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=98.16  E-value=4.1e-05  Score=70.82  Aligned_cols=142  Identities=15%  Similarity=0.198  Sum_probs=95.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hccCcc-cccCcCC-cEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          275 RCVVASITVKAPVSEVWNVM-TAYETL-PEIVPNL-AISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVL-TDyEny-PeWiP~V-~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ..+..++.+++|++.+|+++ .|+.++ |.++|.. +++++++.++  +.++.+.-+..+-. -....+  ++..+...+
T Consensus         3 ~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~-~~~KEr--ie~iD~~~~   79 (159)
T d1e09a_           3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQY-GYVKHK--IDSIDKENY   79 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSC-EEEEEE--EEEEETTTT
T ss_pred             eEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCc-EEEEEE--EEEEccccc
Confidence            35778899999999999985 799875 9999995 6668887654  34555543433321 112222  344455679


Q ss_pred             eEEEEEEecCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          350 EISFEQVEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       350 rIsfr~VeGdFr-----~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      .+.|+.++|++.     .+...-.+.+.++++|.+++++++++..+..+|+- --....+.+..++++|.+.+-+.
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e-~~~~~~e~~~~~~K~iEayLlan  154 (159)
T d1e09a_          80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEE-HVKAGKEKASNLFKLIETYLKGH  154 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999852     34455566667777899999999998654434332 22344556667777777776553

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=98.13  E-value=3.1e-05  Score=71.63  Aligned_cols=142  Identities=11%  Similarity=0.116  Sum_probs=97.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hccCc-ccccCcCC-cEEEEEeecCC--EEEEEEEeccceeEEEEEEEEEEEEeeeCCC
Q 006041          275 RCVVASITVKAPVSEVWNVM-TAYET-LPEIVPNL-AISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQ  349 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVL-TDyEn-yPeWiP~V-~sSrVLer~gn--~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr  349 (663)
                      ..+..++.+++|++.+|+++ .|+.+ +|.|+|.+ +++++++.+++  .++.+.-+..+-. -....  +++..+...+
T Consensus         3 ~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~-~~~Ke--rve~iD~~~~   79 (159)
T d1fm4a_           3 FNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPF-KYVKD--RVDEVDHTNF   79 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSS-SEEEE--EEEEEETTTT
T ss_pred             eEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCc-eEEEE--EEEEEccccc
Confidence            35778899999999999985 69888 59999995 56678877543  4554433222211 11122  2344455679


Q ss_pred             eEEEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041          350 EISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR  420 (663)
Q Consensus       350 rIsfr~VeGdF-----r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr  420 (663)
                      .+.|..++|+.     +.+...-.+.+.++|+|.+++++++++..+..+++--+ +...+.+..+++++.+++-+.
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~-k~~ke~~~~~~K~iE~YLlan  154 (159)
T d1fm4a_          80 KYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQV-KASKEMGETLLRAVESYLLAH  154 (159)
T ss_dssp             EEEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTT-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhhC
Confidence            99999999973     47788889999988999999999999865443332111 234455667778777776554

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=98.11  E-value=6e-05  Score=69.73  Aligned_cols=141  Identities=9%  Similarity=0.083  Sum_probs=96.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHH-hccCcc-cccCcCCcEEEEEeecCC--EEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          275 RCVVASITVKAPVSEVWNVM-TAYETL-PEIVPNLAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       275 r~VrasIvI~APpeqVWaVL-TDyEny-PeWiP~V~sSrVLer~gn--~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      ..+..++.+++|++.+|.++ .|..++ |.+.+.++++++++.+|+  .++.+.-+..+-  ..+ .+-+++..+...+.
T Consensus         3 ~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g~~--~~~-~Kerie~vD~e~~~   79 (157)
T d1xdfa1           3 FTFEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGE--TKY-VLHKIEAVDEANLR   79 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTE--EEE-EEEEEEEEEGGGTE
T ss_pred             eEEEEEEeccCCHHHHHHHHhhchhhccccchhheecceeecCCCCCCcEEEEEEcCCCc--cEE-EEEEEEEEechhcE
Confidence            35788999999999999865 699886 888888899999987643  455443332332  111 22234544556789


Q ss_pred             EEEEEEecC-----CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          351 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       351 Isfr~VeGd-----Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      +.|..++|+     ++.+...-.+.+.++|+|.+++++++++.++...++--+ +...+.+..+++++.+++-+
T Consensus        80 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~i-k~~~e~~~~~~K~iEaYLla  152 (157)
T d1xdfa1          80 YNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEG-KAAKARGDAFFKAIENYLSA  152 (157)
T ss_dssp             EEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHH-HHHHHHHHTTTHHHHHHHHT
T ss_pred             EEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            999999997     247777888999888899999999999875543443222 23344455566666665543

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=98.04  E-value=9.9e-05  Score=68.08  Aligned_cols=139  Identities=10%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             EEEEEEEEcCCHHHHHHHH-hccCcc-cccCcCCcEEEEEeecCC--EEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041          276 CVVASITVKAPVSEVWNVM-TAYETL-PEIVPNLAISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQEI  351 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVL-TDyEny-PeWiP~V~sSrVLer~gn--~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI  351 (663)
                      .+..++..++||+.+|.++ .|..++ |.++|.++++++++.+|+  .++.+.-+..+-  ..+. +-.++..+...+.+
T Consensus         4 t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGdGg~GsIk~~~~~~~~~--~~~~-Kerie~iD~en~~~   80 (155)
T d1icxa_           4 AFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGH--TSFV-LHKLDAIDEANLTY   80 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSS--EEEE-EEEEEEEEGGGTEE
T ss_pred             EEEEeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecCCCccceEEEEEeccCCc--eEEE-EEEEEEEcccccEE
Confidence            4778899999999999985 688887 899999999999987653  344443333222  1111 22345455677999


Q ss_pred             EEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041          352 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK  419 (663)
Q Consensus       352 sfr~VeGdF-----r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk  419 (663)
                      .|..++|+.     ..+...-.+.+.++++|.+++++++++.++ .+|+.-.. ...+....+++++.+++-+
T Consensus        81 ~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~-~~~e~~~~-~~ke~~~~~fK~iE~YLla  151 (155)
T d1icxa_          81 NYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD-VLSETVRD-QAKFKGLGLFKAIEGYVLA  151 (155)
T ss_dssp             EEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSS-SCCHHHHT-THHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCC-CCChhhHH-HHHHHHHHHHHHHHHHHhh
Confidence            999999984     355777788888888899999999999744 46543322 2345556677777766544

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.00  E-value=3.1e-05  Score=67.83  Aligned_cols=127  Identities=14%  Similarity=0.198  Sum_probs=77.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .|+.++.|+|||++||++|+|.+.+..|++....   ..+.+..  +...+..+.    +... ++++  .++++|.|..
T Consensus         6 ~i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~~~---~~~~g~~--~~~~~~~~~----~~g~-v~~~--~~~~~l~~~~   73 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAVSTSEGLAFWFMENDL---KAETGHH--FHLQSPFGP----SPCQ-VTDV--ERPIKLSFTW   73 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHTTSHHHHHTTSCCBCC---CSCTTCE--EEEECSSCE----EEEE-EEEE--ETTTEEEEEE
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHHhceEccCCcc---cccceee--EEecCCccc----eeEE-EEEE--eCCcEEEEEe
Confidence            3889999999999999999999999999986421   1122322  222222221    1222 2233  4789999986


Q ss_pred             EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-----chHHHHHHHHHhhHHHHH-HHHHHHHH
Q 006041          356 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-----LSEAIMEEVIYEDLPSNL-CAIRDYVE  418 (663)
Q Consensus       356 VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~-----LP~~L~er~vre~L~~~L-~ALR~RAE  418 (663)
                      ..+   ....+|+|++.++ +|+|++....-+.....     .....+...++.+-...| +.||+.+|
T Consensus        74 ~~~---~~~v~~~l~~~~~-gT~lt~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~vE  138 (138)
T d1xn5a_          74 DTD---GWSVTFHLKEEEN-GTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVE  138 (138)
T ss_dssp             TTT---TEEEEEEEEECSS-SEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC
T ss_pred             cCC---CeEEEEEEEEcCC-cEEEEEEEecCCCchhhhhhhcccchHHHHHHHHhHHHHHHHHHHHHhC
Confidence            333   3577899999865 69999876532211111     112234445555655555 46777664

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=97.94  E-value=2.9e-05  Score=69.30  Aligned_cols=137  Identities=14%  Similarity=0.128  Sum_probs=84.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcC------CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPN------LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~------V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      |+.+++|+||++.||+++||  .+++|.+.      +....+..+.++....  ..-++-.+.  . ..++++  .++++
T Consensus         6 v~~~~~i~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~~~~gG~~~~--~~~dG~~~~--~-g~v~ei--~p~~r   76 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVDKKGGRWYE--IDEQGEEHT--F-GLIRKV--DEPDT   76 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEETTTTEEEC--CCTTTSCCC--C-EEEEEE--ETTTE
T ss_pred             EEEEEEEeCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEEeeCCCceEEE--Eccccceee--e-EEEEEE--ecCcE
Confidence            78899999999999999996  68888754      2223334444444322  222221111  1 123333  47899


Q ss_pred             EEEEEEecCC------ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041          351 ISFEQVEGDF------DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD  423 (663)
Q Consensus       351 Isfr~VeGdF------r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~  423 (663)
                      |.|....+..      ....-+|+|++.++++|+|++....-+.. ..-...-+...+..+-..+|..|++.+|+..+.
T Consensus        77 l~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~g~~~~-~~~~~~~~~~~~~~GW~~~L~~L~~~le~~~~~  154 (155)
T d1zxfa1          77 LVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRM-GTKHAKRVRNGMDKGWPTILQSFQDKIDEEGAK  154 (155)
T ss_dssp             EEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTS-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEecCCccccccccceEEEEEEEecCCCCEEEEEEEeccCcc-cchhHHHHHhhhhhhHHHHHHHHHHHhhhhccC
Confidence            9997543321      13467899999888889999875421110 000111234456678999999999999987764

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.89  E-value=2.8e-05  Score=69.37  Aligned_cols=129  Identities=14%  Similarity=0.241  Sum_probs=81.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .|+.++.|+||+++||++|||.+.+..|++.+.   +-.+.|+...+  .+..+..    ..+ ++++  .++++|.|+.
T Consensus         9 ~i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~~~---~~~~~G~~~~~--~~~~g~~----~g~-v~~~--~p~~~l~~tw   76 (143)
T d1xn6a_           9 DIKQTIVFNASIQKVWSVVSTAEGIASWFMPND---FVLEVGHEFHV--QSPFGPS----PCK-VLEI--DEPNHLSFSW   76 (143)
T ss_dssp             CEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBC---CCCCTTCEECB--CCTTCCC----CEE-EEEE--ETTTEEEEEE
T ss_pred             eEEEEEEECCCHHHHHHHhcChHHhceEeeccC---cccccCceEEE--eccccce----eEE-EEEE--eCCcEEEEEE
Confidence            489999999999999999999999999998642   22233443222  2222221    122 2233  4789999985


Q ss_pred             EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHHh
Q 006041          356 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVEK  419 (663)
Q Consensus       356 VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP-----~~L~er~vre~L~~~L-~ALR~RAEk  419 (663)
                      -.+   ...-+|+|++.++|+|+|++...--+..+..++     .......+..+-...| +.||+.+|.
T Consensus        77 ~~~---~~~v~~~l~~~~~G~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lEG  143 (143)
T d1xn6a_          77 DTD---GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             TTT---TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             cCC---CcEEEEEEEEcCCCcEEEEEEEeCCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHhCC
Confidence            322   346789999988889999987542111111111     2234445556666676 589998873

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.81  E-value=0.0002  Score=65.73  Aligned_cols=127  Identities=15%  Similarity=0.082  Sum_probs=84.7

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ...++.++.|+||++.||+.|||-+.+..|++....  .--+.|+...+...+  +-    ...+ ++++  .++++|.|
T Consensus        11 ~~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~--~d~~~GG~~~~~~~~--~~----~~~~-v~~~--epp~rL~~   79 (160)
T d2nn5a1          11 TIYFGTERAISASPQTIWRYLTETDKLKQWFPELEI--GELGVNGFWRFILPD--FE----ETMP-FTDY--AEEKYLGV   79 (160)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEE--EECSTTCEEEEEETT--EE----EEEE-EEEE--ETTTEEEE
T ss_pred             cEEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCc--ccccCCCeeEEEcCC--CC----cceE-EEEE--ecCCEEEE
Confidence            556889999999999999999999999999986432  222456665544321  11    1222 2233  48899998


Q ss_pred             EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                      ..-.     -.-+|+|.+.++++|+|+++....+......+      ....+=...|..|++.+|....
T Consensus        80 tW~~-----~~v~~eL~~~~~~~t~l~l~~~~~~~~~~~~~------~~~~GW~~~Ld~L~~~leg~~~  137 (160)
T d2nn5a1          80 TWDT-----GIIYFDLKEQAPHQTLLVFSESLPENFTTPRH------KDIAGWSIVLNRLKQVVETPDA  137 (160)
T ss_dssp             EETT-----EEEEEEEEEEETTEEEEEEEEEECTTCSSCHH------HHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EecC-----ceEEEEEecCCCCeEEEEEEEecCccccchhh------hhHHHHHHHHHHHHHHHcCCCC
Confidence            8632     25688999887889999998876432111111      1124667899999999986433

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9e-05  Score=68.64  Aligned_cols=96  Identities=8%  Similarity=0.010  Sum_probs=84.9

Q ss_pred             cCCceEEEEEEccCCc-ceEEEEEEEc-cCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041           78 EQRKVHCEVEVVSWRE-RRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~-rrV~a~i~i~-ap~e~VW~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      ..++|.|-....++.. .-+.+...|+ ++++.++++|.|.+...++.|++.+                           
T Consensus        28 ~~~gv~vy~~~~~~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~~~~~~i~y~~~~~p~p~~~RD~  107 (203)
T d1ln1a_          28 ETSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDY  107 (203)
T ss_dssp             EETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETTEEEEEEEECCCTTSCCEEE
T ss_pred             ecCCEEEEEEecCCCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEccCCcEEEEEEcccccccCCceE
Confidence            3467888877776665 4599999996 9999999999999999999999988                           


Q ss_pred             --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041          129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS  158 (663)
Q Consensus       129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~  158 (663)
                                                                        ..++|.++|.+.+.|+.++|.+|+..+.++
T Consensus       108 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~iP~~lvn~~~~~  187 (203)
T d1ln1a_         108 VYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKN  187 (203)
T ss_dssp             EEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSCCCHHHHHHHHHT
T ss_pred             EEEEEEEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCcCHHHHHHHHHHH
Confidence                                                              247899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHH
Q 006041          159 DLPVNLQALACRAER  173 (663)
Q Consensus       159 dLp~nL~Ai~~~Ae~  173 (663)
                      ..|..|++|++.|.+
T Consensus       188 ~~~~~~~~l~k~~~~  202 (203)
T d1ln1a_         188 GVPNFLKDMARACQN  202 (203)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999864

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.64  E-value=0.00028  Score=61.46  Aligned_cols=129  Identities=10%  Similarity=0.001  Sum_probs=74.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhccCcccccCcC-C-----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041          277 VVASITVKAPVSEVWNVMTAYETLPEIVPN-L-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE  350 (663)
Q Consensus       277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~-V-----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr  350 (663)
                      ++.+..|+|||++||++++|.+.+.+|++. -     ....+--+.++..........+-. +....+ ++++  .++++
T Consensus         3 l~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~-~~~~g~-v~~~--~p~~r   78 (143)
T d3elia1           3 LRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQR-YKVSGQ-VTHV--KPPQS   78 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCE-EEEEEE-EEEE--ETTTE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcE-EEEEEE-EEEc--CCCCE
Confidence            667788999999999999999999999852 1     122222223333333333333321 222222 2233  47888


Q ss_pred             EEEEEE--ecCC-c--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          351 ISFEQV--EGDF-D--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       351 Isfr~V--eGdF-r--~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      |.|...  ..+- .  ...-+|+|++.++ +|+|+++..-       ++..-.......+...+|..|++.+
T Consensus        79 l~~t~~~~~~~~~~~~~~~vt~~l~~~~~-gT~l~~~~~~-------~~~~~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          79 VGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHRE-------LGDDEMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEES-------CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCCCCCcEEEEEEEEEcCC-CEEEEEEEEc-------CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            877642  2221 1  2345667788765 5999887531       2222334456778888888888765

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00027  Score=65.16  Aligned_cols=93  Identities=14%  Similarity=0.020  Sum_probs=81.6

Q ss_pred             cCCceEEEEEEccCC-cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041           78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~-~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------  128 (663)
                      ..++|.|-....+.. ..-+.|...|++|++.|+++|.|.+...++.|++.+                            
T Consensus        27 ~~~~v~v~~~~~~~~~~~~~r~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~  106 (199)
T d1jssa_          27 KAKDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISP  106 (199)
T ss_dssp             EETTEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCC
T ss_pred             ecCCEEEEEEEcCCCCcEEEEEEEEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcCCCcEEEEEEEcccCCCCcCC
Confidence            456788877766553 355999999999999999999999999999999988                            


Q ss_pred             ----------------------------------------------cC---CceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041          129 ----------------------------------------------RS---STTTLSYEVNVIPRLNFPAIFLERIIRSD  159 (663)
Q Consensus       129 ----------------------------------------------~~---~gT~LtY~v~V~P~f~vP~~lie~~lr~d  159 (663)
                                                                    .+   ++|.++|.+.+.|+.++|..++.+.+.+.
T Consensus       107 RD~v~~~~~~~~~~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~  186 (199)
T d1jssa_         107 REFVDFSYTVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMAST  186 (199)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHH
T ss_pred             cEEEEEEEEEEcCCcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCCCcHHHHHHHHHHH
Confidence                                                          12   36999999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 006041          160 LPVNLQALACR  170 (663)
Q Consensus       160 Lp~nL~Ai~~~  170 (663)
                      ++.-|..||++
T Consensus       187 ~~~~~~~Lr~~  197 (199)
T d1jssa_         187 LANFYSDLRKG  197 (199)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.40  E-value=0.00037  Score=64.22  Aligned_cols=133  Identities=6%  Similarity=0.054  Sum_probs=82.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccce------------eEEEEEEEEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGL------------LYMVLHARVVMDI  343 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gl------------l~~~~~~rvVLDV  343 (663)
                      .++-+..|+||+++||++|||-+.+.+|+....   +-.+.|+...+...+..+.            ..+.+..+ ++++
T Consensus        20 ~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~~---~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-v~~~   95 (183)
T d2k5ga1          20 SIRFERLLPGPIERVWAWLADADKRARWLAGGE---LPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHT-LLRC   95 (183)
T ss_dssp             SEEEEEEESSSSHHHHHHHHCHHHHTTTSCCCC---CCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEE-EEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChHHHhhhcCCCC---ccccCCCEEEEEecCCCCcccccccccccCCCceeEEEE-EEEE
Confidence            467788999999999999999999999986431   1122344444333211100            00122222 2233


Q ss_pred             eeeCCCeEEEEEEecC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 006041          344 CEQHEQEISFEQVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG  422 (663)
Q Consensus       344 ~E~pprrIsfr~VeGd-Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a  422 (663)
                        .++++|.|....+. -..-.-.|+|++.++ +|+|++...--+       +.-.......+-...|..|++.++....
T Consensus        96 --~p~~rl~~tw~~~~~~~~s~v~~~l~~~g~-gT~ltl~~~~~~-------~~~~~~~~~~GW~~~L~~L~~~leg~~~  165 (183)
T d2k5ga1          96 --EPPRVLALTWGGGAGEAPSEVLFELSEAGE-QVRLVLTHTRLA-------DRAAMLDVAGGWHAHLAVLAGKLAGQAP  165 (183)
T ss_dssp             --ETTTEEEEECCCCSSSSCCEEEEEEEECSS-SEEEEEEEECCC-------SHHHHHHHTTTTTTHHHHHHHHHHTSCC
T ss_pred             --eCCeEEEEEeccCCCCCcEEEEEEEEEcCC-cEEEEEEEecCC-------ChhhHHHHhhhHHHHHHHHHHHHCCCCC
Confidence              47899998865533 224466789998875 699988764211       1122234566788899999999986443

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00093  Score=62.04  Aligned_cols=95  Identities=9%  Similarity=0.105  Sum_probs=79.8

Q ss_pred             CceEEEEEEccCCcceEEEEEEEccCHHHHHH-HhhCchhhhhcccccee------------------------------
Q 006041           80 RKVHCEVEVVSWRERRIKAEMLVNADVDSVWN-ALTDYERLADFVPNLAC------------------------------  128 (663)
Q Consensus        80 ~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~-vLTDYe~la~fiP~l~~------------------------------  128 (663)
                      +.+.+.....+....-+.+...|++|++.|++ ++.|.+...++.|++.+                              
T Consensus        38 ~~~~~~~~~~~~~~~~~k~~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD  117 (214)
T d1em2a_          38 YGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRD  117 (214)
T ss_dssp             TCCEEEEEEETTTEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEE
T ss_pred             CEEEEEEEecCCCcEEEEEEEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcE
Confidence            33444444445444568999999999999985 77899999999999888                              


Q ss_pred             -------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041          129 -------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSD  159 (663)
Q Consensus       129 -------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~d  159 (663)
                                                                       .+++|.++|-+.+.|+.++|..+++..+.+-
T Consensus       118 ~v~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~  197 (214)
T d1em2a_         118 FVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAAT  197 (214)
T ss_dssp             EEEEEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHHHH
T ss_pred             EEEEEEEEEcCCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence                                                             1257999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHh
Q 006041          160 LPVNLQALACRAERS  174 (663)
Q Consensus       160 Lp~nL~Ai~~~Ae~~  174 (663)
                      ++.-+.+|++++.++
T Consensus       198 ~~~~~~~Lrk~~~k~  212 (214)
T d1em2a_         198 MFEFAFHLRQRISEL  212 (214)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.14  E-value=0.00095  Score=58.72  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=30.8

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      +..+|.|++|++.||+.++|+++|++|.|+|.+
T Consensus         7 ~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~   39 (133)
T d2qpva1           7 RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAG   39 (133)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTT
T ss_pred             EEEEEEECCCHHHHHHHHhChhhcchhhhccce
Confidence            556799999999999999999999999999987

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0028  Score=55.55  Aligned_cols=121  Identities=13%  Similarity=0.059  Sum_probs=73.3

Q ss_pred             eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041          274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF  353 (663)
Q Consensus       274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf  353 (663)
                      ...+..+.+++|||++||++++|-+.+..|+..-  +++-.+.|+..++    ..+-.    ..+ ++++  .++++|.|
T Consensus         3 T~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~~--~~~d~~~Gg~f~~----~~g~~----~G~-~~ev--~p~~rlv~   69 (132)
T d1x53a1           3 TCKITLKETFLTSPEELYRVFTTQELVQAFTHAP--ATLEADRGGKFHM----VDGNV----SGE-FTDL--VPEKHIVM   69 (132)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSC--CBCCCSTTCCCBB----TTTTE----ECC-EEEE--ETTTEEEE
T ss_pred             ceEEEEEEEECCCHHHHHHHHcCHHHHHhhhCCc--cccccccCCEEEE----Eecce----eEE-EEEE--eCCCEEEE
Confidence            3457888999999999999999999999998432  2333334443221    11111    111 2233  37788876


Q ss_pred             EE--EecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHH
Q 006041          354 EQ--VEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDY  416 (663)
Q Consensus       354 r~--VeGdF-r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~-~L~ALR~R  416 (663)
                      .-  .+.+- ....-+|+|++.+ ++|+|++...--|       ..- ...++.+-.. .++.||+.
T Consensus        70 tw~~~~~~~~~~s~vt~~l~~~~-~~T~l~l~~~g~p-------~~~-~e~~~~GW~~~~~~~lk~~  127 (132)
T d1x53a1          70 KWRFKSWPEGHFATITLTFIDKN-GETELCMEGRGIP-------APE-EERTRQGWQRYYFEGIKQT  127 (132)
T ss_dssp             EEEETTSCTTCCEEEEEECCBCS-SCEEEEEEEEEEE-------HHH-HHHHHHTTHHHHHHHHHHH
T ss_pred             EEecCCCCCCCcEEEEEEEEECC-CcEEEEEEEECCC-------cch-HHHHHhhHHHHHHHHHHHH
Confidence            53  22221 1346788999876 5699999876433       222 2344555543 57777765

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.46  E-value=0.34  Score=42.08  Aligned_cols=106  Identities=8%  Similarity=0.212  Sum_probs=72.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041          276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ  355 (663)
Q Consensus       276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~  355 (663)
                      .+..++.|++|++.+|+++.|....+ |.-.           +                   .-+++..+...+.++|+.
T Consensus         6 kl~~eveik~~a~kf~~~~~~~~~~~-~~~~-----------~-------------------KerVe~vD~en~sity~v   54 (120)
T d1vjha_           6 ALSVKFDVKCPADKFFSAFVEDTNRP-FEKN-----------G-------------------KTEIEAVDLVKKTMTIQM   54 (120)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHTTSC-SSTT-----------C-------------------EEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHhhhccCCC-CCcc-----------c-------------------EEEEEEEcCCCCEEEEEE
Confidence            57889999999999999997655432 2110           0                   111233345678999999


Q ss_pred             EecCC----ceeEEEEEEEEcCCC-eEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          356 VEGDF----DSFQGKWLFEQLGSH-HTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       356 VeGdF----r~f~G~WtLeplgdG-gTrVtYtve~eP~~g-g~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      ++|++    +.|.++..+.|.++| +|.+++++.+++..+ .+-|..+++     .+..++++|-+.+
T Consensus        55 ieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~e-----~~~~~~K~id~yL  117 (120)
T d1vjha_          55 SGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIID-----ESVKYFKKLDEAI  117 (120)
T ss_dssp             ECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHH-----HHHHHHHHHHHHH
T ss_pred             EeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHHH-----HHHHHHHHHHHHH
Confidence            99995    488999999998765 799999999997532 334554433     3333555554443

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=93.70  E-value=0.049  Score=46.62  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=30.5

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC  128 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~  128 (663)
                      .|..++.|+||++.||++|||-+.+.+..+....
T Consensus         6 ~i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~~~   39 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAVSTSEGLAFWFMENDL   39 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHTTSHHHHHTTSCCBCC
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHHhceEccCCcc
Confidence            4889999999999999999999999998876554

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=92.95  E-value=0.057  Score=47.11  Aligned_cols=32  Identities=25%  Similarity=0.493  Sum_probs=29.4

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhccccc
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVPNL  126 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l  126 (663)
                      .|..++.|+||++.||++|||-++|.+.++.-
T Consensus         9 ~i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~~   40 (143)
T d1xn6a_           9 DIKQTIVFNASIQKVWSVVSTAEGIASWFMPN   40 (143)
T ss_dssp             CEEEEEEESSCHHHHHHTTSCSHHHHTTSCCB
T ss_pred             eEEEEEEECCCHHHHHHHhcChHHhceEeecc
Confidence            48999999999999999999999999998654

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.90  E-value=0.16  Score=44.55  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             cceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           93 ERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      ...|.....|+||++.||++|||-++|.+..+
T Consensus         6 ~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~   37 (164)
T d2il5a1           6 HVEVEIEKLYKFSPELVYEAWTKKDLLKQWFM   37 (164)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCHHHHTTTSS
T ss_pred             cEEEEEEEEECCCHHHHHHHHcCHHHHhCccc
Confidence            34577788999999999999999999999654

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.25  Score=44.87  Aligned_cols=89  Identities=11%  Similarity=0.028  Sum_probs=65.7

Q ss_pred             cCCceEEEEEEccCCc--ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041           78 EQRKVHCEVEVVSWRE--RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------  128 (663)
Q Consensus        78 ~~~~V~v~~e~l~~~~--rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------  128 (663)
                      +.++|.|...+...+.  .-+.+...|+++++.|...+.++  -....|++.+                           
T Consensus        26 ~~~gi~V~~kk~~~gs~~~~~k~~~~i~a~~~~vl~~~l~~--r~~Wd~~~~~~~~le~~~~~~~i~y~~~~~p~pvs~R  103 (197)
T d2psoa1          26 STDNTDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRE--RHLWDEDFVQWKVVETLDRQTEIYQYVLNSMAPHPSR  103 (197)
T ss_dssp             CSSSCEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHC--GGGTCTTBCCCEEEEEEETTEEEEEEEECCSSSCCCE
T ss_pred             cCCCeEEEEEecCCCCCeEEEEEEEEEcCCHHHHHHHHHHh--HHHHhhhhheEEEEEEcCCCCEEEEEEccCCCcccce
Confidence            5677888888765554  45889999999999887655433  2456677766                           


Q ss_pred             -------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041          129 -------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSD  159 (663)
Q Consensus       129 -------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~d  159 (663)
                                                                       .++.|.++|.+.+.|+.++|..++... .+.
T Consensus       104 D~v~~~~~~~~~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~Dp~G~iP~W~~n~~-~~~  182 (197)
T d2psoa1         104 DFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHSPEWYSKGF-GHL  182 (197)
T ss_dssp             EEEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSCTTTTTTHH-HHH
T ss_pred             eEEEEEEEEEeCCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEEEECCCCcCchhHHhhh-HHH
Confidence                                                             246799999999999999999988875 555


Q ss_pred             hHHHHHHHHH
Q 006041          160 LPVNLQALAC  169 (663)
Q Consensus       160 Lp~nL~Ai~~  169 (663)
                      +...+..+|+
T Consensus       183 ~~~~~~~lr~  192 (197)
T d2psoa1         183 CAAEVARIRN  192 (197)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.78  E-value=10  Score=33.73  Aligned_cols=125  Identities=12%  Similarity=0.151  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHh-ccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEe-cCCce
Q 006041          285 APVSEVWNVMT-AYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDS  362 (663)
Q Consensus       285 APpeqVWaVLT-DyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~Ve-GdFr~  362 (663)
                      -+.+|+|+-|- -.++=-.|+|.+.+|+|+++.++.+.-. ..+..   ..+..+++    ..++.++.|.... |....
T Consensus        20 LTr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~~~~~Re-l~fg~---~~v~e~Vt----l~~~~~v~f~~~a~~~~~g   91 (151)
T d2ffsa1          20 LDRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRR-LYLPG---LVVEDEVV----LKAPDSAHYSIKPSAEVAG   91 (151)
T ss_dssp             CCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEE-EEETT---EEEEEEEE----EETTTEEEEEECCCSSSBE
T ss_pred             cCHHHHHHHHHHhhcCHhhcccccceEEEEEecCCeEEEE-EEECC---ceeEEEEE----EcCCcEEEEEcccccCCCC
Confidence            56789999665 4555667999999999999888865221 22222   22344433    3588999997554 44333


Q ss_pred             eEEEEEEEEcCCCeEEEEEEEEEEecc---CccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041          363 FQGKWLFEQLGSHHTLLKYSVESKMQK---NSLLSEAIMEEVIYEDLPSNLCAIRDYV  417 (663)
Q Consensus       363 f~G~WtLeplgdGgTrVtYtve~eP~~---gg~LP~~L~er~vre~L~~~L~ALR~RA  417 (663)
                      -.-.-+++..++|.=-|+|..+.....   +.-.-.-.++...++....+++-||++.
T Consensus        92 ~~l~~~Ieep~~g~L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~IRe~~  149 (151)
T d2ffsa1          92 GSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRF  149 (151)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEccCCCCeEEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence            233335665556656667765543211   0011123456666667777888888875

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.64  E-value=0.4  Score=42.98  Aligned_cols=45  Identities=18%  Similarity=0.354  Sum_probs=36.5

Q ss_pred             ccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---cCCce
Q 006041           89 VSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---RSSTT  133 (663)
Q Consensus        89 l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---~~~gT  133 (663)
                      ...+...+.....|++|++.||+.|||=++|++.+|....   ..||+
T Consensus         7 ~~~~~~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~~d~~~GG~   54 (160)
T d2nn5a1           7 LENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELGVNGF   54 (160)
T ss_dssp             EETTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEECSTTCE
T ss_pred             ccCCcEEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCcccccCCCe
Confidence            3345555788889999999999999999999999998775   34554

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=85.05  E-value=0.36  Score=42.00  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             CCcceEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           91 WRERRIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        91 ~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      .+.+.|..+..|+||++.||++|||=++|.+.++
T Consensus         9 ~~~~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~   42 (163)
T d1xuva_           9 PGKQEIIITREFDAPRELVFKAFTDPDLYTQWIG   42 (163)
T ss_dssp             TTCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCS
T ss_pred             CCCceEEEEEEeCCCHHHHHHHHcChHHhhhccC
Confidence            3445688888999999999999999999999875

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=82.27  E-value=0.41  Score=40.58  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=26.0

Q ss_pred             eEEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           95 RIKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      .|...-.|+||++.||++|||-+.+++.++
T Consensus         3 ti~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~   32 (143)
T d1z94a1           3 TIRLHRVLSAPPERVYRAFLDPLALAKWLP   32 (143)
T ss_dssp             CEEEEEEESSCHHHHHHHTTCHHHHHHHSS
T ss_pred             EEEEEEEECCCHHHHHHHhcCHHHHhhhhC
Confidence            456667899999999999999999999754

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=80.25  E-value=0.51  Score=39.86  Aligned_cols=29  Identities=10%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             EEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041           96 IKAEMLVNADVDSVWNALTDYERLADFVP  124 (663)
Q Consensus        96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP  124 (663)
                      |..+..|+||++.||+++||-++|.+.++
T Consensus         3 l~i~r~i~a~~e~Vw~a~tdp~~l~~W~~   31 (143)
T d3elia1           3 LRLEREFAVAPEALFAWVSDGAKLLQWWG   31 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHCS
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhcC
Confidence            55667899999999999999999999763