Citrus Sinensis ID: 006047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 663 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T0A0 | 666 | Long chain acyl-CoA synth | yes | no | 0.969 | 0.965 | 0.755 | 0.0 | |
| Q9T009 | 666 | Long chain acyl-CoA synth | no | no | 0.974 | 0.969 | 0.729 | 0.0 | |
| Q9C7W4 | 665 | Long chain acyl-CoA synth | no | no | 0.975 | 0.972 | 0.697 | 0.0 | |
| Q9XIA9 | 665 | Long chain acyl-CoA synth | no | no | 0.980 | 0.977 | 0.538 | 0.0 | |
| O22898 | 660 | Long chain acyl-CoA synth | no | no | 0.969 | 0.974 | 0.497 | 0.0 | |
| Q8LKS5 | 700 | Long chain acyl-CoA synth | no | no | 0.914 | 0.865 | 0.403 | 1e-130 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.924 | 0.874 | 0.415 | 1e-130 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.904 | 0.899 | 0.403 | 1e-122 | |
| O88813 | 683 | Long-chain-fatty-acid--Co | yes | no | 0.892 | 0.866 | 0.402 | 1e-118 | |
| Q8JZR0 | 683 | Long-chain-fatty-acid--Co | yes | no | 0.892 | 0.866 | 0.397 | 1e-117 |
| >sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/643 (75%), Positives = 568/643 (88%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY+ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN MLG
Sbjct: 6 KYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLG 65
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
+REIVDGK GKYVW+TY+EVYD+V+K+ N++R+ GV++ KCGIYG N PEWII MEACN
Sbjct: 66 RREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN 125
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGA AVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF V
Sbjct: 126 AHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGV 185
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 186 SREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
E+IVT IAGV LL+S NE LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRGDVK
Sbjct: 246 ESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVK 305
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+ED+ ELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF +KKG H
Sbjct: 306 LLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSH 365
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
VEASP+ DK+VF KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE+CA
Sbjct: 366 VEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCA 425
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+ST RGE+C++G T+FSGYYKR
Sbjct: 426 GTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKR 485
Query: 485 EDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAI 544
EDLTKEV++DGW HTGD+GEWQPDGS+KIIDRKKNIFKLSQGEYVAVEN+ENIY V A+
Sbjct: 486 EDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAV 545
Query: 545 DSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAK 604
DSVWVYGNSFESFL+AI NPN+ LERWAAENGV+GD+ +LC+N KAKEFILGEL ++AK
Sbjct: 546 DSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMAK 605
Query: 605 EKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
EKK+KGFE IKA+HL+PVPFD+ERDLLTPT+KKKRPQLLK+YQ
Sbjct: 606 EKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQ 648
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1029 bits (2661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/646 (72%), Positives = 558/646 (86%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
S +++ EVE AKEA+ G PS+GPVYRS FA++GFP PI G++SCWD+FR AVE+ PNNR
Sbjct: 3 SQKRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNR 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REI +GKAGKYVWKTYKEVYD+VIK+ N++R+CG++E KCGIYG+NC EWII ME
Sbjct: 63 MLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII H+ VSIAFVEEKKIPE+ KT P +T+++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
VKPEQ+EE EK GL ++SWDEFL+LGE KQ++LP+KK +DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT GV L +VN L+ +DVY+SYLPLAH+FDRAIEE I G +IGFWRG
Sbjct: 243 ISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKP+IFCAVPRVLDR+Y+GL QK+S GG KK +F++A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HV ASP DK+VF+KVKQ GG VR+ILSGAAPL H+E+FLRVVAC +VLQGYGLTE
Sbjct: 363 QSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTF + P+E+ M+GTVGPPVPNVD+ LESVPEM YDAL STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALV 541
YKREDLTKEV +DGW HTGD+GEWQP+GS+KIIDRKKNIFKL+QGEYVAVENLEN+Y+ V
Sbjct: 483 YKREDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQV 542
Query: 542 SAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601
I+S+WVYGNSFESFLVAI NP + LERWA ENGVNGDF S+C+N KAK FILGEL +
Sbjct: 543 EVIESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVK 602
Query: 602 VAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
AKE KLKGFE IK VHLEPV FD+ERDLLTPTYKKKRPQLLK+YQ
Sbjct: 603 TAKENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQ 648
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/648 (69%), Positives = 558/648 (86%), Gaps = 1/648 (0%)
Query: 1 MSNMKYVVEVEKAKEA-SGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPN 59
M+ +Y+VEVEK K+ GG PS+GPVYRS++AKDGFP P + S WD+FR++VE++PN
Sbjct: 1 MATGRYIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPN 60
Query: 60 NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
N MLG+REIVDGKAGKYVW+TYKEV+++VIK+ N+IRT GV + KCGIYG N PEWII
Sbjct: 61 NPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIIS 120
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179
MEACNA GL+CVPLYDTLGAGA+EFIICH+ VS+AF EE KI E+LKT PK+T++LK IV
Sbjct: 121 MEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIV 180
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
SF +V QR E E++ L +YSWD+FL+LGE K ++LP K+++D+CTIMYTSGTTGDPKG
Sbjct: 181 SFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKG 240
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299
V+++NE+I+ + GVK LL++++E+LTS+DVY+SYLPLAHIFDR IEE+ I A+IGFW
Sbjct: 241 VLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFW 300
Query: 300 RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359
RGDVK+L+EDI LKPT+FCAVPRVL+RIY+GL QK+S GG +KK LFN A+ YK N++
Sbjct: 301 RGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNME 360
Query: 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
KG H +ASPIADKIVF KVK+ GG VRLILSGAAPL H+E+FLRVVACAHVLQGYGL
Sbjct: 361 KGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGL 420
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
TE+C GTFVS+PNE+SM+GTVGPPVPNVD+ LESVPEM YDAL+S PRGE+C++G T+FS
Sbjct: 421 TESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFS 480
Query: 480 GYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYA 539
GYYKREDLT+EV +DGW HTGD+GEWQPDG++KIIDRKKNIFKLSQGEYVAVENLENIY+
Sbjct: 481 GYYKREDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYS 540
Query: 540 LVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEL 599
V+AI+S+WVYGNS+ES+LVA+V P+K +E WA E+ V+GDF+S+C N K KEF+LGE
Sbjct: 541 HVAAIESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEF 600
Query: 600 SRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
+RVAK+KKLKGFE IK VHL+ VPFD+ERDL+TP+YK KRPQLLK+YQ
Sbjct: 601 NRVAKDKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQ 648
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/652 (53%), Positives = 479/652 (73%), Gaps = 2/652 (0%)
Query: 7 VVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQR 66
V+ VE+ + A+ PS GPVYR +AKDG ++S W F AV++ PN +MLGQR
Sbjct: 8 VLLVEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQR 67
Query: 67 EIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNAL 126
D K G Y W TYKE +D I++ +AIR+ GV+ CGIYG NCPEWII MEAC +
Sbjct: 68 VTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQ 127
Query: 127 GLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
G+ VPLYD+LG AVEFII H+ VS+ FV+EK + +L + +LKTIVSF +V
Sbjct: 128 GITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSS 187
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
Q+EE + ++++SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++N
Sbjct: 188 TQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAA 247
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
I + + +LE + + DV+ SYLPLAH +D+ +E F+S G+++G+WRGD++ L
Sbjct: 248 ISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYL 307
Query: 307 LEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVE 366
++D+ LKPT+FC VPRV D++Y+G+ QKIS+ GL++K LF+ AY+YK N++KG E
Sbjct: 308 MDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEE 367
Query: 367 ASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT 426
ASP D+++FDK+K++ GGR ++LSGAAPL HVE FLR++ +++ QGYGLTE+C G+
Sbjct: 368 ASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGS 427
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-TPRGEVCVKGSTVFSGYYKRE 485
F +L SM+GTVG P+P V+ L SVPEM YDA S+ PRGE+C++G+++FSGY+KR+
Sbjct: 428 FTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQ 487
Query: 486 DLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAID 545
DLT +V++DGWFHTGDIGEWQ DGS+KIIDRKKNIFKLSQGEYVAVENLEN Y+ I
Sbjct: 488 DLTDQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIA 547
Query: 546 SVWVYGNSFESFLVAIVNPNKDALERWAAENGVN-GDFKSLCENPKAKEFILGELSRVAK 604
+WVYGNSFESFLV +V P++ A+E WA N + DF+SLC+N KA+++ L EL+ AK
Sbjct: 548 QIWVYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAK 607
Query: 605 EKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSE 656
+ +LKGFE +KA+HLEP PFDIERDL+TPT+K KRPQLL+HY+ ++SE
Sbjct: 608 QYQLKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/643 (49%), Positives = 443/643 (68%)
Query: 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQ 65
+ +VE+ + G+PS+GPVYR+L ++ GFP + + WD+F +VE+ P+N MLG
Sbjct: 4 FAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNMLGW 63
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R IVD K G Y+WKTYKEVY+ V+++ +A+R G E + GIYGVNCP+WII MEAC A
Sbjct: 64 RRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEACAA 123
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
L CVPLYDTLG+GAV++I+ H+ + FV++ KI +L+ K + LK IVSF+ V
Sbjct: 124 HTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTNVS 183
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
E + + G+ YSW +FL +G K D K +ICTIMYTSGT+GDPKGV+++++
Sbjct: 184 DELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLTHQ 243
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
+ TF+ G+ ++ +K+T +DVY+S+LPLAHI DR EE F GA++G++ G++ +
Sbjct: 244 AVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNLNV 303
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
L +DI ELKPT VPRV +RI+ G+ + + ++ +FN Y +K L +G+ H
Sbjct: 304 LRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYSHS 363
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
+ASP+AD I F K++ GGR+RL++SG APL+P +E FLRV C V+QGYGLTET G
Sbjct: 364 KASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETLGG 423
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485
T + P+EM M+GTVG P ++ LE V EM YD L P GE+C++G +FSGYYK
Sbjct: 424 TALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYKNP 483
Query: 486 DLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAID 545
+LT+EVM DGWFHTGDIGE P+G LKIIDRKKN+ KLSQGEYVA+E+LENI+ S +
Sbjct: 484 ELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNSVVQ 543
Query: 546 SVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKE 605
+WVYG+SF+S LVA+V PN + + RWA + G F+ LC P+ KE I+ EL A++
Sbjct: 544 DIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKSTAEK 603
Query: 606 KKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648
KL+ FE+IKAV +E PFD+ERDL+T T K +R LLK+YQV
Sbjct: 604 NKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQV 646
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/619 (40%), Positives = 364/619 (58%), Gaps = 13/619 (2%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AVE N+ LG R DG G+Y W TY E + + + GV
Sbjct: 81 PEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGV 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
+ G+Y +N PEW++ AC A VPLYDTLG AV+F++ H+ + F +
Sbjct: 141 NQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQT 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ +L +F ++ IV G+ + S+ + L G + K
Sbjct: 201 L-NILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPK 259
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
DI TI YTSGTTG PKGV++++ N++ +AG SV + DVY+SYLPLAHI
Sbjct: 260 PEDIATICYTSGTTGTPKGVVLTHGNLIANVAG-----SSVEAEFFPSDVYISYLPLAHI 314
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++RA + + + G A+GF++GDV L++D L+PTIFC+VPR+ +RIY G+ + S G
Sbjct: 315 YERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSG 374
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
++KK LF IAY+ K + G S DK+VF+K+K+ GGRVR + SGA+PL+P
Sbjct: 375 VVKKRLFEIAYNSKKQAIINGRT---PSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPD 431
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460
V FLR+ V +GYG+TET ++ + ++ G VG P P +V L VPEM Y
Sbjct: 432 VMDFLRICFGCSVREGYGMTETSC-VISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYT 490
Query: 461 ALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRKK 518
+ PRGE+CV+G +F GYYK E+ T+E++ DGW HTGDIG W P G LKIIDRKK
Sbjct: 491 SDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKK 550
Query: 519 NIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGV 578
NIFKL+QGEY+A E +EN+Y + +++G+SF S LVAIV+ + + ++ WAA G+
Sbjct: 551 NIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGI 610
Query: 579 NGD-FKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKK 637
+ LC +P+ ++ +L E+ + +E +L+GFEF KAV L P PF +E LLTPT+K
Sbjct: 611 KYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPTFKI 670
Query: 638 KRPQLLKHYQVTFLLVFSE 656
KRPQ ++ +++E
Sbjct: 671 KRPQAKAYFAEAISKMYAE 689
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 260/626 (41%), Positives = 365/626 (58%), Gaps = 13/626 (2%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AV + + LG R VDG G Y W TY E + + + G+
Sbjct: 81 PDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGI 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
GIY +N PEW+I AC++ VPLYDTLG AV+FI+ H+ V F +
Sbjct: 141 PMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAET 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ +L + +V ++ G+ V S+ L G + K
Sbjct: 201 LNSLLSCLSEMPSVRLVVVVGGLIE-SLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ TI YTSGTTG PKGV++++ N++ +AG S + K S DVY+SYLPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISYLPLAHI 314
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++RA + + + G A+GF++GD LL+D+ L+PT+F +VPR+ +RIY+G+ + + G
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
LK+ LFN AY+ K L G ASPI D++VF+K+K GGRVR + SGA+PL+P
Sbjct: 375 GLKERLFNAAYNAKKQALLNGK---SASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY- 459
V FL+V V +GYG+TET + ++ G VG P P +V L VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETSC-VISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYT 490
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKK 518
A PRGE+CV+G +F+GYYK E TKEV+ DGW HTGDIG W P G LKIIDRKK
Sbjct: 491 SADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKK 550
Query: 519 NIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGV 578
NIFKL+QGEY+A E +EN+YA + ++YG+SF S LVA+V+ + D L+ WAA G+
Sbjct: 551 NIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGI 610
Query: 579 -NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKK 637
GD + LC NP+ K +L ++ V +E +L+GFEF KAV L PF +E LLTPT+K
Sbjct: 611 KGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFKI 670
Query: 638 KRPQLLKHYQVTFLLVFSEYSLDETS 663
KRPQ +++ ++ E + S
Sbjct: 671 KRPQAKEYFAEAITNMYKELGASDPS 696
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 253/627 (40%), Positives = 366/627 (58%), Gaps = 27/627 (4%)
Query: 45 SCWDVFRMAVERNPNNRMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
+ +DV+R + ++ ++ LG RE++ DGK G Y W +YK+ + +A+ G+ +
Sbjct: 55 TLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKG 112
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
+ GI+ +N PEW++ A L V LY TLGA A+E+++ HS +S+ E K + +
Sbjct: 113 DRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEK 172
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY----GLAVYSWDEFLQLGENKQFDLPVK 219
+L + P TT +KTIVS+ P + ++K+ + +Y +F +LGE V
Sbjct: 173 IL-SMPGTT--IKTIVSYD---PLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVP 226
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D+CT++YTSG+TG+PKGVM+++ N+V+ +AG V EDV++SYLPLAH
Sbjct: 227 SPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGV----IPEDVHMSYLPLAH 282
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
F+RA+ + G IGF+ G + L DI L+PT C PRV R++ L +++
Sbjct: 283 SFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNND 342
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
LKK LFN + K L+ G +PI DK+VF K K GGRV+ ILSG+APL P
Sbjct: 343 SWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDP 398
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
+ FLR C V+ GYGL+E G V+ P E + +G VGPP+ ++ L VPEM Y
Sbjct: 399 KLAEFLRACFCCPVVSGYGLSENVGGASVAYP-EDNNVGHVGPPLSACEMKLIDVPEMNY 457
Query: 460 DALSS-TPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRK 517
+ PRGEVC++G VF GY+K + TKE + DGWFHTGDIG W +G+L IIDRK
Sbjct: 458 FSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRK 517
Query: 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENG 577
KNIFKLSQGEYVA E LE+++ V+VYG+S SFLV +V P+ + +++ A
Sbjct: 518 KNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKY 577
Query: 578 VNGDFKSLCENPKAKEF---ILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPT 634
D + K+KE IL A E KL GFE +K +++E PF E +LLTP+
Sbjct: 578 PELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPS 637
Query: 635 YKKKRPQLLKHYQVTFLLVFSEYSLDE 661
+K KRPQL + YQ +++EY D
Sbjct: 638 FKPKRPQLKERYQTIIDTLYAEYKRDH 664
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O88813|ACSL5_RAT Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/611 (40%), Positives = 363/611 (59%), Gaps = 19/611 (3%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
++ ++VF+ + + N LG R+ Y W +YK+V D + + + G +
Sbjct: 75 KTLYEVFQRGLAVSDNGPCLGYRK----PNQPYKWISYKQVSDRAEYLGSCLLHKGYKPS 130
Query: 104 GK--CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI 161
GI+ N PEW+I AC + VPLYDTLGA A+ ++I + +S+ + +
Sbjct: 131 QDQFIGIFAQNRPEWVISELACYTYSMVAVPLYDTLGAEAIIYVINRADISVVICDTPQK 190
Query: 162 PEML--KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG-ENKQFDLPV 218
ML T LKT++ + + EK G+ + S + LG EN + +P
Sbjct: 191 ATMLIENVEKDLTPGLKTVILMDPFDDDLMKRGEKCGIEMLSLHDAENLGKENFKKPMP- 249
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
D+ I +TSGTTGDPKG M++++NIV+ +A LE + + T EDV +SYLPLA
Sbjct: 250 PNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNMAAFLKFLEPIFQP-TPEDVTISYLPLA 308
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338
H+F+R ++ V S G IGF++GD++LL +D+ LKPT+F VPR+L+R+Y + + +
Sbjct: 309 HMFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAKT 368
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398
LKK L N+A KF+ ++ G + + + DK+VF K++ S GG+VRL+++GAAP++
Sbjct: 369 P--LKKFLLNLAIISKFNEVRNGI--IRRNSLWDKLVFSKIQSSLGGKVRLMITGAAPIS 424
Query: 399 PHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
V TF R V + YG TE AG ++ P + + G VG PV V LE V +M
Sbjct: 425 TPVLTFFRAAMGCWVFEAYGQTECTAGCSITSPGDWTA-GHVGTPVSCNFVKLEDVADMN 483
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRK 517
Y S GE+C+KG+ VF GY K + T+EV+ DGW HTGDIG W P+G+LKIIDRK
Sbjct: 484 Y--FSVNNEGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRWLPNGTLKIIDRK 541
Query: 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENG 577
KNIFKL+QGEY+A E +EN+Y+ I V+V+G S SFL+ +V P+ ++L +AA+ G
Sbjct: 542 KNIFKLAQGEYIAPEKIENVYSRSRPILQVFVHGESLRSFLIGVVVPDPESLPSFAAKIG 601
Query: 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKK 637
V G F+ LC+N K+ IL +L +V KE LK FE +K++ + P PF IE LLTPT K
Sbjct: 602 VKGSFEELCQNQCVKKAILEDLQKVGKEGGLKSFEQVKSIFVHPEPFSIENGLLTPTLKA 661
Query: 638 KRPQLLKHYQV 648
KR +L K +Q
Sbjct: 662 KRVELAKFFQT 672
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8JZR0|ACSL5_MOUSE Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/611 (39%), Positives = 360/611 (58%), Gaps = 19/611 (3%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
++ ++ F+ + + N LG R+ Y W +YK+V D + + + G +
Sbjct: 75 KTLYENFQRGLAVSDNGPCLGYRK----PNQPYKWISYKQVSDRAEYLGSCLLHKGYKSS 130
Query: 104 GK--CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI 161
GI+ N PEW+I AC + VPLYDTLG A+ F+I + + + + +
Sbjct: 131 QDQFVGIFAQNRPEWVISELACYTYSMVAVPLYDTLGTEAIIFVINRADIPVVICDTPQK 190
Query: 162 PEML--KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
ML T LKTI+ + + EK G+ + S + +G+ + F PV
Sbjct: 191 ATMLVENVEKGLTPGLKTIILMDPFDDDLMKRGEKCGVEMLSLHDAENIGK-ENFKKPVP 249
Query: 220 KK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
K D+ I +TSGTTGDPKG M+++EN+V+ +A LE + + TS+DV +SYLPLA
Sbjct: 250 PKPEDLSVICFTSGTTGDPKGAMLTHENVVSNMAAFLKFLEPIFQP-TSDDVTISYLPLA 308
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338
H+F+R ++ + S G IGF++GD++LL +D+ LKPT+F VPR+L+R+Y + + +
Sbjct: 309 HMFERLVQGILFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAKT 368
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398
LKK L N+A KF+ +K G + + DK+VF K++ S GG+VRL+++GAAP++
Sbjct: 369 P--LKKFLLNLAIISKFNEVKNGI--IRRDSLWDKLVFSKIQGSLGGKVRLMITGAAPIS 424
Query: 399 PHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
V TF R V + YG TE G ++ P + + G VG PV V LE V +M
Sbjct: 425 TPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDWTA-GHVGTPVACNFVKLEDVADMN 483
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRK 517
Y S GE+C+KG+ VF GY K + T+EV+ DGW HTGDIG W P+G+LKI+DRK
Sbjct: 484 Y--FSVNNEGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRWLPNGTLKIVDRK 541
Query: 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENG 577
KNIFKL+QGEY+A E +EN+Y+ + V+V+G S SFL+ +V P+ D+L +AA+ G
Sbjct: 542 KNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIG 601
Query: 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKK 637
V G F+ LC+N KE IL +L ++ KE LK FE +K++ + P PF IE LLTPT K
Sbjct: 602 VKGSFEELCKNQCVKEAILEDLQKIGKEGGLKSFEQVKSIFVHPEPFTIENGLLTPTLKA 661
Query: 638 KRPQLLKHYQV 648
KR +L K +Q
Sbjct: 662 KRVELAKFFQT 672
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL (By similarity). May have a role in the survival of glioma cells (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 663 | ||||||
| 225426350 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.975 | 0.977 | 0.808 | 0.0 | |
| 147810382 | 654 | hypothetical protein VITISV_035299 [Viti | 0.962 | 0.975 | 0.818 | 0.0 | |
| 170676820 | 665 | long-chain acyl-CoA synthetase 4 [Ricinu | 0.969 | 0.966 | 0.808 | 0.0 | |
| 74147576 | 662 | ACS-like protein [Gossypium hirsutum] | 0.975 | 0.977 | 0.799 | 0.0 | |
| 224075096 | 662 | predicted protein [Populus trichocarpa] | 0.975 | 0.977 | 0.795 | 0.0 | |
| 83320523 | 656 | ACS1 [Ricinus communis] | 0.965 | 0.975 | 0.809 | 0.0 | |
| 224053783 | 662 | predicted protein [Populus trichocarpa] | 0.975 | 0.977 | 0.786 | 0.0 | |
| 74147588 | 663 | ACS-like protein [Gossypium hirsutum] | 0.968 | 0.968 | 0.772 | 0.0 | |
| 380042364 | 662 | acyl-activating enzyme 2 [Cannabis sativ | 0.989 | 0.990 | 0.765 | 0.0 | |
| 118489772 | 662 | unknown [Populus trichocarpa x Populus d | 0.975 | 0.977 | 0.780 | 0.0 |
| >gi|225426350|ref|XP_002270385.1| PREDICTED: long chain acyl-CoA synthetase 4 [Vitis vinifera] gi|297742330|emb|CBI34479.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/647 (80%), Positives = 591/647 (91%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ ++++E+EKAKEA GRPSIGPVYRS FA+DGFP PI GMESCWDVFR+AVE+ P N
Sbjct: 1 MAQKRFIIEMEKAKEAKDGRPSIGPVYRSSFARDGFPKPIEGMESCWDVFRLAVEKYPGN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLGQREIV+GKAGKYVW TYKEVYD V+KV N+IR+CGV E G+CGIYG N EWI+ M
Sbjct: 61 RMLGQREIVNGKAGKYVWLTYKEVYDKVMKVGNSIRSCGVNEGGRCGIYGANSAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICHS +SI FVEEKKIPE+LKTFP TTE+LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHSELSIVFVEEKKIPEVLKTFPNTTEYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQREE+EK+GLA+Y W+EFLQLG++K+FDLP+ KKNDICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQREEVEKFGLAIYYWEEFLQLGDDKKFDLPLTKKNDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SNE+IVT IAGVK LL+SVNE+L +DV++SYLPLAHIFDR IEE+FIS+GA+IGFWR
Sbjct: 241 MISNESIVTLIAGVKRLLQSVNEELNEKDVFISYLPLAHIFDRVIEELFISHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKPTIFCAVPRVLDRIYSGL QKIS+GGLL+ TLFNIAY YK +NL K
Sbjct: 301 GDVKLLVEDIGELKPTIFCAVPRVLDRIYSGLKQKISAGGLLRNTLFNIAYKYKQYNLWK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G K +EA+PI DKIVF KVKQ GG VRLILSGAAPL+ HVE +LRVV CAHVLQGYGLT
Sbjct: 361 GVKTLEAAPICDKIVFGKVKQGLGGNVRLILSGAAPLSTHVEAYLRVVTCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+SM+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+FSG
Sbjct: 421 ETCAGTFVSLPNEISMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540
YYKREDLTKEV+VDGWFHTGD+GEWQPDGS+KIIDRKKNIFKLSQGEYVAVENLENIY L
Sbjct: 481 YYKREDLTKEVLVDGWFHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGL 540
Query: 541 VSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELS 600
VS IDS+W+YGNSFESFLVA+ NPN+ ALERWA EN ++GDF SLCENPKAKE+ILGELS
Sbjct: 541 VSDIDSIWIYGNSFESFLVAVANPNQQALERWAKENNISGDFDSLCENPKAKEYILGELS 600
Query: 601 RVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
++ KEKKLKGFEF+KAVHL+PVPFD+ERDL+TPTYKKKRPQLLK+YQ
Sbjct: 601 KIGKEKKLKGFEFVKAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQ 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810382|emb|CAN67631.1| hypothetical protein VITISV_035299 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/638 (81%), Positives = 585/638 (91%)
Query: 10 VEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV 69
+EKAKEA GRPSIGPVYRS FA+DGFP PI GMESCWDVFR+AVE+ P NRMLGQREIV
Sbjct: 1 MEKAKEAKDGRPSIGPVYRSSFARDGFPKPIEGMESCWDVFRLAVEKYPGNRMLGQREIV 60
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129
+GKAGKYVW TYKEVYD V+KV N+IR+CGV E G+CGIYG N EWI+ MEACNA GL+
Sbjct: 61 NGKAGKYVWLTYKEVYDKVMKVGNSIRSCGVNEGGRCGIYGANSAEWIMSMEACNAHGLY 120
Query: 130 CVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR 189
CVPLYDTLGAGAVEFIICHS +SI FVEEKKIPE+LKTFP TTE+LKTIVSF KV PEQR
Sbjct: 121 CVPLYDTLGAGAVEFIICHSELSIVFVEEKKIPEVLKTFPNTTEYLKTIVSFGKVTPEQR 180
Query: 190 EEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT 249
EE+EK+GLA+YSW+EFLQLG++K+FDLP+ KKNDICTIMYTSGTTGDPKGVM+SNE+IVT
Sbjct: 181 EEVEKFGLAIYSWEEFLQLGDDKKFDLPLTKKNDICTIMYTSGTTGDPKGVMISNESIVT 240
Query: 250 FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLED 309
IAGVK LL+SVNE+L +DV++SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKLL+ED
Sbjct: 241 LIAGVKRLLQSVNEELNEKDVFISYLPLAHIFDRVIEELFISHGASIGFWRGDVKLLVED 300
Query: 310 IGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASP 369
IGELKPTIFCAVPRVLDRIYSGL QKIS+GGLL+ TLFNIAY YK +NL KG K +EA+P
Sbjct: 301 IGELKPTIFCAVPRVLDRIYSGLKQKISAGGLLRNTLFNIAYKYKQYNLWKGVKTLEAAP 360
Query: 370 IADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429
I DKIVF KVKQ GG VRLILSGAAPL+ HVE +LRVV CAHVLQGYGLTETCAGTFVS
Sbjct: 361 ICDKIVFGKVKQGLGGNVRLILSGAAPLSTHVEAYLRVVTCAHVLQGYGLTETCAGTFVS 420
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
LPNE+SM+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+FSGYYKREDLTK
Sbjct: 421 LPNEISMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFSGYYKREDLTK 480
Query: 490 EVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWV 549
EV+VDGWFHTGD+GEWQPDGS+KIIDRKKNIFKLSQGEYVAVENLENIY LVS IDS+W+
Sbjct: 481 EVLVDGWFHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGLVSDIDSIWI 540
Query: 550 YGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609
YGNSFESFLVA+ NPN+ ALERWA EN ++GDF SLCENPKAKE+ILGELS++ KEKKLK
Sbjct: 541 YGNSFESFLVAVANPNQQALERWAKENNISGDFDSLCENPKAKEYILGELSKIGKEKKLK 600
Query: 610 GFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
GFEF+KAVHL+PVPFD+ERDL+TPTYKKKRPQLLK+YQ
Sbjct: 601 GFEFVKAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQ 638
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|170676820|gb|ACB30545.1| long-chain acyl-CoA synthetase 4 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/643 (80%), Positives = 586/643 (91%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY++EVEKAKEA G+PS+GPVYRSLFAKDGFP PIPG++SCWDVFRM+VE+ PNN MLG
Sbjct: 8 KYLIEVEKAKEAKDGKPSVGPVYRSLFAKDGFPPPIPGLDSCWDVFRMSVEKYPNNPMLG 67
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
RE V+GKAGKYVW+TYK+VYDLVIKV NAIR+CGVE KCGIYG N EWI+ MEACN
Sbjct: 68 HREFVNGKAGKYVWQTYKQVYDLVIKVGNAIRSCGVEPGEKCGIYGANSAEWIMSMEACN 127
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGAGAVE+IICH+ VSIAFVEEKKIPE+LKTFP +++KTIVSF +
Sbjct: 128 AHGLYCVPLYDTLGAGAVEYIICHAEVSIAFVEEKKIPELLKTFPSAAQYIKTIVSFGNI 187
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQREE+EK+GL YSW++FL+LGENKQ+DLP KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 188 AREQREEMEKFGLVAYSWEDFLKLGENKQYDLPEKKKSDICTIMYTSGTTGDPKGVMISN 247
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
++IVT IAGV+ LLESVNE+LTSEDVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVK
Sbjct: 248 DSIVTIIAGVRRLLESVNEQLTSEDVYLSYLPLAHIFDRVIEELFISHGASIGFWRGDVK 307
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+EDIGELKPTIFCAVPRVLDRI+SGL QKISSGG LK LFN+AYSYK +KKG H
Sbjct: 308 LLIEDIGELKPTIFCAVPRVLDRIHSGLTQKISSGGFLKNKLFNLAYSYKLSCMKKGLAH 367
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
EASP++DK+VFDKVKQ GG+VRLILSGAAPL HVE FLRVV+CAHVLQGYGLTETCA
Sbjct: 368 DEASPLSDKLVFDKVKQGLGGKVRLILSGAAPLAIHVEAFLRVVSCAHVLQGYGLTETCA 427
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLPNEM+M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+CV+GSTVF+GYYKR
Sbjct: 428 GTFVSLPNEMAMLGTVGPPVPNVDVCLESVPEMNYDALSSTPRGEICVRGSTVFAGYYKR 487
Query: 485 EDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAI 544
EDLTKEV++DGWFHTGDIGEWQ DGSLKIIDRKKNIFKLSQGEYVAVENLENIY L S +
Sbjct: 488 EDLTKEVLIDGWFHTGDIGEWQADGSLKIIDRKKNIFKLSQGEYVAVENLENIYGLASDV 547
Query: 545 DSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAK 604
DS+WVYGNSFESFLVA+VNPNK ALE WA EN V+GDFKSLCENP+AK++I+GEL+++ K
Sbjct: 548 DSIWVYGNSFESFLVAVVNPNKQALEHWAQENSVDGDFKSLCENPRAKQYIIGELTKIGK 607
Query: 605 EKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
EKKLKGFE IKAVHL+P PFDIERDLLTPTYKKKRPQLLK+YQ
Sbjct: 608 EKKLKGFESIKAVHLDPEPFDIERDLLTPTYKKKRPQLLKYYQ 650
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74147576|gb|ABA00144.1| ACS-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/647 (79%), Positives = 593/647 (91%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ +V+EVEK K+AS G+PSIGPVYRS FA +GFPAPIPGMESCWD+FRM+VE+ P+N
Sbjct: 1 MAGNNFVIEVEKGKDASDGQPSIGPVYRSSFAANGFPAPIPGMESCWDIFRMSVEKYPDN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLG+R+IVDGKAGKYVW+TY+EVYD+VIKV N+IR+C V E GKCGIYG NCPEWII M
Sbjct: 61 RMLGRRQIVDGKAGKYVWQTYREVYDIVIKVGNSIRSCDVVEGGKCGIYGANCPEWIISM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICH+ +SIAFVEEKKI E+ KTFP +TEHLKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHAEISIAFVEEKKINELFKTFPASTEHLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQ+ E EK+GL +Y W+EFLQLGENK + LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQKAEAEKHGLKIYPWEEFLQLGENKNYGLPVKKKTDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
+SN++IVT IAGVK LL SVNE+LT +DVY+SYLPLAHIFDR IEE+FIS+GA+IGFWR
Sbjct: 241 FISNDSIVTLIAGVKRLLGSVNEQLTMKDVYISYLPLAHIFDRVIEELFISHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKP+IFCAVPRVLDRIYSGL QKIS+GGLLKK +F++AY+YK++N+KK
Sbjct: 301 GDVKLLVEDIGELKPSIFCAVPRVLDRIYSGLLQKISAGGLLKKKMFDLAYTYKYYNMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G KH EASPI DKIVF KVKQ GG VRLILSGAAPL+ HVE FLRVVAC HVLQGYGLT
Sbjct: 361 GRKHGEASPICDKIVFSKVKQGLGGNVRLILSGAAPLSTHVEEFLRVVACCHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
E+CAG+FVSLPNE+SM+GTVGPPVPN+DV LESVPEM YDAL+STPRGE+C+KG+T+FSG
Sbjct: 421 ESCAGSFVSLPNELSMLGTVGPPVPNIDVRLESVPEMNYDALASTPRGEICIKGNTLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540
YYKREDLT+EV++DGWFHTGDIGEWQP+GS+KIIDRKKNIFKLSQGEYVAVENLENIY L
Sbjct: 481 YYKREDLTREVLIDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIYGL 540
Query: 541 VSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELS 600
VSAIDS+W+YGNSFESFLVA+VNPNK+ALE WAA+N V+GDF+SLC+NPKAKEFILGEL+
Sbjct: 541 VSAIDSIWIYGNSFESFLVAVVNPNKEALESWAADNNVSGDFESLCKNPKAKEFILGELA 600
Query: 601 RVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
+ KEKKLKGFE IKAVHL+P+PFD+ERDLLTPTYKKKRPQLLK+YQ
Sbjct: 601 KTGKEKKLKGFEIIKAVHLDPMPFDMERDLLTPTYKKKRPQLLKYYQ 647
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075096|ref|XP_002304555.1| predicted protein [Populus trichocarpa] gi|222841987|gb|EEE79534.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/647 (79%), Positives = 594/647 (91%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ KY++EVEKAKEA G+PSIGPVYRSLFAKDGFP P+PG+ESCWDVFRM+VE+ PNN
Sbjct: 1 MAPRKYLIEVEKAKEAKDGKPSIGPVYRSLFAKDGFPPPVPGLESCWDVFRMSVEKYPNN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG+REIV+GKAGKYVW+TYK+VYD+VIKV N+IR+CGVE KCGIYG NC EWI+ M
Sbjct: 61 PMLGRREIVNGKAGKYVWQTYKQVYDVVIKVGNSIRSCGVEPGAKCGIYGANCAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGA AVEFIICHS VSIAFVEE KI E+LKTFP +T++LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGASAVEFIICHSEVSIAFVEENKICELLKTFPNSTQYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV +++EEIEK GLAVYSWDEFL+LGENKQ++LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVALKEQEEIEKSGLAVYSWDEFLKLGENKQYELPVKKKEDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
++SN++IVT IAGVK LLESV E LTSEDVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 LISNDSIVTLIAGVKRLLESVKESLTSEDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKPTIFCAVPRVL+R+YSGL QK+S+GG LKKTLFN+AYS+KF ++KK
Sbjct: 301 GDVKLLIEDIGELKPTIFCAVPRVLERVYSGLQQKVSTGGFLKKTLFNVAYSHKFSSMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G H +ASPI DKIVF+KV+Q GG+VRLILSGAAPL+ HVE FLRVV+CAHVLQGYGLT
Sbjct: 361 GLAHHQASPICDKIVFNKVRQGLGGKVRLILSGAAPLSNHVEAFLRVVSCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+F+G
Sbjct: 421 ETCAGTFVSLPNELPMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540
YYKREDLT+EV+ DGWFHTGDIGEWQPDGS+KIIDRKKNIFKLSQGEYVAVENLENIY+L
Sbjct: 481 YYKREDLTEEVLNDGWFHTGDIGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYSL 540
Query: 541 VSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELS 600
VS IDS+WVYGNSFESFLVA+ NPN+ ALE WA E+G++GDFK+LCENP+AKE++LGEL+
Sbjct: 541 VSDIDSIWVYGNSFESFLVAVANPNQQALEHWAQEHGISGDFKALCENPRAKEYMLGELT 600
Query: 601 RVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
++ KEKKLKGFEFIKA+HL+P PFD+ERDL+TPTYKKKRPQLLK+YQ
Sbjct: 601 KIGKEKKLKGFEFIKAIHLDPEPFDMERDLITPTYKKKRPQLLKYYQ 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83320523|gb|ABC02880.1| ACS1 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/640 (80%), Positives = 583/640 (91%)
Query: 8 VEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQRE 67
+EVEKAKEA G+PS+GPVYRSLFAKDGFP PIPG++SCWDVFRM+VE+ PNN MLG RE
Sbjct: 2 IEVEKAKEAKDGKPSVGPVYRSLFAKDGFPPPIPGLDSCWDVFRMSVEKYPNNPMLGHRE 61
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
V+GKAGKYVW+TYK+VYDLVIKV NAIR+CGVE KCGIYG N EWI+ MEACNA G
Sbjct: 62 FVNGKAGKYVWQTYKQVYDLVIKVGNAIRSCGVEPGEKCGIYGANSAEWIMSMEACNAHG 121
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
L+CVPLYDTLGAGAVE+IICH+ VSIAFVEEKKIPE+LKTFP +++KTIVSF + E
Sbjct: 122 LYCVPLYDTLGAGAVEYIICHAEVSIAFVEEKKIPELLKTFPSAAQYIKTIVSFGNIARE 181
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
QREE+EK+GL YSW++FL+LGENKQ+DLP KKK+DICTIMYTSGTTGDPKGVM+SN++I
Sbjct: 182 QREEMEKFGLVAYSWEDFLKLGENKQYDLPEKKKSDICTIMYTSGTTGDPKGVMISNDSI 241
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLL 307
VT IAGV+ LLESVNE+LTSEDVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKLL+
Sbjct: 242 VTIIAGVRRLLESVNEQLTSEDVYLSYLPLAHIFDRVIEELFISHGASIGFWRGDVKLLI 301
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
EDIGELKPTIFCAVPRVLDRI+SGL QKISSGG LK LFN+AYSYK +KKG H EA
Sbjct: 302 EDIGELKPTIFCAVPRVLDRIHSGLTQKISSGGFLKNKLFNLAYSYKLSCMKKGLAHDEA 361
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTF 427
SP++DK+VFDKVKQ GG+VRLILSGAAPL HVE FLRVV+CAHVLQGYGLTETCAGTF
Sbjct: 362 SPLSDKLVFDKVKQGLGGKVRLILSGAAPLAIHVEAFLRVVSCAHVLQGYGLTETCAGTF 421
Query: 428 VSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
VSLPNEM+M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+CV+GSTVF+GYYKREDL
Sbjct: 422 VSLPNEMAMLGTVGPPVPNVDVCLESVPEMNYDALSSTPRGEICVRGSTVFAGYYKREDL 481
Query: 488 TKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSV 547
TKEV++DGWFHTGDIGEWQ DGSLKIIDRKKNIFKLSQGEYVAVENLENIY L S +DS+
Sbjct: 482 TKEVLIDGWFHTGDIGEWQADGSLKIIDRKKNIFKLSQGEYVAVENLENIYGLASDVDSI 541
Query: 548 WVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKK 607
WVYGNSFESFLVA+VNPNK ALE WA EN V+GDFKSLCENP+AK++I+GEL+++ KEKK
Sbjct: 542 WVYGNSFESFLVAVVNPNKQALEHWAQENSVDGDFKSLCENPRAKQYIIGELTKIGKEKK 601
Query: 608 LKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
LKGFE IKAVHL+P PFDIERDLLTPTYKKKRPQLLK+YQ
Sbjct: 602 LKGFESIKAVHLDPEPFDIERDLLTPTYKKKRPQLLKYYQ 641
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053783|ref|XP_002297977.1| predicted protein [Populus trichocarpa] gi|222845235|gb|EEE82782.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/647 (78%), Positives = 587/647 (90%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M KY+VEVEKAKEA GRPS GPVYRSLFAKDGFP P+PG+ESCWD+FRM+VE+ PNN
Sbjct: 1 MEQRKYLVEVEKAKEAIDGRPSTGPVYRSLFAKDGFPPPVPGLESCWDIFRMSVEKYPNN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG REIV+GKAG YVW+TYK+VYD V++V N+IR+CGVE KCGIYG NC EW++ M
Sbjct: 61 PMLGCREIVNGKAGNYVWQTYKQVYDTVVQVGNSIRSCGVEPGAKCGIYGANCAEWVMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGA AVEFIICHS VSIAFVEEKKI E+LKTFP +T+++KTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGADAVEFIICHSEVSIAFVEEKKITELLKTFPNSTQYMKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV +++EEIEK+GLAVYSWDEFL LGENKQ++LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVASKEKEEIEKFGLAVYSWDEFLNLGENKQYELPVKKKEDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SN++IVT +AGVK LLESVNE LTS+DVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 MISNDSIVTLLAGVKRLLESVNEALTSKDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLLLEDIGELKP+IFCAVPRVLDR+YSGL QK+S+GG L KTLFN+AYS+KF ++KK
Sbjct: 301 GDVKLLLEDIGELKPSIFCAVPRVLDRVYSGLQQKVSTGGFLTKTLFNLAYSHKFSSMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G H EASPI DKIVF+KV+Q GG VRLILSGAAPL+ HVE FLRVV+CAHVLQGYGLT
Sbjct: 361 GFAHDEASPICDKIVFNKVRQGLGGNVRLILSGAAPLSNHVEAFLRVVSCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDV LESVPEM YDALSSTPRGE+C++G T+F+G
Sbjct: 421 ETCAGTFVSLPNELPMLGTVGPPVPNVDVFLESVPEMGYDALSSTPRGEICIRGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540
YYKREDLTKEV++DGWFHTGDIGEWQPDGS+KIIDRKKNIFKLSQGEYVAVENLENIY+L
Sbjct: 481 YYKREDLTKEVLIDGWFHTGDIGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYSL 540
Query: 541 VSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELS 600
VS IDS+WVYGNSFESFL+A+ NPN+ ALE WA E+G++G+FKSLCENP+AK+FILGEL+
Sbjct: 541 VSDIDSIWVYGNSFESFLIAVANPNQQALEHWAQEHGISGNFKSLCENPEAKKFILGELT 600
Query: 601 RVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
++ KEKKLKGFE +K VHL+P PFD+ER+L+TPTYKKKRPQLLK+YQ
Sbjct: 601 KIGKEKKLKGFELVKDVHLDPEPFDMERNLITPTYKKKRPQLLKYYQ 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74147588|gb|ABA00145.1| ACS-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/642 (77%), Positives = 587/642 (91%)
Query: 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQ 65
Y+++VE+ K A+ RPSIGPVYRS FA++GFPAPIPGMESCWD+FRM+VE+ PN+ MLG
Sbjct: 7 YIIKVEEGKAATDERPSIGPVYRSCFAENGFPAPIPGMESCWDIFRMSVEKYPNHHMLGH 66
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R+IVDGKAGKYVW+TYK+VYD+V+KV N+IR+CGVEE GKCGIYG NCPEWI+ MEACNA
Sbjct: 67 RQIVDGKAGKYVWQTYKQVYDIVMKVGNSIRSCGVEEGGKCGIYGANCPEWIMTMEACNA 126
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
GL CVPLYDTLGA AVEFIICH+ VSIAFVEEKKI E+ KTFP +T++L+TI+SF KV
Sbjct: 127 HGLSCVPLYDTLGADAVEFIICHAEVSIAFVEEKKIAELFKTFPNSTKYLRTIISFGKVT 186
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
PEQ+ E EK GLA+++W+EFLQLGENKQ+DLP+KKK DICTIMYTSGTTGDPKGV++SNE
Sbjct: 187 PEQKAEAEKQGLAIFTWEEFLQLGENKQYDLPIKKKTDICTIMYTSGTTGDPKGVLISNE 246
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
+I+T +A V CLL VNE+LT DVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKL
Sbjct: 247 SIITLLAAVDCLLGRVNEELTMNDVYISYLPLAHIFDRVIEELFISHGASIGFWRGDVKL 306
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
LLEDIGELKP++FCAVPRVLDRIYSGL QKIS GGLLKKTLFN+AYS+KF+N++ G KH
Sbjct: 307 LLEDIGELKPSVFCAVPRVLDRIYSGLQQKISEGGLLKKTLFNVAYSFKFYNMRNGSKHA 366
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
EASP +D+IVF +VK+ GG +R+ILSGAAPL+ HVE FLRVVAC HV+QGYGLTETCAG
Sbjct: 367 EASPFSDRIVFSQVKERLGGNLRIILSGAAPLSSHVEEFLRVVACCHVMQGYGLTETCAG 426
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485
TFVSLP+E+SM+GTVGPPVPNVDV LESVPEM YDAL+STPRGE+C+KG+T+FSGY+KRE
Sbjct: 427 TFVSLPHELSMLGTVGPPVPNVDVRLESVPEMGYDALASTPRGEICLKGTTLFSGYFKRE 486
Query: 486 DLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAID 545
DLTKEVM+DGWFHTGDIGEWQP+GS+K+IDRKKNIFKLSQGEYVAVENLEN+Y VS I+
Sbjct: 487 DLTKEVMIDGWFHTGDIGEWQPNGSMKVIDRKKNIFKLSQGEYVAVENLENVYGCVSDIE 546
Query: 546 SVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKE 605
S+WVYGNSFES+LVA+VNPNK ALERWAA+NGV+GDF+++C++PKAKE+ILGEL+R KE
Sbjct: 547 SIWVYGNSFESYLVAVVNPNKQALERWAADNGVSGDFETICKDPKAKEYILGELTRTGKE 606
Query: 606 KKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
K+LKGFEFIKAVHL+ VPFD++RDLLTPT+KKKRPQLLK+YQ
Sbjct: 607 KQLKGFEFIKAVHLDHVPFDMDRDLLTPTFKKKRPQLLKYYQ 648
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042364|gb|AFD33346.1| acyl-activating enzyme 2 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/656 (76%), Positives = 585/656 (89%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ K++ EVEKAKEA GRPS+GPVYRS++AKDGFP PI G++ CWDVFR++VERNP N
Sbjct: 1 MAQKKFIFEVEKAKEAKDGRPSMGPVYRSMYAKDGFPPPIDGLDCCWDVFRLSVERNPGN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
+MLG+RE+VDGKAGKYVW+TYKEVYD VIK+ NA+R+CG E KCGIYG NC EWI+ M
Sbjct: 61 KMLGRREVVDGKAGKYVWQTYKEVYDCVIKLGNAMRSCGFGEGDKCGIYGANCSEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
+ACNA GL+CVPLYDTLGA A+EF+I H+ V+IAF EEKK+PE+LKT P TT++LKT+VS
Sbjct: 121 QACNAHGLYCVPLYDTLGANAIEFVIKHAEVTIAFAEEKKLPELLKTLPNTTDYLKTLVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQRE +EK+GL +YSW+EFLQLG+ K FDLPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQRESVEKFGLKIYSWEEFLQLGDCKDFDLPVKKKTDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
++SNE+I++ +AGV+ LLESVNEKLT +DV++SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 LISNESIISLLAGVRRLLESVNEKLTEKDVFLSYLPLAHIFDRVIEELFILHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLLLEDIGELKPTIFCAVPRVLDR+Y+GL QKIS+GG LKKTLFN AYS K++N++K
Sbjct: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRVYAGLTQKISAGGFLKKTLFNFAYSRKYNNMRK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G KH +A+P+ DKIVF KVKQ GG VRLILSGAAPL PHVE +LRVV CAHV QGYGLT
Sbjct: 361 GLKHGDAAPLCDKIVFSKVKQGLGGNVRLILSGAAPLAPHVEAYLRVVTCAHVCQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVS+PNE+ M+GTVGPPVPNVDVCLESVPEM YDAL+ PRGEVCVKGST+FSG
Sbjct: 421 ETCAGTFVSIPNELPMLGTVGPPVPNVDVCLESVPEMGYDALAEVPRGEVCVKGSTLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540
YYKREDLTKEVM+DGWFHTGD+GEWQ DGSLKIIDRKKNIFKLSQGEYVAVENLENIY L
Sbjct: 481 YYKREDLTKEVMIDGWFHTGDVGEWQADGSLKIIDRKKNIFKLSQGEYVAVENLENIYGL 540
Query: 541 VSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELS 600
VS IDS+WVYGNSFESFLVA++NPN+ ALERWA EN ++GDFKS+CENP+AKE+ILGEL+
Sbjct: 541 VSDIDSIWVYGNSFESFLVAVINPNQQALERWAGENNISGDFKSICENPRAKEYILGELN 600
Query: 601 RVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSE 656
++ KEKKLKGFEFI+AVHL+P FDIERDL+TPTYKKKRPQLLK+YQ ++ E
Sbjct: 601 KIGKEKKLKGFEFIRAVHLDPEAFDIERDLITPTYKKKRPQLLKYYQSVIDNMYKE 656
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489772|gb|ABK96686.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/647 (78%), Positives = 584/647 (90%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M KY+VEVEKAKEA G+PS GPVYRSLFAKDGFP P+PG+ESCWD+FRM+VE+ PNN
Sbjct: 1 MEQRKYLVEVEKAKEAIDGKPSTGPVYRSLFAKDGFPPPVPGLESCWDIFRMSVEKYPNN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG REIV+GKAG YVW+TYK+VYD V++V N+IR+CGVE KCGIYG NC EW++ M
Sbjct: 61 PMLGCREIVNGKAGNYVWQTYKQVYDTVVQVGNSIRSCGVEPGAKCGIYGANCAEWVMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGA AVEFIICHS VSIAFVEEKKI E+LKTFP +T+++KTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGADAVEFIICHSEVSIAFVEEKKITELLKTFPNSTQYMKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV +++EEIEK+GLAVYSWDEFL+LGENKQ++LPVKKK DICTIMYTSGTTG PKGV
Sbjct: 181 FGKVASKEKEEIEKFGLAVYSWDEFLKLGENKQYELPVKKKEDICTIMYTSGTTGYPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SN++IVT +AGVK LLESVNE LTS+DVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 MISNDSIVTLLAGVKRLLESVNEALTSKDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLLLEDIGELKP+IFCAVPRVL+R+YSGL QK+S+GG L KTLFN+AYS+KF ++K
Sbjct: 301 GDVKLLLEDIGELKPSIFCAVPRVLERVYSGLQQKVSTGGFLTKTLFNLAYSHKFRSMKM 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G H EASPI DK VF+KV+Q GG VRLILSGAAPL+ HVE FLRVV+CAHVLQGYGLT
Sbjct: 361 GFAHDEASPICDKFVFNKVRQGLGGNVRLILSGAAPLSNHVEAFLRVVSCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDV LESVPEM YDALSSTPRGE+C++G T+F+G
Sbjct: 421 ETCAGTFVSLPNELPMLGTVGPPVPNVDVFLESVPEMGYDALSSTPRGEICIRGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540
YYKREDLTKEV++DGWFHTGDIGEWQPDGS+KIIDRKKNIFKLSQGEYVAVENLENIY+L
Sbjct: 481 YYKREDLTKEVLIDGWFHTGDIGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYSL 540
Query: 541 VSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELS 600
VS IDS+WVYGNSFESFLVA+ NPN+ AL WA E+G++G+FKSLCENP+AK+FILGEL+
Sbjct: 541 VSDIDSIWVYGNSFESFLVAVANPNQQALGHWAQEHGISGNFKSLCENPEAKKFILGELT 600
Query: 601 RVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
++ KEKKLKGFE +K VHL+P PFD+ERDL+TPTYKKKRPQLLK+YQ
Sbjct: 601 KIGKEKKLKGFELVKDVHLDPEPFDMERDLITPTYKKKRPQLLKYYQ 647
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 663 | ||||||
| TAIR|locus:2138141 | 666 | LACS4 "long-chain acyl-CoA syn | 0.969 | 0.965 | 0.755 | 7.5e-279 | |
| TAIR|locus:2136148 | 666 | AT4G11030 [Arabidopsis thalian | 0.974 | 0.969 | 0.729 | 6.4e-273 | |
| TAIR|locus:2014265 | 665 | LACS3 "long-chain acyl-CoA syn | 0.975 | 0.972 | 0.697 | 2.3e-261 | |
| TAIR|locus:2010177 | 665 | LACS2 "long-chain acyl-CoA syn | 0.978 | 0.975 | 0.539 | 2.9e-197 | |
| TAIR|locus:2065195 | 660 | LACS1 "AT2G47240" [Arabidopsis | 0.971 | 0.975 | 0.500 | 9e-180 | |
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.923 | 0.873 | 0.417 | 3.9e-124 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.912 | 0.864 | 0.406 | 8.3e-122 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.903 | 0.898 | 0.405 | 7.1e-116 | |
| UNIPROTKB|Q1LZF6 | 683 | ACSL5 "Acyl-CoA synthetase lon | 0.888 | 0.862 | 0.4 | 2.4e-115 | |
| FB|FBgn0036821 | 704 | CG3961 [Drosophila melanogaste | 0.889 | 0.838 | 0.406 | 6.4e-115 |
| TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2680 (948.5 bits), Expect = 7.5e-279, P = 7.5e-279
Identities = 486/643 (75%), Positives = 568/643 (88%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY+ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN MLG
Sbjct: 6 KYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLG 65
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
+REIVDGK GKYVW+TY+EVYD+V+K+ N++R+ GV++ KCGIYG N PEWII MEACN
Sbjct: 66 RREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN 125
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGA AVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF V
Sbjct: 126 AHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGV 185
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 186 SREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
E+IVT IAGV LL+S NE LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRGDVK
Sbjct: 246 ESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVK 305
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+ED+ ELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF +KKG H
Sbjct: 306 LLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSH 365
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
VEASP+ DK+VF KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE+CA
Sbjct: 366 VEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCA 425
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+ST RGE+C++G T+FSGYYKR
Sbjct: 426 GTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKR 485
Query: 485 EDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAI 544
EDLTKEV++DGW HTGD+GEWQPDGS+KIIDRKKNIFKLSQGEYVAVEN+ENIY V A+
Sbjct: 486 EDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAV 545
Query: 545 DSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAK 604
DSVWVYGNSFESFL+AI NPN+ LERWAAENGV+GD+ +LC+N KAKEFILGEL ++AK
Sbjct: 546 DSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMAK 605
Query: 605 EKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
EKK+KGFE IKA+HL+PVPFD+ERDLLTPT+KKKRPQLLK+YQ
Sbjct: 606 EKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQ 648
|
|
| TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2624 (928.8 bits), Expect = 6.4e-273, P = 6.4e-273
Identities = 471/646 (72%), Positives = 558/646 (86%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
S +++ EVE AKEA+ G PS+GPVYRS FA++GFP PI G++SCWD+FR AVE+ PNNR
Sbjct: 3 SQKRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNR 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REI +GKAGKYVWKTYKEVYD+VIK+ N++R+CG++E KCGIYG+NC EWII ME
Sbjct: 63 MLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII H+ VSIAFVEEKKIPE+ KT P +T+++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
VKPEQ+EE EK GL ++SWDEFL+LGE KQ++LP+KK +DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT GV L +VN L+ +DVY+SYLPLAH+FDRAIEE I G +IGFWRG
Sbjct: 243 ISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKP+IFCAVPRVLDR+Y+GL QK+S GG KK +F++A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HV ASP DK+VF+KVKQ GG VR+ILSGAAPL H+E+FLRVVAC +VLQGYGLTE
Sbjct: 363 QSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTF + P+E+ M+GTVGPPVPNVD+ LESVPEM YDAL STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALV 541
YKREDLTKEV +DGW HTGD+GEWQP+GS+KIIDRKKNIFKL+QGEYVAVENLEN+Y+ V
Sbjct: 483 YKREDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQV 542
Query: 542 SAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601
I+S+WVYGNSFESFLVAI NP + LERWA ENGVNGDF S+C+N KAK FILGEL +
Sbjct: 543 EVIESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVK 602
Query: 602 VAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
AKE KLKGFE IK VHLEPV FD+ERDLLTPTYKKKRPQLLK+YQ
Sbjct: 603 TAKENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQ 648
|
|
| TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2515 (890.4 bits), Expect = 2.3e-261, P = 2.3e-261
Identities = 452/648 (69%), Positives = 558/648 (86%)
Query: 1 MSNMKYVVEVEKAKEA-SGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPN 59
M+ +Y+VEVEK K+ GG PS+GPVYRS++AKDGFP P + S WD+FR++VE++PN
Sbjct: 1 MATGRYIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPN 60
Query: 60 NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
N MLG+REIVDGKAGKYVW+TYKEV+++VIK+ N+IRT GV + KCGIYG N PEWII
Sbjct: 61 NPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIIS 120
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179
MEACNA GL+CVPLYDTLGAGA+EFIICH+ VS+AF EE KI E+LKT PK+T++LK IV
Sbjct: 121 MEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIV 180
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
SF +V QR E E++ L +YSWD+FL+LGE K ++LP K+++D+CTIMYTSGTTGDPKG
Sbjct: 181 SFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKG 240
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299
V+++NE+I+ + GVK LL++++E+LTS+DVY+SYLPLAHIFDR IEE+ I A+IGFW
Sbjct: 241 VLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFW 300
Query: 300 RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359
RGDVK+L+EDI LKPT+FCAVPRVL+RIY+GL QK+S GG +KK LFN A+ YK N++
Sbjct: 301 RGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNME 360
Query: 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
KG H +ASPIADKIVF KVK+ GG VRLILSGAAPL H+E+FLRVVACAHVLQGYGL
Sbjct: 361 KGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGL 420
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
TE+C GTFVS+PNE+SM+GTVGPPVPNVD+ LESVPEM YDAL+S PRGE+C++G T+FS
Sbjct: 421 TESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFS 480
Query: 480 GYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYA 539
GYYKREDLT+EV +DGW HTGD+GEWQPDG++KIIDRKKNIFKLSQGEYVAVENLENIY+
Sbjct: 481 GYYKREDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYS 540
Query: 540 LVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEL 599
V+AI+S+WVYGNS+ES+LVA+V P+K +E WA E+ V+GDF+S+C N K KEF+LGE
Sbjct: 541 HVAAIESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEF 600
Query: 600 SRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
+RVAK+KKLKGFE IK VHL+ VPFD+ERDL+TP+YK KRPQLLK+YQ
Sbjct: 601 NRVAKDKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQ 648
|
|
| TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1910 (677.4 bits), Expect = 2.9e-197, P = 2.9e-197
Identities = 352/653 (53%), Positives = 481/653 (73%)
Query: 7 VVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIP-GMESCWDVFRMAVERNPNNRMLGQ 65
V+ VE+ + A+ PS GPVYR +AKDG +P ++S W F AV++ PN +MLGQ
Sbjct: 8 VLLVEEGRPATAEHPSAGPVYRCKYAKDGL-LDLPTDIDSPWQFFSEAVKKYPNEQMLGQ 66
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R D K G Y W TYKE +D I++ +AIR+ GV+ CGIYG NCPEWII MEAC +
Sbjct: 67 RVTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMS 126
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
G+ VPLYD+LG AVEFII H+ VS+ FV+EK + +L + +LKTIVSF +V
Sbjct: 127 QGITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVS 186
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
Q+EE + ++++SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++N
Sbjct: 187 STQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNA 246
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
I + + +LE + + DV+ SYLPLAH +D+ +E F+S G+++G+WRGD++
Sbjct: 247 AISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRY 306
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
L++D+ LKPT+FC VPRV D++Y+G+ QKIS+ GL++K LF+ AY+YK N++KG
Sbjct: 307 LMDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQE 366
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
EASP D+++FDK+K++ GGR ++LSGAAPL HVE FLR++ +++ QGYGLTE+C G
Sbjct: 367 EASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGG 426
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-TPRGEVCVKGSTVFSGYYKR 484
+F +L SM+GTVG P+P V+ L SVPEM YDA S+ PRGE+C++G+++FSGY+KR
Sbjct: 427 SFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKR 486
Query: 485 EDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAI 544
+DLT +V++DGWFHTGDIGEWQ DGS+KIIDRKKNIFKLSQGEYVAVENLEN Y+ I
Sbjct: 487 QDLTDQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLI 546
Query: 545 DSVWVYGNSFESFLVAIVNPNKDALERWAAENGVN-GDFKSLCENPKAKEFILGELSRVA 603
+WVYGNSFESFLV +V P++ A+E WA N + DF+SLC+N KA+++ L EL+ A
Sbjct: 547 AQIWVYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTA 606
Query: 604 KEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSE 656
K+ +LKGFE +KA+HLEP PFDIERDL+TPT+K KRPQLL+HY+ ++SE
Sbjct: 607 KQYQLKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659
|
|
| TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
Identities = 324/647 (50%), Positives = 447/647 (69%)
Query: 4 MK-YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPG-MESCWDVFRMAVERNPNNR 61
MK + +VE+ + G+PS+GPVYR+L ++ GFP PI + + WD+F +VE+ P+N
Sbjct: 1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFP-PIDSEITTAWDIFSKSVEKFPDNN 59
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG R IVD K G Y+WKTYKEVY+ V+++ +A+R G E + GIYGVNCP+WII ME
Sbjct: 60 MLGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAME 119
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
AC A L CVPLYDTLG+GAV++I+ H+ + FV++ KI +L+ K + LK IVSF
Sbjct: 120 ACAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSF 179
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
+ V E + + G+ YSW +FL +G K D K +ICTIMYTSGT+GDPKGV+
Sbjct: 180 TNVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVV 239
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
++++ + TF+ G+ ++ +K+T +DVY+S+LPLAHI DR EE F GA++G++ G
Sbjct: 240 LTHQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHG 299
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
++ +L +DI ELKPT VPRV +RI+ G+ + + ++ +FN Y +K L +G
Sbjct: 300 NLNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRG 359
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
+ H +ASP+AD I F K++ GGR+RL++SG APL+P +E FLRV C V+QGYGLTE
Sbjct: 360 YSHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTE 419
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
T GT + P+EM M+GTVG P ++ LE V EM YD L P GE+C++G +FSGY
Sbjct: 420 TLGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGY 479
Query: 482 YKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALV 541
YK +LT+EVM DGWFHTGDIGE P+G LKIIDRKKN+ KLSQGEYVA+E+LENI+
Sbjct: 480 YKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQN 539
Query: 542 SAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601
S + +WVYG+SF+S LVA+V PN + + RWA + G F+ LC P+ KE I+ EL
Sbjct: 540 SVVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKS 599
Query: 602 VAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648
A++ KL+ FE+IKAV +E PFD+ERDL+T T K +R LLK+YQV
Sbjct: 600 TAEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQV 646
|
|
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 262/627 (41%), Positives = 368/627 (58%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AV + + LG R VDG G Y W TY E + + + G+
Sbjct: 81 PDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGI 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
GIY +N PEW+I AC++ VPLYDTLG AV+FI+ H+ V F +
Sbjct: 141 PMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAET 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE-NKQFDLPVK 219
+ +L + ++ +V + G+ V S+ L G N Q P
Sbjct: 201 LNSLLSCLSEMPS-VRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFP-P 258
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K +D+ TI YTSGTTG PKGV++++ N++ +AG S + K S DVY+SYLPLAH
Sbjct: 259 KPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISYLPLAH 313
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
I++RA + + + G A+GF++GD LL+D+ L+PT+F +VPR+ +RIY+G+ + +
Sbjct: 314 IYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTS 373
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
G LK+ LFN AY+ K L G ASPI D++VF+K+K GGRVR + SGA+PL+P
Sbjct: 374 GGLKERLFNAAYNAKKQALLNGKS---ASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSP 430
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
V FL+V V +GYG+TET + ++ G VG P P +V L VPEM Y
Sbjct: 431 EVMEFLKVCFGGRVTEGYGMTETSC-VISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRK 517
+ PRGE+CV+G +F+GYYK E TKEV+ DGW HTGDIG W P G LKIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549
Query: 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENG 577
KNIFKL+QGEY+A E +EN+YA + ++YG+SF S LVA+V+ + D L+ WAA G
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEG 609
Query: 578 VNG-DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYK 636
+ G D + LC NP+ K +L ++ V +E +L+GFEF KAV L PF +E LLTPT+K
Sbjct: 610 IKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFK 669
Query: 637 KKRPQLLKHYQVTFLLVFSEYSLDETS 663
KRPQ +++ ++ E + S
Sbjct: 670 IKRPQAKEYFAEAITNMYKELGASDPS 696
|
|
| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 252/620 (40%), Positives = 366/620 (59%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AVE N+ LG R DG G+Y W TY E + + + GV
Sbjct: 81 PEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGV 140
Query: 101 EERGKC-GIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159
+ G C G+Y +N PEW++ AC A VPLYDTLG AV+F++ H+ + F +
Sbjct: 141 NQ-GDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQ 199
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
+ +L +F ++ IV G+ + S+ + L G +
Sbjct: 200 TL-NILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPP 258
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K DI TI YTSGTTG PKGV++++ N++ +AG SV + DVY+SYLPLAH
Sbjct: 259 KPEDIATICYTSGTTGTPKGVVLTHGNLIANVAG-----SSVEAEFFPSDVYISYLPLAH 313
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
I++RA + + + G A+GF++GDV L++D L+PTIFC+VPR+ +RIY G+ + S
Sbjct: 314 IYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSS 373
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
G++KK LF IAY+ K + G S DK+VF+K+K+ GGRVR + SGA+PL+P
Sbjct: 374 GVVKKRLFEIAYNSKKQAIINGRT---PSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSP 430
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
V FLR+ V +GYG+TET ++ + ++ G VG P P +V L VPEM Y
Sbjct: 431 DVMDFLRICFGCSVREGYGMTETSC-VISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNY 489
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRK 517
+ PRGE+CV+G +F GYYK E+ T+E++ DGW HTGDIG W P G LKIIDRK
Sbjct: 490 TSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRK 549
Query: 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENG 577
KNIFKL+QGEY+A E +EN+Y + +++G+SF S LVAIV+ + + ++ WAA G
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEG 609
Query: 578 VNGD-FKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYK 636
+ + LC +P+ ++ +L E+ + +E +L+GFEF KAV L P PF +E LLTPT+K
Sbjct: 610 IKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPTFK 669
Query: 637 KKRPQLLKHYQVTFLLVFSE 656
KRPQ ++ +++E
Sbjct: 670 IKRPQAKAYFAEAISKMYAE 689
|
|
| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
Identities = 252/622 (40%), Positives = 365/622 (58%)
Query: 47 WDVFRMAVERNPNNRMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+DV+R + ++ ++ LG RE++ DGK G Y W +YK+ + +A+ G+ + +
Sbjct: 57 YDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDR 114
Query: 106 CGIYGVNCPEWIIG-MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
GI+ +N PEW++ M A N L V LY TLGA A+E+++ HS +S+ E K + ++
Sbjct: 115 IGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKI 173
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEI-EKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
L + P TT +KTIVS+ + ++ + + +Y +F +LGE V D
Sbjct: 174 L-SMPGTT--IKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPED 230
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283
+CT++YTSG+TG+PKGVM+++ N+V+ +AG V EDV++SYLPLAH F+R
Sbjct: 231 LCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGV----IPEDVHMSYLPLAHSFER 286
Query: 284 AIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343
A+ + G IGF+ G + L DI L+PT C PRV R++ L +++ LK
Sbjct: 287 AVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLK 346
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVET 403
K LFN + K L+ G +PI DK+VF K K GGRV+ ILSG+APL P +
Sbjct: 347 KFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAE 402
Query: 404 FLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALS 463
FLR C V+ GYGL+E G V+ P + + +G VGPP+ ++ L VPEM Y +
Sbjct: 403 FLRACFCCPVVSGYGLSENVGGASVAYPEDNN-VGHVGPPLSACEMKLIDVPEMNYFSTD 461
Query: 464 ST-PRGEVCVKGSTVFSGYYKREDLTKE-VMVDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521
PRGEVC++G VF GY+K + TKE + DGWFHTGDIG W +G+L IIDRKKNIF
Sbjct: 462 KPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRKKNIF 521
Query: 522 KLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGD 581
KLSQGEYVA E LE+++ V+VYG+S SFLV +V P+ + +++ A D
Sbjct: 522 KLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELD 581
Query: 582 FKSLCENPKAKEF---ILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKK 638
+ K+KE IL A E KL GFE +K +++E PF E +LLTP++K K
Sbjct: 582 VSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPK 641
Query: 639 RPQLLKHYQVTFLLVFSEYSLD 660
RPQL + YQ +++EY D
Sbjct: 642 RPQLKERYQTIIDTLYAEYKRD 663
|
|
| UNIPROTKB|Q1LZF6 ACSL5 "Acyl-CoA synthetase long-chain family member 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 244/610 (40%), Positives = 371/610 (60%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE-- 101
++ +++F+ + + N LG R+ Y W +YK+V D + + + G +
Sbjct: 75 KTTYEIFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGYKPS 130
Query: 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE-KK 160
+ GI+ N PEW+I AC + VPLYDTLGA AV +II + +++ + +K
Sbjct: 131 QESFVGIFAQNRPEWVISEFACYTYSMVAVPLYDTLGAEAVIYIINKADIAMVICDTPQK 190
Query: 161 IPEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
++ K T LK ++ + + ++ EK G+ + S + LG+ + F PV
Sbjct: 191 ALVLISNVEKGLTPGLKLVILMDPFEDDLKKRGEKCGVEILSLFDAENLGK-ENFRKPVP 249
Query: 220 KK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLPL 277
D+ I +TSGTTGDPKG M+++ NIV+ +G +KC+ E V E EDV +SYLPL
Sbjct: 250 PAPEDLSIICFTSGTTGDPKGAMLTHANIVSNASGFLKCM-EGVFEP-NPEDVCISYLPL 307
Query: 278 AHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
AH+F+R ++ + S GA +GF++GD++LL +D+ LKPT+F VPR+L+++Y + +
Sbjct: 308 AHMFERIVQVIVFSYGAKVGFFQGDIRLLPDDMRTLKPTLFPTVPRLLNKVYDKVQNEAK 367
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPL 397
+ LKK L N+A + KF +K+G + + DK++F K+++S GG+VRL+++GAAP+
Sbjct: 368 TP--LKKFLLNLAVASKFREVKRGI--IRRDSLWDKLIFGKIQESLGGKVRLLITGAAPI 423
Query: 398 TPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEM 457
+P V TFLR V + YG TE AG V+LP + G VG P+ V LE VP+M
Sbjct: 424 SPPVLTFLRAALGCLVFEAYGQTECTAGCTVTLPGDWKS-GHVGVPMACNHVKLEDVPDM 482
Query: 458 EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDR 516
Y A+++ GE+C++G VF GY K + T+E + DGW HTGDIG W P+G+LK+IDR
Sbjct: 483 NYFAVNN--EGEICIRGHNVFKGYLKEPEKTQETLDKDGWLHTGDIGRWLPNGTLKVIDR 540
Query: 517 KKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAEN 576
KKNIFKL+QGEY+A E +E +Y S + ++V+G S +SFLV +V P+ DAL +AA+
Sbjct: 541 KKNIFKLAQGEYIAPEKIETVYIRSSLVSQIFVHGESLQSFLVGVVVPDPDALPPFAAKI 600
Query: 577 GVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYK 636
GV G + LC+N K+ IL ++ ++ + LK FE +K +HL P PF IE LLTPT K
Sbjct: 601 GVKGSIEELCQNQTIKKAILEDMHKIGIDGGLKSFEQVKCIHLHPEPFSIENGLLTPTLK 660
Query: 637 KKRPQLLKHY 646
KR L KH+
Sbjct: 661 AKRGDLAKHF 670
|
|
| FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 247/608 (40%), Positives = 353/608 (58%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNA-IRTCGVE 101
+ + + FR + N LG RE + Y W Y E L K A + G
Sbjct: 101 VRTLYQTFREGAYASNNGPCLGWRETL---TSPYQWINYDEAL-LRAKNFGAGMLALGAR 156
Query: 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI 161
+ GIY N PEWI+ + C + L VPLYDTLG A FII + + + VE+
Sbjct: 157 PKQLIGIYSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQTDMQVVIVEDDGK 216
Query: 162 PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG-ENKQFDLPVKK 220
ML K LK IV+ ++ E G+ ++S+ + +LG + ++P
Sbjct: 217 AAML--LEKAPRSLKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKLGAKGNHPEVPPTA 274
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+ D+CT+ YTSGTTG+PKGVM+++ N+V + V +L+ + ++ + DV VS+LPLAH+
Sbjct: 275 E-DLCTVCYTSGTTGNPKGVMLTHGNVVAGVCSV--ILQMGDHRIRAGDVMVSFLPLAHM 331
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
F+R E G +GF+ GD+K L D+ LKPT+ AVPR+L+R+Y + IS+ G
Sbjct: 332 FERCCENGMYYVGGCVGFYSGDIKELTNDLKMLKPTVMPAVPRLLNRVYDKIQNDISASG 391
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
L K+ LFN+A K + +G + + DK+VF KV Q+FGG +RL++ G+APL +
Sbjct: 392 L-KRGLFNMAMRAKEKEIARGV--LRRNGCWDKLVFKKVHQAFGGNLRLMVVGSAPLAGN 448
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460
V TF+R VL+GYG TE C G + VGPPV V L VPEMEY
Sbjct: 449 VLTFMRCALGCLVLEGYGQTE-CTGAITLTVQGDHVPNHVGPPVSCNAVKLVDVPEMEYF 507
Query: 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKN 519
A +T GEVCV+GS VF GYYK + T E + +GW HTGD+G W P+G+L+IIDR+K+
Sbjct: 508 ANQNT--GEVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMWLPNGTLRIIDRRKH 565
Query: 520 IFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVN 579
IFKLSQGEY+ E +ENIY L ++ V+VYG S +S ++A+V P+ D L++WA EN V
Sbjct: 566 IFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPDTDVLKQWATENNVR 625
Query: 580 GDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKR 639
G LC N KE I+ ++ K+ LK FE +K ++L P PF ++ LLTPT+K KR
Sbjct: 626 GTLSVLCNNKNVKELIMNDMLNWGKQSGLKSFEQVKDIYLHPDPFSVQNGLLTPTFKAKR 685
Query: 640 PQLLKHYQ 647
PQL +++
Sbjct: 686 PQLKSYFK 693
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9T0A0 | LACS4_ARATH | 6, ., 2, ., 1, ., 3 | 0.7558 | 0.9698 | 0.9654 | yes | no |
| O88813 | ACSL5_RAT | 6, ., 2, ., 1, ., 3 | 0.4026 | 0.8929 | 0.8667 | yes | no |
| Q9JID6 | ACSL1_CAVPO | 6, ., 2, ., 1, ., 3 | 0.3797 | 0.8929 | 0.8481 | yes | no |
| Q55DR6 | FCSA_DICDI | 6, ., 2, ., 1, ., 3 | 0.4035 | 0.9049 | 0.8995 | yes | no |
| Q8JZR0 | ACSL5_MOUSE | 6, ., 2, ., 1, ., 3 | 0.3977 | 0.8929 | 0.8667 | yes | no |
| Q9T009 | LACS5_ARATH | 6, ., 2, ., 1, ., 3 | 0.7291 | 0.9743 | 0.9699 | no | no |
| Q9ULC5 | ACSL5_HUMAN | 6, ., 2, ., 1, ., 3 | 0.4022 | 0.8883 | 0.8623 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 663 | |||
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 0.0 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 0.0 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-152 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-127 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-121 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 2e-99 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 5e-93 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-86 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 5e-73 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-67 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 6e-62 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-57 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-54 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 7e-45 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 7e-42 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-39 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 3e-38 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-37 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-37 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 7e-37 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 9e-37 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-36 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 3e-34 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 6e-33 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-32 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-31 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 5e-31 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-29 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 6e-29 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 9e-29 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-28 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-28 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-28 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 6e-28 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 4e-26 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 9e-25 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 3e-24 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 6e-24 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 3e-23 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-22 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-22 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-22 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-22 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-22 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 6e-22 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-21 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-21 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 8e-21 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 3e-20 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 3e-20 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 6e-20 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 8e-20 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 3e-19 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 8e-19 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 1e-18 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-18 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-18 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 6e-18 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 6e-18 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-17 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 2e-17 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 7e-17 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 7e-17 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 1e-16 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 2e-16 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 3e-16 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 4e-16 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 9e-16 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-15 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-15 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 4e-15 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 5e-15 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-14 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 2e-14 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 4e-14 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 8e-14 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 3e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-13 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-13 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 8e-13 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 8e-13 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 9e-13 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-12 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 2e-12 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-12 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 3e-12 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 5e-12 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-12 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-11 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-11 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 9e-11 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-10 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-10 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-10 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-10 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-10 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 3e-10 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-10 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 6e-10 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 1e-09 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-09 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-09 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 2e-09 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-09 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-09 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-09 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-09 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 5e-09 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 5e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-09 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-08 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-08 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 3e-08 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 5e-08 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 5e-08 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 6e-08 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 8e-08 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-07 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 2e-07 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 2e-07 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 3e-07 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 5e-07 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 6e-07 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 6e-07 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 7e-07 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 1e-06 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-06 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-06 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 4e-06 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 4e-06 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 5e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 6e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 7e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 8e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-05 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 2e-05 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-05 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-05 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 6e-05 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 8e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 8e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 9e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-04 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 1e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-04 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 3e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 7e-04 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 8e-04 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 8e-04 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.001 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 0.001 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 0.001 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 0.001 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.001 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 0.001 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 0.002 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 0.002 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 0.002 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 0.002 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 0.003 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 0.003 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 0.003 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 0.003 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 0.004 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 0.004 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 0.004 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 0.004 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 1122 bits (2904), Expect = 0.0
Identities = 489/646 (75%), Positives = 572/646 (88%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
K++ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN
Sbjct: 3 QQKKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNP 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REIVDGK GKYVW+TY+EVYD+VIK+ N++R+ GV++ KCGIYG N PEWII ME
Sbjct: 63 MLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
V EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT IAGV LL+S N LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRG
Sbjct: 243 ISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HVEASP+ DK+VF+KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE
Sbjct: 363 QSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALV 541
YKREDLTKEV++DGW HTGD+GEWQP+GS+KIIDRKKNIFKLSQGEYVAVEN+ENIY V
Sbjct: 483 YKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEV 542
Query: 542 SAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601
A+DSVWVYGNSFESFLVAI NPN+ LERWAAENGV+GD+ +LC+N KAKEFILGEL +
Sbjct: 543 QAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVK 602
Query: 602 VAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
+AKEKK+KGFE IKA+HL+PVPFD+ERDLLTPT+KKKRPQLLK+YQ
Sbjct: 603 MAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQ 648
|
Length = 666 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 972 bits (2514), Expect = 0.0
Identities = 393/644 (61%), Positives = 501/644 (77%), Gaps = 1/644 (0%)
Query: 4 MKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRML 63
Y V+VE+++ A+GG+PS GPVYRS++AKDG ++S W F AV++ PNN+ML
Sbjct: 3 ETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQML 62
Query: 64 GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123
G+R++ D K G YVW TYKEVYD I++ +AIR+ GV +CGIYG NCPEWII MEAC
Sbjct: 63 GRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
Query: 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183
N+ G+ VPLYDTLGA AVEFII H+ VSIAFV+E KI +L PK + +LKTIVSF
Sbjct: 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGD 182
Query: 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
V EQ+EE E+ G++ +SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++
Sbjct: 183 VSSEQKEEAEELGVSCFSWEEFSLMG-SLDCELPPKQKTDICTIMYTSGTTGEPKGVILT 241
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDV 303
N I+ + LL+ + T ED Y SYLPLAH++D+ IE IS GA+IGFW+GD+
Sbjct: 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDI 301
Query: 304 KLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK 363
+ L+ED+ LKPTIFC VPRV DRIY+G+ QKISSGG+L+K LF+ AY+YK NL+KG K
Sbjct: 302 RYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLK 361
Query: 364 HVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423
EASP D++VFDK+K+ GGRVRL+LSGAAPL HVE FLRV +C+ + QGYGLTE+C
Sbjct: 362 QEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESC 421
Query: 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYK 483
G F S+ N SM+GTVG P+ ++ LESVPEM YDALS PRGE+C++G+T+FSGY+K
Sbjct: 422 GGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHK 481
Query: 484 REDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSA 543
R+DLT+EV++DGWFHTGDIGEWQP+G++KIIDRKKNIFKLSQGEYVAVENLEN Y+
Sbjct: 482 RQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPL 541
Query: 544 IDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVA 603
I S+WVYGNSFESFLVA+V P++ ALE WAA N GDFKSLC+N KA+++IL EL+
Sbjct: 542 IASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTG 601
Query: 604 KEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
K+ +L+GFE +KA+HLEP PFDIERDL+TPT+K KRPQLLK+Y+
Sbjct: 602 KKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYK 645
|
Length = 660 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 825 bits (2132), Expect = 0.0
Identities = 333/646 (51%), Positives = 455/646 (70%), Gaps = 1/646 (0%)
Query: 4 MK-YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRM 62
MK + +VE+ + G+PS+GPVYR+L +K GFP + + WD+F +VE+ P+N+M
Sbjct: 1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60
Query: 63 LGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122
LG R IVDGK G Y+WKTYKEVY+ V+++ +A+R G E + GIYG NCP+WI+ MEA
Sbjct: 61 LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120
Query: 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182
C A L CVPLYDTLG GAV++I+ H+ + FV++KKI E+L+ K+ + LK IVSF+
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180
Query: 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMV 242
V E+ ++ + G+ YSW +FL +G+ + K DICTIMYTSGT+GDPKGV++
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240
Query: 243 SNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGD 302
++E + TF+ GV +E +K+T +DVY+S+LPLAHI DR IEE F GA++G++ GD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300
Query: 303 VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362
+ L +D+ ELKPT+ VPRV +RI+ G+ + + ++ +FN Y YK + +G+
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360
Query: 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422
H +ASP+AD + F KVK GGR+RL++SG APL+ +E FLRV +CA V+QGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420
Query: 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYY 482
T + P+EM M+GTVG P ++ LE VPEM YD L PRGE+CV+G +FSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480
Query: 483 KREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVS 542
K +LT+EVM DGWFHTGDIGE P+G LKIIDRKKN+ KLSQGEYVA+E LEN+Y
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540
Query: 543 AIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRV 602
++ +WVYG+SF+S LVA+V PN++ +WA +NG G F+ LC P+ KE IL EL
Sbjct: 541 IVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKST 600
Query: 603 AKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648
A++ KL+GFE+IK V LE PFD+ERDL+T T KK+R LLK+YQV
Sbjct: 601 AEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV 646
|
Length = 660 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 787 bits (2036), Expect = 0.0
Identities = 289/576 (50%), Positives = 372/576 (64%), Gaps = 46/576 (7%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL 133
G Y W +YKEV + + + + +R G++ K GI+ N PEWII +AC + L VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193
YDTLG A+E+I+ + +SI F + K
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVK--------------------------------- 87
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
VYS++E +LG+ + K D+ TIMYTSGTTG+PKGVM+++ NIV +AG
Sbjct: 88 -----VYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL 313
+ + V E + DVY+SYLPLAHIF+R +E V + G IG++ GD + L DI EL
Sbjct: 143 I---NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
KPT+F VPRVLDRIY G+ K+++ G LK+TLFN AY+YK L++GH ASP+ DK
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH--GYASPLWDK 257
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+VF K+K + GGRVRL+LSG APL+P + FLRV VLQGYGLTETCAG +S P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317
Query: 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492
+ G VGPP+P ++ L VPEM Y A PRGE+C++G VF GYYK + T E
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376
Query: 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGN 552
DGWFHTGDIGEW PDG+LKIIDRKKN+FKLSQGEYVA+E LENIY +D + VYG+
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGD 436
Query: 553 SFESFLVAIVNPNKDALERWAAENGV-NGDFKSLCENPKAKEFILGELSRVAKEKKLKGF 611
S +SFLVAIV P++D LE+WAAENG GDF+ LC N K K+ IL +L+ + KE LKGF
Sbjct: 437 SLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGF 496
Query: 612 EFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
E +KA+HL P PF E LLTPT+K KRPQL K Y+
Sbjct: 497 EIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYK 532
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 598 bits (1544), Expect = 0.0
Identities = 259/629 (41%), Positives = 366/629 (58%), Gaps = 18/629 (2%)
Query: 26 VYRS----LFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTY 81
VYRS L FP P + + D F AVE + + LG R VDG G+Y W TY
Sbjct: 23 VYRSARSPLKLVSRFP-DHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81
Query: 82 KEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGA 141
E + + + G+ + G+Y +N PEW+I AC+A VPLYDTLG A
Sbjct: 82 GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141
Query: 142 VEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201
V+FI+ H+ V+ F + + +L + ++ IV G+ + +
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLL-SCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVT 200
Query: 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261
+ + L G + K D+ TI YTSGTTG PKGV++++ N++ +AG S+
Sbjct: 201 YSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS-----SL 255
Query: 262 NEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAV 321
+ K DV++SYLPLAHI++R + V + G A+GF++GD L++D+ L+PTIFC+V
Sbjct: 256 STKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSV 315
Query: 322 PRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQ 381
PR+ +RIY G+ + G LK+ LFN AY+ K L+ G SP+ D++VF+K+K
Sbjct: 316 PRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKA 372
Query: 382 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441
GGRVR + SGA+PL+P V FLR+ VL+GYG+TET + + ++ G VG
Sbjct: 373 KLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTET-SCVISGMDEGDNLSGHVG 431
Query: 442 PPVPNVDVCLESVPEMEY-DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499
P P +V L VPEM Y PRGE+CV+G +F GYYK E T+EV+ DGW HT
Sbjct: 432 SPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHT 491
Query: 500 GDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLV 559
GDIG W P G LKIIDRKKNIFKL+QGEY+A E +EN+YA + +VYG+S S LV
Sbjct: 492 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLV 551
Query: 560 AIVNPNKDALERWAAENGVN-GDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVH 618
A+V + + L+ WAA G+ D K LC +P+ + +L ++ V +E +L+GFEF KAV
Sbjct: 552 AVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVT 611
Query: 619 LEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
L P PF +E LLTPT+K KRPQ ++
Sbjct: 612 LVPEPFTVENGLLTPTFKVKRPQAKAYFA 640
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 453 bits (1167), Expect = e-152
Identities = 206/639 (32%), Positives = 317/639 (49%), Gaps = 46/639 (7%)
Query: 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWK--------TYKEVYDLVIKVVN 93
E + E + + L +R ++K TY+E+Y+ V + +
Sbjct: 1 LGERISMAWEDVAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALAS 60
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+ + G+ + I+ N PEW I A ALG VP+Y T + +I+ S +
Sbjct: 61 GLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKV 120
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQRE--EIEKYGLAVYSW---DEFLQL 208
FVE +++ +++ E +V + RE E + L V+ FL
Sbjct: 121 IFVENQELLDLVLPVL---EDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID 177
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
+ + K +D+ TI+YTSGTTG PKGVM+++ N++ +AG+ V +
Sbjct: 178 SAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGID----EVLPPIGPG 233
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRI 328
D +S+LPLAHIF+RA E G ++ D + LLED+ E++PT+ VPRV +++
Sbjct: 234 DRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKV 293
Query: 329 YSGLNQKISSGGLLKKTLFNIAYS----YKFHNLKKGHKHVEASPIADKIVFDKVKQSFG 384
Y G+ +K++ +++ LF A L G + +AD++VF K++ + G
Sbjct: 294 YKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGG-GPLSWLLVADRLVFRKIRDALG 352
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
GR+R LSG APL+P + F R + +L+GYGLTET A V+ P+ ++GTVG P+
Sbjct: 353 GRIRYALSGGAPLSPELLHFFRSLGI-PILEGYGLTETSAVVSVNPPDRF-VLGTVGKPL 410
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIG 503
P ++V + GE+ V+G V GYYK + T E DGWF TGD+G
Sbjct: 411 PGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLG 457
Query: 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVN 563
E DG L I RKK + KLS G+ +A E +E+ A I+ + V G + FLVA++
Sbjct: 458 ELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIV 516
Query: 564 PNKDALERWAAENGVN--GDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEP 621
P+ DALE+WA + L +PK + IL +++ K+L GFE IK L P
Sbjct: 517 PDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKG--NKRLFGFEQIKKFVLLP 574
Query: 622 VPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSEYSLD 660
F E LTPT K KR +L Y+ V+S SL
Sbjct: 575 KEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQSLP 613
|
Length = 613 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-127
Identities = 229/667 (34%), Positives = 349/667 (52%), Gaps = 81/667 (12%)
Query: 36 FPAPIPGMESCWD-------VFRMAVERNPNNRMLGQREIV--------DGKA------G 74
FP + E+ W+ +F + ++ + R+LG R+++ DG+ G
Sbjct: 46 FPELV---ETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLG 102
Query: 75 KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY 134
+Y W TY +V++ V + + G + + I+ EW+I ++ C + V +Y
Sbjct: 103 EYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIY 162
Query: 135 DTLGAGAVEFIICHS----GVSIAFVEEKKIPEMLKTFPKTTEHLKTI---VSFSKVKPE 187
+LG A +CHS V+ + K+ LK + L+T+ + +
Sbjct: 163 ASLGEEA----LCHSLNETEVTTVICDSKQ----LKKLIDISSQLETVKRVIYMDDEGVD 214
Query: 188 QREEIEKYG-LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ V S+ E +LG+ D + NDI IMYTSG+TG PKGVM+++ N
Sbjct: 215 SDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN 274
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
IV +AGV +V KL DVY++YLPLAHI + A E V + GAAIG+ G L
Sbjct: 275 IVATVAGVM----TVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTL 328
Query: 307 LE-----------DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355
+ D LKPT+ AVP +LDR+ G+ +K+ + G L K LF+IAY
Sbjct: 329 TDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAY---- 384
Query: 356 HNLKKGHKHVEAS---------PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR 406
K+ +E S + D +VF K++ GGR+R +LSG APL+ + F+
Sbjct: 385 ---KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFIN 441
Query: 407 VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-T 465
+ A + QGYGLTETCAG S ++ S +G VGPP+P V L S E Y
Sbjct: 442 ICLGAPIGQGYGLTETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPM 500
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVM-VDG----WFHTGDIGEWQPDGSLKIIDRKKNI 520
PRGE+ + G +V GY+K ++ T EV VD WF+TGDIG++ PDG L+IIDRKK+I
Sbjct: 501 PRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDI 560
Query: 521 FKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVN- 579
KL GEYV++ +E ++ +D++ V+ + F S+ VA+V P++ ALE+WA + G++
Sbjct: 561 VKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDY 620
Query: 580 GDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKR 639
+F LCE +A + + LS+ AK +L+ FE + L P P+ E L+T K KR
Sbjct: 621 SNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKR 680
Query: 640 PQLLKHY 646
Q+ K +
Sbjct: 681 EQIRKKF 687
|
Length = 696 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 368 bits (946), Expect = e-121
Identities = 176/572 (30%), Positives = 264/572 (46%), Gaps = 119/572 (20%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL 133
G + T+ E+ + V ++ + GV+ + I N PEW+I A A G VP+
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193
Y T + E + I++ S +
Sbjct: 61 YPTS---------------------------------SPEEVAYILNDSGAR-------- 79
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
+ E+K +D+ T++YTSGTTG+PKGVM+++ N +A
Sbjct: 80 ------------VVFVEDK--------PDDLATLIYTSGTTGNPKGVMLTHRN---LLAQ 116
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAIGFWRGDVKLLLEDIGE 312
LLE + L+ D +S+LPLAH+F+ R E + +S+GA + F + LLED+ E
Sbjct: 117 AAALLEVIP--LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNF-AESPETLLEDLRE 173
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
++PT+F AVPRV ++IY+G+ K+++ G LK+ LF A
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWA---------------------- 211
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432
GGR+R +SG APL P V F R + +L+GYGLTET V+ P
Sbjct: 212 ---------LGGGRLRFAVSGGAPLPPEVLEFFRALGI-PILEGYGLTETSGVATVNRP- 260
Query: 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
IGTVG P+P V+V + GE+ V+G V GYYK + T E +
Sbjct: 261 GDIRIGTVGKPLPGVEVRI-------------AEDGEILVRGPNVMKGYYKNPEATAEAL 307
Query: 493 -VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
DGW HTGDIG DG L I DRKK++ + G+ +A + +EN I V G
Sbjct: 308 DEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG 367
Query: 552 NSFESFLVAIVNPNKDALERWAAENGVNG-DFKSLCENPKAKEFILGELSRVAKEKKLKG 610
+ +L A++ + +ALE+WA ++G+ + L E+P+ + I E+ +L
Sbjct: 368 DD-RPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEA--NARLAR 424
Query: 611 FEFIKAVHLEPVPFDIERDLLTPTYKKKRPQL 642
E IK L P F IE LTPT K +R +
Sbjct: 425 VEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = 2e-99
Identities = 172/596 (28%), Positives = 293/596 (49%), Gaps = 58/596 (9%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+++ ++ + G+ + IY EW+ + + + +Y LG
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182
Query: 140 GAVEF---------IICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQRE 190
A+ + I+C+ K +P +L+ TI+ +
Sbjct: 183 DALAYALRETECKAIVCNG---------KNVPNLLRLMKSGGMPNTTIIYLDSLPAS--- 230
Query: 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVK---KKNDICTIMYTSGTTGDPKGVMVSNENI 247
++ G + +W + + G + P+ +D+ IMYTSGTTGDPKGVM ++ ++
Sbjct: 231 -VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSL 289
Query: 248 VTFIAGVKCLLESVNE---KLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
AG+ L + +N+ ++ Y SYLPLAHI + + +F++ GA IGF G +
Sbjct: 290 T---AGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPR 344
Query: 305 LLLE-------DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357
L + D+ E +P VPR+ D I + K+ G LK+ +F+ AY +
Sbjct: 345 TLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRA 404
Query: 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGY 417
LK+G + +P ++ VF + GGRVR +LSG PL+ + F+ VV V+QG+
Sbjct: 405 LKEG----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-GMVIQGW 459
Query: 418 GLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY-DALSSTPRGEVCVKGST 476
GLTET + ++ VG + V++ L E ++ D PRGE+ ++G
Sbjct: 460 GLTETVCCGGIQRTGDLE-PNAVGQLLKGVEMKLLDTEEYKHTDT--PEPRGEILLRGPF 516
Query: 477 VFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLE 535
+F GYYK+E+LT+EV+ DGWFHTGD+G +G+L+II R K + K GEY+A+E LE
Sbjct: 517 LFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALE 576
Query: 536 NIYAL--VSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593
+Y + + V V + S++ A+V ++ +A E+G+ G++ ++ ++P+ ++
Sbjct: 577 ALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQK 636
Query: 594 FILGELSRVAKEKKLKGFEFIKAVHL---EPVPFDIERDLLTPTYKKKRPQLLKHY 646
L A+ K FE ++ V + E P E +LT K KR + + Y
Sbjct: 637 KATESLQETARAAGRKSFEIVRHVRVLSDEWTP---ENGVLTAAMKLKRRVIDERY 689
|
Length = 700 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 5e-93
Identities = 173/580 (29%), Positives = 266/580 (45%), Gaps = 82/580 (14%)
Query: 73 AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVP 132
G++ T+ +V D ++ A+++ G+E + I NC EWII A G VP
Sbjct: 1 GGQWHEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVP 60
Query: 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF-SKVKPEQREE 191
LY TL A + +++ HS FV + + +K E L TI+ F +
Sbjct: 61 LYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMK--AGVPEGLPTIILFPYSTLKDH--- 115
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
Y WD+ L E Q P+ + D+ TI+YTSGTTG PKGVM+S
Sbjct: 116 --------YKWDDLLAATEPLQGR-PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAA 166
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAAIGFWRGDVKLLLEDI 310
G ++ LT D +SYLPLAHI +R +E + +GA + F + D+
Sbjct: 167 QGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVES-LDTFAADL 220
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+PT+F +VPR+ + G+ K+ L L I PI
Sbjct: 221 QRARPTVFFSVPRLWTKFQQGILAKLPPEKLNL--LLKI-------------------PI 259
Query: 371 ADKIVFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429
+V K+ + G + RL SGAAP+ P + + R + + +GYG+TE A + ++
Sbjct: 260 LSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGL-PICEGYGMTENFAYSTLN 318
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
P + IGTVG P+P V++ + + GE+ ++ + SGYYK + T
Sbjct: 319 YPGDRR-IGTVGKPIPGVELKI-------------SEDGEILIRSPGLMSGYYKDPEKTA 364
Query: 490 EVMV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVW 548
E DGW HTGD GE DG LKI R K +FK S+G+YVA +EN+ + ++ V
Sbjct: 365 EAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVC 424
Query: 549 VYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKE--K 606
V G+ VA+V ++ A +P +E + L + +
Sbjct: 425 VVGSGLPQ-PVALVVLSEAA-------------------DPLEREEVEESLQQTLAKVNS 464
Query: 607 KLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646
+L+ E + A+ + + +E LLTPT K KR + KHY
Sbjct: 465 ELESHERLSALVVVKEAWTVENGLLTPTLKIKRNVVEKHY 504
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 277 bits (710), Expect = 1e-86
Identities = 124/485 (25%), Positives = 199/485 (41%), Gaps = 88/485 (18%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+E+ + ++ A+R GV + I N PEW++ + A G VPL +L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ +I+ S + +++ +P++L+ K L I+ + +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEG------------L 108
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
D+ L G + + P +D+ I+YTSGTTG PKGVM+++ N++ AG+
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGF---WRGDVKLLLEDIGELK 314
LT D + LPL ++ E+F + G + + D LL+ I + K
Sbjct: 168 ----GLTPGDRVLLLLPLHFDG--SVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYK 221
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
T+ VP +L + +K Y +L
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEK----------------KYDLSSL---------------- 249
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
RL+LSG PL P + ++ GYG TET +LP +
Sbjct: 250 -------------RLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296
Query: 434 MSM-IGTVGPPVPNVDVC-----LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ G++G P+P V+V E VP E GE+C++G V GY +L
Sbjct: 297 PEVKPGSIGRPLPGVEVKVLDEEGEPVPPGE--------VGELCIRGPGVARGYLNDPEL 348
Query: 488 TKEVMV-DGWF--HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAI 544
T E V DGW TGD+G W DG L+I+ RK + K+ GE + +E + +
Sbjct: 349 TAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGV 407
Query: 545 DSVWV 549
V
Sbjct: 408 AEAAV 412
|
Length = 412 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 5e-73
Identities = 176/606 (29%), Positives = 281/606 (46%), Gaps = 54/606 (8%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG-MEACNALGLHCVP 132
+ TYK+ Y+ + A G+E GI G N PEW I + A A G+ V
Sbjct: 4 DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGI-AVG 62
Query: 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192
+Y T A +++ S +I V+ K + + HLK I+ + RE +
Sbjct: 63 IYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-------REPL 115
Query: 193 EKYGLAVYSWDEFLQLG---ENKQFD--LPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
++ +YSW EF++LG ++Q D + +K N CT++YTSGTTG PKGVM+S++NI
Sbjct: 116 KEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE-EVFISNGAAIGFWRGDV--K 304
T+ A K ++ ++ + ++ VSYLPL+HI + ++ + IS G + F + D
Sbjct: 176 -TWTA--KAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKG 232
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF-HNLKK--G 361
L++ + E++PT F VPRV ++I + + LK+ + + A NLK G
Sbjct: 233 TLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGG 292
Query: 362 HKHVEASP-IADKIVFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
+A K+VF KV+++ G R + +GAAP++ F + +++ YG+
Sbjct: 293 ESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIP-IMELYGM 351
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
+ET VS P + + G +P + + DA GE+C+ G VF
Sbjct: 352 SETSGPHTVSNPQNYR-LLSCGKALPGCETKIH-----NPDADGI---GEICIWGRHVFM 402
Query: 480 GYYKREDLTKE-VMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLEN-I 537
GY E+ T+E + DGW H+GD+G DG L I R K + + GE V +E +
Sbjct: 403 GYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAV 462
Query: 538 YALVSAIDSVWVYGNS--FESFLVAI---VNPNK----DALERWAAENGVNGDFKSLC-- 586
+ I + + G+ F S L+ + V+P D L A E +
Sbjct: 463 KKELPIISNAMLVGDKRKFLSMLLTLKCEVDPETGEPLDNLTEEAIEFCRLLGSHATTVS 522
Query: 587 -----ENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQ 641
++P E I + RV KE + K V L F + L PT K KRP
Sbjct: 523 EILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVIL-EKDFSVPGGELGPTMKLKRPV 581
Query: 642 LLKHYQ 647
+ K Y+
Sbjct: 582 VAKKYK 587
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 1e-67
Identities = 127/548 (23%), Positives = 212/548 (38%), Gaps = 83/548 (15%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
+ + A RNP+ R + TY+E+ ++ A++ GV
Sbjct: 8 TAELTLASLLERAARRNPD------RPALIFLGRGGRL-TYRELDRRANRLAAALQALGV 60
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
+ + I N PE++I A G VPL L + +I+ +G + +
Sbjct: 61 KPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEF 120
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+L+ + + ++ + + + G D
Sbjct: 121 AA-LLEAVAEALPVVLVVL----------LVGDADDRLPITLEALAAEGPGPDADARPVD 169
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ ++YTSGTTG PKGV++++ N++ A + ++ LT +DV +S+LPL HI
Sbjct: 170 PDDLAFLLYTSGTTGLPKGVVLTHRNLL---ANAAGIAAALGGGLTPDDVVLSWLPLFHI 226
Query: 281 FDRAIEEVFIS---NGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334
F + ++ G + D + +L I + K T+ VP L + L+
Sbjct: 227 F--GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL---LDN 281
Query: 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394
+K +RL+LSG
Sbjct: 282 P-----------------------------------------EKDDDDLSSSLRLVLSGG 300
Query: 395 APLTPHV-ETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLE 452
APL P + E F +L+GYGLTET T + ++ G+VG P+P V+V +
Sbjct: 301 APLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIV 360
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSL 511
+ + GE+ V+G V GY+ R + T E DGW TGD+G DG L
Sbjct: 361 DP---DGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYL 417
Query: 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNPNKDA 568
I+ R K++ GE + E +E + A A+ V G E + +VA+V
Sbjct: 418 YIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGG 476
Query: 569 LERWAAEN 576
AE
Sbjct: 477 DAELTAEE 484
|
Length = 534 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 6e-62
Identities = 144/475 (30%), Positives = 244/475 (51%), Gaps = 31/475 (6%)
Query: 189 REEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV 248
+E+ +K G+++ +D+ + + + + + + I +I+YTSGT+G PKGVM+SN+N+
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330
Query: 249 -TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLL 307
T + K S+ +K + ++SYLP++HI++R I + G I W D+
Sbjct: 331 NTVVPLCKH---SIFKKY-NPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFS 386
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
+DI K I VP+V +RIY+ + +I++ LK+ L K +L+K + +
Sbjct: 387 KDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVK-----KILSLRKSNNNGGF 441
Query: 368 SPIADKI--VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
S + I + K+K + +IL+G L+P + L V+ + QGYGLTET
Sbjct: 442 SKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGP 501
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME-YDALSSTPRGEVCVKGSTVFSGYYKR 484
FV ++ + GP PN V E Y A + P+GE+ +K ++FSGY+
Sbjct: 502 IFVQHADDNNTESIGGPISPNT---KYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLE 558
Query: 485 EDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSA 543
++ TK DG+F TGDI + +GSL +DR K + KLSQGEY+ + L N+Y+ +S
Sbjct: 559 KEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISF 618
Query: 544 IDSVWVYGNSFESFLVAIVNPNKDALERWAAEN------GVNGD--FKSLC-ENPKAKEF 594
I+ VYG+ +AI++ +K L + ++ G+N + L E +
Sbjct: 619 INFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIY 678
Query: 595 I---LGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646
+ G++ V K+ L + I ++L +D + LTPT+K KR + K Y
Sbjct: 679 VDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTN-NYLTPTFKVKRFYVFKDY 732
|
Length = 746 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 1e-57
Identities = 142/593 (23%), Positives = 236/593 (39%), Gaps = 125/593 (21%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
+ R ++P+ +E V + TY E+ + V ++ NA+R GV++ +
Sbjct: 10 RILRHGARKHPD------KEAVYFDGRRT---TYAELDERVNRLANALRALGVKKGDRVA 60
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
++ N E++ A +G P+ L + +I+ + + V+ + +P +
Sbjct: 61 VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAI 120
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
P+ ++T++ + V ++E L + FD P +ND +
Sbjct: 121 LPQLP-TVRTVIV---EGDGPAAPLAPE---VGEYEELLA-AASDTFDFPDIDENDAAAM 172
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
+YTSGTTG PKGV++S+ N+ V L KL+ +DVY+ +P+ H+ +
Sbjct: 173 LYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVHAWGLPY 227
Query: 288 VFISNGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
+ + GA R D + LL+ I + T F AVP + LLK
Sbjct: 228 LALMAGAKQVIPR--RFDPENLLDLIETERVTFFFAVPTIW-------------QMLLKA 272
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VET 403
AY F +L RL++ G A L P +
Sbjct: 273 ---PRAYFVDFSSL-----------------------------RLVIYGGAALPPALLRE 300
Query: 404 FLRVVACAHVLQGYGLTETC-AGTF----VSLPNEMSMIGTVGPPVPNVDVCL-----ES 453
F ++QGYG+TET + LP + + + G P+P V+ + +
Sbjct: 301 FKEKFGID-LVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDE 359
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKI 513
+P + GE+ V+G + GY+ R + T E + GW HTGD+G DG L I
Sbjct: 360 LPPDGGEV------GEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYI 413
Query: 514 IDRKKNIFKLSQGEYV-AVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERW 572
DR K++ S GE + E LE+ A+ V V G D E+W
Sbjct: 414 TDRIKDVII-SGGENIYPRE-LEDALYGHPAVAEVAVIG-------------VPD--EKW 456
Query: 573 --------AAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAV 617
+ G D K L + F+ G R+AK K K F+ +
Sbjct: 457 GERPVAVVVLKPGATLDAKEL------RAFLRG---RLAKFKLPKRIAFVDEL 500
|
Length = 521 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 191 bits (489), Expect = 4e-54
Identities = 114/481 (23%), Positives = 180/481 (37%), Gaps = 117/481 (24%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D+ A R P+ R + K TY E+ +L + ++ GV++ +
Sbjct: 3 DLLERAARRFPD------RPALTFFGRKL---TYAELDELSDRFAAYLQQLGVKKGDRVA 53
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
+ NCP++ I G VP+ +E + SG + V
Sbjct: 54 LMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV----------- 102
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
S+++ L G +D+ +
Sbjct: 103 -------------------------------AISFEDALASGAPLPL-PVELSPDDLAVL 130
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIE 286
YT GTTG PKG M+++ N+V A V+ + V + ED +++ LPL HIF
Sbjct: 131 QYTGGTTGVPKGAMLTHRNLV---ANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNM 187
Query: 287 EVFISNGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345
+ + GA +L++I + TIF VP +Y+ L
Sbjct: 188 LLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPT----LYNALLN----------- 232
Query: 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETF 404
+K ++ +RL +SG APL V E F
Sbjct: 233 ----HPEFKKYDFS--------------------------SLRLCISGGAPLPVEVAERF 262
Query: 405 LRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEY 459
+++GYGLTET T V+ + G++G P+P +V + +P E
Sbjct: 263 EEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGE- 320
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKN 519
GE+ V+G V GY+ R + T EV+ DGW TGDIG DG I+DRKK+
Sbjct: 321 -------VGELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKD 373
Query: 520 I 520
+
Sbjct: 374 M 374
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 7e-45
Identities = 109/456 (23%), Positives = 176/456 (38%), Gaps = 83/456 (18%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH-----CVPLY 134
TY E+ V + A+ G+ + + I+ N P W+I ALG VPL
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIA-----ALGALKAGAVVVPLN 86
Query: 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194
A +I+ FV + + L+ +V + + E K
Sbjct: 87 TRYTADEAAYILARGDAKALFVLGLFLGV-DYSATTRLPALEHVVICETEEDDPHTEKMK 145
Query: 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254
++ +FL G+ + V +D+ I++TSGTTG PKG M+++ +++ A
Sbjct: 146 ------TFTDFLAAGDPAERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLSNAADW 198
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAI----GFWRGDVKLLLED 309
L LT D Y++ P H+F +A + GA I F D +
Sbjct: 199 AEYL-----GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVF---DPDEVFRL 250
Query: 310 IGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASP 369
I + T+ P T++N + +S
Sbjct: 251 IETERITVLPGPP----------------------TMYNSLLQHP-----DRSAEDLSS- 282
Query: 370 IADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VETFLRVVACAHVLQGYGLTETC-AGTF 427
+RL ++GAA + +E F + VL GYGL+E TF
Sbjct: 283 -----------------LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTF 325
Query: 428 VSLPNEMSMI-GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486
L ++ + GT+G + V+ + + E GE+ V+G V GYY +
Sbjct: 326 NRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV---GELLVRGPNVMKGYYDDPE 382
Query: 487 LTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521
T + DGW HTGD+G +G L I+DRKK++F
Sbjct: 383 ATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 7e-42
Identities = 96/334 (28%), Positives = 142/334 (42%), Gaps = 60/334 (17%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGV++S+ N +A + L +++ LT DV +S LPL H+
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRN---LLANAQALAQAIG--LTEGDVLLSVLPLFHVVG 55
Query: 283 R--AIEEVFISNGAAIGFWRGDV-KLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
+ ++ G + + LE I + + T+ VP + D +
Sbjct: 56 GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------- 104
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
K E +RL++SG PL+P
Sbjct: 105 ----------------------AKAAEDRGYDLS------------SLRLLISGGEPLSP 130
Query: 400 HV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
+ E F +L+GYGLTET T + +E+ GTVG PVP V+V + V E E
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDE-E 186
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKR-EDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRK 517
L GE+ V+G V GY+ + T DGW+ TGD+G +G L I R
Sbjct: 187 GKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246
Query: 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
K++ K GE V +E++ A+ V G
Sbjct: 247 KDLIK-VGGENVYPAEVESVLLQHPAVAEAAVVG 279
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 8e-39
Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 80/357 (22%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
TI++TSG+TG PK V+ + N + G L LT +D ++ LPL H+
Sbjct: 78 RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLLSLPLFHVSG 132
Query: 283 RAIEEVFIS--NGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
AI V S G A+ + D + + E + T VP L R+ L + S
Sbjct: 133 LAI--VMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGARWLS- 189
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
+R +L G AP+ P
Sbjct: 190 ----------------------------------------------SLRAVLLGGAPIPP 203
Query: 400 HVETFLRVVACAH--VLQGYGLTETCAGTFVSLPNEMSM--IGTVGPPVPNVDVCLESVP 455
+ L + YG+TET + +L + + +G+VG P+P ++ + +
Sbjct: 204 ---SLLEQARQRGIPLYPTYGMTETAS-QVATLKPDDFLAKLGSVGKPLPGRELRIVNPQ 259
Query: 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515
+ GE+ V+G ++F GY + LT + DGWFHTGD+G +G L ++
Sbjct: 260 D-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYLDAEGYLYVLG 308
Query: 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNPNKDAL 569
R+ ++ +S GE + E +E + A++ V G + + VA V PN D +
Sbjct: 309 RRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPV 364
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 3e-38
Identities = 122/507 (24%), Positives = 204/507 (40%), Gaps = 105/507 (20%)
Query: 61 RMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
R G REIV G TY + Y V ++ NA+ + GV+ + N +
Sbjct: 7 RYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLEL 66
Query: 120 MEACNALG--LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKT 177
A +G LH + L + +II H+ + FV++ +P +L+ +K
Sbjct: 67 YFAVPGMGAVLHTLNP--RLSPEQIAYIINHAEDKVIFVDDDFLP-LLEAIAPRLPTVKA 123
Query: 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237
+V + + VY+++E L+ E+ +++ P +N + YTSGTTG+P
Sbjct: 124 VVVYDDADMPETS-----LPNVYAYEELLE-EESPEYEWPELDENTAAGLCYTSGTTGNP 177
Query: 238 KGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAA 295
KGV+ S+ ++V T + L +S+ L+ D + +P+ H+ N
Sbjct: 178 KGVVYSHRSLVLHTLAS---ALPDSLG--LSESDTVLPVVPMFHV-----------NAWG 221
Query: 296 IGF---WRG----------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
+ + G D LL+ I E K T+ VP + GLL
Sbjct: 222 LPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIW-------------LGLL 268
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
L+ K R+++ G+A +E
Sbjct: 269 N-------------YLEANGKD------------------LSSLRRVVVGGSALPRSLIE 297
Query: 403 TFLRVVACAHVLQGYGLTETC-AGTFVSLPNEMSMIG---------TVGPPVPNVDVCL- 451
V+ +G+TET GT L + + G PVP V++ +
Sbjct: 298 KLEE--RGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIV 355
Query: 452 -ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGS 510
+ E+ +D + GE+ V+G V YYK + T+E+ DGWF TGD+ DG
Sbjct: 356 DDEGNELPWDGKTV---GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGY 412
Query: 511 LKIIDRKKNIFKLSQGEYVAVENLENI 537
++I DR K++ K S GE+++ LEN
Sbjct: 413 IQITDRAKDVIK-SGGEWISSVELENA 438
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-37
Identities = 86/332 (25%), Positives = 125/332 (37%), Gaps = 84/332 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I YTSGTTG PKG M+++ N++ + + LT D + +PL H+F
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLN---NGYSIARRL--GLTEGDRTLVPVPLFHVF- 56
Query: 283 RAIEEVF---ISNGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
+ ++ GA + + D L I + T VP +
Sbjct: 57 -GLVLGVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIA--------- 104
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
LL+ F+ + +L+ G I GA
Sbjct: 105 ----LLEHPDFD---KFDLSSLRTG----------------------------ISGGAPV 129
Query: 397 LTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCL--- 451
V A + GYG+TET + ++ GTVG P+P V+V +
Sbjct: 130 PPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVDP 189
Query: 452 --ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV-MVDGWFHTGDIGEWQPD 508
VP E GE+CV+G +V GYY + T E DGW HTGD+G D
Sbjct: 190 DGGEVPPGE--------VGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241
Query: 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540
G L+I+ R K++ G ENIY
Sbjct: 242 GYLRIVGRIKDMII-RGG--------ENIYPA 264
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-37
Identities = 120/493 (24%), Positives = 192/493 (38%), Gaps = 116/493 (23%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+E YD ++ +A+ G+ + + N P + G VPL L A
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90
Query: 140 GAVEFIICHSGVSIAFVEEKKIP--EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197
+ FI+ HS + FV+++ + E T E + T + E EE +
Sbjct: 91 DDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGD---- 146
Query: 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257
+++ L G+ +P + D ++ YTSGTTG+PKGV+ ++ A + L
Sbjct: 147 ----YEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRG-----AYLNAL 197
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-------AAIG----FWRG-DVKL 305
+ + VY+ LP+ H NG A+G R D
Sbjct: 198 GNVIEWGMPDRPVYLWTLPMFH-----------CNGWCFPWAITAVGGTHVCLRKVDAPA 246
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
+ + I + K T C P VL+ L N
Sbjct: 247 IYDLIEKHKVTHLCGAPTVLN------------------MLANAP--------------- 273
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTET-- 422
+ K VR++ +GA P P V ++ V YGLTET
Sbjct: 274 -----------EADKLPLPRPVRVMTAGAPP-PPAV--IKKMEELGFEVTHVYGLTETYG 319
Query: 423 ----CA--GTFVSLPNE----MSM---IGTVGPPVPNVDVCLESVPEMEYDALSSTPR-- 467
C + +LP E + + VG + VDV ++ + + PR
Sbjct: 320 PITVCEWKPEWDALPAEERARLKARQGVRYVG--LEEVDV-------VDPETMKDVPRDG 370
Query: 468 ---GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524
GE+ ++G+TV GYYK + T+E GWFH+GD+ PDG ++I DR K+I +S
Sbjct: 371 KTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDII-IS 429
Query: 525 QGEYVAVENLENI 537
GE ++ +E +
Sbjct: 430 GGENISSIEVEGV 442
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 7e-37
Identities = 96/318 (30%), Positives = 136/318 (42%), Gaps = 69/318 (21%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276
V K++D+ + Y+SGTTG KGVM+++ N IA V L+ EDV + LP
Sbjct: 153 VVIKQDDVAALPYSSGTTGRSKGVMLTHRN---LIANVAQLVAGEGPNFDREDVTLCVLP 209
Query: 277 LAHIFD-----RAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDR 327
+ HI+ A+ + GA + F D++ L I + K T VP ++
Sbjct: 210 MFHIYGLTVILLAL----LRLGATVVVMPRF---DLEKFLAAIEKYKVTHLPVVPPIV-- 260
Query: 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRV 387
L+K PI DK +KQ
Sbjct: 261 -----------LALVKH------------------------PIVDKYDLSSLKQ------ 279
Query: 388 RLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVP 445
I SGAAPL + E F + QGYG+TE+ T + E G+VG VP
Sbjct: 280 --IGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVP 337
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGE 504
NV+ + PE ++L GE+ V+G V GY + T E + DGW HTGD+G
Sbjct: 338 NVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGY 395
Query: 505 WQPDGSLKIIDRKKNIFK 522
+ DG L I+DR K + K
Sbjct: 396 FDEDGYLFIVDRLKELIK 413
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 9e-37
Identities = 97/328 (29%), Positives = 141/328 (42%), Gaps = 84/328 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGVM+++ N++ V L L+ DVY+ PL H
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLA--NAVNALAG---VDLSPGDVYLLAAPLYH--- 53
Query: 283 RAIEEVFISNGAAIG-----FWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
A +F+ A G + D + +L+ I + T VP + R
Sbjct: 54 -AAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQR---------- 102
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPL 397
LL+ + F + S +RLI+ GAAP+
Sbjct: 103 ---LLR--------------------LPD---------FARYDLS---SLRLIIYGAAPM 127
Query: 398 TPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGTVGPPVPNVDVCL---- 451
+ + +QGYG+TET T + P + +G+VG PVP V+V +
Sbjct: 128 PAELKRAMIEWFGPV-FVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDED 186
Query: 452 -ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGS 510
+P E GE+ V+G V +GY+ R + T E + DGW HTGD+G DG
Sbjct: 187 GRELPPGE--------VGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGY 238
Query: 511 LKIIDRKKNIFKLSQGEYVAVENLENIY 538
L I+DRKK++ +S G ENIY
Sbjct: 239 LYIVDRKKDMI-ISGG--------ENIY 257
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-36
Identities = 109/508 (21%), Positives = 185/508 (36%), Gaps = 114/508 (22%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
T++++ + A++ G+ + + G N E ++ + AC LG L L
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ V ++L T E S +++ R E
Sbjct: 61 NERTNQLEDLDV-----------QLLLTDSLLEEKDFQADSLDRIEAAGRYETSL----- 104
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+ F++ + I T+M+TSGTTG PK V + N G K L
Sbjct: 105 -----------SASFNM-----DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFC 319
T +D ++ LPL HI +I ++ GA + +LL E I + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLL-EMIANERVTHIS 202
Query: 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV 379
VP L+R LL + HN
Sbjct: 203 LVPTQLNR-------------LLDEGG---------HNE--------------------- 219
Query: 380 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHV--LQGYGLTETCAGTFVSLPNEMSM- 436
+R IL G + + + + YG+TETC+ + EM
Sbjct: 220 ------NLRKILLGGSAIP---APLIEEAQQYGLPIYLSYGMTETCS-QVTTATPEMLHA 269
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGW 496
VG P+ ++ ++ V E GE+ VKG+ + GY + +LT GW
Sbjct: 270 RPDVGRPLAGREIKIK-VDNKE-------GHGEIMVKGANLMKGYLYQGELTPAFEQQGW 321
Query: 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY---------ALVSAIDSV 547
F+TGDIGE +G L ++ R+ ++ +S GE + E +E + +V D+
Sbjct: 322 FNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAE 380
Query: 548 WVYGNSFESFLVAIVNPNKDALERWAAE 575
W G +++V+ + ++ L + E
Sbjct: 381 W--GQVPVAYIVSESDISQAKLIAYLTE 406
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-34
Identities = 128/530 (24%), Positives = 204/530 (38%), Gaps = 123/530 (23%)
Query: 34 DGFPAPI-PGMESCWDVFRMAVERNPNNRML---GQREIVDGKAGKYVWKTYKEVYDLVI 89
P + G + D++ AV R + L G TY E+ V
Sbjct: 21 PWTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATT------------TYAELGKQVR 68
Query: 90 KVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV---PLYDTLGAGAVEFII 146
+ +R GV + I NCP+ I+ A LG V PLY A +E
Sbjct: 69 RAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT---AHELEHPF 125
Query: 147 CHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS--FSKVKP---------------EQR 189
G +A V +K P ++ +TT L+TIVS P + R
Sbjct: 126 EDHGARVAIVWDKVAP-TVERLRRTTP-LETIVSVNMIAAMPLLQRLALRLPIPALRKAR 183
Query: 190 EEIEKYGLAVYSWDEFLQ---LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ W+ + G+ P +D+ I+YTSGTTG PKG +++ N
Sbjct: 184 AALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRN 243
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIG-----FWRG 301
+ A K + + + E V + LP+ H + + +IG
Sbjct: 244 LFANAAQGKAWVPGLGDG--PERVLAA-LPMFHAYGLTLCLTL---AVSIGGELVLLPAP 297
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
D+ L+L+ + + PT VP + ++I
Sbjct: 298 DIDLILDAMKKHPPTWLPGVPPLYEKI--------------------------------- 324
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VETFLRVVACAHVLQGYGLT 420
EA+ + V+ +F SGA L VE + ++ +++GYGLT
Sbjct: 325 ---AEAAE-ERGVDLSGVRNAF--------SGAMALPVSTVELWEKLTG-GLLVEGYGLT 371
Query: 421 ETCAGTFVSLPNEMS---MIGTVGPPVPNVDVCL-------ESVPEMEYDALSSTPRGEV 470
ET + + N MS G VG P P+ +V + E++P+ E GE+
Sbjct: 372 ETSP---IIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE--------EGEL 420
Query: 471 CVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNI 520
V+G VF GY+ R + T + +DGWF TGD+ + DG ++I+DR K +
Sbjct: 421 LVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKEL 470
|
Length = 573 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 6e-33
Identities = 108/385 (28%), Positives = 157/385 (40%), Gaps = 100/385 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGV++++ N+ A + L+E+ + T+ DV + LPL H+
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNL---AANARALVEAW--RWTASDVLLHALPLHHVHG 143
Query: 283 RAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
+ N W G D + + T+F VP IY+ L
Sbjct: 144 -------LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPT----IYTRL- 191
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
L+ A+ A + RL +SG
Sbjct: 192 ------------------------LEHYEFDDAAAAAARNL-------------RLFVSG 214
Query: 394 AAPLTPHV-ETFLRVVACAH-VLQGYGLTETCAGTFVSLP-NEMSMIGTVGPPVPNVDVC 450
+A L V E + H +L+ YG+TET G +S P + GTVG P+P V+V
Sbjct: 215 SAALPVPVLERWEERTG--HTLLERYGMTET--GMALSNPLDGERRPGTVGLPLPGVEVR 270
Query: 451 LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDG 509
+ V E + L++ GE+ V+G VFS Y+ + + T E DGWF TGD+G DG
Sbjct: 271 I--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDG 328
Query: 510 SLKIIDRKK-NIFKLSQGEYVAVENLENIYAL--VSAIDS------VWVYGNSFESF--- 557
+I+ RK +I K G Y + AL A+ V V G +
Sbjct: 329 YYRILGRKSDDIIK--SGGY-------KVSALEIEEALLEHPGVAEVAVIGVPDPDWGEA 379
Query: 558 LVAIVNPNK------DALERWAAEN 576
+VA+V P L WA E
Sbjct: 380 VVAVVVPEAGAALTLAELRAWAREK 404
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-32
Identities = 99/401 (24%), Positives = 160/401 (39%), Gaps = 81/401 (20%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D I++TSGTTG PKGV ++++N++ + + + KLT D ++ +PL HI
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHIH 56
Query: 282 DRAIEEV--FISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
+ + ++ G+ + + +DI + + T + AVP
Sbjct: 57 GLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVP----------------- 99
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
T+ I LK + P R+R I S +APL P
Sbjct: 100 -----TIHQIL-------LKTAKPNPGKPPP---------------RLRFIRSASAPLPP 132
Query: 400 HV----ETFLRVVACAHVLQGYGLTETCAGTFVS-LPNEMSMIGTVGPPVPNVDVCLESV 454
V E V VL+ YG+TE + LP + G+VG P V+V ++
Sbjct: 133 AVLDRLEKRFGV----PVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEV---AI 184
Query: 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKII 514
+ + L GE+ ++G V +GY + +E DGWF TGD+G DG L +
Sbjct: 185 LDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYLFLT 244
Query: 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNPNKD---- 567
R K + GE ++ +E + A+ V+G E + + A V D
Sbjct: 245 GRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVT 303
Query: 568 --ALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEK 606
L +A + FK PK K + L + A K
Sbjct: 304 IEELRDFARKRLA--AFKV----PK-KILFVDALPKGATGK 337
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-31
Identities = 108/483 (22%), Positives = 174/483 (36%), Gaps = 125/483 (25%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV-NCPEWIIGMEACNALGLHCVPLYDTLG 138
TY E+ D ++ A+ GV G + + N E+++ AC +G P+
Sbjct: 3 TYGELDDAADRLAAALAELGVR-PGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ FI+ + + F +P+ + F
Sbjct: 62 ERELGFILRQARARVLF-----VPDEFRGFD----------------------------- 87
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ + +D+ ++YTSGTTG+PKGVM ++ ++ + L
Sbjct: 88 ------YAAMP------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL 129
Query: 259 ESVNEKLTSEDVYVSYLPLAHI--FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
LT +DV + PLAHI F +E + + R D LE I E T
Sbjct: 130 G-----LTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVT 184
Query: 317 IFC-AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
A P + D LL +A+
Sbjct: 185 FTMGATPFLAD--------------LLA--------------------AADAAGPDL--- 207
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH------VLQGYGLTETCAGTFVS 429
+R+ L G AP+ + A V++ YG+TE T +
Sbjct: 208 ---------PSLRVFLCGGAPVPR------ELARRAAEALGAKVVRAYGMTEVPLVTVGT 252
Query: 430 LPNEMSMI-GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ T G PVP V+V + V + + + GE+ V+G +F GY D T
Sbjct: 253 PDDPDDKRAATDGRPVPGVEVRI--VDDDG-NDVPPGEEGELQVRGPQLFLGYLDPPDNT 309
Query: 489 KEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVW 548
+ DGWF TGD+G DG L+I RKK+I + GE ++ +E++ A+ V
Sbjct: 310 EAFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVA 368
Query: 549 VYG 551
V
Sbjct: 369 VVA 371
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 5e-31
Identities = 93/342 (27%), Positives = 138/342 (40%), Gaps = 83/342 (24%)
Query: 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271
+ L K +D I++TSG+ G PKGV++S+ N++ I + +++ L +EDV
Sbjct: 135 LRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-----LNTEDVL 189
Query: 272 VSYLPLAHIFDRAIEEVFISNGAAIGFW----RG----------DVKLLLEDIGELKPTI 317
+ LPL H F G + G D K + E I + K TI
Sbjct: 190 LGALPLFHAF-----------GLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATI 238
Query: 318 FCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377
C P L R Y + H +S
Sbjct: 239 LCGTPTFL-RGY----------------------------ARNAHPEDFSS--------- 260
Query: 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437
+RL+++GA L +L+GYG TE V+ P +
Sbjct: 261 ---------LRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMG-NKP 310
Query: 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--DG 495
GTVG P+P ++V + S E + G + V+G V SGY E+ T EV V DG
Sbjct: 311 GTVGRPLPGIEVRIVSPETHEELPIGEG--GLLLVRGPNVMSGYLNNEEKTSEVEVLGDG 368
Query: 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
W+ TGDIG+ DG L I+ R K K+ GE V++ +E +
Sbjct: 369 WYDTGDIGKIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEEL 409
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-29
Identities = 98/337 (29%), Positives = 158/337 (46%), Gaps = 54/337 (16%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES-VNEK 264
L G + + +D+ + YT GTTG KG M+++ N+V + + L+ S +NE
Sbjct: 191 LAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE- 249
Query: 265 LTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRV 324
++ ++ LPL HI+ F + A+ G+ +L+ + PR
Sbjct: 250 --GCEILIAPLPLYHIY------AFTFHCMAM-MLIGNHNILISN------------PRD 288
Query: 325 LDRIYSGLNQKISSGGLLKKTLFN-IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
L + L + SG + TLF + + F L F +K +
Sbjct: 289 LPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD----------------FSALKLTL 332
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
G + L L+ A E + V CA + +GYG+TET V+ P++ +GT+G P
Sbjct: 333 SGGMALQLATA-------ERWKEVTGCA-ICEGYGMTETSPVVSVN-PSQAIQVGTIGIP 383
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDI 502
VP+ L V + + + L GE+CVKG V GY++R + T E++ DGW TGDI
Sbjct: 384 VPST---LCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDI 440
Query: 503 GEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYA 539
Q DG ++I+DRKK++ +S G V LE++ A
Sbjct: 441 ALIQEDGYMRIVDRKKDMILVS-GFNVYPNELEDVLA 476
|
Length = 562 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 6e-29
Identities = 102/373 (27%), Positives = 166/373 (44%), Gaps = 83/373 (22%)
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGL--AVYSWDEFLQLGENKQFDLPVKKKNDI 224
+ K T+V+F VK +R + KY L A+ S+ L G Q+ P D+
Sbjct: 157 STAK-----GTLVNFV-VKYIKRL-VPKYHLPDAI-SFRSALHKGRRMQYVKPELVPEDL 208
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF--- 281
+ YT GTTG KG M+++ N++ + K + +++ V+ LPL HIF
Sbjct: 209 AFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHP--GKELVVTALPLYHIFALT 266
Query: 282 -------DRAIEEVFISNGAAI-GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
+ + + I+N I GF + ELK F A+ +G+N
Sbjct: 267 VNCLLFIELGGQNLLITNPRDIPGF-----------VKELKKYPFTAI--------TGVN 307
Query: 334 QKISSGGLLKKTLFN-IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
TLFN + + +F L F +K S GG
Sbjct: 308 -----------TLFNALLNNEEFQELD----------------FSSLKLSVGG------- 333
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G A E ++++ ++L+GYGLTE C+ P ++ G++G PVP+ ++
Sbjct: 334 GMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLPVPSTEI-- 389
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSL 511
+ + + + + GE+ VKG V GY++R + T EV+ DGW TGDI +G L
Sbjct: 390 -KLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFL 448
Query: 512 KIIDRKKNIFKLS 524
+I+DRKK++ +S
Sbjct: 449 RIVDRKKDMILVS 461
|
Length = 560 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 9e-29
Identities = 124/466 (26%), Positives = 203/466 (43%), Gaps = 85/466 (18%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG---LHCVPLYD- 135
T+ +D V + N ++ GVE+ + I NCP+ +IG G + PLY
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 136 -----TLGAGAVEFIIC-----------HSGVSIAFVEEKKIPEMLKTFPKTTEH--LKT 177
L + I+C S I V +I + L FPK + ++
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLP-FPKNLLYPFVQK 169
Query: 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237
S VK + E I + W+ ++ N ++P +ND+ + YT GTTG P
Sbjct: 170 KQSNLVVKVSESETI-------HLWNS-VEKEVNTGVEVPCDPENDLALLQYTGGTTGFP 221
Query: 238 KGVMVSNENIVT-FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNG-A 294
KGVM++++N+V+ + GV+ L E+V + LP H++ A+ + I G
Sbjct: 222 KGVMLTHKNLVSNTLMGVQWLYNCKE----GEEVVLGVLPFFHVYGMTAVMNLSIMQGYK 277
Query: 295 AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354
+ + D+K++ E I + K T+F P IY L + LLK+ ++I+
Sbjct: 278 MVLIPKFDMKMVFEAIKKHKVTLFPGAPT----IYIAL----LNSPLLKE--YDIS---- 323
Query: 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414
+R +SG+APL V+ V ++
Sbjct: 324 -------------------------------SIRACISGSAPLPVEVQEKFETVTGGKLV 352
Query: 415 QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474
+GYGLTE+ T + E + G++G P P+ + + S+ E AL GE+ VKG
Sbjct: 353 EGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGE--ALPPGEIGEIVVKG 410
Query: 475 STVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNI 520
+ GY+ + + T V+ DGW HTGD+G DG + DRKK++
Sbjct: 411 PQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDM 456
|
Length = 563 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGT 426
SP+ DK +R+I SGAAPL+ + E + + QGYG+TET T
Sbjct: 254 SPLVDKYDL--------SSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486
++ P + G+VG VPNV+ + V E +L RGE+CVKG + GY +
Sbjct: 306 TLTPPGDEKP-GSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362
Query: 487 LTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAID 545
TKE + DGW HTGDIG + DG+ I+DRKK + K +G V LE + +
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421
Query: 546 SVWVYG 551
V G
Sbjct: 422 DAAVIG 427
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 114/484 (23%), Positives = 182/484 (37%), Gaps = 98/484 (20%)
Query: 80 TYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
TYK++++ V KV + V++ + I N E+I+ + A + VPL L
Sbjct: 29 TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ F + SG ++ FVE KTF ++ + +V I L
Sbjct: 89 ENELIFQLKDSGTTVLFVE--------KTFQNMALSMQKVSYVQRV-------ISITSLK 133
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
++ + K + K ++ I YTSGTTG PKG +++ EN+ F +
Sbjct: 134 --------EIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENM--FWNALNNTF 183
Query: 259 ESVNEKLTSEDVYVSYLPLAHI-----FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL 313
LT D + LPL HI F A +F + G I + + L I +
Sbjct: 184 AI---DLTMHDRSIVLLPLFHIGGIGLF--AFPTLF-AGGVIIVPRKFEPTKALSMIEKH 237
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
K T+ VP + H+ + +
Sbjct: 238 KVTVVMGVPTI-------------------------------------HQALINCSKFET 260
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQG--YGLTETCAGTFVSLP 431
VR +G AP E +R L G +G+TET F+
Sbjct: 261 TNLQS--------VRWFYNGGAPCP---EELMREFIDRGFLFGQGFGMTETSPTVFMLSE 309
Query: 432 NEMS-MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV---CVKGSTVFSGYYKREDL 487
+ +G++G PV D L + + GEV ++G V Y+ R D
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID------ENKNKVEVGEVGELLIRGPNVMKEYWNRPDA 363
Query: 488 TKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSV 547
T+E + DGW TGD+ DG + I+ RKK + +S GE + +E + +S + V
Sbjct: 364 TEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEV 422
Query: 548 WVYG 551
V G
Sbjct: 423 AVVG 426
|
Length = 496 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 96/465 (20%), Positives = 151/465 (32%), Gaps = 101/465 (21%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCG----IYGVNCPEWIIGMEACNALGLHCVPLYD 135
TY ++ V ++ NA++ + G G IY N PE +I + A +G +
Sbjct: 42 TYGDLRREVARLANALK----DLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSP 97
Query: 136 TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195
L A AV I G + T + K I +
Sbjct: 98 GLSAEAVADRIADLGPKVLI-----------ADDGTFRNGKEIALLEDAD-AVLSSVVVV 145
Query: 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA-GV 254
+DE ++ +++F+ +D ++YTSGTTG PKG++ S+ +
Sbjct: 146 PRLGLWYDEAVE-KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTA 204
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFIS---NGAAIGFWRG----DVKLLL 307
K L D + + I+ + S +GA + G + L
Sbjct: 205 KFHG-----DLLPGDRFWNSSDPGWIY--GLWYSVFSPLASGATTVLYDGRPFYSPERLW 257
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
E + + K TIF P L R L K
Sbjct: 258 EALEKYKVTIFGTSPTFLRR--------------LMK----------------------- 280
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGT 426
+ +R++ S PL P E F + +L YG TET G
Sbjct: 281 --------LGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGF 331
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGST--VFS 479
P G+ G P+P V VP GE+ V+ +
Sbjct: 332 IAGRPP--VKNGSSGLPLPGYAVRRVDDEGNPVPPGV---------GELVVRLPWPGMAL 380
Query: 480 GYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524
Y+ + KE W+ TGD E DG + R ++ K+S
Sbjct: 381 TYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVS 425
|
Length = 528 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-28
Identities = 109/366 (29%), Positives = 159/366 (43%), Gaps = 73/366 (19%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+DI + YT GTTG KG M+++ N+V + L + +V ++ LPL HIF
Sbjct: 208 DDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIF 267
Query: 282 D-RAIEEVF---------ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
A VF ISN + G VK ELK T F A ++G
Sbjct: 268 ALTANGLVFMKIGGCNHLISNPRDM---PGFVK-------ELKKTRFTA--------FTG 309
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+N TLFN N +P D+I F +K + GG
Sbjct: 310 VN-----------TLFN-----GLLN----------TPGFDQIDFSSLKMTLGG------ 337
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451
G A E + +V V + YGLTET ++ G++G P+P+ D C+
Sbjct: 338 -GMAVQRSVAERWKQVTGLTLV-EAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACI 395
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGS 510
+ + L+ GE+C+KG V GY+KR + T +VM DGW HTGDI G
Sbjct: 396 K---DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGF 452
Query: 511 LKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG----NSFESFLVAIV--NP 564
+ I+DRKK++ +S G V +E++ A++ + V G S E V IV +P
Sbjct: 453 VYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP 511
Query: 565 NKDALE 570
A +
Sbjct: 512 ALTAED 517
|
Length = 560 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 85/320 (26%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ ++YTSG+TG PKGV+V++ ++V +A + L +D + + L+ F
Sbjct: 120 DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG-----LDPDDRVLQFASLS--F 172
Query: 282 DRAIEEVF--ISNGAA--------IGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
D ++EE+F + GA + L+ E T+ P +L + +
Sbjct: 173 DASVEEIFGALLAGATLVVPPEDEERDDAALLAALIA---EHPVTVLNLTPSLLALLAAA 229
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
L ++S +RL++
Sbjct: 230 LPPALAS------------------------------------------------LRLVI 241
Query: 392 SGAAPLTP-HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT----VGPPVPN 446
G LTP V+ + A ++ YG TET + +L + +G P+ N
Sbjct: 242 LGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLAN 301
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF--------- 497
+ + ++ + GE+ + G V GY R +LT E V F
Sbjct: 302 TRLYVLD-DDLRPVPVGVV--GELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLY 358
Query: 498 HTGDIGEWQPDGSLKIIDRK 517
TGD+ + PDG+L+ + R
Sbjct: 359 RTGDLVRYLPDGNLEFLGRI 378
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-25
Identities = 94/329 (28%), Positives = 144/329 (43%), Gaps = 62/329 (18%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265
L G + F +D+ + YT GTTG KG + + NIV + ++ L+ EK
Sbjct: 188 LAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK 247
Query: 266 TSED--VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLED-------IGELKPT 316
D +V LPL HIF A+ + +G G +L+ + I ELK
Sbjct: 248 PRPDQLNFVCALPLYHIF--ALTVCGL-----LGMRTGGRNILIPNPRDIPGFIKELKKY 300
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
P +N TL+N +N P DK+ F
Sbjct: 301 QVHIFP--------AVN-----------TLYNAL----LNN-----------PDFDKLDF 326
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436
K+ + GG G A P E +L + C + +GYGL+ET + +
Sbjct: 327 SKLIVANGG-------GMAVQRPVAERWLEMTGC-PITEGYGLSETSPVATCNPVDATEF 378
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
GT+G P+P+ +V S+ + + + L GE+C++G V +GY+ R D T +VM DG
Sbjct: 379 SGTIGLPLPSTEV---SIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADG 435
Query: 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524
+F TGD+G G KI+DRKK++ +S
Sbjct: 436 FFRTGDVGVMDERGYTKIVDRKKDMILVS 464
|
Length = 557 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 105 bits (266), Expect = 3e-24
Identities = 75/318 (23%), Positives = 122/318 (38%), Gaps = 83/318 (26%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ ++YTSG+TG PKGVMV + +V +A ++ LT+ D + + + F
Sbjct: 93 DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYG-----LTAGDRVLQFASFS--F 145
Query: 282 DRAIEEVFIS--NGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
D ++ E+F +GA + D + L E + E + T+ VP +L
Sbjct: 146 DASVWEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLL---------- 195
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
+ L + +L+ +I+ G A
Sbjct: 196 --------RALLDALEPAALPSLR----------------------------LVIVGGEA 219
Query: 396 PLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTV--GPPVPNVDVC-- 450
V + + A ++ YG TET T+ + + G+V G P+ N V
Sbjct: 220 LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVL 279
Query: 451 ---LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH--------T 499
L VP GE+ + G+ V GY R +LT E V F T
Sbjct: 280 DEDLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRT 331
Query: 500 GDIGEWQPDGSLKIIDRK 517
GD+ W PDG+L+ + R
Sbjct: 332 GDLARWLPDGNLEFLGRA 349
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-24
Identities = 121/515 (23%), Positives = 189/515 (36%), Gaps = 134/515 (26%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKC-GIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y++++ V + +R GV K + N +W+I AC G+ C+P+
Sbjct: 4 SYQQLWQEVDLLAEQLRALGV----KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
A + ++ +G ++S A
Sbjct: 60 AQQTQHLLNDAGAD------------------------LLISDDP--DAASALHT--PFA 91
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
D ++ L + PV+ I YTSG+TG PKGV +S + T + L
Sbjct: 92 TLGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALETV---AQSLA 145
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAI---------EEVFISNGAAIGFWRG----DVKL 305
E++ + ++ LPLA + + V + A +G G D
Sbjct: 146 EAIAI--LEPERHLCLLPLATLLENIAGVYAPLLMGATVILVPLAELGL-SGSSGLDPAQ 202
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
+ + +P VP++L L + G L + S +F
Sbjct: 203 FVAALSRWQPHSLILVPQLL----MALVAAVEQGPLPPE-------SLRF---------- 241
Query: 366 EASPIADKIVFDKVKQSFGGRV--RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423
+A V G RV L+ A P V +GYGL+E C
Sbjct: 242 ----VA-------VG---GARVSPSLLQRARALGLP-------------VYEGYGLSE-C 273
Query: 424 AGTFVSL--PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
A + VSL P G+VG P+P+V V S GE+ V+GS GY
Sbjct: 274 A-SVVSLNTPGA-DRPGSVGKPLPHVQV-------------SIANDGEILVRGSL-MLGY 317
Query: 482 YKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALV 541
T D W+ TGD+G +G L I RKKN+ S G V+ E +E+
Sbjct: 318 LGEPPAT-----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQA 372
Query: 542 SAIDSVWVYGNSFESFLVAIVNP----NKDALERW 572
AI V+G++ + FLVA++ P + D LE
Sbjct: 373 PAIAQAVVFGDA-QPFLVALIVPAPNISDDQLEAA 406
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 97/330 (29%), Positives = 148/330 (44%), Gaps = 60/330 (18%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSEDVYVS 273
PV K++D+ IMY+SGTTG KGV++++ N IA V+ + S E S++VY++
Sbjct: 193 PVIKQDDVAAIMYSSGTTGASKGVVLTHRN---LIAMVELFVRFEASQYEYPGSDNVYLA 249
Query: 274 YLPLAHIFDRAIEEV-FISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
LP+ HI+ ++ V +S G+ I R D +++ I K T F VP +L
Sbjct: 250 ALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL------ 303
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
L KK K V +KQ +
Sbjct: 304 -------MALTKKA-----------------KGVCGEV------LKSLKQ--------VS 325
Query: 392 SGAAPLTPH-VETFLRVVACAHVLQGYGLTETCA-GTFVSLPNEMSMIGTVGPPVPNVDV 449
GAAPL+ ++ F++ + +QGYG+TE+ A GT ++S +VG PN+
Sbjct: 326 CGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQA 385
Query: 450 CLESVPEMEYDA-LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQP 507
V + L GE+ ++G V GY T+ + DGW TGDI +
Sbjct: 386 ---KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDE 442
Query: 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
DG L I+DR K I K +G +A +LE +
Sbjct: 443 DGYLYIVDRLKEIIKY-KGFQIAPADLEAV 471
|
Length = 560 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 68/315 (21%), Positives = 115/315 (36%), Gaps = 87/315 (27%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D ++YTSG+TG PKGV++++ NI F+ +L + D + + +A F
Sbjct: 99 DDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILG-----IRPGDRVLQFASIA--F 151
Query: 282 DRAIEEVFIS--NGAAIGFWRGDVKLLLEDIGE----LKPTIFCAVPRVLDRIYSGLNQK 335
D +I E+F + G + +L LED+ E L+ T+ P +L +
Sbjct: 152 DVSILEIFTTLLAGGTL--VIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL------- 202
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
E P +R ++ G
Sbjct: 203 ----------------------------DPEDVP----------------SLRTLILGGE 218
Query: 396 PLTP-HVETFLRVVACAHVLQGYGLTETC--AGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452
V+ + + +L YG TE A P + +G P+PN +
Sbjct: 219 ACPQALVDRWSKPR---RLLNTYGPTEATVTATASRLTPGKPV---NIGRPLPNYTCWVL 272
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------DGW----FHTGDI 502
+ + GE+C+ G V GY R +LT E + + + TGD+
Sbjct: 273 DPDLEPLVPIGAV--GELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330
Query: 503 GEWQPDGSLKIIDRK 517
+ DGSL+ + RK
Sbjct: 331 VRYLEDGSLEFLGRK 345
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 92/319 (28%), Positives = 142/319 (44%), Gaps = 71/319 (22%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE---KLTSE--DVYVSYLP 276
+DI + YT GTTG KG M+++ N+V + V+ L + L E +V ++ LP
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLP 266
Query: 277 LAHIFDRAI----------EEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLD 326
L HI+ V I+N I G +K EL F A+
Sbjct: 267 LYHIYAFTANCMCMMVSGNHNVLITNPRDIP---GFIK-------ELGKWRFSAL----- 311
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
GLN TLF +A + P + F +K + G
Sbjct: 312 ---LGLN-----------TLF-VA--------------LMDHPGFKDLDFSALKLTNSG- 341
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN 446
G A + E + ++ C +++GYGLTET + E++ +GTVG PVP
Sbjct: 342 ------GTALVKATAERWEQLTGCT-IVEGYGLTETSPVASTNPYGELARLGTVGIPVPG 394
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEW 505
+ V + + + L RGE+C+KG V GY+++ + T E + +GWF TGDI
Sbjct: 395 TAL---KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVI 451
Query: 506 QPDGSLKIIDRKKNIFKLS 524
PDG ++I+DRKK++ +S
Sbjct: 452 DPDGFVRIVDRKKDLIIVS 470
|
Length = 562 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 101/337 (29%), Positives = 151/337 (44%), Gaps = 87/337 (25%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIA----GVKCLLESVNEKLTSEDVYVSYLPL 277
+D+ + Y+SGTTG PKGVM++++ +VT +A G E+ N S+DV + LP+
Sbjct: 179 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG-----ENPNLYFHSDDVILCVLPM 233
Query: 278 AHIFDRAIEEVFISN---GAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
HI+ ++ V + GAAI ++ LLE I K TI VP ++
Sbjct: 234 FHIY--SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIV-------- 283
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
IA SP+ +K +D +R++LSG
Sbjct: 284 -------------LAIA----------------KSPVVEK--YDL------SSIRMVLSG 306
Query: 394 AAPLTPHVETFLRVVACAHVL-QGYGLTETCAGTFVSLPNEMSMI----------GTVGP 442
AAPL +E R VL QGYG+TE AG ++ M + G+ G
Sbjct: 307 AAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLA----MCLAFAKEPFPVKSGSCGT 360
Query: 443 PVPNVDVCLESVPEMEYDALSSTPR---GEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498
V N ++ + ++ + +S PR GE+C++G + GY + T + DGW H
Sbjct: 361 VVRNAELKI-----VDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLH 415
Query: 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLE 535
TGDIG D L I+DR K + K +G VA LE
Sbjct: 416 TGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 451
|
Length = 537 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 101/468 (21%), Positives = 170/468 (36%), Gaps = 89/468 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + V + NA+R G+E + + ++ PE+ +G VP+ L
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S + + E+ + E+LK + HL+ ++ P
Sbjct: 92 DDYRYYLNDSRARVLVISEE-LWEVLKPALQKDPHLRHVIVVGGAGPGA----------- 139
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLL 258
L ++ + +D+ +Y+SG+TG PKGV+ + ++ VT A K +L
Sbjct: 140 -LSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVL 198
Query: 259 ESVNEKLTSEDVY--VSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK--LLLEDIGELK 314
+T +DV + L A+ + S GA + I K
Sbjct: 199 -----GITEDDVVFSAAKLFFAYGLGNGLYFPL-SVGATTVLMPERPTPDAVFATIERYK 252
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
PT+F VP TL+ +
Sbjct: 253 PTVFFGVP----------------------TLYA------------------------AM 266
Query: 375 VFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+ K +RL +S L + + + +L G G TE + P
Sbjct: 267 LAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA 326
Query: 434 MSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ GT G PVP +V L E V + E GE+ V+G + +GY+ R + T
Sbjct: 327 VKY-GTSGKPVPGYEVKLVDEDGEEVADGEI--------GELWVRGDSSAAGYWNRREKT 377
Query: 489 KEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVA---VEN 533
+E V W TGD DG R ++ K+S G +V+ VE+
Sbjct: 378 RETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVED 424
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 81/367 (22%), Positives = 135/367 (36%), Gaps = 76/367 (20%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ I++TSG+TG PKGV +S+ N+ +F+ + LT DV+ + P + F
Sbjct: 97 DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDF-----DLTEGDVFSNQAPFS--F 149
Query: 282 DRAIEEVF--ISNGAAIGFW------RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
D ++ ++F +++GA + + D L E + E T++ +VP
Sbjct: 150 DLSVFDLFPALASGATL--YVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASL------ 201
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
LL N +L+ F F G V L
Sbjct: 202 -------LLLSRELN---PESLPSLR---------------TF-----LFCGEV---LP- 227
Query: 394 AAPLTPHVETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEMSMIGT---VGPPVPNVDV 449
+ R A ++ YG TE T A T + E +G P P +
Sbjct: 228 ----KKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRA 283
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD----GWFHTGDIGEW 505
+ + + + GE+ + G V GY + T + W+ TGD+
Sbjct: 284 ---LILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYL 340
Query: 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWV---YGNSFESFLVAIV 562
+ DG L + RK KL G + +E +E + ++ V LVA V
Sbjct: 341 EDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFV 399
Query: 563 NPNKDAL 569
+ AL
Sbjct: 400 VGKEGAL 406
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 6e-22
Identities = 88/348 (25%), Positives = 136/348 (39%), Gaps = 78/348 (22%)
Query: 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277
D+ +MYTSGTT PKGVM S N+ K + + LT+ + + PL
Sbjct: 145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHW-----KSIDHVIALGLTASERLLVVGPL 199
Query: 278 AHI--FDRAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLD 326
H+ FD G A+ W G D + +L I + T P +L
Sbjct: 200 YHVGAFDLP--------GIAV-LWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLS 250
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
R+ P D+ D + GG
Sbjct: 251 RVL-------------------------------------TVPDRDRFDLDSLAWCIGGG 273
Query: 387 VRLILSGAAPLTPH--VETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPP 443
+ TP + F RV A + YGLTETC+G T + E+ IG+ G
Sbjct: 274 EK---------TPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRA 324
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503
+ +V++ + + L +GE+C++G V GY+K + T E WF +GD+G
Sbjct: 325 LAHVEI---RIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVG 381
Query: 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
+G L + DRKK++ +S GE +A +E + + + V G
Sbjct: 382 YLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIG 428
|
Length = 497 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 2e-21
Identities = 98/499 (19%), Positives = 162/499 (32%), Gaps = 112/499 (22%)
Query: 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN 93
+ APIP + +F P + + TY E+ ++
Sbjct: 217 NALAAPIPLRLTIHLLFEEQAATTP------DAVALVRGGQQL---TYAELDARANRLAR 267
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+ + GV I E ++ + A G VPL A + +I+ S ++
Sbjct: 268 LLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTL 327
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ 213
T HL R + +
Sbjct: 328 LL---------------TQAHL-------------RVDDVGLPGLALDDALSEIPDTDPI 359
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
+ + I+YTSG+TG PKGV + + + + L ++D ++
Sbjct: 360 PQA--LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFG-----LDADDRVLA 412
Query: 274 YLPLAHIFDRAIEEVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDR 327
L+ FD ++ E+F + GA + + D LLE + T+ VP +L
Sbjct: 413 LASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRL 470
Query: 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRV 387
+ + A+ D I S R+
Sbjct: 471 L------------------------------------LLAALAPDLI-------SPCERL 487
Query: 388 RLILSGAAPLTP-HVETFLRVVACAHVLQ-GYGLTE-TCAGTFVSLPNEMSMIGTVGPPV 444
R +LSG L V+ L++ A A L YG TE T + E+ +G PV
Sbjct: 488 RQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPV 547
Query: 445 PNVDVC-----LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFH 498
N + L +P GE+ + G + GY R DLT E + +
Sbjct: 548 ANTQLYILDQGLRPLPLGV--------PGELYIAGLGLALGYLNRPDLTAERFIALRLYR 599
Query: 499 TGDIGEWQPDGSLKIIDRK 517
TGD+ DG+L+ + RK
Sbjct: 600 TGDLARPLADGALEYLGRK 618
|
Length = 642 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-21
Identities = 86/338 (25%), Positives = 136/338 (40%), Gaps = 102/338 (30%)
Query: 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271
K+ P K +D TI+++SG+ G+PKGVM+S+ NI ++ ++ + + N L ++DV
Sbjct: 772 KRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNI---LSNIEQISDVFN--LRNDDVI 826
Query: 272 VS--------------YLPLAHIFDRAIEEVFISN---GAAIGFWRGDVKLLLEDIGELK 314
+S +LPL I+ V+ + I KL + + +
Sbjct: 827 LSSLPFFHSFGLTVTLWLPLL----EGIKVVYHPDPTDALGIA------KL----VAKHR 872
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
TI P L R+Y L+ + +
Sbjct: 873 ATILLGTPTFL-RLY----------------------------LR--------NKKLHPL 895
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+F + RL+++GA L P V +L+GYG TET V+LP+ +
Sbjct: 896 MFASL--------RLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVL 947
Query: 435 ---------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGE---VCVKGSTVFSGYY 482
S G+VG P+P V +V ++ + P GE + + G V GY
Sbjct: 948 AADFKRQTGSKEGSVGMPLPGV-----AVRIVDPETFEELPPGEDGLILIGGPQVMKGYL 1002
Query: 483 KREDLTKEVMVD----GWFHTGDIGEWQPDGSLKIIDR 516
+ T EV+ D GW+ TGD G DG L I DR
Sbjct: 1003 GDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDR 1040
|
Length = 1146 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 8e-21
Identities = 107/437 (24%), Positives = 169/437 (38%), Gaps = 95/437 (21%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK-CLLESVNEKLTSEDVYVSYLPLAHIF 281
+ ++TSG+TG PK V+ ++ + A + C E V V +LP H F
Sbjct: 165 TVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPP----VLVDWLPWNHTF 220
Query: 282 DRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL-----KPTIFCAVPRVLDRIYSGLNQKI 336
G F ++L + G L KP
Sbjct: 221 -----------GGNHNF-----NMVLYNGGTLYIDDGKPV-------------------- 244
Query: 337 SSGGLLKKTLFN---IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
GL ++TL N ++ + F N+ KG + + + D +++ F R+RL+
Sbjct: 245 --PGLFEETLRNLREVSPTVYF-NVPKGFEMLVDALERD----AALRRRFFKRLRLLFYA 297
Query: 394 AAPLTPHVETFLRVVACAHV------LQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVPN 446
A L V L+ +A G G TET TFV P + S G +G P P
Sbjct: 298 GAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS--GVIGLPAPG 355
Query: 447 VDVCLESVP-EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGE 504
++ L VP + EV VKG V GY++ +LT E +G++ GD
Sbjct: 356 TELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVR 404
Query: 505 WQ-PDGSLK--IID-RKKNIFKLSQGEYVAVENLENIYALVSAI-----DSVWVYGNSFE 555
+ PD + + D R FKL+ G +V+V L ALV+A+ D+V V G+
Sbjct: 405 FVDPDDPERGLVFDGRVAEDFKLASGTWVSVGALRV--ALVAALAPLVQDAV-VAGHD-R 460
Query: 556 SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIK 615
+ +V PN A R A + + +P +E + L+ + G +
Sbjct: 461 DEIGLLVFPNLAACRRLAG--LAEASAEDVLAHPAVREALAARLAAHNRAA--TGSTRVT 516
Query: 616 AVHLEPVPFDIERDLLT 632
L P I+ +T
Sbjct: 517 RALLLAEPPSIDAGEIT 533
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 3e-20
Identities = 98/463 (21%), Positives = 163/463 (35%), Gaps = 123/463 (26%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + ++ +R GV + PE ++ + A G VPL A
Sbjct: 14 TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ F++ SG + +E ++ L +
Sbjct: 74 ERLAFMLEDSGARVLLTDES--------------------------LAPLARADQLPLVI 107
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV------TFIAG 253
+ + P +D+ +MYTSG+TG PKGV V + +V +IA
Sbjct: 108 LEEELDAEDAGP---PAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYIA- 163
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGFWRGDVKLLLEDIG 311
L +D ++ PL+ FD + E++ + NG +L+L D
Sbjct: 164 -----------LDPDDRFLQLSPLS--FDASTFEIWGALLNGG---------RLVLIDKE 201
Query: 312 ELK-PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
L P + R++ Q ++ L LFN V+ P
Sbjct: 202 TLLDPD---RLARLIAE------QGVTV-LWLTAALFNQL--------------VDEDP- 236
Query: 371 ADKIVFDKVKQSFGGRVRLILSG--AAPLTPHVETFLRVVACAHVLQGYGLTE--TCAGT 426
++ G +R +L G HV L ++ GYG TE T +
Sbjct: 237 ----------EALAG-LRQLLVGGDVLSP-AHVRRVLAACPGLRLINGYGPTENTTFSTC 284
Query: 427 FVSLPNEMSMIGTV--GPPVPNVDVCLESVPEMEYDALSSTPR----GEVCVKGSTVFSG 480
V + + ++ G P+PN V + D GE+ V G + G
Sbjct: 285 HVITRLDEA-ADSIPIGRPIPNTTVYI-------LDEEGQPVPIGVPGELYVGGDGLALG 336
Query: 481 YYKREDLTKEVMVD-----G--WFHTGDIGEWQPDGSLKIIDR 516
Y R +LT E V G + TGD+ W+PDG+++ + R
Sbjct: 337 YLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGR 379
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-20
Identities = 113/429 (26%), Positives = 189/429 (44%), Gaps = 79/429 (18%)
Query: 201 SWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+W E L+ + D + D+C + ++SGTTG KGVM+++ N+V A + L
Sbjct: 161 NWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLV---ANLCSSL 217
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
SV ++ + V + +P HI+ G R K+++ EL+ F
Sbjct: 218 FSVGPEMIGQVVTLGLIPFFHIYGIT--------GICCATLRNKGKVVVMSRFELR--TF 267
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
+ + + Q++S ++ + N+ +PI ++ K
Sbjct: 268 ---------LNALITQEVSFAPIVPPIILNLV----------------KNPIVEEFDLSK 302
Query: 379 VKQSFGGRVRLILSGAAPLTPHVET-FLRVVACAHVLQGYGLTE-TCAGTFVSLPNEMSM 436
+K ++ I++ AAPL P + T F V + YGLTE +C P +
Sbjct: 303 LK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHG 356
Query: 437 IG---TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYY-KREDLTKEVM 492
I +VG +PN++V P+ +TP GE+CV+ V GYY +E+ + +
Sbjct: 357 IAKKNSVGFILPNLEVKFID-PDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTID 414
Query: 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGN 552
DGW HTGDIG DG + I+DR K + K +G VA LE I +++ V
Sbjct: 415 EDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV--- 470
Query: 553 SFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEF---ILGEL-SRVAKEKKL 608
+ P+++A E AA + NPKAKE IL + + VA KK+
Sbjct: 471 --------VPLPDEEAGEIPAA---------CVVINPKAKESEEDILNFVAANVAHYKKV 513
Query: 609 KGFEFIKAV 617
+ +F+ ++
Sbjct: 514 RVVQFVDSI 522
|
Length = 546 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 6e-20
Identities = 86/334 (25%), Positives = 122/334 (36%), Gaps = 110/334 (32%)
Query: 229 YTSGTTGDPKGV--------MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
YTSGTTG+PKGV + + NI+ + + VY+ LP+ H
Sbjct: 189 YTSGTTGNPKGVVYHHRGAYLNALSNILAW-------------GMPKHPVYLWTLPMFHC 235
Query: 281 ----FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
F + G + + D KL+ + I E T +C P VL
Sbjct: 236 NGWCFPWTVA---ARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLS---------- 282
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
L N +P + D V +++GAAP
Sbjct: 283 --------ALIN-------------------APAEWRAGID-------HPVHAMVAGAAP 308
Query: 397 LTPHVETFLRVVACA-----HVLQGYGLTET------CA--GTFVSLPNE-----MSMIG 438
P V+A + YGLTET CA + +LP + + G
Sbjct: 309 --P-----AAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG 361
Query: 439 TVGPPVPNVDVCLESVPEMEYDALSSTPR-----GEVCVKGSTVFSGYYKREDLTKEVMV 493
P E V ++ D + P GE+ +G+ V GY K T+E
Sbjct: 362 VRYPL-------QEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA 414
Query: 494 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGE 527
GWFHTGD+ PDG +KI DR K+I +S GE
Sbjct: 415 GGWFHTGDLAVLHPDGYIKIKDRSKDII-ISGGE 447
|
Length = 545 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 8e-20
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 413 VLQGYGLTETCAGTFVSLPNEMSM--IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470
V Q YG+TET + V+L E ++ +G+ G P+ ++ +E + + GE+
Sbjct: 281 VYQSYGMTETAS-QIVTLSPEDALTKLGSAGKPLFPCELKIEK----DGVVVPPFEEGEI 335
Query: 471 CVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVA 530
VKG V GY RED T+E DGWF TGDIG +G L ++DR+ ++ +S GE +
Sbjct: 336 VVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIY 394
Query: 531 VENLENIYALVSAIDSVWVYGNSFES-------FLVAIVNPNKDALERWAAEN 576
+E + + V G + F+V ++ L + E
Sbjct: 395 PAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEK 447
|
Length = 483 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 3e-19
Identities = 80/329 (24%), Positives = 130/329 (39%), Gaps = 80/329 (24%)
Query: 227 IMYTSGTTGDPKGVMVSNENI----VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
I++TSGT+G PKGVM+S N+ F V ++ + ++ P+ HI
Sbjct: 140 ILFTSGTSGQPKGVMLSERNLQQTAHNF---------GVLGRVDAHSSFLCDAPMFHI-- 188
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
IG I ++P + G + +S+G
Sbjct: 189 -------------IGL-----------ITSVRPVLA-----------VGGSILVSNGFEP 213
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASP-----IADKIVFDKVKQSFGGRVRLILSGAAPL 397
K+TL + + G H P + FD + + + +G AP
Sbjct: 214 KRTLGRLG------DPALGITHYFCVPQMAQAFRAQPGFDA---AALRHLTALFTGGAP- 263
Query: 398 TPHVETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMI----GTVGPPVPNVDVCL 451
H + + ++ G+G++E AGT + + +I G G P P V
Sbjct: 264 --HAAEDILGWLDDGIPMVDGFGMSE--AGTVFGMSVDCDVIRAKAGAAGIPTPTVQ--T 317
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGS 510
V + D + P GE+ ++G + GY++R T DGWF TGDI DG
Sbjct: 318 RVVDDQGNDCPAGVP-GELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGF 376
Query: 511 LKIIDRKKNIFKLSQGEYVAVENLENIYA 539
++DRKK++F +S GE V +E + A
Sbjct: 377 FWVVDRKKDMF-ISGGENVYPAEIEAVLA 404
|
Length = 488 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 8e-19
Identities = 73/349 (20%), Positives = 125/349 (35%), Gaps = 78/349 (22%)
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+S ++ L +LP D+ + GTTG PK + ++ + ++ + E
Sbjct: 122 FSGFDYAALARELLEELP-----DVALFQLSGGTTGLPKLIPRTHND---YLYSARASAE 173
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRA---IEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
+ L VY++ LP AH F + + ++ G + + I K T
Sbjct: 174 AC--GLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVT 231
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
VP +L+ +EA+
Sbjct: 232 HTALVPALLNLW------------------------------------LEAAEWDQ---A 252
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEM 434
D +R+I G APL+P + + C + Q +G+ E T + P ++
Sbjct: 253 DL------SSLRVIQVGGAPLSPELARRVEERLGCP-LQQVFGMAEGLVNYTRLDDPPDV 305
Query: 435 SMIGTVGPPVPN------VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
M T G P+ VD E VP E GE+ +G GYY+ +
Sbjct: 306 IM-RTQGRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHN 356
Query: 489 KEVMV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLEN 536
DG++ TGD+ DG +++ R K+ GE ++ E +EN
Sbjct: 357 ARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRG-GEKISPEEIEN 404
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 80/324 (24%), Positives = 119/324 (36%), Gaps = 93/324 (28%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI-- 280
D+ +T GTTG PK S+ N V A + LL + DV ++ LPL H+
Sbjct: 3 DLAAYFHTGGTTGAPKLARHSHRNEVA-NAWMAALLSGLGP----GDVLLNGLPLFHVGG 57
Query: 281 --------FDRAIEEVFIS-----NGAAIG-FWRGDVKLLLEDIGELKPTIFCAVPRVLD 326
R V + N A + FW+ ++E + T+ AVP VL
Sbjct: 58 AIVTGLAPLARGATVVLPTPSGFRNPAVVANFWK-----IVER---YRVTLLSAVPTVL- 108
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
LL+ P+ D +
Sbjct: 109 ------------AALLQ------------------------VPLGDADI---------SS 123
Query: 387 VRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
+R L+GAAPL V F V V++GYG+TE + ++ G+VG +P
Sbjct: 124 LRYALTGAAPLPVEVARRFEAVTGV-PVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLP 182
Query: 446 --NVDVCLESVPEMEYDALSSTPR-------GEVCVKGSTVFSGYYKREDLTKEVMVDGW 496
V V + DA + R G + ++G VF GY + DGW
Sbjct: 183 YTRVRV-------AKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGW 235
Query: 497 FHTGDIGEWQPDGSLKIIDRKKNI 520
+TGD+G DG L + R K++
Sbjct: 236 LNTGDLGRIDADGYLWLTGRAKDL 259
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-18
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 386 RVRLILSGAAPLTPHVETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
+R + P R V +++GYG+TET P + + G+ G P
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERFGVK----LVEGYGMTETGVPIIA--PGDPAPPGSCGRP 250
Query: 444 VPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDG 495
P V+V + VP E GE+ V+ +F GYY + T + +G
Sbjct: 251 RPGVEVRIVDEDGREVPPGE--------VGELVVRPRRPWAMFKGYYGMPEATAKAWRNG 302
Query: 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
WFHTGD G DG L +DRKK+ + GE ++ +E A+ V
Sbjct: 303 WFHTGDRGRRDEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA 357
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 4e-18
Identities = 88/349 (25%), Positives = 141/349 (40%), Gaps = 57/349 (16%)
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
G + P +D+ + YT GTTG PKG M+++ N+ + ++ + + T
Sbjct: 179 GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYD--VWGKPSRATRG 236
Query: 269 DVY--VSYLPLAHIFDRAIEEVFIS---NGAAIGF-WRGDVKLLLEDIGELKPTIFCAVP 322
DV + LPL HI+ A+ + + G I R DV + DI E + T+F VP
Sbjct: 237 DVERVICVLPLFHIY--ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVP 294
Query: 323 RVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQS 382
T++ IA + P +K +
Sbjct: 295 ----------------------TMW-IA--------------LANDPSLEKRDLSSLA-- 315
Query: 383 FGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442
I SG APL V F + G+G+TETC+ P G++G
Sbjct: 316 ------TIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGL 369
Query: 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDI 502
+P +++ + S+ + L GE+ ++G V GY+ R + + E V F TGDI
Sbjct: 370 MLPGIELDVVSLDDPT-KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDI 428
Query: 503 GEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
G DG ++DRKK++ +S G V + +E + V V G
Sbjct: 429 GYMDTDGYFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 6e-18
Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 41/287 (14%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D+ R + R P+ L + W TY E+ V +V A+ G+++ +
Sbjct: 15 DILRRSARRYPDKTALVFGDRS--------W-TYAELDAAVNRVAAALLDLGLKKGDRVA 65
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
G N + + AC G VP+ L + +I+ HSG V+ P + T
Sbjct: 66 ALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVD----PALAPT 121
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
L + RE + ++ + G + D+ + +D+ I
Sbjct: 122 AEAALALLPVDTLILSLVLGGRE----APGGWLDFADWAEAGSVAEPDVEL-ADDDLAQI 176
Query: 228 MYTSGTTGDPKGVMVSNENIV-----TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+YTSGT PKG M+++ ++ +AG ++++D+ + LPL H
Sbjct: 177 LYTSGTESLPKGAMLTHRALIAEYVSCIVAG----------DMSADDIPLHALPLYHC-- 224
Query: 283 RAIEEVFISNGAAIGFW-----RGDVKLLLEDIGELKPTIFCAVPRV 324
A +VF+ +G D +L+L I + T F A P V
Sbjct: 225 -AQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTV 270
|
Length = 523 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 6e-18
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV 447
+++ G A L P V L+ + +GYGLTET T + P+ +G PV
Sbjct: 202 KVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKP-QCLGIPVFGT 260
Query: 448 D--VC-LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTG 500
D V E+ E L GE+ V+G VF GY+ R + T E + +F TG
Sbjct: 261 DARVIDPETGEE-----LPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTG 315
Query: 501 DIGEWQPDGSLKIIDRKKNIFKLS 524
D+G +G +DR K + +S
Sbjct: 316 DLGYIDEEGYFFFLDRVKRMINVS 339
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-17
Identities = 81/368 (22%), Positives = 138/368 (37%), Gaps = 88/368 (23%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D+ I+YTSG+TG+PKGVM+S+ N+ + LE LT +D ++ LP + FD
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFS--FD 55
Query: 283 ----------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
R + + + A DV L+ + + + T F VP ++ L
Sbjct: 56 YGLSQLLTAFRVGGTLVLESRFAFP---RDV---LKHLAKERITGFAGVPT----TWAQL 105
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
L+ F +L+ L +
Sbjct: 106 ---------LRLDPL---AREDFPSLR----------------------------YLTNA 125
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM--SMIGTVGPPVPNVDVC 450
G A + R A + YGLTE T+ LP E ++G +PNV++
Sbjct: 126 GGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTY--LPPEELDRRPDSIGKAIPNVELW 183
Query: 451 LESVPEMEYDALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMV------DGWFHTGDI 502
+ ++ D P GE+ +G+ V GY+ + T E + + +TGD+
Sbjct: 184 V-----VDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238
Query: 503 GEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESF---LV 559
+G L + RK ++ K ++G V+ +E + + V G +V
Sbjct: 239 VRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIV 297
Query: 560 AIVNPNKD 567
A+V
Sbjct: 298 AVVVSADG 305
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-17
Identities = 100/410 (24%), Positives = 160/410 (39%), Gaps = 90/410 (21%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH-- 279
+ I ++TSG+TG PK V+ ++ + A + L ++ V V +LP H
Sbjct: 209 DTIAKFLFTSGSTGLPKAVINTHRMLC---ANQQMLAQTFPFLAEEPPVLVDWLPWNHTF 265
Query: 280 ----IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
+ NG + I + KPT P
Sbjct: 266 GGNHNLGIVLY-----NGGTL------------YIDDGKPT-----P------------- 290
Query: 336 ISSGGLLKKTLFN---IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
G +TL N I+ + F N+ KG + + + D +++ F R++L+
Sbjct: 291 ----GGFDETLRNLREISPTVYF-NVPKGWEMLVPALERD----AALRRRFFSRLKLLFY 341
Query: 393 GAAPLTPHVETFLRVVACAHV------LQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVP 445
A L+ V L VA A + G G+TET + TF + P + G +G P P
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRA--GNIGLPAP 399
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGDIGE 504
+V L VP + EV VKG V GY++ +LT E + G++ +GD
Sbjct: 400 GCEVKL--VP---VGG-----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVR 449
Query: 505 W----QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAI-----DSVWVYGNSFE 555
+ P+ L R FKLS G +V+V L VSA D V + G+ +
Sbjct: 450 FVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRA--RAVSAGAPLVQDVV-ITGHDRD 506
Query: 556 SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKE 605
+ +V PN DA R A + + +P + L+R+ +
Sbjct: 507 -EIGLLVFPNLDACRRLAGL-LADASLAEVLAHPAVRAAFRERLARLNAQ 554
|
Length = 614 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 7e-17
Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 60/368 (16%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262
+ + ++ L V + +DI +YTSGTTG PKGVM + + +TF
Sbjct: 72 QDLEHILDDSGAALLVTEADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAE----AFAREL 127
Query: 263 EKLTSEDVYVSYLPLAHIFDRAIEEVF-ISNGAAIGFWRG--DVKLLLEDIGELKPTIFC 319
L D S L + +F + +GA+ G + +L+ + +PT+
Sbjct: 128 LGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLF 187
Query: 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV 379
VP + Y L + SG + F +++ EA P + ++
Sbjct: 188 GVPAL----YRAL---LESGAG---------SAPLFRSVRLCVSAGEALPAG---LAERW 228
Query: 380 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439
++ G + L G G TE F+S + GT
Sbjct: 229 AEATGIEI--------------------------LDGIGSTEV-LHIFISNRPGAARPGT 261
Query: 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHT 499
G PVP + L V E + + T G++ V+G ++ GY+ + T+ + DGW T
Sbjct: 262 TGRPVPGYEARL--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRT 318
Query: 500 GDIGEWQPDGSLKIIDRKKNIFKLSQGEYVA---VENLENIYALVSAIDSVWVYGNSFES 556
GD DG + R ++ K+S G++V+ VE + V+ V V
Sbjct: 319 GDRFSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLV 377
Query: 557 FLVAIVNP 564
L A V P
Sbjct: 378 RLKAFVVP 385
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 7e-17
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 62/238 (26%)
Query: 385 GRVRLILSGAAPLTPHV-ETFLRVVA----CAHVLQ-GYGLTETCAGTFVSL----PNEM 434
+R I++ + FL ++A A ++ +G++ETC+G S +
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348
Query: 435 SMIGT----------------------VGPPVPNVDV-----CLESVPEMEYDALSSTPR 467
+ +G P+P V + +PE E
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGE--------V 400
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
G + V+G TV SGYY+ + E DGWF TGD+G DG L I R+K++ ++
Sbjct: 401 GRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DGRLTITGREKDMIIINGV 459
Query: 527 EYVAVENLENIYALVSAID----------SVWVYGNSFESFLVAIVNPNKDALERWAA 574
Y E I A V + +V G+ + L P D +R AA
Sbjct: 460 NYYNHE----IEAAVEQVPGVEPSFTAACAVRDAGSGTDE-LAVFFVPRYDLDDRLAA 512
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
RL++SG+A L V L + ++ YG+TET E G VG P+
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-GWVGLPL 299
Query: 445 PNVDVCL--ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGD 501
V+ L E + +D + GE+ V+G T+F GY R D T DGWF TGD
Sbjct: 300 AGVETRLVDEDGGPVPHDGETV---GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGD 356
Query: 502 IGEWQPDGSLKIIDRK 517
+ PDG +I+ R+
Sbjct: 357 VAVVDPDGMHRIVGRE 372
|
Length = 471 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-16
Identities = 122/635 (19%), Positives = 232/635 (36%), Gaps = 82/635 (12%)
Query: 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC 98
P+ G+ S +++ +V R+ R LGQ ++G+ W TY V ++ + +
Sbjct: 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS----ESGESEWLTYGTVDARARELGSGLLAL 477
Query: 99 GVEERGKCGIYGVNCP---EWIIGMEACNALGLHCVPLYDTLGAG-AVEFIICHSGVSIA 154
GV + GV+C +I AC G +PL +G G + +I + +
Sbjct: 478 GV---RPGDVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVV 531
Query: 155 FVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK-YGLAVYSWDEFLQLGENKQ 213
F + + +L + L+T+V E + + + + ++ Q G
Sbjct: 532 FADRNSVAAILTC---RSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCP 588
Query: 214 FDLPVKKKNDICTIMY----TSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED 269
L D TS + V V++ +++ I+ + ++ V +
Sbjct: 589 VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTL--VMTGVLPSSFKKH 646
Query: 270 VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
+ V + P A +F+R ++G+A+ D L + +PTI A P +
Sbjct: 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSR 704
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
L++ + LF A+ + + + H S + I F ++ GG V
Sbjct: 705 LQLSRANERYSAVYSWLFERAFQLR---SRLINIHRRDSSLLRFIFFRATQELLGGCVEK 761
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG------PP 443
I V+ + + L E + +V E+ + + G P
Sbjct: 762 I----------------VLCVSEESTSFSLLEHISVCYVPCLREVFFLPSEGVFCVDGTP 805
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503
P++ V LE E P + G V + + T I
Sbjct: 806 APSLQVDLEPFDE---------PSDGAGI-GQLVLAKKGEPR------------RTLPIA 843
Query: 504 -EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIV 562
+W+ D +L+++ I EYV LE I++ ++ +++Y + ++AIV
Sbjct: 844 AQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIV 902
Query: 563 NPNKDALE-RW-AAENGVNGDFKSLCENPK-----AKEFILGELSRVAKEKKLKGFEFIK 615
+PN+D +E W + G + A + + + +AKE L +
Sbjct: 903 SPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPE 962
Query: 616 AVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650
VHL P F LTP K +R + ++
Sbjct: 963 YVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVI 997
|
Length = 1452 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 3e-16
Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 71/344 (20%)
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
++ +D P +N ++ YTSGTTG+PKG + S+ + V G L +++ L++
Sbjct: 163 AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYG-AALPDAMG--LSAR 219
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVL 325
D + +P+ H+ + GA + G D K L E I + T VP V
Sbjct: 220 DAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEAERVTFSAGVPTV- 277
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ GL + GL +F L+
Sbjct: 278 ---WLGLLNHMREAGL------------RFSTLR-------------------------- 296
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GTFVSLPNE---------MS 435
R ++ G+A + TF V+ +G+TE GT L +
Sbjct: 297 --RTVIGGSACPPAMIRTFEDEYG-VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRK 353
Query: 436 MIGTVGPPVPNVDVCL--ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV 493
++ G + VD+ + + E+ +D + G++ V+G V Y++ + +V
Sbjct: 354 LLEKQGRVIYGVDMKIVGDDGRELPWDGKAF---GDLQVRGPWVIDRYFRGDA---SPLV 407
Query: 494 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
DGWF TGD+ DG ++I DR K++ K S GE+++ ++EN+
Sbjct: 408 DGWFPTGDVATIDADGFMQITDRSKDVIK-SGGEWISSIDIENV 450
|
Length = 539 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-16
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Query: 386 RVRLILSGAAPLTP--HVETFLRVVACAH-VLQGYGLTETCAGTFVSLPNEMSMI-GTVG 441
+RL +SG+APL H E R H +L+ YG+TET T S P + GTVG
Sbjct: 270 HMRLFISGSAPLLAETHREFQERT---GHAILERYGMTETNMNT--SNPYDGERRAGTVG 324
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLTKEVM-VDGWF 497
P+P V S+ + + + P GE+ VKG VF GY++ + T E DG+F
Sbjct: 325 FPLPGV-----SLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFF 379
Query: 498 HTGDIGEWQPDGSLKIIDRKK 518
TGD+G+ G + I+ R K
Sbjct: 380 ITGDLGKIDERGYVHIVGRGK 400
|
Length = 504 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 9e-16
Identities = 109/460 (23%), Positives = 163/460 (35%), Gaps = 104/460 (22%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI- 280
+D I +TSGTTG PKGV +S+ ++ V+ L + +DVY+ PL HI
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALI-----VQSLAKIAIVGYGEDDVYLHTAPLCHIG 226
Query: 281 -FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL-DRIYSGLNQKISS 338
A+ + + + + D K L+ I + T VP ++ D I
Sbjct: 227 GLSSALAMLMVG-ACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWK 285
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398
+ + N G +L A L
Sbjct: 286 VFPSVRKILNGG---------------------------------GSLSSRLLPDAKKLF 312
Query: 399 PHVETFLRVVACAHVLQGYGLTETCAG-TFVSL--PNEMSMIGT---------------- 439
P A + YG+TE C+ TF++L P S T
Sbjct: 313 P----------NAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQ 362
Query: 440 ---VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
VG P P+V E++ S+ G + +G V GY+ + T V+ DG
Sbjct: 363 GVCVGKPAPHV--------ELKIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDG 414
Query: 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE 555
W TGDIG G+L +I R + K + GE V E +E + + + SV V G +
Sbjct: 415 WLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVASVVVVGVP-D 472
Query: 556 SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGE--LSRVAKEKKLKGFEF 613
S L +V + W + + K K L L +EK L F+
Sbjct: 473 SRLTEMVVACVRLRDGWIWSDNEKENAK--------KNLTLSSETLRHHCREKNLSRFKI 524
Query: 614 IKAVHLEPVPFDIERDLLTPTYKKKRPQL----LKHYQVT 649
K PF LT T K +R ++ L H Q
Sbjct: 525 PKLFVQWRKPFP-----LTTTGKIRRDEVRREVLSHLQSL 559
|
Length = 563 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 83/331 (25%), Positives = 123/331 (37%), Gaps = 70/331 (21%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL--AHI 280
D IM+T GTTG PK V ++ NI + + + L+ D V+ +PL H
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYR-----LSPRDATVAVMPLYHGHG 231
Query: 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338
A+ S GA + RG +DI + T + AVP +
Sbjct: 232 LIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTI-------------- 277
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR----VRLILSGA 394
H +I+ ++ GR +R I S +
Sbjct: 278 -------------------------H--------QILLERAATEPSGRKPAALRFIRSCS 304
Query: 395 APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG-TVGPPVPNVDVCLES 453
APLT L+ A V+ +G+TE T ++ IG T P V V +
Sbjct: 305 APLTAETAQALQTEFAAPVVCAFGMTEA---THQVTTTQIEGIGQTENPVVSTGLVGRST 361
Query: 454 VPEMEY---DALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD 508
++ D L GEV ++G+TV GY +T DGW TGD+G
Sbjct: 362 GAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAA 421
Query: 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYA 539
G L I R K + GE ++ E +E + A
Sbjct: 422 GDLSIRGRIKELINRG-GEKISPERVEGVLA 451
|
Length = 534 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-15
Identities = 69/323 (21%), Positives = 111/323 (34%), Gaps = 89/323 (27%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS--------- 273
D + +TSGTTG PK V+ ++ + + L+ L +D++ +
Sbjct: 82 DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLD-----LRPDDLHWTIADPGWAKG 136
Query: 274 -----YLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVL 325
+ P GAA+ + G D + LE + T FCA P
Sbjct: 137 AWSSLFAPWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY 183
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ L Q +SS Y F
Sbjct: 184 RML---LQQDLSS--------------YDF-----------------------------S 197
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
+R ++S PL P V + R + GYG TET + P G++G P P
Sbjct: 198 HLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGL-LVANFPGMEVKPGSMGRPAP 256
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGST----VFSGYYKREDLTKEVMVDGWFHTGD 501
V ++ + E + L G++ V+ +F GY K + T+ + W+ TGD
Sbjct: 257 GYRV---AIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGD 313
Query: 502 IGEWQPDGSLKIIDRKKNIFKLS 524
DG + R ++ K S
Sbjct: 314 RAIKDEDGYFWFVGRADDVIKSS 336
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-15
Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 14/215 (6%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
++D G + T+ ++ +++ +R G+++ + N E+ C A G
Sbjct: 2 LIDADTGTEL--TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAG 59
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
+ + + S + F + ++ ++ + + ++ IV S
Sbjct: 60 GIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPD-- 117
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVSNEN 246
L + E E++ P+ K+D ++Y+SGTTG PKGVM+S++N
Sbjct: 118 -------GVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKN 170
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
I+ ++ V+ L+ +S DV +++LP H +
Sbjct: 171 IIANLSQVQDTLK--GNPDSSNDVVLTFLPFYHAY 203
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 5e-15
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 39/245 (15%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVAC----AHVLQGYGLTETCAGTFVSLPNE-MSMIGTV 440
+R++ GAAP + T LR +A A +L +G TE T + L + + +G+V
Sbjct: 291 ALRVLSWGAAPASD---TLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347
Query: 441 GPPVPN-----VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
G +P VD + VP E GE+ + T+ SGY+ + T E G
Sbjct: 348 GKVIPTVAARVVDENMNDVPVGEV--------GEIVYRAPTLMSGYWNNPEATAEAFAGG 399
Query: 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE 555
WFH+GD+ +G + ++DRKK++ +S GE + +EN+ A I V V G + E
Sbjct: 400 WFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLASHPDIVEVAVIGRADE 458
Query: 556 SF---LVAIVNPNK-------DALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKE 605
+ VA+ + L + + +K +PKA E I+ L R
Sbjct: 459 KWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLAR--YK----HPKALE-IVDALPRNPAG 511
Query: 606 KKLKG 610
K LK
Sbjct: 512 KVLKT 516
|
Length = 542 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-14
Identities = 100/471 (21%), Positives = 157/471 (33%), Gaps = 94/471 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ V + N + + GV N PE + A G+ P+ L
Sbjct: 60 TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGIAN-PINPLLEP 118
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT------------EHLKTIVSFS---KV 184
+ ++ +G + L FP T L+T+V +
Sbjct: 119 EQIAELLRAAGAKVLVT--------LGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYL 170
Query: 185 KPEQREEI----EKYGLAVYSWDEFL-QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
+R + K + +D L + ++ F +D+ +T GTTG PK
Sbjct: 171 PGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKL 230
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGF 298
++ N V LL L D LPL H+ ++ GA +
Sbjct: 231 AQHTHGNEVANAWLGALLL-----GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVL 285
Query: 299 -----WRGD--VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351
+RG + + + + VP V Y+ L Q
Sbjct: 286 ATPQGYRGPGVIANFWKIVERYRINFLSGVPTV----YAALLQV---------------- 325
Query: 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVAC 410
P+ + +R L GAAPL V F
Sbjct: 326 -----------------PVDGHDI---------SSLRYALCGAAPLPVEVFRRFEAATG- 358
Query: 411 AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470
+++GYGLTE + V+ P+ IG+VG +P V + + + L EV
Sbjct: 359 VRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDD-AGRYLRDCAVDEV 417
Query: 471 ---CVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKK 518
C+ G VFSGY + + DGW +TGD+G DG + R K
Sbjct: 418 GVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAK 468
|
Length = 632 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 129/542 (23%), Positives = 206/542 (38%), Gaps = 121/542 (22%)
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---EMLKTFPKTTEH-----LKTIV 179
++CV + L A + F++ HS + V+++ E LK + + L ++
Sbjct: 97 VNCVNI--RLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVI 154
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
P+ + G Y ++FL+ G+ + P + + YTSGTT PKG
Sbjct: 155 GDPTCDPKSLQYALGKGAIEY--EKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKG 212
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI----FDRAIEEVFISNGAA 295
V++ + A + L ++ + VY+ LP+ H F + + G
Sbjct: 213 VVLHHRG-----AYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAAL---CGTN 264
Query: 296 IGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355
I + K + I T FCA P VL+ T+ N
Sbjct: 265 ICLRQVTAKAIYSAIANYGVTHFCAAPVVLN------------------TIVN------- 299
Query: 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-----ETFLRVVAC 410
+P ++ I+ V ++ +GAAP P V E RV
Sbjct: 300 ------------APKSETIL------PLPRVVHVMTAGAAP-PPSVLFAMSEKGFRV--- 337
Query: 411 AHVLQGYGLTETCAGTFV--------SLPNE----------MSMIGTVGPPVPNVDV-CL 451
H YGL+ET + V SLP E + IG G V VD +
Sbjct: 338 THT---YGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV--VDTKTM 392
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSL 511
+ VP GE+ ++G+ V GY K +E +GWFH+GD+G PDG +
Sbjct: 393 KPVPA------DGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYI 446
Query: 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNPNKDA 568
+I DR K+I +S GE ++ +EN+ A+ V E + A V K
Sbjct: 447 EIKDRSKDII-ISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTL-KPG 504
Query: 569 LERWAAENGVNGDFKSLCEN-------PKAKEFILGELSRVAKEKKLKGFEFIKAVHLEP 621
+++ + E + D C PK+ + G L + A K K KA + P
Sbjct: 505 VDK-SDEAALAEDIMKFCRERLPAYWVPKS--VVFGPLPKTATGKIQKHVLRAKAKEMGP 561
Query: 622 VP 623
V
Sbjct: 562 VK 563
|
Length = 567 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-14
Identities = 79/359 (22%), Positives = 121/359 (33%), Gaps = 97/359 (27%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH--- 279
D +YTSGTTG PK ++S+ + A L L +DV LPL H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLG-----LLKPDDVLYLCLPLYHSNA 136
Query: 280 -IFDRAIEEVFISNGAAI---------GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
+ ++ GA++ FW D+ T F V + +
Sbjct: 137 LTVGWS---SALAAGASLALRRKFSASQFWP--------DVRRYGATAFQYVGELCRYL- 184
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
LNQ + H L+K P ++D+ K+ FG
Sbjct: 185 --LNQPEKPDD-------------RDHPLRKIIG-NGLRPD----IWDEFKERFG----- 219
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP------ 443
+++ YG TE F++L N G VG
Sbjct: 220 --------------------VPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLPPAAIA 255
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEV---CVKGSTV--FSGYYKREDLTKEVMV----- 493
V DV E P GEV + + F GY E K+++
Sbjct: 256 VVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKK 315
Query: 494 -DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
D +F+TGD+ G +DR + F+ +GE V+ +E + A ++ VYG
Sbjct: 316 GDAYFNTGDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEEANVYG 373
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 8e-14
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 417 YGLTET-CAGTFVS--LPNEMSMIGT---VGPPVPNVD--VCLESVPEMEYDALSSTP-- 466
+G+TET TF + ++ ++ VG PVP + +C +++ P
Sbjct: 360 WGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKIC-------DFETGELLPLG 412
Query: 467 -RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQ 525
GE+ V+ ++ GY+ + + T E + DGW HTGDIG+ G L + R+K + K++
Sbjct: 413 AEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN- 471
Query: 526 GEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNP------NKDALERWAAEN 576
G V +E + A+ V G VA V AL+ W EN
Sbjct: 472 GMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCREN 531
|
Length = 567 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-13
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY + + V+ + + +R G+ + IY E + M G VP+ L A
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
V I+ V + V + ++L L+T++ P E G
Sbjct: 87 EQVAHILADCNVRL-LVTSSERLDLLHPALPGCHDLRTLIIVGD--PAHASEGHP-GEEP 142
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
SW + L LG+ +D+ I+YTSG+TG PKGV++S+ N+V V LE
Sbjct: 143 ASWPKLLALGD--ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200
Query: 260 SVNEKLTSEDVYVSYLPLAHIFD 282
+D ++ LPL+ FD
Sbjct: 201 -----NRPDDRLLAVLPLS--FD 216
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-13
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL--PNEMSMIGTVGPP 443
+R L AP+ + R A ++ +G+TE A T L P+E + T G P
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERA-STTDGCP 371
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503
+P V+V V + + L + G + V+G + F GY KR L DGWF TGD+
Sbjct: 372 LPGVEV---RVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNG-TDADGWFDTGDLA 427
Query: 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
DG ++I R K++ + GE + V +E +
Sbjct: 428 RIDADGYIRISGRSKDVI-IRGGENIPVVEIEAL 460
|
Length = 547 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-13
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 40/158 (25%)
Query: 389 LILSGAAPLTP-----HVETFLRVVACAHVLQGYGLTETCAGTFVS-------LPNEMSM 436
+ GA+P++P +E F + A Q YG TE A ++ P++
Sbjct: 285 TVYYGASPMSPVRLAEAIERFGPIFA-----QYYGQTE--APMVITYLRKRDHDPDDPKR 337
Query: 437 IGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
+ + G P P + V L V + E GE+CV+G V GY+ R + T E
Sbjct: 338 LTSCGRPTPGLRVALLDEDGREVAQGEV--------GEICVRGPLVMDGYWNRPEETAEA 389
Query: 492 MVDGWFHTGDIGEWQPDGSLKIIDRKK--------NIF 521
DGW HTGD+ DG I+DRKK N+F
Sbjct: 390 FRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVF 427
|
Length = 524 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 31/160 (19%)
Query: 390 ILSGAAPLTPHVETFLRVVA---CAHVLQGYGLTETCAGTFVS-----LPNEMSMIGTVG 441
I++GA +E RV+ A V YG+TET + + L + +G
Sbjct: 323 IMAGA---PCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQ 379
Query: 442 PPVPN--VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498
P + VD +VP E GE+C +G +V GY+ + T E + DGW H
Sbjct: 380 PHLEVKVVDPDGATVPRGEI--------GELCTRGYSVMKGYWNNPEATAESIDEDGWMH 431
Query: 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY 538
TGD+ G ++I+ R K++ + ENIY
Sbjct: 432 TGDLATMDEQGYVRIVGRSKDMI---------IRGGENIY 462
|
Length = 558 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-13
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 27/138 (19%)
Query: 416 GYGLTET----CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVC 471
GYGLTE CA L VG P+P +V L GE+
Sbjct: 270 GYGLTEMASTVCAKRADGLAG-------VGSPLPGREVKLVD--------------GEIW 308
Query: 472 VKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAV 531
++G+++ GY+++ L V +GWF T D GEWQ +G L I+ R N+F S GE +
Sbjct: 309 LRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQP 366
Query: 532 ENLENIYALVSAIDSVWV 549
E +E + + V+V
Sbjct: 367 EEIERVINQHPLVQQVFV 384
|
Length = 458 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 9e-13
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 438 GTVGPPVPNV-----DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G+ G PV NV D V E GE+ + + GY+ + T E
Sbjct: 341 GSAGRPVLNVETRVVDDDGNDVAPGEV--------GEIVHRSPQLMLGYWDDPEKTAEAF 392
Query: 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVA---VENLENIY--------ALV 541
GWFH+GD+G +G + ++DRKK++ K + GE VA VE E +Y A++
Sbjct: 393 RGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGENVASREVE--EALYTHPAVAEVAVI 449
Query: 542 SAIDSVWV 549
D W+
Sbjct: 450 GLPDPKWI 457
|
Length = 523 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 96/454 (21%), Positives = 165/454 (36%), Gaps = 118/454 (25%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGK-CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y E+ + +V N + GV+ + G+ PE ++ + A +G VPL+ G
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAFG 60
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
A+E+ + HSG K +V+ R
Sbjct: 61 PKAIEYRLGHSGA------------------------KVVVT----NAANRG-------- 84
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ D +D+ MYTSGTTG PKGV V + F A ++ +
Sbjct: 85 --------------KLD------DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAI 124
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
+ L +DV + +A G A G + L I T+F
Sbjct: 125 D-----LRDDDV---FWNIA------------DPGWAYGLYYAITGPLAMGI----TTVF 160
Query: 319 CAVPRVLDRIYSGL-NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377
+ Y L ++ N A S ++ + A+ AD
Sbjct: 161 LEGGFTAENTYDVLERLGVT----------NFAGS------PTAYRMLMAAG-ADAAARI 203
Query: 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437
K+K +R+ S PL P V + + + YG TET G V + ++
Sbjct: 204 KLK------LRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHE 255
Query: 438 ---GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST----VFSGYYKREDLTKE 490
G++G P+P + +V + + L+ G++ + ++ FSGY+ + T E
Sbjct: 256 VRAGSMGLPLPGYRI---AVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAE 312
Query: 491 VMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524
++ W+ TGD+ E DG I R ++ +
Sbjct: 313 LIAGRWYVTGDLVERDEDGYFWFIGRADDVIISA 346
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 33/170 (19%)
Query: 412 HVLQGYGLTETCAGTFV--------SLPNEMSM-----IGTVGPPVPNVDV----CLESV 454
V+ YGLTE LP M G + +VDV ESV
Sbjct: 326 QVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESV 385
Query: 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKII 514
P GE+ +KGS++ GY K T E GW +TGD+G PDG ++I
Sbjct: 386 PR------DGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIK 439
Query: 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNP 564
DR K+I +S GE ++ +EN+ ++ Y E+ +VA+ +P
Sbjct: 440 DRSKDII-ISGGENISSVEVENV---------LYKYPKVLETAVVAMPHP 479
|
Length = 579 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 98/429 (22%), Positives = 157/429 (36%), Gaps = 100/429 (23%)
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTI 178
M A + +G +P L A + + I +G+ I + E +PE + +
Sbjct: 89 MLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLL 148
Query: 179 VSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLP------VKKKNDICTIMYTSG 232
V V E W +F + EN D +DI + +TSG
Sbjct: 149 V---LVGDPVPE----------GWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSG 195
Query: 233 TTGDPKGVMVSNEN------IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
TTG PK MV +++ IVT A ++ LT D ++ + I
Sbjct: 196 TTGMPK--MVEHDHTYPLGHIVT--AKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIA 251
Query: 287 E--VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
VF+ + + + D K LLE I + T FCA P + R + + +S
Sbjct: 252 GAAVFVYD-----YDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL--IKEDLSK------ 297
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
++L A + VF+ K+ G ++
Sbjct: 298 -----------YDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLM---------------- 330
Query: 405 LRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL 462
+G+G TET TF P G++G P P D+ + ++ D
Sbjct: 331 ----------EGFGQTETTLTIATF---PWMEPKPGSMGKPSPGYDIDI-----IDPDGK 372
Query: 463 SSTP--RGEVCVKGST-----VFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515
S GE+ ++ S +F GYY+ + T EV DG++HTGD DG L +
Sbjct: 373 SCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVG 432
Query: 516 RKKNIFKLS 524
R ++ K S
Sbjct: 433 RADDLIKSS 441
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 82/362 (22%), Positives = 127/362 (35%), Gaps = 69/362 (19%)
Query: 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261
W + L + + V +D+ +++TSGT+GDPK V ++ + AGV +
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGV-----ML 184
Query: 262 NEK--LTSEDV-YVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
++ L +DV YVS +PL F SN A + W +
Sbjct: 185 AQRFGLGPDDVCYVS-MPL-----------FHSN-AVMAGW--------------AVALA 217
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
L R +S +SG L + Y + + K +V A+P +
Sbjct: 218 AGASIALRRKFS------ASGFLPDVRRYGATY---ANYVGKPLSYVLATPERPDDADNP 268
Query: 379 VKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438
++ +G AP + F R C V+ G+G TE P+ G
Sbjct: 269 LRIVYGNE-------GAP--GDIARFARRFGC-VVVDGFGSTEGGVA-ITRTPDTPP--G 315
Query: 439 TVGPPVPNVDV----CLESVPEMEYDALSSTPR----GE-VCVKGSTVFSGYYKREDLTK 489
+GP P V + P E GE V G F GYY +
Sbjct: 316 ALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADA 375
Query: 490 EVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWV 549
E M G + +GD+ DG R + ++ GE + +E I V V
Sbjct: 376 ERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAV 434
Query: 550 YG 551
Y
Sbjct: 435 YA 436
|
Length = 529 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 5e-12
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 401 VETFLRVVA---CAHVLQGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCL---- 451
+E RV+ + V YG+TET + + ++ + TVG +P+++V +
Sbjct: 329 IEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPE 388
Query: 452 --ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPD 508
E+VP E +GE+C +G +V GY+ + T E + DGW HTGD+ +
Sbjct: 389 TGETVPRGE--------QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEE 440
Query: 509 GSLKIIDRKKN 519
G + I+ R K+
Sbjct: 441 GYVNIVGRIKD 451
|
Length = 559 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-12
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLES-VPEMEYDALSSTPRGEVCV 472
L YG+TET G P + ++G P C E+ + + L + GE+C+
Sbjct: 316 LTSYGMTETIVGIIGDRPGDKRRWPSIGRP----GFCYEAEIRDDHNRPLPAGEIGEICI 371
Query: 473 KG---STVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEY 528
KG T+F YY T +V+ DGW HTGD G +G +DR+ N+ K GE
Sbjct: 372 KGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRG-GEN 430
Query: 529 VAVENLENIYALVSAIDSVWVYG 551
V+ LENI A I + V G
Sbjct: 431 VSCVELENIIATHPKIQDIVVVG 453
|
Length = 517 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 83/336 (24%), Positives = 131/336 (38%), Gaps = 71/336 (21%)
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
F + K D+ I++TSGT PKGV +++ N+ +A + L+ + K +DV +S
Sbjct: 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANL---LANQRACLKFFSPK--EDDVMMS 229
Query: 274 YLPLAHIFD----------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPR 323
+LP H + + VF N K ++E I E K T + P
Sbjct: 230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPL-------YPKKIVEMIDEAKVTFLGSTPV 282
Query: 324 VLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
D I L L F + F + ++ + ++F
Sbjct: 283 FFDYI---LKTAKKQESCLPSLRFVVIGGDAFKD----------------SLYQEALKTF 323
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
PH++ LR QGYG TE ++ N VG P
Sbjct: 324 ---------------PHIQ--LR--------QGYGTTECSPVITINTVNSPKHESCVGMP 358
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTGD 501
+ +DV + V E +SS G V +G+++FSGY + V + G W+ TGD
Sbjct: 359 IRGMDVLI--VSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGD 416
Query: 502 IGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
+G G L + R K+ E V++E LE+I
Sbjct: 417 LGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451
|
Length = 539 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 68/260 (26%), Positives = 107/260 (41%), Gaps = 52/260 (20%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D F V R P+ L R +A +Y T++++ D V ++ + GV+ + G
Sbjct: 22 DAFDATVARFPDREALVVRH----QALRY---TWRQLADAVDRLARGLLALGVQPGDRVG 74
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVS-------------IA 154
I+ NC EW++ A +G V + A +E+ + SGV A
Sbjct: 75 IWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHA 134
Query: 155 FVEEKKIPEMLKTFPKTTE-----HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG 209
++E +P + + P L+ +VS + P G W E G
Sbjct: 135 MLQEL-LPGLAEGQPGALACERLPELRGVVSLAPAPPP--------GFLA--WHELQARG 183
Query: 210 EN-KQFDLPVKK----KNDICTIMYTSGTTGDPKGVMVSNENIVT---FIAGVKCLLESV 261
E + L ++ ++D I YTSGTTG PKG +S+ NI+ F+A ES+
Sbjct: 184 ETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVA------ESL 237
Query: 262 NEKLTSEDVYVSYLPLAHIF 281
LT D +PL H F
Sbjct: 238 G--LTEHDRLCVPVPLYHCF 255
|
Length = 558 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 9e-11
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 6/165 (3%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV-GPPVPN 446
L AP+ + + A ++ +G+TE A T + + T G P+P
Sbjct: 313 FTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPG 372
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQ 506
V+V V + LS G + V+G + F GY KR L +GWF TGD+
Sbjct: 373 VEV---KVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS-TDAEGWFDTGDLAFQD 428
Query: 507 PDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
+G ++I R K++ + GE + V +EN+ A+ V +
Sbjct: 429 AEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVA 472
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
D I+YTSGTTG PKGV++++ A L + L +DV ++ LPL HI
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQ--LLFAAR---LAARLLGLRPDDVLLTPLPLFHI 134
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 81/339 (23%), Positives = 126/339 (37%), Gaps = 99/339 (29%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED------VYVSYLPLAHI 280
++TSG+TG PK V+ + + IA E+L + V + ++P H
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQ--------EQLRPREPDPPPPVSLDWMPWNHT 276
Query: 281 FDRAIEEVFISNGAAIG---FWRGDVKLL-------LEDIGELKPTIFCAVPRVLDRIYS 330
NG G + D K L + ++ E+ PT++ VP
Sbjct: 277 MGGNA----NFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVP-------- 324
Query: 331 GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV-KQSFGGRVRL 389
Y+ +A+ + D ++SF +RL
Sbjct: 325 ------------------AGYAM----------------LAEAMEKDDALRRSFFKNLRL 350
Query: 390 ILSGAAPLTPHVETFLRVVACAH------VLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
+ G A L+ + ++ +A GYG TET A T + +G +G P
Sbjct: 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLP 409
Query: 444 VPNVDVCLESVPEMEYDALSSTPRG---EVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499
+P V++ L P G EV VKG V GY+K +LT +G++
Sbjct: 410 LPGVELKL-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRL 456
Query: 500 GDIGEW-QPDGSLK--IID-RKKNIFKLSQGEYVAVENL 534
GD + PD K I D R FKLS G +V+V L
Sbjct: 457 GDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTL 495
|
Length = 624 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAH-----VLQGYGLTETCAGTFVSLPNEMS-MIGTVG 441
R L G + +V +L YG TE+ V+L + +S + T G
Sbjct: 305 RFFLCGGTTIPK------KVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDG 358
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
V++ V + L GE +G VF GY +LT + +GW+++G
Sbjct: 359 YAAAGVEI---KVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415
Query: 501 DIGEWQPDGSLKIIDRKKNI 520
D+ G +KI RKK+I
Sbjct: 416 DLCRMDEAGYIKITGRKKDI 435
|
Length = 547 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 415 QGYGLTETCAGTFVSLPNEM--------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTP 466
Q +GL E G LP + + IGT G ++V + + E L
Sbjct: 310 QYFGLGE-VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEV---QIQDDEGRELPPGE 365
Query: 467 RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521
GE+CV G VF+GYY + + DGWF TGD+G G L I R +++
Sbjct: 366 TGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMY 420
|
Length = 528 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 92/383 (24%), Positives = 137/383 (35%), Gaps = 85/383 (22%)
Query: 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277
+ K +D I++TSG+TG PKGV+ ++ I ++ L + D ++ P
Sbjct: 81 IPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYG-----IREGDRDLAAFPP 135
Query: 278 AHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
F G A+G + I + PT P LD
Sbjct: 136 -----------FALFGPALG--------VTTVIPAMDPT----APAALD----------- 161
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR----VRLILSG 393
L + + I S F SP K V ++ G +R +LS
Sbjct: 162 -PAKLAQAIREIGASCVF-----------GSPALLKNVARYCEE--NGIQLPSLRRVLSA 207
Query: 394 AAPLTPHV-ETFLRVVA-CAHVLQGYGLTETCAGTFVSL------PNEMSMIGT---VGP 442
AP+ P + F+ + A + YG TE + E G VG
Sbjct: 208 GAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAGVCVGH 267
Query: 443 PVPNVDVC---LESVPEMEYDALSSTPR---GEVCVKGSTVFSGYYKREDLTKEVMVD-- 494
PVP +DV ++ P +D P GE+ V G V YY R + TK +
Sbjct: 268 PVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDG 327
Query: 495 --GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEY--VAVENLENIYALV--SAIDSVW 548
W GD+G + G L RK + + + G V VE + N + V SA+ V
Sbjct: 328 NRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV- 386
Query: 549 VYGNSFESFLVAIVNPNKDALER 571
G V +V P L+R
Sbjct: 387 --GKPGTQAPVLVVEPMPPVLDR 407
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-10
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 27/159 (16%)
Query: 387 VRLILSGAAPL---TPHV--ETF-LRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGT 439
+R + +GA + T E F +R+ L+GYG+TET ++ P M + GT
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTETAPVIALNTP--MHNKAGT 960
Query: 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL-TKEVMVDGWFH 498
VG +P ++ LE VP ++ G + V+G V GY + E+ E DGW+
Sbjct: 961 VGRLLPGIEYRLEPVPGIDEG-------GRLFVRGPNVMLGYLRAENPGVLEPPADGWYD 1013
Query: 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYV---AVENL 534
TGDI +G + I R K K++ GE + AVE L
Sbjct: 1014 TGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEEL 1051
|
Length = 1140 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 3e-10
Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 62/223 (27%)
Query: 387 VRLILSGAAPLTPHV-ETFLRVVACAH-----VLQGYGLTETCAGTFVSLP--------- 431
VRLI +GA P++ + E FL +A + YGL E VS P
Sbjct: 230 VRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLA--VSFPKPGEPFKTV 287
Query: 432 ---------------------NEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSST 465
+ +S + VG P+ ++ + E +P+
Sbjct: 288 CLDRNHLKVGVKIIEIDPKNSDAISFV-EVGSPIDGCEIRIVDDAGEVLPDRTI------ 340
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRKKN-IFKL 523
G + +KG V SGYY + TK+ + DGW TGD+G + +G L I R K+ I
Sbjct: 341 --GHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLG-FLRNGRLVITGRAKDIIIVN 397
Query: 524 SQGEYVAVENLENIYALVSAIDS-----VWVYGNSFESFLVAI 561
Q Y ++E + V I VY +S V I
Sbjct: 398 GQNYY--PHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVI 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+DI + YTSG+TG PKGVMV++ N+ +A ++ + + L +DV VS+LPL H
Sbjct: 148 DDIAFLQYTSGSTGAPKGVMVTHGNL---LANLRAIARAF--GLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 6e-10
Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 26/217 (11%)
Query: 80 TYKEVYDLVIKVVNAI-RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y+E+ + ++ + + CGV + + +Y N P+++I A VP+
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIV-SFSKVKPEQ-------- 188
+ + SG +A V + P++ H+ IV +S P +
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHV--IVAQYSDYLPAEPEIAVPAW 154
Query: 189 -REEIEKYGLA---VYSWDEFLQLGENKQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVS 243
R E LA V +W E L G P +D+ + YTSGTTG PKG M +
Sbjct: 155 LRAEPPLQALAPGGVVAWKEALAAGLAP---PPHTAGPDDLAVLPYTSGTTGVPKGCMHT 211
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+ ++ G + T E V ++ LPL H+
Sbjct: 212 HRTVMANAVGS-----VLWSNSTPESVVLAVLPLFHV 243
|
Length = 546 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 115/485 (23%), Positives = 172/485 (35%), Gaps = 99/485 (20%)
Query: 81 YKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAG 140
Y+E+ V + +R V + + N PE + + AC LG V L
Sbjct: 44 YRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIA 103
Query: 141 AVE-FIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194
A+E F + K+ PE L + P + + S+ +
Sbjct: 104 AIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGN 163
Query: 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254
D +++TSGTTG+PK V+++N TF A
Sbjct: 164 ADQGS----------------------EDPLAMIFTSGTTGEPKAVLLANR---TFFAVP 198
Query: 255 KCLL-ESVN--EKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGFWRGDVKL-LLED 309
L E +N + E Y S LP HI I + G + G+ LLE
Sbjct: 199 DILQKEGLNWVTWVVGETTY-SPLPATHIGGLWWILTCLMHGGLCVT--GGENTTSLLEI 255
Query: 310 IGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASP 369
+ C VP +L ++ S L S +L + Y G + + A
Sbjct: 256 LTTNAVATTCLVPTLLSKLVSELK----SANATVPSLRLVGYG--------GSRAIAAD- 302
Query: 370 IADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET-CAGTFV 428
VR I + V A V YGL+ET C T +
Sbjct: 303 -----------------VRFIEATG-------------VRTAQV---YGLSETGC--TAL 327
Query: 429 SLPNEMSMI-----GTVGPPVPNVDVCLESV----PEMEYDALSSTPRGEVCVKGSTVFS 479
LP + I G VG P P VDV L + P A S G + +K
Sbjct: 328 CLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAP-GAGPSASFGTLWIKSPANML 386
Query: 480 GYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYA 539
GY+ + T EV++DGW +TGD+ E + DG I R + + G +A + ++ I
Sbjct: 387 GYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMI-ICGGVNIAPDEVDRIAE 445
Query: 540 LVSAI 544
VS +
Sbjct: 446 GVSGV 450
|
Length = 540 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)
Query: 79 KTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ E+++ V+ V + GV++ + + N E I+ + A LG V L L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ + + + V ++ E K E+
Sbjct: 88 REELLWQLDDAEVKCLITDD------------DFEAKLIPGISVKFAELMNGPKEEA--- 132
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
E + +FDL +++ TIMYTSGTTG PKGV+ + N + + V L
Sbjct: 133 -----EIQE-----EFDL-----DEVATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175
Query: 259 ESVNEKLTSEDVYVSYLPLAHI 280
N LT +D +++ +P+ HI
Sbjct: 176 ---NLGLTEDDCWLAAVPIFHI 194
|
Length = 483 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-09
Identities = 58/237 (24%), Positives = 90/237 (37%), Gaps = 63/237 (26%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV---PLYDT 136
TY+E + V + + G+E+ + GI+ N PEW++ A +G V P Y
Sbjct: 45 TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104
Query: 137 LGAGAVEFIICHSGVS-IAFVEEKK-----------IPEM---------LKTFPKTTEHL 175
+E+ + SG + + K PE+ P L
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLP----EL 157
Query: 176 KTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--------KQFDLPVKKKNDICTI 227
+ ++ K + ++DE L LG +Q L +D I
Sbjct: 158 RRVIFLGDEKHP----------GMLNFDELLALGRAVDDAELAARQATL---DPDDPINI 204
Query: 228 MYTSGTTGDPKGVMVSNENIVT---FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
YTSGTTG PKG +++ NI+ FI + + KLT ED +PL H F
Sbjct: 205 QYTSGTTGFPKGATLTHRNILNNGYFIG--EAM------KLTEEDRLCIPVPLYHCF 253
|
Length = 559 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 27/136 (19%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVD------VCLESVPEMEYDALSSTPR 467
++GYGLTET A T + P + + +G P VD LE +P E
Sbjct: 334 VEGYGLTETMAQTHSN-PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGE--------V 384
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV--DG--WFHTGDIGEWQPDGSLKIIDRKKNI--- 520
GE+ V G VF GY+ R + T E + DG +F TGD+G +G I DR K +
Sbjct: 385 GEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINA 444
Query: 521 --FKLSQGEYVAVENL 534
FK+ E VENL
Sbjct: 445 SGFKVWPAE---VENL 457
|
Length = 546 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 7/62 (11%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLPL 277
+DI I ++SG+TG+PKGV+++++N++T I ++ ++TSEDV++S++PL
Sbjct: 103 SLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA------EITSEDVFLSWMPL 156
Query: 278 AH 279
H
Sbjct: 157 TH 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 3e-09
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSYLPLAH 279
+D+ ++YTSG+TG PKGV VS+ +V F L S+ + + D ++ ++
Sbjct: 93 DDLAYVIYTSGSTGKPKGVEVSHRALVNF-------LLSMARRPGLGASDRLLAVTTIS- 144
Query: 280 IFDRAIEEVFI--SNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVP 322
FD ++ E+ + +GA + D + L I + + TI A P
Sbjct: 145 -FDISVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATP 192
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 23/153 (15%)
Query: 385 GRVRL-ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
GR L L G L + L + A + YG TET + + T+G P
Sbjct: 205 GRESLTALCGGEALPRDLAERL-LSTGAELWNMYGPTETTIWSTCARVTAADGPVTIGRP 263
Query: 444 VPN-----VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--- 495
+ N +D L+ VP GE+ + G V GY R +LT E V
Sbjct: 264 IANTQVYVLDEDLQPVPPGVP--------GELYIGGDGVARGYLGRPELTAERFVPDPFD 315
Query: 496 -----WFHTGDIGEWQPDGSLKIIDRKKNIFKL 523
+ TGD+ W+PDG L+ + R + K+
Sbjct: 316 DPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI 348
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 95/435 (21%), Positives = 160/435 (36%), Gaps = 85/435 (19%)
Query: 196 GLAVYSWDEFLQLGEN----KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN---ENIV 248
G+ V + + + LGE + P ++ + YTSGTTG PKG ++ E+ V
Sbjct: 122 GVRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV 181
Query: 249 TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW----RGDVK 304
F++ + +V + +PL H+ V ++ A G + D
Sbjct: 182 LFMS------TQAGLRHGRHNVVLGLMPLYHVI--GFFAVLVAALALDGTYVVVEEFDPA 233
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
L+ I + + T A P LD L L +L ++ +
Sbjct: 234 DALKLIEQERVTSLFATPTHLD----ALAAAAEGAPLKLDSLEHVTF------------- 276
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
A V ++V Q G I YG TE
Sbjct: 277 --AGATMPDAVLERVNQHLPGEKVNI--------------------------YGTTEAMN 308
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS-TVFSGYYK 483
++ P GT P +V + + +AL + GE+ V + F+GY
Sbjct: 309 SLYMRDPRT----GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLN 364
Query: 484 REDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSA 543
+ T E + DGW+ T D+ P G+++I+ R ++ +S GE + +E +
Sbjct: 365 QPQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPG 423
Query: 544 IDSVWVYGNSFESF---LVAIV------NPNKDALERWAAENGVNGDFKSLCENPKAKEF 594
+ V V G E + + A V + DAL+ + + + DFK P+ F
Sbjct: 424 VTEVVVIGLPDERWGQSVTACVVPREGETLSADALDTFCRASEL-ADFK----RPRRY-F 477
Query: 595 ILGELSRVAKEKKLK 609
L EL + A K L+
Sbjct: 478 FLDELPKNAMNKVLR 492
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 21/169 (12%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTVGPPV 444
R+R +++GA L + + +L+GYG+TE CA VS+ M+ GTVG +
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE-CA-PVVSINVPMAAKPGTVGRIL 537
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE----------DLTKEVMVD 494
P +D L SVP +E G + +KG + +GY + E + + M
Sbjct: 538 PGMDARLLSVPGIEQG-------GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMER 590
Query: 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSA 543
GW+ TGDI + G ++I R K K++ GE V++E +E + VS
Sbjct: 591 GWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSP 638
|
Length = 718 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 5e-09
Identities = 81/428 (18%), Positives = 133/428 (31%), Gaps = 88/428 (20%)
Query: 153 IAFVEEKKIPEML---KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG 209
IA++ ++L E ++ + + E+ + +
Sbjct: 88 IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEG-------YLAYEEA 140
Query: 210 ENKQFDLPVKKKN--DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267
+ + C + YT+GTTG PKGV+ S+ +V + + +
Sbjct: 141 -LGEEA-DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKD- 197
Query: 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVL 325
V + +P+ H+ + GA D L+E T VP V
Sbjct: 198 --VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 255
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ L +
Sbjct: 256 LALADYL--------------------------------------------ESTGHRLKT 271
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GT-------FVSLPNEMSM- 436
RL++ G+A P V QGYGLTET SL E +
Sbjct: 272 LRRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 329
Query: 437 ------IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK- 489
+ + D VP D EV +KG + GYY E+ T+
Sbjct: 330 LKAKTGLPIPLVRLRVADEEGRPVP---KDG--KALG-EVQLKGPWITGGYYGNEEATRS 383
Query: 490 EVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWV 549
+ DG+F TGDI W +G ++I DR K++ K GE+++ +LEN + V
Sbjct: 384 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAV 442
Query: 550 YGNSFESF 557
+
Sbjct: 443 VAIPHPKW 450
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 8e-09
Identities = 67/319 (21%), Positives = 109/319 (34%), Gaps = 96/319 (30%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKGV VS+ ++V + E LT +D + ++ + FD + E
Sbjct: 4699 VIYTSGSTGRPKGVAVSHGSLVNHLHATGERYE-----LTPDDRVLQFMSFS--FDGSHE 4751
Query: 287 EVF--ISNGAAI-----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
++ + NGA++ W D + L +I E + T+ P
Sbjct: 4752 GLYHPLINGASVVIRDDSLW--DPERLYAEIHEHRVTVLVFPP----------------- 4792
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
Y + H + P +R+ G +
Sbjct: 4793 ----------VYLQQLAE----HAERDGEP---------------PSLRVYCFGGEAVAQ 4823
Query: 400 -HVETFLRVVACAHVLQGYGLTET--------CAGTFVSLPNEMSMIGTVGPPVPNV--- 447
+ R + ++ GYG TET M +G P+ N
Sbjct: 4824 ASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMP----IGTPLGNRSGY 4879
Query: 448 --DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF-------- 497
D L +P GE+ + G V GY +R LT E V F
Sbjct: 4880 VLDGQLNPLP--------VGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLY 4931
Query: 498 HTGDIGEWQPDGSLKIIDR 516
TGD+ ++ DG + + R
Sbjct: 4932 RTGDLARYRADGVIDYLGR 4950
|
Length = 5163 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 79/343 (23%), Positives = 127/343 (37%), Gaps = 99/343 (28%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE-DVYVSYLPLAHI 280
+D+ + TSG+TG PK V +++ N+ A + + + + E DV VS+LPL H
Sbjct: 152 DDLALMQLTSGSTGSPKAVQITHGNLY---ANAEAMFVAA--EFDVETDVMVSWLPLFH- 205
Query: 281 FD------------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRI 328
D E V ++ + F R D L E I + + T+ A P
Sbjct: 206 -DMGMVGFLTVPMYFGAELVKVT---PMDFLR-DPLLWAELISKYRGTMTAA-P------ 253
Query: 329 YSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388
N AY+ L++ K FD +R
Sbjct: 254 -------------------NFAYALLARRLRRQAKPGA---------FDL------SSLR 279
Query: 389 LILSGAAPLTPH-VETFLRVVA-----CAHVLQGYGLTE-TCAGTFVSLPNEMSM----- 436
L+GA P+ P VE L A +L YG+ E T A +F + +
Sbjct: 280 FALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDA 339
Query: 437 -------------------IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTV 477
+ T+GPP+P ++V V + + L G + ++G +V
Sbjct: 340 DLLAALRRAVPATKGNTRRLATLGPPLPGLEV---RVVDEDGQVLPPRGVGVIELRGESV 396
Query: 478 FSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNI 520
GY + DGW TGD+G +G + + R K++
Sbjct: 397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDV 439
|
Length = 545 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 77/307 (25%), Positives = 112/307 (36%), Gaps = 65/307 (21%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
D + +D+ I +TSGTTG PKG M + +I +A V + T +DV++
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDI---LAICDAFPRHVLQP-TPDDVFIGS 195
Query: 275 LPLAHIFDRAIEEVF-ISNGA-AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
PLA F +F + GA A+ + LLL+ I E + TI
Sbjct: 196 PPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATI--------------- 240
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
LF +P A + + KVK +R +S
Sbjct: 241 -------------LF-------------------TAPTAYRAMLIKVKAFDISSLRKCVS 268
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452
L V ++ G G TE F+S E + G G PVP + +
Sbjct: 269 AGETLPAKVWQDWYERTGLKIIDGIGATEMLH-IFISANEENAKPGATGKPVPGYEARIV 327
Query: 453 SVPEMEYDALSSTPRGEV---CVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDG 509
D + PRGE V+G T Y ++ +E + DGW TGDI DG
Sbjct: 328 D------DQGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEYVRDGWNVTGDIFRQDEDG 379
Query: 510 SLKIIDR 516
+ R
Sbjct: 380 YFHYVAR 386
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 15/146 (10%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
R+R +S PL P V ++ + GYG TET A + P + G++G P+P
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTA-MIGNSPGQKVKPGSMGRPLP 258
Query: 446 NVDVCLESVPEMEYDALSSTPR---GEVCVKGST----VFSGYYKREDLTKEVMVDGWFH 498
V L D GE+ + + GY + T G++
Sbjct: 259 GYRVVL-------LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYR 311
Query: 499 TGDIGEWQPDGSLKIIDRKKNIFKLS 524
TGD DG L + R ++FK S
Sbjct: 312 TGDKAYRDEDGYLWFVGRADDVFKSS 337
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 47/184 (25%)
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN 446
++ I G + + P + V+ +G+TET S +GTV P
Sbjct: 300 LQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTET------------SPVGTVARPPSG 347
Query: 447 VD--------VCLESVP-EMEY------DALSSTPR--GEVCVKGSTVFSGYYKR----- 484
V V P +EY + ST R GE+ V+G+ V + YY
Sbjct: 348 VSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEG 407
Query: 485 ------------EDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVE 532
ED DGW TGD+G DG L I DR +++ + S GE++
Sbjct: 408 GGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIR-SGGEWIYSA 466
Query: 533 NLEN 536
LEN
Sbjct: 467 QLEN 470
|
Length = 576 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 441 GPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
G +P ++ + +PE G +CV+G ++ SGY++ E+ + DG
Sbjct: 388 GKALPGHEIEIRNEAGMPLPERVV--------GHICVRGPSLMSGYFRDEESQDVLAADG 439
Query: 496 WFHTGDIGEWQPDGSLKIIDRKKNI 520
W TGD+G + DG L I R K++
Sbjct: 440 WLDTGDLG-YLLDGYLYITGRAKDL 463
|
Length = 579 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 13/213 (6%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
I + G +Y E+ + + + N + G+ + K ++ NCPE+I +G
Sbjct: 27 IFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
VP+ L +I+ +S S+ + P + + L+ I +
Sbjct: 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRV 142
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
+ V S+ + P +D I++TSGTT PKGV++++ N+
Sbjct: 143 ALPADD----GVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL 198
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
AG + L +DVY++ +P HI
Sbjct: 199 R--FAG---YYSAWQCALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 39/151 (25%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 382 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTV 440
+ R+R + SG L + + R V + YG TE + G++
Sbjct: 204 RYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTE-ANLVVGNCAALGPARPGSM 262
Query: 441 GPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVK--GSTVFSGYYKREDLTKEVMV 493
G PVP +V + VP E GE+ VK +F GY+ + T
Sbjct: 263 GKPVPGHEVAVVDDAGRPVPPGE--------VGEIAVKRPDPVMFLGYWNNPEATAAKFA 314
Query: 494 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524
W TGD+G DG L R ++ K S
Sbjct: 315 GDWLLTGDLGRRDADGYLWFKGRADDVIKSS 345
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 15/160 (9%)
Query: 402 ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDV----CLESVPEM 457
F R C V GYG +E A V P G++G P V + L
Sbjct: 281 AEFSRRFGC-QVEDGYGSSEG-AVIVVREPGTPP--GSIGRGAPGVAIYNPETLTECAVA 336
Query: 458 EYDAL-----SSTPRGE-VCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSL 511
+DA + GE V G+ F GYY + T E M G + +GD+ DG +
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI 396
Query: 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
R + ++ GE ++ +E I AI+ V VY
Sbjct: 397 YFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA 435
|
Length = 540 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 30/172 (17%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+++ + ++ I+ + ++ +YG P ++ G +P+ DT
Sbjct: 27 TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV-DT--- 82
Query: 140 GAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
I + E PE++ T E V + E+ E G
Sbjct: 83 --------SIPSERIEMIIEAAGPELVIH---TAELSIDAVGTQIITLSALEQAETSGGP 131
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
V FD VK +D I+YTSG+TG+PKGV +S++N+V+F
Sbjct: 132 V-------------SFDHAVKG-DDNYYIIYTSGSTGNPKGVQISHDNLVSF 169
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 24/140 (17%)
Query: 413 VLQGYGLTETCA-GTFVSLPNEMS---------MIGTVGPPVPNVDVCLESVPEMEYDAL 462
V +G+TE GT +L S ++ G P V++ + DA
Sbjct: 321 VRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD------DAG 374
Query: 463 SSTPR-----GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRK 517
P G + V+G V + YY+ + + + DG+F TGD+ G ++I DR
Sbjct: 375 KELPWDGKTFGRLKVRGPAVAAAYYRVDG--EILDDDGFFDTGDVATIDAYGYMRITDRS 432
Query: 518 KNIFKLSQGEYVAVENLENI 537
K++ K S GE+++ +LEN+
Sbjct: 433 KDVIK-SGGEWISSIDLENL 451
|
Length = 542 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 26/206 (12%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
T++E+ D V + A+ GV + I +N E++ + A N LG VP+ L
Sbjct: 44 TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ F++ G + E P + T + L + V + + +V
Sbjct: 104 PEIAFLVSDCGAHVVVTEAALAP--VATAVRDIVPLLSTVVVAGGSSDD---------SV 152
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDI-CTIMYTSGTTGDPKGVMVSNENIV----TFIAGV 254
+++ L E PV ND IMYTSGTTG PKG ++++ N+ T +
Sbjct: 153 LGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRT- 209
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHI 280
N + DV +PL HI
Sbjct: 210 -------NGADINSDVGFVGVPLFHI 228
|
Length = 542 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 40/163 (24%)
Query: 387 VRLILSGAAPLTPHV-ETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT----- 439
+R ++S AP+ V E F ++ A +L YG TE +LP +S I +
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATE-------ALP--ISSIESREILF 340
Query: 440 -------------VGPPVPNVDVCLESVPEMEYDALSSTPR------GEVCVKGSTVFSG 480
VG PV V+V + ++ + R GE+ V G V
Sbjct: 341 ATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRS 400
Query: 481 YYKREDLTKEVMV-DG----WFHTGDIGEWQPDGSLKIIDRKK 518
YY R + T+ + DG W GD+G G L RK
Sbjct: 401 YYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKA 443
|
Length = 552 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 31/188 (16%)
Query: 66 REIVDGKAGKYVWK------TYKEVYDLVIKVVNAIRTCGVEERGK---CGIYGVNCPEW 116
R +V+G+ GK + +Y E+ V ++ A+R GV+ + + GV+ P
Sbjct: 12 RNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIA 71
Query: 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---EMLKTFPKTTE 173
+G A A G+ V L L A +++ S + FV + +P L P
Sbjct: 72 FLG--AIRA-GIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP---- 124
Query: 174 HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGT 233
HL+ V + + + + LA E L E++QF + +D +Y+SG+
Sbjct: 125 HLEHRVVVGRPEAGEVQ------LA-----ELLA-TESEQFKPAATQADDPAFWLYSSGS 172
Query: 234 TGDPKGVM 241
TG PKGV+
Sbjct: 173 TGMPKGVV 180
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK--L 265
E+ P +D+ +++TSG+TG+PKGVM+++ V I VN + +
Sbjct: 112 AAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTI-------LDVNRRFGV 164
Query: 266 TSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFC 319
D ++ L FD ++ ++F +S GAA+ R D E + T++
Sbjct: 165 GPADRVLALSALH--FDLSVYDIFGALSAGAALVLPDEARRRDPDHWAELVQRHGVTVWN 222
Query: 320 AVPRVLD 326
+VP ++D
Sbjct: 223 SVPALMD 229
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 27/178 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPLYDTLG 138
TY ++ D + + + A G+ + +N PE + A GL L+
Sbjct: 39 TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQ-LAGLRRTALHPL-- 95
Query: 139 AGAVE---FIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR---EEI 192
G+++ +++ +G+S V+ E LK +++ V P+
Sbjct: 96 -GSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPV-PDGVDLLAAA 153
Query: 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
K+G A LP DI + YT GTTG PKGVM ++ +I T
Sbjct: 154 AKFGPA-----------PLVAAALP----PDIAGLAYTGGTTGKPKGVMGTHRSIATM 196
|
Length = 524 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 33/197 (16%)
Query: 61 RMLGQREIVDGK-AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
R+ G RE+V G V TY +++D +KV A+ G++ + N
Sbjct: 21 RIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNT------ 74
Query: 120 MEACNALGLHCVPLYDTLGAGAV-------------EFIICHSGVSIAFVEEKKIPEMLK 166
H Y +G GA+ +II H+ + + +P + K
Sbjct: 75 -------WRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEK 127
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT 226
K ++ V + + K +A W + F +N
Sbjct: 128 IADKL-PSVERYVVLTD-AAHMPQTTLKNAVAYEEWIA----EADGDFAWKTFDENTAAG 181
Query: 227 IMYTSGTTGDPKGVMVS 243
+ YTSGTTGDPKGV+ S
Sbjct: 182 MCYTSGTTGDPKGVLYS 198
|
Length = 542 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
+R I S PL P V + V + + TET A + P G++G P+
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 445 PNVDVCLESVPEMEYDALSSTPR----GEVCVKGS--TVFSGYYKREDLTKEVMVDGWFH 498
P ++ +V E + D L+ GE+ +K ++F GY E+ VDGW+
Sbjct: 267 PGIEA---AVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDGWYL 323
Query: 499 TGDIGEWQPDGSLKIIDRKKNIFKLS 524
TGD+ DG + R ++ K +
Sbjct: 324 TGDLAYRDEDGYFWFVGRADDVIKTA 349
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 80 TYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ + + +A+ G+ + G NC E + + A +G PL L
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 139 AGAVEFIICHSGVSIAFVEE---KKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK- 194
+ II H+ + + +++ E+LK P V F
Sbjct: 100 NDQIVHIINHAEDEVIVADPRLAEQLGEILKECP-CVRA----VVFIGPSDADSAAAHMP 154
Query: 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
G+ VYS++ L G + +D P + I Y++GTTG PKGV+ S
Sbjct: 155 EGIKVYSYEALLD-GRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYS 202
|
Length = 576 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 22/216 (10%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
+VD Y TY + ++ N + G+E + E+ I AC +G
Sbjct: 42 VVDNHGASY---TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG 98
Query: 128 LHCVPLYDTLGAGAVEFII--CHSGVSIAFVEEKKIPEMLKTFP--KTTEHLKTIVSFSK 183
VPL + + +++ C + + A K+ + P L+ IV K
Sbjct: 99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDK 158
Query: 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
+ P S + + E + +++ +++TSGT G PKGVM++
Sbjct: 159 LAPATSSL---------SLSQIIADYEPLTTAITTHG-DELAAVLFTSGTEGLPKGVMLT 208
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ NI +A + +N LT +DV++ PL H
Sbjct: 209 HNNI---LASERAYCARLN--LTWQDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 13/171 (7%)
Query: 384 GGRVRLILSGAAPLTPHVETFLRV-VACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442
RVR+ L P H R V +L GYG TET V+ ++ G++G
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERFGVD---LLDGYGSTETNFVIAVTHGSQRP--GSMGR 347
Query: 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVF---SGYYKREDLTKEVMVDGWFHT 499
P + V + L GE+ ++ F +GY+ + T E + WFHT
Sbjct: 348 LAPGFEA---RVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHT 404
Query: 500 GDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVY 550
GD DG + +DR K+ + +GE ++ +E + A+ + V+
Sbjct: 405 GDRVVRDADGWFRFVDRIKDAIR-RRGENISSFEVEQVLLSHPAVAAAAVF 454
|
Length = 542 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 222 NDICTIMYTSGTTGDPKGVM-VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+D+ ++YTSGTTG+PKGVM +N T +A + E + L ++DV + P+AH
Sbjct: 197 DDVTQLIYTSGTTGEPKGVMHTAN----TLMANIVPYAERL--GLGADDVILMASPMAH 249
|
Length = 547 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 34/197 (17%)
Query: 368 SPIADKIVFDKVKQSFGGRVRLI-LSGAAPLTPH-VETFLRVVACAHVLQGYGLTE-TCA 424
S + + D + S VR + L+G PL V+ + V YG +E T
Sbjct: 200 SAARELLRHDALPSS----VRTVNLAGE-PLPQELVQRLYALPQVERVYNLYGPSEDTTY 254
Query: 425 GTFVSLPNEMSMIGTVGPPVPN-----VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
T+ + S ++G P+ +D L+ VP GE+ + G+ V
Sbjct: 255 STYAEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGV--------PGELYIGGAGVAR 306
Query: 480 GYYKREDLTKEVMV-DGW--------FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVA 530
GY R +LT E + + + + TGD+ + DG L+ + R + K+ +G
Sbjct: 307 GYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKV-RG--FR 363
Query: 531 VENLENIYALVSAIDSV 547
+E L I A + +I V
Sbjct: 364 IE-LGEIEAALRSIPGV 379
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
L + +D ++ TSG+TG PK V++++ NI+ AG VN T +DV +++
Sbjct: 160 PLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGT----VQVNG-FTPDDVSLNW 214
Query: 275 LPLAHI 280
+PL H+
Sbjct: 215 MPLDHV 220
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF-VEEKKIPEMLK 166
++G PE + G +P+ + A +E II + S+ EE
Sbjct: 57 VFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEE-------- 108
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT 226
P + I ++ ++I G FD VK +D
Sbjct: 109 -LPLEILGIPVI------TLDELKDI-------------FATGNPYDFDHAVKG-DDNYY 147
Query: 227 IMYTSGTTGDPKGVMVSNENIVTF 250
I++TSGTTG PKGV +S++N+V+F
Sbjct: 148 IIFTSGTTGKPKGVQISHDNLVSF 171
|
Length = 503 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 47/118 (39%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL---------TS 267
P + +DI + YTSG+T PKGV VS+ N+V NE+L
Sbjct: 161 PALQPDDIAFLQYTSGSTALPKGVQVSHGNLVA------------NEQLIRHGFGIDLNP 208
Query: 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL 325
+DV VS+LPL H D+ L IG L IF VP VL
Sbjct: 209 DDVIVSWLPLYH----------------------DMGL----IGGLLQPIFSGVPCVL 240
|
Length = 4334 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 100/331 (30%)
Query: 230 TSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL---TSEDVYVSYLPLAHIFDRAIE 286
T+G+TG P+ ++S +++ + G+ N ++ + DV S+LPL H D +
Sbjct: 160 TAGSTGTPRTAILSPGAVLSNLRGL-------NARVGLDAATDVGCSWLPLYH--DMGL- 209
Query: 287 EVFISNGAAIG--FWRGDVKLLLEDIGELKPT-IFCAVPRVLDRIYSGLNQKISSGGLLK 343
F+ A G W L PT F A P + L+ S L
Sbjct: 210 -AFLLTAALAGAPLW-------------LAPTTAFSASP------FRWLSWLSDSRATLT 249
Query: 344 KTLFNIAYSY--KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
N AY+ K+ A ++D D G +R+ L+G P+
Sbjct: 250 AAP-NFAYNLIGKY-----------ARRVSD---VDL------GALRVALNGGEPV--DC 286
Query: 402 ETFLRVVAC--------AHVLQGYGLTE-TCAGTFVSLP------NEMSMIGT------- 439
+ F R YGL E TCA T V +P +E++
Sbjct: 287 DGFERFATAMAPFGFDAGAAAPSYGLAESTCAVT-VPVPGIGLRVDEVTTDDGSGARRHA 345
Query: 440 -VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH 498
+G P+P ++V + P ++ GE+ ++G+++ SGY + + D WF
Sbjct: 346 VLGNPIPGMEVRIS--PGDGAAGVAGREIGEIEIRGASMMSGYLGQAPIDP----DDWFP 399
Query: 499 TGDIGEWQPDGSLKIIDRKK--------NIF 521
TGD+G + DG L + R K NIF
Sbjct: 400 TGDLG-YLVDGGLVVCGRAKELITVAGRNIF 429
|
Length = 525 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 8e-06
Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 18/236 (7%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D F AV P+ L G ++ +Y+E+ V ++ + GV
Sbjct: 26 DHFDAAVANCPDKPALTAYRDGHGAVRRF---SYRELDCRVDRIAVGLARLGVGRGDVVS 82
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----KIPE 163
N E+ AC +G PL + F++ H+ + V
Sbjct: 83 FQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAA 142
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
M + L+ +V + + + L D+ P +D
Sbjct: 143 MARELQSKLPALRQVVVIDGDGDDSFDRV----LMTPERDDTPDAAAILAGPRP--SPDD 196
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ ++YTSGTTG+PKGVM + T + + E + +L DV + P+AH
Sbjct: 197 VTQLIYTSGTTGEPKGVMHTAN---TLFSNIHPYAERL--ELGGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 67/327 (20%), Positives = 114/327 (34%), Gaps = 86/327 (26%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKGV + + + + ++ L D + + + FD +E
Sbjct: 3201 VIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS--FDVFVE 3253
Query: 287 EVF--ISNGAAI-----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
E+F + +GA + WR D LL+E
Sbjct: 3254 ELFWPLMSGARVVLAGPEDWR-DPALLVE------------------------------- 3281
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
L+ ++ ++Y P + ++ ++ I+ G L
Sbjct: 3282 -LINSEGVDVLHAY---------------PSMLQAFLEEEDAHRCTSLKRIVCGGEALPA 3325
Query: 400 HVETFLRVVACAHVLQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
+ +V A + YG TE T E +G P+ N +
Sbjct: 3326 --DLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD----- 3378
Query: 459 YDALSSTPRG---EVCVKGSTVFSGYYKREDLTKEVMVDGWF-------HTGDIGEWQPD 508
+L P G E+ + G + GY+ R LT E V F TGD+ ++ D
Sbjct: 3379 -GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 509 GSLKIIDR-----KKNIFKLSQGEYVA 530
G ++ I R K F++ GE A
Sbjct: 3438 GVIEYIGRVDHQVKIRGFRIELGEIEA 3464
|
Length = 5163 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 86/333 (25%), Positives = 132/333 (39%), Gaps = 80/333 (24%)
Query: 216 LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275
LP K I+ TSGTTG PKG + + +AG LL V + + +
Sbjct: 202 LPKPPKPGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAG---LLSRV--PFRAGETTLLPA 255
Query: 276 PLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334
P+ H A + ++ G+ + R D + LEDI + K T VP +L RI
Sbjct: 256 PMFHATGWAHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILD---- 311
Query: 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394
L + L + S + KI+F +SG+
Sbjct: 312 ------LGPEVL----------------AKYDTSSL--KIIF--------------VSGS 333
Query: 395 APLTPHV-----ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVD 448
A L+P + E F V+ + L YG TE T ++ P +++ GTVG P V
Sbjct: 334 A-LSPELATRALEAFGPVL---YNL--YGSTEVAFAT-IATPEDLAEAPGTVGRPPKGVT 386
Query: 449 VCLESVPEMEYDA----LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGE 504
V + D + G + V F GY + K+ ++DG +GD+G
Sbjct: 387 VKI-------LDENGNEVPRGVVGRIFVGNGFPFEGY--TDGRDKQ-IIDGLLSSGDVGY 436
Query: 505 WQPDGSLKIIDRKKNIFKLSQGEYV---AVENL 534
+ DG L + R ++ +S GE V VE+L
Sbjct: 437 FDEDGLLFVDGRDDDMI-VSGGENVFPAEVEDL 468
|
Length = 549 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV 447
R ++ AAP V+ + + + YG TE+ A TF + + +S GTVG P
Sbjct: 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGA 333
Query: 448 DVCL-----ESVPEMEYDALSSTPRGEVCVK--GSTVFSGYYKREDLTKEVMVDGWFHTG 500
++ +P+ E GE+ + G+ F+ Y+ + + E+ G+ +G
Sbjct: 334 ELRFVDEDGRPLPQGE--------IGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSG 384
Query: 501 DIGEWQPDGSLKIIDRKKNI 520
D+G DG L + DRK+++
Sbjct: 385 DVGYLDADGYLFLCDRKRDM 404
|
Length = 509 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
I+YTSGTTG PKGV++S I A + L E+ + T++DV V LPL H+
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIA---ADLDALAEA--WQWTADDVLVHGLPLFHV 181
|
Length = 471 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
++ + N + ++YTSG+TG PKGV +S+ + ++ + L+ L ++D +
Sbjct: 650 EVALDPDN-LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ-----LAADDSMLMV 703
Query: 275 LPLAHIFDRAIEEVF 289
A FD + E+F
Sbjct: 704 STFA--FDLGVTELF 716
|
Length = 3956 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 39/254 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ +L + +R GV + ++ NCP++ I LG VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQ-----REEIE 193
+ + + +G + ++ P + + +T+ H+ S + V P + + +
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIV-TSLADVLPAEPTLPLPDSLR 178
Query: 194 KYGLAVYSWDEFLQL--GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
LA + L LP + + + YT GTTG PKG + ++V +
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMV-YT 237
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIG 311
A V + V++S+LP FW + E+ G
Sbjct: 238 AAAAYA---VAVVGGEDSVFLSFLPE--------------------FW-----IAGENFG 269
Query: 312 ELKPTIFCAVPRVL 325
L P +F VL
Sbjct: 270 LLFP-LFSGATLVL 282
|
Length = 567 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 48/188 (25%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCV------- 131
TY+E++ V + N +++ GV++ + IY PE I M AC +G +H V
Sbjct: 90 TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149
Query: 132 -PLYDTLGAGAVEFIICHSGVSIAFVEEKKIP------EMLKTFPKTTEHLKTIVSFSKV 184
L D + + +I K IP E L+ P + EH +V V
Sbjct: 150 EALADRINDAGAKLVITADE---GLRGGKVIPLKAIVDEALEKCPVSVEH--VLV----V 200
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT-----------IMYTSGT 233
+ G V+ W + + K + C I+YTSG+
Sbjct: 201 RRTGNPVPWVEGRDVW-WHDL------------MAKASAYCEPEPMDSEDPLFILYTSGS 247
Query: 234 TGDPKGVM 241
TG PKGV+
Sbjct: 248 TGKPKGVL 255
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 37/171 (21%), Positives = 53/171 (30%), Gaps = 67/171 (39%)
Query: 385 GRVRLILSGAAPLTPH-----VETFLR-------VVACAHVLQGYGLTETCAGTFVSLPN 432
R+ +GA P+ E F + C YGL E A VS
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFLPC------YGLAE--ATLAVS--- 318
Query: 433 EMSMIGTVGPPVPNVDVCLES-------------------------VPEMEY---DALSS 464
G G + V ++ +P E D +
Sbjct: 319 ----GGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETR 374
Query: 465 TPR-----GEVCVKGSTVFSGYYKREDLTKEVM-------VDGWFHTGDIG 503
P GE+ V+G +V +GY+ R + T E GW TGD+G
Sbjct: 375 RPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 65/316 (20%), Positives = 102/316 (32%), Gaps = 91/316 (28%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKGV V + + + + E L + D + ++ + FD A E
Sbjct: 3242 VIYTSGSTGKPKGVGVRHGALANHLCWIAEAYE-----LDANDRVLLFMSFS--FDGAQE 3294
Query: 287 EVF--ISNGAAIGFWRGDV---KLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341
+ G + D+ + L + I + +I C P L
Sbjct: 3295 RFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYL---------------- 3338
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
+ + + + D VF G A
Sbjct: 3339 --------------QQFAEDAGGADCASL-DIYVF---------------GGEAVPPAAF 3368
Query: 402 ETFLRVVACAHVLQGYGLTET--------CAGTFVSLPNEMSMIGTVGPPVPNV-----D 448
E R + + GYG TE C G V +G PV D
Sbjct: 3369 EQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAP----IGRPVAGRSIYVLD 3424
Query: 449 VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH--------TG 500
L VP GE+ + G + GY++R LT E V F TG
Sbjct: 3425 GQLNPVPVGVA--------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTG 3476
Query: 501 DIGEWQPDGSLKIIDR 516
D+ ++ DG ++ + R
Sbjct: 3477 DLARYRADGVIEYLGR 3492
|
Length = 3956 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ I YTSGTTG PKG M ++ ++ + LT + V +++LPL H+
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLA-----TAAASAAWSGLTPDSVLLAFLPLFHV 137
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 72/343 (20%), Positives = 120/343 (34%), Gaps = 67/343 (19%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
++ ++YTSG+TG PKGV VS+ +V E L+ D + ++ + FD
Sbjct: 2147 NLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYE-----LSPADCELQFMSFS--FD 2199
Query: 283 RAIEEVFIS--NGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
A E+ F NGA + R D L D +L + +LD
Sbjct: 2200 GAHEQWFHPLLNGARV-LIRDDE---LWDPEQLYDEMERHGVTILD-------------- 2241
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
F Y + H + P A ++ G A
Sbjct: 2242 ------FPPVYLQQLAE----HAERDGRPPAVRVY--------------CFGGEAVPAAS 2277
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN-VDVCLESVPEMEY 459
+ + ++ GYG TE + G P+ + + + +
Sbjct: 2278 LRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADL 2337
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF--------HTGDIGEWQPDGSL 511
+ L+ GE+ + G + GY R LT E V F TGD+ ++ DG +
Sbjct: 2338 NLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVV 2397
Query: 512 KIIDR-----KKNIFKLSQGEYVA-VENLENIY-ALVSAIDSV 547
+ + R K F++ GE A ++ + A+V A D
Sbjct: 2398 EYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA 2440
|
Length = 5163 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 22/125 (17%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMVDG-----WFHTGDIGEWQPDGSLKIIDRKKNIFK 522
GE+ + G V GY+ +LT E + + TGD+G ++PDG+++ + R + K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386
Query: 523 LSQ-----GEYVAVEN-LENIYALVSAIDSVWVYGNSFESFLVAIV------NPNKDALE 570
+ GE +E L + A+ V V G+ L A V + L
Sbjct: 387 IRGYRVELGE---IEAALARHPGVQRAV--VVVVGDGGAKALAAFVVAEDGAAVDAAVLR 441
Query: 571 RWAAE 575
AE
Sbjct: 442 AALAE 446
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 27/136 (19%)
Query: 466 PRGEV---CVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521
P+GEV +G F GYYK +G++ +GD+ PDG + ++ R+K+
Sbjct: 376 PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKD-- 433
Query: 522 KLSQ----GEYVAVENLEN--------IY-ALVSAIDSVWVYGNSFESFLVAIVNPNKD- 567
Q GE +A E +EN I+ ALVS D + G +FLV P K
Sbjct: 434 ---QINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDE--LMGEKSCAFLVV-KEPLKAV 487
Query: 568 ALERWAAENGVNGDFK 583
L R+ E G+ +FK
Sbjct: 488 QLRRFLREQGI-AEFK 502
|
Length = 536 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 74/332 (22%), Positives = 118/332 (35%), Gaps = 94/332 (28%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKG + +V + + + L++ DV + + A FD ++
Sbjct: 1723 VIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQ-----LSAADVVLQFTSFA--FDVSVW 1775
Query: 287 EVF--ISNGAAI-----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
E+F + NGA + G R D + L++ I + T VP S L Q +
Sbjct: 1776 ELFWPLINGARLVIAPPGAHR-DPEQLIQLIERQQVTTLHFVP-------SMLQQLLQMD 1827
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
VE ++ R++ G A
Sbjct: 1828 E-----------------------QVEHPL--------SLR-------RVVCGGEALEVE 1849
Query: 400 HVETFLRVVACAHVLQGYGLTETCAG----TFVSLPNEMSMIGTVGPPVPN-----VDVC 450
+ +L + + YG TET T E +G P+ N +D
Sbjct: 1850 ALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDAS 1909
Query: 451 LESVPEMEYDALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMVDGWF--------HTG 500
L VP GE+ + G + GY R LT E V F TG
Sbjct: 1910 LNPVP----------IGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959
Query: 501 DIGEWQPDGSLKI---IDRKKNI--FKLSQGE 527
D+ ++ DG ++ ID + I F++ GE
Sbjct: 1960 DLARYRADGVIEYLGRIDHQVKIRGFRIELGE 1991
|
Length = 3956 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 43/187 (22%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG---LHCVPLYDT 136
++ E+ V ++ A+R GV+ + Y N PE +I M A ++G C P
Sbjct: 88 SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144
Query: 137 LGAGAV---------EFIICHSGVSIA---FVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
G AV + + G +KI E++K P L+ +V +
Sbjct: 145 FGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYL 200
Query: 185 KPEQREEIEKYGLAVYSWD---------EFLQLGENKQFDLPVKKKNDICTIMYTSGTTG 235
+ + K+ W EF +L FD P+ I+Y+SGTTG
Sbjct: 201 SSDAQPAALKFSALTLLWSLAGDRAAPLEFERLP----FDHPL-------WILYSSGTTG 249
Query: 236 DPKGVMV 242
PK +V
Sbjct: 250 LPKC-IV 255
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 213 QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272
+ +D I++TSG+ G PKGV++S+ N++ A V ++ + ED
Sbjct: 784 LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID-----FSPEDKVF 838
Query: 273 SYLPLAHIF 281
+ LP+ H F
Sbjct: 839 NALPVFHSF 847
|
Length = 1140 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
D+F + P+ L G R + TY E+ + ++ + + G+
Sbjct: 7 DLFEAVADAVPDRVALVCGDRRL-----------TYAELEERANRLAHYLIAQGLGPGDH 55
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165
GIY N E++ M V + + +++ S E + P +
Sbjct: 56 VGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVA 115
Query: 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDIC 225
+ P+ L+T+V V+ ++ + +++ L G ++ D + +D+
Sbjct: 116 EVLPRLP-KLRTLVV---VEDGSGNDLLPGAV---DYEDALAAGSPER-DFGERSPDDL- 166
Query: 226 TIMYTSGTTGDPKGVMVSNENI 247
++YT GTTG PKGVM E+I
Sbjct: 167 YLLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 18/88 (20%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC--LLESVNEKLTSEDVYVSYLPLAHI 280
D I+YTSGTTG KGV + + G LE + ++DV + LPL H
Sbjct: 181 DTAAILYTSGTTGPSKGVCCPHAQF--YWWGRNSAEDLE-----IGADDVLYTTLPLFHT 233
Query: 281 -----FDRAI----EEVFISNGAAIGFW 299
F +A+ V +A GFW
Sbjct: 234 NALNAFFQALLAGATYVLEPRFSASGFW 261
|
Length = 542 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 17/170 (10%)
Query: 386 RVRLILSGAAPLTPHVET-FLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
+R I S A +P V+ L ++ ++ G +ET G + G
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSV--SRAGGASATGKFE 193
Query: 445 --PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE--VMVDG--WFH 498
P+ V E E+ S G + G V GYYK + T + +DG +
Sbjct: 194 LGPDTVVLDEDGSEVPPG---SGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAV 249
Query: 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVW 548
GD + DG++ ++ R + GE V E +E + A V
Sbjct: 250 PGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVE---EALKAHPDVA 295
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + V ++ + GV + + NCPE++ A N LG VP+ L
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 140 GAVEFIICHSGVSIAFVEE 158
+ I+ HSG + V+
Sbjct: 65 EELAHILDHSGARLIVVDT 83
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
L V S F LP +DI + Y+SG+T P+GV++++ ++ +
Sbjct: 149 NPLLHVLSHAWFK-ALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRA 207
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAH 279
+ K+ D VS+LP H
Sbjct: 208 ISH----DGLKVRPGDRCVSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFI 251
++YTSG+TG PKGV + + N +
Sbjct: 110 VIYTSGSTGRPKGVAIEHRNAAALL 134
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV--PLYDTL 137
TYKE+ +L K N ++ GVE+ + I+ PE + AL + PL++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLG--ALKNGAIVGPLFEAF 132
Query: 138 GAGAVEFIICHSGVSIAFVEEKKI---PEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIE 193
AV + + E K + P +L+ P LK ++ + E EE
Sbjct: 133 MEEAV-----RDRLEDS--EAKVLITTPALLERKPADDLPSLKHVL----LVGEDVEEGP 181
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
++ ++ + +FD+ + D + YTSG+TG PKGV+
Sbjct: 182 GT----LDFNALME-QASDEFDIEWTDREDGAILHYTSGSTGKPKGVL 224
|
Length = 570 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 466 PRGE-------VCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGDIGEWQPDGSL 511
P GE V K +F GY K ED T+ ++ D W+ TGD+ DG
Sbjct: 295 PVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRW 354
Query: 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
+DR + F+ + E V+ + ++ + ++ VYG
Sbjct: 355 YFLDRLGDTFRW-KSENVSTGEVADVLGAIPSVAEANVYG 393
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGS 510
GE+ ++ ++ GY D T + DG+F TGD+G + DG
Sbjct: 378 GEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQ 421
|
Length = 540 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
L+ G F + +D+ I++TSG+TG PKGV
Sbjct: 155 ATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
|
Length = 552 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 7/157 (4%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
R+RL S L V + ++ G G TE +LP ++ GT G PVP
Sbjct: 279 RLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRY-GTSGKPVP 337
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEW 505
+ L V + D + P GE+ + G + + Y+ T++ W +GD
Sbjct: 338 GYRLRL--VGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVR 394
Query: 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVS 542
DGS R ++ K+S G YV+ +E+ AL+
Sbjct: 395 NDDGSYTYAGRTDDMLKVS-GIYVSPFEIES--ALIQ 428
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLESVNEK 264
L L + D + + YTSG+T P GVMVS+ N I F +
Sbjct: 144 LDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGV 203
Query: 265 LTSEDVYVSYLPLAH 279
+ VS+LP H
Sbjct: 204 PPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 417 YGLTETCAGTFVSLPNEMSMIG--TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474
YG+TET A +L + + G + G +P+ + + + G + ++
Sbjct: 261 YGMTET-ASQIATLKPDDFLAGNNSSGQVLPHAQI-----------TIPANQTGNITIQA 308
Query: 475 STVFSGYY--KREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVE 532
++ GYY + G F T D+G G L I+ R ++ GE V
Sbjct: 309 QSLALGYYPQILDS-------QGIFETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPA 360
Query: 533 NLEN-IYALVSAIDSVWVYG---NSFESFLVAIVNPNKDA 568
+E I A + V V G + + AI P +
Sbjct: 361 EVEAAILA-TGLVQDVCVLGLPDPHWGEVVTAIYVPKDPS 399
|
Length = 452 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 213 QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
F+ + +D+ I+YTSGTTG KG M+S+ N
Sbjct: 147 DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGN 180
|
Length = 504 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 45/185 (24%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+YD V ++ +R GV + + IY PE +I M L C +
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAM-------LACARI------ 121
Query: 140 GAVEFIICHSGVSIAF--------VEEKKIPEMLKTF-----PKTTEHLKTIV----SFS 182
GA+ HS V F +++ K P+++ T P K ++ S
Sbjct: 122 GAI-----HSVVFGGFASKELASRIDDAK-PKLIVTASFGIEPGRVVPYKPLLDKALELS 175
Query: 183 KVKPE-----QREEIEKYGLAVYS--WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTG 235
+ KP R ++ W E + +PV+ D I+YTSGTTG
Sbjct: 176 QHKPHKVLILNRGQVPAPLKPGRDLDWAELMAKARPVDC-VPVES-TDPLYILYTSGTTG 233
Query: 236 DPKGV 240
PKGV
Sbjct: 234 KPKGV 238
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 227 IMYTSGTTGDPKGVMVSNENIV 248
I++TSG+TG PKGVMV IV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624
|
Length = 1296 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 39/241 (16%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
DVF A R+P+ L + I +Y E+ + + GV +
Sbjct: 41 DVFEEAAARHPDRPALLFEDQSI-----------SYAELNARANRYAHWAAARGVGKGDV 89
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---P 162
+ N PE++ LG V L +T GAV + HS + V+ K +
Sbjct: 90 VALLMENRPEYLAAWLGLAKLGA-VVALLNTQQRGAV---LAHS---LNLVDAKHLIVGE 142
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENK-QFDLPVKKK 221
E+++ F + L + ++ E +++ + +
Sbjct: 143 ELVEAFEEARADLARPPRLWVAGGDTLDDPE-------GYEDLAAAAAGAPTTNPASRSG 195
Query: 222 ---NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
D +YTSGTTG PK ++S+ + + G LL +LT +DV LPL
Sbjct: 196 VTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLPLY 250
Query: 279 H 279
H
Sbjct: 251 H 251
|
Length = 600 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 79 KTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ E+ + + N ++ GV + + PE + C LG +P LG
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKT-----FPKTTEH 174
+ + + +G + T PK H
Sbjct: 61 PKDIRYRLERAGARAIVTSADDPALLYFTSGTTGLPKMVLH 101
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
GE+ +G GYY+ + DG++ +GD+ PDG L + R K+ G
Sbjct: 386 GELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRG-G 444
Query: 527 EYVAVENLENIY---------ALVSAIDS 546
E +A E +EN+ ALV+ D
Sbjct: 445 EKIAAEEVENLLLRHPAVHDAALVAMPDE 473
|
Length = 542 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGV 240
V K+D I+YTSGTTG PKG
Sbjct: 95 RVDLKDDPAMIIYTSGTTGKPKGT 118
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
G + +G F GYYK + +G+++TGD+ P+G + ++ R K+ G
Sbjct: 379 GMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRG-G 437
Query: 527 EYVAVENLEN 536
E +A E +EN
Sbjct: 438 EKIAAEEIEN 447
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 663 | |||
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.96 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.94 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.92 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.9 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.86 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.74 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.69 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.88 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 98.69 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.46 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.86 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.67 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.47 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 95.33 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 91.41 |
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-86 Score=753.38 Aligned_cols=655 Identities=74% Similarity=1.261 Sum_probs=552.4
Q ss_pred ceeEEcccccccCCCCCCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHH
Q 006047 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEV 84 (663)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el 84 (663)
+...-+.-.||++.+.|.++++||+.....+++.+.+.+.|+.++|.++++.+||++|+......++..++++++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el 85 (666)
T PLN02614 6 KFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEV 85 (666)
T ss_pred eeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHH
Confidence 45566777889999999999999999888888877778889999999999999999999864111222345678999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhH
Q 006047 85 YDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164 (663)
Q Consensus 85 ~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~ 164 (663)
.++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.++|++++++++|++++....+
T Consensus 86 ~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 165 (666)
T PLN02614 86 YDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISEL 165 (666)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655544
Q ss_pred hhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEecc
Q 006047 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244 (663)
Q Consensus 165 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh 244 (663)
..........++.++.++.............+....++++++..........+...++++++|+|||||||.||||++||
T Consensus 166 ~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth 245 (666)
T PLN02614 166 FKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245 (666)
T ss_pred HHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEec
Confidence 43333222346677777543211111111123446778887765432222223456799999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHH
Q 006047 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRV 324 (663)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~ 324 (663)
+++++.+......+......+.++|++++++|++|.++......+++.|+++++.+.++..+++.+++++||+++++|++
T Consensus 246 ~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~ 325 (666)
T PLN02614 246 ESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRV 325 (666)
T ss_pred HHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHH
Confidence 99998877654433111124678999999999999999876667788999999987799999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHH
Q 006047 325 LDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404 (663)
Q Consensus 325 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~ 404 (663)
+..+...+.........+++++++++++.+...+..+.......+..+.+.+++++..+++++|.+++||+++++.+.+
T Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~- 404 (666)
T PLN02614 326 LDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVES- 404 (666)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH-
Confidence 9999988877777777888899999998887766665545556677788888888888889999999999999988654
Q ss_pred HHHhc-CCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccC
Q 006047 405 LRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYK 483 (663)
Q Consensus 405 ~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~ 483 (663)
+.+.+ ++++++.||+||+++.++...+.+....+++|+|+|+++++|+|.+++...+++.|+.|||+|+||+++.|||+
T Consensus 405 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~ 484 (666)
T PLN02614 405 FLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484 (666)
T ss_pred HHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccC
Confidence 44445 58999999999998665544443333458999999999999998555554567788999999999999999999
Q ss_pred ChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEe
Q 006047 484 REDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVN 563 (663)
Q Consensus 484 ~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~ 563 (663)
+|+.|++.|.+|||+|||+|++|+||+|+++||.+|+|++++|++|+|.+||++|.+||+|.+|+|+|...+..++|+|+
T Consensus 485 ~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv 564 (666)
T PLN02614 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIAN 564 (666)
T ss_pred CHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEe
Confidence 99999999999999999999999999999999999999977899999999999999999999999999887789999999
Q ss_pred cChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 564 PNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
++.+.+..|....+...+..++++++++++.+.+++.+..++..|+.|.++++|.+++++|+++...+||++|++|..+.
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~ 644 (666)
T PLN02614 565 PNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLL 644 (666)
T ss_pred CCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHH
Confidence 99999999988887766788999999999999999999887788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCC
Q 006047 644 KHYQVTFLLVFSEYSLD 660 (663)
Q Consensus 644 ~~~~~~~~~~~~~~~~~ 660 (663)
+.|++.|+++|.+..++
T Consensus 645 ~~y~~~i~~ly~~~~~~ 661 (666)
T PLN02614 645 KYYQSVIDEMYKTTNEK 661 (666)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999987654
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-86 Score=700.18 Aligned_cols=630 Identities=51% Similarity=0.856 Sum_probs=575.7
Q ss_pred Cceeecccc--cCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCC
Q 006047 24 GPVYRSLFA--KDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (663)
Q Consensus 24 ~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~ 101 (663)
+++||+.-. .++++....+..|+++.|++.+..+|+.++|..+...+ ..+.|+++||.|+++++.+++..|++.|++
T Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~ 131 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK 131 (691)
T ss_pred CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence 689999888 67777888899999999999999999999999985433 457899999999999999999999999999
Q ss_pred CCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEc-CCChhhHhhcCCCc-CCCCcEEE
Q 006047 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE-EKKIPEMLKTFPKT-TEHLKTIV 179 (663)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~-~~~~~~~~~~~~~~-~~~~~~ii 179 (663)
+++.|+|+.-|++||+++.+||...|+++||+..+.+++.+.++++++.+.++|++ +.....+++..... .+.++.+|
T Consensus 132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI 211 (691)
T KOG1256|consen 132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII 211 (691)
T ss_pred CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999 55566676666553 57899999
Q ss_pred EecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCC-CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhh
Q 006047 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDL-PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258 (663)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~ 258 (663)
.++.............++.+++|+++...+......+ .++.+++.|.|.|||||||.||||++||+|+++.+.......
T Consensus 212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~ 291 (691)
T KOG1256|consen 212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS 291 (691)
T ss_pred EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence 9999988877778888899999999999997765555 478999999999999999999999999999999766432222
Q ss_pred hhccc-cCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHh
Q 006047 259 ESVNE-KLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (663)
Q Consensus 259 ~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (663)
..... .....|++++++|+.|++....-...++.|+.+.++++|+..+.+.+++.+||.+.++|.+|.++-+.+++...
T Consensus 292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~ 371 (691)
T KOG1256|consen 292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ 371 (691)
T ss_pred hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence 11111 22347999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhH-hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeec
Q 006047 338 SGGLLKKTLFNIAYSYKF-HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQG 416 (663)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~ 416 (663)
....+++++++|+++.+. ..+..|.-+. ..+.++.+.+++.+..++.++|.+++|++|+++++..+++..+|+.|+++
T Consensus 372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG 450 (691)
T KOG1256|consen 372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG 450 (691)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence 999999999999999999 5566654433 89999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCC
Q 006047 417 YGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG 495 (663)
Q Consensus 417 yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g 495 (663)
||+||+++.++...+.+. ..+++|.|+|+++++++|+++.+....+ ..|||||+|+++|+||+++|+.|.+++ .||
T Consensus 451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG 527 (691)
T KOG1256|consen 451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG 527 (691)
T ss_pred ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence 999999977777777666 5599999999999999999888877665 589999999999999999999999999 999
Q ss_pred ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHHHH
Q 006047 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAE 575 (663)
Q Consensus 496 ~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~ 575 (663)
|++|||+|+|+++|.|.+.||.+++|++++|++|.|+.||++....+.|.+.+|.|...+..++|+|+|+++....|...
T Consensus 528 WLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~ 607 (691)
T KOG1256|consen 528 WLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAK 607 (691)
T ss_pred ccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999987
Q ss_pred cCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHhc
Q 006047 576 NGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFS 655 (663)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~ 655 (663)
++...+..++|++.++++.+..++.+..++..|..+...+.|.+.+.||+++.+..||+-|++|.+|.+.|+++||.+|+
T Consensus 608 ~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~ 687 (691)
T KOG1256|consen 608 DGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYK 687 (691)
T ss_pred ccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 67789999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 006047 656 EYS 658 (663)
Q Consensus 656 ~~~ 658 (663)
+..
T Consensus 688 ~~~ 690 (691)
T KOG1256|consen 688 EIK 690 (691)
T ss_pred hcc
Confidence 764
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-84 Score=733.09 Aligned_cols=653 Identities=60% Similarity=1.055 Sum_probs=546.2
Q ss_pred eeEEcccccccCCCCCCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHH
Q 006047 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85 (663)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~ 85 (663)
|-+-++.-.-..+..|.++++||+....+.+.+.++...|++++|.++++++|+++|+......++..++++++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~ 84 (660)
T PLN02861 5 YTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVY 84 (660)
T ss_pred ceeeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHH
Confidence 33434433345567799999999999888887777888999999999999999999997642213334567889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHh
Q 006047 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165 (663)
Q Consensus 86 ~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~ 165 (663)
++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++++....+.
T Consensus 85 ~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~ 164 (660)
T PLN02861 85 DAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSIL 164 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876655544
Q ss_pred hcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccH
Q 006047 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245 (663)
Q Consensus 166 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~ 245 (663)
.........++.++.++.............+....++++++..... ....+...++++++++|||||||.||||++||+
T Consensus 165 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~ 243 (660)
T PLN02861 165 SCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNR 243 (660)
T ss_pred HhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecH
Confidence 4333222346777777643211111111123445678877754422 122234568999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHH
Q 006047 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL 325 (663)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l 325 (663)
++++.+......+.........+|++++++|++|+++....+.+++.|+++++.+.++..+++.|++++||+++++|+++
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~ 323 (660)
T PLN02861 244 AIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVY 323 (660)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHH
Confidence 99988776654431111124688999999999999998776668999999998877999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHH
Q 006047 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFL 405 (663)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 405 (663)
..+...+..+......+++.+++++.+.+...+..+.......+..+.+++++++..+++++|.+++||+++++++.+++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~ 403 (660)
T PLN02861 324 DRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFL 403 (660)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHH
Confidence 99999888888888899999999999999887776655555567788888999999999999999999999999986544
Q ss_pred HHhcC-CceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCC
Q 006047 406 RVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484 (663)
Q Consensus 406 ~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~ 484 (663)
+.++ ..++++||+||+++.++..........+++|+|+|+++++|+|.++.+......++.|||+++||+++.||+++
T Consensus 404 -~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~ 482 (660)
T PLN02861 404 -RVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKR 482 (660)
T ss_pred -HHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCC
Confidence 4555 47999999999987665544333333589999999999999985443323334556899999999999999999
Q ss_pred hhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEec
Q 006047 485 EDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNP 564 (663)
Q Consensus 485 ~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~ 564 (663)
++.|.+.|.+|||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|.++++.++|+|++
T Consensus 483 pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~ 562 (660)
T PLN02861 483 QDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVP 562 (660)
T ss_pred HHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEc
Confidence 99999999999999999999999999999999999999778999999999999999999999999998877899999999
Q ss_pred ChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 565 NKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
+.+.+..|....+...+..+++++++....+.+++.+.+++..++.+.+++++.++++||+++.+++|+++|++|+.+++
T Consensus 563 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~ 642 (660)
T PLN02861 563 DRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLK 642 (660)
T ss_pred CHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHH
Confidence 99988888887765557888899999999999999999987789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCC
Q 006047 645 HYQVTFLLVFSEYSLD 660 (663)
Q Consensus 645 ~~~~~~~~~~~~~~~~ 660 (663)
.|++.|+++|.+....
T Consensus 643 ~y~~~I~~lY~~~~~~ 658 (660)
T PLN02861 643 YYKDCIDQLYSEAKGG 658 (660)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999999986544
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-83 Score=723.34 Aligned_cols=654 Identities=51% Similarity=0.941 Sum_probs=553.7
Q ss_pred eeEEcccccccCCCCCCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHH
Q 006047 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85 (663)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~ 85 (663)
|.+++.-..+.+...|.++++||+......++..+++++|++++|.+.++++|+++|+......++..++++++||+|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~ 83 (660)
T PLN02430 4 FAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVY 83 (660)
T ss_pred eeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHH
Confidence 34566544554457889999999998777787777789999999999999999999998652112333467789999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHh
Q 006047 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165 (663)
Q Consensus 86 ~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~ 165 (663)
+++.++|.+|.+.|+++||+|+|+++|+++|++++|||+++|+++||+++.++++++.++|+.++++++|+++.......
T Consensus 84 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~ 163 (660)
T PLN02430 84 EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL 163 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876443333
Q ss_pred hcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccH
Q 006047 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245 (663)
Q Consensus 166 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~ 245 (663)
.......+.++.++.++.............+....+|++++..+...........++++++++|||||||.||||++||+
T Consensus 164 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~ 243 (660)
T PLN02430 164 EPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHE 243 (660)
T ss_pred hhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecH
Confidence 22212224577788876543221111112244567888888665433333334468999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHH
Q 006047 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL 325 (663)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l 325 (663)
++++.+.............++++|++++++|++|.++....+.++..|+++++...++..+++.+++++||++.++|.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~ 323 (660)
T PLN02430 244 AVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVF 323 (660)
T ss_pred HHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHH
Confidence 99988776543221111246789999999999999998877777899999988877889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHH
Q 006047 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFL 405 (663)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 405 (663)
..+.+.+.........+++.+++++++.+...+..+.......+..+.+.+++++..+++++|.+++||+++++++.+++
T Consensus 324 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~ 403 (660)
T PLN02430 324 ERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL 403 (660)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH
Confidence 99999888888888889999999999999888776655555677788888999999999999999999999999998777
Q ss_pred HHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCCh
Q 006047 406 RVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485 (663)
Q Consensus 406 ~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~ 485 (663)
+...++.++++||+||+++..+.....+....+++|.|.+++++++++.++....+.+.+..|||+|+|++++.||++++
T Consensus 404 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~ 483 (660)
T PLN02430 404 RVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNP 483 (660)
T ss_pred HHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCCh
Confidence 76545789999999999877666554444445899999999999999855555556666778999999999999999999
Q ss_pred hhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecC
Q 006047 486 DLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPN 565 (663)
Q Consensus 486 ~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~ 565 (663)
+.+.+.|.+|||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||+++.+||.|.+|+|+|....+.++|+|+++
T Consensus 484 e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~ 563 (660)
T PLN02430 484 ELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPN 563 (660)
T ss_pred HHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcC
Confidence 99999999999999999999999999999999999998789999999999999999999999999976678999999999
Q ss_pred hHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 566 KDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
.+....|....+...+..++++++++++.+.+++++.+++..|+.|.++++|.+++++|+++...+|+++|++|+.+.+.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~ 643 (660)
T PLN02430 564 EENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKY 643 (660)
T ss_pred HHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHH
Confidence 99999988887776678889999999999999999998767899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccC
Q 006047 646 YQVTFLLVFSEYSL 659 (663)
Q Consensus 646 ~~~~~~~~~~~~~~ 659 (663)
|++.|+++|.+...
T Consensus 644 y~~~i~~ly~~~~~ 657 (660)
T PLN02430 644 YQVEIDEMYRKLAE 657 (660)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999988654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-82 Score=715.69 Aligned_cols=630 Identities=41% Similarity=0.716 Sum_probs=535.3
Q ss_pred CCCCCcCceeecccccCCCCC---CCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHH
Q 006047 18 GGRPSIGPVYRSLFAKDGFPA---PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNA 94 (663)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~ 94 (663)
+-....+.+||+...+.++-+ ..+...+++++|+.+++.+|+++|+..+...++..+.++.+||+||.++++++|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~ 94 (651)
T PLN02736 15 KLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSG 94 (651)
T ss_pred CCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHH
Confidence 345778999999877766643 35567899999999999999999996531113333457889999999999999999
Q ss_pred HHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCC
Q 006047 95 IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEH 174 (663)
Q Consensus 95 L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~ 174 (663)
|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++|+.++++++|++.+....+....... +.
T Consensus 95 L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~-~~ 173 (651)
T PLN02736 95 LVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEI-PS 173 (651)
T ss_pred HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999987666655544332 56
Q ss_pred CcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhh
Q 006047 175 LKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254 (663)
Q Consensus 175 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~ 254 (663)
++.++..+.............+....++++++..............++++++++|||||||.||||++||+++++.+...
T Consensus 174 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~ 253 (651)
T PLN02736 174 VRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS 253 (651)
T ss_pred ceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHH
Confidence 67777765322111111111234567888887654332223334578999999999999999999999999999988887
Q ss_pred hhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHH
Q 006047 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334 (663)
Q Consensus 255 ~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 334 (663)
...+ ++.++|++++++|++|.+++...+.+++.|+++++.+.++..+++.|+++++|+++++|.++..+.+.+..
T Consensus 254 ~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~ 328 (651)
T PLN02736 254 SLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITN 328 (651)
T ss_pred Hhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHH
Confidence 7665 77899999999999999999888888999999999888899999999999999999999999999998888
Q ss_pred HHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCcee
Q 006047 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414 (663)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~ 414 (663)
.......++++++.+++..+.+.+..+. ...+.++.+.+++++..+++++|.+++||+++++++.+++++.+|..++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~ 405 (651)
T PLN02736 329 AVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVL 405 (651)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeE
Confidence 8888899999999998887766555432 2234567777888888888899999999999999999999988899999
Q ss_pred ecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccc-cCCCCCCCeEEEccCcccccccCChhhhhccc-
Q 006047 415 QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD-ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (663)
Q Consensus 415 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~-~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~- 492 (663)
+.||+||+++.+....... ...+++|+|+|+++++|+|.+++... ....++.|||+++||+++.||+++++.+++.|
T Consensus 406 ~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~ 484 (651)
T PLN02736 406 EGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID 484 (651)
T ss_pred EEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc
Confidence 9999999987665554433 34589999999999999984332211 11233579999999999999999999999988
Q ss_pred cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHH
Q 006047 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERW 572 (663)
Q Consensus 493 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~ 572 (663)
.+|||+|||+|++|+||+|+++||.+|+|++++|++|+|.+||++|..||.|.+|+|+|...++.++|+|+++++.+..|
T Consensus 485 ~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~ 564 (651)
T PLN02736 485 EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAW 564 (651)
T ss_pred cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHH
Confidence 68999999999999999999999999999976899999999999999999999999999766789999999999988888
Q ss_pred HHHcCC-CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 573 AAENGV-NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 573 ~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
....+. ..++.++++++++.+.+.+.|.+.+++..|+.|++|++|.+++++|+++.+++|++||++|++|++.|++.++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~ 644 (651)
T PLN02736 565 AASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAIS 644 (651)
T ss_pred HHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHH
Confidence 887776 6789999999999999999999998877899999999999999999999999999999999999999999999
Q ss_pred HHhccc
Q 006047 652 LVFSEY 657 (663)
Q Consensus 652 ~~~~~~ 657 (663)
++|.+.
T Consensus 645 ~~y~~~ 650 (651)
T PLN02736 645 DMYAEL 650 (651)
T ss_pred HHHhhc
Confidence 999764
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-79 Score=695.88 Aligned_cols=628 Identities=35% Similarity=0.608 Sum_probs=527.1
Q ss_pred CcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEee--------ccC------CCCcceEeeHHHHHHH
Q 006047 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREI--------VDG------KAGKYVWKTYKEVYDL 87 (663)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~--------~d~------~~~~~~~~Ty~el~~~ 87 (663)
.++.+||+...+.-.....++..|+.++|.++++.+||++|+..+.+ .++ ..++|+++||+|+.++
T Consensus 36 ~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~ 115 (696)
T PLN02387 36 EPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFER 115 (696)
T ss_pred CCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHH
Confidence 34446999986644444557889999999999999999999965311 012 1256788999999999
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhc
Q 006047 88 VIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167 (663)
Q Consensus 88 v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~ 167 (663)
++++|.+|.+.|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.++|+.++++++|++.+....+...
T Consensus 116 v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~ 195 (696)
T PLN02387 116 VCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDI 195 (696)
T ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776666554
Q ss_pred CCCcCCCCcEEEEecCCChhhHHH-HhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHH
Q 006047 168 FPKTTEHLKTIVSFSKVKPEQREE-IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246 (663)
Q Consensus 168 ~~~~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~ 246 (663)
.... +.++.++.+++........ ....++...+|+++...+...........++++++++|||||||.||||++||++
T Consensus 196 ~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~ 274 (696)
T PLN02387 196 SSQL-ETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN 274 (696)
T ss_pred hhcc-CCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHH
Confidence 4332 5678888887543211100 0122445678888876654333333445789999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC----C-----HHHHHHHhhhcCCcE
Q 006047 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG----D-----VKLLLEDIGELKPTI 317 (663)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~~t~ 317 (663)
+++.+......+ ..+.++|++++++|++|++++.....++..|+++.+... + +..+...+++++||+
T Consensus 275 l~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~ 350 (696)
T PLN02387 275 IVATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTL 350 (696)
T ss_pred HHHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcE
Confidence 999887765432 146789999999999999999887777888888765332 1 234567899999999
Q ss_pred EEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCC--CCCcchhhHHHhHHHHHHHcCCceEEEEecCC
Q 006047 318 FCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK--HVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395 (663)
Q Consensus 318 l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~ 395 (663)
++++|.++..+.+...........+.+.++++++..++..+...+. ....+..++.+.+++++..+++++|.+++||+
T Consensus 351 ~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGa 430 (696)
T PLN02387 351 MTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGA 430 (696)
T ss_pred EEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCC
Confidence 9999999999998887777788889999999999888776543211 13456778888999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccC-CCCCCCeEEEcc
Q 006047 396 PLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKG 474 (663)
Q Consensus 396 ~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~-~~g~~Gel~v~g 474 (663)
++++++.++++..+|++++++||+||+++.++.....+. ..+++|.|+|+++++|+|.++++.... .++..|||+|+|
T Consensus 431 pl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG 509 (696)
T PLN02387 431 PLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG 509 (696)
T ss_pred CCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc
Confidence 999999988888889999999999999876665544333 348999999999999998555543221 234579999999
Q ss_pred CcccccccCChhhhhcccc---CC--ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEE
Q 006047 475 STVFSGYYKREDLTKEVMV---DG--WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWV 549 (663)
Q Consensus 475 ~~~~~gy~~~~~~~~~~~~---~g--~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v 549 (663)
|+++.||+++++.|++.|. +| ||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|
T Consensus 510 p~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V 589 (696)
T PLN02387 510 PSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMV 589 (696)
T ss_pred CcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEE
Confidence 9999999999999999882 35 999999999999999999999999999878999999999999999999999999
Q ss_pred EeeCCCCeEEEEEecChHHHHHHHHHcCC-CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCC
Q 006047 550 YGNSFESFLVAIVNPNKDALERWAAENGV-NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIER 628 (663)
Q Consensus 550 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~ 628 (663)
+|.+....++|+|+++.+.+..|....+. ..++.+++++++..+.+.+.+.+.+++.+|+.+++|++|.++++||+++.
T Consensus 590 ~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~ 669 (696)
T PLN02387 590 HADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPES 669 (696)
T ss_pred EecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCC
Confidence 99887789999999999999999988877 57789999999999999999999988789999999999999999999999
Q ss_pred CccCcccccchHHHHHHHHHHHHHHhc
Q 006047 629 DLLTPTYKKKRPQLLKHYQVTFLLVFS 655 (663)
Q Consensus 629 ~p~t~~GKv~R~~l~~~~~~~~~~~~~ 655 (663)
+..||++|++|+.+++.|++.|+++|.
T Consensus 670 g~lT~t~K~~R~~i~~~y~~~i~~ly~ 696 (696)
T PLN02387 670 GLVTAALKLKREQIRKKFKDDLKKLYE 696 (696)
T ss_pred CcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999995
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-78 Score=686.48 Aligned_cols=618 Identities=26% Similarity=0.441 Sum_probs=510.3
Q ss_pred CCCCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC
Q 006047 19 GRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC 98 (663)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~ 98 (663)
...+++++||....... .+.....||.++|.++++++|+++|++.. + .+..++++||+|+.+++.++|++|.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~ 111 (746)
T PTZ00342 38 TNENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTY 111 (746)
T ss_pred CCCCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 35677789998887777 44577899999999999999999999753 2 122468899999999999999999974
Q ss_pred ---CCCCC-----------CEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhH
Q 006047 99 ---GVEER-----------GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164 (663)
Q Consensus 99 ---gv~~g-----------d~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~ 164 (663)
|+++| |+|+|+++|+++|+++.|||+++|+++||++++++.+++.++|++++++++|++.+..+.+
T Consensus 112 ~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l 191 (746)
T PTZ00342 112 EGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGL 191 (746)
T ss_pred hhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999987776666
Q ss_pred hhcCCCcCCCCcEEEEecCCChh------------------hH-------------------------------------
Q 006047 165 LKTFPKTTEHLKTIVSFSKVKPE------------------QR------------------------------------- 189 (663)
Q Consensus 165 ~~~~~~~~~~~~~ii~~~~~~~~------------------~~------------------------------------- 189 (663)
...... .+.++.++.++..... ..
T Consensus 192 ~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (746)
T PTZ00342 192 LERKNE-LPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270 (746)
T ss_pred HHhhcc-CCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHH
Confidence 655443 3677888888652110 00
Q ss_pred --HHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCC
Q 006047 190 --EEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267 (663)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 267 (663)
......+....+++++..... .........++++++|+|||||||.||||++||+++++.+....... ......
T Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~ 346 (746)
T PTZ00342 271 LKEKAKKLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYN 346 (746)
T ss_pred HHHHhhcCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCC
Confidence 000111233445555544321 12223345689999999999999999999999999999887654321 001235
Q ss_pred CcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 006047 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (663)
Q Consensus 268 ~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (663)
.+++++++|++|++++...+.+++.|+++++++.++..+++.|++++||+++++|.++..+...+.......+.++++++
T Consensus 347 ~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~ 426 (746)
T PTZ00342 347 PKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLV 426 (746)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 68999999999999998878889999999998779999999999999999999999999999988888888888999999
Q ss_pred HHHHHhhHhhhhcCCCCCCcchhhHHH--hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc
Q 006047 348 NIAYSYKFHNLKKGHKHVEASPIADKI--VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425 (663)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 425 (663)
+++++.+.+... +. ..+.++.+ .++++++.+++++|.+++||+++++++.++++..+|++++++||+||+++.
T Consensus 427 ~~a~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~ 501 (746)
T PTZ00342 427 KKILSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGP 501 (746)
T ss_pred HHHHHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccce
Confidence 999988876432 21 23344333 578889999999999999999999999999998889999999999999876
Q ss_pred eeccCCCCccccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEE
Q 006047 426 TFVSLPNEMSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIG 503 (663)
Q Consensus 426 ~~~~~~~~~~~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg 503 (663)
++...... ...+++|.|+ |+++++++|.++.... +.+..|||+++||+++.|||++|+.|++.| .||||+|||+|
T Consensus 502 ~~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~--~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig 578 (746)
T PTZ00342 502 IFVQHADD-NNTESIGGPISPNTKYKVRTWETYKAT--DTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIV 578 (746)
T ss_pred eeeccCCC-CCcccccCcCCCcEEEEEecccccccC--CCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEE
Confidence 66555443 3458999998 9999999984432222 233579999999999999999999999999 69999999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHHHHcC------
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENG------ 577 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~------ 577 (663)
++|+||+|+++||.+|+|++++|++|+|.+||+++.+||.|.+|+|+|.+..+.++|+|+++.+....|....+
T Consensus 579 ~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~ 658 (746)
T PTZ00342 579 QINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTG 658 (746)
T ss_pred EECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccc
Confidence 99999999999999999998789999999999999999999999999987677999999999999999887653
Q ss_pred C-CCChhh-----hhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH---H
Q 006047 578 V-NGDFKS-----LCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ---V 648 (663)
Q Consensus 578 ~-~~~~~~-----~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~---~ 648 (663)
. ..+..+ .++++++.+.+.+.+.+..++..|+.+..+++|.++.++|+++ ..+||+.|++|+.+.+.|+ +
T Consensus 659 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~-~~lTpt~KlkR~~v~~~y~~~i~ 737 (746)
T PTZ00342 659 INEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTN-NYLTPTFKVKRFYVFKDYAFFID 737 (746)
T ss_pred cCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCC-CccChhhhhhHHHHHHHHHHHHH
Confidence 2 223333 4566778999999999997767999999999999999999996 4799999999999999999 6
Q ss_pred HHHHHhcc
Q 006047 649 TFLLVFSE 656 (663)
Q Consensus 649 ~~~~~~~~ 656 (663)
.++.+|.+
T Consensus 738 ~i~~~y~~ 745 (746)
T PTZ00342 738 QVKKIYKN 745 (746)
T ss_pred HHHHHhcC
Confidence 77777754
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-78 Score=609.52 Aligned_cols=638 Identities=36% Similarity=0.629 Sum_probs=570.4
Q ss_pred ceeEEcccccccCCCCCCcCceeecccccCCCCC-CCCCCCCHHHHHHHHHHhCCCCCceEEEee--------ccCC---
Q 006047 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREI--------VDGK--- 72 (663)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~--------~d~~--- 72 (663)
++-|++.++ .++.++.+|||-.+..++-. +.++..|++++|++..+++.++.++..+++ +||+
T Consensus 6 ~~~V~~~~~-----~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~ 80 (678)
T KOG1180|consen 6 KYRVKAKPA-----ANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFE 80 (678)
T ss_pred hcccccCCC-----CCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEE
Confidence 344555443 36789999999998776664 467799999999999999999999976643 2443
Q ss_pred ---CCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhh
Q 006047 73 ---AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK-CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICH 148 (663)
Q Consensus 73 ---~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~-V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~ 148 (663)
-++|.++||.|++.++.++|++|.+.|++++++ ++|+.+-+.+|..+++||++.+..+|.+..++..+.+.+-|++
T Consensus 81 k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~E 160 (678)
T KOG1180|consen 81 KYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNE 160 (678)
T ss_pred EEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhcc
Confidence 247889999999999999999999999997777 9999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCCh----hhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCe
Q 006047 149 SGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP----EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDI 224 (663)
Q Consensus 149 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (663)
++++.+||+.+.++.+..-.... ..++.+|.+++.+. +....+-..++.++++++++..++....++.++.++|+
T Consensus 161 t~~~~i~T~~~LL~kl~~~l~~~-~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Di 239 (678)
T KOG1180|consen 161 TESTAIFTDSELLPKLKAPLKQA-KTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDI 239 (678)
T ss_pred ccceEEEeCHHHHHHHHHHHhcc-CceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCce
Confidence 99999999999988665554444 89999999985332 22223333578999999999998876666666688999
Q ss_pred EEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC-C-
Q 006047 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-D- 302 (663)
Q Consensus 225 a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~- 302 (663)
|+|+|||||||.||||+++|.|+++.+.......+ .+.+.|+++.++|+.|++-+.+-+.+++.|+.+...+. +
T Consensus 240 a~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~----~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TL 315 (678)
T KOG1180|consen 240 ACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVP----ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTL 315 (678)
T ss_pred EEEEEcCCCCCCCceEEEecccHHhhhhhhcccCc----ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCccee
Confidence 99999999999999999999999999998776552 68899999999999999999999999999999987653 1
Q ss_pred ---HHHHH----HHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHh
Q 006047 303 ---VKLLL----EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375 (663)
Q Consensus 303 ---~~~~~----~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (663)
...+. -.+...+||++.++|..++++-+.+..+....+.+++++|..+|..|+.+++. ....++.++.+.
T Consensus 316 tdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~---~g~~s~~ld~lV 392 (678)
T KOG1180|consen 316 TDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER---NGPGSPLLDALV 392 (678)
T ss_pred cccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc---cCCchhhHHHHH
Confidence 11111 23567899999999999999999999999999999999999999999988873 245688999999
Q ss_pred HHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecC
Q 006047 376 FDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVP 455 (663)
Q Consensus 376 ~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~ 455 (663)
|++.+...+.+||.+++||++++++..+++.-.+.+++.++||.||+++..+...+.+... +.+|.|++.++++++|.+
T Consensus 393 FkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~ 471 (678)
T KOG1180|consen 393 FKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWE 471 (678)
T ss_pred HHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhh
Confidence 9999999999999999999999999999999999999999999999999988888777766 899999999999999999
Q ss_pred CCccccCCCCCCCeEEEccCcccccccCChhhhhccc--cCC--ceecCcEEEEcCCCcEEEeeeccceeecCCCceecc
Q 006047 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAV 531 (663)
Q Consensus 456 ~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~ 531 (663)
|++..+-+.-..||||++|+++..||+++++.|.+.| .|| ||+|||+|++.+||+|.+.+|.+|++|+.+|+.|+.
T Consensus 472 EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL 551 (678)
T KOG1180|consen 472 EGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISL 551 (678)
T ss_pred hcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeeh
Confidence 9988776544689999999999999999999999999 488 999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHHHHcCC-CCChhhhhcChHHHHHHHHHHHHHHHHcCCCC
Q 006047 532 ENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGV-NGDFKSLCENPKAKEFILGELSRVAKEKKLKG 610 (663)
Q Consensus 532 ~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~ 610 (663)
+-+|.+++..|.|+..+|.++.....++++|||+......++.+.+. ..+..++|++.+..+.+.++|.+..+++.|..
T Consensus 552 ~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~ 631 (678)
T KOG1180|consen 552 GKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLER 631 (678)
T ss_pred HHHHHHHhcCcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988899999999999999999999999 55999999999999999999999999899999
Q ss_pred ccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHhcc
Q 006047 611 FEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSE 656 (663)
Q Consensus 611 ~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~~ 656 (663)
+.+|..|++.++||+++.+-.|..-|++|+.+++.|++.++.+|.+
T Consensus 632 iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~ 677 (678)
T KOG1180|consen 632 IEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE 677 (678)
T ss_pred ccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999986
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-76 Score=674.21 Aligned_cols=623 Identities=28% Similarity=0.496 Sum_probs=513.3
Q ss_pred CCcCceeecccccC----CCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeec----------cCC--------CCcceE
Q 006047 21 PSIGPVYRSLFAKD----GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV----------DGK--------AGKYVW 78 (663)
Q Consensus 21 ~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~----------d~~--------~~~~~~ 78 (663)
+..+++||...... .+.....+..|+.++|.++++.+||++|+..+... ++. .+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (700)
T PTZ00216 42 ENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRY 121 (700)
T ss_pred CCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceE
Confidence 34688999765333 22223345679999999999999999999985110 111 124689
Q ss_pred eeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcC
Q 006047 79 KTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (663)
Q Consensus 79 ~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~ 158 (663)
+||+||.++++++|.+|.++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++.
T Consensus 122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~ 201 (700)
T PTZ00216 122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG 201 (700)
T ss_pred eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhccc--ccCC-CCCCCCCCCeEEEEEccCCCC
Q 006047 159 KKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQF-DLPVKKKNDICTIMYTSGTTG 235 (663)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~a~i~~TSGtTG 235 (663)
.....+.............++.++..... ....+....+|++++..+. .... ......++++++++|||||||
T Consensus 202 ~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG 277 (700)
T PTZ00216 202 KNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG 277 (700)
T ss_pred HHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC
Confidence 76555444332211112345555432111 1123456778998887652 1111 123446899999999999999
Q ss_pred CCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHH-------
Q 006047 236 DPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLE------- 308 (663)
Q Consensus 236 ~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~------- 308 (663)
.||||++||+++++.+..+...+........++|++++++|++|.+++.....+++.|+++++. ++..+.+
T Consensus 278 ~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~ 355 (700)
T PTZ00216 278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHG 355 (700)
T ss_pred cCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccc
Confidence 9999999999999988776544311111246789999999999999987766778888887663 4555554
Q ss_pred HhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceE
Q 006047 309 DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388 (663)
Q Consensus 309 ~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 388 (663)
.+++++||++.++|.++..+.+...........++++++++++..+++.+..+. ..+.++.+.+++.+..+++++|
T Consensus 356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr 431 (700)
T PTZ00216 356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVR 431 (700)
T ss_pred hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEE
Confidence 688999999999999999999988888888888999999999998887766542 4566788888999999999999
Q ss_pred EEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCC
Q 006047 389 LILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRG 468 (663)
Q Consensus 389 ~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~G 468 (663)
.+++||+++++++.++++..++ +++++||+||+++.+........ ..+++|+|+++++++|+| +++.......+..|
T Consensus 432 ~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~G 508 (700)
T PTZ00216 432 AMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRG 508 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCc
Confidence 9999999999999988887778 99999999999876655544332 348999999999999999 44433333455689
Q ss_pred eEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcce-
Q 006047 469 EVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDS- 546 (663)
Q Consensus 469 el~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~- 546 (663)
||+|+|++++.||+++++.|++.| .+|||+|||+|++|+||+|+++||.+|+|+..+|++|+|.+||+++.+||.|.+
T Consensus 509 EL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~ 588 (700)
T PTZ00216 509 EILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPN 588 (700)
T ss_pred eEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccc
Confidence 999999999999999999999999 789999999999999999999999999998558999999999999999999997
Q ss_pred -EEEEeeCCCCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCC
Q 006047 547 -VWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFD 625 (663)
Q Consensus 547 -~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~ 625 (663)
++|++.++...++|+|+++.+....|....+...++.++++++++.+.+.+.+.+.+++..+..|..|++|.+++++|+
T Consensus 589 ~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~ 668 (700)
T PTZ00216 589 GVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWT 668 (700)
T ss_pred eEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCC
Confidence 4566666678999999999999888888877667788999999999999999999988789999999999999999999
Q ss_pred CCCCccCcccccchHHHHHHHHHHHHHHhcc
Q 006047 626 IERDLLTPTYKKKRPQLLKHYQVTFLLVFSE 656 (663)
Q Consensus 626 ~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~~ 656 (663)
++.+.+|+++|++|+++++.|++.++++|.+
T Consensus 669 ~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~ 699 (700)
T PTZ00216 669 PENGVLTAAMKLKRRVIDERYADLIKELFAD 699 (700)
T ss_pred CCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999975
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-75 Score=625.20 Aligned_cols=591 Identities=34% Similarity=0.578 Sum_probs=495.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
....++..++.++++.+|+.+|+... ..+.++.+||+|+.+++..+|.+|+..|+.+||+|+|++.|+++|+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d 87 (613)
T COG1022 13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD 87 (613)
T ss_pred hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578999999999999998888765 3567799999999999999999999999988999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
+||+.+|++.||+.++.+++++.++|++++++++|++...............+.+...+...+....... .........
T Consensus 88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 166 (613)
T COG1022 88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE-AKALVLEVF 166 (613)
T ss_pred HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccc-hhhcccccc
Confidence 9999999999999999999999999999999999999865554443332211112222211110000000 000000000
Q ss_pred eHHHHH---hcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh
Q 006047 201 SWDEFL---QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (663)
Q Consensus 201 ~~~~~~---~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 277 (663)
...... ...........+..++|+|.++|||||||.||||++||+|+++++..+...+. ..+++|++++++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~----~~~~~d~~LsfLPl 242 (613)
T COG1022 167 PDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP----PIGPGDRVLSFLPL 242 (613)
T ss_pred ccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC----CCCCCcEEEEeCcH
Confidence 000000 11111122224678999999999999999999999999999999999988771 28899999999999
Q ss_pred hhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 278 AHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
.|++...+.......++..++...++..+...+++++||.++++|..|+.+-+.+.++.......++.+|.|+++.+...
T Consensus 243 aHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~ 322 (613)
T COG1022 243 AHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKK 322 (613)
T ss_pred HHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 99999987444444444444445599999999999999999999999999999999999999999999999999776432
Q ss_pred hhc---CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCc
Q 006047 358 LKK---GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (663)
Q Consensus 358 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (663)
... +.+.....-..+.+.|++++..++.++|.+++||+++++++..+++. .|+++.++||+||+++..+.+++...
T Consensus 323 ~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~-lGi~i~eGYGlTEts~~~~v~~~~~~ 401 (613)
T COG1022 323 ISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRS-LGIPILEGYGLTETSAVVSVNPPDRF 401 (613)
T ss_pred HHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHH-cCCCeEEEecccccccceEEccccCc
Confidence 111 11222222338899999999999999999999999999999999996 58999999999999999999888777
Q ss_pred cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 435 ~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
.. +++|.|+|+++++|+| .|||+|+||++|.|||++|+.|+++| .||||+|||+|.+|++|+|++
T Consensus 402 ~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i 467 (613)
T COG1022 402 VL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVI 467 (613)
T ss_pred cc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEE
Confidence 66 9999999999999998 59999999999999999999999999 699999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHHHHcCC--CCChhhhhcChHH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGV--NGDFKSLCENPKA 591 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 591 (663)
.||.+|+|++++|++|.|..||..+..+|.|.+++|+| ++...+.|+|+|+.+....|....+. ..+..+++.++++
T Consensus 468 ~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l 546 (613)
T COG1022 468 TGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKL 546 (613)
T ss_pred eecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHH
Confidence 99999999999999999999999999999999999999 77899999999999999999888885 5788999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHhccccC
Q 006047 592 KEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSEYSL 659 (663)
Q Consensus 592 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~~~~~ 659 (663)
.+.+.+.+.+... .+..+..++++.++..+|+.+....|++-|++|..+.+.|.+.++.+|.+...
T Consensus 547 ~~~~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~~~ 612 (613)
T COG1022 547 LKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQSL 612 (613)
T ss_pred HHHHHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhcccC
Confidence 9999999998887 44788999999999999999999999999999999999999999999988753
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=608.85 Aligned_cols=507 Identities=28% Similarity=0.357 Sum_probs=412.3
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCchhhHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCG--VEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~g--v~~gd~V~i~~~n~~~~~~~~l 121 (663)
..+..+.+.......+.+.+++. +.. -+.+||.|++.++.++|.+|.++| +++||+|++++||+++++.++|
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~l 90 (537)
T KOG1176|consen 17 TPITFLGRPAFVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELAL 90 (537)
T ss_pred cccccccccccccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHH
Confidence 33444444433333333777765 321 167999999999999999999875 8999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+.+|++..++||.+.+.++.+.++.++++++|++......+.+...... ..++++........ .+ ......+
T Consensus 91 a~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~--~~-~~~~~~~ 164 (537)
T KOG1176|consen 91 AVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVIS--IS-DLVEDLD 164 (537)
T ss_pred HHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCccc--cc-ccccccc
Confidence 999999999999999999999999999999999999999988877665432 44455443211000 00 0000111
Q ss_pred -HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 202 -WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
+..+...... .. ..+...+|++.+.|||||||.||||.+||++++.+........ .....++.++.+|++|.
T Consensus 165 ~~~~~~~~~~~-~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~ 237 (537)
T KOG1176|consen 165 AFEDLMPEGLP-DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHI 237 (537)
T ss_pred chhhccccCCC-cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHH
Confidence 2222222211 11 4566779999999999999999999999999999877655544 56679999999999999
Q ss_pred HHHHHHHH-HHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 281 FDRAIEEV-FISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 281 ~g~~~~~~-~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
+|+...+. .+..|+++++.+. ++..+++.|++|++|+++++|+++..+++.
T Consensus 238 ~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~--------------------------- 290 (537)
T KOG1176|consen 238 YGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS--------------------------- 290 (537)
T ss_pred hHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC---------------------------
Confidence 99988666 5666667777776 999999999999999999999999998762
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC-CceeecccccccccceeccCCCCcccc
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMI 437 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~ 437 (663)
|.... +.+++++.+++||+++++++.+++++.++ ..+.++||+||+++.++.+.......+
T Consensus 291 ----------p~~~~--------~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~ 352 (537)
T KOG1176|consen 291 ----------PIVKK--------YDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKP 352 (537)
T ss_pred ----------CccCc--------ccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcc
Confidence 21222 22379999999999999999999999998 899999999999977776665554567
Q ss_pred CccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccC-CceecCcEEEEcCCCcEEEeee
Q 006047 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 438 ~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G~l~~~GR 516 (663)
+++|.+++++++++.+ +.|. .++.++.||||++|++++.||++||+.|++.|.+ |||+|||+|++|+||+|++.+|
T Consensus 353 ~svG~~~~g~~~~v~~-e~g~--~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR 429 (537)
T KOG1176|consen 353 GSVGRLLPGVRVKVLD-ETGV--SLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDR 429 (537)
T ss_pred cccCccccceEEEeeC-CCCC--CCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecc
Confidence 9999999999988887 5554 4556699999999999999999999999999955 9999999999999999999999
Q ss_pred ccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 517 KKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 517 ~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
.+|+||. +|++|+|.|||++|.+||.|.||+|||.+|+ +.++|+|+++++. .
T Consensus 430 ~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~------------------------~ 484 (537)
T KOG1176|consen 430 SKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS------------------------T 484 (537)
T ss_pred hhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC------------------------c
Confidence 9999996 9999999999999999999999999999876 7999999999743 1
Q ss_pred HHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 594 FILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.-.++|.++++ ++|++|++|..++|+++. |+|++|||+|+.|++++.+.
T Consensus 485 lte~di~~~v~-k~l~~y~~~~~V~Fvd~l------PKs~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 485 LTEKDIIEYVR-KKLPAYKLPGGVVFVDEL------PKTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred CCHHHHHHHHH-hhCChhhccCeEEEeccC------CCCCcchHHHHHHHHHHHhc
Confidence 12355666666 789999999999999776 89999999999999999764
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=558.61 Aligned_cols=515 Identities=23% Similarity=0.313 Sum_probs=444.2
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhH
Q 006047 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (663)
Q Consensus 38 ~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (663)
..+-.+.|+++.++..+++.||+.|+++.. .+ .++||+|+.+.++++|.+|...|+++||+|++..||+.+|+
T Consensus 44 ~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~ 116 (596)
T KOG1177|consen 44 QIPLDSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWV 116 (596)
T ss_pred CCCcccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHH
Confidence 345668999999999999999999999873 33 45899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh-----hhHhhcC------------CCcCCCCcEEEE
Q 006047 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTF------------PKTTEHLKTIVS 180 (663)
Q Consensus 118 ~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~-----~~~~~~~------------~~~~~~~~~ii~ 180 (663)
..+|||.++|.+.+++||.|..++++..|+..+++++|+..... ..+++.. ++.++++..+|.
T Consensus 117 l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~ 196 (596)
T KOG1177|consen 117 LCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVIL 196 (596)
T ss_pred HHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEe
Confidence 99999999999999999999999999999999999999976422 2222222 344578888888
Q ss_pred ecCCChhhHHHHhhcCcEEEeHHHHHhcccccC-----CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhh
Q 006047 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ-----FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK 255 (663)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~ 255 (663)
.++..+ ..+.+.+++++..+.... ....-..+|+++.|.|||||||.|||+.+||.+++++.....
T Consensus 197 ~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg 267 (596)
T KOG1177|consen 197 ADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVG 267 (596)
T ss_pred cCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHH
Confidence 874322 345788889887765422 223345779999999999999999999999999999999988
Q ss_pred hhhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHH
Q 006047 256 CLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332 (663)
Q Consensus 256 ~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~ 332 (663)
..+ ++...+++.+..|++|.+|+.. .+.+++.|+|++++.. ++...+++|+++++|.++++|+++..+++.
T Consensus 268 ~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~- 341 (596)
T KOG1177|consen 268 ARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNI- 341 (596)
T ss_pred HHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcc-
Confidence 888 8888889999999999999866 7889999999999765 999999999999999999999999998752
Q ss_pred HHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCC-
Q 006047 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA- 411 (663)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~- 411 (663)
|.....++ +++|.++.||+++++++.+.+....++
T Consensus 342 ------------------------------------~~~~~~~~--------s~lr~~vigGa~~s~eLlk~iv~~~~m~ 377 (596)
T KOG1177|consen 342 ------------------------------------PQKQQVDL--------SSLRKGVIGGAPVSPELLKLIVNQMNMK 377 (596)
T ss_pred ------------------------------------hhhccCch--------hhhhhheeCCCCCCHHHHHHHHHhhCce
Confidence 22222222 689999999999999999999987764
Q ss_pred ceeecccccccccceeccCCCCcc--ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhh
Q 006047 412 HVLQGYGLTETCAGTFVSLPNEMS--MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489 (663)
Q Consensus 412 ~v~~~yG~tE~~~~~~~~~~~~~~--~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~ 489 (663)
.+...||+||++...+....++.. ...++|..+++.+..++| .++...+++ ..||||++|++.+.|||++++.+.
T Consensus 378 ~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~~kT~ 454 (596)
T KOG1177|consen 378 DIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGEEEKTK 454 (596)
T ss_pred eeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCCcccch
Confidence 477899999999888877766543 357999999999999999 888777665 679999999999999999999888
Q ss_pred ccc-cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecC
Q 006047 490 EVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPN 565 (663)
Q Consensus 490 ~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~ 565 (663)
+.. .|.||+|||.|.+|++|.++++||.+|+|+ +||++|+|.|||+.|.+||.|.++.|+|++|+ +.+||+|.+.
T Consensus 455 eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLq 533 (596)
T KOG1177|consen 455 ETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQ 533 (596)
T ss_pred hhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEee
Confidence 877 889999999999999999999999999998 79999999999999999999999999999876 6899999988
Q ss_pred hHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 566 KDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
.+.. .....++|+.+|+ +++..|+.|+.|+++++ | |+|.+|||+|-++|++
T Consensus 534 e~~e----------------------~~~t~E~lKa~Ck-~klaHFKiPky~vf~~~-F-----PlT~tGKIqKFeir~~ 584 (596)
T KOG1177|consen 534 EGAE----------------------GKTTAETLKAMCK-GKLAHFKIPKYFVFVDE-F-----PLTTTGKIQKFEIREM 584 (596)
T ss_pred cccc----------------------ccccHHHHHHHHh-cccccccCCcEEEEecc-C-----cccccccchhHHHHHH
Confidence 7541 1245678888888 77999999999999977 4 8999999999999999
Q ss_pred HHHHHH
Q 006047 646 YQVTFL 651 (663)
Q Consensus 646 ~~~~~~ 651 (663)
...++.
T Consensus 585 ~k~~l~ 590 (596)
T KOG1177|consen 585 SKGHLG 590 (596)
T ss_pred HHhhcc
Confidence 986543
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-71 Score=586.69 Aligned_cols=496 Identities=21% Similarity=0.260 Sum_probs=409.7
Q ss_pred HHHHHHHHH-hCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 47 WDVFRMAVE-RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 47 ~~~l~~~a~-~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
++.+.++.. ..+|++|+++. +..+++ +.+||+||++.++++|+.|.+ .|+ +||+|+|++|+.+|.++++|||+
T Consensus 12 ~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~ 86 (528)
T COG0365 12 LNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA 86 (528)
T ss_pred hhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence 345666665 34789999998 444444 899999999999999999997 578 99999999999999999999999
Q ss_pred hcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcC--CCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF--PKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 125 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
++|++++|+.+.++++.+...+++++++++|+++.......... ......+..+++.... . ..|
T Consensus 87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~ 152 (528)
T COG0365 87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWY 152 (528)
T ss_pred HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccH
Confidence 99999999999999999999999999999999987664332211 1110111113333321 1 566
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhh-hhhhccccCCCCcEEEEcCChhhHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC-LLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
.++...... ..+....+++|+++++|||||||.||||+++|..++........ .+ .+.++|++++..++.|..
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~GW~~ 226 (528)
T COG0365 153 DEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDPGWIY 226 (528)
T ss_pred HHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCchhhh
Confidence 666655433 23344489999999999999999999999999987776655443 44 667999999999999999
Q ss_pred HHHH-HHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 282 DRAI-EEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 282 g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
|... ++.+|..|+++++.++ ++..+++.|+++++|.++++|+.++.|.+.-.
T Consensus 227 g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~----------------------- 283 (528)
T COG0365 227 GLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL----------------------- 283 (528)
T ss_pred CchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----------------------
Confidence 9977 8889999999999876 38999999999999999999999999865211
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccc
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~ 436 (663)
.+.+++++||.+.+.|||++++..+++.+.+|++|.+.||+||++++.....+ ...
T Consensus 284 ----------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~--~~~ 339 (528)
T COG0365 284 ----------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP--PVK 339 (528)
T ss_pred ----------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC--CcC
Confidence 22233478999999999999999999999999999999999999966555545 333
Q ss_pred cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC--cccccccCChhhhhccccCCceecCcEEEEcCCCcEEEe
Q 006047 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKII 514 (663)
Q Consensus 437 ~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~--~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~ 514 (663)
+++.|.|+||+++.++| ++++.+ +.++ |+|.++.+ .++++||++++...+.+.++||.|||.+++|+||+++|+
T Consensus 340 ~g~~g~p~pG~~~~vvd-d~g~~~--~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~ 415 (528)
T COG0365 340 NGSSGLPLPGYAVRRVD-DEGNPV--PPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLH 415 (528)
T ss_pred CCCCCCCCCCceeEEEC-CCCCcC--CCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEE
Confidence 46669999999999999 665544 4456 99999986 899999999999998886669999999999999999999
Q ss_pred eeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHH
Q 006047 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKA 591 (663)
Q Consensus 515 GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (663)
||.||+|++ .|+++.|.|||++|.+||.|.||+|||.+|+ +.++|||+++++. .+.
T Consensus 416 GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~-------------------~~~- 474 (528)
T COG0365 416 GRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGV-------------------EPN- 474 (528)
T ss_pred eeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCC-------------------ChH-
Confidence 999999997 7999999999999999999999999999875 5799999999864 111
Q ss_pred HHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 592 KEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 592 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.+.++|+++.+ +.+.++..|+.|.++++. |+|.+|||.|+.||+.+.+
T Consensus 475 --~L~~ei~~~vr-~~~~~~~~p~~i~fv~~L------PkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 475 --ELAEEIRRHVA-RNIGPHAIPRKIRFVDEL------PKTASGKIQRRLLRKILHK 522 (528)
T ss_pred --HHHHHHHHHHH-hccCcccCCceEEEecCC------CCCCcccHHHHHHHHHHhh
Confidence 56677777776 455569999999999776 8999999999999998875
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-70 Score=600.93 Aligned_cols=506 Identities=26% Similarity=0.394 Sum_probs=419.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
..+.++.++|.++++.+|+++|+++. +... ++||+||.++++++|.+|++.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45688999999999999999999987 4321 5999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE-
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV- 199 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~- 199 (663)
|||+++|++++|+||.+..+++.++++.++++++++++............. +....+........ ..
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~ 148 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PVVLVVLLVGDADD-----------RLP 148 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-CcceEEEecccccc-----------ccc
Confidence 999999999999999999999999999999999999988444433333222 22223322222110 00
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhcccc--CCCCcEEEEcCCh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK--LTSEDVYVSYLPL 277 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~--~~~~d~~~~~~p~ 277 (663)
.++.+...............+++++++++|||||||.||||++||++++.+...+...+ . ++..|++++++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl 223 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL 223 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence 23455533332222222336789999999999999999999999999999988887777 5 8899999999999
Q ss_pred hhHHHHHHHHH-HHHcCcEEEEEc---CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006047 278 AHIFDRAIEEV-FISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (663)
Q Consensus 278 ~~~~g~~~~~~-~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (663)
+|.+|+...+. .++.|+++++.+ .++..++..+.++++|+++++|+++..++.+.....
T Consensus 224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~----------------- 286 (534)
T COG0318 224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD----------------- 286 (534)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------
Confidence 99999987555 599999999987 389999999999999999999999999876322110
Q ss_pred hHhhhhcCCCCCCcchhhHHHhHHHHHHHcCC-ceEEEEecCCCCcHHHHHHHHHhcC-CceeecccccccccceeccCC
Q 006047 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGG-RVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLP 431 (663)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~ 431 (663)
..+ + ++|.+++||+++++++.+++++.++ ..+++.||+||++..++....
T Consensus 287 --------------------~~~--------~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 338 (534)
T COG0318 287 --------------------DDL--------SSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPP 338 (534)
T ss_pred --------------------ccc--------ccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCC
Confidence 000 2 3999999999999999999999887 479999999999988777776
Q ss_pred CC-ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccC-CceecCcEEEEcCCC
Q 006047 432 NE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGDIGEWQPDG 509 (663)
Q Consensus 432 ~~-~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G 509 (663)
.. ....+++|.|+|+++++|+| +++. .+.+ |+.|||+++||+++.||+++|+.|.+.|.+ |||+|||+|++|++|
T Consensus 339 ~~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G 415 (534)
T COG0318 339 DDLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDG 415 (534)
T ss_pred chhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCc
Confidence 66 23457789999999999999 5554 3333 789999999999999999999999998865 999999999999999
Q ss_pred cEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhh
Q 006047 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLC 586 (663)
Q Consensus 510 ~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 586 (663)
++++.||.+|+|+. +|++|+|.|||+++.+||.|.+|+|+|.+++ +.++|+|+++++..
T Consensus 416 ~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~----------------- 477 (534)
T COG0318 416 YLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD----------------- 477 (534)
T ss_pred cEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC-----------------
Confidence 99999999999995 9999999999999999999999999998865 79999999987420
Q ss_pred cChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 587 ENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 587 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
. ....++|.++++ ..++.+++|+.|.+++.. |+|++||++|+.|++.+.+
T Consensus 478 -~----~~~~~~i~~~~~-~~l~~~~~P~~v~~v~~l------P~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 478 -A----ELTAEELRAFLR-KRLALYKVPRIVVFVDEL------PRTASGKIDRRALREEYRA 527 (534)
T ss_pred -C----CCCHHHHHHHHH-hhhhcccCCeEEEEeCCC------CCCCchhhhHHHHHHHHHh
Confidence 0 002344455555 588999999999999665 8999999999999999987
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-67 Score=590.00 Aligned_cols=542 Identities=20% Similarity=0.292 Sum_probs=430.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.+++..+|+++|++.. + ..+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 113 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA 113 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 478999999999999999999864 2 233467899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCC-----hHHHHHHHhhcCccEEEEcCCC-hhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 123 CNALGLHCVPLYDTLG-----AGAVEFIICHSGVSIAFVEEKK-IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~-----~~~l~~~l~~~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
|+++|++++|+++.++ .+++.++++.++++++|+++.. ......... .....++....... .
T Consensus 114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~---------~ 181 (614)
T PRK08180 114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV---PADVEVVAVRGAVP---------G 181 (614)
T ss_pred HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc---cCCceEEEecCCCC---------C
Confidence 9999999999999998 7899999999999999997642 111111111 11122333322100 0
Q ss_pred cEEEeHHHHHhcccccC--CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCC--CCcEEE
Q 006047 197 LAVYSWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT--SEDVYV 272 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~~ 272 (663)
....++++++....... .......++++++++|||||||.||||++||+++...+......+ ... .+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l 256 (614)
T PRK08180 182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV 256 (614)
T ss_pred cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence 11245666654322111 112234679999999999999999999999999998887766554 332 568999
Q ss_pred EcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHH
Q 006047 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (663)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (663)
+++|++|.+|+.. ++.+++.|+++++.+. +...+++.++++++|+++++|.++..|++.+....
T Consensus 257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~---------- 326 (614)
T PRK08180 257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA---------- 326 (614)
T ss_pred EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch----------
Confidence 9999999999865 6678999999998763 34578889999999999999999999876543210
Q ss_pred HHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHh----cC--Cceeeccccc
Q 006047 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC--AHVLQGYGLT 420 (663)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~--~~v~~~yG~t 420 (663)
......++++|.+++||+++++++.+.+++. +| .++++.||+|
T Consensus 327 -------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T 375 (614)
T PRK08180 327 -------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT 375 (614)
T ss_pred -------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence 0111223689999999999999999998874 33 6799999999
Q ss_pred ccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceec
Q 006047 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499 (663)
Q Consensus 421 E~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~T 499 (663)
|++.++....... ...+++|+|++++++++++ + +..|||+++|++++.||+++++.+.+.| .+|||+|
T Consensus 376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T 444 (614)
T PRK08180 376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444 (614)
T ss_pred ccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence 9987665443332 3458999999999999988 2 2469999999999999999999999988 6899999
Q ss_pred CcEEEE----cCCCcEEEeeeccceeecCCCceec--cHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHH
Q 006047 500 GDIGEW----QPDGSLKIIDRKKNIFKLSQGEYVA--VENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWA 573 (663)
Q Consensus 500 GDlg~~----~~~G~l~~~GR~~d~i~i~~G~~v~--~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~ 573 (663)
||+|++ |++|+|+++||.+|+|++++|++++ |.|+|.++.+||.|++|+|+|.++ +.++|+|+++++....+.
T Consensus 445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~ 523 (614)
T PRK08180 445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLA 523 (614)
T ss_pred cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHH
Confidence 999999 4689999999999999877899777 778889999999999999999884 568899999987655444
Q ss_pred HHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHH
Q 006047 574 AENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLV 653 (663)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~ 653 (663)
... ...+..+.+..+++.+.+++.|.++.. ...+.+.+|+++.+++++|..+.+..|++||++|+++.+.|++.|+++
T Consensus 524 ~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~l 601 (614)
T PRK08180 524 GLL-ADASLAEVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEAL 601 (614)
T ss_pred hhc-ccCCHHHHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHH
Confidence 333 122233445677889999999998887 344456699999999888888889999999999999999999999999
Q ss_pred hccccCC
Q 006047 654 FSEYSLD 660 (663)
Q Consensus 654 ~~~~~~~ 660 (663)
|.+...+
T Consensus 602 Y~~~~~~ 608 (614)
T PRK08180 602 YADEPDD 608 (614)
T ss_pred hCCCCCC
Confidence 9976543
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-66 Score=586.42 Aligned_cols=542 Identities=21% Similarity=0.284 Sum_probs=429.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|+++++.+||++|++.. +...+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 122 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT 122 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 45678999999999999999999865 332345688999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCCh-----HHHHHHHhhcCccEEEEcCCC-hhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhh
Q 006047 121 EACNALGLHCVPLYDTLGA-----GAVEFIICHSGVSIAFVEEKK-IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~-----~~l~~~l~~~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 194 (663)
|||+++|++++|++|.++. +++.++++.++++++|+++.. .......... ... .++.+.....
T Consensus 123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~-------- 191 (624)
T PRK12582 123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL--LDV-TVVHVTGPGE-------- 191 (624)
T ss_pred HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh--cCc-eEEEEcCCCc--------
Confidence 9999999999999999885 899999999999999998642 1222222211 122 2333332110
Q ss_pred cCcEEEeHHHHHhcccccC--CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCC---CCc
Q 006047 195 YGLAVYSWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT---SED 269 (663)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~---~~d 269 (663)
.....++.++........ .......++++++++|||||||.||||.+||+++..........+ ... .++
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~ 265 (624)
T PRK12582 192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPP 265 (624)
T ss_pred -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCc
Confidence 111234555554322111 111234678999999999999999999999999998876654433 222 358
Q ss_pred EEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--C---HHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhH
Q 006047 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (663)
Q Consensus 270 ~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (663)
+++.++|++|.+|+.. ++.+++.|+++++.+. . ...+++.++++++|+++++|.++..|.+.+...
T Consensus 266 ~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~-------- 337 (624)
T PRK12582 266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKD-------- 337 (624)
T ss_pred eEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhC--------
Confidence 9999999999999866 5667999999998753 2 345677889999999999999999886543221
Q ss_pred HHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc------CCceeecc
Q 006047 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA------CAHVLQGY 417 (663)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~------~~~v~~~y 417 (663)
+.. ....+++||.+++||+++++++.+++++.+ +.++++.|
T Consensus 338 -------------------------~~~--------~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y 384 (624)
T PRK12582 338 -------------------------DAL--------RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY 384 (624)
T ss_pred -------------------------HHH--------HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence 000 111225899999999999999999998753 36799999
Q ss_pred cccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCc
Q 006047 418 GLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496 (663)
Q Consensus 418 G~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~ 496 (663)
|+||++.++....... ...+++|+|+||+++++++ .|+.|||+|+|++++.||+++++.+.+.| .+||
T Consensus 385 G~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw 453 (624)
T PRK12582 385 GATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGF 453 (624)
T ss_pred ccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCceEEEEECCcccccccCCccchhhhcCccCC
Confidence 9999987655332222 3357999999999999975 35789999999999999999999999888 6899
Q ss_pred eecCcEEEE-c---CCCcEEEeeeccceeecCCCceeccHHHH--HHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHH
Q 006047 497 FHTGDIGEW-Q---PDGSLKIIDRKKNIFKLSQGEYVAVENLE--NIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALE 570 (663)
Q Consensus 497 ~~TGDlg~~-~---~~G~l~~~GR~~d~i~i~~G~~v~~~~IE--~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~ 570 (663)
|+|||+|++ | ++|+|++.||.+|+|++++|++|+|.+|| .++.+||.|.+|+|+|.+ .+.+.++|+++.....
T Consensus 454 ~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g~lv~p~~~~~~ 532 (624)
T PRK12582 454 YRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIGLLAWPNPAACR 532 (624)
T ss_pred ccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEEEEEecCHHHHH
Confidence 999999998 4 46999999999999998889999998885 678999999999999986 6678899999887754
Q ss_pred HHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCcc-ceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 571 RWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFE-FIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~-~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.+....+ .+..+.+.++++.+.+++.|.++++ .++.+. +|+++.+++++|..+.+++|++||++|+.+.++|++.
T Consensus 533 ~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~ 608 (624)
T PRK12582 533 QLAGDPD--AAPEDVVKHPAVLAILREGLSAHNA--EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAAL 608 (624)
T ss_pred HHHhcCC--CCHHHHhcCHHHHHHHHHHHHHHHh--hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHH
Confidence 4433221 1234456778899999999999987 688888 9999999999998889999999999999999999999
Q ss_pred HHHHhccccC
Q 006047 650 FLLVFSEYSL 659 (663)
Q Consensus 650 ~~~~~~~~~~ 659 (663)
|+++|.+...
T Consensus 609 i~~ly~~~~~ 618 (624)
T PRK12582 609 VERLYAEPPG 618 (624)
T ss_pred HHHHhcCCCC
Confidence 9999997644
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=595.30 Aligned_cols=529 Identities=16% Similarity=0.206 Sum_probs=406.7
Q ss_pred CCCHHHHHHHHHHh--CCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 43 MESCWDVFRMAVER--NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 43 ~~~l~~~l~~~a~~--~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
.+...++|+++++. +|+++|+++. ...++..+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 58 ~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~ 134 (647)
T PTZ00237 58 LNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAM 134 (647)
T ss_pred eeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45678888888764 7999999875 322333478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCC---------hhhHhhcCCCcCCCCcEEEEecCCC---hhh
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK---------IPEMLKTFPKTTEHLKTIVSFSKVK---PEQ 188 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~ii~~~~~~---~~~ 188 (663)
|||+++|++++|+++.++.+++.++|++++++++|+++.. .+.+.+..........+++.+.... ...
T Consensus 135 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 214 (647)
T PTZ00237 135 LSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESD 214 (647)
T ss_pred HHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccc
Confidence 9999999999999999999999999999999999997631 1222222211111234555442110 000
Q ss_pred HHHHh--hcCcEEEeHHHHHhccc----ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHH-HHHHHhhhhhhhhhc
Q 006047 189 REEIE--KYGLAVYSWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLESV 261 (663)
Q Consensus 189 ~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~-l~~~~~~~~~~~~~~ 261 (663)
...+. ........|++++.... ..........++++++++|||||||.||||+++|.+ +.+........+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~--- 291 (647)
T PTZ00237 215 LKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII--- 291 (647)
T ss_pred cccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc---
Confidence 00000 00001245666654321 111223445789999999999999999999999998 444332223223
Q ss_pred cccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCC-------HHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHH
Q 006047 262 NEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGD-------VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334 (663)
Q Consensus 262 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~-------~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 334 (663)
....++++++..|++|..+...++.+++.|+++++.+++ +..+++.|+++++|+++++|+.++.+.+....
T Consensus 292 --~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 369 (647)
T PTZ00237 292 --EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE 369 (647)
T ss_pred --CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence 566789999999999987666678889999999998752 67899999999999999999999988653111
Q ss_pred HHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCcee
Q 006047 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414 (663)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~ 414 (663)
... ......+++||.+++||+++++++.+++++.+|++++
T Consensus 370 ~~~----------------------------------------~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~ 409 (647)
T PTZ00237 370 ATI----------------------------------------IRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSS 409 (647)
T ss_pred ccc----------------------------------------cccccCcchheEEEecCccCCHHHHHHHHHhcCCCEE
Confidence 000 0001112589999999999999999999998999999
Q ss_pred ecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC---cccccccCChhhhhcc
Q 006047 415 QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEV 491 (663)
Q Consensus 415 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~ 491 (663)
+.||+||+++.+...........+++|.|+|+++++|+| +++.. ++.|+.|||++++| .++.|||++++.+.+.
T Consensus 410 ~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~--~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~ 486 (647)
T PTZ00237 410 RGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKE--LNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQL 486 (647)
T ss_pred eeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCC--CCCCCceEEEEeccCCchhhCceeCCHHHHHHH
Confidence 999999998655443332222237899999999999999 66654 45679999999986 7899999999998887
Q ss_pred cc--CCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecCh
Q 006047 492 MV--DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNK 566 (663)
Q Consensus 492 ~~--~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~ 566 (663)
|. +|||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||.|.+|+|+|.+++ +.++|+|++++
T Consensus 487 f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~ 565 (647)
T PTZ00237 487 FSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQ 565 (647)
T ss_pred HhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEecc
Confidence 73 799999999999999999999999999996 8999999999999999999999999998864 68999999885
Q ss_pred HHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 567 DALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
+.. ......+.+.++|+++++ .+|+++++|+.|++++.. |+|++||++|+.|++++
T Consensus 566 ~~~-----------------~~~~~~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~Lr~~~ 621 (647)
T PTZ00237 566 DQS-----------------NQSIDLNKLKNEINNIIT-QDIESLAVLRKIIIVNQL------PKTKTGKIPRQIISKFL 621 (647)
T ss_pred Ccc-----------------ccCCCHHHHHHHHHHHHH-hhcCccccCcEEEEcCCC------CCCCCccEeHHHHHHHH
Confidence 320 000012345667777777 689999999999999776 79999999999999886
Q ss_pred H
Q 006047 647 Q 647 (663)
Q Consensus 647 ~ 647 (663)
.
T Consensus 622 ~ 622 (647)
T PTZ00237 622 N 622 (647)
T ss_pred c
Confidence 4
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=586.67 Aligned_cols=521 Identities=18% Similarity=0.222 Sum_probs=405.1
Q ss_pred CCHHHHHHHHHH-hCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESCWDVFRMAVE-RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l~~~l~~~a~-~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+...++|.+++. .+|+++|+++. ....+..+.+||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus 88 N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA 164 (666)
T PLN02654 88 NICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA 164 (666)
T ss_pred eHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 344778887775 48999999875 33334457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhh---------HhhcCCCc---CCCCcEEEEecCCChhhHH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE---------MLKTFPKT---TEHLKTIVSFSKVKPEQRE 190 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~---------~~~~~~~~---~~~~~~ii~~~~~~~~~~~ 190 (663)
|+++|++++|+++.++.+++..+|++++++++|+++..... +....... ......++..+........
T Consensus 165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
T PLN02654 165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE 244 (666)
T ss_pred HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence 99999999999999999999999999999999998764321 11100000 0111223332221100000
Q ss_pred HHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHH-hhhhhhhhhccccCCCCc
Q 006047 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI-AGVKCLLESVNEKLTSED 269 (663)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~-~~~~~~~~~~~~~~~~~d 269 (663)
...........|+++....+ ...+.....++++++++|||||||.||||+++|.+++... ..+...+ +++++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~d 318 (666)
T PLN02654 245 DTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPTD 318 (666)
T ss_pred ccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCCc
Confidence 00000001123445443221 1122334578999999999999999999999999976543 3444444 788999
Q ss_pred EEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhH
Q 006047 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (663)
Q Consensus 270 ~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (663)
++++..|++|..|... ++.+++.|++++++++ ++..+++.|+++++|+++++|++++.|.+......
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------- 391 (666)
T PLN02654 319 VYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV------- 391 (666)
T ss_pred EEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc-------
Confidence 9999999999998765 6778999999999864 68999999999999999999999998865311000
Q ss_pred HHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeeccccc
Q 006047 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLT 420 (663)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~t 420 (663)
. ...+++||.++++|+++++++.+++.+.+| +++.+.||+|
T Consensus 392 ----------------------------~--------~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~T 435 (666)
T PLN02654 392 ----------------------------T--------RHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT 435 (666)
T ss_pred ----------------------------c--------cCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccc
Confidence 0 011158999999999999999999998887 6899999999
Q ss_pred ccccceeccCCCC-ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cC
Q 006047 421 ETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VD 494 (663)
Q Consensus 421 E~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~ 494 (663)
|+++......+.. ...++++|.|++|++++|+| +++..+ +.++.|||++++ |.++.|||++++.+.+.+ .+
T Consensus 436 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~--~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~ 512 (666)
T PLN02654 436 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEI--EGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFA 512 (666)
T ss_pred ccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCC--CCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCC
Confidence 9987665544322 23458899999999999999 666544 456789999999 789999999998887665 37
Q ss_pred CceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHH
Q 006047 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALER 571 (663)
Q Consensus 495 g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~ 571 (663)
|||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++.++.
T Consensus 513 g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~--- 588 (666)
T PLN02654 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGV--- 588 (666)
T ss_pred CEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCC---
Confidence 99999999999999999999999999996 8999999999999999999999999998764 5899999988642
Q ss_pred HHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 572 WAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
. .. +.+.++|+++++ .+|++++.|+.|++++.. |+|.+||++|+.|++.+..
T Consensus 589 -------~-------~~----~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 589 -------P-------YS----EELRKSLILTVR-NQIGAFAAPDKIHWAPGL------PKTRSGKIMRRILRKIASR 640 (666)
T ss_pred -------C-------CC----HHHHHHHHHHHH-HhCCCCcCCCEEEECCCC------CCCCCcCchHHHHHHHHcC
Confidence 0 01 234455666666 789999999999999665 7999999999999988753
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=579.12 Aligned_cols=526 Identities=21% Similarity=0.231 Sum_probs=407.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.-++.++|.+.++++|+++|++.. + +.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++||
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la 76 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA 76 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 367999999999999999999753 2 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++.++++.++++++++++..............+.++.++............. ....+.
T Consensus 77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~ 152 (563)
T PLN02860 77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFL----NSFLTT 152 (563)
T ss_pred HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccch----hhcccc
Confidence 9999999999999999999999999999999999876533222221111233344444432210000000 001111
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
+++...............++++++++|||||||.||+|.++|+++..+.......+ ++.++|+++..+|++|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g 227 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGG 227 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhcc
Confidence 22211110111111234678999999999999999999999999988776655555 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcC
Q 006047 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (663)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.......
T Consensus 228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------ 283 (563)
T PLN02860 228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT------------------------ 283 (563)
T ss_pred HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc------------------------
Confidence 8878888999999988775 999999999999999999999999988753211100
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC-------
Q 006047 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE------- 433 (663)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~------- 433 (663)
....+++|.+++||+++++.+.+.+++.+ +.++++.||+||++..+.......
T Consensus 284 -------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 344 (563)
T PLN02860 284 -------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344 (563)
T ss_pred -------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence 01115899999999999999999999888 789999999999976544322111
Q ss_pred ---------------ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCce
Q 006047 434 ---------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (663)
Q Consensus 434 ---------------~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~ 497 (663)
.....++|+|+++++++|++ ++ .|+.|||+++|+.++.||+++++.+.+.+ .+|||
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 416 (563)
T PLN02860 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL 416 (563)
T ss_pred hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence 01123689999999999998 43 46899999999999999999999998887 68999
Q ss_pred ecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHH
Q 006047 498 HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAA 574 (663)
Q Consensus 498 ~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~ 574 (663)
+|||+|++|+||++++.||.+|+|++ +|++|+|.+||+++.+||+|.+|+|++.+++ +.++|+|++.++....
T Consensus 417 ~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--- 492 (563)
T PLN02860 417 DTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWS--- 492 (563)
T ss_pred EccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccc---
Confidence 99999999999999999999999996 8999999999999999999999999997754 6899999987642000
Q ss_pred HcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHH
Q 006047 575 ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLV 653 (663)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~ 653 (663)
... ...... ......+.|++++.+..|++|++|+.++++.+.| |+|++||++|++|++++.+.+..+
T Consensus 493 ----~~~-~~~~~~--~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~l-----P~t~~GKi~r~~L~~~~~~~~~~~ 559 (563)
T PLN02860 493 ----DNE-KENAKK--NLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPF-----PLTTTGKIRRDEVRREVLSHLQSL 559 (563)
T ss_pred ----ccc-chhhcc--cccccHHHHHHHHhhCcccccccceEEEEEecCC-----CCCcccchhHHHHHHHHHHHHhcc
Confidence 000 000000 0011235677777644699999999988763322 799999999999999988776654
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=575.91 Aligned_cols=519 Identities=21% Similarity=0.243 Sum_probs=409.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..|++++|.+.++.+|+++|+++... ++.....+++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA 102 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG 102 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 45799999999999999999987511 11122347899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh-----hhHhhcCCCcCCCCcEEEEecCCChhh--HHHH---
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQ--REEI--- 192 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~~~~~--~~~~--- 192 (663)
|+++| +++|+++.++.+++.++++.++++++|+++... ..+...... .+.++.++.++...... ..+.
T Consensus 103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAA-LPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhc-CCcceeEEEecCcccccccccccccc
Confidence 99999 568999999999999999999999999986542 222222222 24556666654321100 0000
Q ss_pred -h-hcCcEEEeHHHHHhcccccC-CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCc
Q 006047 193 -E-KYGLAVYSWDEFLQLGENKQ-FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED 269 (663)
Q Consensus 193 -~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d 269 (663)
. ..+....++.+.+...+... .......++++++++|||||||.||+|.+||+++++.+......+ .+.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d 255 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGD 255 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCC
Confidence 0 01223445666665443222 122334679999999999999999999999999998887766655 678999
Q ss_pred EEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC----C---HHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCCh
Q 006047 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG----D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341 (663)
Q Consensus 270 ~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~ 341 (663)
++++.+|++|.+++.. ++.++..|+++++.+. + ...+++.++++++|++.++|+++..+++....
T Consensus 256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------- 328 (632)
T PRK07529 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD------- 328 (632)
T ss_pred EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------
Confidence 9999999999999875 6778999999998753 2 36788999999999999999999987642100
Q ss_pred hHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccc
Q 006047 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421 (663)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE 421 (663)
....+++|.+++||+++++++.+.+++.+++++++.||+||
T Consensus 329 ---------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE 369 (632)
T PRK07529 329 ---------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE 369 (632)
T ss_pred ---------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccc
Confidence 00115899999999999999999999989999999999999
Q ss_pred cccceeccCCCCccccCccCccccCeEEEEeecCCCc--cccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCcee
Q 006047 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME--YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498 (663)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~ 498 (663)
++.++...........+++|.|+|+++++++..++.. ..+++.|+.|||+|+|++++.||++++. +...| .+|||+
T Consensus 370 ~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~ 448 (632)
T PRK07529 370 ATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLN 448 (632)
T ss_pred cCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceE
Confidence 9877766654444455899999999999997533322 1566778999999999999999998654 44444 789999
Q ss_pred cCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHH
Q 006047 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAE 575 (663)
Q Consensus 499 TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~ 575 (663)
|||+|++|+||++++.||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++. +.++|+|++.++.
T Consensus 449 TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~------- 520 (632)
T PRK07529 449 TGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGA------- 520 (632)
T ss_pred cCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCC-------
Confidence 9999999999999999999999995 8999999999999999999999999997654 6899999987642
Q ss_pred cCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCC-CccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 576 NGVNGDFKSLCENPKAKEFILGELSRVAKEKKLK-GFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~-~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. -.++|+++++ ..++ .+++|+.|.+++.. |+|++||++|++|++.+..
T Consensus 521 -----------~~------~~~~l~~~~~-~~l~~~~~~P~~i~~v~~l------P~t~~GKi~r~~Lr~~~~~ 570 (632)
T PRK07529 521 -----------SA------TEAELLAFAR-DHIAERAAVPKHVRILDAL------PKTAVGKIFKPALRRDAIR 570 (632)
T ss_pred -----------CC------CHHHHHHHHH-HhcchhccCCcEEEEecCC------CCCCCCcccHHHHHHHHHH
Confidence 00 0134445555 4554 57899999999665 8999999999999988754
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=578.19 Aligned_cols=524 Identities=14% Similarity=0.152 Sum_probs=407.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.+.+.++|.+++..+|+++|+++. +...+..+.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++||
T Consensus 51 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA 127 (628)
T TIGR02316 51 TNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLA 127 (628)
T ss_pred eeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 345678898888899999999875 33334457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh---------hhHhhcCCCcCCCCcEEEEecCCChhhHHHHh
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 193 (663)
|+++|++++|+++.++.+++.++|+.++++++|+++... ..+.+...........++.++...... .
T Consensus 128 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~ 203 (628)
T TIGR02316 128 CARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----R 203 (628)
T ss_pred HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence 999999999999999999999999999999999987532 111111111112345666665321100 0
Q ss_pred hcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHH-HhhhhhhhhhccccCCCCcEEE
Q 006047 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF-IAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
.......++.++.........+.....++++++++|||||||.||||+++|.+++.. .......+ +++++|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 278 (628)
T TIGR02316 204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVMF 278 (628)
T ss_pred cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 000012345665543322122223356799999999999999999999999997644 33344444 678999999
Q ss_pred EcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHH
Q 006047 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (663)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (663)
+..|++|..++.. ++.+++.|+++++.++ ++..+++.|+++++|+++++|+.++.|.+.....
T Consensus 279 ~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------- 347 (628)
T TIGR02316 279 SASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW----------- 347 (628)
T ss_pred EcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc-----------
Confidence 9999999988754 7788999999999863 6889999999999999999999998875421000
Q ss_pred HHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccce
Q 006047 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT 426 (663)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 426 (663)
.....+++||.+++||+++++++.+++++.++..+++.||+||++..+
T Consensus 348 --------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~ 395 (628)
T TIGR02316 348 --------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPV 395 (628)
T ss_pred --------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCcee
Confidence 001122689999999999999999999998899999999999998644
Q ss_pred eccCCCC---ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC---cccccccCChhhhhccc----cCCc
Q 006047 427 FVSLPNE---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVM----VDGW 496 (663)
Q Consensus 427 ~~~~~~~---~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~----~~g~ 496 (663)
+...... ....+++|.|+++++++|+|..++. +++.|+.|||+++|| ..+.||+++++.+.+.+ .++|
T Consensus 396 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~--~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 473 (628)
T TIGR02316 396 LAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGR--PCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPL 473 (628)
T ss_pred ecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCC--CCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCE
Confidence 4332221 2234789999999999999922454 445679999999998 46789999887766543 5679
Q ss_pred eecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHH
Q 006047 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWA 573 (663)
Q Consensus 497 ~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~ 573 (663)
|+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++++|++.++..
T Consensus 474 ~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~---- 548 (628)
T TIGR02316 474 YSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDS---- 548 (628)
T ss_pred EECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcc----
Confidence 999999999999999999999999997 8999999999999999999999999998764 58899998875320
Q ss_pred HHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 574 AENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
. .+....+.+.++|+++++ .+|++|++|+.|++++.. |+|++||++|+.|++.+.
T Consensus 549 ----~--------~~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~~l------P~t~sGKi~r~~L~~~~~ 603 (628)
T TIGR02316 549 ----A--------GDAHDPHAVETGMMDCVV-RQLGAVARPARVYFVAAL------PKTRSGKLLRRSIQALAE 603 (628)
T ss_pred ----c--------ccccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcCCC------CCCCchHHHHHHHHHHHc
Confidence 0 000112234566777777 789999999999999765 799999999999998764
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=573.21 Aligned_cols=497 Identities=20% Similarity=0.220 Sum_probs=406.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+.++.++|.++++.+||++|++.. + +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 48 ~~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la 118 (549)
T PRK07788 48 YGPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYA 118 (549)
T ss_pred hchHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 358999999999999999999854 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++..+++.++++++|++++....+..... ....+..++....... ....++.++
T Consensus 119 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~ 190 (549)
T PRK07788 119 AGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPP-DLGRLRAWGGNPDDDE-------PSGSTDETL 190 (549)
T ss_pred HHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhcc-ccccceEEEEecCccc-------cCCcCcccH
Confidence 99999999999999999999999999999999999876665544321 1123333332221110 011234567
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
+++...... .......++.++++|||||||.||+|.++|.++.+.+......+ ++..++++++..|++|.+|
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g 262 (549)
T PRK07788 191 DDLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATG 262 (549)
T ss_pred HHHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHH
Confidence 777654322 12223457889999999999999999999999999887766655 6788999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcC
Q 006047 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (663)
+..++.++..|+++++... ++..+++.++++++|+++++|+++..+++.......
T Consensus 263 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------ 318 (549)
T PRK07788 263 WAHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA------------------------ 318 (549)
T ss_pred HHHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC------------------------
Confidence 9877888999999988765 999999999999999999999999988653221000
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccC
Q 006047 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441 (663)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G 441 (663)
....+++|.+++||+++++++.+.+++.++..+++.||+||++..+............++|
T Consensus 319 -------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG 379 (549)
T PRK07788 319 -------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVG 379 (549)
T ss_pred -------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcc
Confidence 0112589999999999999999999998999999999999998665544333233457899
Q ss_pred ccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeecccee
Q 006047 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521 (663)
Q Consensus 442 ~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i 521 (663)
.|+++++++++| +++.. ++.|+.|||+++|+.++.||++++.. ...+|||+|||+|++|++|++++.||.+|+|
T Consensus 380 ~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i 453 (549)
T PRK07788 380 RPPKGVTVKILD-ENGNE--VPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI 453 (549)
T ss_pred cCCCCcEEEEEC-CCcCC--CCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceE
Confidence 999999999999 66654 45579999999999999999988765 2358999999999999999999999999999
Q ss_pred ecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHH
Q 006047 522 KLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGE 598 (663)
Q Consensus 522 ~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 598 (663)
++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .. ..++
T Consensus 454 ~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~------------------~~------~~~~ 508 (549)
T PRK07788 454 VS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA------------------AL------DEDA 508 (549)
T ss_pred EE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC------------------CC------CHHH
Confidence 96 8999999999999999999999999997754 5789999987632 00 0234
Q ss_pred HHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 599 LSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 599 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
|+++++ ..|++|++|++|++++.. |+|++||++|++|+++
T Consensus 509 l~~~~~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 509 IKDYVR-DNLARYKVPRDVVFLDEL------PRNPTGKVLKRELREM 548 (549)
T ss_pred HHHHHH-HhhhcCCCCcEEEEeCCC------CCCCCcCEeHHHhhcc
Confidence 555555 678999999999999665 8999999999999763
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-65 Score=565.76 Aligned_cols=499 Identities=21% Similarity=0.220 Sum_probs=392.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.+.|.+.++++|+++|+... +. +++||+||.++++++|++|.+. +||+|+++++|++++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999998654 21 3599999999999999999873 89999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++.++|+.+++++++++.+....+.+...........++.++.... ...
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK------------ELS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh------------hcc
Confidence 99999999999999999999999999999999999876555443322110000113333322100 000
Q ss_pred HHHHHhcc-----cc----cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 006047 202 WDEFLQLG-----EN----KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 202 ~~~~~~~~-----~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
+.+..... .. .........++++++++|||||||.||+|.+||+++..........+ ..+.+|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l 228 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMM 228 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEE
Confidence 11110000 00 00112345679999999999999999999999999998877766655 678899999
Q ss_pred EcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 006047 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (663)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (663)
+.+|++|.+|+.. .+.++..|+++++... ++..+++.|+++++|+++++|+++..+++......
T Consensus 229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------- 295 (539)
T PRK06334 229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE------------- 295 (539)
T ss_pred EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-------------
Confidence 9999999999865 6778999999988753 89999999999999999999999999876322110
Q ss_pred HHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceec
Q 006047 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFV 428 (663)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~ 428 (663)
...+++|.+++||+++++++.+++++.+ +..+++.||+||++.++..
T Consensus 296 --------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 343 (539)
T PRK06334 296 --------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI 343 (539)
T ss_pred --------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence 1115899999999999999999999887 6899999999999877665
Q ss_pred cCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc--cCCceecCcEEEEc
Q 006047 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDGWFHTGDIGEWQ 506 (663)
Q Consensus 429 ~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~g~~~TGDlg~~~ 506 (663)
..........++|+|+++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.... .+|||+|||+|++|
T Consensus 344 ~~~~~~~~~~~vG~p~~g~~v~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d 421 (539)
T PRK06334 344 NTVNSPKHESCVGMPIRGMDVLIVS-EET-KVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVD 421 (539)
T ss_pred ccCCCCCCCCcCceecCCCEEEEEc-CCC-CccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEEC
Confidence 5443333346799999999999998 432 2466778999999999999999999988654332 36799999999999
Q ss_pred CCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcce------EEEEeeCCCC-eEEEEEecChHHHHHHHHHcCCC
Q 006047 507 PDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDS------VWVYGNSFES-FLVAIVNPNKDALERWAAENGVN 579 (663)
Q Consensus 507 ~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~------~~v~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~ 579 (663)
++|++++.||.+|+|++ +|++|+|.|||++|.+||+|.+ ++|++.+++. .++++++...
T Consensus 422 ~~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 487 (539)
T PRK06334 422 RHGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPT------------- 487 (539)
T ss_pred CCCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccC-------------
Confidence 99999999999999996 8999999999999999999998 7888887654 4455554321
Q ss_pred CChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 580 GDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
. .+++++++++..++.|+.|+.+.+++.. |+|++||++|+.|++....++
T Consensus 488 -------~--------~~~~~~~l~~~~~~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~ 537 (539)
T PRK06334 488 -------S--------ISEVNDILKNSKTSSILKISYHHQVESI------PMLGTGKPDYCSLNALAKSLF 537 (539)
T ss_pred -------C--------hHHHHHHHHhcCCcccccchheeeeccc------ccccCCcccHHHHHHHHHHhh
Confidence 0 1345555554457899999999988665 899999999999998866543
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-65 Score=577.71 Aligned_cols=517 Identities=19% Similarity=0.246 Sum_probs=410.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
+..+++|.++++.+|+++|+++. +...++.+.+||+||.+++.++|++|++.|+++||+|+++++|++++++++|||
T Consensus 57 n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 133 (625)
T TIGR02188 57 NVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133 (625)
T ss_pred EHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 45778888888899999999986 332445688999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh---------hhHhhcCCCcCC-CCcEEEEecCCChhhHHHHh
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIE 193 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~ 193 (663)
+++|++++|+++.++.+++.++++.++++++|+++... ..+.+..... + .++.++.++...... .+
T Consensus 134 ~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-- 209 (625)
T TIGR02188 134 ARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKC-PVSVEHVLVVRRTGNPV-PW-- 209 (625)
T ss_pred HHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhC-CCCccEEEEEcCCCCCc-Cc--
Confidence 99999999999999999999999999999999987532 1121211111 2 455566654321100 00
Q ss_pred hcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 006047 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~ 272 (663)
.......+++++..... ...+....++++++++|||||||.||||+++|.+++..... ....+ ++.++|+++
T Consensus 210 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~ 282 (625)
T TIGR02188 210 -VEGRDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIFW 282 (625)
T ss_pred -cccccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEEE
Confidence 00112345555543221 22334567789999999999999999999999998755433 22233 678899999
Q ss_pred EcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHH
Q 006047 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (663)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (663)
+..|++|..+... ++.++..|+++++.++ ++..+++.|+++++|+++++|++++.+.+......
T Consensus 283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------- 352 (625)
T TIGR02188 283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV---------- 352 (625)
T ss_pred ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc----------
Confidence 9999999988754 7788999999998753 68999999999999999999999998865321100
Q ss_pred HHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeecccccccc
Q 006047 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETC 423 (663)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~ 423 (663)
+...+++||.+++||+++++++.+++.+.++ +++++.||+||++
T Consensus 353 ---------------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 399 (625)
T TIGR02188 353 ---------------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETG 399 (625)
T ss_pred ---------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccC
Confidence 0111258999999999999999999998875 7899999999998
Q ss_pred cceeccCCC-CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cCCce
Q 006047 424 AGTFVSLPN-EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWF 497 (663)
Q Consensus 424 ~~~~~~~~~-~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~~ 497 (663)
+.++..... ....++++|+|+++++++|+| +++...+ +.|+.|||+++| |+++.||+++++.+.+.+ .+|||
T Consensus 400 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~ 477 (625)
T TIGR02188 400 GIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYY 477 (625)
T ss_pred CceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEE
Confidence 776554333 123457899999999999999 6665443 267999999999 689999999998777655 47899
Q ss_pred ecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHH
Q 006047 498 HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAA 574 (663)
Q Consensus 498 ~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~ 574 (663)
+|||+|++|+||+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 478 ~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~------ 550 (625)
T TIGR02188 478 FTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY------ 550 (625)
T ss_pred ECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCC------
Confidence 99999999999999999999999996 7999999999999999999999999997654 6899999988643
Q ss_pred HcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 575 ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. .+.+.++|+++++ ..|+++++|+.|++++.. |+|.+||++|+.|++.+..
T Consensus 551 ------------~~---~~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 551 ------------EP---DDELRKELRKHVR-KEIGPIAKPDKIRFVPGL------PKTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred ------------CC---CHHHHHHHHHHHH-hhcCCCccCcEEEECCCC------CCCCCccchHHHHHHHHcC
Confidence 10 1124456666666 689999999999998665 8999999999999988653
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=566.87 Aligned_cols=508 Identities=19% Similarity=0.239 Sum_probs=416.1
Q ss_pred CCCHHHHHHHHHH-hCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMAVE-RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~a~-~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
++.+.+++.+++. .+|+++|+... +.. ..+.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 116 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALL 116 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 4556678888887 57999999876 322 33689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++.++++.+++++++++.......... ..+..+.++.++.... ......+
T Consensus 117 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~ 185 (570)
T PRK04319 117 GALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVE--------EGPGTLD 185 (570)
T ss_pred HHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcC--------CCcCccC
Confidence 9999999999999999999999999999999999987765433211 2244556666543211 0112345
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+.+++..... ........++++++++|||||||.||+|.++|++++..+......+ ++.++|++++..|++|..
T Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~ 259 (570)
T PRK04319 186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVT 259 (570)
T ss_pred HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhh
Confidence 6666544322 2233345678999999999999999999999999998887766666 788899999999999988
Q ss_pred HHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 282 DRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 282 g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
|+.. ++.++..|+++++... ++..+++.|+++++|+++++|+.+..+.+......
T Consensus 260 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 317 (570)
T PRK04319 260 GTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV---------------------- 317 (570)
T ss_pred CchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc----------------------
Confidence 8755 7778999999998764 89999999999999999999999998864211000
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccC
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (663)
. ....+++|.+++||+++++++.+++++.++.++++.||+||++..+..........++
T Consensus 318 -------------~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 376 (570)
T PRK04319 318 -------------K--------KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPG 376 (570)
T ss_pred -------------c--------cCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCC
Confidence 0 0111579999999999999999999998999999999999998766554443333458
Q ss_pred ccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeee
Q 006047 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 439 ~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
++|.|+|+++++|++ +++... +.|+.|||+++| +.++.||+++++.+.+.|.+|||+|||+|+++++|+++++||
T Consensus 377 ~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR 453 (570)
T PRK04319 377 SMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGR 453 (570)
T ss_pred cCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEec
Confidence 899999999999999 666544 677999999997 899999999999999999999999999999999999999999
Q ss_pred ccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 517 KKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 517 ~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
.+|+|++ +|++|+|.+||+.|.+||+|.+++|++.+++ +.++++|++.++. .. .+
T Consensus 454 ~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~------------------~~---~~ 511 (570)
T PRK04319 454 VDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY------------------EP---SE 511 (570)
T ss_pred CCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC------------------CC---CH
Confidence 9999996 8999999999999999999999999997754 6888889877632 00 12
Q ss_pred HHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 594 FILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
.+.++|+++++ ..|+.|+.|+.|++++.. |+|++||++|++|+++..
T Consensus 512 ~~~~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 512 ELKEEIRGFVK-KGLGAHAAPREIEFKDKL------PKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred HHHHHHHHHHH-HhcccccCCcEEEEeCCC------CCCCchhhhHHHHHHHHh
Confidence 23455666666 689999999999998665 799999999999998753
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=569.99 Aligned_cols=514 Identities=18% Similarity=0.259 Sum_probs=407.0
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHh
Q 006047 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125 (663)
Q Consensus 46 l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~ 125 (663)
..++|.++++.+|+++|+++. +..++..+.+||+||++++.++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 69 ~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 145 (637)
T PRK00174 69 SYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACAR 145 (637)
T ss_pred HHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 467888888999999999976 33223457899999999999999999999999999999999999999999999999
Q ss_pred cCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh---------hhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 126 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
+|++++|+++.++.+++.++++.++++++|+++... ..+...... .+.++.++.++...... . ...
T Consensus 146 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~---~~~ 220 (637)
T PRK00174 146 IGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALAN-CPSVEKVIVVRRTGGDV-D---WVE 220 (637)
T ss_pred cCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHh-CCCccEEEEEcCCCCCc-C---cCC
Confidence 999999999999999999999999999999987542 111111111 13455666554321100 0 000
Q ss_pred cEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhh-hhhhhhhccccCCCCcEEEEcC
Q 006047 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYL 275 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~~~ 275 (663)
.....++++..... .........++++++++|||||||.||||+++|++++..... ....+ ++.++|++++..
T Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~ 294 (637)
T PRK00174 221 GRDLWWHELVAGAS-DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCTA 294 (637)
T ss_pred CCcccHHHHHhhcC-CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEcC
Confidence 01234555554321 122334457789999999999999999999999998765443 22233 678899999999
Q ss_pred ChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 006047 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (663)
Q Consensus 276 p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (663)
|++|..+... ++.+++.|+++++.++ ++..+++.|+++++|++.++|+.++.+.+......
T Consensus 295 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------- 361 (637)
T PRK00174 295 DVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP------------- 361 (637)
T ss_pred CchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc-------------
Confidence 9999988754 7778999999998753 68999999999999999999999998765311100
Q ss_pred HHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeecccccccccce
Q 006047 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCAGT 426 (663)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~~~ 426 (663)
....+++||.+++||+++++++.+++.+.++ +++++.||+||++..+
T Consensus 362 ------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 411 (637)
T PRK00174 362 ------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIM 411 (637)
T ss_pred ------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCce
Confidence 0011258999999999999999999988775 7899999999998766
Q ss_pred eccCCCC-ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cCCceecC
Q 006047 427 FVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWFHTG 500 (663)
Q Consensus 427 ~~~~~~~-~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~~~TG 500 (663)
....... ....+++|.|+++++++|+| +++.. ++.|+.|||+++| |.++.||+++++.+.+.+ .+|||+||
T Consensus 412 ~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~--~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG 488 (637)
T PRK00174 412 ITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNP--LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG 488 (637)
T ss_pred EecCCCCCCcCCCcccCCCCCceEEEEC-CCCCC--CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence 5443322 22347899999999999999 66654 4567999999999 689999999998777655 47899999
Q ss_pred cEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcC
Q 006047 501 DIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENG 577 (663)
Q Consensus 501 Dlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~ 577 (663)
|+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 489 Dl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~--------- 558 (637)
T PRK00174 489 DGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGE--------- 558 (637)
T ss_pred ceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCC---------
Confidence 99999999999999999999997 7999999999999999999999999997654 6899999987642
Q ss_pred CCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 578 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
. .. +.+.++|+++++ ..|+.++.|..|++++.. |+|++||++|+.|++.+..
T Consensus 559 -~-------~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 559 -E-------PS----DELRKELRNWVR-KEIGPIAKPDVIQFAPGL------PKTRSGKIMRRILRKIAEG 610 (637)
T ss_pred -C-------CC----HHHHHHHHHHHH-hhcCCccCCCEEEEcCCC------CCCCCcchHHHHHHHHHcC
Confidence 0 01 233445666666 689999999999999665 7999999999999987643
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=499.65 Aligned_cols=501 Identities=18% Similarity=0.226 Sum_probs=426.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.+++.++|..+|.++||++|+++. + +.+||++|.++++++|..|++.|+++||+|.+.+||..++++++||
T Consensus 27 d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA 97 (542)
T COG1021 27 DRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA 97 (542)
T ss_pred CCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence 578999999999999999999965 2 5599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh----hhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~----~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
++++|+.+|.--|.....+|....+.++++.+|.++... ..+.+......+.++.+++.++.+..
T Consensus 98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~----------- 166 (542)
T COG1021 98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP----------- 166 (542)
T ss_pred HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence 999999999888988999999999999999999887532 22222222233778888888554321
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
......+........+.++.++++++|+..+.||||.||.|+.||.....+++.-.+.+ .+++.++++|.+|..
T Consensus 167 -~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A 240 (542)
T COG1021 167 -SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA 240 (542)
T ss_pred -chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence 12222333333334445677889999999999999999999999999999999988888 899999999999999
Q ss_pred hHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+-+.. .+..++.|+++|+.+. ++..-+.+|+++++|+.-.+|.+...++...+.
T Consensus 241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~--------------------- 299 (542)
T COG1021 241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW--------------------- 299 (542)
T ss_pred cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc---------------------
Confidence 9988865 6788999999999876 999999999999999999999998887654332
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
....+++||.+-.||+.+++++.+++...+||.+-+.|||.|.-...+.-......
T Consensus 300 ------------------------~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~ 355 (542)
T COG1021 300 ------------------------ERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEI 355 (542)
T ss_pred ------------------------ccCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHh
Confidence 12233799999999999999999999999999999999999965444333322233
Q ss_pred ccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 436 ~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...+-|+|+ |.-+++|+| .+|+ ++++||+|+|.++||..++|||+.|..+++.| .+|||+|||++++|+||++.+
T Consensus 356 i~~TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V 432 (542)
T COG1021 356 IIHTQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVV 432 (542)
T ss_pred eeecCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEE
Confidence 357789999 589999999 6664 66788999999999999999999999999999 899999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.+|+|+ ++|+||-.+|||+.|..||.|.+|++++.+|+ +..||||++++... +
T Consensus 433 ~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~-----------------~--- 491 (542)
T COG1021 433 EGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL-----------------R--- 491 (542)
T ss_pred Eeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC-----------------C---
Confidence 999999999 89999999999999999999999999998876 79999999987531 1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
..+|++++.+..+.+|++|.+|.+++.. |.|+-|||++++|++++...
T Consensus 492 -----~~qlr~~L~~~GlAa~K~PDrie~v~~~------P~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 492 -----AAQLRRFLRERGLAAFKLPDRIEFVDSL------PLTAVGKIDKKALRRRLASR 539 (542)
T ss_pred -----HHHHHHHHHHcchhhhcCCcceeecccC------CCcccccccHHHHHHHhhhh
Confidence 2456666667899999999999999766 79999999999999887653
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=557.04 Aligned_cols=519 Identities=22% Similarity=0.249 Sum_probs=420.2
Q ss_pred CceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCC
Q 006047 24 GPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103 (663)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~g 103 (663)
.+.+|+.+...|.... .++.+.|.++++.+|+++|+++. +...++++.+||.||+++++++|.+|.+.|+++|
T Consensus 8 ~~~~~~~~~~~~~~~~----~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g 80 (547)
T PRK13295 8 LPPRRAASIAAGHWHD----RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRG 80 (547)
T ss_pred CchhHHHhhcCCCCcC----CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3456666666666653 68999999999999999999876 4334456889999999999999999999999999
Q ss_pred CEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh-----hhHhhcCCCcCCCCcEE
Q 006047 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTI 178 (663)
Q Consensus 104 d~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i 178 (663)
|+|+++++|++++++++|||+++|++++|++|.++.+++..+++.++++++++++... ..+.+.. .....++.+
T Consensus 81 ~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (547)
T PRK13295 81 DVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLR-PELPALRHV 159 (547)
T ss_pred CEEEEECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHh-hhCCCcceE
Confidence 9999999999999999999999999999999999999999999999999999987642 1111111 122445566
Q ss_pred EEecCCChhhHHHHhhcCcEEEeHHHHHhcccc-------cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHH
Q 006047 179 VSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN-------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251 (663)
Q Consensus 179 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~ 251 (663)
+.++... ..++.+++..... .........++++++++|||||||.||+|.++|.+++..+
T Consensus 160 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~ 226 (547)
T PRK13295 160 VVVGGDG-------------ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226 (547)
T ss_pred EEecCCC-------------ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHH
Confidence 6554321 1223333322100 0111223467899999999999999999999999999888
Q ss_pred hhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHH
Q 006047 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (663)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (663)
......+ ++.+++++++..|++|..++.. ++.++..|+++++.+. ++..+++.++++++|.+.++|+.+..+.
T Consensus 227 ~~~~~~~-----~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~ 301 (547)
T PRK13295 227 VPYAERL-----GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLT 301 (547)
T ss_pred HHHHHHh-----CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 8876666 7889999999999999998765 7778999999998876 8999999999999999999999998876
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc
Q 006047 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA 409 (663)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 409 (663)
...... ....+++|.+++||+++++++.+.+++.+
T Consensus 302 ~~~~~~---------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~ 336 (547)
T PRK13295 302 RAVKES---------------------------------------------GRPVSSLRTFLCAGAPIPGALVERARAAL 336 (547)
T ss_pred hccccc---------------------------------------------CCCcccceEEEEecCCCCHHHHHHHHHHh
Confidence 532110 00115799999999999999999999888
Q ss_pred CCceeecccccccccceeccCCCC-ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhh
Q 006047 410 CAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488 (663)
Q Consensus 410 ~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~ 488 (663)
+.++++.||+||++.++....... .....++|+|+++++++|+| +++. +++.|+.|||+|+|+.++.||+++++.+
T Consensus 337 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t 413 (547)
T PRK13295 337 GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFGGYLKRPQLN 413 (547)
T ss_pred CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccccccCCcccc
Confidence 999999999999987665544322 22236789999999999999 6654 4567799999999999999999999888
Q ss_pred hccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecC
Q 006047 489 KEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPN 565 (663)
Q Consensus 489 ~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~ 565 (663)
... .+|||+|||+|+++++|++++.||.+|+|++ +|++|+|.+||++|.++++|.+++|++.++. +.++++|++.
T Consensus 414 ~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~ 491 (547)
T PRK13295 414 GTD-ADGWFDTGDLARIDADGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491 (547)
T ss_pred ccC-CCCCeecceEEEEcCCceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeC
Confidence 766 6889999999999999999999999999996 8999999999999999999999999997644 5799999887
Q ss_pred hHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 566 KDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
++. . . ..+++.+++.+..++++++|+++++++.. |+|.+||++|++|+++
T Consensus 492 ~~~------------------~-~-----~~~~l~~~~~~~~l~~~~~P~~i~~v~~l------P~t~sgK~~r~~L~~~ 541 (547)
T PRK13295 492 PGQ------------------S-L-----DFEEMVEFLKAQKVAKQYIPERLVVRDAL------PRTPSGKIQKFRLREM 541 (547)
T ss_pred CCC------------------C-C-----CHHHHHHHHHhccCccccCCcEEEEeccC------CCCCCccccHHHHHHH
Confidence 531 0 0 01345555554579999999999999665 8999999999999987
Q ss_pred HHH
Q 006047 646 YQV 648 (663)
Q Consensus 646 ~~~ 648 (663)
+.+
T Consensus 542 ~~~ 544 (547)
T PRK13295 542 LRG 544 (547)
T ss_pred Hhc
Confidence 754
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=562.85 Aligned_cols=522 Identities=15% Similarity=0.185 Sum_probs=405.6
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
+...++|.++++.+|+++|+++. +..++..+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 53 n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 129 (629)
T PRK10524 53 NLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129 (629)
T ss_pred eHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 33578888888899999999875 333334578999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh---------hhHhhcCCCcCCCCcEEEEecCCChhhHHHHhh
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 194 (663)
+++|++++|+++.++.+++..+|++++++++|+++... +.+.+...........++.++...... ..
T Consensus 130 ~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~ 205 (629)
T PRK10524 130 ARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----AR 205 (629)
T ss_pred HHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Cc
Confidence 99999999999999999999999999999999976421 222222221112345566554321100 00
Q ss_pred cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhh-hhhhhhhccccCCCCcEEEE
Q 006047 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVS 273 (663)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~ 273 (663)
.......+.++.........+.....++++++++|||||||.||||.++|.+++..... +...+ ++.++|++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~ 280 (629)
T PRK10524 206 VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFFC 280 (629)
T ss_pred ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 00112345555443222222223346789999999999999999999999987654433 33333 6788999999
Q ss_pred cCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 006047 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (663)
Q Consensus 274 ~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (663)
..|++|..+... ++.+++.|+++++.++ ++..+++.|+++++|+++++|+.++.+.+.....
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------ 348 (629)
T PRK10524 281 ASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL------------ 348 (629)
T ss_pred cCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc------------
Confidence 999999887654 6778999999998763 6889999999999999999999998875421000
Q ss_pred HHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeeccccccccccee
Q 006047 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTF 427 (663)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 427 (663)
.+...+++||.+++||+++++++.+++.+.+++++++.||+||++..+.
T Consensus 349 -------------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~ 397 (629)
T PRK10524 349 -------------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPIL 397 (629)
T ss_pred -------------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhh
Confidence 0011125799999999999999999999989999999999999985333
Q ss_pred ccCCC---CccccCccCccccCeEEEEeecC-CCccccCCCCCCCeEEEccC---cccccccCChhhhhccc----cCCc
Q 006047 428 VSLPN---EMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVM----VDGW 496 (663)
Q Consensus 428 ~~~~~---~~~~~~~~G~p~~~~~v~iv~~~-~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~----~~g~ 496 (663)
..... .....+++|.|+++++++|+| + ++. +++.|+.|||+++|| .++.||+++++...+.+ .++|
T Consensus 398 ~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~--~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (629)
T PRK10524 398 AIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGE--PCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQV 474 (629)
T ss_pred cCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCC--CCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcE
Confidence 22221 123357899999999999999 5 554 456789999999998 57889999887665543 4689
Q ss_pred eecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHH
Q 006047 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWA 573 (663)
Q Consensus 497 ~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~ 573 (663)
|+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++++|++..+..
T Consensus 475 ~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~---- 549 (629)
T PRK10524 475 YSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDS---- 549 (629)
T ss_pred EEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCc----
Confidence 999999999999999999999999997 7999999999999999999999999998765 58999999876420
Q ss_pred HHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 574 AENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
..+.+..+.+.++|+++++ ..|++++.|..|++++.. |+|++||++|+.|++.+.
T Consensus 550 ------------~~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~ 604 (629)
T PRK10524 550 ------------LADREARLALEKEIMALVD-SQLGAVARPARVWFVSAL------PKTRSGKLLRRAIQAIAE 604 (629)
T ss_pred ------------cccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcCCC------CCCCCcchHHHHHHHHHc
Confidence 0111223445566777777 789999999999999665 899999999999998754
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-63 Score=551.20 Aligned_cols=505 Identities=18% Similarity=0.195 Sum_probs=394.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCC----CCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGK----AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~----~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
.|+.++|.+.++++|+++|++.. +.. ...++.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~ 82 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL 82 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence 57889999999999999999875 321 12345799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCC--hhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCc
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK--IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~--~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 197 (663)
+|||+++|++++|++|.++.+++.++++.++++++|+++.. ...+.... ......++.++... ..
T Consensus 83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~~ 149 (552)
T PRK09274 83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------LW 149 (552)
T ss_pred HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------cc
Confidence 99999999999999999999999999999999999987521 11111111 11223333332210 00
Q ss_pred EEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh
Q 006047 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (663)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 277 (663)
...+++++...............++++++++|||||||.||+|.++|+++...+......+ ++.++++.++.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~pl 224 (552)
T PRK09274 150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFPL 224 (552)
T ss_pred CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccCH
Confidence 1123444442222222233445678999999999999999999999999999888877766 78899999999999
Q ss_pred hhHHHHHHHHHHHHcCcEEEEEc--------CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 006047 278 AHIFDRAIEEVFISNGAAIGFWR--------GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (663)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (663)
+|.+++ ..|+++++.+ .++..+++.|+++++|+++++|+++..+.+.....
T Consensus 225 ~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 283 (552)
T PRK09274 225 FALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-------------- 283 (552)
T ss_pred HHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc--------------
Confidence 876543 4577777654 27899999999999999999999999987643211
Q ss_pred HHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc--CCceeeccccccccccee
Q 006047 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGTF 427 (663)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~ 427 (663)
...++++|.+++||+++++++.+.+++.+ ++++++.||+||++.++.
T Consensus 284 -------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 332 (552)
T PRK09274 284 -------------------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS 332 (552)
T ss_pred -------------------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence 01125799999999999999999999988 469999999999987655
Q ss_pred ccCCC---------CccccCccCccccCeEEEEeecCCC------ccccCCCCCCCeEEEccCcccccccCChhhhhccc
Q 006047 428 VSLPN---------EMSMIGTVGPPVPNVDVCLESVPEM------EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492 (663)
Q Consensus 428 ~~~~~---------~~~~~~~~G~p~~~~~v~iv~~~~~------~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 492 (663)
..... ......++|+|+++++++|+|..++ ...+++.|+.|||+++|++++.||+++++.+...|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~ 412 (552)
T PRK09274 333 IESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAK 412 (552)
T ss_pred ecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhh
Confidence 43221 1111247899999999999983221 23456788999999999999999999999888765
Q ss_pred ---cCC--ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC--CeEEEEEecC
Q 006047 493 ---VDG--WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE--SFLVAIVNPN 565 (663)
Q Consensus 493 ---~~g--~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~--~~~~a~v~~~ 565 (663)
.+| ||+|||+|++|+||+|+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++|++.
T Consensus 413 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~ 491 (552)
T PRK09274 413 IPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELE 491 (552)
T ss_pred cccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEcc
Confidence 356 9999999999999999999999999996 8999999999999999999999999997654 4788888877
Q ss_pred hHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccC--cccccchHHHH
Q 006047 566 KDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLT--PTYKKKRPQLL 643 (663)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t--~~GKv~R~~l~ 643 (663)
++. ....+.+.+.+++++. ..+.++.|.++.+++.. |+| ++||++|++|+
T Consensus 492 ~~~--------------------~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~~l------P~t~~~~GKi~r~~L~ 543 (552)
T PRK09274 492 PGV--------------------ACSKSALYQELRALAA--AHPHTAGIERFLIHPSF------PVDIRHNAKIFREKLA 543 (552)
T ss_pred Ccc--------------------ccchHHHhhhhHHHHH--hcCCCcceeEEeccCCC------CccccccccccHHHHH
Confidence 642 0011234455555554 34567788889888665 798 79999999999
Q ss_pred HHHHHHH
Q 006047 644 KHYQVTF 650 (663)
Q Consensus 644 ~~~~~~~ 650 (663)
+++.+.+
T Consensus 544 ~~~~~~~ 550 (552)
T PRK09274 544 VWAAKQL 550 (552)
T ss_pred HHHHHhh
Confidence 9887653
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=551.81 Aligned_cols=509 Identities=20% Similarity=0.214 Sum_probs=396.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.+.|.++|+++|+++|++.. ++. +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|
T Consensus 12 ~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l 84 (540)
T PRK05857 12 LPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84 (540)
T ss_pred CCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence 3467999999999999999999865 442 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++.++++.++++.+|+++...... .........+. ++.++..... . .
T Consensus 85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~----------~-~- 150 (540)
T PRK05857 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT----------R-E- 150 (540)
T ss_pred HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc----------c-c-
Confidence 9999999999999999999999999999999999998653211 11111111222 2222211100 0 0
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+...... ..........++++++++|||||||.||+|.++|+++.++...+.... ........++++++.+|++|..
T Consensus 151 ~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~h~~ 227 (540)
T PRK05857 151 SEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPLPATHIG 227 (540)
T ss_pred ccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecCCccccc
Confidence 0000000 001112345678999999999999999999999999987655432210 0111455788999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcC
Q 006047 282 DRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (663)
++...+.+++.|+++++.+.++..+++.|+++++|+++++|+++..+++......
T Consensus 228 ~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~------------------------- 282 (540)
T PRK05857 228 GLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN------------------------- 282 (540)
T ss_pred hHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-------------------------
Confidence 9887788899999988766689999999999999999999999998865321100
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC----cccc
Q 006047 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----MSMI 437 (663)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~----~~~~ 437 (663)
..++++|.+++||++++....+++ +.++.++++.||+||++.......... ....
T Consensus 283 --------------------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 341 (540)
T PRK05857 283 --------------------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEA 341 (540)
T ss_pred --------------------CcCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccccccccc
Confidence 011579999999999998877644 467999999999999986544332221 1124
Q ss_pred CccCccccCeEEEEeecCCCccc----cCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEE
Q 006047 438 GTVGPPVPNVDVCLESVPEMEYD----ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 438 ~~~G~p~~~~~v~iv~~~~~~~~----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~ 513 (663)
+++|+|++|++++|++ +++... ..+.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|++|++++
T Consensus 342 ~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~ 420 (540)
T PRK05857 342 GAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYI 420 (540)
T ss_pred CCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEE
Confidence 7899999999999998 555421 12346899999999999999999999999999999999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.+|+|++ +|++|+|.+||++|..||+|.+|+|++.+++ +.++++++..++. +..
T Consensus 421 ~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~-------------------~~~ 480 (540)
T PRK05857 421 KGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL-------------------DES 480 (540)
T ss_pred eccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC-------------------Chh
Confidence 9999999996 8999999999999999999999999997754 4667777665421 112
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
..+.+.+.+.+.++ ..++++++|+.+.++++. |+|++||++|++|++.++.
T Consensus 481 ~~~~l~~~~~~~~~-~~l~~~~~P~~v~~~~~i------P~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 481 AARALKHTIAARFR-RESEPMARPSTIVIVTDI------PRTQSGKVMRASLAAAATA 531 (540)
T ss_pred hHHHHHHHHHHHHH-hhhccccCCeEEEEhhcC------CCCCCcceeHHHHHHhhhh
Confidence 23445566666666 679999999999999665 7999999999999988764
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-63 Score=551.95 Aligned_cols=524 Identities=22% Similarity=0.296 Sum_probs=402.4
Q ss_pred CceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCC
Q 006047 24 GPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEE 102 (663)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~ 102 (663)
+.+|++...+..+|.. +....+..+|.+ +.+|+++|++.. +.. .++||+||.++++++|.+|.+ .|+++
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~ 91 (560)
T PLN02574 22 TGIYSSKHPPVPLPSD-PNLDAVSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQ 91 (560)
T ss_pred CeeecCCCCCCCCCCC-CCCCHHHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4677776322222221 122223444544 678999999854 221 369999999999999999999 99999
Q ss_pred CCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEec
Q 006047 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182 (663)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~ 182 (663)
||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++++.+....+.... . .++.+.
T Consensus 92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~ 164 (560)
T PLN02574 92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLG------V-PVIGVP 164 (560)
T ss_pred CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcC------C-cEEecC
Confidence 999999999999999999999999999999999999999999999999999999987655443211 1 122221
Q ss_pred CCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhcc
Q 006047 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262 (663)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~ 262 (663)
.... .........++.+++..... ....+...++++++++|||||||.||+|.+||+++.+.+..+........
T Consensus 165 ~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 238 (560)
T PLN02574 165 ENYD-----FDSKRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQY 238 (560)
T ss_pred cccc-----cccCccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhcccccc
Confidence 1100 00000112345554443322 12233456789999999999999999999999999987776543211111
Q ss_pred ccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCC
Q 006047 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (663)
Q Consensus 263 ~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~ 340 (663)
......++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.....
T Consensus 239 ~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----- 313 (560)
T PLN02574 239 EYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----- 313 (560)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc-----
Confidence 12235688899999999999876 5567888999988876 9999999999999999999999999886532110
Q ss_pred hhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccc
Q 006047 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGL 419 (663)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~ 419 (663)
.....+++|.+++||+++++++.+.+.+.+ +..+++.||+
T Consensus 314 ---------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~ 354 (560)
T PLN02574 314 ---------------------------------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354 (560)
T ss_pred ---------------------------------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccc
Confidence 001125799999999999999999998877 7899999999
Q ss_pred cccccceeccCC-CCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCce
Q 006047 420 TETCAGTFVSLP-NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (663)
Q Consensus 420 tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~ 497 (663)
||++........ .......++|.|+++++++|+|.+++ .+++.|+.|||||+|++++.||+++++.+.+.| .+|||
T Consensus 355 tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g--~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 432 (560)
T PLN02574 355 TESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTG--CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWL 432 (560)
T ss_pred cccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCC--cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCc
Confidence 999865543222 22234578999999999999994444 456678999999999999999999999998887 68999
Q ss_pred ecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHH
Q 006047 498 HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAA 574 (663)
Q Consensus 498 ~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~ 574 (663)
+|||+|+++++|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.++. +.++++|++.++.
T Consensus 433 ~TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~------ 505 (560)
T PLN02574 433 RTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS------ 505 (560)
T ss_pred ccceEEEEECCCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC------
Confidence 99999999999999999999999997 7999999999999999999999999997653 5788999876532
Q ss_pred HcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 575 ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. . .++|.++++ +.|++++.|+.+.+++.. |+|++||++|+.|++.+.+
T Consensus 506 ------------~~--~----~~~l~~~~~-~~l~~~~~p~~v~~v~~i------P~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 506 ------------TL--S----QEAVINYVA-KQVAPYKKVRKVVFVQSI------PKSPAGKILRRELKRSLTN 554 (560)
T ss_pred ------------CC--C----HHHHHHHHH-HhccCcccCcEEEEeecc------CCCCcchhhHHHHHHHHhh
Confidence 00 0 134455555 679999999999988665 7999999999999988754
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-63 Score=560.88 Aligned_cols=512 Identities=16% Similarity=0.149 Sum_probs=396.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.|+.+.+..+ .+|+++|+++. +. .++.+.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~ 159 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT 159 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3555555443 58999999986 32 345688999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh---------hhHhhcCCCcCCCCcEEEEecCCChhhHHHHhh
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 194 (663)
+++|++++|+++.++.+++.++|+.++++++|+++... ..+.+... ..+.+..++.++....... ..
T Consensus 160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~---~~ 235 (655)
T PRK03584 160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRA-ALPSLEHVVVVPYLGPAAA---AA 235 (655)
T ss_pred HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHh-cCCCccEEEEEecCCCccc---cc
Confidence 99999999999999999999999999999999987532 12222111 1234455665543211000 00
Q ss_pred cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHH-HhhhhhhhhhccccCCCCcEEEE
Q 006047 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF-IAGVKCLLESVNEKLTSEDVYVS 273 (663)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~~~ 273 (663)
.......|++++...............+++++++|||||||.||||++||.+++.. .......+ ++.++|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~ 310 (655)
T PRK03584 236 ALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFW 310 (655)
T ss_pred ccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 01123456666653222223334557799999999999999999999999987643 44444444 7889999999
Q ss_pred cCChhhHHHHHHHHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 006047 274 YLPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (663)
Q Consensus 274 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (663)
+.++.|..+. ..+.+++.|+++++.++ ++..+++.++++++|++.++|+++..+.+...
T Consensus 311 ~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------- 374 (655)
T PRK03584 311 YTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL--------------- 374 (655)
T ss_pred cCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------
Confidence 9999886442 35678999999999763 78999999999999999999999988753100
Q ss_pred HHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc--CCceeecccccccccce
Q 006047 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGT 426 (663)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~ 426 (663)
.+ .. ...+++||.+++||+++++++.+++.+.+ +..+.+.||+||+++..
T Consensus 375 -------------------~~-~~--------~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~ 426 (655)
T PRK03584 375 -------------------VP-GE--------THDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCF 426 (655)
T ss_pred -------------------Cc-cc--------cCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhccc
Confidence 00 00 01115899999999999999999999887 47899999999986544
Q ss_pred eccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC--cccccccCChhhhh--c-cc--cCCceec
Q 006047 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTK--E-VM--VDGWFHT 499 (663)
Q Consensus 427 ~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~--~~~~gy~~~~~~~~--~-~~--~~g~~~T 499 (663)
...........+++|.|++|++++|+| +++... .|+.|||+|+|| +++.||+++++.++ . .| .+|||+|
T Consensus 427 ~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~T 502 (655)
T PRK03584 427 VGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRH 502 (655)
T ss_pred ccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeec
Confidence 333222223358899999999999999 766544 579999999996 78999999887543 1 22 3689999
Q ss_pred CcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHc
Q 006047 500 GDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAEN 576 (663)
Q Consensus 500 GDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~ 576 (663)
||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++++|++.++.
T Consensus 503 GDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~-------- 573 (655)
T PRK03584 503 GDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGV-------- 573 (655)
T ss_pred CCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCC--------
Confidence 999999999999999999999996 8999999999999999999999999997753 6899999987642
Q ss_pred CCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 577 GVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
. ..+.+.++|+++++ ..|+++++|..|++++.. |+|++|||+|+.|++.+.
T Consensus 574 ----------~---~~~~~~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~t~sGKi~r~~lr~~~~ 624 (655)
T PRK03584 574 ----------T---LDDALRARIRTTIR-TNLSPRHVPDKIIAVPDI------PRTLSGKKVELPVKKLLH 624 (655)
T ss_pred ----------C---CcHHHHHHHHHHHH-hhCCCCcCCCEEEECCCC------CCCCCccchHHHHHHHHc
Confidence 0 01233455666666 689999999999999765 899999999999998874
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-63 Score=560.31 Aligned_cols=513 Identities=16% Similarity=0.152 Sum_probs=390.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..|+.+.+.. +.++++|+++. +. .+..+.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++||
T Consensus 86 ~~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA 158 (652)
T TIGR01217 86 RLNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLA 158 (652)
T ss_pred eeeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 3455555544 35789999886 33 34457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCC---------hhhHhhcCCCcCCCCcEEEEecCCChhhHHHHh
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK---------IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 193 (663)
|+++|++++|+++.++.+++.++|++++++++|+++.. .+.+.+.... .+.++.++.++.........
T Consensus 159 ~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~-- 235 (652)
T TIGR01217 159 TASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKE-LPTLRAVVHIPYLGPRETEA-- 235 (652)
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhc-CCCccEEEEEeCCCCccccc--
Confidence 99999999999999999999999999999999998754 2222222221 24455666654321000000
Q ss_pred hcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHH-HHhhhhhhhhhccccCCCCcEEE
Q 006047 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT-FIAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~-~~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
.......+|+++................+++++++|||||||.||||+++|.+++. ........+ ++.++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 310 (652)
T TIGR01217 236 PKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLF 310 (652)
T ss_pred ccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEE
Confidence 00012345666654422222223345678999999999999999999999998654 333333334 688999999
Q ss_pred EcCChhhHHHHHHHHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 006047 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (663)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (663)
+..|+.|..+ ..++.+++.|++++++++ ++..+++.++++++|++..+|.++..+... . .
T Consensus 311 ~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-~--~----------- 375 (652)
T TIGR01217 311 YYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA-G--V----------- 375 (652)
T ss_pred EeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-C--C-----------
Confidence 9999998753 334578999999999863 678999999999999987777766554320 0 0
Q ss_pred HHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC--Cceeecccccccccc
Q 006047 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC--AHVLQGYGLTETCAG 425 (663)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~--~~v~~~yG~tE~~~~ 425 (663)
.+ .. ...+++||.+++||+++++++.+++.+.++ ..+.+.||+||+++.
T Consensus 376 --------------------~~-~~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~ 426 (652)
T TIGR01217 376 --------------------HP-AR--------THDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSC 426 (652)
T ss_pred --------------------Cc-cc--------cCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhcc
Confidence 00 00 011258999999999999999999988775 456789999997544
Q ss_pred eeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC--cccccccCChhhhh---ccc--cCCcee
Q 006047 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTK---EVM--VDGWFH 498 (663)
Q Consensus 426 ~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~--~~~~gy~~~~~~~~---~~~--~~g~~~ 498 (663)
.....+......+++|.|.+|++++|+| +++... .|+.|||+++|| .++.|||++++.++ ..| .+|||+
T Consensus 427 ~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~ 502 (652)
T TIGR01217 427 FAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWR 502 (652)
T ss_pred ccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEE
Confidence 3332222222347899999999999999 777654 479999999996 68999999998654 223 368999
Q ss_pred cCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHH
Q 006047 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAE 575 (663)
Q Consensus 499 TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~ 575 (663)
|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|||++.++.
T Consensus 503 tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~------- 574 (652)
T TIGR01217 503 HGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGA------- 574 (652)
T ss_pred cCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCC-------
Confidence 9999999999999999999999995 8999999999999999999999999998764 6899999987642
Q ss_pred cCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 576 NGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
+ .. +.+.++|+++++ ..|+++++|+.|++++.. |+|++||++|+.|++.+.
T Consensus 575 -----~-----~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 575 -----T-----LD----DALLDRIKRTIR-AGLSPRHVPDEIIEVPGI------PHTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred -----C-----CC----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCC------CCCCCccChHHHHHHHHc
Confidence 0 01 223455666666 689999999999999665 899999999999998863
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=548.13 Aligned_cols=516 Identities=20% Similarity=0.262 Sum_probs=405.2
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 006047 32 AKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV 111 (663)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~ 111 (663)
++.+-|+..+...++.++|.++++++|+++|+++. ++. +.+||+||.++++++|.+|.+.|+++||+|+|+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~ 76 (534)
T PRK05852 4 MGGAAPMASDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMG 76 (534)
T ss_pred cccccchhhhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 44556667788899999999999999999999875 332 56999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHH
Q 006047 112 NCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191 (663)
Q Consensus 112 n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 191 (663)
|++++++++|||+++|++++++++.++.+++.++|+.++++++|++............ ......+.+.......
T Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--- 150 (534)
T PRK05852 77 SNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS--- 150 (534)
T ss_pred CcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc---
Confidence 9999999999999999999999999999999999999999999998753321111100 1111112221110000
Q ss_pred HhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEE
Q 006047 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271 (663)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 271 (663)
...-...+.... .............++.++++|||||||.||+|.++|+++...+......+ ++..+|++
T Consensus 151 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~ 220 (534)
T PRK05852 151 ---GGTLSVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDAT 220 (534)
T ss_pred ---cccccccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceE
Confidence 000000000000 00001111122346789999999999999999999999999888877766 78899999
Q ss_pred EEcCChhhHHHHHH-HHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 006047 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (663)
Q Consensus 272 ~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (663)
++.+|++|.+++.. ++.+++.|++++++.. ++..+++.|+++++|.++++|+.+..+.+.......
T Consensus 221 ~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------- 290 (534)
T PRK05852 221 VAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS---------- 290 (534)
T ss_pred EEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc----------
Confidence 99999999999876 6677899999888653 788999999999999999999999988764321100
Q ss_pred HHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeeccccccccccee
Q 006047 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTF 427 (663)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 427 (663)
....+++|.+.++|+++++++.+.+.+.++..+++.||+||++..++
T Consensus 291 ---------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~ 337 (534)
T PRK05852 291 ---------------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVT 337 (534)
T ss_pred ---------------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhh
Confidence 00115899999999999999999999989999999999999987655
Q ss_pred ccCCCC----ccccCccCcc--ccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCc
Q 006047 428 VSLPNE----MSMIGTVGPP--VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGD 501 (663)
Q Consensus 428 ~~~~~~----~~~~~~~G~p--~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGD 501 (663)
...... .....+.|.+ .++++++++| +++. +++.|+.|||+++|+.+++||+++++.+.+.|.+|||+|||
T Consensus 338 ~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD 414 (534)
T PRK05852 338 TTQIEGIGQTENPVVSTGLVGRSTGAQIRIVG-SDGL--PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGD 414 (534)
T ss_pred cCCccccccccCcccccccCCCCCCCeEEEEC-CCCC--CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCc
Confidence 433211 1111234444 6999999999 6664 45677999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCC
Q 006047 502 IGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGV 578 (663)
Q Consensus 502 lg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~ 578 (663)
+|++|+||++++.||.+|+|++ +|.+|+|.+||+++.++|+|.+|+|++.+++ +.++++|++++..
T Consensus 415 ~~~~d~dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~---------- 483 (534)
T PRK05852 415 LGSLSAAGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESA---------- 483 (534)
T ss_pred eEEEeCCCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCC----------
Confidence 9999999999999999999995 8999999999999999999999999998754 5788888876531
Q ss_pred CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 579 NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
... .++|.++++ ..|+++++|..|++++.. |+|++||++|++|+++|.+
T Consensus 484 ----------~~~----~~~i~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 484 ----------PPT----AEELVQFCR-ERLAAFEIPASFQEASGL------PHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred ----------CCC----HHHHHHHHH-HhcccccCCeEEEEhhhc------CCCCCccccHHHHHHHhcc
Confidence 001 134555555 678999999999999766 7999999999999998854
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=555.69 Aligned_cols=515 Identities=16% Similarity=0.124 Sum_probs=390.7
Q ss_pred CCHH-HHHHHHHHhCCCCCceEEEeeccCC--CCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 44 ESCW-DVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 44 ~~l~-~~l~~~a~~~Pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
.|+. .+|.++...+|+++|+++. +.. +++++.+||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~ 250 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIY 250 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 4444 4566665678999999987 322 235688999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh---------hhHhhcCCCcCCCCcEEEEecCCChhhHHH
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 191 (663)
|||+++|++++|+++.++.+++.+++++++++++|+++... ..+..... ..++++..........
T Consensus 251 LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~------~~~iv~~~~~~~~~~~ 324 (728)
T PLN03052 251 LAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA------PKAIVLPADGKSVRVK 324 (728)
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC------CcEEEEeCCCCccccc
Confidence 99999999999999999999999999999999999987532 11111111 1233332211000000
Q ss_pred HhhcCcEEEeHHHHHhccccc----CCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCC
Q 006047 192 IEKYGLAVYSWDEFLQLGENK----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267 (663)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 267 (663)
......+|++++...... .......+++++++|+|||||||.||||+++|.+++.........+ ++++
T Consensus 325 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~ 396 (728)
T PLN03052 325 ---LREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRK 396 (728)
T ss_pred ---cccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCC
Confidence 001134567766543211 1112223568999999999999999999999999877665544444 6789
Q ss_pred CcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 268 ~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
+|++++..+++|..+...++.+|..|+++++.++ .+..+++.++++++|++.++|+++..+.+..
T Consensus 397 ~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~------------- 463 (728)
T PLN03052 397 GDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN------------- 463 (728)
T ss_pred CcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-------------
Confidence 9999999999999998777789999999999876 5678999999999999999999998875410
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC-Cceeeccccccccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCA 424 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~ 424 (663)
..+.. .+++||.++++|++++++...++.+.++ .++.+.||+||+++
T Consensus 464 ------------------------~~~~~--------dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 511 (728)
T PLN03052 464 ------------------------CMAGL--------DWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGG 511 (728)
T ss_pred ------------------------CcccC--------ChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCc
Confidence 00111 1158999999999999998888777665 57999999999986
Q ss_pred ceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCc--ccccccCChhhhhcccc-----CC--
Q 006047 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST--VFSGYYKREDLTKEVMV-----DG-- 495 (663)
Q Consensus 425 ~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~--~~~gy~~~~~~~~~~~~-----~g-- 495 (663)
.+...........+++|.|.+|++++|+| +++..++.+..+.|||+++++. ...+|+++. .....|. .|
T Consensus 512 ~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~ 589 (728)
T PLN03052 512 GFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKI 589 (728)
T ss_pred ccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCE
Confidence 54433332233457899999999999999 7776554432246999998653 234566653 2333331 23
Q ss_pred ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHH-hcCcCcceEEEEeeCCC----CeEEEEEecC--hHH
Q 006047 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY-ALVSAIDSVWVYGNSFE----SFLVAIVNPN--KDA 568 (663)
Q Consensus 496 ~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l-~~~~~V~~~~v~~~~~~----~~~~a~v~~~--~~~ 568 (663)
||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++| ..||+|.+++|++.+++ +.+++||++. ++.
T Consensus 590 ~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~ 668 (728)
T PLN03052 590 LRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGS 668 (728)
T ss_pred EEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCC
Confidence 9999999999999999999999999996 89999999999999 58999999999997653 5799999987 321
Q ss_pred HHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 569 LERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+ +. .+.+++.+++.++ ++|+++.+|..|++++.. |+|.+||++|+.|++.+.+
T Consensus 669 ------------~----~~----~~~L~~~i~~~i~-~~l~~~~~p~~i~~v~~l------P~T~sGKi~Rr~Lr~~~~~ 721 (728)
T PLN03052 669 ------------N----PD----LNELKKIFNSAIQ-KKLNPLFKVSAVVIVPSF------PRTASNKVMRRVLRQQLAQ 721 (728)
T ss_pred ------------C----CC----HHHHHHHHHHHHH-hhcCCccCCCEEEEcCCC------CCCCchHHHHHHHHHHHHh
Confidence 0 01 1334455555555 688899999999998665 8999999999999999877
Q ss_pred HH
Q 006047 649 TF 650 (663)
Q Consensus 649 ~~ 650 (663)
..
T Consensus 722 ~~ 723 (728)
T PLN03052 722 EL 723 (728)
T ss_pred hh
Confidence 65
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-62 Score=540.85 Aligned_cols=522 Identities=25% Similarity=0.293 Sum_probs=414.8
Q ss_pred CCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCC
Q 006047 21 PSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100 (663)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv 100 (663)
.+++=+||+....- ..++..++.+++.++++.+|+++|++.. +.. +++||.||.++++++|++|.+.|+
T Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~ 72 (537)
T PLN02246 4 ASEEFIFRSKLPDI----YIPNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGI 72 (537)
T ss_pred ccceeEecCCCCCC----CCCCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCC
Confidence 34455677764332 2234568999999999999999999754 211 579999999999999999999999
Q ss_pred CCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEE
Q 006047 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180 (663)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~ 180 (663)
++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++++++.....+...... .. ..++.
T Consensus 73 ~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~-~~~i~ 149 (537)
T PLN02246 73 RQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DG-VTVVT 149 (537)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CC-ceEEE
Confidence 9999999999999999999999999999999999999999999999999999999988766654433221 12 23444
Q ss_pred ecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhh
Q 006047 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES 260 (663)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~ 260 (663)
++.... ...++.++..... ...+.....++++++++|||||||.||+|.++|++++..+....... .
T Consensus 150 ~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~ 216 (537)
T PLN02246 150 IDDPPE-----------GCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-N 216 (537)
T ss_pred eCCCCC-----------CceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-c
Confidence 443211 1234555443321 12223345678999999999999999999999999988776543311 0
Q ss_pred ccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhc
Q 006047 261 VNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (663)
Q Consensus 261 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 338 (663)
....+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 217 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---- 292 (537)
T PLN02246 217 PNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV---- 292 (537)
T ss_pred cccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc----
Confidence 1126789999999999999999866 5667999999999886 899999999999999999999998887542110
Q ss_pred CChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecc
Q 006047 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGY 417 (663)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~y 417 (663)
. ...++++|.+++||+++++++.+.+++.+ +..+++.|
T Consensus 293 ---------------------------------~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~Y 331 (537)
T PLN02246 293 ---------------------------------E--------KYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGY 331 (537)
T ss_pred ---------------------------------c--------ccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccc
Confidence 0 00114799999999999999999999987 67899999
Q ss_pred cccccccceeccCC----CCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-
Q 006047 418 GLTETCAGTFVSLP----NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (663)
Q Consensus 418 G~tE~~~~~~~~~~----~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~- 492 (663)
|+||++.++..... ......+++|+|++++++++++.+++ .+++.|+.|||+++|+.++.||+++++.+.+.+
T Consensus 332 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~ 409 (537)
T PLN02246 332 GMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETG--ASLPRNQPGEICIRGPQIMKGYLNDPEATANTID 409 (537)
T ss_pred cccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCC--CcCCCCCceEEEEECCchhccccCCchhhhhccc
Confidence 99999876543321 11123468999999999999983233 456678999999999999999999999998887
Q ss_pred cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHH
Q 006047 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDAL 569 (663)
Q Consensus 493 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 569 (663)
.+|||+|||+|+++++|++++.||.+|+|++ +|++|+|.+||+.+.++|+|.+|+|++.+++ +.+++++++.++.
T Consensus 410 ~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~- 487 (537)
T PLN02246 410 KDGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGS- 487 (537)
T ss_pred CCCCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCC-
Confidence 6899999999999999999999999999996 7999999999999999999999999997644 5788888876532
Q ss_pred HHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 570 ERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
. ...++|+++++ ..|+.++.|.+|.+++.. |+|++||++|++|++++.+
T Consensus 488 -----------------~------~~~~~l~~~l~-~~l~~~~~p~~i~~~~~~------P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 488 -----------------E------ITEDEIKQFVA-KQVVFYKRIHKVFFVDSI------PKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred -----------------C------CCHHHHHHHHH-hhCcCccccceEEEeccC------CCCCcchhhHHHHHHHHhc
Confidence 0 01134555555 689999999999988665 7999999999999988753
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=544.38 Aligned_cols=490 Identities=19% Similarity=0.216 Sum_probs=397.5
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|.++++++||++|++.. + +.+||+||.++++++|.+|.+.|+++|++|+++++|++++++++|||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999854 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++.++++.++++++|++......+...... .+....++.+.... ....++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~ 180 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALAD-CPQATRIVAWTDED------------HDLTVE 180 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhh-ccccceEEEecCCc------------ccccHH
Confidence 99999999999999999999999999999999998765544333221 12233333332211 012344
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 283 (663)
.+....... .+...+++.++++|||||||.||+|.++|.+++.........+ .+..+++++...|++|.+|+
T Consensus 181 ~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~ 252 (537)
T PRK13382 181 VLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF 252 (537)
T ss_pred HHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence 443322111 1123468899999999999999999999999888777766655 67789999999999999999
Q ss_pred HHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCC
Q 006047 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (663)
Q Consensus 284 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (663)
...+.++..|+++++... ++..+++.|+++++|+++++|+++..+++......
T Consensus 253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------- 306 (537)
T PRK13382 253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR-------------------------- 306 (537)
T ss_pred HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------
Confidence 778888999999888765 89999999999999999999999998764211100
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCc
Q 006047 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (663)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 442 (663)
+ ...++++|.+++||+++++++.+.+.+.++.++++.||+||++.++..+........+++|+
T Consensus 307 ---------~--------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~ 369 (537)
T PRK13382 307 ---------N--------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR 369 (537)
T ss_pred ---------c--------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence 0 00114799999999999999999999989999999999999987666444322234578999
Q ss_pred cccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceee
Q 006047 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFK 522 (663)
Q Consensus 443 p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~ 522 (663)
|+++++++|+| +++. +++.|+.|||+++|+.++.||+ ++.+. .+.+|||+|||+++++++|++++.||.+|+|+
T Consensus 370 p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik 443 (537)
T PRK13382 370 PAEGTEIRILD-QDFR--EVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIV 443 (537)
T ss_pred cCcCcEEEEEC-CCCC--CCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeE
Confidence 99999999999 6665 4557799999999999999997 33333 35689999999999999999999999999999
Q ss_pred cCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHH
Q 006047 523 LSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEL 599 (663)
Q Consensus 523 i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 599 (663)
. +|++|+|.+||+.|.+||+|.+++|++.+++ +.++++|++.++. . ...+++
T Consensus 444 ~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------------------~----~~~~~l 498 (537)
T PRK13382 444 S-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGA--------------------S----ATPETL 498 (537)
T ss_pred E-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCC--------------------C----CCHHHH
Confidence 6 8999999999999999999999999997754 5689999876532 0 012345
Q ss_pred HHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 600 SRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 600 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
+++++ ..|+.+++|..+.+++.. |+|++||++|++|++
T Consensus 499 ~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~gK~~r~~L~~ 536 (537)
T PRK13382 499 KQHVR-DNLANYKVPRDIVVLDEL------PRGATGKILRRELQA 536 (537)
T ss_pred HHHHH-HhccCCCCCcEEEEeccC------CCCCCCCCcHHhhCC
Confidence 55555 689999999999998655 799999999999864
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-62 Score=544.48 Aligned_cols=516 Identities=22% Similarity=0.307 Sum_probs=403.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhhHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWII 118 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~ 118 (663)
...+.|+.++|++.++.+|+++|++.. + +.+||+||.++++++|.+|.+ .|+++||+|+++++|++++++
T Consensus 20 ~~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~ 90 (562)
T PRK05677 20 PDEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPV 90 (562)
T ss_pred CCccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence 445678999999999999999999853 2 569999999999999999997 599999999999999999999
Q ss_pred HHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCC--hhh-HHHH---
Q 006047 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK--PEQ-REEI--- 192 (663)
Q Consensus 119 ~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~--~~~-~~~~--- 192 (663)
++|||+++|++++|++|.++.+++.++++.++++++|+++.....+.+.... ..++.++..+... ... ....
T Consensus 91 ~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (562)
T PRK05677 91 AVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAV 168 (562)
T ss_pred HHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccc
Confidence 9999999999999999999999999999999999999987655443332211 1233333322110 000 0000
Q ss_pred --------hhc-CcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccc
Q 006047 193 --------EKY-GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263 (663)
Q Consensus 193 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~ 263 (663)
... ......+.+.+..............++++++++|||||||.||+|.++|.++..........+. .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~ 245 (562)
T PRK05677 169 VKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---S 245 (562)
T ss_pred hhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---c
Confidence 000 0012234444433322222233456799999999999999999999999999887665544331 1
Q ss_pred cCC-CCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcC
Q 006047 264 KLT-SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (663)
Q Consensus 264 ~~~-~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (663)
... ..+++++.+|++|.+++.. .+..+..|++.++.+. ++..+++.|+++++|+++++|+++..++.....
T Consensus 246 ~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----- 320 (562)
T PRK05677 246 NLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAF----- 320 (562)
T ss_pred CCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccc-----
Confidence 233 3468899999999999865 5567788887776653 889999999999999999999999887642100
Q ss_pred ChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccc
Q 006047 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419 (663)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~ 419 (663)
.. ...+++|.+++||+++++++.+.+++.+++++++.||+
T Consensus 321 --------------------------------~~--------~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~ 360 (562)
T PRK05677 321 --------------------------------RK--------LDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGM 360 (562)
T ss_pred --------------------------------cc--------CChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCc
Confidence 00 01147999999999999999999999889999999999
Q ss_pred cccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCcee
Q 006047 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498 (663)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~ 498 (663)
||++.++....... ..++++|.|+++++++++| +++. +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+
T Consensus 361 tE~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~ 436 (562)
T PRK05677 361 TETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGN--ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLK 436 (562)
T ss_pred cccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCC--CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCccc
Confidence 99987665544332 2347899999999999999 6654 45677999999999999999999999999888 589999
Q ss_pred cCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHH
Q 006047 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAE 575 (663)
Q Consensus 499 TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~ 575 (663)
|||+|+++++|++++.||.+|+|++ +|++|+|.+||+.|.+||+|.+++|++.+++ +.++++|++.++.
T Consensus 437 TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~------- 508 (562)
T PRK05677 437 TGDIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE------- 508 (562)
T ss_pred ccceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC-------
Confidence 9999999999999999999999997 7999999999999999999999999997754 5788888766421
Q ss_pred cCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 576 NGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
. .. .++++++++ ..|++|++|+.+++++.. |+|++||++|++|++++.+++
T Consensus 509 -----------~--~~----~~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~sGKi~r~~L~~~~~~~~ 559 (562)
T PRK05677 509 -----------T--LT----KEQVMEHMR-ANLTGYKVPKAVEFRDEL------PTTNVGKILRRELRDEELKKA 559 (562)
T ss_pred -----------C--CC----HHHHHHHHH-HhhhhccCCcEEEEeccC------CCCCcccccHHHHHHHHHHhc
Confidence 0 00 123444444 678899999999999765 799999999999998775543
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-62 Score=535.77 Aligned_cols=477 Identities=23% Similarity=0.319 Sum_probs=399.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
|+++.+.|.+++.++||++|+... + +.+||+||+++++++|.+|.+.|+++||+|+++++|++++++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999854 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++..+++.++++.+++++.......... ...+
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~ 121 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF 121 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence 9999999999999999999999999999999999876543321111 0113
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
+++...............++++++++|||||||.||+|.+||.++...+......+ +++++|++++.+|++|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 196 (483)
T PRK03640 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG 196 (483)
T ss_pred HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence 33333221212222345678999999999999999999999999988776665555 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcC
Q 006047 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (663)
+..++.++..|+++++.+. ++..+++.++++++|++.++|+++..++..+...
T Consensus 197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------- 250 (483)
T PRK03640 197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------- 250 (483)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence 9888888999999998886 9999999999999999999999999886532111
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCC-CccccCcc
Q 006047 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN-EMSMIGTV 440 (663)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~~ 440 (663)
....++|.+++||+++++++.+.+++ +++++++.||+||++..+...... .....+++
T Consensus 251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v 309 (483)
T PRK03640 251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSPEDALTKLGSA 309 (483)
T ss_pred --------------------ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCcccccccccCcccccccCCCc
Confidence 00147999999999999999998887 499999999999987644333322 33345889
Q ss_pred CccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccce
Q 006047 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNI 520 (663)
Q Consensus 441 G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~ 520 (663)
|+|++++++++.+ + + .+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||++++++||++++.||.+|+
T Consensus 310 G~p~~~~~~~i~~-~-~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~ 385 (483)
T PRK03640 310 GKPLFPCELKIEK-D-G--VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL 385 (483)
T ss_pred ccccCCcEEEEec-C-C--CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence 9999999999988 3 3 4567789999999999999999999999999899999999999999999999999999999
Q ss_pred eecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHH
Q 006047 521 FKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILG 597 (663)
Q Consensus 521 i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 597 (663)
+++ +|.+|+|.+||+.+.++++|.++++++.+++ ..+++++++.... . .+
T Consensus 386 i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~--------~~ 438 (483)
T PRK03640 386 IIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------------------T--------EE 438 (483)
T ss_pred EEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC------------------C--------HH
Confidence 996 8999999999999999999999999987654 4677777754321 1 12
Q ss_pred HHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 598 ELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 598 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.++++++ ..|+++++|..|++++.. |+|++||++|++|++++++
T Consensus 439 ~l~~~~~-~~l~~~~~p~~i~~~~~i------P~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 439 ELRHFCE-EKLAKYKVPKRFYFVEEL------PRNASGKLLRHELKQLVEE 482 (483)
T ss_pred HHHHHHH-HhccCCCCCcEEEEeCCC------CCCCccceeHHHHHHHHhh
Confidence 3444444 678999999999999665 7999999999999999875
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=539.12 Aligned_cols=487 Identities=23% Similarity=0.271 Sum_probs=401.2
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..+.+.|.++|+.+||++|++.. + +.+||.||+++++++|.+|++ .|+++|++|+++++|++++++++||
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46889999999999999999853 2 679999999999999999985 6999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++..+++.++++++++++.....+...... .....++.+. ++
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------~~ 132 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQRVISIT------------------SL 132 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcceEEEec------------------ch
Confidence 999999999999999999999999999999999988765544332211 1122333322 12
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
+++.... ........++++++++|||||||.||+|.++|.++..........+ .+..+|+++..+|++|.+|
T Consensus 133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 204 (496)
T PRK06839 133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG 204 (496)
T ss_pred HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence 2222221 1222344668999999999999999999999999877666554444 6789999999999999999
Q ss_pred HHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 283 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
+.. .+.++..|+++++++. ++..+++.++++++|++.++|++++.++......
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 259 (496)
T PRK06839 205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE------------------------- 259 (496)
T ss_pred HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence 866 5677999999988766 9999999999999999999999999886521100
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCC-CccccCc
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN-EMSMIGT 439 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~ 439 (663)
...++++|.+++||+++++++.+.+++. |+++.+.||+||++..++..... .....++
T Consensus 260 --------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 318 (496)
T PRK06839 260 --------------------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS 318 (496)
T ss_pred --------------------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence 0112579999999999999999999876 99999999999998765444322 2234578
Q ss_pred cCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccc
Q 006047 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKN 519 (663)
Q Consensus 440 ~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d 519 (663)
+|.|+++++++|++ +++.. ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|+++++|++++.||.+|
T Consensus 319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d 395 (496)
T PRK06839 319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKE 395 (496)
T ss_pred CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccc
Confidence 99999999999999 66654 6678999999999999999999999998888899999999999999999999999999
Q ss_pred eeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHH
Q 006047 520 IFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFIL 596 (663)
Q Consensus 520 ~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 596 (663)
+|+. +|++|+|.+||+.|.++|+|.+|+|++.+++ +.++++|+++++. . . -.
T Consensus 396 ~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~------------------~--~----~~ 450 (496)
T PRK06839 396 MIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSS------------------V--L----IE 450 (496)
T ss_pred eEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC------------------C--C----CH
Confidence 9995 8999999999999999999999999997654 4789999987632 0 0 01
Q ss_pred HHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 597 GELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 597 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
++|++++. ..|+++++|..++++++. |+|.+||++|++|+++.++
T Consensus 451 ~~l~~~~~-~~l~~~~~P~~~~~v~~~------P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 451 KDVIEHCR-LFLAKYKIPKEIVFLKEL------PKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred HHHHHHHH-hhCcCCCCCcEEEEeccC------CCCccccccHHHHHHHhhc
Confidence 34455555 689999999999999776 7999999999999987653
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-62 Score=545.92 Aligned_cols=516 Identities=23% Similarity=0.329 Sum_probs=412.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|+++++++|+++|+.+. + +.+||.||+++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 101 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence 358999999999999999999875 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhh--H-----------
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQ--R----------- 189 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--~----------- 189 (663)
|+++|++++|++|.++.+++.++++.++++++|+++.....+...... .....++..+...... .
T Consensus 102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence 999999999999999999999999999999999988765544332211 1223333332110000 0
Q ss_pred ----HHHhhcCcEEEeHHHHHhccccc---CCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhcc
Q 006047 190 ----EEIEKYGLAVYSWDEFLQLGENK---QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262 (663)
Q Consensus 190 ----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~ 262 (663)
...........+|.++....... .........+++++++|||||||.||+|.+||.++...+......+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-- 257 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG-- 257 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence 00000122345666665542211 122234567899999999999999999999999998877654333210
Q ss_pred ccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCC
Q 006047 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (663)
Q Consensus 263 ~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~ 340 (663)
-...++++++.+|++|.+|+.. ...+++.|+++++.+. ++..+++.++++++|.+.++|+.++.+++......
T Consensus 258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---- 332 (573)
T PRK05605 258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG---- 332 (573)
T ss_pred -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence 1234789999999999999866 5567899999988876 99999999999999999999999998875321110
Q ss_pred hhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeeccccc
Q 006047 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420 (663)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~t 420 (663)
...+++|.+++||+++++++.+.+.+.++..+++.||+|
T Consensus 333 -----------------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T 371 (573)
T PRK05605 333 -----------------------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT 371 (573)
T ss_pred -----------------------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence 011479999999999999999999988899999999999
Q ss_pred ccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecC
Q 006047 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500 (663)
Q Consensus 421 E~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TG 500 (663)
|+++++...........+++|.|++++.++|+| +++...+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus 372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG 450 (573)
T PRK05605 372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG 450 (573)
T ss_pred hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence 998776665544334457899999999999999 5543355677899999999999999999999999999988999999
Q ss_pred cEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcC
Q 006047 501 DIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENG 577 (663)
Q Consensus 501 Dlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~ 577 (663)
|+|+++++|++++.||.+|++++ +|++|+|.+||+++.+++.|.+++|++.++. +.+++++++.++.
T Consensus 451 D~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~--------- 520 (573)
T PRK05605 451 DVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGA--------- 520 (573)
T ss_pred CEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCC---------
Confidence 99999999999999999999996 8999999999999999999999999987543 6888888877632
Q ss_pred CCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 578 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
. .. .++|+++++ ..|+.+++|..+++++.. |+|.+||++|++|++++.+.+
T Consensus 521 ---------~--~~----~~~l~~~~~-~~l~~~~~p~~i~~~~~i------P~t~~GKi~r~~L~~~~~~~~ 571 (573)
T PRK05605 521 ---------A--LD----PEGLRAYCR-EHLTRYKVPRRFYHVDEL------PRDQLGKVRRREVREELLEKL 571 (573)
T ss_pred ---------C--CC----HHHHHHHHH-HhCccccCCcEEEEeccC------CCCCcccccHHHHHHHHHHHh
Confidence 0 00 134555555 678899999999988655 799999999999999987765
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=540.79 Aligned_cols=510 Identities=22% Similarity=0.295 Sum_probs=412.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
..++.++|.+++..+|+++|+++. + +.+||+||.+++.++|.+|.+. |+++||+|+++++|++++++++|
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 79 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence 468999999999999999999875 3 4699999999999999999999 99999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCCh--h-----hHHHH--
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP--E-----QREEI-- 192 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~--~-----~~~~~-- 192 (663)
||+++|++++|+++..+.+++.++++.++++.+++++.....+....... .++.++....... . ...+.
T Consensus 80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccccc
Confidence 99999999999999999999999999999999999988766554433221 2333333221000 0 00000
Q ss_pred -----hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCC
Q 006047 193 -----EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267 (663)
Q Consensus 193 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 267 (663)
...+.++..|++...... ........++++++++|||||||.||+|.++|++++.++......+ .+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~ 230 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NSTP 230 (546)
T ss_pred ccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCC
Confidence 000112345665554321 1223445779999999999999999999999999999888876666 7889
Q ss_pred CcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 268 EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 268 ~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
+|++++.+|++|..|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 231 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~------------ 298 (546)
T PRK08314 231 ESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG------------ 298 (546)
T ss_pred CceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC------------
Confidence 999999999999999865 6678999999999876 89999999999999999999999887754100
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 425 (663)
... ...+++|.+++||+++++++.+++.+.++.++++.||+||++..
T Consensus 299 -------------------------~~~--------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 345 (546)
T PRK08314 299 -------------------------LAE--------RDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQ 345 (546)
T ss_pred -------------------------ccc--------cCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccc
Confidence 000 01147899999999999999999998889999999999999877
Q ss_pred eeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc--C--CceecCc
Q 006047 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--D--GWFHTGD 501 (663)
Q Consensus 426 ~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--~--g~~~TGD 501 (663)
......... ...++|.|+++++++++|.+++ .+++.|+.|||+++|++++.||+++++.+.+.|. + +||+|||
T Consensus 346 ~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGD 422 (546)
T PRK08314 346 THSNPPDRP-KLQCLGIPTFGVDARVIDPETL--EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD 422 (546)
T ss_pred eecCCCcCC-CCCccCcccCCeEEEEEeCCCC--cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCC
Confidence 665543322 3478999999999999993334 4456678999999999999999999998888772 3 4999999
Q ss_pred EEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCC
Q 006047 502 IGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGV 578 (663)
Q Consensus 502 lg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~ 578 (663)
+|+++++|++++.||.+|+|++ +|++|+|.+||++|.++|+|.+++|++.++. +.++++|+++.+..
T Consensus 423 l~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~--------- 492 (546)
T PRK08314 423 LGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEAR--------- 492 (546)
T ss_pred EEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCC---------
Confidence 9999999999999999999997 7999999999999999999999999997654 67899999876420
Q ss_pred CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 579 NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. ...+.++++++ ..|+++++|+.+++++.. |+|.+||++|++|++....
T Consensus 493 -~~------------~~~~~l~~~~~-~~l~~~~~P~~~~~v~~i------P~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 493 -GK------------TTEEEIIAWAR-EHMAAYKYPRIVEFVDSL------PKSGSGKILWRQLQEQEKA 542 (546)
T ss_pred -CC------------CCHHHHHHHHH-HhcccCCCCcEEEEecCC------CCCCccceeHHHHHHHHhh
Confidence 00 00245566666 689999999999999665 7999999999999876543
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=542.76 Aligned_cols=517 Identities=18% Similarity=0.244 Sum_probs=413.5
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.|+.++|++++..+|+++|+++. +. +.+.+||+||.+++.++|.+|.+ .|+++||+|+++++|+++++++++|
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA 83 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFA 83 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 57999999999999999999864 21 24789999999999999999997 7999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++++++.++.+++.++++.++++++|+++.....+...... .+..+.++..+..................+|
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (576)
T PRK05620 84 VACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRAVVFIGPSDADSAAAHMPEGIKVYSY 162 (576)
T ss_pred HHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccEEEEecCcccccchhccccccccccH
Confidence 999999999999999999999999999999999998776655444332 2445556555432111100001112345567
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhh--hhhhhccccCCCCcEEEEcCChhhH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK--CLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~--~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.++++.... ........++++++++|||||||.||+|.++|+++........ ..+ .+..++++++.+|++|.
T Consensus 163 ~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~ 236 (576)
T PRK05620 163 EALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIYHV 236 (576)
T ss_pred HHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChHHh
Confidence 777764322 2223445779999999999999999999999999876554322 223 67889999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..++.......
T Consensus 237 ~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 294 (576)
T PRK05620 237 LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------- 294 (576)
T ss_pred hhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC----------------------
Confidence 999888888999999988753 89999999999999999999999988765321100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-----
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----- 433 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~----- 433 (663)
....++|.+++||+++++.+.+.+++.++.++++.||+||++..+.......
T Consensus 295 -----------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 351 (576)
T PRK05620 295 -----------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGE 351 (576)
T ss_pred -----------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccc
Confidence 0003699999999999999999999888999999999999987655433211
Q ss_pred --ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhh----------------hccc-cC
Q 006047 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT----------------KEVM-VD 494 (663)
Q Consensus 434 --~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~----------------~~~~-~~ 494 (663)
.....++|++.+++++++++ + +...+...++.|||+++|+.++.||+++++.+ ...+ .+
T Consensus 352 ~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~ 429 (576)
T PRK05620 352 ARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTAD 429 (576)
T ss_pred cccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccC
Confidence 11124789999999999998 4 55555556788999999999999999998877 2223 47
Q ss_pred CceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHH
Q 006047 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALER 571 (663)
Q Consensus 495 g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~ 571 (663)
|||+|||+|++++||.+++.||.+|+|+. +|++|+|.+||+.|.+||+|.+|+|++.+++ +.+++++++.++.
T Consensus 430 g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~--- 505 (576)
T PRK05620 430 GWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGI--- 505 (576)
T ss_pred CcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCC---
Confidence 89999999999999999999999999995 8999999999999999999999999997754 5788888876542
Q ss_pred HHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 572 WAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
... +...++|+++++ +.|++++.|+.|++++.. |+|.+||++|++|++++++.
T Consensus 506 ---------------~~~---~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~~------P~t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 506 ---------------EPT---RETAERLRDQLR-DRLPNWMLPEYWTFVDEI------DKTSVGKFDKKDLRQHLADG 558 (576)
T ss_pred ---------------Ccc---cccHHHHHHHHH-hhCccccCCeEEEEeccC------CCCCcccCcHHHHHHHHhcC
Confidence 000 112345566666 789999999999999665 79999999999999998864
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=536.76 Aligned_cols=507 Identities=25% Similarity=0.368 Sum_probs=424.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.++|.++++.+|+++|+... + +.+||+||++++.++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l 74 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF 74 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999875 4 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++..+++.+++++++++.+....+.+..... ..++.++..+..... .......+
T Consensus 75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~ 147 (521)
T PRK06187 75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-PTVRTVIVEGDGPAA------PLAPEVGE 147 (521)
T ss_pred HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhcc-CCccEEEEecCcccc------cccccccc
Confidence 99999999999999999999999999999999999988776655544332 455667766554311 01123455
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+.+++..... .........+++++++|||||||.||+|.+||.++..........+ ++..++++++.+|++|.+
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~ 221 (521)
T PRK06187 148 YEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH 221 (521)
T ss_pred HHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence 6666554332 2224456778999999999999999999999999999888877766 789999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 282 DRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
++...+.+++.|+++++++. ++..+++.++++++|.++++|+++..+.......
T Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------- 276 (521)
T PRK06187 222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------- 276 (521)
T ss_pred hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------
Confidence 99886679999999998876 8999999999999999999999999887533210
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCc-----c
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM-----S 435 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~-----~ 435 (663)
...++++|.+++||++++.++.+.+.+.+++++++.||+||++.+......... .
T Consensus 277 --------------------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~ 336 (521)
T PRK06187 277 --------------------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT 336 (521)
T ss_pred --------------------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence 001157999999999999999999999889999999999999876665544333 2
Q ss_pred ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEee
Q 006047 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 436 ~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
...++|.|++++.++|+| +++...+.+.|+.|||+++|+.++.||+++++.+.+.|.++||+|||+|+++++|++++.|
T Consensus 337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G 415 (521)
T PRK06187 337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD 415 (521)
T ss_pred cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence 457899999999999999 7776555544899999999999999999999999999989999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|++++ +|.+++|.+||+++.++++|.+++|++.+++ +.+++++++.++. + ...
T Consensus 416 R~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------------~--~~~ 474 (521)
T PRK06187 416 RIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGA------------------T--LDA 474 (521)
T ss_pred cccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCC------------------C--CCH
Confidence 99999996 8999999999999999999999999986543 5888888876532 0 001
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+.+.+++. ..++++..|..++++++. |+|++||++|++|+++|++
T Consensus 475 ----~~l~~~l~-~~l~~~~~p~~i~~v~~~------P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 475 ----KELRAFLR-GRLAKFKLPKRIAFVDEL------PRTSVGKILKRVLREQYAE 519 (521)
T ss_pred ----HHHHHHHH-HhccCCCCceEEEEccCC------CCCCCCCeeHHHHHHHHhc
Confidence 22333333 678899999999999665 8999999999999999875
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=532.17 Aligned_cols=476 Identities=20% Similarity=0.237 Sum_probs=393.3
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
+++.+.|+++++++||++|++.. + .++||.||.+++.++|.+|.+.|. +|++|+|+++|++++++++|||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 46889999999999999999764 2 569999999999999999999984 8999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++.++++.+++++++++......+.... ..++.++. +.
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~------------------~~ 125 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEE-------GRVIEIDE------------------WK 125 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhcc-------ceEEEehh------------------hh
Confidence 999999999999999999999999999999999986544332110 12222211 11
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 283 (663)
+...... ..........+++++++|||||||.||+|.++|.+++..+......+ ++.++|+++...|++|..++
T Consensus 126 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l 199 (487)
T PRK07638 126 RMIEKYL-PTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL 199 (487)
T ss_pred hhhhhcc-ccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence 1111111 11112223457789999999999999999999999999888776666 78899999999999998887
Q ss_pred HHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCC
Q 006047 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (663)
Q Consensus 284 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (663)
...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+...
T Consensus 200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 250 (487)
T PRK07638 200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----------------------------- 250 (487)
T ss_pred HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence 777888999999998876 89999999999999999999999998765200
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCccccCccC
Q 006047 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441 (663)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G 441 (663)
...+.+.++++|++++.++.+++++.+ ++.+++.||+||++.++............++|
T Consensus 251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G 310 (487)
T PRK07638 251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG 310 (487)
T ss_pred --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence 002455678889999999999999888 78999999999999876665543333457899
Q ss_pred ccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeecccee
Q 006047 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521 (663)
Q Consensus 442 ~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i 521 (663)
.|+++++++|+| +++. +++.|+.|||+++|+.++.||++++..+.+.+.+|||+|||+|++|++|++++.||.+|+|
T Consensus 311 ~~~~~~~~~i~d-~~g~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i 387 (487)
T PRK07638 311 RPFHNVQVRICN-EAGE--EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI 387 (487)
T ss_pred cccCCcEEEEEC-CCCC--CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence 999999999999 6664 4567899999999999999999999888777789999999999999999999999999999
Q ss_pred ecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHH
Q 006047 522 KLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGE 598 (663)
Q Consensus 522 ~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 598 (663)
++ +|++|+|.+||+++.++|+|.+|+|++.+++ +.++++|+.... .++
T Consensus 388 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~----------------------------~~~ 438 (487)
T PRK07638 388 LF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSAT----------------------------KQQ 438 (487)
T ss_pred Ee-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCC----------------------------HHH
Confidence 96 8999999999999999999999999997754 577888764221 133
Q ss_pred HHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 599 LSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 599 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
++++++ ..++++++|..+++++.. |+|++||++|++|++++.+
T Consensus 439 l~~~~~-~~l~~~~~p~~i~~v~~i------P~t~~GKv~r~~L~~~~~~ 481 (487)
T PRK07638 439 LKSFCL-QRLSSFKIPKEWHFVDEI------PYTNSGKIARMEAKSWIEN 481 (487)
T ss_pred HHHHHH-HHhhcccCCcEEEEeccc------CCCCcccccHHHHHHHHhc
Confidence 444444 578899999999998665 7999999999999887654
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-62 Score=557.63 Aligned_cols=477 Identities=17% Similarity=0.180 Sum_probs=387.8
Q ss_pred CCHHHHHHHHHHh--CCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 44 ESCWDVFRMAVER--NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 44 ~~l~~~l~~~a~~--~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
.|+.++|..++.. +||++|++.. ..+||+||+++++++|++|.+.|+++||+|+|+++|++++++++|
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4789999999886 7999999743 249999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|++|.++.+++.++++.++++++|++......+... .++ .
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~ 123 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E 123 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence 9999999999999999999999999999999999987543322110 000 0
Q ss_pred HHHHHhccc-ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhh-hhhhhccccCCCCcEEEEcCChhh
Q 006047 202 WDEFLQLGE-NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK-CLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~-~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
...++.... ..+.......+++++|++|||||||.||||.++|.++.+.+..+. ..+ .+..++++++..|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 198 (705)
T PRK06060 124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF 198 (705)
T ss_pred hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence 011111100 011112234568999999999999999999999999988876653 234 6788999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 280 IFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 280 ~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
..++.. ++.++..|+++++.+. ++..+...++++++|+++++|+++..+++....
T Consensus 199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------- 256 (705)
T PRK06060 199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------- 256 (705)
T ss_pred hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence 888754 6678999999998864 788889999999999999999999887652210
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCcc
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
...+++|.+++||+++++++.+.+.+.+ +.++++.||+||++..+....... .
T Consensus 257 -------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~ 310 (705)
T PRK06060 257 -------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W 310 (705)
T ss_pred -------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence 0014799999999999999999999888 589999999999986655443222 2
Q ss_pred ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEee
Q 006047 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 436 ~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
...++|+|+++++++|+| +++. +++.|+.|||||+|++++.||+++++.+.. .+|||+|||+|++++||+++++|
T Consensus 311 ~~~~iG~p~~~~~v~i~d-~~g~--~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G 385 (705)
T PRK06060 311 RLGTLGRVLPPYEIRVVA-PDGT--TAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC 385 (705)
T ss_pred CcCcccccCCCcEEEEEC-CCCC--CCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence 347899999999999999 6654 456789999999999999999998876432 57899999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++. +.++++|++..+.. .+.
T Consensus 386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-----------------~~~--- 444 (705)
T PRK06060 386 RADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT-----------------IDG--- 444 (705)
T ss_pred ccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC-----------------cCh---
Confidence 99999997 8999999999999999999999999987654 58899998765320 011
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
...+.++++++ +.|+.|++|..|++++.. |+|++||++|++|++.+.
T Consensus 445 -~~~~~i~~~l~-~~L~~~~~P~~i~~v~~i------P~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 445 -SVMRDLHRGLL-NRLSAFKVPHRFAVVDRL------PRTPNGKLVRGALRKQSP 491 (705)
T ss_pred -HHHHHHHHHHH-HhCCCCcCCcEEEEeecC------CCCcchhhHHHHHHhhcc
Confidence 12234555565 689999999999999665 799999999999998764
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=539.80 Aligned_cols=518 Identities=20% Similarity=0.246 Sum_probs=393.0
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|.+.++.+|+++|+.+. + .++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 46899999999999999999864 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcC----CCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT----EHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
+++|++++|+++.++.+++.++|+.++++++|++++....+........ .....++.++...... ......
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 159 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEE 159 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccc
Confidence 9999999999999999999999999999999998876654443322110 0112344443211000 001123
Q ss_pred EeHHHHHhcccccCCC----CCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcC
Q 006047 200 YSWDEFLQLGENKQFD----LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 275 (663)
.++.++.......... .....++++++++|||||||.||+|.++|+++..........+ .....++++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~ 234 (579)
T PLN03102 160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWTL 234 (579)
T ss_pred cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEecC
Confidence 3455555433221111 1234578999999999999999999999999755443332222 466778899999
Q ss_pred ChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 006047 276 PLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (663)
Q Consensus 276 p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
|++|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+.......
T Consensus 235 pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 297 (579)
T PLN03102 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS----------------- 297 (579)
T ss_pred ChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccC-----------------
Confidence 99999998877777888888887765 888999999999999999999999988653211000
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-
Q 006047 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE- 433 (663)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~- 433 (663)
..++++.+++||+++++.+.+++++ +|.++++.||+||+++.+.......
T Consensus 298 ----------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~ 348 (579)
T PLN03102 298 ----------------------------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDE 348 (579)
T ss_pred ----------------------------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccc
Confidence 0035678999999999999998876 6999999999999986543321110
Q ss_pred ------------ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCc
Q 006047 434 ------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGD 501 (663)
Q Consensus 434 ------------~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGD 501 (663)
....+..+.+++++ .+.+.+.+...+.+.++.|||+|+|+.++.||+++++.+.+.|.+|||+|||
T Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGD 426 (579)
T PLN03102 349 WNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGD 426 (579)
T ss_pred cccCCcccccccccCCCcccccccce--EEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecCc
Confidence 00112333344444 4444233343444334789999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCC
Q 006047 502 IGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGV 578 (663)
Q Consensus 502 lg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~ 578 (663)
+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||.|.+++|++.+++ +.++|+|++.++....
T Consensus 427 lg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~------- 498 (579)
T PLN03102 427 VGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK------- 498 (579)
T ss_pred eEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc-------
Confidence 9999999999999999999996 8999999999999999999999999998764 5899999887643100
Q ss_pred CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 579 NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
.+.+.+... -.++++++++ ..|+.|++|..+++++.. |+|++||++|++|+++++++.
T Consensus 499 ~~~~~~~~~-------~~~~l~~~~~-~~L~~~~~P~~i~~~~~~------P~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 499 EDRVDKLVT-------RERDLIEYCR-ENLPHFMCPRKVVFLQEL------PKNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred ccccccccc-------cHHHHHHHHH-hhcccccCCeEEEEcccC------CCCCcccccHHHHHHHHHHhh
Confidence 000000000 1245666666 679999999999999666 799999999999999987644
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=535.65 Aligned_cols=499 Identities=20% Similarity=0.231 Sum_probs=404.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
+....++.++|+++++.+|+++|++.. + +.+||.||++++.++|..|.+.|+++|++|+++++|+++++++
T Consensus 17 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~ 87 (542)
T PRK06155 17 PPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDV 87 (542)
T ss_pred CccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHH
Confidence 345678999999999999999999864 3 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
+|||+++|++++|+++.++.+++..+++.+++++++++.+....+....... ..++.++.++...... ....
T Consensus 88 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~--- 159 (542)
T PRK06155 88 FLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASVS----VPAG--- 159 (542)
T ss_pred HHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-cCcceEEEecCccccc----cccc---
Confidence 9999999999999999999999999999999999999987766554433221 2345566555432100 0000
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
+....+. ............++++++++|||||||.||+|.++|.++..........+ ++.+++++++.+|++|
T Consensus 160 ~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~ 232 (542)
T PRK06155 160 WSTAPLP--PLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLFH 232 (542)
T ss_pred cchhhhc--ccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHHH
Confidence 0001111 00111122344678999999999999999999999999988877666666 7889999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 280 IFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 280 ~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
..++...+.++..|+++++.+. ++..+++.|+++++|.++++|+++..+.+.....
T Consensus 233 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----------------------- 289 (542)
T PRK06155 233 TNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE----------------------- 289 (542)
T ss_pred HHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-----------------------
Confidence 9999888889999999988876 8999999999999999999999888775421100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccC
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (663)
....++++.++.|| +++.+.+.+++.++.++++.||+||++..+..... ....+
T Consensus 290 ----------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~ 343 (542)
T PRK06155 290 ----------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRPG 343 (542)
T ss_pred ----------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCCC
Confidence 00114788887666 56888888888889999999999999877654332 22347
Q ss_pred ccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC---cccccccCChhhhhccccCCceecCcEEEEcCCCcEEEee
Q 006047 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 439 ~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
++|.|+++++++|+| +++. +++.|+.|||+++|+ .++.||+++++.+.+.|.++||+|||+|++++||++++.|
T Consensus 344 ~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~G 420 (542)
T PRK06155 344 SMGRLAPGFEARVVD-EHDQ--ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVD 420 (542)
T ss_pred CcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEe
Confidence 899999999999998 6654 455679999999998 6899999999999888899999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|+|++ +|++|+|.+||+++.++|+|.+|+|++.+++ +.+.+++++..+. ...
T Consensus 421 R~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~--------------------~~~- 478 (542)
T PRK06155 421 RIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGT--------------------ALE- 478 (542)
T ss_pred cCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCC--------------------CCC-
Confidence 99999996 8999999999999999999999999987753 5778888776532 000
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
..+++++++ ..|+.+++|..|.+++.. |+|++||++|++|++++
T Consensus 479 ---~~~~~~~~~-~~l~~~~~P~~i~~~~~i------P~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 479 ---PVALVRHCE-PRLAYFAVPRYVEFVAAL------PKTENGKVQKFVLREQG 522 (542)
T ss_pred ---HHHHHHHHH-hhCcCccCCcEEEEeccC------CCCcccceeHHHHHhhc
Confidence 134455555 679999999999998665 79999999999999876
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=535.27 Aligned_cols=511 Identities=22% Similarity=0.255 Sum_probs=406.6
Q ss_pred ecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 006047 28 RSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107 (663)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~ 107 (663)
|...-.+++... .++.+.|.++++.+|+++|++.. +...+..+.+||+||++++.++|.+|.+.|+++|++|+
T Consensus 10 ~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~ 82 (538)
T TIGR03208 10 RAASKAAGLWRD----RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVS 82 (538)
T ss_pred hhhhhhcCcccc----CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 334444455542 58999999999999999999864 22223457899999999999999999999999999999
Q ss_pred EEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecC
Q 006047 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSK 183 (663)
Q Consensus 108 i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~ 183 (663)
++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++++.... ..........+..+.++..+.
T Consensus 83 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
T TIGR03208 83 FQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG 162 (538)
T ss_pred EECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecC
Confidence 9999999999999999999999999999999999999999999999999876421 111111111234455665543
Q ss_pred CChhhHHHHhhcCcEEEeHHHHHhcccccC-------CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhh
Q 006047 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQ-------FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256 (663)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~ 256 (663)
... .+++.++....... .......++++++++|||||||.||+|.++|+++...+.....
T Consensus 163 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~ 229 (538)
T TIGR03208 163 DGD-------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE 229 (538)
T ss_pred CCC-------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence 211 12333332111000 1112356799999999999999999999999999998888776
Q ss_pred hhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHH
Q 006047 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334 (663)
Q Consensus 257 ~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 334 (663)
.+ ++..+|++++.+|++|..++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+.+..+..++..
T Consensus 230 ~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~ 304 (538)
T TIGR03208 230 RL-----ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE 304 (538)
T ss_pred hc-----CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc
Confidence 66 6788999999999999988765 6778999999988776 899999999999999999999999887653321
Q ss_pred HHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCcee
Q 006047 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414 (663)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~ 414 (663)
.. ...+++|.+++||+++++.+.+.+.+.++++++
T Consensus 305 ~~---------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~ 339 (538)
T TIGR03208 305 SG---------------------------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIV 339 (538)
T ss_pred cC---------------------------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEE
Confidence 10 011579999999999999999999988899999
Q ss_pred ecccccccccceeccCCCCc-cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc
Q 006047 415 QGYGLTETCAGTFVSLPNEM-SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV 493 (663)
Q Consensus 415 ~~yG~tE~~~~~~~~~~~~~-~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 493 (663)
+.||+||++.+......... ....++|+|++++++++++ +++. +++.|+.|||+++|+.++.||+++++.+.. ..
T Consensus 340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~ 415 (538)
T TIGR03208 340 SAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLNST-DA 415 (538)
T ss_pred eeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCC--CCcCCCCcEEEEecCcccccccCCcccccc-cC
Confidence 99999999877655443221 2235789999999999998 6654 456779999999999999999999887643 36
Q ss_pred CCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHH
Q 006047 494 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALE 570 (663)
Q Consensus 494 ~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~ 570 (663)
+|||+|||+|+++++|+++++||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++ +.++++|++..+.
T Consensus 416 ~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~-- 492 (538)
T TIGR03208 416 EGWFDTGDLAFQDAEGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGC-- 492 (538)
T ss_pred CCceeccceEEECCCCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCC--
Confidence 899999999999999999999999999995 8999999999999999999999999997654 5789999887532
Q ss_pred HHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 571 RWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
. .. .+++.+++.+..++.++.|+.++++++. |+|++||++|++|+
T Consensus 493 ----------------~--~~----~~~l~~~~~~~~l~~~~~P~~i~~v~~i------P~t~~gKv~r~~L~ 537 (538)
T TIGR03208 493 ----------------T--LD----FAAMVAFLKAQKVALQYIPERLEVVDAL------PATPAGKIQKFRLR 537 (538)
T ss_pred ----------------C--CC----HHHHHHHHHhcchhhccCCcEEEEeccC------CCCCccccchHhhc
Confidence 0 00 1234445543478899999999998765 79999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=533.92 Aligned_cols=501 Identities=23% Similarity=0.312 Sum_probs=414.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
.+.++.++|.+.++.+|+++|+++. + +.+||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l 73 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL 73 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999864 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++..+++.++++++++++........... ....++.++......... ......+
T Consensus 74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~ 146 (513)
T PRK07656 74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATT-RLPALEHVVICETEEDDP------HTEKMKT 146 (513)
T ss_pred HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHh-ccCCccEEEEEcCccccc------Ccccccc
Confidence 999999999999999999999999999999999999876655444322 223445555544322110 0012245
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
|+++...... ........++++++++|||||||.||+|.++|.++...+......+ ++++++++++.+|++|.+
T Consensus 147 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 220 (513)
T PRK07656 147 FTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHVF 220 (513)
T ss_pred HHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHHH
Confidence 6666544322 2233456789999999999999999999999999998888877666 788999999999999999
Q ss_pred HHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 282 DRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 282 g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 221 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------- 277 (513)
T PRK07656 221 GYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----------------------- 277 (513)
T ss_pred HHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC-----------------------
Confidence 9876 6778999999988765 89999999999999999999999999865321100
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCC-ceeecccccccccceeccCCCCccc--
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPNEMSM-- 436 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~~~~-- 436 (663)
...+++|.+++||+++++++.+.+++.++. .+++.||+||++++...+.......
T Consensus 278 ----------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 335 (513)
T PRK07656 278 ----------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTV 335 (513)
T ss_pred ----------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccccccc
Confidence 011589999999999999999999998988 9999999999988777665443322
Q ss_pred cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc-CCceecCcEEEEcCCCcEEEee
Q 006047 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 437 ~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~~~G~l~~~G 515 (663)
..++|.|+++++++++| +++. +++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|+++++|.++++|
T Consensus 336 ~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~G 412 (513)
T PRK07656 336 AGTIGTAIAGVENKIVN-ELGE--EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVD 412 (513)
T ss_pred CCCccccCCCcEEEEEC-CCCC--CCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEe
Confidence 57899999999999998 6654 456779999999999999999999988888774 8999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|+|++ +|.+++|.+||+.|.++++|.+++|++.+++ +.++++|++..+. . .+
T Consensus 413 R~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~----------~-------~~---- 470 (513)
T PRK07656 413 RKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA----------E-------LT---- 470 (513)
T ss_pred cccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC----------C-------CC----
Confidence 99999997 8999999999999999999999999986643 5788888876421 0 01
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
.+++.++++ ..|++++.|..+++++.. |+|++||++|++|++
T Consensus 471 ---~~~l~~~~~-~~l~~~~~p~~i~~v~~i------P~t~~gK~~r~~l~~ 512 (513)
T PRK07656 471 ---EEELIAYCR-EHLAKYKVPRSIEFLDEL------PKNATGKVLKRALRE 512 (513)
T ss_pred ---HHHHHHHHH-hhcccccCCCEEEEecCC------CCCCccceeHHHHhc
Confidence 123455555 679999999999999665 799999999999975
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-61 Score=534.27 Aligned_cols=507 Identities=19% Similarity=0.258 Sum_probs=405.6
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|+++++.+|++.++.+. . .++++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRR---V--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEee---c--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 36899999999999998888654 1 223467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++..+++.+++++++++.+..+.+.+..... ..++.++........ ........+++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 158 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC-PNVKGWVAMTDAAHL-----PAGSTPLLCYE 158 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhC-CCceEEEEEccCCcc-----ccCCcccccHH
Confidence 999999999999999999999999999999999987766544433222 345555554432110 01113345666
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhh--hhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG--VKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~--~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
++...... ........++++++++|||||||.||+|.+||++++..... +...+ ++..+|++++..|++|.+
T Consensus 159 ~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (539)
T PRK07008 159 TLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVN 232 (539)
T ss_pred HHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhh
Confidence 66543322 12233456789999999999999999999999998754322 22233 677899999999999988
Q ss_pred HHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 282 DRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
++...+.++..|+++++.+. ++..+++.++++++|++.++|+.+..++++.....
T Consensus 233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------- 289 (539)
T PRK07008 233 AWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG----------------------- 289 (539)
T ss_pred hHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----------------------
Confidence 87777778999999998754 89999999999999999999999998875322110
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC------
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE------ 433 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~------ 433 (663)
...+++|.++++|+++++.+.+.+.+.++.++++.||+||++..+.......
T Consensus 290 ----------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~ 347 (539)
T PRK07008 290 ----------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLP 347 (539)
T ss_pred ----------------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCC
Confidence 0115799999999999999999998889999999999999986544332110
Q ss_pred ----ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCC
Q 006047 434 ----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDG 509 (663)
Q Consensus 434 ----~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G 509 (663)
.....++|.|+|+++++|+| +++...+.+.++.|||+++|+.++.||++++. ..+.+|||+|||+|++++||
T Consensus 348 ~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg 423 (539)
T PRK07008 348 LDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADG 423 (539)
T ss_pred chhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCC
Confidence 11135789999999999999 77776666555789999999999999999873 34558999999999999999
Q ss_pred cEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhh
Q 006047 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLC 586 (663)
Q Consensus 510 ~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 586 (663)
++++.||.+|+|+. +|.+|+|.+||+++..+|+|.++++++.++. +.++++|+..++.
T Consensus 424 ~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------------ 484 (539)
T PRK07008 424 FMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGA------------------ 484 (539)
T ss_pred cEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCC------------------
Confidence 99999999999995 8999999999999999999999999997753 5778888766532
Q ss_pred cChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 587 ENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 587 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
. ...++++++++ ..+++|+.|..|++++.. |+|.+||++|++|++++.+
T Consensus 485 ~------~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 485 E------VTREELLAFYE-GKVAKWWIPDDVVFVDAI------PHTATGKLQKLKLREQFRD 533 (539)
T ss_pred c------cCHHHHHHHHH-hhcccccCCeEEEEecCC------CCCCccceeHHHHHHHHHh
Confidence 0 01234555555 678999999999998665 7999999999999998865
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=532.89 Aligned_cols=504 Identities=21% Similarity=0.278 Sum_probs=404.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.++|+++++++|+++|+++. +. .++++.+||.||+++++++|.+|.+.|+++||+|+++++|+.++++++|
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l 80 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3468999999999999999999876 43 3456789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++++++.++.+++..+++.++++.++++.+..+.+.+.........+.++........ .....+
T Consensus 81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 152 (517)
T PRK08008 81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSS 152 (517)
T ss_pred HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccC
Confidence 999999999999999999999999999999999999887765554443333445556555442110 012234
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
++++...............++++++++|||||||.||+|.++|.++........... .+..++++++.+|++|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~ 227 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHID 227 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHH
Confidence 444443322211223345678999999999999999999999999986543322221 467899999999999987
Q ss_pred HHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 282 DRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 282 g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
+... ++.++..|+++++.+. ++..+++.++++++|++.++|++++.+......
T Consensus 228 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------- 282 (517)
T PRK08008 228 CQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPS------------------------- 282 (517)
T ss_pred HHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCc-------------------------
Confidence 7655 6778999999999876 899999999999999999999998877531100
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCc
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~ 439 (663)
+.. ....++.+.+++ ++++.....+.+.++.++++.||+||++..+............+
T Consensus 283 ---------~~~-----------~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 341 (517)
T PRK08008 283 ---------AND-----------RQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPS 341 (517)
T ss_pred ---------ccc-----------ccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCc
Confidence 000 003567776654 78888888888888999999999999987665544444444578
Q ss_pred cCccccCeEEEEeecCCCccccCCCCCCCeEEEcc---CcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEee
Q 006047 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG---STVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 440 ~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g---~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
+|.|+++++++++| +++. +++.|+.|||+++| ++++.||+++++.+.+.| .+|||+|||+|+++++|+++++|
T Consensus 342 ~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G 418 (517)
T PRK08008 342 IGRPGFCYEAEIRD-DHNR--PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVD 418 (517)
T ss_pred cccCCCCcEEEEEC-CCCC--CCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEee
Confidence 99999999999999 6654 55567999999998 689999999999999888 68999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|+|++ +|++++|.+||+++.+++.|.+++|++.++. +.++++|+++.+. .
T Consensus 419 R~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~------------------~----- 474 (517)
T PRK08008 419 RRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE------------------T----- 474 (517)
T ss_pred cccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCC------------------C-----
Confidence 99999996 8999999999999999999999999997754 5789999887632 0
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
.-.++|.++++ ..++++++|..+.+++.. |+|++||++|+.|+
T Consensus 475 -~~~~~l~~~~~-~~l~~~~~P~~~~~v~~i------P~t~~gK~~r~~l~ 517 (517)
T PRK08008 475 -LSEEEFFAFCE-QNMAKFKVPSYLEIRKDL------PRNCSGKIIKKNLK 517 (517)
T ss_pred -CCHHHHHHHHH-hhcccccCCcEEEEeccC------CCCCccceehhhcC
Confidence 00234555555 678999999999998655 79999999999874
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-61 Score=531.83 Aligned_cols=506 Identities=24% Similarity=0.316 Sum_probs=413.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.+.++.+|+++|++.. + +.+||+||++++.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a 80 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA 80 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 477999999999999999999865 3 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++..+.+++..+++.+++++++++......+.+..+... ...+........ .........+
T Consensus 81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~ 152 (523)
T PRK08316 81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLDF 152 (523)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhhH
Confidence 99999999999999999999999999999999999887766654433221 111111110000 0011223445
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
+++....... ........+++++++|||||||.||+|.+||.+++.........+ ++.++++++..+|++|..+
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g 226 (523)
T PRK08316 153 ADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ 226 (523)
T ss_pred HHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence 5554433221 233456778999999999999999999999999998887766666 7889999999999999999
Q ss_pred HHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 283 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
+.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....
T Consensus 227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------- 280 (523)
T PRK08316 227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF-------------------------- 280 (523)
T ss_pred HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc--------------------------
Confidence 866 5556899999999865 999999999999999999999999887642110
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC-ccccC
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-MSMIG 438 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~ 438 (663)
. ...++++|.+++||+.++.++.+.+++.+ +.++++.||+||++.++....... ....+
T Consensus 281 -----------~--------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 341 (523)
T PRK08316 281 -----------D--------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG 341 (523)
T ss_pred -----------c--------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence 0 01115799999999999999999999877 789999999999987766544322 23347
Q ss_pred ccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeecc
Q 006047 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKK 518 (663)
Q Consensus 439 ~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~ 518 (663)
++|+|+++++++|+| +++. +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||.+++.||.+
T Consensus 342 ~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~ 418 (523)
T PRK08316 342 SAGRPVLNVETRVVD-DDGN--DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKK 418 (523)
T ss_pred CcccCCCCcEEEEEc-CCCC--CCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccc
Confidence 899999999999999 6664 4556799999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHH
Q 006047 519 NIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFI 595 (663)
Q Consensus 519 d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 595 (663)
|+|++ +|++|+|.+||+.+.++++|.+++|++.+++ +.++++++++++. ....
T Consensus 419 ~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~--- 474 (523)
T PRK08316 419 DMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGA--------------------TVTE--- 474 (523)
T ss_pred cEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCC--------------------CCCH---
Confidence 99996 8999999999999999999999999997654 5788888887532 0011
Q ss_pred HHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 596 LGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 596 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
+.+.++++ ..|++++.|..+++++.. |+|++||++|++|+++|.+.++
T Consensus 475 -~~l~~~~~-~~l~~~~~p~~i~~v~~~------p~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 475 -DELIAHCR-ARLAGFKVPKRVIFVDEL------PRNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred -HHHHHHHH-HhcccCCCCcEEEEecCC------CCCCccceeHHHHHHHHHhhcc
Confidence 22333444 578899999999999665 7999999999999999987654
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=547.73 Aligned_cols=509 Identities=17% Similarity=0.164 Sum_probs=385.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|.++++.+|+++|+++....+...+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~ 96 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF 96 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence 4457899999999999999999987511011223457899999999999999999987 899999999999999999999
Q ss_pred HHHHhcCCeEeec-cCCCC--hHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcC-CCCcEEEEecCCChhhHHHHhhcC
Q 006047 121 EACNALGLHCVPL-YDTLG--AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 121 lA~~~~G~v~v~l-~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
|||+++|++++|+ ++..+ .+++.++++.++++++|++++....+........ .....++.++...
T Consensus 97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 165 (631)
T PRK07769 97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP----------- 165 (631)
T ss_pred HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccc-----------
Confidence 9999999999999 45554 6789999999999999998876554333221110 1112333322110
Q ss_pred cEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCC
Q 006047 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 276 (663)
+.. ..........++++++++|||||||.||||++||+++...+......+ ++..++++++++|
T Consensus 166 -------~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P 229 (631)
T PRK07769 166 -------DEV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSWLP 229 (631)
T ss_pred -------ccc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEeCC
Confidence 000 001112234678999999999999999999999999998887776665 6788999999999
Q ss_pred hhhHHHHHHHHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCC---cEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 006047 277 LAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKP---TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (663)
Q Consensus 277 ~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~---t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (663)
++|.+|+...+.+++.|+++++++. ++..+++.++++++ +.+.++|.++..+....... ...
T Consensus 230 l~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~--~~~-------- 299 (631)
T PRK07769 230 FFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLP--KDG-------- 299 (631)
T ss_pred CcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccc--hhc--------
Confidence 9999999887777888999888742 78889999999886 78999999887664310000 000
Q ss_pred HHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc---C---Cceeeccccccc
Q 006047 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA---C---AHVLQGYGLTET 422 (663)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~---~~v~~~yG~tE~ 422 (663)
.. ...++++|.+++||+++++++.+.+.+.+ | ..+++.||+||+
T Consensus 300 ----------------------~~--------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 349 (631)
T PRK07769 300 ----------------------EP--------PLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEA 349 (631)
T ss_pred ----------------------cc--------CcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhh
Confidence 00 01125899999999999999999998876 3 359999999999
Q ss_pred ccceeccCCCCc--------------------------cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCc
Q 006047 423 CAGTFVSLPNEM--------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST 476 (663)
Q Consensus 423 ~~~~~~~~~~~~--------------------------~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~ 476 (663)
+..+........ ....++|+|.++++++|+|.+++ .+++.|+.|||+++||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g--~~~~~ge~GEl~v~gp~ 427 (631)
T PRK07769 350 TLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETA--SELPDGQIGEIWLHGNN 427 (631)
T ss_pred eeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCC--cCCCCCCEEEEEecCCC
Confidence 765554332110 01247899999999999983344 34567899999999999
Q ss_pred ccccccCChhhhhcccc------------------CCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHH
Q 006047 477 VFSGYYKREDLTKEVMV------------------DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY 538 (663)
Q Consensus 477 ~~~gy~~~~~~~~~~~~------------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l 538 (663)
++.||+++++.+++.|. +|||+|||+|+++ ||+|+++||.+|+|++ +|++|+|.|||++|
T Consensus 428 v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l 505 (631)
T PRK07769 428 IGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTA 505 (631)
T ss_pred ccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHH
Confidence 99999999999988873 3899999999995 9999999999999996 89999999999999
Q ss_pred hc-CcCcce--EEEEeeCC----------------------CCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 539 AL-VSAIDS--VWVYGNSF----------------------ESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 539 ~~-~~~V~~--~~v~~~~~----------------------~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
.+ ||.|.+ |+|++.++ .+.++++|++.++. .....
T Consensus 506 ~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~-------------------~~~~~- 565 (631)
T PRK07769 506 QEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGA-------------------HKLDP- 565 (631)
T ss_pred HhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcc-------------------ccccH-
Confidence 85 899998 88988776 24688888877532 00011
Q ss_pred HHHHHHHHHHHHcCCCC-cc-ceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 594 FILGELSRVAKEKKLKG-FE-FIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~-~~-~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
++|.++++ ..|+. ++ .|+.+.+++. +++|+|++|||+|++|++.|.+.
T Consensus 566 ---~~l~~~~~-~~l~~~~~~~p~~~~~v~~----~~lP~t~~GKi~r~~l~~~~~~~ 615 (631)
T PRK07769 566 ---QPIADDIR-AAIAVRHGVTVRDVLLVPA----GSIPRTSSGKIARRACRAAYLDG 615 (631)
T ss_pred ---HHHHHHHH-HHHHHHcCCCccEEEEECC----CccccCCCcHHHHHHHHHHHHcC
Confidence 23333333 33443 45 4778888852 12389999999999999988653
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=530.51 Aligned_cols=494 Identities=17% Similarity=0.200 Sum_probs=397.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++.+|+++|++.. + +.+||+||.++++++|.+|.+.|+++|++|+++++|++++++++||
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 92 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA 92 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 567999999999999999999753 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
|+++|++++++++..+.+++.++++.+++++++++..... ...+......+.++.++........
T Consensus 93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 161 (527)
T TIGR02275 93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE----------- 161 (527)
T ss_pred HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc-----------
Confidence 9999999999999999999999999999999999875421 1111111112334444443321100
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
......+.... .........++++++++|||||||.||+|.+||.++...+......+ .++.+|++++.+|++
T Consensus 162 -~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~ 234 (527)
T TIGR02275 162 -AELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA 234 (527)
T ss_pred -chhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence 01111111111 11223345778999999999999999999999999998888766665 788899999999999
Q ss_pred hHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------- 295 (527)
T TIGR02275 235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR------------------- 295 (527)
T ss_pred hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence 9999864 5677999999988765 89999999999999999999999988765322110
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
...+++|.+++||+++++++.+.+.+.++.++++.||+||++............
T Consensus 296 --------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 349 (527)
T TIGR02275 296 --------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI 349 (527)
T ss_pred --------------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence 011479999999999999999999998999999999999975433222111122
Q ss_pred ccCccCcccc-CeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 436 MIGTVGPPVP-NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 436 ~~~~~G~p~~-~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...++|+|++ +++++++| +++. +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|++++
T Consensus 350 ~~~~~G~~~~~~~~v~i~d-~~g~--~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~ 426 (527)
T TIGR02275 350 IFTTQGRPMSPDDEVRVVD-DHGN--PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV 426 (527)
T ss_pred ccccCCCCCCCCceEEEEC-CCCC--CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence 3468899995 88999998 6554 45578999999999999999999999998888 689999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.+|+|++ +|++|+|.+||++|.+||+|++|+|++.+++ +.++++|+++++. .
T Consensus 427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~------------------~--- 484 (527)
T TIGR02275 427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA------------------L--- 484 (527)
T ss_pred Eecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCC------------------C---
Confidence 9999999995 8999999999999999999999999998754 5788998876531 0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
..++|++++++..++.+++|..+.+++.. |+|++||++|++|+
T Consensus 485 ----~~~~l~~~l~~~~l~~~~~P~~i~~v~~i------P~t~sGKv~r~~L~ 527 (527)
T TIGR02275 485 ----KAAQLRRFLRERGLAEYKLPDRVEFIDSL------PLTAVGKIDKKALR 527 (527)
T ss_pred ----CHHHHHHHHHhCCCccccCCCEEEEeccC------CCCCccceeHHhcC
Confidence 01345556654469999999999999665 89999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=531.05 Aligned_cols=505 Identities=20% Similarity=0.255 Sum_probs=408.0
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|+.+++.+||++|++.. ++ +.+||+||+++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57999999999999999999754 33 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCC-----hhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK-----IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~-----~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
+++|++++|+++..+.+++..+++.++++++++++.. .+.+...... ...++.++.++..... ..
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~ 164 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQ-LPQLQQIVGVDKLAPA---------TS 164 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhh-CCCCcEEEEeCCcCCC---------cC
Confidence 9999999999999999999999999999999997642 1222222221 2344556665543211 11
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
..++.+++...... ........+++++++|||||||.||+|.++|.+++.....+...+ ++.+++++++.+|++
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~ 238 (547)
T PRK06087 165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG 238 (547)
T ss_pred ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence 22455555433221 122345678999999999999999999999999998877766655 788999999999999
Q ss_pred hHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 279 HIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+.+..+++.....
T Consensus 239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~--------------------- 297 (547)
T PRK06087 239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ--------------------- 297 (547)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------
Confidence 9999865 6777999999998876 8999999999999999999888877766432110
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-cc
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MS 435 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~ 435 (663)
...++++|.+++||+++++++.+.+.+. ++++++.||+||++.......... ..
T Consensus 298 ------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~ 352 (547)
T PRK06087 298 ------------------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR 352 (547)
T ss_pred ------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence 0112579999999999999998888764 999999999999987765543322 12
Q ss_pred ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEe
Q 006047 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKII 514 (663)
Q Consensus 436 ~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~ 514 (663)
...++|.|++++.++++| +++. +++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||+|+++++|+++++
T Consensus 353 ~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~ 429 (547)
T PRK06087 353 FMHTDGYAAAGVEIKVVD-EARK--TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT 429 (547)
T ss_pred cCCcCCccCCCceEEEEc-CCCC--CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence 235789999999999998 6664 45677999999999999999999999888877 6799999999999999999999
Q ss_pred eeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHH
Q 006047 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKA 591 (663)
Q Consensus 515 GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (663)
||.+|+|+. +|++|+|.+||+.|..+|+|.+++|++.+++ +.++++|++.... ... .
T Consensus 430 GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~------------------~~~-~ 489 (547)
T PRK06087 430 GRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPH------------------HSL-T 489 (547)
T ss_pred ecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCC------------------CCC-C
Confidence 999999995 8999999999999999999999999997654 5788888876421 000 0
Q ss_pred HHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 592 KEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 592 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
.+++.+++.+..++++++|..|.+++.. |+|.+||++|+.|++++.+.+.
T Consensus 490 ----~~~~~~~~~~~~l~~~~~P~~i~~v~~i------P~t~sGK~~r~~l~~~~~~~~~ 539 (547)
T PRK06087 490 ----LEEVVAFFSRKRVAKYKYPEHIVVIDKL------PRTASGKIQKFLLRKDIMRRLT 539 (547)
T ss_pred ----HHHHHHHHHhccccccCCCeEEEEeccC------CCCCCCcCcHHHHHHHHHHHhh
Confidence 1234444433689999999999999665 7999999999999998877653
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=530.49 Aligned_cols=501 Identities=21% Similarity=0.252 Sum_probs=402.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..|+.++|...++++|+++|++.. + +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus 6 ~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA 76 (528)
T PRK07470 6 VMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFA 76 (528)
T ss_pred CCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467999999999999999999764 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++++++.++.+++..+++.++++.++++++........... ......++.+.... ...++
T Consensus 77 ~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~ 143 (528)
T PRK07470 77 AFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAA-SPDLTHVVAIGGAR------------AGLDY 143 (528)
T ss_pred HHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhh-CCcCceEEEeCCCc------------ccccH
Confidence 999999999999999999999999999999999998765443322211 12334555544321 12345
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
.+++..............++++++++|||||||.||+|.++|.++...+......+ ..+...+|+++..+|++|.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~ 220 (528)
T PRK07470 144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGAG 220 (528)
T ss_pred HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHHH
Confidence 66554432222333455778999999999999999999999999876554422221 124578899999999999988
Q ss_pred HHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
+..++ .++.|++.++.+. ++..+++.|+++++|+++++|+.+..+.+....
T Consensus 221 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------- 274 (528)
T PRK07470 221 IHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV------------------------- 274 (528)
T ss_pred HHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-------------------------
Confidence 86544 5677777766642 889999999999999999999999887542110
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCC-------
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN------- 432 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~------- 432 (663)
. ....+++|.+++||+++++...+.+.+.++..+++.||+||+++.+......
T Consensus 275 ------------~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 334 (528)
T PRK07470 275 ------------D--------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDG 334 (528)
T ss_pred ------------C--------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccccc
Confidence 0 0112589999999999999999999888899999999999998765543221
Q ss_pred CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEE
Q 006047 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLK 512 (663)
Q Consensus 433 ~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~ 512 (663)
.....+++|.|+++++++++| +++. +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|+++++|+++
T Consensus 335 ~~~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~ 411 (528)
T PRK07470 335 PDARIGTCGFERTGMEVQIQD-DEGR--ELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLY 411 (528)
T ss_pred ccceeeccCcccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEE
Confidence 112247889999999999998 6665 4567799999999999999999999999888899999999999999999999
Q ss_pred EeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcCh
Q 006047 513 IIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENP 589 (663)
Q Consensus 513 ~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (663)
+.||.+|+|++ +|++|+|.+||+.|.++++|.+|+|++.+++ ..+++++++.++. .
T Consensus 412 ~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~-- 470 (528)
T PRK07470 412 ITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGA------------------P-- 470 (528)
T ss_pred EeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCC------------------C--
Confidence 99999999996 8999999999999999999999999997654 4678888776531 0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 590 KAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 590 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
... +.++++++ ..|+++++|..+++++.. |+|++||++|+.|++++.+.
T Consensus 471 ~~~----~~~~~~l~-~~l~~~~~P~~~~~~~~i------P~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 471 VDE----AELLAWLD-GKVARYKLPKRFFFWDAL------PKSGYGKITKKMVREELEER 519 (528)
T ss_pred CCH----HHHHHHHH-HhhhcCCCCcEEEEeccC------CCCCcccccHHHHHHHHHhc
Confidence 001 23444454 678899999999988665 79999999999999887653
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=530.22 Aligned_cols=503 Identities=23% Similarity=0.292 Sum_probs=414.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
-+|+.+.|.+++..+|+++|+... + +.+||.||.+.++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus 16 ~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a 86 (542)
T PRK07786 16 RQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLA 86 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999865 3 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++..+++.+++++++++......+.... ...+..+.++.+.+... ....++
T Consensus 87 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~ 155 (542)
T PRK07786 87 ANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVR-DIVPLLSTVVVAGGSSD----------DSVLGY 155 (542)
T ss_pred HHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhh-hccCccceEEEecCCCc----------ccccCH
Confidence 9999999999999999999999999999999999987665443322 22245566666543211 123456
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccC-CCCcEEEEcCChhhHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL-TSEDVYVSYLPLAHIF 281 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~ 281 (663)
+++...... .........+++++++|||||||.||+|.++|.++...+......+ +. ..++++++..|++|.+
T Consensus 156 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~ 229 (542)
T PRK07786 156 EDLLAEAGP-AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHIA 229 (542)
T ss_pred HHHhhccCC-CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHHH
Confidence 666543322 1223345667899999999999999999999999998887766555 44 5788999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 282 DRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
|+..++.++..|+++++.+. ++..+++.++++++|.++++|+++..+........
T Consensus 230 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---------------------- 287 (542)
T PRK07786 230 GIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---------------------- 287 (542)
T ss_pred HHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc----------------------
Confidence 99778889999999988652 89999999999999999999999998865321100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC-ccc
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-MSM 436 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~~~ 436 (663)
...++|.+++||+++++++.+.+++.+ +.++++.||+||++.+.+...... ...
T Consensus 288 ------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~ 343 (542)
T PRK07786 288 ------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRK 343 (542)
T ss_pred ------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccccc
Confidence 002689999999999999999999887 789999999999987655443322 233
Q ss_pred cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeee
Q 006047 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 437 ~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
..++|.|++++.++|+| +++. +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.++++||
T Consensus 344 ~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR 420 (542)
T PRK07786 344 LGSVGKVIPTVAARVVD-ENMN--DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDR 420 (542)
T ss_pred CCCccccCCCceEEEEC-CCCC--CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEec
Confidence 47899999999999999 6664 45567999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 517 KKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 517 ~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
.+|+|++ +|+++++.+||++|.++|+|.+|+|++..++ +.+++++++..+. ..
T Consensus 421 ~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------------------~~---- 476 (542)
T PRK07786 421 KKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDD-------------------AA---- 476 (542)
T ss_pred ccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCC-------------------CC----
Confidence 9999996 8999999999999999999999999987643 5788888876531 00
Q ss_pred HHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 594 FILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
...+++.+++. ..+++++.|..+++++.. |+|++||++|++|+++|.+...
T Consensus 477 ~~~~~l~~~l~-~~l~~~~~P~~i~~v~~i------P~t~~GKv~r~~L~~~~~~~~~ 527 (542)
T PRK07786 477 LTLEDLAEFLT-DRLARYKHPKALEIVDAL------PRNPAGKVLKTELRERYGACVN 527 (542)
T ss_pred CCHHHHHHHHH-hhccCCCCCCEEEEeccC------CCCCcccccHHHHHHHHHhhhc
Confidence 01234455555 679999999999999665 8999999999999999987543
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-61 Score=548.77 Aligned_cols=491 Identities=19% Similarity=0.238 Sum_probs=382.0
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 42 GMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+..++.++|..+++++|+ ++|+... + ++.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 458899999999999998 5777531 1 25699999999999999999987 699999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh-cCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK-TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~-~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
|||+++|++++|+++.++.+++.+++++++++++|++++....... .......... ++.+..... .
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~ 339 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------D 339 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------h
Confidence 9999999999999999999999999999999999998765432110 0110111122 222221100 0
Q ss_pred EeHHHH--H-hcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCC
Q 006047 200 YSWDEF--L-QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (663)
Q Consensus 200 ~~~~~~--~-~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 276 (663)
..+... . ..............++++++++|||||||.||||++||.++.+........+ +++++|++++.+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P 414 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP 414 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence 011110 0 0000001111234678999999999999999999999999999887776655 7889999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006047 277 LAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (663)
Q Consensus 277 ~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (663)
++|.+++.. ++.++..|+++++.+. ++..+.+.+.++++|+++++|+.+..+.+..
T Consensus 415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------- 473 (718)
T PRK08043 415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--------------------- 473 (718)
T ss_pred chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence 999999866 6778999999998864 6678889999999999999999887654310
Q ss_pred hHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC
Q 006047 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (663)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (663)
. ....++||.+++||+++++++.+.+++.+|+++++.||+||++..+....+..
T Consensus 474 ------------------~--------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~ 527 (718)
T PRK08043 474 ------------------N--------PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA 527 (718)
T ss_pred ------------------C--------cccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence 0 00115899999999999999999999889999999999999987665543322
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCC--hhh-------hhcc-ccCCceecCcEE
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR--EDL-------TKEV-MVDGWFHTGDIG 503 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~--~~~-------~~~~-~~~g~~~TGDlg 503 (663)
...+++|+|+|++++++++ +++ .++.|||+++|++++.||+++ ++. +.+. +.+|||+|||+|
T Consensus 528 -~~~~svG~p~pg~~~~i~d-~~~------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg 599 (718)
T PRK08043 528 -AKPGTVGRILPGMDARLLS-VPG------IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV 599 (718)
T ss_pred -cCCCCCCCcCCCCeeEEec-CCC------CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence 2358999999999999998 443 235699999999999999983 432 2222 257999999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNG 580 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 580 (663)
++|+||++++.||.+|+|++ +|++|+|.|||+++.+|+.+.+++|++.+++ +.+++++.... .
T Consensus 600 ~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~-~------------ 665 (718)
T PRK08043 600 RFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSE-L------------ 665 (718)
T ss_pred EEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcc-c------------
Confidence 99999999999999999996 7999999999999999998888888886654 46666653111 0
Q ss_pred ChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 581 DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+ .+++++++++..|+.|++|+.+.+++.. |+|++||++|++|++++.+
T Consensus 666 -------~-------~~~l~~~~~~~~l~~~~vP~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 666 -------T-------REKLQQYAREHGVPELAVPRDIRYLKQL------PLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred -------C-------HHHHHHHHHhcCCCcccCCceEEEeccc------CcCCCCCcCHHHHHHHHhc
Confidence 0 1346666664459999999999999766 7999999999999987654
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-60 Score=531.02 Aligned_cols=505 Identities=24% Similarity=0.344 Sum_probs=406.1
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|.+.++++|+++|++.. +.. +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~ 90 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFAT 90 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 67999999999999999999875 332 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh-----hHhhcCC------------CcCCCCcEEEEecCCCh
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP-----EMLKTFP------------KTTEHLKTIVSFSKVKP 186 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-----~~~~~~~------------~~~~~~~~ii~~~~~~~ 186 (663)
+++|++++++++.++.+++..+++.++++++++++.... .+..... ...+.+..++.+.....
T Consensus 91 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
T PRK12583 91 ARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP 170 (558)
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC
Confidence 999999999999999999999999999999999864321 1111110 11123344444433211
Q ss_pred hhHHHHhhcCcEEEeHHHHHhccccc-----CCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhc
Q 006047 187 EQREEIEKYGLAVYSWDEFLQLGENK-----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (663)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~ 261 (663)
.....|++........ ........++++++++|||||||.||+|.++|+++.+.+......+
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--- 237 (558)
T PRK12583 171 ----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--- 237 (558)
T ss_pred ----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh---
Confidence 1122344443322110 1112234678899999999999999999999999998888777666
Q ss_pred cccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhc
Q 006047 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (663)
Q Consensus 262 ~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 338 (663)
++..+|++++.+|++|.+|... .+.++..|++++++.. ++..++..++++++|+++++|+++..++.+....
T Consensus 238 --~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--- 312 (558)
T PRK12583 238 --GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG--- 312 (558)
T ss_pred --CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccccc---
Confidence 7889999999999999999866 6677999999887653 8999999999999999999999987765321100
Q ss_pred CChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC-Cceeecc
Q 006047 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGY 417 (663)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~y 417 (663)
....+++|.+++||+++++++.+.+.+.++ ..+.+.|
T Consensus 313 ------------------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~Y 350 (558)
T PRK12583 313 ------------------------------------------NFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAY 350 (558)
T ss_pred ------------------------------------------CCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccc
Confidence 001147999999999999999999988775 4799999
Q ss_pred cccccccceeccCCCC--ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cC
Q 006047 418 GLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD 494 (663)
Q Consensus 418 G~tE~~~~~~~~~~~~--~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~ 494 (663)
|+||++.++....... .....++|.|++++.++|+| +++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+
T Consensus 351 G~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~ 427 (558)
T PRK12583 351 GMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDED 427 (558)
T ss_pred cccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCC
Confidence 9999998766543321 22347899999999999999 554 456677999999999999999999999988877 78
Q ss_pred CceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHH
Q 006047 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALER 571 (663)
Q Consensus 495 g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~ 571 (663)
+||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|..+|+|.+++|++.+++ +.+++++++.++.
T Consensus 428 ~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--- 503 (558)
T PRK12583 428 GWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGH--- 503 (558)
T ss_pred CCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCC---
Confidence 99999999999999999999999999996 8999999999999999999999999997654 5788888876532
Q ss_pred HHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 572 WAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
+. ..++|+++++ ..|++++.|.++++++.. |+|.+||++|++|++++.+.+
T Consensus 504 ---------------~~------~~~~i~~~~~-~~L~~~~~P~~i~~v~~l------P~t~sGK~~r~~L~~~~~~~~ 554 (558)
T PRK12583 504 ---------------AA------SEEELREFCK-ARIAHFKVPRYFRFVDEF------PMTVTGKVQKFRMREISIEEL 554 (558)
T ss_pred ---------------CC------CHHHHHHHHH-hhcccCcCCcEEEEeccC------CCCCCCCccHHHHHHHHHhhc
Confidence 00 0134555555 689999999999998665 899999999999999976643
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=594.15 Aligned_cols=536 Identities=16% Similarity=0.139 Sum_probs=403.0
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCC---CCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGK---AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~---~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
.++.++|.++++.+|+++|+++. +.. ....+++||+||.++++++|++|.+.|+++|++|+|+++|++++++++
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~ 312 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAV 312 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHH
Confidence 57999999999999999999864 211 123478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh---hhHhhcCCCc---CCCCcEEEEecCCChhhHHHHhh
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---PEMLKTFPKT---TEHLKTIVSFSKVKPEQREEIEK 194 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---~~~~~~~~~~---~~~~~~ii~~~~~~~~~~~~~~~ 194 (663)
|||+++|++++|++|.++.+++.++|+.+++++++++.... ..+....... ...+..+......... .
T Consensus 313 lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 386 (1389)
T TIGR03443 313 MGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV-G----- 386 (1389)
T ss_pred HHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc-c-----
Confidence 99999999999999999999999999999999999876421 1111110000 0111111111100000 0
Q ss_pred cCcEEEeHHHHHhcccc--cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 006047 195 YGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 195 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
.... ....+.+..... .........++++++++|||||||.||||+++|+++++.+..+...+ ++.++|+++
T Consensus 387 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~ 460 (1389)
T TIGR03443 387 GSLE-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKFT 460 (1389)
T ss_pred cccc-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0000 000001100000 00111234678999999999999999999999999999988877776 788999999
Q ss_pred EcCChhhHHHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 006047 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (663)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (663)
...|++|..++..++.+++.|+++++++. ++..+.+.|+++++|+++++|+++..+.....
T Consensus 461 ~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------- 525 (1389)
T TIGR03443 461 MLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT--------------- 525 (1389)
T ss_pred EecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---------------
Confidence 99999998888788899999999998764 67899999999999999999999987643100
Q ss_pred HHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeeccccccccccee
Q 006047 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTF 427 (663)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 427 (663)
...+++|.+++||+++++...+.+.+.. ++.+++.||+||++..+.
T Consensus 526 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 572 (1389)
T TIGR03443 526 ---------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVS 572 (1389)
T ss_pred ---------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEE
Confidence 0015799999999999999988887754 789999999999987655
Q ss_pred ccCCCC----c------cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc----
Q 006047 428 VSLPNE----M------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV---- 493 (663)
Q Consensus 428 ~~~~~~----~------~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---- 493 (663)
...... . ....++|.|+++++++|+| +++...+++.|+.|||+|+|+++++||+++|+.|.+.|.
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~ 651 (1389)
T TIGR03443 573 YFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWF 651 (1389)
T ss_pred EEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcc
Confidence 432111 0 1235789999999999999 666667778899999999999999999999999988772
Q ss_pred -------------------------CCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEE
Q 006047 494 -------------------------DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVW 548 (663)
Q Consensus 494 -------------------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~ 548 (663)
++||+|||+|++++||.|+++||.||+||+ +|++|+|.|||++|.+||.|.+++
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~ 730 (1389)
T TIGR03443 652 VDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENV 730 (1389)
T ss_pred cCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeE
Confidence 579999999999999999999999999997 899999999999999999999999
Q ss_pred EEeeCCC---CeEEEEEecChHH--HHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCC
Q 006047 549 VYGNSFE---SFLVAIVNPNKDA--LERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVP 623 (663)
Q Consensus 549 v~~~~~~---~~~~a~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~ 623 (663)
|++.+++ +.++|+|++..+. ...+.........-..............+.++++++ .+|+.|++|..+++++..
T Consensus 731 v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~~~l 809 (1389)
T TIGR03443 731 TLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPLKKL 809 (1389)
T ss_pred EEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEcccC
Confidence 8875543 5899999987321 000000000000000000001112233456777776 789999999999988665
Q ss_pred CCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 624 FDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 624 ~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
|+|++||++|++|++.+.+.+.
T Consensus 810 ------P~t~~GKidr~~L~~~~~~~~~ 831 (1389)
T TIGR03443 810 ------PLNPNGKVDKPALPFPDTAQLA 831 (1389)
T ss_pred ------CCCCCccccHhhcCCCchhhhh
Confidence 8999999999999765544443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-60 Score=528.62 Aligned_cols=520 Identities=21% Similarity=0.275 Sum_probs=409.1
Q ss_pred CcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCC
Q 006047 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (663)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~ 101 (663)
..+.+|++...... .+...|+.++|.++++.+|+++|+... .+. +.+||.||.+++.++|..|.+.|++
T Consensus 10 ~~~~~~~~~~~~~~----~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~ 78 (546)
T PLN02330 10 DNEHIFRSRYPSVP----VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLR 78 (546)
T ss_pred ccceeeccCCCCCC----CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCC
Confidence 34567777654432 234688999999999999999999753 211 5699999999999999999999999
Q ss_pred CCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEe
Q 006047 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (663)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~ 181 (663)
+||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+.... . .++.+
T Consensus 79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~-~~i~~ 151 (546)
T PLN02330 79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------L-PVIVL 151 (546)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------C-cEEEe
Confidence 9999999999999999999999999999999999999999999999999999999988766553321 1 23333
Q ss_pred cCCChhhHHHHhhcCcEEEeHHHHHhccccc--CCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhh
Q 006047 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENK--QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259 (663)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~ 259 (663)
+.... .....|.+++...... ........++++++++|||||||.||+|.++|.++...+......+
T Consensus 152 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~- 220 (546)
T PLN02330 152 GEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV- 220 (546)
T ss_pred cCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence 32110 1123456665443221 1123344678999999999999999999999999987665321111
Q ss_pred hccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHh
Q 006047 260 SVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (663)
Q Consensus 260 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (663)
.......++++..+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|.+.++|+++..++....
T Consensus 221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---- 294 (546)
T PLN02330 221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI---- 294 (546)
T ss_pred --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc----
Confidence 112234568899999999999865 6677999999988876 99999999999999999999999998764210
Q ss_pred cCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeec
Q 006047 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQG 416 (663)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~ 416 (663)
....++.. .++|.+++||+++++++.+++.+.+ +.++++.
T Consensus 295 ---------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~ 335 (546)
T PLN02330 295 ---------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA 335 (546)
T ss_pred ---------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence 00000000 1589999999999999999999888 8999999
Q ss_pred ccccccccceeccCCCC----ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc
Q 006047 417 YGLTETCAGTFVSLPNE----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492 (663)
Q Consensus 417 yG~tE~~~~~~~~~~~~----~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 492 (663)
||+||++.+........ .....++|.|+++++++++|.+++ .+++.|+.|||+++|+.++.||+++++.+.+.+
T Consensus 336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~--~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 413 (546)
T PLN02330 336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTG--RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTI 413 (546)
T ss_pred ccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCC--ccCCCCCceEEEEecchhhhhhccCccchhhhc
Confidence 99999976544322111 122368999999999999983334 455678999999999999999999999888877
Q ss_pred -cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHH
Q 006047 493 -VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDA 568 (663)
Q Consensus 493 -~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~ 568 (663)
.+|||+|||+|++++||+++++||.+|+|++ +|++|+|.+||+++.++|+|.+++|++.+++ +.++++|++.++.
T Consensus 414 ~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~ 492 (546)
T PLN02330 414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA 492 (546)
T ss_pred cCCCceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC
Confidence 6899999999999999999999999999996 7999999999999999999999999997643 6788888877532
Q ss_pred HHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 569 LERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.... +.|.++++ ..|+.++.|+.+.+++.. |+|++||++|+.|++++..
T Consensus 493 --------------------~~~~----~~l~~~~~-~~l~~~~~p~~~~~v~~i------P~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 493 --------------------KESE----EDILNFVA-ANVAHYKKVRVVQFVDSI------PKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred --------------------CCCH----HHHHHHHH-HhcccccCceEEEEeccC------CCCCCcceeHHHHHHHHHh
Confidence 0011 23444444 679999999999988665 7999999999999999865
Q ss_pred H
Q 006047 649 T 649 (663)
Q Consensus 649 ~ 649 (663)
.
T Consensus 542 ~ 542 (546)
T PLN02330 542 I 542 (546)
T ss_pred h
Confidence 3
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-60 Score=523.02 Aligned_cols=495 Identities=23% Similarity=0.320 Sum_probs=403.4
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.+|.++|..++ .+|+++|+... ++ +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~ 73 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT 73 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 67999999999 99999999754 33 67999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++..+++.++++++++++.....+...... .....++.++.... ..+.
T Consensus 74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~ 138 (504)
T PRK07514 74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSLL 138 (504)
T ss_pred HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccHH
Confidence 99999999999999999999999999999999998766554433221 12233444433211 1112
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 283 (663)
+...... .........++++++++|||||||.||+|.++|+++...+......+ ++.++|++++.+|++|..++
T Consensus 139 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 212 (504)
T PRK07514 139 EAAAAAP-DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGL 212 (504)
T ss_pred HhhhhcC-cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHH
Confidence 2211111 11223345679999999999999999999999999999888776666 78899999999999999998
Q ss_pred HH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcC
Q 006047 284 AI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (663)
Q Consensus 284 ~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (663)
.. .+.++..|+++++.+. ++..+++.+ .++|.+.++|.++..++....
T Consensus 213 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------- 262 (504)
T PRK07514 213 FVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------- 262 (504)
T ss_pred HHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC----------------------------
Confidence 66 6678999999998876 899999998 479999999999988764210
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccC
Q 006047 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441 (663)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G 441 (663)
.. ....+++|.+++||+++++++.+.+++.++.++++.||+||++......... .....++|
T Consensus 263 ---------~~--------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G 324 (504)
T PRK07514 263 ---------LT--------REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTVG 324 (504)
T ss_pred ---------CC--------cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCcccc
Confidence 00 0111579999999999999999999998899999999999998655433222 22347899
Q ss_pred ccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccce
Q 006047 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNI 520 (663)
Q Consensus 442 ~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~ 520 (663)
.|+++++++++|++++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|++++.||.+|+
T Consensus 325 ~~~~~~~v~i~d~~~~--~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~ 402 (504)
T PRK07514 325 FPLPGVSLRVTDPETG--AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDL 402 (504)
T ss_pred cCCCCcEEEEEECCCC--CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccce
Confidence 9999999999993333 456678999999999999999999999998888 5899999999999999999999999999
Q ss_pred eecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHH
Q 006047 521 FKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILG 597 (663)
Q Consensus 521 i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 597 (663)
|++ +|++++|.+||+.+.++++|.+++|++.+++ +.+++++++..+. . .+ .+
T Consensus 403 i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~-------~~-------~~ 457 (504)
T PRK07514 403 IIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGA----------A-------LD-------EA 457 (504)
T ss_pred EEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCC----------C-------CC-------HH
Confidence 996 8999999999999999999999999997653 5788999877532 0 00 13
Q ss_pred HHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 598 ELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 598 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
.+++.++ ..|+++++|+.+++++.. |+|.+||++|++|+++|++.+
T Consensus 458 ~l~~~~~-~~l~~~~~p~~i~~v~~~------p~t~~gK~~r~~l~~~~~~~~ 503 (504)
T PRK07514 458 AILAALK-GRLARFKQPKRVFFVDEL------PRNTMGKVQKNLLREQYADLF 503 (504)
T ss_pred HHHHHHH-hhcccCCCCcEEEEeccC------CCCCCcceeHHHHHHHHHhhc
Confidence 3444555 578899999999998665 799999999999999988754
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-60 Score=525.78 Aligned_cols=497 Identities=20% Similarity=0.266 Sum_probs=406.0
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
+++++|...++.+|+++|+... + +.+||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4789999999999999999864 3 469999999999999999999999999999999999999999999999
Q ss_pred hcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHH
Q 006047 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (663)
Q Consensus 125 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (663)
++|++++|+++.++.+++..+++.+++++++++......+....... +.+..++.++...... ........|++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 145 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HDLRTLILVGEPAHAS-----EGGGESPSWPK 145 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cccceEEEecCccccc-----CCccccccHHH
Confidence 99999999999999999999999999999999887666554443332 3455666665432110 01222345666
Q ss_pred HHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHH
Q 006047 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284 (663)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 284 (663)
+...... ........+++++++|||||||.||+|.+||.++...+......+ .+..+|++++.+|++|.+++.
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~ 218 (515)
T TIGR03098 146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN 218 (515)
T ss_pred hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence 5543321 122334568999999999999999999999999998888776665 688999999999999999998
Q ss_pred HHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCC
Q 006047 285 IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK 363 (663)
Q Consensus 285 ~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (663)
..+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+....
T Consensus 219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------- 269 (515)
T TIGR03098 219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP----------------------------- 269 (515)
T ss_pred HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence 88889999999998876 899999999999999999999999887541000
Q ss_pred CCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCccccCccCc
Q 006047 364 HVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (663)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 442 (663)
...++++|.+++||+++++++.+.+++.+ +..+++.||+||++..............+++|+
T Consensus 270 -----------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~ 332 (515)
T TIGR03098 270 -----------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK 332 (515)
T ss_pred -----------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence 00115799999999999999999999888 788999999999986655443332334578999
Q ss_pred cccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc------------CCceecCcEEEEcCCCc
Q 006047 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------------DGWFHTGDIGEWQPDGS 510 (663)
Q Consensus 443 p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~------------~g~~~TGDlg~~~~~G~ 510 (663)
|+++++++|++ +++.. ++.|+.|||+++|+.++.||+++++.+.+.|. ++||+|||+|+++++|+
T Consensus 333 ~~~~~~~~i~~-~~~~~--~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 409 (515)
T TIGR03098 333 AIPNAEVLVLR-EDGSE--CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF 409 (515)
T ss_pred ecCCCEEEEEC-CCCCC--CCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence 99999999998 66544 45679999999999999999999888766542 34899999999999999
Q ss_pred EEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhc
Q 006047 511 LKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCE 587 (663)
Q Consensus 511 l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (663)
+++.||.+|+|++ +|.+|+|.+||+++.++|.|.+|+|++.+++ +.++++++...+.
T Consensus 410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~------------------- 469 (515)
T TIGR03098 410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGE------------------- 469 (515)
T ss_pred EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCC-------------------
Confidence 9999999999996 8999999999999999999999999997653 5788888754321
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 588 NPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 588 ~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
... .+.++++++ ..|+++++|..+++++.. |+|.+||++|++|++
T Consensus 470 -~~~----~~~l~~~l~-~~l~~~~~p~~i~~v~~i------P~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 470 -ELD----RAALLAECR-ARLPNYMVPALIHVRQAL------PRNANGKIDRKALAA 514 (515)
T ss_pred -CCC----HHHHHHHHH-hhCccccCCCEEEEeccC------CCCCCCCCcHHHhcc
Confidence 000 133445555 679999999999999665 799999999999964
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=526.27 Aligned_cols=507 Identities=22% Similarity=0.320 Sum_probs=407.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..+|.++|.+.++.+|+++|++.. ++. +.+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++||
T Consensus 15 ~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la 87 (559)
T PRK08315 15 EQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA 87 (559)
T ss_pred hccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 457999999999999999999875 433 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh-----hHhhcCCC------------cCCCCcEEEEecCCC
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP-----EMLKTFPK------------TTEHLKTIVSFSKVK 185 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-----~~~~~~~~------------~~~~~~~ii~~~~~~ 185 (663)
|+++|++++|++|..+.+++..+++.++++++++++.... .+.+..+. ..+..+.++.++...
T Consensus 88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 9999999999999999999999999999999999875421 11111110 012234444443321
Q ss_pred hhhHHHHhhcCcEEEeHHHHHhcccc---c--CCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhh
Q 006047 186 PEQREEIEKYGLAVYSWDEFLQLGEN---K--QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES 260 (663)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~ 260 (663)
......+.++...... . .........+++++++|||||||.||+|.+||.+++.++..+...+
T Consensus 168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-- 235 (559)
T PRK08315 168 ----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM-- 235 (559)
T ss_pred ----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc--
Confidence 1122345555433211 0 1112234678899999999999999999999999998888877766
Q ss_pred ccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHh
Q 006047 261 VNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (663)
Q Consensus 261 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (663)
+++++|+++..+|++|..++.. ++.++..|+++++... ++..+++.++++++|+++++|+.+..++......
T Consensus 236 ---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~-- 310 (559)
T PRK08315 236 ---KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFA-- 310 (559)
T ss_pred ---CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccC--
Confidence 7889999999999999999866 6778999999986543 8999999999999999999999988765421100
Q ss_pred cCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCc-eeec
Q 006047 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQG 416 (663)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~ 416 (663)
...++++|.+++||+++++++.+.+.+.++.. +++.
T Consensus 311 -------------------------------------------~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~ 347 (559)
T PRK08315 311 -------------------------------------------RFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIA 347 (559)
T ss_pred -------------------------------------------CCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEE
Confidence 00114799999999999999999998888654 9999
Q ss_pred ccccccccceeccCCCC--ccccCccCccccCeEEEEeecCC-CccccCCCCCCCeEEEccCcccccccCChhhhhccc-
Q 006047 417 YGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (663)
Q Consensus 417 yG~tE~~~~~~~~~~~~--~~~~~~~G~p~~~~~v~iv~~~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~- 492 (663)
||+||++.+++...... .....++|.|+++++++++| ++ +. +++.|+.|||+|+|+.++.||+++++.+...|
T Consensus 348 YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~--~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~ 424 (559)
T PRK08315 348 YGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGE--TVPRGEQGELCTRGYSVMKGYWNDPEKTAEAID 424 (559)
T ss_pred EcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCC--cCCCCCceEEEEECchhhhhhcCChhHHhhcCC
Confidence 99999987665543322 12347899999999999999 44 54 45677999999999999999999999988888
Q ss_pred cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHH
Q 006047 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDAL 569 (663)
Q Consensus 493 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 569 (663)
.++||+|||+|+++++|.++++||.+|+|++ +|++++|.+||++|.++|+|.+++|++.+++ +.++++|++..+.
T Consensus 425 ~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~- 502 (559)
T PRK08315 425 ADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGA- 502 (559)
T ss_pred CCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCC-
Confidence 7899999999999999999999999999996 8999999999999999999999999997654 5788888876532
Q ss_pred HHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 570 ERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
. .. .+.+++++. ..|+.+++|.++++++.. |+|++||++|.+|++++.++
T Consensus 503 ---------~------~~--------~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GK~~r~~L~~~~~~~ 552 (559)
T PRK08315 503 ---------T------LT--------EEDVRDFCR-GKIAHYKIPRYIRFVDEF------PMTVTGKIQKFKMREMMIEE 552 (559)
T ss_pred ---------C------CC--------HHHHHHHHH-hhcccccCCcEEEEcccC------CCCCCCceeHHHHHHHHHhh
Confidence 0 00 123444444 678999999999999665 89999999999999987775
Q ss_pred HH
Q 006047 650 FL 651 (663)
Q Consensus 650 ~~ 651 (663)
..
T Consensus 553 ~~ 554 (559)
T PRK08315 553 LG 554 (559)
T ss_pred hc
Confidence 54
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=539.71 Aligned_cols=566 Identities=20% Similarity=0.293 Sum_probs=452.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
.++..|+.++|.+.++++|+++|+... . ..++++++||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|+++
T Consensus 423 ~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia 498 (1452)
T PTZ00297 423 LAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVIL 498 (1452)
T ss_pred cccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 366789999999999999999999643 1 124467899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhH-HHHhhcCcE
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR-EEIEKYGLA 198 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-~~~~~~~~~ 198 (663)
.+||+++|+++||+++ +.+++.++|++++++++|++.+....+.+... ..++.+|+++....... ......++.
T Consensus 499 ~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~ 573 (1452)
T PTZ00297 499 EVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNIT 573 (1452)
T ss_pred HHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcc
Confidence 9999999999999975 46789999999999999999877776655432 36889999864211000 000011345
Q ss_pred EEeHHHHHhcccccCC-CCCCCCCCCeEEEEE---ccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEc
Q 006047 199 VYSWDEFLQLGENKQF-DLPVKKKNDICTIMY---TSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~---TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~ 274 (663)
..+|++++..+..... ......++|++.++| ||||||.||||++||+++++++....... ......++|+++++
T Consensus 574 ~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D~~Ls~ 651 (1452)
T PTZ00297 574 LIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKHLMVHF 651 (1452)
T ss_pred eeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCCEEEEe
Confidence 6789999987643221 123346788999986 99999999999999999999998865421 00134678999999
Q ss_pred CChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 006047 275 LPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (663)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
+|++|+++....+.+++.|+++.. .++..+++.+++++||+++++|.++..+.+.+.++....+.+++++++++++.+
T Consensus 652 LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k 729 (1452)
T PTZ00297 652 TPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLR 729 (1452)
T ss_pred chHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999997777778999999874 378999999999999999999999999999888888888899999999999988
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCC--CCcHHHHHHHHHhcCCceeecccccccccceeccCCC
Q 006047 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA--PLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (663)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~--~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~ 432 (663)
.+.+..+ ....+.++.+.+++++..+|.++|.+++||. +++..+. .+++++.+||+||+. +.+..+
T Consensus 730 ~~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~------~~i~i~~g~glTE~~---~~~~~~ 797 (1452)
T PTZ00297 730 SRLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL------EHISVCYVPCLREVF---FLPSEG 797 (1452)
T ss_pred HHHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh------CCceEEEecceEEee---eecCCC
Confidence 7766543 2445688899999999999999999999983 5553332 367889999999943 233333
Q ss_pred CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEE
Q 006047 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLK 512 (663)
Q Consensus 433 ~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~ 512 (663)
.. ...|.|+|+++++|.+.++.... +..|||++++ +++++.|.+. .+||+ +||+|+
T Consensus 798 ~~---~~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L~ 853 (1452)
T PTZ00297 798 VF---CVDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTLR 853 (1452)
T ss_pred Cc---ccCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeEE
Confidence 32 22399999999999985443221 2469999953 4788888764 35664 699999
Q ss_pred EeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHH-HHHHHcCCC--C------Chh
Q 006047 513 IIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALE-RWAAENGVN--G------DFK 583 (663)
Q Consensus 513 ~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~-~~~~~~~~~--~------~~~ 583 (663)
+.||.+|+|++++|++|.|..||+++.++|.|.+++|+|.+.. .++|+|+|+.+.+. .|....+.. . +..
T Consensus 854 IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k-~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~ 932 (1452)
T PTZ00297 854 LLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR-PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWT 932 (1452)
T ss_pred EEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC-ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHH
Confidence 9999999999999999999999999999999999999998744 49999999999998 998887752 1 344
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHhccc
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSEY 657 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~~~ 657 (663)
+++++ ..+.+.+.+++..+...+..+++++.|.+++++|+++++..||+.|++|+.+.+.|++.|+++|.+.
T Consensus 933 el~~~--~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~~ 1004 (1452)
T PTZ00297 933 ELVAY--ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDV 1004 (1452)
T ss_pred HHHHh--HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhccc
Confidence 44432 1234555554444445577899999999999999999999999999999999999999999999864
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-60 Score=523.43 Aligned_cols=498 Identities=22% Similarity=0.274 Sum_probs=404.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+.|+.++|.++++++|+++|++.. + +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la 81 (524)
T PRK06188 11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA 81 (524)
T ss_pred CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999999999999864 3 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCC-ChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK-KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
|+++|++++|+++..+.+++..+++.++++.+++++. .......... ....+..++.+...... ..
T Consensus 82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~ 148 (524)
T PRK06188 82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLA-RVPSLKHVLTLGPVPDG------------VD 148 (524)
T ss_pred HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhh-hcCCceEEEEeCCccch------------hh
Confidence 9999999999999999999999999999999999876 3333222221 22344555555432110 00
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
..+.......... .....++++++++|||||||.||+|.++|.++...+......+ ++..++++++.+|++|.+
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~ 222 (524)
T PRK06188 149 LLAAAAKFGPAPL-VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG 222 (524)
T ss_pred HHHhhhccCcccc-cccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence 1111111111111 1223456699999999999999999999999999888877766 788999999999999988
Q ss_pred HHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 282 DRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
++. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..++......
T Consensus 223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------------------------- 276 (524)
T PRK06188 223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR------------------------- 276 (524)
T ss_pred hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------------------------
Confidence 874 4667899999999877 8999999999999999999999998876521100
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-----cc
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-----MS 435 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-----~~ 435 (663)
...++++|.+++||++++++....+.+.++..+++.||+||++..+....... ..
T Consensus 277 --------------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 336 (524)
T PRK06188 277 --------------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPK 336 (524)
T ss_pred --------------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccc
Confidence 00115899999999999999888888888999999999999976555443321 12
Q ss_pred ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEee
Q 006047 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 436 ~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
...++|+|++++++++++ +++. +++.|+.|||+++|+.++.||++++..+...|.+|||+|||+|+++++|.+++.|
T Consensus 337 ~~~~~G~p~~g~~v~i~~-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G 413 (524)
T PRK06188 337 RLTSCGRPTPGLRVALLD-EDGR--EVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVD 413 (524)
T ss_pred cCCccccccCCcEEEEEc-CCCC--CCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEe
Confidence 346899999999999998 6654 4567799999999999999999999999888899999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|+|++ +|++++|.+||++|.++++|.+++|++.+++ +.++++++++++. . ..
T Consensus 414 R~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------------~--~~- 471 (524)
T PRK06188 414 RKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGA------------------A--VD- 471 (524)
T ss_pred ccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCC------------------C--CC-
Confidence 99999996 8999999999999999999999999997654 5788888877532 0 00
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.++|+++++ ..++.++.|..|++++.. |+|++||++|++|+++|.+.
T Consensus 472 ---~~~l~~~~~-~~l~~~~~p~~i~~v~~~------P~t~~gKi~r~~L~~~~~~~ 518 (524)
T PRK06188 472 ---AAELQAHVK-ERKGSVHAPKQVDFVDSL------PLTALGKPDKKALRARYWEG 518 (524)
T ss_pred ---HHHHHHHHH-HhcccCCCCcEEEEecCC------CCCccccccHHHHHHHHHhh
Confidence 233445555 678899999999999665 79999999999999998553
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=519.45 Aligned_cols=489 Identities=22% Similarity=0.312 Sum_probs=397.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
|.++.++|.++++.+|+++|++.. + +.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999764 2 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++..+.+++..+++.++++.++++++...... . ....+.++..... .+
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~~-------------~~ 130 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-------ETPKIVIDAAAQA-------------DS 130 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-------ccceEEecCcccc-------------hh
Confidence 9999999999999999999999999999999999876543221 0 0122222221100 01
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
..+.. ............++++++++|||||||.||+|.++|.++..........+ ++..+++++...|++|.++
T Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~ 204 (497)
T PRK06145 131 RRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA 204 (497)
T ss_pred HHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence 11111 11111122345678999999999999999999999999987665544444 6789999999999999998
Q ss_pred HHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 283 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
+.. .+.+++.|+++++.+. ++..+++.++++++|.+.++|+++..++.....
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~-------------------------- 258 (497)
T PRK06145 205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR-------------------------- 258 (497)
T ss_pred HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence 865 5667999999988776 999999999999999999999999887642110
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCC-CccccC
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN-EMSMIG 438 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~ 438 (663)
.. ...+++|.+++||+++++.+.+.+.+.+ +.++++.||+||++..+...... .....+
T Consensus 259 -----------~~--------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 319 (497)
T PRK06145 259 -----------DR--------FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319 (497)
T ss_pred -----------cc--------cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence 00 0114799999999999999999998887 67899999999998765543322 222347
Q ss_pred ccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeecc
Q 006047 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKK 518 (663)
Q Consensus 439 ~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~ 518 (663)
++|.|++++++++++ +++. +++.|+.|||+++|++++.||+++++.+.+.|.++||+|||+|+++++|++++.||.+
T Consensus 320 ~~G~~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~ 396 (497)
T PRK06145 320 STGRALAHVEIRIAD-GAGR--WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK 396 (497)
T ss_pred CcccCCCCceEEEEC-CCCC--CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence 899999999999998 6654 4556799999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHH
Q 006047 519 NIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFI 595 (663)
Q Consensus 519 d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 595 (663)
|+|++ +|++++|.+||+.|.++|+|.+++|++.+++ +.+++++++.... . ..
T Consensus 397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------------~--~~---- 451 (497)
T PRK06145 397 DMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA------------------T--LT---- 451 (497)
T ss_pred ceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCC------------------C--CC----
Confidence 99996 8999999999999999999999999997654 5788999876531 0 00
Q ss_pred HHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 596 LGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 596 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
...|.++++ ..|++++.|..+.+++.. |+|++||++|++|++++.
T Consensus 452 ~~~l~~~~~-~~l~~~~~p~~i~~v~~i------P~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 452 LEALDRHCR-QRLASFKVPRQLKVRDEL------PRNPSGKVLKRVLRDELN 496 (497)
T ss_pred HHHHHHHHH-HhhhcCCCCCEEEEeccC------CCCCcccccHHHHHHHhc
Confidence 134445555 678899999999998665 799999999999998753
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=525.21 Aligned_cols=511 Identities=21% Similarity=0.305 Sum_probs=395.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
..++.++|.++++++|+++|+... + +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 5699999999999999999985 99999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCC--ChhhHHH--------
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV--KPEQREE-------- 191 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~~~~~-------- 191 (663)
||+++|++++++++.++.+++.++++.++++++++++............ .....++..... .......
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence 9999999999999999999999999999999999987554333222111 011111110000 0000000
Q ss_pred H----hh-cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccc---
Q 006047 192 I----EK-YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE--- 263 (663)
Q Consensus 192 ~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~--- 263 (663)
. .. ......+|+++..........+.....+++++++|||||||.||+|.++|+++...+......+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 0 00 000123455554433222222334567899999999999999999999999998877765554421110
Q ss_pred -cCCC-CcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhc
Q 006047 264 -KLTS-EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (663)
Q Consensus 264 -~~~~-~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 338 (663)
.... .+++++.+|++|.+++.. .+..+..|.++++... ++..++..++++++|+++++|+.+..+.....
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----- 326 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG----- 326 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence 0223 357789999999999865 5556788887766542 88999999999999999999999988764210
Q ss_pred CChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeeccc
Q 006047 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYG 418 (663)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG 418 (663)
... ..++++|.+++||+++++.+.+.+.+.+++++++.||
T Consensus 327 --------------------------------~~~--------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG 366 (562)
T PRK12492 327 --------------------------------FKD--------LDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYG 366 (562)
T ss_pred --------------------------------ccc--------ccccceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence 000 1115799999999999999999999888999999999
Q ss_pred ccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCce
Q 006047 419 LTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (663)
Q Consensus 419 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~ 497 (663)
+||++.++...........+++|+|+++++++|+| +++. +++.|+.|||+|+|+.++.||+++++.+.+.| .+|||
T Consensus 367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~ 443 (562)
T PRK12492 367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGN--ELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF 443 (562)
T ss_pred ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCC--CCCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence 99998876655443333447899999999999999 6654 45667999999999999999999999998888 58999
Q ss_pred ecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHH
Q 006047 498 HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAA 574 (663)
Q Consensus 498 ~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~ 574 (663)
+|||+|+++++|++++.||.+|+|++ +|++|+|.+||+.|.+||.|.+++|++.++. +.+++++++....
T Consensus 444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------ 516 (562)
T PRK12492 444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG------ 516 (562)
T ss_pred ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC------
Confidence 99999999999999999999999996 7999999999999999999999999997653 5788888765421
Q ss_pred HcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 575 ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
.. .+++++++. ..|+.+++|.++.+++.. |+|.+||++|++|+++
T Consensus 517 ------------~~-------~~~i~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 517 ------------LS-------VEELKAYCK-ENFTGYKVPKHIVLRDSL------PMTPVGKILRRELRDI 561 (562)
T ss_pred ------------CC-------HHHHHHHHH-HhcccccCCcEEEEeccC------CCCCCCceeHHHHHhh
Confidence 00 134555555 678999999999998665 7999999999999864
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=520.52 Aligned_cols=499 Identities=16% Similarity=0.214 Sum_probs=401.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+.++.++|.++++ |+++|+++. + +.+||.||++++.++|.+|.+.|+++|++|+++++|++++++++||
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 5689999999887 999999864 2 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh----hhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~----~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
|+++|++++++.+.....++..+++.++++++++++... ...........+....++......
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------- 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG------------- 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence 999999888777777788899999999999999986531 111111111113334444332210
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
...+.+.+..... ........++++++++|||||||.||+|++||.++...+......+ ++.+++++++.+|++
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 233 (536)
T PRK10946 160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA 233 (536)
T ss_pred CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence 1223444433321 2223345678999999999999999999999999999988876666 788999999999999
Q ss_pred hHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|..+..++..+......
T Consensus 234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~----------------- 296 (536)
T PRK10946 234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR----------------- 296 (536)
T ss_pred ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence 9988764 5677999999988765 8899999999999999999999999987643211100
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
...+++|.+++||+++++.+.+.+.+.+++++++.||+||++............
T Consensus 297 --------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 350 (536)
T PRK10946 297 --------------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER 350 (536)
T ss_pred --------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence 011579999999999999999999988899999999999976443322222223
Q ss_pred ccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 436 ~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...++|.|+ |++.++++| +++. +++.|+.|||+++|+.++.||+++++.+.+.| .++||+|||+|++|++|++++
T Consensus 351 ~~~~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~ 427 (536)
T PRK10946 351 IFTTQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV 427 (536)
T ss_pred ccccCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence 357899999 799999998 6554 45678999999999999999999999998888 689999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.+|+|++ +|++++|.+||..|.++|+|.+++|++.+++ +.+++++++.++. .
T Consensus 428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~------------------~--- 485 (536)
T PRK10946 428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL------------------K--- 485 (536)
T ss_pred eccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC------------------C---
Confidence 9999999995 8999999999999999999999999997654 5788888876521 1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
.+++++++++..+++|++|..+.+++.. |+|++||++|++|++++.++.
T Consensus 486 -----~~~l~~~~~~~~l~~~~~P~~~~~~~~i------P~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 486 -----AVQLRRFLREQGIAEFKLPDRVECVDSL------PLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred -----HHHHHHHHHhCCccccccCcEEEEeccC------CCCCCCcccHHHHHHHHHhhc
Confidence 1245555553359999999999998665 799999999999999877653
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=530.84 Aligned_cols=503 Identities=16% Similarity=0.189 Sum_probs=378.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccC---CCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDG---KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~---~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (663)
+...|+.++|.++++.+|+++|+++. +. ..+.++.+||+||.++++++|++|.+. +++||+|+++++|+++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~ 106 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYV 106 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHH
Confidence 34578999999999999999999875 32 123456899999999999999999987 999999999999999999
Q ss_pred HHHHHHHhcCCeEeec-cCCCC--hHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcC-CCCcEEEEecCCChhhHHHHh
Q 006047 118 IGMEACNALGLHCVPL-YDTLG--AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEIE 193 (663)
Q Consensus 118 ~~~lA~~~~G~v~v~l-~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~ 193 (663)
+++|||+++|++++|+ ++.++ .+++.++|+.++++++|+++.....+........ .....++.++...
T Consensus 107 ~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------- 178 (612)
T PRK12476 107 AGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP-------- 178 (612)
T ss_pred HHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecccc--------
Confidence 9999999999999999 57766 7899999999999999998776554433221110 0112344332210
Q ss_pred hcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhcccc-CCCCcEEE
Q 006047 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK-LTSEDVYV 272 (663)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~~ 272 (663)
... ..........++++++++|||||||.||||.++|+++.+.+......+ + +.++++++
T Consensus 179 -------------~~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l 239 (612)
T PRK12476 179 -------------DSA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGV 239 (612)
T ss_pred -------------ccc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEE
Confidence 000 011112234678999999999999999999999999988777655544 5 67889999
Q ss_pred EcCChhhHHHHHHHHHHHHcCcEEEEEcC-----CHHHHHHHhh--hcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIG--ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~--~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
+++|++|..|+...+.+++.|+++++... ++..+++.++ ++++|.++.+|+++..++......
T Consensus 240 ~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~---------- 309 (612)
T PRK12476 240 SWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP---------- 309 (612)
T ss_pred EeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh----------
Confidence 99999999998776665555666555432 7889999994 589999999999888776421000
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc---CC---ceeecccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA---CA---HVLQGYGL 419 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~---~v~~~yG~ 419 (663)
+.... ..++++| +++||+++++++.+.+++.+ |. .+++.||+
T Consensus 310 -----------------------~~~~~--------~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~ 357 (612)
T PRK12476 310 -----------------------AEGDD--------IDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGI 357 (612)
T ss_pred -----------------------hhhcC--------cchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccch
Confidence 00000 0114789 99999999999999998876 43 48999999
Q ss_pred cccccceeccCCCCc--------------------------cccCccCccccCeEEEEeecCC-CccccCCCCCCCeEEE
Q 006047 420 TETCAGTFVSLPNEM--------------------------SMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCV 472 (663)
Q Consensus 420 tE~~~~~~~~~~~~~--------------------------~~~~~~G~p~~~~~v~iv~~~~-~~~~~~~~g~~Gel~v 472 (663)
||++..+........ ....++|+|+++++++|+| ++ +. +++.|+.|||++
T Consensus 358 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~--~~~~g~~GEl~v 434 (612)
T PRK12476 358 AEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGA--ELPDGEVGEIWL 434 (612)
T ss_pred hhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCc--CCCCCCEEEEEE
Confidence 998765443221110 0124789999999999999 55 54 455779999999
Q ss_pred ccCcccccccCChhhhhcccc-------------------CCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHH
Q 006047 473 KGSTVFSGYYKREDLTKEVMV-------------------DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVEN 533 (663)
Q Consensus 473 ~g~~~~~gy~~~~~~~~~~~~-------------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~ 533 (663)
+|++++.||+++++.+.+.|. ++||+|||+|+++ ||+|+|+||.+|+|++ +|++|+|.|
T Consensus 435 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~e 512 (612)
T PRK12476 435 HGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQD 512 (612)
T ss_pred cCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHH
Confidence 999999999999999988773 2499999999985 9999999999999997 899999999
Q ss_pred HHHHHh-cCcCcce--EEEEeeCCC--CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCC
Q 006047 534 LENIYA-LVSAIDS--VWVYGNSFE--SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKL 608 (663)
Q Consensus 534 IE~~l~-~~~~V~~--~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l 608 (663)
||++|. .||.|.+ ++|++.+++ +.++++|++.++. .....+.+.+.+++.+..
T Consensus 513 IE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~-------------------~~~~~~~l~~~~~~~l~~--- 570 (612)
T PRK12476 513 IEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGT-------------------SRADPAPAIDAIRAAVSR--- 570 (612)
T ss_pred HHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCc-------------------ccccHHHHHHHHHHHHHH---
Confidence 999997 5899999 677776654 6888988876532 000112333444433331
Q ss_pred CCccc-eeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 609 KGFEF-IKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 609 ~~~~~-p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.+++ |..+.+++. +.+|+|++||++|++|+++|.+
T Consensus 571 -~~~~~p~~v~~v~~----~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 571 -RHGLAVADVRLVPA----GAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred -hhCCcceEEEEECC----CCcCcCCchHHHHHHHHHHHHc
Confidence 2455 577888752 1128999999999999998754
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=499.13 Aligned_cols=512 Identities=19% Similarity=0.255 Sum_probs=413.2
Q ss_pred CCCCHHH-HHHHHHHhC-CCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 42 GMESCWD-VFRMAVERN-PNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 42 ~~~~l~~-~l~~~a~~~-Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
++.|+.. .+.+..+.. ++.+++++. +..+++...+||.|+.+++.++|..|.+.|+++||+|++++|+.++++++
T Consensus 61 ~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia 137 (626)
T KOG1175|consen 61 AFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIA 137 (626)
T ss_pred chhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHH
Confidence 3445544 444444444 899999988 44444444599999999999999999988999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh---------hHhhcCCCc---C-CCCcEEEEecCCCh
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKT---T-EHLKTIVSFSKVKP 186 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~---~-~~~~~ii~~~~~~~ 186 (663)
+|||+++|++.+++...+++.++...|..++++++++.+.... ...+..... . .....+++...
T Consensus 138 ~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 214 (626)
T KOG1175|consen 138 MLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR--- 214 (626)
T ss_pred HHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc---
Confidence 9999999999999999999999999999999999999875332 111111111 0 11111111111
Q ss_pred hhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHH-HHHHHhhhhhhhhhccccC
Q 006047 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLESVNEKL 265 (663)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~-l~~~~~~~~~~~~~~~~~~ 265 (663)
.+...|..++..... ..++...+.+|+.+|+|||||||.||++.+++.. ++..+......+ .+
T Consensus 215 ----------~~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~ 278 (626)
T KOG1175|consen 215 ----------NRDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DL 278 (626)
T ss_pred ----------cccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cC
Confidence 012345555444433 2336677899999999999999999999888876 555555555555 88
Q ss_pred CCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCCh
Q 006047 266 TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341 (663)
Q Consensus 266 ~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~ 341 (663)
.++|++++.....|+.|... ++.+|+.|+++++.+. ++..+++.+.+|++|++++.|+.++.+.+...+......
T Consensus 279 q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~- 357 (626)
T KOG1175|consen 279 QPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYS- 357 (626)
T ss_pred CCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccc-
Confidence 99999999999999998876 6779999999999876 789999999999999999999999987543222211110
Q ss_pred hHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCC-ceeeccccc
Q 006047 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLT 420 (663)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~yG~t 420 (663)
+ ++||.+.++||+++++..+++.+.++. +|++.||+|
T Consensus 358 ----------------------------------~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 358 ----------------------------------L--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred ----------------------------------c--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 0 379999999999999999999999987 699999999
Q ss_pred ccccceeccCCCC-ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC---cccccccCChhhhhc-cc--c
Q 006047 421 ETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKE-VM--V 493 (663)
Q Consensus 421 E~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~-~~--~ 493 (663)
|+|+.+..+.... ...+++.|.|++++.+.|+| ++|+..+-.. +.|+|+++.+ +++++|++|++.-.. .| .
T Consensus 396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~ 473 (626)
T KOG1175|consen 396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKF 473 (626)
T ss_pred ccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccC
Confidence 9999999888877 66789999999999999999 7777666544 8999999973 779999999994443 34 4
Q ss_pred CCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHH
Q 006047 494 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALE 570 (663)
Q Consensus 494 ~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~ 570 (663)
.|||+|||.|++|+||+++++||.||+|++ +|.++++.|||+++..||.|.|++|||.+++ +.++|||++.++.
T Consensus 474 pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~-- 550 (626)
T KOG1175|consen 474 PGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGS-- 550 (626)
T ss_pred CceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCC--
Confidence 799999999999999999999999999997 8999999999999999999999999998865 7999999999853
Q ss_pred HHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 571 RWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
...+.+.++|+++.+ +.+.++..|+.|.+++.. |+|.+||+.|+.||+..+..
T Consensus 551 -------------------~~~~~L~kel~~~VR-~~igp~a~P~~I~~v~~L------PkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 551 -------------------HDPEQLTKELVKHVR-SVIGPYAVPRLIVFVPGL------PKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred -------------------CChHHHHHHHHHHHH-hhcCcccccceeEecCCC------CccccchhHHHHHHHHhccC
Confidence 223445555555555 889999999999999776 79999999999999987654
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-59 Score=518.89 Aligned_cols=509 Identities=18% Similarity=0.221 Sum_probs=399.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.++|.+.++.+|+++|++.. + +.+||+||++++.++|.+|.+.|+++||+|+++++|+++++++++
T Consensus 8 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~l 78 (540)
T PRK06164 8 RADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL 78 (540)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3468999999999999999999843 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh-----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP-----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
||+++|++++|+++..+.+++.++++.+++++++++++... .+........+.++.++.++....... .
T Consensus 79 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 152 (540)
T PRK06164 79 ACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------A 152 (540)
T ss_pred HHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------C
Confidence 99999999999999999999999999999999999876421 122222222234455655542111000 0
Q ss_pred cEEEeHHHHHhcccccC---CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 006047 197 LAVYSWDEFLQLGENKQ---FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~ 273 (663)
.....+..+........ ........+++++++|||||||.||+|.++|.++...+..+...+ ++..++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~ 227 (540)
T PRK06164 153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLA 227 (540)
T ss_pred CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 00000111111110000 011233568999999999999999999999999999988877777 7889999999
Q ss_pred cCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006047 274 YLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (663)
Q Consensus 274 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (663)
.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 228 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~------------------ 289 (540)
T PRK06164 228 ALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGE------------------ 289 (540)
T ss_pred cCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcc------------------
Confidence 9999999999888889999999988776 899999999999999999999999998764100
Q ss_pred hhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecC-CCCcHHHHHHHHHhcCCceeecccccccccceeccCC
Q 006047 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA-APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431 (663)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG-~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~ 431 (663)
....++++.+.++| .+....+.+++... ++++++.||+||++..+.....
T Consensus 290 ----------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~ 340 (540)
T PRK06164 290 ----------------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPA 340 (540)
T ss_pred ----------------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCC
Confidence 00114688777665 55556666766654 8999999999999876655443
Q ss_pred CCc--cccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcC
Q 006047 432 NEM--SMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQP 507 (663)
Q Consensus 432 ~~~--~~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~ 507 (663)
... ....+.|.|+ ++++++++|.+++ .+++.|+.||||++|++++.||+++++.+.+.| .+|||+|||+|++++
T Consensus 341 ~~~~~~~~~~~g~~~~~~~~~~i~d~~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~ 418 (540)
T PRK06164 341 TDPVSVRIEGGGRPASPEARVRARDPQDG--ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG 418 (540)
T ss_pred CCCCcceeccCccccCCCeEEEEecCCCC--cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC
Confidence 221 1224567775 7899999983333 456778999999999999999999999999888 689999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCChhhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGDFKSL 585 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 585 (663)
+|.+++.||.+|+|++ +|++|+|.+||+.|.++|+|.+++|++.+. ...+++++++.++.
T Consensus 419 ~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~----------------- 480 (540)
T PRK06164 419 DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGA----------------- 480 (540)
T ss_pred CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCC-----------------
Confidence 9999999999999997 899999999999999999999999998653 35788999876532
Q ss_pred hcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCccc---ccchHHHHHHHHHHHH
Q 006047 586 CENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTY---KKKRPQLLKHYQVTFL 651 (663)
Q Consensus 586 ~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~G---Kv~R~~l~~~~~~~~~ 651 (663)
... .++|.++++ ..|+++++|..+.+++.. |+|++| |++|+.|++++++.+.
T Consensus 481 ---~~~----~~~l~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~g~~~Ki~r~~L~~~~~~~~~ 535 (540)
T PRK06164 481 ---SPD----EAGLMAACR-EALAGFKVPARVQVVEAF------PVTESANGAKIQKHRLREMAQARLA 535 (540)
T ss_pred ---CCC----HHHHHHHHH-hhcccCcCCcEEEEecCC------CCCCCCccccccHHHHHHHHHHhhh
Confidence 001 234445555 678999999999988665 799999 9999999999876554
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-60 Score=523.70 Aligned_cols=481 Identities=17% Similarity=0.217 Sum_probs=361.9
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
-+.+.|+++++++|+++|++.. + ++.++++||+||.++++++|.+|.++ ++||+|+|+++|++++++++|||+
T Consensus 3 ~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~ 75 (525)
T PRK05851 3 ELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW 75 (525)
T ss_pred hHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence 3899999999999999999865 2 34578999999999999999999998 899999999999999999999999
Q ss_pred hcCCeEeeccCC--------CChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 125 ALGLHCVPLYDT--------LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 125 ~~G~v~v~l~~~--------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
++|++++ +++. ...+++.+++..++++++|++......+..... . +.+.+
T Consensus 76 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------- 133 (525)
T PRK05851 76 LAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------- 133 (525)
T ss_pred HcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc-------------
Confidence 9999865 3332 223456677899999999998765544322211 0 00000
Q ss_pred cEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCC-CCcEEEEcC
Q 006047 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT-SEDVYVSYL 275 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~~~~~ 275 (663)
+....... .........++++++++|||||||.||||.++|.++++.+..+...+ ++. .+|++++.+
T Consensus 134 -----~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~ 201 (525)
T PRK05851 134 -----LATAAHTN--RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWL 201 (525)
T ss_pred -----cccccccc--ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcC
Confidence 00000000 00111234678999999999999999999999999999988877766 677 899999999
Q ss_pred ChhhHHHHHHHHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 276 PLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 276 p~~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
|++|.+++..++.+++.|+++++.+. ++..+++.++++++|++..+|.++..+.+ ......
T Consensus 202 pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~-~~~~~~------------- 267 (525)
T PRK05851 202 PLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGK-YARRVS------------- 267 (525)
T ss_pred CCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHH-hhcccc-------------
Confidence 99999999878889999999998762 57789999999999987554444433322 110000
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHh---cCC---ceeeccccccccc
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV---ACA---HVLQGYGLTETCA 424 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~~~ 424 (663)
...++++|.+++||+++++++.+++.+. +|. .+++.||+||++.
T Consensus 268 ------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~ 317 (525)
T PRK05851 268 ------------------------------DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC 317 (525)
T ss_pred ------------------------------CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhce
Confidence 0011479999999999999998888764 344 4999999999986
Q ss_pred ceeccCCCC--------------ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhc
Q 006047 425 GTFVSLPNE--------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490 (663)
Q Consensus 425 ~~~~~~~~~--------------~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~ 490 (663)
.+....... .....++|+|+++++++|+| +++. .+++.|+.|||+++|++++.||++++..+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-- 393 (525)
T PRK05851 318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID-- 393 (525)
T ss_pred EEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC--
Confidence 655432210 11236799999999999998 5543 34567899999999999999999988643
Q ss_pred cccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChH
Q 006047 491 VMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKD 567 (663)
Q Consensus 491 ~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~ 567 (663)
.+|||+|||+|+++ +|+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.+.++|+....
T Consensus 394 --~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~ 469 (525)
T PRK05851 394 --PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR 469 (525)
T ss_pred --CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEec
Confidence 47899999999997 8999999999999997 8999999999999999999999999986543 355566554321
Q ss_pred HHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEcc--CCCCCCCCccCcccccchHHHHHH
Q 006047 568 ALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEP--VPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
. ... +.+.+.+++.+. ..+ +++|..+++++ .. |+|++||++|++|++.
T Consensus 470 ~-----------------~~~----~~~~~~~~~~l~-~~l--~~~P~~~~~v~~~~l------P~t~~GKi~r~~L~~~ 519 (525)
T PRK05851 470 G-----------------PDE----AGARSEVVQRVA-SEC--GVVPSDVVFVAPGSL------PRTSSGKLRRLAVKRS 519 (525)
T ss_pred C-----------------cch----HHHHHHHHHHHH-HHh--CCCccEEEEECCCCc------CcCcchHHHHHHHHHH
Confidence 0 011 122233333333 222 27899999886 33 8999999999999987
Q ss_pred HHH
Q 006047 646 YQV 648 (663)
Q Consensus 646 ~~~ 648 (663)
+++
T Consensus 520 ~~~ 522 (525)
T PRK05851 520 LEA 522 (525)
T ss_pred HHh
Confidence 754
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=518.43 Aligned_cols=507 Identities=20% Similarity=0.249 Sum_probs=400.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|+++++.+||+++++.. . .+..+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~ 84 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI 84 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence 48999999999999999999853 1 123478999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++..+++.+++++++++.+..+.+.+..... +.++.++......... .....+...+.
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 159 (542)
T PRK06018 85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKL-PSVERYVVLTDAAHMP----QTTLKNAVAYE 159 (542)
T ss_pred HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhC-CCccEEEEeccccccc----ccCccccccHH
Confidence 999999999999999999999999999999999988776554443222 3445555543321000 00001223455
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHH-HHH-hhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV-TFI-AGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~-~~~-~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+++..... ........++++++++|||||||.||+|.+||++.+ +.. ......+ +++.+|+++...|++|.+
T Consensus 160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~~ 233 (542)
T PRK06018 160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHAN 233 (542)
T ss_pred HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHHh
Confidence 55544322 222334567889999999999999999999999743 222 2222233 678899999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 282 DRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
++...+.++..|+++++... ++..+++.++++++|.++++|+.+..++++.....
T Consensus 234 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------- 290 (542)
T PRK06018 234 SWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG----------------------- 290 (542)
T ss_pred hhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------
Confidence 98777778999999988653 78899999999999999999999998875432110
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCc-----
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM----- 434 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~----- 434 (663)
...+++|.+++||+++++++.+.+++ ++.++++.||+||++.+.........
T Consensus 291 ----------------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 347 (542)
T PRK06018 291 ----------------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLP 347 (542)
T ss_pred ----------------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCC
Confidence 00147999999999999999999998 89999999999999876554321110
Q ss_pred -----cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCC
Q 006047 435 -----SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPD 508 (663)
Q Consensus 435 -----~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~ 508 (663)
....++|.|.++++++|+| +++...+.+.+..|||+++|++++.||++.. ...+ .+|||+|||+|+++++
T Consensus 348 ~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~ 423 (542)
T PRK06018 348 GDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAY 423 (542)
T ss_pred chhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCC
Confidence 1125789999999999999 7777776655578999999999999999832 2223 6899999999999999
Q ss_pred CcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhh
Q 006047 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSL 585 (663)
Q Consensus 509 G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 585 (663)
|++++.||.+|+|++ +|++++|.+||+.+.+||+|.+|+|++.+++ +.++++|++.++.
T Consensus 424 g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------------- 485 (542)
T PRK06018 424 GYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGE----------------- 485 (542)
T ss_pred ccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCC-----------------
Confidence 999999999999995 8999999999999999999999999997654 5788888876532
Q ss_pred hcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 586 CENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 586 ~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
... .+.++++++ ..++.++.|+.+.+++.. |+|++||++|++|+++|.+
T Consensus 486 ---~~~----~~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 486 ---TAT----REEILKYMD-GKIAKWWMPDDVAFVDAI------PHTATGKILKTALREQFKD 534 (542)
T ss_pred ---CCC----HHHHHHHHH-hhCccccCCcEEEEeccC------CCCCcchhhHHHHHHHHhc
Confidence 000 123444555 678999999999999665 7999999999999988765
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-59 Score=515.67 Aligned_cols=486 Identities=19% Similarity=0.221 Sum_probs=386.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhhHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
...++.++|.+++. ++++|+++. + +++||.||++++.++|++|.++ |+++|++|+++++|++++++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 34679999988885 788998764 2 5799999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
+||+++|++++|+++.++.+++.++++.++++++|++++....+.... ..+ .++..+. .
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~ 130 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P 130 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence 999999999999999999999999999999999999987665433321 111 2222221 1
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.+.+++..............++++++++|||||||.||+|+++|.++......+...+ +++.+|+++..+|++|.
T Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~ 205 (529)
T PRK07867 131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS 205 (529)
T ss_pred cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence 2344333222222223345779999999999999999999999999998888877766 77889999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 281 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
.++.. +..++..|+++++.+. ++..+++.++++++|++.++|+.+..++.....
T Consensus 206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~------------------------ 261 (529)
T PRK07867 206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER------------------------ 261 (529)
T ss_pred HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc------------------------
Confidence 99866 5667999999988765 899999999999999999999998876541100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccC
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (663)
.. ...+++|. ++||+.+++.. ..+.+.+|+++++.||+||++..+..... ....
T Consensus 262 ---------~~------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~ 315 (529)
T PRK07867 262 ---------PD------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG 315 (529)
T ss_pred ---------cc------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence 00 00036774 56888887765 55666779999999999999865543321 2236
Q ss_pred ccCccccCeEEEEeecCCCccccCCCCC------------CCeEEE-ccCcccccccCChhhhhccccCCceecCcEEEE
Q 006047 439 TVGPPVPNVDVCLESVPEMEYDALSSTP------------RGEVCV-KGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEW 505 (663)
Q Consensus 439 ~~G~p~~~~~v~iv~~~~~~~~~~~~g~------------~Gel~v-~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 505 (663)
++|.|+++ +++++.+.+.. ++.|+ .|||++ +|++++.||+++++.+.+.|.+|||+|||+|++
T Consensus 316 ~~g~~~~~--~~i~~~~~~~~--~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~ 391 (529)
T PRK07867 316 ALGPLPPG--VAIVDPDTGTE--CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR 391 (529)
T ss_pred CcCCCCCC--EEEEECCCCCC--CCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence 79999999 66777333433 34455 899999 999999999999999998889999999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
+++|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.+++++++.++. .
T Consensus 392 ~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~----------~--- 457 (529)
T PRK07867 392 DADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGA----------K--- 457 (529)
T ss_pred eCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCC----------C---
Confidence 999999999999999997 8999999999999999999999999998754 5888888876532 0
Q ss_pred hhhhcChHHHHHHHHHHHHHHHH-cCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 583 KSLCENPKAKEFILGELSRVAKE-KKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~-~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.. . +++++++.+ ..|+++++|..+.+++.. |+|++||++|++|+++..++
T Consensus 458 ---~~----~----~~l~~~~~~~~~l~~~~~P~~i~~~~~i------P~t~~GKv~r~~L~~~~~~~ 508 (529)
T PRK07867 458 ---FD----P----DAFAEFLAAQPDLGPKQWPSYVRVCAEL------PRTATFKVLKRQLSAEGVDC 508 (529)
T ss_pred ---CC----H----HHHHHHHHhhccCCcccCCeEEEEeecc------CCCCCcceeHHHHHHhcCCC
Confidence 01 1 223333332 359999999999999665 79999999999999987554
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=521.93 Aligned_cols=518 Identities=20% Similarity=0.255 Sum_probs=393.9
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.|++..|...+..+|+++|+++. + ..+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 46899999999999999999754 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCc------CCCCcEEEEecCCChhhHHHHhhcCc
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKT------TEHLKTIVSFSKVKPEQREEIEKYGL 197 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~------~~~~~~ii~~~~~~~~~~~~~~~~~~ 197 (663)
+++|++++|+++.++.+++.++|+.++++++++++...+......... ......++.+..........-.....
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 999999999999999999999999999999999987655433322110 01122344443211000000000011
Q ss_pred EEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh
Q 006047 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (663)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 277 (663)
+...+.+++...............++.++++|||||||.||+|.+||.++..........+ ++..++++++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~ 245 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM 245 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence 2345666655432111111222345678899999999999999999999876665544444 67889999999999
Q ss_pred hhHHHHHHHH-HHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 278 AHIFDRAIEE-VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 278 ~~~~g~~~~~-~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
+|..++...+ ..+..|.++++...++..+++.++++++|+++++|+++..+.+...... .
T Consensus 246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~----------------- 306 (567)
T PLN02479 246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET--I----------------- 306 (567)
T ss_pred hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc--c-----------------
Confidence 9999986643 4566777776665699999999999999999999999998865321100 0
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccC--CC--
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL--PN-- 432 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~--~~-- 432 (663)
...++++.++++|+++++.+.+.+++. +.++++.||+||+++.+.... ..
T Consensus 307 -------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~ 360 (567)
T PLN02479 307 -------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
T ss_pred -------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence 011478999999999999999988875 899999999999865433221 00
Q ss_pred ------CccccCccCccccCeE-EEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEE
Q 006047 433 ------EMSMIGTVGPPVPNVD-VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEW 505 (663)
Q Consensus 433 ------~~~~~~~~G~p~~~~~-v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 505 (663)
......+.|.+.++++ +++++.+++..++.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++
T Consensus 361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~ 440 (567)
T PLN02479 361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK 440 (567)
T ss_pred ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence 0011135688888875 788873344444443346899999999999999999999999999999999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
+++|+++++||.+|+|++ +|++|+|.+||..|..||.|.+|+|++.+++ +.+++++++..+..
T Consensus 441 ~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~------------- 506 (567)
T PLN02479 441 HPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVD------------- 506 (567)
T ss_pred cCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccc-------------
Confidence 999999999999999996 8999999999999999999999999997654 58899998776420
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 583 KSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
....+...++|.++++ .+|+.++.|+.+.+.+ . |+|++||++|++|++.+.+
T Consensus 507 ------~~~~~~~~~~l~~~~~-~~l~~~~~P~~~~~~~-i------P~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 507 ------KSDEAALAEDIMKFCR-ERLPAYWVPKSVVFGP-L------PKTATGKIQKHVLRAKAKE 558 (567)
T ss_pred ------ccchhhhHHHHHHHHH-hhcccccCCceEEecc-C------CCCCccCeeHHHHHHHHHh
Confidence 0011233456666666 6899999999887633 2 7999999999999887554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=565.91 Aligned_cols=507 Identities=22% Similarity=0.270 Sum_probs=404.0
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
....+++.+.|.++++++|+++|++.. ++ +.+||+||.++++++|++|.+ ++++||+|+++++|+++++++
T Consensus 611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~ 681 (1146)
T PRK08633 611 KEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALA 681 (1146)
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHH
Confidence 455788999999999999999999753 22 469999999999999999987 489999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCC-CcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP-KTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~-~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
+|||+++|++++|+++..+.+++.+++++++++++++++.....+..... ...+....++..++...... .
T Consensus 682 ~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 753 (1146)
T PRK08633 682 NLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------K 753 (1146)
T ss_pred HHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------h
Confidence 99999999999999999999999999999999999998766555432110 01122334444432111000 0
Q ss_pred EEeHHHHHhccccc-----CCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 006047 199 VYSWDEFLQLGENK-----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (663)
Q Consensus 199 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~ 273 (663)
...+.+........ ........++++++++|||||||.||+|.+||+++...+......+ +..++|++++
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~ 828 (1146)
T PRK08633 754 VDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILS 828 (1146)
T ss_pred hHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 00111111110000 0001345679999999999999999999999999999888877666 6789999999
Q ss_pred cCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 274 ~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
.+|++|.+|+.. .+.+++.|+++++.+. ++..+++.++++++|++.++|++++.+.+....
T Consensus 829 ~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------- 892 (1146)
T PRK08633 829 SLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL---------------- 892 (1146)
T ss_pred cCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----------------
Confidence 999999999976 6778999999988764 889999999999999999999999887642110
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccC
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (663)
+ +...+++|.+++||+++++++.+.+++.++.++++.||+||++..+....
T Consensus 893 ---------------------~--------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~ 943 (1146)
T PRK08633 893 ---------------------H--------PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNL 943 (1146)
T ss_pred ---------------------C--------cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEec
Confidence 0 01125899999999999999999999989999999999999987665443
Q ss_pred CCC---------ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccC----Cce
Q 006047 431 PNE---------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD----GWF 497 (663)
Q Consensus 431 ~~~---------~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~----g~~ 497 (663)
+.. .....++|+|+|+++++|+|.+++ .+++.|+.|||+++|++++.||+++++.+.+.+.+ |||
T Consensus 944 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633 944 PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETF--EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred CcccccccccccCCCCCCccccCCCCEEEEEcCCCC--ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence 211 123478999999999999993334 45567899999999999999999999999888866 999
Q ss_pred ecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCc--CcceEEEEeeCCC---CeEEEEEecChHHHHHH
Q 006047 498 HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVS--AIDSVWVYGNSFE---SFLVAIVNPNKDALERW 572 (663)
Q Consensus 498 ~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~--~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~ 572 (663)
+|||+|++|+||++++.||.+|+|++ +|++|+|.|||++|.+|| .+.+|+|++.+++ +.+++++++...
T Consensus 1022 ~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~----- 1095 (1146)
T PRK08633 1022 VTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAE----- 1095 (1146)
T ss_pred ECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCcc-----
Confidence 99999999999999999999999996 899999999999999999 4677999987764 578888875321
Q ss_pred HHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 573 AAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
+ .+++++++.+..+++++.|..++++++. |+|++||++|++|++...++
T Consensus 1096 ---------------~-------~~~l~~~~~~~~l~~~~~P~~i~~~~~i------P~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1096 ---------------D-------VEELKRAIKESGLPNLWKPSRYFKVEAL------PLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred ---------------C-------HHHHHHHHHhcCCCcccCCcEEEEecCc------CCCCCCCCcHHHHHHHHHHh
Confidence 1 1234444444579999999999998766 89999999999999887654
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=518.22 Aligned_cols=513 Identities=22% Similarity=0.289 Sum_probs=399.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
....++.++|..+++++|+++|+++. + +.+||.||+++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus 20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~ 90 (557)
T PRK07059 20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI 90 (557)
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 34578999999999999999999865 3 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhh-HHHH-------
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQ-REEI------- 192 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-~~~~------- 192 (663)
|||+++|++++|++|.++.+++.++++.++++++++++.....+...... ...+.++......... ...+
T Consensus 91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (557)
T PRK07059 91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRR 168 (557)
T ss_pred HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEeccccccccccccccccccc
Confidence 99999999999999999999999999999999999987765444333221 1223333221100000 0000
Q ss_pred ------hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccc-c-
Q 006047 193 ------EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE-K- 264 (663)
Q Consensus 193 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~-~- 264 (663)
.........+.+++..............++++++++|||||||.||+|.++|.+++.++......+..... .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 248 (557)
T PRK07059 169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP 248 (557)
T ss_pred ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence 00001223455555443332333445678899999999999999999999999998776554333211000 0
Q ss_pred CCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCCh
Q 006047 265 LTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341 (663)
Q Consensus 265 ~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~ 341 (663)
......+++.+|++|.+++.. .+.++..|++.++.+. ++..+++.++++++|.+.++|.++..+.....
T Consensus 249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------- 320 (557)
T PRK07059 249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD-------- 320 (557)
T ss_pred CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC--------
Confidence 113457788999999988754 5667888888776654 78999999999999999999999988764210
Q ss_pred hHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccc
Q 006047 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421 (663)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE 421 (663)
.... ..+++|.++.||+++++.+.+.+.+.+++++++.||+||
T Consensus 321 -----------------------------~~~~--------~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 363 (557)
T PRK07059 321 -----------------------------FDKL--------DFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE 363 (557)
T ss_pred -----------------------------cCcC--------CchhheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence 0000 114789999999999999999999889999999999999
Q ss_pred cccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecC
Q 006047 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500 (663)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TG 500 (663)
++.++............++|.|++++++++++ +++. +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus 364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG 440 (557)
T PRK07059 364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGN--DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG 440 (557)
T ss_pred ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence 98876655433333457899999999999998 6554 45677999999999999999999999988877 68999999
Q ss_pred cEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcC
Q 006047 501 DIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENG 577 (663)
Q Consensus 501 Dlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~ 577 (663)
|+|+++++|++++.||.+|+|++ +|++|+|.+||+++.++|+|.+++|++.++. +.++++++..+..
T Consensus 441 Dl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~--------- 510 (557)
T PRK07059 441 DVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA--------- 510 (557)
T ss_pred cEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC---------
Confidence 99999999999999999999996 8999999999999999999999999986543 5788888755421
Q ss_pred CCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 578 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
.+ .+++.+++. ..|+.++.|..+.+++.. |+|++||++|+.|+++
T Consensus 511 ---------~~-------~~~l~~~~~-~~l~~~~~P~~i~~v~~~------P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 511 ---------LT-------EEDVKAFCK-ERLTNYKRPKFVEFRTEL------PKTNVGKILRRELRDG 555 (557)
T ss_pred ---------CC-------HHHHHHHHH-HhcccccCCcEEEEeccC------CCCcccceeHHHHHhh
Confidence 00 124445555 578899999999998665 7999999999999764
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=510.56 Aligned_cols=474 Identities=21% Similarity=0.284 Sum_probs=380.7
Q ss_pred HHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeE
Q 006047 51 RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHC 130 (663)
Q Consensus 51 ~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 130 (663)
+.++..+||++|+... ... +.+||.||++.+.++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 4567889999998753 111 579999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhccc
Q 006047 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE 210 (663)
Q Consensus 131 v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (663)
+|+++.++.+++..+++.++++++++++....... .. ..++++.....
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~---------------------~~~~~~~~~~~ 122 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------DV---------------------EDLAAFIASAD 122 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------cc---------------------cchhhhhhhcc
Confidence 99999999999999999999999999865332100 00 11122221111
Q ss_pred c-cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-HHH
Q 006047 211 N-KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEV 288 (663)
Q Consensus 211 ~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~ 288 (663)
. ..........+++++++|||||||.||+|.++|+++......+.... ....++++++.+|++|.+++.. +..
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~ 197 (488)
T PRK09088 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP 197 (488)
T ss_pred ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence 1 11112234568899999999999999999999999988777666554 5778999999999999999876 666
Q ss_pred HHHcCcEEEEEcC-CHHHHHHHhh--hcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCC
Q 006047 289 FISNGAAIGFWRG-DVKLLLEDIG--ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (663)
Q Consensus 289 ~l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (663)
++..|+++++.+. ++..++..+. ++++|.++++|.++..+.+...
T Consensus 198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~-------------------------------- 245 (488)
T PRK09088 198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG-------------------------------- 245 (488)
T ss_pred HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence 7899999988765 7888888885 5899999999999987753110
Q ss_pred CcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCC--CccccCccCcc
Q 006047 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN--EMSMIGTVGPP 443 (663)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~--~~~~~~~~G~p 443 (663)
... ...+++|.+++||++++....+.+.+. ++++++.||+||++......... .....+++|.|
T Consensus 246 -----~~~--------~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~ 311 (488)
T PRK09088 246 -----FDA--------AALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP 311 (488)
T ss_pred -----cCc--------cccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence 000 011479999999999999988777754 89999999999998754322111 11234789999
Q ss_pred ccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccceee
Q 006047 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFK 522 (663)
Q Consensus 444 ~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~ 522 (663)
+++++++|+| +++. +++.|+.|||+++|++++.||+++++.+++.+ .+|||+|||+|+++++|.+++.||.+|+|+
T Consensus 312 ~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~ 388 (488)
T PRK09088 312 TPTVQTRVVD-DQGN--DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI 388 (488)
T ss_pred CCCcEEEEEC-CCCC--CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence 9999999998 6654 45567999999999999999999999888877 589999999999999999999999999999
Q ss_pred cCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHH
Q 006047 523 LSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEL 599 (663)
Q Consensus 523 i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 599 (663)
+ +|.+++|.+||++|..+|+|.+++|++.+++ +..+++|++.++. . .. .+.+
T Consensus 389 ~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~-------------------~-~~----~~~l 443 (488)
T PRK09088 389 S-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA-------------------P-LD----LERI 443 (488)
T ss_pred e-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC-------------------C-CC----HHHH
Confidence 6 8999999999999999999999999997653 5678888876532 0 01 1334
Q ss_pred HHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 600 SRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 600 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.++++ ..++++++|..|.+++.. |+|++||++|++|++++.+.
T Consensus 444 ~~~~~-~~l~~~~~p~~i~~~~~i------P~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 444 RSHLS-TRLAKYKVPKHLRLVDAL------PRTASGKLQKARLRDALAAG 486 (488)
T ss_pred HHHHH-hhCcCCCCCCEEEEcccC------CCCCCCceeHHHHHHHHHhc
Confidence 44454 578899999999998665 89999999999999998764
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-59 Score=516.29 Aligned_cols=484 Identities=19% Similarity=0.206 Sum_probs=379.9
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV-EERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.++.++|..++ +|+++|+++. + ..+||.||.++++++|.+|.+.|+ ++||+|+++++|+++++++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 46888888764 7999999764 2 469999999999999999999999 8999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|++|.++.+++..+++.++++++|++++....+.+.. .+..+ ++.++.. .+
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~ 131 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY 131 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence 9999999999999999999999999999999999887665443321 12222 2332211 12
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
.+++..... ..+.....++++++++|||||||.||+|.++|.++......+...+ ++..+|+++..+|++|.++
T Consensus 132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 205 (540)
T PRK13388 132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA 205 (540)
T ss_pred hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence 233221111 1122235679999999999999999999999999998888777766 7889999999999999988
Q ss_pred HHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 283 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
+.. ++.++..|+++++.+. ++..+++.++++++|++..+|..+..+.....
T Consensus 206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~--------------------------- 258 (540)
T PRK13388 206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE--------------------------- 258 (540)
T ss_pred hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC---------------------------
Confidence 876 4557999999988765 89999999999999999999998887653110
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCcc
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~ 440 (663)
.+ . ....+++.+ + |+++++.....+.+.+++++++.||+||++.++.... ....+++
T Consensus 259 -------~~--~---------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~v 315 (540)
T PRK13388 259 -------RP--D---------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSI 315 (540)
T ss_pred -------Cc--c---------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCC
Confidence 00 0 000356643 3 5567788888888888999999999999987665432 1234789
Q ss_pred CccccCeEEE-----------EeecCCCccccCCCCCCCeEEEc-cCcccccccCChhhhhccccCCceecCcEEEEcCC
Q 006047 441 GPPVPNVDVC-----------LESVPEMEYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD 508 (663)
Q Consensus 441 G~p~~~~~v~-----------iv~~~~~~~~~~~~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~ 508 (663)
|+|++++++. ++| +++... ...+..|||+++ |+.++.||+++++.+.+.|.+|||+|||+|++++|
T Consensus 316 G~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~-~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~d 393 (540)
T PRK13388 316 GRGAPGVAIYNPETLTECAVARFD-AHGALL-NADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDAD 393 (540)
T ss_pred CCCCCCcEEEcCCCCccccceecc-Cccccc-cCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCC
Confidence 9999997653 222 222211 134578999998 99999999999999999888999999999999999
Q ss_pred CcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhh
Q 006047 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSL 585 (663)
Q Consensus 509 G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 585 (663)
|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.+++++++.++.
T Consensus 394 g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~----------------- 455 (540)
T PRK13388 394 GWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGA----------------- 455 (540)
T ss_pred CcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCC-----------------
Confidence 999999999999997 8999999999999999999999999997754 4677777776532
Q ss_pred hcChHHHHHHHHHHHHHHHH-cCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 586 CENPKAKEFILGELSRVAKE-KKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 586 ~~~~~~~~~i~~~l~~~~~~-~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
. -.. +++++++.. ..|+++++|..++++++. |+|++||++|++|+++..
T Consensus 456 -~--~~~----~~l~~~l~~~~~l~~~~~P~~~~~v~~i------P~t~~GKv~R~~L~~~~~ 505 (540)
T PRK13388 456 -T--FDP----DAFAAFLAAQPDLGTKAWPRYVRIAADL------PSTATNKVLKRELIAQGW 505 (540)
T ss_pred -c--CCH----HHHHHHHHhhccCCcccCCcEEEEeccC------CCCCcceeeHHhHHHhcc
Confidence 0 001 223333331 369999999999988665 799999999999988753
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=515.77 Aligned_cols=510 Identities=23% Similarity=0.360 Sum_probs=395.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
..++.++|.++++.+|+++|++.. + +.+||.||.++++++|.+|. +.|+++||+|+++++|++++++++|
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 467999999999999999999864 2 56999999999999999997 6899999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCCh----hhH--H-----
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP----EQR--E----- 190 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~--~----- 190 (663)
||+++|++++|++|.++.+++..++..++++++++++.....+....... ....++....... ... .
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence 99999999999999999999999999999999999987665544433221 1233333211000 000 0
Q ss_pred ---HHhh-cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCC
Q 006047 191 ---EIEK-YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (663)
Q Consensus 191 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (663)
.... ......++.+................++++++++|||||||.||+|.++|.++...+......+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~ 251 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLE 251 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccC
Confidence 0000 0011223444444332222233445678999999999999999999999999988777655443111 0133
Q ss_pred CC-cEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChh
Q 006047 267 SE-DVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342 (663)
Q Consensus 267 ~~-d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~ 342 (663)
.+ +++++.+|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|..+..+.+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------- 322 (560)
T PRK08751 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG--------- 322 (560)
T ss_pred CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC---------
Confidence 33 57788899999999865 5566777777766543 88999999999999999999999988764110
Q ss_pred HHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeeccccccc
Q 006047 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422 (663)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~ 422 (663)
....++ +++|.+++||+++++.+.+.+++.++..+++.||+||+
T Consensus 323 ----------------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 366 (560)
T PRK08751 323 ----------------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET 366 (560)
T ss_pred ----------------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence 001111 47999999999999999999999889999999999999
Q ss_pred ccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCc
Q 006047 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGD 501 (663)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD 501 (663)
+..+..+........+++|.|+++++++++| +++. +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||
T Consensus 367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 443 (560)
T PRK08751 367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGT--VLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD 443 (560)
T ss_pred CCceecccccccccCCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence 8766554433223347899999999999999 6664 45567999999999999999999999988887 679999999
Q ss_pred EEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCC
Q 006047 502 IGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGV 578 (663)
Q Consensus 502 lg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~ 578 (663)
+|+++++|++++.||.+|+|++ +|++|+|.+||+.|..+|+|.+|+|++.++. +.++++++.....
T Consensus 444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~---------- 512 (560)
T PRK08751 444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA---------- 512 (560)
T ss_pred eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC----------
Confidence 9999999999999999999997 8999999999999999999999999997654 4667777654311
Q ss_pred CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 579 NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
.. .+.+++++. ..++++++|..+.+++.. |+|.+||++|++|++.
T Consensus 513 -------~~--------~~~l~~~~~-~~l~~~~~P~~v~~v~~l------P~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 513 -------LT--------AEDVKAHAR-ANLTGYKQPRIIEFRKEL------PKTNVGKILRRELRDA 557 (560)
T ss_pred -------CC--------HHHHHHHHH-HhhhhccCCeEEEEhhhC------CCCccccccHHHHHHh
Confidence 01 123334444 578899999999998665 7999999999999876
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=514.18 Aligned_cols=512 Identities=24% Similarity=0.300 Sum_probs=395.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.++|.++++.+|+++|++.. + +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3468999999999999999999764 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh--hhHhhcCCCcCCCCcEEEEecCCChhhH--HHH-hhcC
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHLKTIVSFSKVKPEQR--EEI-EKYG 196 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~--~~~~~~~~~~~~~~~~ii~~~~~~~~~~--~~~-~~~~ 196 (663)
||+++|++++|++|.++.+++.++++.++++++++++... ....+.... ..+..++.......... ... ....
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD 167 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence 9999999999999999999999999999999999986421 111111111 12234444332110000 000 0001
Q ss_pred cEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhh-ccccCCCCcEEEEcC
Q 006047 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES-VNEKLTSEDVYVSYL 275 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~-~~~~~~~~d~~~~~~ 275 (663)
....++.+++..... ........++++++++|||||||.||+|.++|.++....... ..+.. ........+++++..
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 245 (541)
T TIGR03205 168 PRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVL 245 (541)
T ss_pred cccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEec
Confidence 123445555543221 122234567899999999999999999999999987655422 11100 001223457899999
Q ss_pred ChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006047 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (663)
Q Consensus 276 p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (663)
|++|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|+.+..+++...
T Consensus 246 p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 305 (541)
T TIGR03205 246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------- 305 (541)
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--------------------
Confidence 9999988866 5667899999888765 89999999999999999999999988753100
Q ss_pred hHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC
Q 006047 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (663)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (663)
... ...+++|.+++||+++++++.+++.+.++.++++.||+||++..+.......
T Consensus 306 -----------------~~~--------~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~ 360 (541)
T TIGR03205 306 -----------------LEK--------RDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEG 360 (541)
T ss_pred -----------------ccc--------cCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCC
Confidence 000 0114799999999999999999998888999999999999987766554333
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEE
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~ 513 (663)
.....++|.|++++.+++++.+ ....+++.|+.|||+++|++++.||+++++.+.+.|.++||+|||+++++++|++++
T Consensus 361 ~~~~~~~G~~~~~~~~~v~~~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i 439 (541)
T TIGR03205 361 PDKPGSIGLMLPGIELDVVSLD-DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFL 439 (541)
T ss_pred CCCCCCcceeccCceeEEEecC-CCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEE
Confidence 3334789999999999887522 223455678999999999999999999999999889899999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.+|+|++ +|++++|.+||+++.++++|.+++|++.+++ +.+++++++.++. ...
T Consensus 440 ~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------------------~~~ 499 (541)
T TIGR03205 440 VDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGA-------------------KPF 499 (541)
T ss_pred EccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCC-------------------CcC
Confidence 9999999996 8999999999999999999999999987643 5788888876532 000
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
. .+.+.++++ ++|+++++|+.|.++++. |+|++||++|++|+
T Consensus 500 ~----~~~l~~~~~-~~l~~~~~P~~i~~~~~i------P~t~~gK~~r~~l~ 541 (541)
T TIGR03205 500 S----LDELRAFLA-GKLGKHELPVAVEFVDEL------PRTPVGKLSRHELR 541 (541)
T ss_pred C----HHHHHHHHH-hhcccccCCcEEEEeccC------CCCcccceeHhhcC
Confidence 0 123444554 679999999999999665 79999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=614.29 Aligned_cols=484 Identities=18% Similarity=0.225 Sum_probs=403.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
.+...++.++|+++++++||++|+++. + +++||+||+++++++|+.|.+.|+++|++|+|+++|+++++++
T Consensus 3091 ~~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~ 3161 (3956)
T PRK12467 3091 YPSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVA 3161 (3956)
T ss_pred CCccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHH
Confidence 344579999999999999999999876 3 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
+|||+++|++++|++|.++.+++.++++.++++++|++......+.... ...++.++.
T Consensus 3162 ~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~------~~~~~~~~~---------------- 3219 (3956)
T PRK12467 3162 LLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA------GDTALTLDR---------------- 3219 (3956)
T ss_pred HHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc------CCceeeecc----------------
Confidence 9999999999999999999999999999999999999876544321111 011222221
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
..........+.....+++++|++|||||||.||||+++|+++.+.+......+ +++++|+++++.|++|
T Consensus 3220 -----~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~f 3289 (3956)
T PRK12467 3220 -----LDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSF 3289 (3956)
T ss_pred -----hhhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccH
Confidence 100011112223345789999999999999999999999999999999888877 8899999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 280 IFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 280 ~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
..+...++.+++.|+++++++. ++..+++.|+++++|++.++|+++..+++...
T Consensus 3290 d~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~----------------------- 3346 (3956)
T PRK12467 3290 DGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG----------------------- 3346 (3956)
T ss_pred hHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc-----------------------
Confidence 9888888999999999999874 78999999999999999999999988754210
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCc-
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM- 434 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~- 434 (663)
....++||.+++|||++++++.+.+.+.+ +..+++.||+||++..++.......
T Consensus 3347 ------------------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 3402 (3956)
T PRK12467 3347 ------------------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDA 3402 (3956)
T ss_pred ------------------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEeccccc
Confidence 00115799999999999999999988766 6789999999999876654332211
Q ss_pred ---cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cC-------CceecCcEE
Q 006047 435 ---SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD-------GWFHTGDIG 503 (663)
Q Consensus 435 ---~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~-------g~~~TGDlg 503 (663)
....++|+|+++++++|+| +++. +++.|+.|||+|+|+.+++||+++++.|++.| .+ +||||||+|
T Consensus 3403 ~~~~~~~~iG~p~~~~~~~v~d-~~~~--~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~ 3479 (3956)
T PRK12467 3403 VCEAPYAPIGRPVAGRSIYVLD-GQLN--PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLA 3479 (3956)
T ss_pred ccCCCCCCCccccCCCEEEEEC-CCCC--CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhh
Confidence 1236899999999999998 5554 56678999999999999999999999999988 33 369999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGD 581 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~ 581 (663)
++++||+|+++||.||+||+ +|++|+|.|||++|.++|+|.+|+|++.++ ++.++|+|++..+.
T Consensus 3480 ~~~~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~------------- 3545 (3956)
T PRK12467 3480 RYRADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQ------------- 3545 (3956)
T ss_pred eecCCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCC-------------
Confidence 99999999999999999998 799999999999999999999999998643 46899999987531
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 582 FKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 582 ~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
+...+.|+++++ ..||.|++|..|++++.. |+|++||++|++|.+.+
T Consensus 3546 -----------~~~~~~l~~~l~-~~Lp~y~vP~~~~~l~~l------P~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467 3546 -----------GDWRETLRDHLA-ASLPDYMVPAQLLVLAAM------PLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred -----------cccHHHHHHHHh-ccCChhhCCCeeeeeccC------CCCCCCccchhhcCCCC
Confidence 012244555555 789999999999988765 89999999999997654
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-59 Score=524.29 Aligned_cols=499 Identities=20% Similarity=0.236 Sum_probs=385.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
....++.++|.++++++|+++|+++. + +.+||+||+++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus 34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~ 104 (600)
T PRK08279 34 DSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW 104 (600)
T ss_pred CCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 45678999999999999999999865 3 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++++++.++.+++.++++.++++++|++++....+....... .....++..+..... ...
T Consensus 105 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~ 173 (600)
T PRK08279 105 LGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------DPE 173 (600)
T ss_pred HHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------ccc
Confidence 999999999999999999999999999999999999987766554433222 122233333221100 011
Q ss_pred eHHHHHhccccc----CCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCC
Q 006047 201 SWDEFLQLGENK----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (663)
Q Consensus 201 ~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 276 (663)
.+.++....... .........+++++++|||||||.||+|.+||.++.+++..+...+ ++.++|++++.+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~p 248 (600)
T PRK08279 174 GYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLP 248 (600)
T ss_pred cHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEecC
Confidence 233333211111 1122334678999999999999999999999999999998877766 7889999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 006047 277 LAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (663)
Q Consensus 277 ~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..++......
T Consensus 249 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~------------------- 309 (600)
T PRK08279 249 LYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP------------------- 309 (600)
T ss_pred chhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc-------------------
Confidence 999999876 5556888999888776 8999999999999999999999988765421000
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCC-ceeecccccccccceeccCCCC
Q 006047 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPNE 433 (663)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~ 433 (663)
. ....+++.+ +|+.+++++.+.+.+.++. .+++.||+||++..+... .
T Consensus 310 -------------~-------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~-- 358 (600)
T PRK08279 310 -------------T-------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-F-- 358 (600)
T ss_pred -------------c-------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-C--
Confidence 0 001357754 4777999999999988876 599999999987543322 1
Q ss_pred ccccCccCcccc----CeEE---------EEeecCCCccccCCCCCCCeEE--EccCcccccccCChhhhhccc------
Q 006047 434 MSMIGTVGPPVP----NVDV---------CLESVPEMEYDALSSTPRGEVC--VKGSTVFSGYYKREDLTKEVM------ 492 (663)
Q Consensus 434 ~~~~~~~G~p~~----~~~v---------~iv~~~~~~~~~~~~g~~Gel~--v~g~~~~~gy~~~~~~~~~~~------ 492 (663)
....++|.+.+ +..+ .+.+ .++...+++.|+.|||+ +.|+.++.|| +++..+.+.|
T Consensus 359 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~ 435 (600)
T PRK08279 359 -NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK 435 (600)
T ss_pred -CCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC
Confidence 12356776655 3322 2223 33444456778999998 7799999999 8887776654
Q ss_pred -cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC----CCeEEEEEecChH
Q 006047 493 -VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF----ESFLVAIVNPNKD 567 (663)
Q Consensus 493 -~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~----~~~~~a~v~~~~~ 567 (663)
.++||+|||+|++++||++++.||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.++ +...+++++...+
T Consensus 436 ~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~ 514 (600)
T PRK08279 436 KGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADG 514 (600)
T ss_pred CCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCC
Confidence 2579999999999999999999999999997 899999999999999999999999998653 2334555554432
Q ss_pred HHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 568 ALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
. . .-.++++++++ .+|++|++|+.|++++.. |+|.+||++|++|++++.
T Consensus 515 ~--------------------~----~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~ 563 (600)
T PRK08279 515 A--------------------E----FDLAALAAHLY-ERLPAYAVPLFVRLVPEL------ETTGTFKYRKVDLRKEGF 563 (600)
T ss_pred c--------------------c----CCHHHHHHHHH-hhCccccCCeEEEeecCC------CCCcchhhhHHHHhhcCC
Confidence 1 0 00234555555 689999999999999665 799999999999998865
Q ss_pred HH
Q 006047 648 VT 649 (663)
Q Consensus 648 ~~ 649 (663)
+.
T Consensus 564 ~~ 565 (600)
T PRK08279 564 DP 565 (600)
T ss_pred Cc
Confidence 54
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=511.68 Aligned_cols=484 Identities=19% Similarity=0.234 Sum_probs=391.2
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
++.+.|.+.++.+|+++|+... + +.+||+||++++.++|..|.+.|+++|++|+++++|+.++++++|||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5789999999999999999754 2 569999999999999999999999999999999999999999999999
Q ss_pred hcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHH
Q 006047 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (663)
Q Consensus 125 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (663)
++|++++|+++.++.+++..+++.++++.++++++....... .. ++.+.. ...
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~ 124 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ 124 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence 999999999999999999999999999999998765332211 11 121111 111
Q ss_pred HHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHH
Q 006047 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284 (663)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 284 (663)
+...... ........+++.++++|||||||.||+|.++|.++..........+ ....+++++...|++|..++.
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~ 198 (502)
T TIGR01734 125 AETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM 198 (502)
T ss_pred hhhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence 1111111 1112234678999999999999999999999999999888776665 778899999999999999888
Q ss_pred HHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 285 IEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 285 ~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
.++.++..|+++++.+. ++..+++.+.++++|.+.++|+++..++.....
T Consensus 199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~-------------------------- 252 (502)
T TIGR01734 199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF-------------------------- 252 (502)
T ss_pred HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence 88889999999998764 788999999999999999999998766431100
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCC----Ccc
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN----EMS 435 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~----~~~ 435 (663)
.....++++.++++|+++++++.+.+.+.+ ++.+++.||+||++..+...... ...
T Consensus 253 -------------------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01734 253 -------------------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY 313 (502)
T ss_pred -------------------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence 001115799999999999999999988877 78999999999987544432211 112
Q ss_pred ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc----cCCceecCcEEEEcCCCcE
Q 006047 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTGDIGEWQPDGSL 511 (663)
Q Consensus 436 ~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----~~g~~~TGDlg~~~~~G~l 511 (663)
...++|.|.++++++|++ +++. +++.|+.|||+++|+.++.||+++++.+.+.| .++||+|||+|+++++ ++
T Consensus 314 ~~~~vg~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l 389 (502)
T TIGR01734 314 PRLPIGFAKPDMNLFIMD-EEGE--PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL 389 (502)
T ss_pred CccccccccCCCEEEEEC-CCCC--CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence 235799999999999999 6654 45567999999999999999999999888776 2359999999999966 99
Q ss_pred EEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeC--C--CCeEEEEEecChHHHHHHHHHcCCCCChhhhhc
Q 006047 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNS--F--ESFLVAIVNPNKDALERWAAENGVNGDFKSLCE 587 (663)
Q Consensus 512 ~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~--~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (663)
++.||.+|+|++ +|++|+|.+||+.+.++|+|++|++++.. + .+.++++|++..+..
T Consensus 390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~------------------ 450 (502)
T TIGR01734 390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDF------------------ 450 (502)
T ss_pred EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccccc------------------
Confidence 999999999996 89999999999999999999999999843 2 257889998876431
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 588 NPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 588 ~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
+....+.++|++.++ +.|++++.|+.+++++.. |+|++||++|++|++++.
T Consensus 451 --~~~~~~~~~i~~~~~-~~l~~~~~P~~~~~v~~l------P~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 451 --EKEFQLTKAIKKELK-KSLPAYMIPRKFIYRDQL------PLTANGKIDRKALAEEVN 501 (502)
T ss_pred --ccchhhHHHHHHHHh-hhChhhcCCcEEEEcccc------CCCCCCcccHHHHHHhhc
Confidence 111223345555555 689999999999999766 799999999999998763
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=515.39 Aligned_cols=512 Identities=24% Similarity=0.350 Sum_probs=394.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
+.+++.++|...++.+|+++|+++. + +.+||+||++++.++|.+|.+.|+++||+|+++++|++++++++|
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3468999999999999999999865 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCC----hhhH--HHHhhc
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK----PEQR--EEIEKY 195 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~----~~~~--~~~~~~ 195 (663)
||+++|++++|++|.++.+++..+++.++++++++++.....+...... .....++...... +... ..++..
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK 170 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence 9999999999999999999999999999999999988655433222111 1122222211000 0000 000000
Q ss_pred Cc----------EEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccC
Q 006047 196 GL----------AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (663)
Q Consensus 196 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~ 265 (663)
.. ....|..+.... ...........+++++++|||||||.||+|.++|.++..........+ ...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~ 245 (563)
T PRK06710 171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNC 245 (563)
T ss_pred cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCC
Confidence 00 000111111111 111111223457899999999999999999999999876544332221 022
Q ss_pred -CCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChh
Q 006047 266 -TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342 (663)
Q Consensus 266 -~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~ 342 (663)
..++++++.+|++|.+++.. +..+++.|+++++.+. ++..+++.|+++++|++.++|+.+..+++...
T Consensus 246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------- 316 (563)
T PRK06710 246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL--------- 316 (563)
T ss_pred CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence 34568899999999998865 5567899999988765 89999999999999999999999988754110
Q ss_pred HHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeeccccccc
Q 006047 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422 (663)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~ 422 (663)
.... ..+++|.+++||+++++++.+++.+.++..+++.||+||+
T Consensus 317 ----------------------------~~~~--------~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 360 (563)
T PRK06710 317 ----------------------------LKEY--------DISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES 360 (563)
T ss_pred ----------------------------cccC--------ChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence 0000 0147899999999999999999999889999999999999
Q ss_pred ccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcE
Q 006047 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDI 502 (663)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl 502 (663)
+..............+++|.|++++.+++++.+++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+
T Consensus 361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~ 438 (563)
T PRK06710 361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETG--EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV 438 (563)
T ss_pred ccccccCcccccccCCccCCCCCCCeEEEEECCCC--ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence 87654433322333478999999999999983333 4566779999999999999999999999998889999999999
Q ss_pred EEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCC
Q 006047 503 GEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVN 579 (663)
Q Consensus 503 g~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~ 579 (663)
|+++++|+++++||.+|+|++ +|.+|+|.+||+.|.++|+|.+++|++.++. +.++++|+..++.
T Consensus 439 ~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~----------- 506 (563)
T PRK06710 439 GYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT----------- 506 (563)
T ss_pred EEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCC-----------
Confidence 999999999999999999997 8999999999999999999999999997653 5788888876532
Q ss_pred CChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 580 GDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. ..++++++++ ..++.++.|..+.+++.. |+|++||++|++|++++..
T Consensus 507 -------~~------~~~~l~~~~~-~~l~~~~~P~~~~~v~~i------P~t~~GKi~r~~L~~~~~~ 555 (563)
T PRK06710 507 -------EC------SEEELNQFAR-KYLAAYKVPKVYEFRDEL------PKTTVGKILRRVLIEEEKR 555 (563)
T ss_pred -------CC------CHHHHHHHHH-HhcccccCCcEEEEcccC------CCCccchhhHHHHHHHHhh
Confidence 00 0134455555 679999999999988665 7999999999999987754
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=509.15 Aligned_cols=498 Identities=21% Similarity=0.256 Sum_probs=403.1
Q ss_pred CCCHHHHHHHH-HHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMA-VERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~-a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
.++..+++.++ ++.+||++|++.. + ..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 34567788887 6779999999753 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++.++++.++++++++++...+.+.+..... +..+.++..+.... ....
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~ 141 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKS-PHLEHRVVVGRPEA-----------GEVQ 141 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcC-CCccEEEEeCCCCc-----------cccc
Confidence 99999999999999999999999999999999999987766555443322 44555555543211 1223
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhh-hhhhhhccccCCCCcEEEEcCChhhH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV-KCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
+.++...... ...+....++++++++|||||||.||+|.++|+++...+... ...+ +++.+|+++..+|++|.
T Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 215 (508)
T TIGR02262 142 LAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA 215 (508)
T ss_pred HHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence 4444432221 222334567899999999999999999999999998877652 3333 67899999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 281 FDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 281 ~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
.++.. ++.++..|+++++.+. ++..+++.|+++++|.++++|..+..++.....
T Consensus 216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~----------------------- 272 (508)
T TIGR02262 216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL----------------------- 272 (508)
T ss_pred HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-----------------------
Confidence 98865 5667999999988765 799999999999999999999988766431000
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcccc
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~ 437 (663)
. .....++|.+++||+++++++.+.|.+.+++++++.||+||++.+......... ..
T Consensus 273 --------------~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~ 329 (508)
T TIGR02262 273 --------------P--------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RY 329 (508)
T ss_pred --------------c--------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CC
Confidence 0 001147999999999999999999999899999999999999876554433322 23
Q ss_pred CccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeec
Q 006047 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRK 517 (663)
Q Consensus 438 ~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~ 517 (663)
+++|.|+++++++++| +++. +++.|+.|||+++|+.++.||+++++.+.+.|.++||+|||+++++++|.+++.||.
T Consensus 330 ~~~G~~~~g~~v~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~ 406 (508)
T TIGR02262 330 GTSGKPVPGYRLRLVG-DGGQ--DVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRT 406 (508)
T ss_pred CCcCCCCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccc
Confidence 7899999999999999 5554 456779999999999999999999999998888999999999999999999999999
Q ss_pred cceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHH
Q 006047 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEF 594 (663)
Q Consensus 518 ~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (663)
+|+|++ +|.+++|.+||+.|.++++|.++++++.++. ..+++++++.++. . ..+.
T Consensus 407 ~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------~---~~~~ 464 (508)
T TIGR02262 407 DDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ------------------D---IDTA 464 (508)
T ss_pred cceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC------------------c---cccc
Confidence 999997 7999999999999999999999999996543 4778888876532 0 0122
Q ss_pred HHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 595 ILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 595 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
+.+.|.+.++ ..|++++.|..+.+++.. |+|++||++|++|+++
T Consensus 465 ~~~~i~~~~~-~~l~~~~~p~~i~~~~~i------P~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 465 LETELKEHVK-DRLAPYKYPRWIVFVDDL------PKTATGKIQRFKLREG 508 (508)
T ss_pred cHHHHHHHHH-HhcccCCCCceEEEecCC------CCCCCCcEehhhccCC
Confidence 3445566666 679999999999988665 7999999999998753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-58 Score=512.22 Aligned_cols=511 Identities=19% Similarity=0.265 Sum_probs=395.3
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|+.+++.+|+++|+.+. + +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 103 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI 103 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHH
Confidence 67999999999999999999764 3 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhH----H---HHhhcC
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR----E---EIEKYG 196 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~----~---~~~~~~ 196 (663)
+++|++++|++|..+.+++.++++.++++++++++...+.+.+..... .++.++.......... . ......
T Consensus 104 ~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T PRK06178 104 LKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181 (567)
T ss_pred HHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEecccccccccccccccccccccc
Confidence 999999999999999999999999999999999988776655543322 2334443321110000 0 000000
Q ss_pred cEEEeHHHHHhccc--ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEc
Q 006047 197 LAVYSWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (663)
Q Consensus 197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~ 274 (663)
.....+.+++.... ..........++++++++|||||||.||+|.+||.+++.......... .....+++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~~l~~ 257 (567)
T PRK06178 182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSVFLSF 257 (567)
T ss_pred ccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcEEEEe
Confidence 00011112222111 111122345679999999999999999999999999987765543321 257889999999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006047 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (663)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (663)
+|++|.+|+.. ++.+++.|+++++.+. ++..++..++++++|.++++|..+..+.....
T Consensus 258 ~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~------------------- 318 (567)
T PRK06178 258 LPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR------------------- 318 (567)
T ss_pred cchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-------------------
Confidence 99999999865 6778999999999886 89999999999999999999998877653100
Q ss_pred hhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEE--ecCCCCcHHHHHHHHHhcCCceee-cccccccccceecc
Q 006047 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL--SGAAPLTPHVETFLRVVACAHVLQ-GYGLTETCAGTFVS 429 (663)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~gG~~l~~~~~~~~~~~~~~~v~~-~yG~tE~~~~~~~~ 429 (663)
.... ..++++.+. .+++.+++++.+.+++.+|..++. .||+||++..+...
T Consensus 319 ------------------~~~~--------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~ 372 (567)
T PRK06178 319 ------------------FAEY--------DLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFT 372 (567)
T ss_pred ------------------CCCC--------CcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceec
Confidence 0000 013456544 446899999999999988877775 79999987654432
Q ss_pred CC---CC---ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEE
Q 006047 430 LP---NE---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503 (663)
Q Consensus 430 ~~---~~---~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg 503 (663)
.. .. ...+.++|.|+||++++++|.+++ .+++.|+.|||+++|++++.||+++++.+...|.+|||+|||+|
T Consensus 373 ~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~--~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~ 450 (567)
T PRK06178 373 AGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG--ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIG 450 (567)
T ss_pred cccccCccccccCCcccccccCCcEEEEEcCCCC--CcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceE
Confidence 21 11 123467999999999999983333 44567799999999999999999999999888889999999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNG 580 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 580 (663)
+++++|+++++||.+|+|++ +|++++|.+||+++.++++|.++++++.+++ +.++++|++.++.
T Consensus 451 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~------------ 517 (567)
T PRK06178 451 KIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA------------ 517 (567)
T ss_pred EEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCC------------
Confidence 99999999999999999997 8999999999999999999999999986643 5788888876532
Q ss_pred ChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 581 DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
. . -.++|+++++ ..++.+++|. +.+++.. |+|++||++|++|+++++++
T Consensus 518 ------~--~----~~~~l~~~~~-~~l~~~~~p~-i~~v~~i------P~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 518 ------D--L----TAAALQAWCR-ENMAVYKVPE-IRIVDAL------PMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred ------c--C----CHHHHHHHHH-hcCcccCCce-EEEeccC------CCCCccceeHHHHHHHHHhh
Confidence 0 0 0134555555 6899999996 6666554 79999999999999988653
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=507.15 Aligned_cols=485 Identities=19% Similarity=0.208 Sum_probs=376.4
Q ss_pred HHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeE
Q 006047 51 RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHC 130 (663)
Q Consensus 51 ~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 130 (663)
-.+|+.+|+++|+... +.. +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~ 76 (501)
T PRK13390 4 GTHAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYI 76 (501)
T ss_pred chhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 3567889999999764 322 679999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhccc
Q 006047 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE 210 (663)
Q Consensus 131 v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (663)
+|+++.++.+++.++++.++++++++++........... .....+.+..... ...++++......
T Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 141 (501)
T PRK13390 77 TAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGA----DLPLRLSFGGEID-----------GFGSFEAALAGAG 141 (501)
T ss_pred eccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhh----ccceEEEecCccc-----------ccccHHHHhcccC
Confidence 999999999999999999999999998754332222111 1111222221100 1122333322110
Q ss_pred ccCCCCCCCCCCCeEEEEEccCCCCCCceEEe--ccHHHHHHHhh----hhhhhhhccccCCCCcEEEEcCChhhHHHHH
Q 006047 211 NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMV--SNENIVTFIAG----VKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284 (663)
Q Consensus 211 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~--sh~~l~~~~~~----~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 284 (663)
......++.++++|||||||.||+|.+ +|.++...... ....+ .+..+++++..+|++|.+++.
T Consensus 142 -----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~ 211 (501)
T PRK13390 142 -----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLR 211 (501)
T ss_pred -----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHH
Confidence 011122357999999999999999995 45554432211 11223 677899999999999999886
Q ss_pred HHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCC
Q 006047 285 IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK 363 (663)
Q Consensus 285 ~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (663)
.....+..|+++++.+. ++..+++.|+++++|+++++|+++..+.+......
T Consensus 212 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------- 264 (501)
T PRK13390 212 WCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR--------------------------- 264 (501)
T ss_pred HHHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc---------------------------
Confidence 65556778999988775 89999999999999999999999988764211000
Q ss_pred CCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCcc
Q 006047 364 HVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443 (663)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p 443 (663)
+....+++|.+++||+++++++.+.+++.++.++++.||+||+++++...........+++|+|
T Consensus 265 ----------------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~ 328 (501)
T PRK13390 265 ----------------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRS 328 (501)
T ss_pred ----------------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCc
Confidence 0001147899999999999999999998889999999999999876554333222334789999
Q ss_pred ccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc---CCceecCcEEEEcCCCcEEEeeeccce
Q 006047 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV---DGWFHTGDIGEWQPDGSLKIIDRKKNI 520 (663)
Q Consensus 444 ~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---~g~~~TGDlg~~~~~G~l~~~GR~~d~ 520 (663)
+++ +++++| +++. +++.|+.|||+++|++++.||+++++.+.+.+. ++|++|||+|++|++|++++.||.+|+
T Consensus 329 ~~g-~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~ 404 (501)
T PRK13390 329 VLG-DLHICD-DDGN--ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFM 404 (501)
T ss_pred ccc-eEEEEC-CCCC--CCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccc
Confidence 999 699998 6554 456789999999999999999999999888762 679999999999999999999999999
Q ss_pred eecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHH
Q 006047 521 FKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILG 597 (663)
Q Consensus 521 i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 597 (663)
|++ +|++|+|.+||++|.+||+|.+++|++.+++ +.+++++++..+. .. .+...+
T Consensus 405 i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~------------------~~---~~~~~~ 462 (501)
T PRK13390 405 IIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI------------------RG---SDELAR 462 (501)
T ss_pred eeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC------------------Cc---chhhHH
Confidence 996 8999999999999999999999999997754 5788888876531 00 011234
Q ss_pred HHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 598 ELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 598 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
+|.++++ ..|+.++.|..++++++. |+|++||++|++|+
T Consensus 463 ~l~~~~~-~~l~~~~~P~~~~~~~~i------P~t~~GKi~r~~L~ 501 (501)
T PRK13390 463 ELIDYTR-SRIAHYKAPRSVEFVDEL------PRTPTGKLVKGLLR 501 (501)
T ss_pred HHHHHHH-HhcccCCCCcEEEEeccC------CCCCccceehhhcC
Confidence 5556666 679999999999999765 89999999999874
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=564.99 Aligned_cols=481 Identities=17% Similarity=0.221 Sum_probs=394.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++.+|+++|+++. + +.+||+||.++++++|++|.+.|+++|++|+++++|++++++++||
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 368999999999999999999865 3 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|++|.++.+++.++++.+++++++++......+... ..+ .++ .+
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~---------------------~~ 580 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSL---------------------CY 580 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eee---------------------ec
Confidence 999999999999999999999999999999999988655433211 011 111 11
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
........ ..+.....+++++|++|||||||.||||+++|+++.+.+......+ ++.++|++++..|++|..+
T Consensus 581 ~~~~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 653 (1296)
T PRK10252 581 NAPLAPQG--AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS 653 (1296)
T ss_pred cccccccc--CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence 11111000 1111223578999999999999999999999999999998888777 7899999999999999888
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
+..++.++..|+++++.+. ++..+.+.++++++|++.++|+++..+++.......
T Consensus 654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~--------------------- 712 (1296)
T PRK10252 654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA--------------------- 712 (1296)
T ss_pred HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------
Confidence 8778889999999999763 789999999999999999999999887653211100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-----
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----- 433 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~----- 433 (663)
...++++|.+++||+++++++.+.+++.+++++++.||+||++..++......
T Consensus 713 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 770 (1296)
T PRK10252 713 ----------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA 770 (1296)
T ss_pred ----------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence 00114799999999999999999999888999999999999987655443221
Q ss_pred -ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-c------CCceecCcEEEE
Q 006047 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V------DGWFHTGDIGEW 505 (663)
Q Consensus 434 -~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~------~g~~~TGDlg~~ 505 (663)
.....++|.|+++++++|+| +.+. +++.|+.|||+++|+.+++||+++++.+.+.| . ++||+|||+|++
T Consensus 771 ~~~~~~~iG~p~~~~~~~i~d-~~~~--~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~ 847 (1296)
T PRK10252 771 VRGSSVPIGYPVWNTGLRILD-ARMR--PVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW 847 (1296)
T ss_pred cCCCCCCcccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence 12236799999999999998 5554 55677999999999999999999999999888 2 349999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEee-------CC--CCeEEEEEecChHHHHHHHHHc
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGN-------SF--ESFLVAIVNPNKDALERWAAEN 576 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~-------~~--~~~~~a~v~~~~~~~~~~~~~~ 576 (663)
++||.++++||.||+||+ +|++|+|.|||++|.+||+|.+++|+.. .. ...++++|++..+.
T Consensus 848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~-------- 918 (1296)
T PRK10252 848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGL-------- 918 (1296)
T ss_pred cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCC--------
Confidence 999999999999999997 8999999999999999999999987653 11 24799999876531
Q ss_pred CCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 577 GVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
. .. .++|+++++ ..|+.|++|..++.++.. |+|++||++|++|.+
T Consensus 919 ----------~--~~----~~~l~~~l~-~~Lp~~~~P~~~~~~~~l------P~t~~GKidr~~L~~ 963 (1296)
T PRK10252 919 ----------P--LD----TSALQAQLR-ERLPPHMVPVVLLQLDQL------PLSANGKLDRKALPL 963 (1296)
T ss_pred ----------C--CC----HHHHHHHHH-hhCchhcCCcEEEEecCC------CCCCCcChhHHhcCC
Confidence 0 00 123444444 689999999999998665 799999999999865
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-58 Score=507.16 Aligned_cols=479 Identities=20% Similarity=0.232 Sum_probs=381.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.+.|..++..+|+++|+... + +.+||+|+.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999753 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++..+++.++++.+++++.....+.... ..++.++...
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~---------------- 160 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPAT---------------- 160 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccch----------------
Confidence 99999999999999999999999999999999999887655433221 1222222110
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
..... ....+...++.++++|||||||.||+|.++|... +........+. ..++..+++++..+|++|.+
T Consensus 161 -~~~~~------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~-~~~~~~~~~~~--~~~~~~~d~~~~~~pl~h~~ 230 (516)
T PRK13383 161 -AGAEE------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLR-SAVGVWVTILD--RTRLRTGSRISVAMPMFHGL 230 (516)
T ss_pred -hhhhc------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhh-hhhhhHHhHHh--hhccCCCCeEEEecCCcchh
Confidence 00000 0011123456789999999999999999999743 21111111111 12678899999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 282 DRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
|+...+.++..|+++++... ++..+++.++++++|.+.++|+++..+........ .
T Consensus 231 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~---------------------- 287 (516)
T PRK13383 231 GLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR-A---------------------- 287 (516)
T ss_pred hHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc-c----------------------
Confidence 99877788999999987765 89999999999999999999999988764221100 0
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCcc
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~ 440 (663)
....+++|.+++||+++++++.+.+.+.++..+++.||+||++..+............++
T Consensus 288 --------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~ 347 (516)
T PRK13383 288 --------------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETV 347 (516)
T ss_pred --------------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcc
Confidence 001157999999999999999999999999999999999999876554443333345789
Q ss_pred CccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccce
Q 006047 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNI 520 (663)
Q Consensus 441 G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~ 520 (663)
|.|+++++++|+| +++. +++.|+.|||+++|+.++.||++++. ..+.+|||+|||+|++|++|++++.||.+|+
T Consensus 348 G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~ 421 (516)
T PRK13383 348 GKPVAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDM 421 (516)
T ss_pred cCCCCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEeccccce
Confidence 9999999999998 6554 55678999999999999999997653 3346899999999999999999999999999
Q ss_pred eecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHH
Q 006047 521 FKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILG 597 (663)
Q Consensus 521 i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 597 (663)
|++ +|++|+|.+||++|.++|+|.++++++.++. +.+.++|++.++. .. . .+
T Consensus 422 i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~------------------~~--~----~~ 476 (516)
T PRK13383 422 IIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGS------------------GV--D----AA 476 (516)
T ss_pred EEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC------------------CC--C----HH
Confidence 996 8999999999999999999999999996643 5788888876532 00 0 12
Q ss_pred HHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 598 ELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 598 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
.|++++. +.++.++.|..+.+++.. |+|.+||++|++|.
T Consensus 477 ~l~~~~~-~~l~~~~~p~~i~~v~~i------P~t~~gKi~r~~L~ 515 (516)
T PRK13383 477 QLRDYLK-DRVSRFEQPRDINIVSSI------PRNPTGKVLRKELP 515 (516)
T ss_pred HHHHHHH-HhcccCCCCcEEEEeCCC------CCCCCCcCcHHHhC
Confidence 3455555 578899999999998655 79999999999873
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=501.99 Aligned_cols=484 Identities=20% Similarity=0.226 Sum_probs=394.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
++++.++|.++++.+|+++|+... + +.+||.||.+++.++|.+|.+.|+.+|++|+++++|+.++++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a 71 (503)
T PRK04813 1 IMDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG 71 (503)
T ss_pred CchHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467999999999999999998754 2 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++..+++.++++++++++..... . ..+ . ..++
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~-~---------------------~~~~ 121 (503)
T PRK04813 72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE----I----LGI-P---------------------VITL 121 (503)
T ss_pred HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc----c----cCC-c---------------------EEeh
Confidence 99999999999999999999999999999999998764100 0 000 1 1122
Q ss_pred HHHHhcc--cccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 203 DEFLQLG--ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 203 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
+++.... ...........++++++++|||||||.||+|.++|+++..........+ .+..+++++...|++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD 196 (503)
T ss_pred HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence 2222111 0111112345678899999999999999999999999999888776665 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
.++..++.++..|+++++.+. ++..+++.++++++|.+.++|+.+..+......
T Consensus 197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~---------------------- 254 (503)
T PRK04813 197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF---------------------- 254 (503)
T ss_pred HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc----------------------
Confidence 888778888999999998775 789999999999999999999998876432110
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCC---
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN--- 432 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~--- 432 (663)
.....+++|.++++|+++++.+.+.+.+.+ +..+++.||+||++.........
T Consensus 255 -----------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~ 311 (503)
T PRK04813 255 -----------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM 311 (503)
T ss_pred -----------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence 001115799999999999999999999888 78999999999997654432211
Q ss_pred -CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc--C--CceecCcEEEEcC
Q 006047 433 -EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--D--GWFHTGDIGEWQP 507 (663)
Q Consensus 433 -~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--~--g~~~TGDlg~~~~ 507 (663)
......++|.|.++++++|++ +++. +++.|+.|||+++|+.++.||+++++.+...|. + +||+|||+|++ .
T Consensus 312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~ 387 (503)
T PRK04813 312 LDQYKRLPIGYAKPDSPLLIID-EEGT--KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E 387 (503)
T ss_pred cccCCCCcccccCCCCEEEEEC-CCCC--CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e
Confidence 112235799999999999998 6554 445679999999999999999999998888762 3 49999999999 8
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
+|++++.||.+|+|++ +|++++|.+||+.+.++|+|++++|++.+++ +.+++++++.++..
T Consensus 388 ~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------------- 451 (503)
T PRK04813 388 DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDF--------------- 451 (503)
T ss_pred CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccc---------------
Confidence 9999999999999996 8999999999999999999999999986543 57889888776321
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
+....+.+.+++++. ..+++++.|+.+++++.. |+|++||++|++|++++.
T Consensus 452 -----~~~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 452 -----EREFELTKAIKKELK-ERLMEYMIPRKFIYRDSL------PLTPNGKIDRKALIEEVN 502 (503)
T ss_pred -----cccchhHHHHHHHHH-hhCccccCCeEEEEeccC------CCCCCCCCcHHHHHHHhc
Confidence 001223345555555 679999999999998665 799999999999998875
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=497.93 Aligned_cols=425 Identities=18% Similarity=0.176 Sum_probs=346.9
Q ss_pred eeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEc
Q 006047 79 KTYKEVYDLVIKVVNAIRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE 157 (663)
Q Consensus 79 ~Ty~el~~~v~~~A~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~ 157 (663)
+.|+||.+++.++|++|.+.|+ ++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 7899999999999999999988 579999999999999999999999999999999999999999999999999999987
Q ss_pred CCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCC
Q 006047 158 EKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237 (663)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p 237 (663)
++..... .... ........+++.++++|||||||.|
T Consensus 100 ~~~~~~~----------------~~~~----------------------------~~~~~~~~~~~~~~i~~TSGTTG~P 135 (452)
T PRK07445 100 DQLKLSH----------------PPPL----------------------------PSQGILPNLETGWIMIPTGGSSGQI 135 (452)
T ss_pred Ccccccc----------------CCCC----------------------------CccccCCCCCCcEEEEeCCCCCCCC
Confidence 6532110 0000 0001123568999999999999999
Q ss_pred ceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCc
Q 006047 238 KGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPT 316 (663)
Q Consensus 238 K~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t 316 (663)
|+|.+||++++..+......+ .+.+ ++.++.+|++|.+|+..++.+++.|+++++.+. +.........++++|
T Consensus 136 KgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t 209 (452)
T PRK07445 136 RFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDF 209 (452)
T ss_pred cEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCce
Confidence 999999999998887766655 4444 467889999999999878888999999998764 222223344578899
Q ss_pred EEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCC
Q 006047 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396 (663)
Q Consensus 317 ~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~ 396 (663)
+++++|+++..+.+... ..++++|.+++||++
T Consensus 210 ~~~~vP~~l~~l~~~~~------------------------------------------------~~l~~l~~i~~gG~~ 241 (452)
T PRK07445 210 FLSLVPTQLQRLLQLRP------------------------------------------------QWLAQFRTILLGGAP 241 (452)
T ss_pred EEEehHHHHHHHHhhCh------------------------------------------------hhhhcceEEEECCcc
Confidence 99999999998764100 001479999999999
Q ss_pred CcHHHHHHHHHhcCCceeecccccccccceeccCCCC-ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC
Q 006047 397 LTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS 475 (663)
Q Consensus 397 l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~ 475 (663)
+++++.+.+++ ++.++++.||+||++..+....+.. .....++|+|+|+++++|+ .|+.|||+|+|+
T Consensus 242 l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~-----------~g~~Gel~v~g~ 309 (452)
T PRK07445 242 AWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP-----------ANQTGNITIQAQ 309 (452)
T ss_pred CCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc-----------CCCcceEEEeCC
Confidence 99999988876 5899999999999976544333322 2234689999999999997 236899999999
Q ss_pred cccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC
Q 006047 476 TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE 555 (663)
Q Consensus 476 ~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~ 555 (663)
.++.||++++.. .+|||+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++
T Consensus 310 ~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~ 383 (452)
T PRK07445 310 SLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDP 383 (452)
T ss_pred ccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCc
Confidence 999999975321 3789999999999999999999999999996 8999999999999999999999999998764
Q ss_pred ---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccC
Q 006047 556 ---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLT 632 (663)
Q Consensus 556 ---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t 632 (663)
+.++|++++.++. .+ .++++++++ ..|++|++|+.+++++.. |+|
T Consensus 384 ~~g~~~~a~vv~~~~~------------------~~-------~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~t 431 (452)
T PRK07445 384 HWGEVVTAIYVPKDPS------------------IS-------LEELKTAIK-DQLSPFKQPKHWIPVPQL------PRN 431 (452)
T ss_pred CCCcEEEEEEEeCCCC------------------CC-------HHHHHHHHH-HhCCcccCCeEEEEecCC------CCC
Confidence 5789999876531 00 134455555 679999999999999765 899
Q ss_pred cccccchHHHHHHHHHHHH
Q 006047 633 PTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 633 ~~GKv~R~~l~~~~~~~~~ 651 (663)
++||++|++|++++.++++
T Consensus 432 ~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 432 PQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred CCcccCHHHHHHHHHHhhC
Confidence 9999999999999988764
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=507.51 Aligned_cols=515 Identities=21% Similarity=0.285 Sum_probs=397.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
+.++.++|.++++.+|+++|++.. + +.+||.||.++++++|.+|.+ .|+++|++|+++++|++++++++|
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 467999999999999999999754 2 469999999999999999985 899999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCCh-hh-HHH-H------
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP-EQ-REE-I------ 192 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~-~~~-~------ 192 (663)
||+++|++++|++|.++.+++.++++.++++.++++++....+.+.... .....++....... .. ... .
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999987654433332211 11222222110000 00 000 0
Q ss_pred hh------cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCC
Q 006047 193 EK------YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (663)
Q Consensus 193 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (663)
.. ......++.+................++++++++|||||||.||+|.++|.++..++......+.. ....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~ 248 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP 248 (560)
T ss_pred cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence 00 000011222222222211122233567899999999999999999999999998876654433311 0133
Q ss_pred CCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhH
Q 006047 267 SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (663)
Q Consensus 267 ~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (663)
.++.++..+|++|.+++.. .+.++..|+++++... ++..++..++++++|.++++|+++..+......
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--------- 319 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF--------- 319 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence 4677889999999998765 5667888988776643 788999999999999999999999987642100
Q ss_pred HHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccc
Q 006047 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423 (663)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~ 423 (663)
. ....+++|.+++||+++++.+.+.+++.+|+.+++.||+||++
T Consensus 320 ----------------------------~--------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~ 363 (560)
T PRK08974 320 ----------------------------Q--------ELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS 363 (560)
T ss_pred ----------------------------c--------cCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence 0 0111579999999999999999999998899999999999998
Q ss_pred cceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEE
Q 006047 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503 (663)
Q Consensus 424 ~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg 503 (663)
..+..+.........++|.|+|++++++++ +++. +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|
T Consensus 364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 440 (560)
T PRK08974 364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGN--EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA 440 (560)
T ss_pred ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCC--CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence 776665543333457899999999999998 6654 5567799999999999999999999999888889999999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNG 580 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 580 (663)
+++++|+++++||.+|+|++ +|.+++|.+||+.|.++|+|.+++|++.+++ +.++++++.....
T Consensus 441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~------------ 507 (560)
T PRK08974 441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS------------ 507 (560)
T ss_pred EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC------------
Confidence 99999999999999999997 7999999999999999999999999987654 4566666544311
Q ss_pred ChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 581 DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
.. .+++.+++. ..|+.++.|..+.++++. |+|++||++|+.|+++..+.++
T Consensus 508 ------~~-------~~~l~~~l~-~~l~~~~~P~~~~~~~~l------P~t~~GK~~r~~l~~~~~~~~~ 558 (560)
T PRK08974 508 ------LT-------EEELITHCR-RHLTGYKVPKLVEFRDEL------PKSNVGKILRRELRDEARAKVD 558 (560)
T ss_pred ------CC-------HHHHHHHHH-hhcccccCCcEEEEhhhC------CCCCCCcEeHHHHHHHHHhhhc
Confidence 00 123444444 678899999999998665 7999999999999998877654
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=610.50 Aligned_cols=485 Identities=19% Similarity=0.230 Sum_probs=400.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|.++++.+|+++|+++. + +.+||+||+++++++|.+|.+.|+++|++|+|+++|++++++++
T Consensus 2000 ~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~ 2070 (5163)
T PRK12316 2000 PRGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVAL 2070 (5163)
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44568999999999999999999865 3 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|+++||++|.++.+++.++++.++++++++++.....+... .... .+.+...
T Consensus 2071 lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~---------------- 2128 (5163)
T PRK12316 2071 LAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD---------------- 2128 (5163)
T ss_pred HHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch----------------
Confidence 99999999999999999999999999999999999988654432110 1111 1111110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
... .... ...+.....+++++|++|||||||.||||+++|+++.+.+......+ +++++|+++.+.|++|.
T Consensus 2129 --~~~-~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 2199 (5163)
T PRK12316 2129 --AEW-ADYP-DTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFD 2199 (5163)
T ss_pred --hhh-hccC-ccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHH
Confidence 000 0000 11222345789999999999999999999999999999999888777 78999999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
.++..++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.......
T Consensus 2200 ~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------- 2257 (5163)
T PRK12316 2200 GAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD---------------------- 2257 (5163)
T ss_pred HHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc----------------------
Confidence 888788999999999977653 7899999999999999999999999886532110
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCcc-
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMS- 435 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~- 435 (663)
....++|.+++||+++++++.+.|.+.+ +..+++.||+||++..++........
T Consensus 2258 ------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 2313 (5163)
T PRK12316 2258 ------------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDP 2313 (5163)
T ss_pred ------------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccc
Confidence 0013799999999999999999998765 67899999999998765543322111
Q ss_pred ---ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc--------CCceecCcEEE
Q 006047 436 ---MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--------DGWFHTGDIGE 504 (663)
Q Consensus 436 ---~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg~ 504 (663)
...++|+|+++++++|+| +++. +++.|+.|||+|+|+.+++||+++|+.|++.|. ++||+|||+|+
T Consensus 2314 ~~~~~~~iG~p~~~~~~~i~d-~~~~--~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~ 2390 (5163)
T PRK12316 2314 CGAAYVPIGRALGNRRAYILD-ADLN--LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLAR 2390 (5163)
T ss_pred cCCCcCCcccccCCCEEEEEC-CCCC--CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEE
Confidence 125799999999999998 6654 556789999999999999999999999999882 35999999999
Q ss_pred EcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 505 WQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 505 ~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
+++||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++..+.
T Consensus 2391 ~~~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~-------------- 2455 (5163)
T PRK12316 2391 YRADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAA-------------- 2455 (5163)
T ss_pred EcCCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCC--------------
Confidence 9999999999999999998 799999999999999999999999998653 36899999987632
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 583 KSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
. ...+.|+++++ ..||.|++|..+++++.. |+|++||++|++|.+..
T Consensus 2456 ------~----~~~~~l~~~l~-~~Lp~~~vP~~~~~l~~l------P~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316 2456 ------E----DLLAELRAWLA-ARLPAYMVPAHWVVLERL------PLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred ------c----cCHHHHHHHHH-hhCchhcCcceEeeeccc------CCCCCCccCHhhcCCCc
Confidence 0 11234555555 789999999999998765 89999999999997653
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=510.04 Aligned_cols=503 Identities=19% Similarity=0.264 Sum_probs=384.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc
Q 006047 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC 113 (663)
Q Consensus 34 ~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~ 113 (663)
+++|...+++.++.++|..+++.+|+..++ +..+..++.+||.||++++.++|.+|.++|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~ 84 (579)
T PRK09192 11 SSLPRRYADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD 84 (579)
T ss_pred ccccccccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 467888899999999999999998866543 22333457899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCeEeeccCCCC-------hHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCCh
Q 006047 114 PEWIIGMEACNALGLHCVPLYDTLG-------AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP 186 (663)
Q Consensus 114 ~~~~~~~lA~~~~G~v~v~l~~~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 186 (663)
+++++++|||+++|++++|+++..+ .+++..+++.++++++++++...+.+.+..... ..++
T Consensus 85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~----~~~~------- 153 (579)
T PRK09192 85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN----PLLH------- 153 (579)
T ss_pred hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc----cccc-------
Confidence 9999999999999999999976443 588999999999999999987665544432111 1111
Q ss_pred hhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhh-hhhhccccC
Q 006047 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC-LLESVNEKL 265 (663)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~-~~~~~~~~~ 265 (663)
..++.++...... ....+...++++++++|||||||.||+|.++|++++..+..... .+ ++
T Consensus 154 ------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~ 215 (579)
T PRK09192 154 ------------VLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KV 215 (579)
T ss_pred ------------eeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cC
Confidence 1122333222111 12223456789999999999999999999999999998877665 45 78
Q ss_pred CCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcC
Q 006047 266 TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (663)
Q Consensus 266 ~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (663)
.++|++++++|++|.+++.. ++.++..|+++++.+. ++..+++.+.+++++.++..|..+..+.......
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~---- 291 (579)
T PRK09192 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK---- 291 (579)
T ss_pred CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----
Confidence 89999999999999999876 5567889999877652 6889999999999998776555444433211000
Q ss_pred ChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC------Cce
Q 006047 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHV 413 (663)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v 413 (663)
... ...++++|.+++||+++++.+.+.+.+.+. ..+
T Consensus 292 ------------------------------~~~--------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~ 333 (579)
T PRK09192 292 ------------------------------DLA--------ELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAF 333 (579)
T ss_pred ------------------------------ccc--------ccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhc
Confidence 000 011157999999999999999998888763 358
Q ss_pred eecccccccccceeccCCCCc---------------------------cccCccCccccCeEEEEeecCCCccccCCCCC
Q 006047 414 LQGYGLTETCAGTFVSLPNEM---------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTP 466 (663)
Q Consensus 414 ~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~ 466 (663)
++.||+||++..+........ ....++|.|+|+++++|+| +++. +++.|+
T Consensus 334 ~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~--~~~~g~ 410 (579)
T PRK09192 334 MPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGM--PLPERV 410 (579)
T ss_pred ccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCC--CCCCCC
Confidence 999999999866554332110 0124789999999999998 6654 445679
Q ss_pred CCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcc
Q 006047 467 RGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAID 545 (663)
Q Consensus 467 ~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~ 545 (663)
.|||+++|+.+++||+++ ..+.+.+ .+|||+|||+|++ ++|+++++||.+|+|++ +|++|+|.|||+.|.+||+|.
T Consensus 411 ~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~ 487 (579)
T PRK09192 411 VGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELR 487 (579)
T ss_pred EEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCcc
Confidence 999999999999999998 4555555 7899999999999 89999999999999997 899999999999999999998
Q ss_pred --eEEEEeeCCC--CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEcc
Q 006047 546 --SVWVYGNSFE--SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEP 621 (663)
Q Consensus 546 --~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~ 621 (663)
+|+|++.+++ +.++++++..... ....+.+.+.+++.+. +.++.|..+.++.
T Consensus 488 ~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~~l~~~~~~~l~----~~~~~~~~i~~~~ 543 (579)
T PRK09192 488 SGDAAAFSIAQENGEKIVLLVQCRISD--------------------EERRGQLIHALAALVR----SEFGVEAAVELVP 543 (579)
T ss_pred CCcEEEEEeccCCCeeEEEEEEecCCC--------------------hHHHHHHHHHHHHHHH----HHhCCCceEEEeC
Confidence 8999887654 4677777655421 1122344444443332 2466777777773
Q ss_pred -CCCCCCCCccCcccccchHHHHHHHHH
Q 006047 622 -VPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 622 -~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+. +|+|.+||++|++|+++|.+
T Consensus 544 ~~~-----lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 544 PHS-----LPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred CCC-----cCCCCCcchhHHHHHHHHHc
Confidence 23 38999999999999999876
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-57 Score=501.76 Aligned_cols=510 Identities=21% Similarity=0.240 Sum_probs=386.0
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.+.|...++.+|+++|+... + ..+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 57889999999999999999764 2 56999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++..+++.++++.++++.+....+.+..... +.. ..+.+....... .....++..++.
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 163 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGP-KPLVIDVDDPEY---PGGRFIGALDYE 163 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCC-ceEEEecCcccc---ccCCCcccccHH
Confidence 999999999999999999999999999999999988766554433211 111 122222111100 000112334566
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 283 (663)
.++.............+.+++++++|||||||.||+|.++|+++..........+ .+..++++++.+|++|..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~ 238 (545)
T PRK08162 164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW 238 (545)
T ss_pred HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence 6654322111111123456789999999999999999999998876665544433 57788999999999999998
Q ss_pred HHHHHH-HHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCC
Q 006047 284 AIEEVF-ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (663)
Q Consensus 284 ~~~~~~-l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (663)
...+.. +..|.++++...++..+++.++++++|++.++|+.+..+++......
T Consensus 239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------- 292 (545)
T PRK08162 239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR-------------------------- 292 (545)
T ss_pred HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc--------------------------
Confidence 764444 44444444444499999999999999999999999998865211100
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC---------
Q 006047 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--------- 433 (663)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--------- 433 (663)
....+.+.++++|+.+++.+.+.+++ ++.++++.||+||+++.+..+....
T Consensus 293 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 352 (545)
T PRK08162 293 -------------------AGIDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDE 352 (545)
T ss_pred -------------------cCCccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccc
Confidence 00023456678999999999988876 5899999999999865444332110
Q ss_pred -ccccCccCcccc-CeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcE
Q 006047 434 -MSMIGTVGPPVP-NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSL 511 (663)
Q Consensus 434 -~~~~~~~G~p~~-~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l 511 (663)
.....+.|.+.+ +..++++|.+++...+.+.++.|||+++|+.++.||+++++.+...|.+|||+|||+|++|++|++
T Consensus 353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l 432 (545)
T PRK08162 353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYI 432 (545)
T ss_pred hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccE
Confidence 011245677665 346778873344433332234799999999999999999999999999999999999999999999
Q ss_pred EEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcC
Q 006047 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCEN 588 (663)
Q Consensus 512 ~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (663)
+++||.+|+|++ +|++|+|.+||+.|..+|+|.+|+|++.++. +.++++|++.++. .
T Consensus 433 ~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~------------------~- 492 (545)
T PRK08162 433 KIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGA------------------S- 492 (545)
T ss_pred EEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCC------------------C-
Confidence 999999999996 8999999999999999999999999986543 5788898877532 0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 589 PKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 589 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
. ..++|+++++ ..|+.+++|..+.+.+ +|+|++||++|+.|++++.++..
T Consensus 493 -~----~~~~l~~~~~-~~l~~~~~P~~~~~~~-------iP~t~~gK~~r~~l~~~~~~l~~ 542 (545)
T PRK08162 493 -A----TEEEIIAHCR-EHLAGFKVPKAVVFGE-------LPKTSTGKIQKFVLREQAKSLKA 542 (545)
T ss_pred -C----CHHHHHHHHH-HhcccccCCcEEEecc-------cCCCCCcCCcHHHHHHHHhhhhh
Confidence 0 1234555555 6789999999987543 27999999999999998776543
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=496.71 Aligned_cols=453 Identities=22% Similarity=0.264 Sum_probs=369.6
Q ss_pred HHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeec
Q 006047 54 VERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL 133 (663)
Q Consensus 54 a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l 133 (663)
++..++++|++.. + +++||+||.++++++|..|. ++|+|+++++|++++++++|||+++|++++|+
T Consensus 10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l 75 (471)
T PRK07787 10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV 75 (471)
T ss_pred hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 3456788888754 2 67999999999999999986 47999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccC
Q 006047 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ 213 (663)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (663)
++..+.+++..+++.++++.++++.+... ..+..+..... ..+ .
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~-----------~ 119 (471)
T PRK07787 76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARS-----------W 119 (471)
T ss_pred CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------ccc-----------c
Confidence 99999999999999999999999864110 01111100000 000 0
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHc
Q 006047 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISN 292 (663)
Q Consensus 214 ~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~ 292 (663)
.......++++++++|||||||.||+|.++|.++...+..+...+ .+..++++++.+|++|..|+.. ++.++..
T Consensus 120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 194 (471)
T PRK07787 120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI 194 (471)
T ss_pred ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence 111224678999999999999999999999999999888777666 6788999999999999999876 6778999
Q ss_pred CcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhh
Q 006047 293 GAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIA 371 (663)
Q Consensus 293 G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (663)
|+++++.+. ++..+++.++ +++|+++++|+.+..+++....
T Consensus 195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------- 236 (471)
T PRK07787 195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA------------------------------------- 236 (471)
T ss_pred CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-------------------------------------
Confidence 999988765 8999999999 9999999999999887641100
Q ss_pred HHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEE
Q 006047 372 DKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451 (663)
Q Consensus 372 ~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i 451 (663)
...++++|.+++||+++++++.+++.+.++..+++.||+||++........ ......++|+|+++++++|
T Consensus 237 ---------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i 306 (471)
T PRK07787 237 ---------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRL 306 (471)
T ss_pred ---------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEE
Confidence 001147999999999999999999999889999999999999865444332 2223478999999999999
Q ss_pred eecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeec-cceeecCCCcee
Q 006047 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRK-KNIFKLSQGEYV 529 (663)
Q Consensus 452 v~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~-~d~i~i~~G~~v 529 (663)
+| +++..++.+.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||. +|+++. +|++|
T Consensus 307 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v 384 (471)
T PRK07787 307 VD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRI 384 (471)
T ss_pred EC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEE
Confidence 99 66655543223489999999999999999999998888 5899999999999999999999996 789995 89999
Q ss_pred ccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHc
Q 006047 530 AVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEK 606 (663)
Q Consensus 530 ~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 606 (663)
+|.+||++|.+++.|++++|++.+++ +.++++|++..+. . .+++.++++ +
T Consensus 385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~--------~~~l~~~l~-~ 437 (471)
T PRK07787 385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV------------------A--------ADELIDFVA-Q 437 (471)
T ss_pred CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC------------------C--------HHHHHHHHH-h
Confidence 99999999999999999999997654 5889998874311 1 123444454 6
Q ss_pred CCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 607 KLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 607 ~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
.|++++.|..+++++.. |+|.+||++|++|++
T Consensus 438 ~l~~~~~P~~i~~~~~i------P~~~~GKi~r~~L~~ 469 (471)
T PRK07787 438 QLSVHKRPREVRFVDAL------PRNAMGKVLKKQLLS 469 (471)
T ss_pred hcccccCCcEEEEeccC------CCCCCccccHHHhcc
Confidence 78899999999998655 799999999999975
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=497.11 Aligned_cols=495 Identities=19% Similarity=0.197 Sum_probs=390.1
Q ss_pred HHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeE
Q 006047 51 RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHC 130 (663)
Q Consensus 51 ~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 130 (663)
...++++|+++|+++. +.. +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4677889999999864 222 569999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhccc
Q 006047 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE 210 (663)
Q Consensus 131 v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (663)
+++++.++.+++.++++.++++.++++......+....... ......+....... ......+.+.....+
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 146 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP 146 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcC-CCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence 99999999999999999999999999987765544433222 33334444432111 011223343332211
Q ss_pred ccCCCCCCCCCCCeEEEEEccCCCCCCceEEe--ccHHHHHHH---hhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH
Q 006047 211 NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMV--SNENIVTFI---AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI 285 (663)
Q Consensus 211 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~--sh~~l~~~~---~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 285 (663)
.......++.++++|||||||.||+|.+ +|.++.... ..+...+ .+..++++++.+|++|.+++..
T Consensus 147 ----~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~ 217 (511)
T PRK13391 147 ----ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA 217 (511)
T ss_pred ----CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence 1112234567899999999999999995 465554332 2223333 5678999999999999999887
Q ss_pred HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCC
Q 006047 286 EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364 (663)
Q Consensus 286 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (663)
.+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......
T Consensus 218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------- 269 (511)
T PRK13391 218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---------------------------- 269 (511)
T ss_pred HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence 7888999999998876 99999999999999999999999988764211100
Q ss_pred CCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccc
Q 006047 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444 (663)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~ 444 (663)
+...++++|.+++||+++++++.+.+++.+|..+++.||+||++.++...........+++|.|+
T Consensus 270 ---------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~ 334 (511)
T PRK13391 270 ---------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM 334 (511)
T ss_pred ---------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence 00112589999999999999999999998899999999999998776554333333457899999
Q ss_pred cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-c-CCceecCcEEEEcCCCcEEEeeeccceee
Q 006047 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-DGWFHTGDIGEWQPDGSLKIIDRKKNIFK 522 (663)
Q Consensus 445 ~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~-~g~~~TGDlg~~~~~G~l~~~GR~~d~i~ 522 (663)
++ .+++++ +++. +++.|+.|||+++|+ ++.||+++++.+.+.+ . ++||+|||+|+++++|.+++.||.+|+++
T Consensus 335 ~g-~~~i~d-~~~~--~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~ 409 (511)
T PRK13391 335 FG-DLHILD-DDGA--ELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII 409 (511)
T ss_pred cc-eEEEEC-CCCC--CCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence 99 688888 5554 445679999999999 8889999999888877 3 48999999999999999999999999999
Q ss_pred cCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHH
Q 006047 523 LSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEL 599 (663)
Q Consensus 523 i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 599 (663)
+ +|.+++|.+||+++.+||.|.+|+|++.++. +.+++++++..+.. .. +.+.++|
T Consensus 410 ~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~-----------------~~----~~~~~~l 467 (511)
T PRK13391 410 S-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVD-----------------PG----PALAAEL 467 (511)
T ss_pred e-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCC-----------------cc----cchHHHH
Confidence 6 8999999999999999999999999987644 46888888765320 01 1233556
Q ss_pred HHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 600 SRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 600 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+++++ ..|+.++.|..|.+++.. |+|++||++|+.|++.|..
T Consensus 468 ~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 468 IAFCR-QRLSRQKCPRSIDFEDEL------PRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred HHHHH-hhcccCcCCcEEEEeecC------CCCCccceeHHHHHHHhhc
Confidence 66666 789999999999998665 7999999999999998854
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-58 Score=608.56 Aligned_cols=501 Identities=19% Similarity=0.261 Sum_probs=412.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|.++++++|+++|+++. + +.+||+||.++++++|++|.+.|+++|++|+|+++|++++++++
T Consensus 4548 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 4618 (5163)
T PRK12316 4548 PATRCVHQLVAERARMTPDAVAVVFD---E------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGL 4618 (5163)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45678999999999999999999865 3 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|++|.++.+++.++++.++++++|++......+... ... ..+.++..
T Consensus 4619 lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~---------------- 4676 (5163)
T PRK12316 4619 LAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP-----DGL-ASLALDRD---------------- 4676 (5163)
T ss_pred HHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccc-----cCc-ceEeecch----------------
Confidence 99999999999999999999999999999999999987654432110 111 11211110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.+. . ......+.....+++++|++|||||||.||||+++|+++.+.+......+ +++++|+++++.|++|.
T Consensus 4677 --~~~-~-~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 4747 (5163)
T PRK12316 4677 --EDW-E-GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERY-----ELTPDDRVLQFMSFSFD 4747 (5163)
T ss_pred --hhc-c-cCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhc-----CCCcCCeEEEecCcchh
Confidence 000 0 00111222345689999999999999999999999999999998887777 78999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
.+...++.++..|+++++++. ++..+++.|+++++|+++++|+++..+........
T Consensus 4748 ~~~~~~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--------------------- 4806 (5163)
T PRK12316 4748 GSHEGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG--------------------- 4806 (5163)
T ss_pred hHHHHHHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcccc---------------------
Confidence 888888899999999999875 78999999999999999999999998865321100
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC---
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE--- 433 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~--- 433 (663)
..+++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++......
T Consensus 4807 -------------------------~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 4861 (5163)
T PRK12316 4807 -------------------------EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDA 4861 (5163)
T ss_pred -------------------------CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccc
Confidence 115899999999999999987776555 789999999999988665443221
Q ss_pred -ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc--------CCceecCcEEE
Q 006047 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--------DGWFHTGDIGE 504 (663)
Q Consensus 434 -~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg~ 504 (663)
.....++|+|+++++++|+| +++. +++.|+.|||+|+|+.+++||+++++.|++.|. ++||+|||+|+
T Consensus 4862 ~~~~~~~iG~p~~~~~~~i~d-~~~~--~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4938 (5163)
T PRK12316 4862 CGAAYMPIGTPLGNRSGYVLD-GQLN--PLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLAR 4938 (5163)
T ss_pred cCCCCCcccccccCCEEEEEC-CCCC--cCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeE
Confidence 12246899999999999998 5554 566779999999999999999999999999882 25999999999
Q ss_pred EcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 505 WQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 505 ~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
++++|.++++||.||+||+ +|++|+|.|||+.|.+||+|.+|+|++.++ ++.++|+|++.....
T Consensus 4939 ~~~dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~------------- 5004 (5163)
T PRK12316 4939 YRADGVIDYLGRVDHQVKI-RGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPAL------------- 5004 (5163)
T ss_pred ECCCCcEEEeccccceEee-ccEeecHHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEeCCcccc-------------
Confidence 9999999999999999997 899999999999999999999999998654 358999999876421
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHh
Q 006047 583 KSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVF 654 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~ 654 (663)
...++....+.+.|++++. ..||.|++|..+++++.. |+|++||++|++|.+.+.+..+..|
T Consensus 5005 ---~~~~~~~~~~~~~l~~~l~-~~lp~y~vP~~~~~~~~l------P~t~~GKvdR~~L~~~~~~~~~~~~ 5066 (5163)
T PRK12316 5005 ---ADADEAQAELRDELKAALR-ERLPEYMVPAHLVFLARM------PLTPNGKLDRKALPQPDASLLQQAY 5066 (5163)
T ss_pred ---ccccccchhhHHHHHHHHh-ccCchhhCCcceeecccC------CCCCCcccChhhcCCcccccccccc
Confidence 0112233456667777777 799999999999988665 8999999999999888766555444
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-58 Score=598.60 Aligned_cols=490 Identities=19% Similarity=0.257 Sum_probs=402.0
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.++|.++++++||++|+++. + +++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|
T Consensus 510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578999999999999999999865 3 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|++|.++.+++.++++.+++++++++.+....+.. . ... .++.++..
T Consensus 581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-~----~~~-~~~~~~~~----------------- 637 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-P----AGL-RSLCLDEP----------------- 637 (3956)
T ss_pred HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-c----cCc-cEEEeccc-----------------
Confidence 999999999999999999999999999999999999754322110 0 111 12222211
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
.+..... ....+.....+++++|++|||||||.||||+++|+++.+.+......+ ++.+++++++..|++|..
T Consensus 638 -~~~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 710 (3956)
T PRK12467 638 -ADLLCGY-SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-----QLAADDSMLMVSTFAFDL 710 (3956)
T ss_pred -ccccccc-CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-----CCCCCCEEEEecCccHhH
Confidence 0001101 111222345689999999999999999999999999999999887777 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 282 DRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
+...++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+++.....
T Consensus 711 ~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------------------- 768 (3956)
T PRK12467 711 GVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA---------------------- 768 (3956)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc----------------------
Confidence 98889999999999999874 7899999999999999999999999886522110
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCcc-
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMS- 435 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~- 435 (663)
...++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++........
T Consensus 769 -------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 823 (3956)
T PRK12467 769 -------------------------LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEER 823 (3956)
T ss_pred -------------------------cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccc
Confidence 013679999999999999999998866 78999999999998766554332211
Q ss_pred --ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc--------CCceecCcEEEE
Q 006047 436 --MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--------DGWFHTGDIGEW 505 (663)
Q Consensus 436 --~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg~~ 505 (663)
...++|+|+++++++|+| +++. +++.|+.|||+|+|+.+++||+++|+.|++.|. ++||+|||+|++
T Consensus 824 ~~~~~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~ 900 (3956)
T PRK12467 824 DFGNVPIGQPLANLGLYILD-HYLN--PVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARY 900 (3956)
T ss_pred cCCCCcccCCcCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEE
Confidence 125799999999999998 5554 566789999999999999999999999998882 239999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCChh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGDFK 583 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 583 (663)
++||.++++||.||+||+ +|++|+|.|||+.|.+||+|++|+|++.++ .+.++|++++....
T Consensus 901 ~~dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~--------------- 964 (3956)
T PRK12467 901 RADGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVA--------------- 964 (3956)
T ss_pred cCCCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecccc---------------
Confidence 999999999999999998 799999999999999999999999998543 35899999866421
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
.........++|+++++ ..||.|++|..+++++.. |+|++||++|++|.+.+.
T Consensus 965 ----~~~~~~~~~~~l~~~l~-~~Lp~y~vP~~~~~l~~l------P~t~~GKidR~~L~~~~~ 1017 (3956)
T PRK12467 965 ----DGAEHQATRDELKAQLR-QVLPDYMVPAHLLLLDSL------PLTPNGKLDRKALPKPDA 1017 (3956)
T ss_pred ----cccccccCHHHHHHHHH-hhCchhcCCceEeeeccc------CCCCCCCcCHhhcCCccc
Confidence 00001122345555665 789999999999998665 899999999999987653
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-57 Score=492.87 Aligned_cols=449 Identities=24% Similarity=0.305 Sum_probs=371.8
Q ss_pred CCHHHHH-HHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESCWDVF-RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l~~~l-~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+++.+.+ ..+++.+|+++|++.. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la 72 (458)
T PRK09029 2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72 (458)
T ss_pred chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 4555555 4558999999999753 2 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++..+.+++..+++.+++++++++++... +.. +.... +
T Consensus 73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~~----------------------~ 121 (458)
T PRK09029 73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSLH----------------------L 121 (458)
T ss_pred HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------ccccc----------------------c
Confidence 9999999999999999999999999999999998876422 100 00000 0
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
. . ..........++++++++|||||||.||+|.+||++++..+......+ +..++++++..+|++|.+|
T Consensus 122 ~-----~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g 190 (458)
T PRK09029 122 Q-----L-VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSG 190 (458)
T ss_pred c-----c-ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhh
Confidence 0 0 001112334678999999999999999999999999999988877666 7888999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCC
Q 006047 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (663)
+...+.++..|+++++.+. ..+.+.+ .++|.+..+|+.+..+......
T Consensus 191 ~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------- 238 (458)
T PRK09029 191 QGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------- 238 (458)
T ss_pred hHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc----------------------------
Confidence 8877788999999998764 4566666 3789999999998877542110
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCc
Q 006047 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (663)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 442 (663)
..++|.+++||+++++.+.+.++. ++.++++.||+||++...+..... ...++|+
T Consensus 239 ---------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G~ 293 (458)
T PRK09029 239 ---------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRAD---GLAGVGS 293 (458)
T ss_pred ---------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceeccCCC---CCCCCCC
Confidence 036899999999999999998886 499999999999998765443322 1256999
Q ss_pred cccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceee
Q 006047 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFK 522 (663)
Q Consensus 443 p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~ 522 (663)
|++++++++++ |||+++|+.++.||+++++.+.....+|||+|||+|++| ||++++.||.+|+|+
T Consensus 294 ~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~ 358 (458)
T PRK09029 294 PLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFF 358 (458)
T ss_pred CCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEeccccccee
Confidence 99999999976 899999999999999988887666678999999999999 999999999999999
Q ss_pred cCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHH
Q 006047 523 LSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGEL 599 (663)
Q Consensus 523 i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 599 (663)
+ +|++|+|.+||+.|.++|+|.+|+|++.++. +.++++|+++.+. ..++|
T Consensus 359 ~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--------------------------~~~~l 411 (458)
T PRK09029 359 S-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA--------------------------AVVNL 411 (458)
T ss_pred e-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc--------------------------CHHHH
Confidence 6 8999999999999999999999999998765 5788888866311 12355
Q ss_pred HHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 600 SRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 600 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
+++++ .+|++|++|.++.+++.. |+|.+||++|+.|++++++.
T Consensus 412 ~~~~~-~~l~~~~~P~~~~~~~~~------p~t~~gKi~r~~L~~~~~~~ 454 (458)
T PRK09029 412 AEWLQ-DKLARFQQPVAYYLLPPE------LKNGGIKISRQALKEWVAQQ 454 (458)
T ss_pred HHHHH-hhchhccCCeEEEEeccc------ccCcCCCcCHHHHHHHHHhc
Confidence 56666 689999999999999765 69999999999999988754
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=542.39 Aligned_cols=497 Identities=18% Similarity=0.182 Sum_probs=387.4
Q ss_pred CCCCCHHHHHHHHHHhCC-CCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 41 PGMESCWDVFRMAVERNP-NNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~P-d~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
+...++.+.|.++++++| ++.|+... ++ +.+||+||+++++++|++|++ |+++||+|+++++|+++++++
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~ 698 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT 698 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence 345778889999998887 45666432 22 569999999999999999975 999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHh--hcCCCcCCCCcEEEEecCCChhhHHHHhhcCc
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML--KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~--~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 197 (663)
++||+++|++++|+|+.++.+++.++++++++++++++++...... ...... .....++.+++......
T Consensus 699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-------- 769 (1140)
T PRK06814 699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEAL-EFGIRIIYLEDVRAQIG-------- 769 (1140)
T ss_pred HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHh-ccCceEEEehHhhccCC--------
Confidence 9999999999999999999999999999999999999875443210 000000 12234444432110000
Q ss_pred EEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh
Q 006047 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (663)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 277 (663)
....+.+..... ......+...++++++++|||||||.||+|.+||+++.+.+......+ +.+++|++++.+|+
T Consensus 770 ~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl 843 (1140)
T PRK06814 770 LADKIKGLLAGR-FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPV 843 (1140)
T ss_pred hHHHHHHHhhcc-CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecch
Confidence 000011111111 111111235779999999999999999999999999999888877766 78899999999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 006047 278 AHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (663)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
+|.+++.. .+.++..|+++++.+. +...+.+.++++++|+++++|+.+..+.+...
T Consensus 844 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--------------------- 902 (1140)
T PRK06814 844 FHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--------------------- 902 (1140)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc---------------------
Confidence 99999854 7778999999998764 66778899999999999999999887654210
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCc
Q 006047 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (663)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (663)
....+++|.+++||+++++++.+.+.+.++.++++.||+||++..+.......
T Consensus 903 --------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~- 955 (1140)
T PRK06814 903 --------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH- 955 (1140)
T ss_pred --------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-
Confidence 00115799999999999999999999888999999999999987765544332
Q ss_pred cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhh-ccccCCceecCcEEEEcCCCcEEE
Q 006047 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK-EVMVDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 435 ~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~-~~~~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...+++|+|+|++++++.+ .++ .++.|||+++|++++.||+++++... +...+|||+|||+|++|+||++++
T Consensus 956 ~~~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~ 1028 (1140)
T PRK06814 956 NKAGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITI 1028 (1140)
T ss_pred CCCCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEE
Confidence 2347899999999999987 322 34789999999999999998764332 223689999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.||+|++ +|++|+|.|||+++.+|++|.+++|++.+++ +.+++++...+ .
T Consensus 1029 ~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~-~---------------------- 1084 (1140)
T PRK06814 1029 KGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASD-A---------------------- 1084 (1140)
T ss_pred EecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCC-c----------------------
Confidence 9999999996 8999999999999999999999999997654 45666553211 0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
-.+++.+++++..++++++|.+++++++. |+|++||++|++|++++.+..
T Consensus 1085 ----~~~~l~~~~~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814 1085 ----TRAAFLAHAKAAGASELMVPAEIITIDEI------PLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred ----CHHHHHHHHHHcCCCcccCCcEEEEecCc------CCCCCCCCcHHHHHHHHHHhh
Confidence 02345556654569999999999998765 899999999999999877654
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=499.10 Aligned_cols=458 Identities=17% Similarity=0.154 Sum_probs=337.8
Q ss_pred cCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCC------hhhHhhcCCCcCCCCcEEEEecC
Q 006047 110 GVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK------IPEMLKTFPKTTEHLKTIVSFSK 183 (663)
Q Consensus 110 ~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~------~~~~~~~~~~~~~~~~~ii~~~~ 183 (663)
++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++.. .+.+.+.... .....++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEA--APAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhc--ccceEEEEecc
Confidence 589999999999999999999999999999999999999999999998642 1111111111 11222222211
Q ss_pred CChhhHHHHhhcCcEEEeHHHHHhcccc------cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhh
Q 006047 184 VKPEQREEIEKYGLAVYSWDEFLQLGEN------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257 (663)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~ 257 (663)
..... . .......++++++..... ........+++++++++|||||||.||||++||.+++.........
T Consensus 79 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 154 (499)
T PLN03051 79 GEPVA---V-PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH 154 (499)
T ss_pred CcccC---C-ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence 10000 0 000012345665532111 0111122356899999999999999999999999988766554444
Q ss_pred hhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHH
Q 006047 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (663)
Q Consensus 258 ~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 335 (663)
+ +++.+|++++.+|++|.+++..++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....
T Consensus 155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~ 229 (499)
T PLN03051 155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA 229 (499)
T ss_pred c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc
Confidence 4 67889999999999999888767788999999998864 7889999999999999999999999875421000
Q ss_pred HhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc--CCce
Q 006047 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHV 413 (663)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v 413 (663)
.. ....++||.+++||+++++++.+++++.. ++++
T Consensus 230 -----------------------------------~~--------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~ 266 (499)
T PLN03051 230 -----------------------------------ME--------GLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPV 266 (499)
T ss_pred -----------------------------------cc--------cCCchhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence 00 01114799999999999999988877633 4789
Q ss_pred eecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcc--cccccCChhhhhcc
Q 006047 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTV--FSGYYKREDLTKEV 491 (663)
Q Consensus 414 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~--~~gy~~~~~~~~~~ 491 (663)
++.||+||++..+...........+++|.|.++++++|+| +++..++.+.++.|||+++||.+ +.||++++ .+. .
T Consensus 267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~ 343 (499)
T PLN03051 267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDK-V 343 (499)
T ss_pred EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccc-e
Confidence 9999999987544332222222347899999999999999 77776655444689999999976 57999765 333 3
Q ss_pred ccCC----------ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhc-CcCcceEEEEeeCCC----C
Q 006047 492 MVDG----------WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL-VSAIDSVWVYGNSFE----S 556 (663)
Q Consensus 492 ~~~g----------~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~-~~~V~~~~v~~~~~~----~ 556 (663)
+.+| ||+|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+ ||+|.+|+|++.+++ +
T Consensus 344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~ 422 (499)
T PLN03051 344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPE 422 (499)
T ss_pred eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCce
Confidence 3344 6899999999999999999999999996 8999999999999985 999999999998754 4
Q ss_pred eEEEEE---ecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCc
Q 006047 557 FLVAIV---NPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTP 633 (663)
Q Consensus 557 ~~~a~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~ 633 (663)
.++|+| +++++. +....+.+.+.++++++ ++|+++..|..|.++++. |+|+
T Consensus 423 ~~~a~v~~~v~~~~~-------------------~~~~~~~l~~~~~~~l~-~~l~~~~~~~~i~~v~~l------P~t~ 476 (499)
T PLN03051 423 LLVIFLVLGEEKKGF-------------------DQARPEALQKKFQEAIQ-TNLNPLFKVSRVKIVPEL------PRNA 476 (499)
T ss_pred EEEEEEEcceecccc-------------------cccchHHHHHHHHHHHH-hhcCCccCCceEEEcCCC------CCCC
Confidence 688888 665431 00012345555555555 578887777778888665 8999
Q ss_pred ccccchHHHHHHHHHHHH
Q 006047 634 TYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 634 ~GKv~R~~l~~~~~~~~~ 651 (663)
+||++|++|++.+.+.+.
T Consensus 477 ~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 477 SNKLLRRVLRDQLKKELS 494 (499)
T ss_pred CccHHHHHHHHHHHHhhc
Confidence 999999999998876654
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=597.99 Aligned_cols=490 Identities=18% Similarity=0.178 Sum_probs=401.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|.++++++||++|+++. ++ .+||+||+++++++|+.|.+.|+++|++|+|++++++++++++
T Consensus 3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~ 3787 (4334)
T PRK05691 3717 PLEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMI 3787 (4334)
T ss_pred ccccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999876 43 5999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcC-CCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
|||+++|+++||++|.++.+++.++++.+++++++++............... .....++..+.
T Consensus 3788 lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 3851 (4334)
T PRK05691 3788 VGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE---------------- 3851 (4334)
T ss_pred HHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc----------------
Confidence 9999999999999999999999999999999999999876543322221110 01111222111
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
..........+.....+++.+|++|||||||.||||+++|+++.+.+......+ +++++++++...++.+
T Consensus 3852 -----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~f 3921 (4334)
T PRK05691 3852 -----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSF 3921 (4334)
T ss_pred -----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCch
Confidence 111111111222345679999999999999999999999999999998887777 8999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 280 ~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
..+...++.++..|+++++.+. ++..+++.++++++|++.++|+++..++.....
T Consensus 3922 d~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~--------------------- 3980 (4334)
T PRK05691 3922 DISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ--------------------- 3980 (4334)
T ss_pred hHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---------------------
Confidence 8888889999999999998764 789999999999999999999999887542110
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM 434 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (663)
..++||.+++|||++++++.+.|.+.+ ++.+++.||+||++..++.......
T Consensus 3981 ---------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~ 4033 (4334)
T PRK05691 3981 ---------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLA 4033 (4334)
T ss_pred ---------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccc
Confidence 014799999999999999998887664 7899999999999876654332211
Q ss_pred ---cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc--------CCceecCcEE
Q 006047 435 ---SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--------DGWFHTGDIG 503 (663)
Q Consensus 435 ---~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg 503 (663)
....++|+|+++++++|+| +.+. +++.|..|||+|+|+.+++||+++|+.|++.|. ++||||||+|
T Consensus 4034 ~~~~~~~~iG~p~~~~~~~v~d-~~~~--~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~ 4110 (4334)
T PRK05691 4034 STRGSYLPIGSPTDNNRLYLLD-EALE--LVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLA 4110 (4334)
T ss_pred cccCCcCCCCCccCCCEEEEEC-CCCC--CCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcce
Confidence 1225799999999999998 5554 455679999999999999999999999999882 4699999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeC--CCCeEEEEEecChHHHHHHHHHcCCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNS--FESFLVAIVNPNKDALERWAAENGVNGD 581 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~--~~~~~~a~v~~~~~~~~~~~~~~~~~~~ 581 (663)
++++||.|+++||.|++||+ +|++|.+.|||+.|.++|+|.+|+|+... .++.++|++++.....
T Consensus 4111 ~~~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~------------ 4177 (4334)
T PRK05691 4111 RRRSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL------------ 4177 (4334)
T ss_pred eecCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc------------
Confidence 99999999999999999998 79999999999999999999999887543 3468999998775320
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 582 FKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 582 ~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
... ...+.|+++++ +.||.|++|..++.++.. |+|++|||+|++|.+.
T Consensus 4178 -----~~~----~~~~~l~~~l~-~~Lp~ymvP~~~~~~~~l------P~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4178 -----AQG----ALLERIKQRLR-AELPDYMVPLHWLWLDRL------PLNANGKLDRKALPAL 4225 (4334)
T ss_pred -----cch----HHHHHHHHHHH-hhCChhhcCcceeecccC------CCCCCCcccHhhcCCC
Confidence 111 22344555555 789999999999988666 7999999999999764
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-56 Score=494.29 Aligned_cols=503 Identities=19% Similarity=0.214 Sum_probs=393.7
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
||.++|.+.++++||++|+.+. + +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|||+
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~ 74 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF 74 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 6999999999999999999864 2 569999999999999999999999999999999999999999999999
Q ss_pred hcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHH
Q 006047 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (663)
Q Consensus 125 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (663)
++|++++|+++.++.+++.++++.+++++++++......+.+.... ..+.+.++.++...... ...+..++++
T Consensus 75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 147 (533)
T PRK07798 75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR-LPKLRTLVVVEDGSGND------LLPGAVDYED 147 (533)
T ss_pred hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhcc-CCCccEEEEecCCcccc------cCCccccHHH
Confidence 9999999999999999999999999999999998776666554332 24556666665432110 0112446777
Q ss_pred HHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhc----cccC------CCCcEEEEc
Q 006047 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV----NEKL------TSEDVYVSY 274 (663)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~----~~~~------~~~d~~~~~ 274 (663)
++...... ..... ...+.++++|||||||.||+|+++|.++..........+... ...+ ..+++++..
T Consensus 148 ~~~~~~~~-~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 148 ALAAGSPE-RDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHhccCCc-CCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 66543321 11112 234557999999999999999999999887655432221000 0011 577899999
Q ss_pred CChhhHHHHHHHHHHHHcCcEEEEEc--C-CHHHHHHHhhhcCCcEEEeCcHHHHH-HHHHHHHHHhcCChhHHHHHHHH
Q 006047 275 LPLAHIFDRAIEEVFISNGAAIGFWR--G-DVKLLLEDIGELKPTIFCAVPRVLDR-IYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~l~~~P~~l~~-l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
+|++|..++...+.+++.|+++++.+ . ++..+++.++++++|.+.++|..+.. +...+...
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~--------------- 290 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEAR--------------- 290 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhccc---------------
Confidence 99999999988889999999999988 4 89999999999999999999877654 32211100
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceecc
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVS 429 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~ 429 (663)
....++++|.+++||+++++++.+++++.+ +..+++.||+||++.+....
T Consensus 291 -----------------------------~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 341 (533)
T PRK07798 291 -----------------------------GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT 341 (533)
T ss_pred -----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence 001125899999999999999999999887 78999999999997655443
Q ss_pred CCCCccccCccC--ccccCeEEEEeecCCCccccCCCCCC--CeEEEccCcccccccCChhhhhcccc----CCceecCc
Q 006047 430 LPNEMSMIGTVG--PPVPNVDVCLESVPEMEYDALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTGD 501 (663)
Q Consensus 430 ~~~~~~~~~~~G--~p~~~~~v~iv~~~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGD 501 (663)
..... ...| .+.++..+++++ +++... ..|+. |+++. ++.++.||++++..+.+.|. ++||+|||
T Consensus 342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~--~~g~~~~g~l~~-~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD 414 (533)
T PRK07798 342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPV--EPGSGEIGWIAR-RGHIPLGYYKDPEKTAETFPTIDGVRYAIPGD 414 (533)
T ss_pred CCCCC---ccCCCCccCCCceEEEEC-CCCCCC--CCCCCCeeEEEe-ecCccccccCChhhhHHhhccCCCCceEEcCc
Confidence 22211 2334 788899999998 666644 44555 66665 56799999999999888873 25999999
Q ss_pred EEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCC
Q 006047 502 IGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGV 578 (663)
Q Consensus 502 lg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~ 578 (663)
+|++|++|++++.||.+|+|+. +|++|+|.+||+++.++|+|.+++|++.++. +.+++++++.++.
T Consensus 415 ~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------- 483 (533)
T PRK07798 415 RARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGA---------- 483 (533)
T ss_pred EEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCC----------
Confidence 9999999999999999999995 8999999999999999999999999987643 5788888876531
Q ss_pred CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 579 NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
... .++|.++++ ..|+.+++|..+++++.. |+|++||++|+.|+++.++
T Consensus 484 ----------~~~----~~~l~~~l~-~~l~~~~~P~~i~~~~~i------P~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 484 ----------RPD----LAELRAHCR-SSLAGYKVPRAIWFVDEV------QRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred ----------CCC----HHHHHHHHh-hhcccCCCCeEEEEcccC------CCCCcchhhHHHHhhhhcc
Confidence 001 133444444 678899999999988665 7999999999999998764
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-56 Score=488.97 Aligned_cols=482 Identities=21% Similarity=0.227 Sum_probs=383.0
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEE
Q 006047 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (663)
Q Consensus 77 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~ 156 (663)
+.+||.||.+.++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCC
Q 006047 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGD 236 (663)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 236 (663)
++.....+.+........+..++..+... .....+++...... .......++.++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence 98776655443322211445555543211 11234444443221 1122355778999999999999
Q ss_pred CceEEeccHHHHHHHh--hhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhc
Q 006047 237 PKGVMVSNENIVTFIA--GVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGEL 313 (663)
Q Consensus 237 pK~V~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~ 313 (663)
||+|.++|.++..... ...... ........++++++..|++|.+++...+.++..|+++++.+. ++..+++.++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 233 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLALL-GFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY 233 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhhh-hhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence 9999999877654332 111111 001123467899999999999998887789999999988876 899999999999
Q ss_pred CCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEec
Q 006047 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393 (663)
Q Consensus 314 ~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~g 393 (663)
++|+++++|+.+..+.+...... . ...++++|.+++|
T Consensus 234 ~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------~--------~~~~~~lr~i~~~ 270 (502)
T PRK08276 234 RVTHSQLVPTMFVRMLKLPEEVR-----------------------------------A--------RYDVSSLRVAIHA 270 (502)
T ss_pred CCeEEEehHHHHHHHHhCccccC-----------------------------------C--------CCCcccceEEEec
Confidence 99999999999988764211000 0 0011589999999
Q ss_pred CCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEc
Q 006047 394 AAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473 (663)
Q Consensus 394 G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~ 473 (663)
|++++.++.+.+.+.++..+++.||+||++.++...........+++|.|+ ++.++++| +++. +++.|+.|||+++
T Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v~ 346 (502)
T PRK08276 271 AAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYFE 346 (502)
T ss_pred CCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEEE
Confidence 999999999999998899999999999999866655443333457899999 88999998 6554 4557799999999
Q ss_pred cCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEee
Q 006047 474 GSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGN 552 (663)
Q Consensus 474 g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~ 552 (663)
|+.++.||+++++.+...+ .++||+|||+|+++++|.+++.||.+|++++ +|.++++.+||.++.++|+|.+|++++.
T Consensus 347 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~ 425 (502)
T PRK08276 347 MDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGV 425 (502)
T ss_pred CCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeC
Confidence 9999999999999998888 4599999999999999999999999999996 8999999999999999999999999997
Q ss_pred CCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCC
Q 006047 553 SFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERD 629 (663)
Q Consensus 553 ~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~ 629 (663)
.++ +.++++|++..+.. ... ...+.+.+.++ ..|+.++.|..+++++..
T Consensus 426 ~~~~~~~~~~~~v~~~~~~~-----------------~~~----~~~~~i~~~~~-~~l~~~~~p~~i~~~~~l------ 477 (502)
T PRK08276 426 PDEEMGERVKAVVQPADGAD-----------------AGD----ALAAELIAWLR-GRLAHYKCPRSIDFEDEL------ 477 (502)
T ss_pred CCcccCceEEEEEEECCCCC-----------------CCh----hhHHHHHHHHH-hhccCCCCCcEEEEecCC------
Confidence 654 58999999876320 111 12234445555 688899999999999766
Q ss_pred ccCcccccchHHHHHHHHHHH
Q 006047 630 LLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 630 p~t~~GKv~R~~l~~~~~~~~ 650 (663)
|+|++||++|++|++.|.+.-
T Consensus 478 P~t~~GKi~r~~L~~~~~~~~ 498 (502)
T PRK08276 478 PRTPTGKLYKRRLRDRYWEGR 498 (502)
T ss_pred CCCcccchhHHHHHHHHHhhh
Confidence 799999999999999986543
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=499.06 Aligned_cols=518 Identities=18% Similarity=0.226 Sum_probs=372.3
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
++.++|++++..+|+++|+++........+..+.+||.||.+++.++|++|.+.| .+||+|+++++|++++++++|||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 6889999999999999999875110011123478999999999999999999999 689999999999999999999999
Q ss_pred hcCCeEeeccC---CCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCc-CCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 125 ALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKT-TEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 125 ~~G~v~v~l~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
++|++++|+++ ..+.+++.++|+.+++++++++++....+....... ......++.++..
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 144 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL---------------- 144 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc----------------
Confidence 99999999997 457889999999999999999987666544322111 0111122222110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhh-hhccccCCCCcEEEEcCChhh
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL-ESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~-~~~~~~~~~~d~~~~~~p~~~ 279 (663)
++. . ..........++++++++|||||||.||||.++|.++++++......+ .........++++++++|++|
T Consensus 145 ---~~~--~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 218 (578)
T PRK05850 145 ---DLD--S-PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218 (578)
T ss_pred ---ccc--c-CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence 000 0 000112234678999999999999999999999999998876654322 110011356889999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHH-HHHHHHHhcCChhHHHHHHHHHH
Q 006047 280 IFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIY-SGLNQKISSGGLLKKTLFNIAYS 352 (663)
Q Consensus 280 ~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 352 (663)
..|+.. ++.+++.|+++++.+. ++..+++.+++++++.. .+|..+..++ ......
T Consensus 219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~----------------- 280 (578)
T PRK05850 219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD----------------- 280 (578)
T ss_pred CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----------------
Confidence 999866 7788999999998863 68999999999999865 5565544332 211000
Q ss_pred hhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC------Cceeecccccccccce
Q 006047 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCAGT 426 (663)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~~~ 426 (663)
.+.....+++|.+++||+++++++.+++.+.++ ..+++.||+||++..+
T Consensus 281 -------------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 335 (578)
T PRK05850 281 -------------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYV 335 (578)
T ss_pred -------------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhhe
Confidence 000011147999999999999999999888763 3689999999987654
Q ss_pred eccCCCCc------------------------cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCccccccc
Q 006047 427 FVSLPNEM------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYY 482 (663)
Q Consensus 427 ~~~~~~~~------------------------~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~ 482 (663)
........ ....++|.|. +.+++++| +++ ..+++.|+.|||+|+|+.++.||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~-~~~~~~g~~Gel~v~g~~~~~gY~ 412 (578)
T PRK05850 336 ATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDT-CIECPAGTVGEIWVHGDNVAAGYW 412 (578)
T ss_pred eccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCC-CcCCCCCCEEEEEEecCccccccc
Confidence 43221110 0012345553 57899998 432 245667899999999999999999
Q ss_pred CChhhhhcccc------------CCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEE
Q 006047 483 KREDLTKEVMV------------DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVY 550 (663)
Q Consensus 483 ~~~~~~~~~~~------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~ 550 (663)
++++.+++.|. +|||+|||+|+++ +|++++.||.+|+|++ +|++|+|.|||++|.+||.+. |+|+
T Consensus 413 ~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~~-~~v~ 489 (578)
T PRK05850 413 QKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGGR-VAAI 489 (578)
T ss_pred CChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCCc-EEEE
Confidence 99999998873 4799999999998 9999999999999997 899999999999999999965 7777
Q ss_pred eeCCC--CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCC
Q 006047 551 GNSFE--SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIER 628 (663)
Q Consensus 551 ~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~ 628 (663)
+.+++ +.++|+|++.+... . +. ........+.+.+...+. .. ....|..+.+++. +.
T Consensus 490 ~v~~~~~~~~~a~v~~~~~~~--------~--~~----~~~~~~~~l~~~v~~~l~-~~--~~~~~~~~~~~~~----~~ 548 (578)
T PRK05850 490 SVPDDGTEKLVAIIELKKRGD--------S--DE----EAMDRLRTVKREVTSAIS-KS--HGLSVADLVLVAP----GS 548 (578)
T ss_pred EecCCCceEEEEEEEeccccC--------c--ch----hhhhhHHHHHHHHHHHHH-HH--hCCCceEEEEeCC----CC
Confidence 76654 68999998776420 0 00 000123344444444333 11 1234666666631 23
Q ss_pred CccCcccccchHHHHHHHHHHHHHHhcccc
Q 006047 629 DLLTPTYKKKRPQLLKHYQVTFLLVFSEYS 658 (663)
Q Consensus 629 ~p~t~~GKv~R~~l~~~~~~~~~~~~~~~~ 658 (663)
+|+|++||++|++|+++|.+. .|..++
T Consensus 549 iP~t~~GKi~R~~l~~~~~~~---~~~~~~ 575 (578)
T PRK05850 549 IPITTSGKIRRAACVEQYRQD---EFTRLD 575 (578)
T ss_pred cCCCCCchHHHHHHHHHHHcC---Cccccc
Confidence 489999999999999998653 355443
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=486.72 Aligned_cols=481 Identities=20% Similarity=0.228 Sum_probs=376.7
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEE
Q 006047 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (663)
Q Consensus 77 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~ 156 (663)
+.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++..+++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHhhcCCCcCCCCcEEEEecCCCh-hhHHHH----hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEcc
Q 006047 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKP-EQREEI----EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTS 231 (663)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 231 (663)
+......+.+.... . ..++....... .....+ ........++++.+.... .......+++++++|||
T Consensus 90 ~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS 161 (509)
T PRK12406 90 HADLLHGLASALPA---G-VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS 161 (509)
T ss_pred ccchhhhhhhhhhc---c-cceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence 88766544333211 1 11221111000 000000 000112234554443221 12234568999999999
Q ss_pred CCCCCCceEEeccHHHH---HHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHH
Q 006047 232 GTTGDPKGVMVSNENIV---TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLL 307 (663)
Q Consensus 232 GtTG~pK~V~~sh~~l~---~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~ 307 (663)
||||.||+|.++|.... .........+ ++.+++++++..|++|..+....+.++..|+++++.+. ++..++
T Consensus 162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (509)
T PRK12406 162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL 236 (509)
T ss_pred CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence 99999999998766543 3333333344 67899999999999998887776677888999888765 899999
Q ss_pred HHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCce
Q 006047 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRV 387 (663)
Q Consensus 308 ~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 387 (663)
+.++++++|.+.++|+.+..++....... +....+++
T Consensus 237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------~~~~~~~l 273 (509)
T PRK12406 237 QLIERHRITHMHMVPTMFIRLLKLPEEVR-------------------------------------------AKYDVSSL 273 (509)
T ss_pred HHHHHcCCeEEEccHHHHHHHHhCchhhc-------------------------------------------ccCCCCce
Confidence 99999999999999999988764211100 00112579
Q ss_pred EEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCC
Q 006047 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPR 467 (663)
Q Consensus 388 r~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~ 467 (663)
|.+++||+++++++.+.+.+.++..+++.||+||++.++..........++++|.|+++++++++| +++. +++.|+.
T Consensus 274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~ 350 (509)
T PRK12406 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGR--PLPQGEI 350 (509)
T ss_pred eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCC--CCCCCCc
Confidence 999999999999999999998899999999999999876655443334457899999999999999 6654 4567799
Q ss_pred CeEEEccCcccc-cccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcce
Q 006047 468 GEVCVKGSTVFS-GYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDS 546 (663)
Q Consensus 468 Gel~v~g~~~~~-gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~ 546 (663)
|||+++|+.++. +|+++++.+...+.++||+|||+|+++++|++++.||.+|+|++ +|.+|+|.+||+.|.++|+|.+
T Consensus 351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~ 429 (509)
T PRK12406 351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD 429 (509)
T ss_pred eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 999999998875 89999988888888999999999999999999999999999996 8999999999999999999999
Q ss_pred EEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCC
Q 006047 547 VWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVP 623 (663)
Q Consensus 547 ~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~ 623 (663)
+++++.++. +.++++|++.... .... ++|.+.++ ..++++++|..+++++..
T Consensus 430 ~~v~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~----~~l~~~l~-~~l~~~~~P~~i~~~~~i 484 (509)
T PRK12406 430 CAVFGIPDAEFGEALMAVVEPQPGA--------------------TLDE----ADIRAQLK-ARLAGYKVPKHIEIMAEL 484 (509)
T ss_pred EEEEeeeccccCceeEEEEEECCCC--------------------CCCH----HHHHHHHH-HhcccCCCCcEEEEeccC
Confidence 999987653 4688888876521 0011 23334444 678899999999988666
Q ss_pred CCCCCCccCcccccchHHHHHHHHH
Q 006047 624 FDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 624 ~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
|+|++||++|++|++.|.+
T Consensus 485 ------P~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 485 ------PREDSGKIFKRRLRDPYWA 503 (509)
T ss_pred ------CCCCccchhHHHHHHHHHh
Confidence 7999999999999987754
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=587.81 Aligned_cols=482 Identities=19% Similarity=0.218 Sum_probs=397.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|.++++.+|+++|+++. + +.+||+||.++++++|++|.+.|+++|++|+|++++++++++++
T Consensus 1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 1198 (4334)
T PRK05691 1128 PAQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198 (4334)
T ss_pred CccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999865 3 45999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|++|.++.+++.++++.++++++|++......+.... .. ..+.++..
T Consensus 1199 lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~---------------- 1256 (4334)
T PRK05691 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE-----GV-SAIALDSL---------------- 1256 (4334)
T ss_pred HHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc-----Cc-eEEeeccc----------------
Confidence 999999999999999999999999999999999999886544321110 00 11111110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.........+.....+++++|++|||||||.||||.++|+++.+.+.+....+ ++++++++++..|++|.
T Consensus 1257 -----~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 1326 (4334)
T PRK05691 1257 -----HLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFD 1326 (4334)
T ss_pred -----cccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence 00000001122234678999999999999999999999999999998877777 78899999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
.++..++.++..|+++++.+. ++..+.+.++++++|++.++|+++..+......
T Consensus 1327 ~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---------------------- 1384 (4334)
T PRK05691 1327 VSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA---------------------- 1384 (4334)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc----------------------
Confidence 888878899999999999753 789999999999999999999999987542100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCC-CCc
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLP-NEM 434 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~-~~~ 434 (663)
...+++|.+++||+++++++.+.+.+.+ +..+++.||+||++..++.... ...
T Consensus 1385 -------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 1439 (4334)
T PRK05691 1385 -------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAED 1439 (4334)
T ss_pred -------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeeccccc
Confidence 0115799999999999999999998776 6899999999999876554321 122
Q ss_pred cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc--------CCceecCcEEEEc
Q 006047 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--------DGWFHTGDIGEWQ 506 (663)
Q Consensus 435 ~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg~~~ 506 (663)
....++|+|+++++++|+| +++. +++.|+.|||+|+|+.+++||+++++.+.+.|. .+||+|||+|+++
T Consensus 1440 ~~~~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~ 1516 (4334)
T PRK05691 1440 GERSPIGRPLGNVLCRVLD-AELN--LLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWN 1516 (4334)
T ss_pred CCCCcccceeCCCEEEEEC-CCCC--CCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEEC
Confidence 2346899999999999999 6654 456779999999999999999999999998882 2499999999999
Q ss_pred CCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 507 PDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 507 ~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
+||.++++||.||+||+ +|++|.|.|||.+|.+||+|.+|+|++.++ +..+++++++..+.
T Consensus 1517 ~dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~---------------- 1579 (4334)
T PRK05691 1517 ADGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQ---------------- 1579 (4334)
T ss_pred CCCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCC----------------
Confidence 99999999999999998 799999999999999999999999987543 36899999876532
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
... .++|+++++ ..||.|++|..++.++.. |+|++||++|++|.+.
T Consensus 1580 ----~~~----~~~l~~~l~-~~Lp~y~vP~~~~~~~~l------P~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1580 ----EAE----AERLKAALA-AELPEYMVPAQLIRLDQM------PLGPSGKLDRRALPEP 1625 (4334)
T ss_pred ----CCC----HHHHHHHHH-HhCccccCCcEEEEcccc------CCCCCCCcChhhcCcc
Confidence 000 124555555 789999999999998665 8999999999999653
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=516.80 Aligned_cols=491 Identities=16% Similarity=0.170 Sum_probs=365.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
....++.++|.++++++||++|+++. + +.+||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34568999999999999999999864 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|++|. +++.++++.++++++|++++....+... ...+++++........ .. ......
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~-~~-~~~~~~ 582 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLD-LP-DDADVI 582 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCcccccc-CC-cchhhh
Confidence 9999999999999984 6899999999999999987766554321 1345555421100000 00 000001
Q ss_pred eHHHHHhcccc-cC-CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 201 SWDEFLQLGEN-KQ-FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 201 ~~~~~~~~~~~-~~-~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
+++++...... .. .......++++++++|| ||||.||++.++|.++..........+ .+..+|++++.+|++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~ 656 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH 656 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence 11111100000 00 01112236899999999 588888888888877665544433334 678999999999999
Q ss_pred hHHHHHHHH-HHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 279 HIFDRAIEE-VFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 279 ~~~g~~~~~-~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
|.+++...+ .++..|+++++.+. ++..+++.|+++++|+++++|+++..++.... .
T Consensus 657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~--~-------------------- 714 (994)
T PRK07868 657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA--F-------------------- 714 (994)
T ss_pred HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC--C--------------------
Confidence 999997654 44666666666654 89999999999999999999999988764200 0
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC-CceeecccccccccceeccCCCCcc
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
. ....+++|.++. +.+++++.+.+.+.++ +++++.||+||++...... . ..
T Consensus 715 ---------------~--------~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~ 766 (994)
T PRK07868 715 ---------------V--------LHGNHPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GA 766 (994)
T ss_pred ---------------c--------cCCCCceEEEec--CCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CC
Confidence 0 001147898763 3499999999998886 8899999999987544322 1 12
Q ss_pred ccCccCccccCe-EEEEeec----------CCCccccCCCCCCCeEEEccCcccccccCChhhh--hccc--cCCceecC
Q 006047 436 MIGTVGPPVPNV-DVCLESV----------PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT--KEVM--VDGWFHTG 500 (663)
Q Consensus 436 ~~~~~G~p~~~~-~v~iv~~----------~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~--~~~~--~~g~~~TG 500 (663)
..+++|+|+|++ +++|... +++...+++.|+.|||+++++..+ ++..+ +..| .+|||+||
T Consensus 767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~-----~p~~t~~~~~~~~~dgw~~TG 841 (994)
T PRK07868 767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPI-----DPTASVKRGVFAPADTWISTE 841 (994)
T ss_pred CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCC-----ChhhhhHhcccccCCEEEecc
Confidence 347899999997 6766421 223223456789999999997532 33332 2234 37999999
Q ss_pred cEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC--CeEEEEEecChHHHHHHHHHcCC
Q 006047 501 DIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE--SFLVAIVNPNKDALERWAAENGV 578 (663)
Q Consensus 501 Dlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~ 578 (663)
|+|++|+||+|+|+||.||+|++ +|.+|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++.
T Consensus 842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~---------- 910 (994)
T PRK07868 842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGA---------- 910 (994)
T ss_pred ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCC----------
Confidence 99999999999999999999996 7889999999999999999999999998764 5789999887632
Q ss_pred CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 579 NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
. .-.++|+++++ . ++.|++|+.|++++.. |+|++||++|++|++.-
T Consensus 911 --------~------~~~~~L~~~l~-~-l~~y~vP~~i~~v~~l------P~T~sGKi~r~~L~~~~ 956 (994)
T PRK07868 911 --------A------ITAADLTEALA-S-LPVGLGPDIVHVVPEI------PLSATYRPTVSALRAAG 956 (994)
T ss_pred --------c------CCHHHHHHHHH-h-CCCCcCCeEEEEeCCC------CCCccccEehHHHHhcC
Confidence 0 00235666666 3 8999999999999776 89999999999998664
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-55 Score=473.91 Aligned_cols=433 Identities=24% Similarity=0.315 Sum_probs=356.6
Q ss_pred eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCC
Q 006047 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (663)
Q Consensus 80 Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~ 159 (663)
||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCce
Q 006047 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239 (663)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~ 239 (663)
..... +. ...+..+................+++++++|||||||.||+
T Consensus 81 ~~~~~--------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKD--------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccc--------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 32110 00 00111111111111111233466889999999999999999
Q ss_pred EEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcCCHHHHHHHhhhcCCcEEE
Q 006047 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFC 319 (663)
Q Consensus 240 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~ 319 (663)
|.++|+++...+......+ +++++|+++..+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.
T Consensus 129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence 9999999999888877776 788999999999999999998788889999999988643 4999999999999999
Q ss_pred eCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcH
Q 006047 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399 (663)
Q Consensus 320 ~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~ 399 (663)
++|+.+..++..... .+++|.+++||+++++
T Consensus 203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~ 233 (436)
T TIGR01923 203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA 233 (436)
T ss_pred eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence 999999887642100 0379999999999999
Q ss_pred HHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccc
Q 006047 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (663)
Q Consensus 400 ~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~ 479 (663)
++.+.++. ++..+++.||+||++..++...........++|.|++++++++.. ++. ++.|||+++|+.++.
T Consensus 234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~ 304 (436)
T TIGR01923 234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK 304 (436)
T ss_pred HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence 99988876 599999999999998765544433322223589999999999944 221 167999999999999
Q ss_pred cccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---C
Q 006047 480 GYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---S 556 (663)
Q Consensus 480 gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~ 556 (663)
||++++..+...+.+|||+|||+|++++||++++.||.+|+|++ +|++|++.+||++|.+++.|.+++|++.+++ .
T Consensus 305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 383 (436)
T TIGR01923 305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQ 383 (436)
T ss_pred hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCC
Confidence 99998888877778899999999999999999999999999996 8999999999999999999999999987654 4
Q ss_pred eEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccc
Q 006047 557 FLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYK 636 (663)
Q Consensus 557 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GK 636 (663)
.++++|++.++. . .+.+.++++ ..|+++++|.++++++.. |+|++||
T Consensus 384 ~~~~~v~~~~~~------------------~--------~~~l~~~l~-~~l~~~~~p~~i~~~~~i------P~t~~GK 430 (436)
T TIGR01923 384 VPVAYIVSESDI------------------S--------QAKLIAYLT-EKLAKYKVPIAFEKLDEL------PYNASGK 430 (436)
T ss_pred eeEEEEEECCCC------------------C--------HHHHHHHHH-HhhhCCCCCeEEEEecCC------CCCCCCc
Confidence 678888776421 1 123444444 678899999999998665 7999999
Q ss_pred cchHHH
Q 006047 637 KKRPQL 642 (663)
Q Consensus 637 v~R~~l 642 (663)
++|++|
T Consensus 431 ~~r~~L 436 (436)
T TIGR01923 431 ILRNQL 436 (436)
T ss_pred eecccC
Confidence 999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=481.95 Aligned_cols=494 Identities=20% Similarity=0.226 Sum_probs=372.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
|.++.+.|...++.+|+.+++... ++. +.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la 73 (545)
T PRK07768 1 MSRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG 73 (545)
T ss_pred CchHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence 457899999999999999988654 442 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHH-------HHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhc
Q 006047 123 CNALGLHCVPLYDTLGAGAV-------EFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l-------~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 195 (663)
|+++|++++++++..+.+++ ..+++.++++++++++........... .
T Consensus 74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------------------~ 128 (545)
T PRK07768 74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-------------------------K 128 (545)
T ss_pred HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-------------------------c
Confidence 99999999999988776544 456777899999998764432211110 0
Q ss_pred CcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCC-cEEEEc
Q 006047 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE-DVYVSY 274 (663)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~-d~~~~~ 274 (663)
.+...+++++..... .......++++++++|||||||.||+|.++|.++...+......+ ++..+ |++++.
T Consensus 129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~ 200 (545)
T PRK07768 129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW 200 (545)
T ss_pred CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence 112344555544321 123345679999999999999999999999999999887766655 56665 899999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 006047 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (663)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (663)
+|++|..++.. +..++..|+++++.+. ++..+.+.++++++|++.++|..+..+...+...... .
T Consensus 201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-------- 271 (545)
T PRK07768 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP-G-------- 271 (545)
T ss_pred CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-c--------
Confidence 99999999876 5567999999988753 6778899999999999888887776665433111000 0
Q ss_pred HHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHh---cCC---ceeeccccccc
Q 006047 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV---ACA---HVLQGYGLTET 422 (663)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~ 422 (663)
...++++|.++++|+++++.+.+.+.+. +|. .+++.||+||+
T Consensus 272 --------------------------------~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~ 319 (545)
T PRK07768 272 --------------------------------AFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA 319 (545)
T ss_pred --------------------------------CCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 0011479999999999999999888774 454 49999999999
Q ss_pred ccceeccCCCC-------------------------ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcc
Q 006047 423 CAGTFVSLPNE-------------------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTV 477 (663)
Q Consensus 423 ~~~~~~~~~~~-------------------------~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~ 477 (663)
+..+.....+. .....++|+|++++++++++ +++. +++.|+.|||+++|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~--~~~~g~~Gel~v~~~~~ 396 (545)
T PRK07768 320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQ--VLPPRGVGVIELRGESV 396 (545)
T ss_pred ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCC--CCCCCCEEEEEEccCcc
Confidence 87654433221 11235799999999999999 6664 44567999999999999
Q ss_pred cccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeC--CC
Q 006047 478 FSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNS--FE 555 (663)
Q Consensus 478 ~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~--~~ 555 (663)
+.||++.+......+.+|||+|||+|+++++|+++++||.+|+|++ +|++|+|.+||+.|.++|+|.+++|++.. +.
T Consensus 397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~ 475 (545)
T PRK07768 397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAG 475 (545)
T ss_pred cccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCC
Confidence 9999986655554557889999999999999999999999999997 89999999999999999999998776532 22
Q ss_pred ---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccC
Q 006047 556 ---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLT 632 (663)
Q Consensus 556 ---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t 632 (663)
..+++++...... ++.....+.+.+++.+. ..+ ...|..+.+++. +.+|+|
T Consensus 476 ~~~~~~~~~v~~~~~~-------------------~~~~~~~l~~~~~~~l~-~~~--~~~p~~v~~v~~----~~lP~t 529 (545)
T PRK07768 476 HSREGFAVAVESNAFE-------------------DPAEVRRIRHQVAHEVV-AEV--GVRPRNVVVLGP----GSIPKT 529 (545)
T ss_pred CCceEEEEEEEecccc-------------------cHHHHHHHHHHHHHHHH-HHh--CCCccEEEEeCC----CcCCCC
Confidence 2444444333211 11112233333333222 111 146777887741 123899
Q ss_pred cccccchHHHHHHHH
Q 006047 633 PTYKKKRPQLLKHYQ 647 (663)
Q Consensus 633 ~~GKv~R~~l~~~~~ 647 (663)
++||++|+.|+++|.
T Consensus 530 ~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 530 PSGKLRRANAAELVT 544 (545)
T ss_pred CchhHHHHHHHHhcC
Confidence 999999999998774
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-52 Score=446.26 Aligned_cols=396 Identities=17% Similarity=0.145 Sum_probs=332.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEE
Q 006047 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (663)
Q Consensus 77 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~ 156 (663)
+.+||.||.++++++|++|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 56999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCC
Q 006047 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGD 236 (663)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 236 (663)
++.... + . ......++++++++|||||||.
T Consensus 86 ~~~~~~----------------~--~--------------------------------~~~~~~~~~~~~i~~TSGtTG~ 115 (414)
T PRK08308 86 GESDFT----------------K--L--------------------------------EAVNYLAEEPSLLQYSSGTTGE 115 (414)
T ss_pred cCcccc----------------c--c--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence 763110 0 0 0011246789999999999999
Q ss_pred CceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcC
Q 006047 237 PKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELK 314 (663)
Q Consensus 237 pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~ 314 (663)
||+|.+||+++.+.+..+...+ ....+|+++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.+++++
T Consensus 116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~ 190 (414)
T PRK08308 116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP 190 (414)
T ss_pred CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence 9999999999999888877766 6788999999999999999865 7778999999988876 8999999999999
Q ss_pred CcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecC
Q 006047 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394 (663)
Q Consensus 315 ~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG 394 (663)
+|.++++|+.+..+.+.... ..+++.++++|
T Consensus 191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G 221 (414)
T PRK08308 191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG 221 (414)
T ss_pred CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence 99999999999887642110 02578899999
Q ss_pred CCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc
Q 006047 395 APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474 (663)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g 474 (663)
+++++++.+.+++. +.++++.||+||++.+..... .....++|+|+|++++++.+ + .++.|||++++
T Consensus 222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~ 288 (414)
T PRK08308 222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM 288 (414)
T ss_pred CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence 99999999999875 678999999999986543221 22347899999999999875 2 24679999975
Q ss_pred CcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC
Q 006047 475 STVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF 554 (663)
Q Consensus 475 ~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~ 554 (663)
. ++||+|||+|++++||+++++||.+|+|++ +|++|+|.+||+++.++|+|.+|+|++.++
T Consensus 289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~ 349 (414)
T PRK08308 289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD 349 (414)
T ss_pred C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence 2 579999999999999999999999999997 899999999999999999999999998765
Q ss_pred C---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCcc
Q 006047 555 E---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLL 631 (663)
Q Consensus 555 ~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~ 631 (663)
+ +.++++++...+. . .+.++++++ .+|+++++|..+.+++.. |+
T Consensus 350 ~~~~~~~~~~v~~~~~~------------------~--------~~~l~~~l~-~~l~~~~~P~~i~~v~~i------P~ 396 (414)
T PRK08308 350 PVAGERVKAKVISHEEI------------------D--------PVQLREWCI-QHLAPYQVPHEIESVTEI------PK 396 (414)
T ss_pred CCCCceEEEEEEeCCCC------------------C--------HHHHHHHHH-HhCccccCCcEEEEeccC------CC
Confidence 4 5778888765321 1 123445555 689999999999998665 79
Q ss_pred CcccccchHHH
Q 006047 632 TPTYKKKRPQL 642 (663)
Q Consensus 632 t~~GKv~R~~l 642 (663)
|++||++|+.|
T Consensus 397 t~~GKi~r~~~ 407 (414)
T PRK08308 397 NANGKVSRKLL 407 (414)
T ss_pred CCCcCeehhhh
Confidence 99999999954
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=452.76 Aligned_cols=402 Identities=29% Similarity=0.490 Sum_probs=314.3
Q ss_pred HHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCe
Q 006047 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129 (663)
Q Consensus 50 l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 129 (663)
|+++|+++||++|+++. ++ +++||+||+++++++|..|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 68999999999999861 12 78999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCChHHHHHHHhhcCccEEEE----cCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHH
Q 006047 130 CVPLYDTLGAGAVEFIICHSGVSIAFV----EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205 (663)
Q Consensus 130 ~v~l~~~~~~~~l~~~l~~~~~~~vl~----~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (663)
++|++|.++.+++.++|+.++++++|+ +......+....... .....++.++....... ..+
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~ 138 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQE-DPSSSIIILDRDDLPKK-------------EAL 138 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTS-TTTEEEEEESHSSCTTC-------------HHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhccc-ccccccccccccccccc-------------ccc
Confidence 999999999999999999999999997 221112222222211 23344555543221100 011
Q ss_pred HhcccccCCCCCC-CCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-
Q 006047 206 LQLGENKQFDLPV-KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR- 283 (663)
Q Consensus 206 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~- 283 (663)
.......... .. ..++++++++|||||||.||+|.++|+++++.+..+. +... .+++ |++++++|++|.+|+
T Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~ 212 (417)
T PF00501_consen 139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI 212 (417)
T ss_dssp HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence 1000000000 00 0569999999999999999999999999999988865 1100 0223 699999999999999
Q ss_pred HHHHHHHHcCcEEEEEcC-C---HHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 284 AIEEVFISNGAAIGFWRG-D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 284 ~~~~~~l~~G~~~v~~~~-~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
..++.+++.|+++++++. . +..+++.++++++|+++++|+.+..+++ ..+.....
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~-~~~~~~~~-------------------- 271 (417)
T PF00501_consen 213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQ-SPEEKTKI-------------------- 271 (417)
T ss_dssp HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHH-HHHTTHHG--------------------
T ss_pred ccccccccccccccccccccccccccchhcccccccccccccccccccccc-cccccccc--------------------
Confidence 668899999999999987 2 4678999999999999999999999876 22110000
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCC-ceeecccccccccceeccC-CCCcccc
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSL-PNEMSMI 437 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~-~~~~~~~ 437 (663)
+...++++|.++++|+++++++.+++++.++. ++++.||+||++..++... .......
T Consensus 272 --------------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 331 (417)
T PF00501_consen 272 --------------------SKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP 331 (417)
T ss_dssp --------------------TTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred --------------------cccccccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence 00011569999999999999999999999987 9999999999999887663 2333345
Q ss_pred CccCccccCeEEEEeecCC-CccccCCCCCCCeEEEccCcccccccCChhhhhccccC-CceecCcEEEEcCCCcEEEee
Q 006047 438 GTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 438 ~~~G~p~~~~~v~iv~~~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G~l~~~G 515 (663)
+++|.|+|+++++|+| ++ +. +++.|+.|||+++|++++.||+++++.+.+.|.+ |||+|||+|++|+||+++++|
T Consensus 332 ~~~G~~~~~~~~~ivd-~~~~~--~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~G 408 (417)
T PF00501_consen 332 GSVGKPLPGVEVKIVD-PNTGE--PLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILG 408 (417)
T ss_dssp TSEBEESTTEEEEEEC-TTTSS--BESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEE
T ss_pred cccccccccccccccc-ccccc--cccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEE
Confidence 7899999999999999 44 44 4467799999999999999999999999999954 899999999999999999999
Q ss_pred eccceeec
Q 006047 516 RKKNIFKL 523 (663)
Q Consensus 516 R~~d~i~i 523 (663)
|.+|+||+
T Consensus 409 R~~~~i~~ 416 (417)
T PF00501_consen 409 RSDDMIKV 416 (417)
T ss_dssp EGSCEEEE
T ss_pred eeCCEEEe
Confidence 99999996
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=415.80 Aligned_cols=501 Identities=18% Similarity=0.180 Sum_probs=384.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
-...+++++|..+++++|+++|+++. +.. +++||+|+.+.++++|++|..+|++.||.|+++|+|.+|+++++
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 34578999999999999999999987 432 67999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|++.++|++...||++...+.|.+.|..++++++|++.+..+.+.+..+......-.+...+..+... +..
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~---------g~~ 217 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPD---------GIE 217 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCc---------hHH
Confidence 99999999999999999999999999999999999999988877777443322222333332222111 111
Q ss_pred eHHHHHhcccccC---CCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh
Q 006047 201 SWDEFLQLGENKQ---FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (663)
Q Consensus 201 ~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 277 (663)
++...+......+ ......+-.++++.+|||||||.||..++||......+..+...+ ++++.|+++..+|+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL 292 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL 292 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence 2333333333222 223345778999999999999999999999999999888777777 89999999999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 278 AHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
+|..+..+ +..++..|+|+++-.. ++..+|+...+|++|++...-.+.+-|++.-....++
T Consensus 293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er----------------- 355 (649)
T KOG1179|consen 293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER----------------- 355 (649)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc-----------------
Confidence 99998877 7789999999999887 9999999999999999999888887776522111111
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCc-eeecccccccccceeccCCCCc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTFVSLPNEM 434 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~~~~~~~ 434 (663)
..++|..+- .-+.++..+.|.+.||.. |.+.||+||+...........
T Consensus 356 ----------------------------~HkVRla~G--NGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~v- 404 (649)
T KOG1179|consen 356 ----------------------------QHKVRLAYG--NGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRV- 404 (649)
T ss_pred ----------------------------CceEEEEec--CCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCcc-
Confidence 146776664 448888999999889865 999999999876555442211
Q ss_pred cccCccCc------cccCeEEEEeec--------CCCccccCCCCCCCeEEEc--cCcc---cccccCChhhhhc-----
Q 006047 435 SMIGTVGP------PVPNVDVCLESV--------PEMEYDALSSTPRGEVCVK--GSTV---FSGYYKREDLTKE----- 490 (663)
Q Consensus 435 ~~~~~~G~------p~~~~~v~iv~~--------~~~~~~~~~~g~~Gel~v~--g~~~---~~gy~~~~~~~~~----- 490 (663)
+.+|+ -+--+++.-+|. +.|--.++++||.|.+.-+ .... |.||.++.+.+++
T Consensus 405 ---GA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD 481 (649)
T KOG1179|consen 405 ---GACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD 481 (649)
T ss_pred ---ccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence 22222 111122222231 3343456788999965432 2233 8999997766654
Q ss_pred cc--cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC----CeEEEEEec
Q 006047 491 VM--VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE----SFLVAIVNP 564 (663)
Q Consensus 491 ~~--~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~----~~~~a~v~~ 564 (663)
.| .|-||.|||+-.+|+.|++||.+|..|.++. +|++|+..|+|.+|..+.+++||.|.|+.-+ ..-.|.|+.
T Consensus 482 VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~ 560 (649)
T KOG1179|consen 482 VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL 560 (649)
T ss_pred hhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence 45 3449999999999999999999999999998 7999999999999999999999999996421 234445554
Q ss_pred ChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 565 NKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
.++. ....+.+-++++ +.||+|.+|.++.+.++. ++|.+.|..+.+|.+
T Consensus 561 ~p~~--------------------~~d~~~l~~~l~-----~~LP~YA~P~FlRl~~~i------~~TgTFKl~K~~L~~ 609 (649)
T KOG1179|consen 561 DPTT--------------------EKDLEKLYQHLR-----ENLPSYARPRFLRLQDEI------EKTGTFKLQKTELQK 609 (649)
T ss_pred cCcc--------------------cchHHHHHHHHH-----hhCccccchHHHHHHhhh------hcccchhhHHHHHHH
Confidence 4422 223334444443 789999999999998776 799999999999977
Q ss_pred H
Q 006047 645 H 645 (663)
Q Consensus 645 ~ 645 (663)
.
T Consensus 610 e 610 (649)
T KOG1179|consen 610 E 610 (649)
T ss_pred c
Confidence 5
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=425.47 Aligned_cols=389 Identities=22% Similarity=0.319 Sum_probs=324.7
Q ss_pred eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcC
Q 006047 80 TYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (663)
Q Consensus 80 Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~ 158 (663)
||.||.+.++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCc
Q 006047 159 KKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPK 238 (663)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK 238 (663)
.....+..... .++.+... +...................+++++++|||||||.||
T Consensus 81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 76654433221 12222110 0000011001111111245789999999999999999
Q ss_pred eEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcC
Q 006047 239 GVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELK 314 (663)
Q Consensus 239 ~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~ 314 (663)
+|.+||++++..+..+...+ .+.+++++++..|++|.+++..++.++..|+++++.+. .+..+.+.+++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP 211 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence 99999999999999887766 78899999999999999998888999999999998876 2688999999999
Q ss_pred CcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecC
Q 006047 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394 (663)
Q Consensus 315 ~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG 394 (663)
+|.+.++|..++.+.+... ...+++|.+++||
T Consensus 212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g 243 (408)
T TIGR01733 212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG 243 (408)
T ss_pred ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence 9999999999999876322 1115899999999
Q ss_pred CCCcHHHHHHHHHhcC-CceeecccccccccceeccCCCCcc----ccCccCccccCeEEEEeecCCCccccCCCCCCCe
Q 006047 395 APLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMS----MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGE 469 (663)
Q Consensus 395 ~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~----~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Ge 469 (663)
+++++++.+.+.+.++ ..+++.||+||++.++......... ...++|.|+++++++|++ +++ .+++.|+.||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Ge 320 (408)
T TIGR01733 244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDL--RPVPVGVVGE 320 (408)
T ss_pred ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCC--CCCCCCCceE
Confidence 9999999999999887 8999999999998776533221111 157899999999999999 554 4556779999
Q ss_pred EEEccCcccccccCChhhhhccccC-------C--ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhc
Q 006047 470 VCVKGSTVFSGYYKREDLTKEVMVD-------G--WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYAL 540 (663)
Q Consensus 470 l~v~g~~~~~gy~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~ 540 (663)
|+++|+.++.||++++..+.+.|.. | ||+|||+|++|++|++++.||.+|+|++ +|++++|.+||+++..
T Consensus 321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR 399 (408)
T ss_pred EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence 9999999999999999988877622 2 9999999999999999999999999996 8999999999999999
Q ss_pred CcCcceEEE
Q 006047 541 VSAIDSVWV 549 (663)
Q Consensus 541 ~~~V~~~~v 549 (663)
+++|.+|+|
T Consensus 400 ~~~v~~~~v 408 (408)
T TIGR01733 400 HPGVREAVV 408 (408)
T ss_pred CcchhhhcC
Confidence 999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=363.47 Aligned_cols=316 Identities=23% Similarity=0.291 Sum_probs=256.6
Q ss_pred CCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEE
Q 006047 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGF 298 (663)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~ 298 (663)
..++++++++|||||||.||+|.++|.++.......... +...++++..+|++|..++..++.++..|+++++
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~ 104 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE 104 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence 356899999999999999999999999998887765443 2345788999999999999888888999999887
Q ss_pred Ec----CCHHHHHHHhhhcC--CcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhH
Q 006047 299 WR----GDVKLLLEDIGELK--PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372 (663)
Q Consensus 299 ~~----~~~~~~~~~i~~~~--~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (663)
.. .++..+++.+++++ .++...+|..+..++.....
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------- 146 (358)
T PRK07824 105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------- 146 (358)
T ss_pred cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc--------------------------------------
Confidence 32 28999999999998 45566677766654321000
Q ss_pred HHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEe
Q 006047 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452 (663)
Q Consensus 373 ~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv 452 (663)
....++++.+++||+++++++.+.+.+ +++++++.||+||++..+ ...|.|++++++++.
T Consensus 147 --------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i~ 206 (358)
T PRK07824 147 --------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRVE 206 (358)
T ss_pred --------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCc-----------CcCceeCCCCEEEec
Confidence 001147999999999999999998886 599999999999987543 235899999999984
Q ss_pred ecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceecc
Q 006047 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAV 531 (663)
Q Consensus 453 ~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~ 531 (663)
+ |||+++|+.++.||++++..+ .| .+|||+|||+|++ ++|.+++.||.+|+|++ +|++|+|
T Consensus 207 ~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p 268 (358)
T PRK07824 207 D--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLP 268 (358)
T ss_pred C--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECH
Confidence 4 899999999999999887643 33 6789999999999 79999999999999997 8999999
Q ss_pred HHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCC
Q 006047 532 ENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKL 608 (663)
Q Consensus 532 ~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l 608 (663)
.+||++|.+||+|.+|+|++.+++ +.++++++...+. . ...++|+++++ +.|
T Consensus 269 ~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~--------------------~----~~~~~i~~~~~-~~l 323 (358)
T PRK07824 269 QVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP--------------------A----PTLEALRAHVA-RTL 323 (358)
T ss_pred HHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC--------------------C----cCHHHHHHHHH-hhC
Confidence 999999999999999999997654 5788888765421 0 11234555555 689
Q ss_pred CCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 609 KGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 609 ~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+.+++|..|++++.. |+|++||++|++|+++|.+
T Consensus 324 ~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 324 DRTAAPRELHVVDEL------PRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred ccccCCCEEEEecCC------CCCCCccccHHHHHHHhhc
Confidence 999999999999665 8999999999999998864
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=343.70 Aligned_cols=412 Identities=21% Similarity=0.230 Sum_probs=332.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
.+...++.+.|...+..+|+++|+... + ..+||+++..+++++|+.|.+.|+.+++.|+++++.+.+++++
T Consensus 223 ~~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~ 293 (642)
T COG1020 223 IPLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVA 293 (642)
T ss_pred CCccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHH
Confidence 344578999999999999999888764 2 5699999999999999999999999999999999889999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
++|++++|+.++|+++.++.+++.++++.++++.+++............ . +..+..
T Consensus 294 ~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~--------------- 349 (642)
T COG1020 294 LLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLP-----G----LALDDA--------------- 349 (642)
T ss_pred HHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCC-----c----cccccc---------------
Confidence 9999999999999999999999999999999999999833222100000 0 111100
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
...............+++.+|++|||||||.||||..+|+++.+.+......+ ..+..|+++...++.+
T Consensus 350 ------~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~f 418 (642)
T COG1020 350 ------LSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSF 418 (642)
T ss_pred ------cccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCccc
Confidence 00000000112234568999999999999999999999999999888877766 7889999999999976
Q ss_pred HHHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 280 ~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
......++.++..|+++++.+. ++..+...+.++++|++..+|..+..+..........
T Consensus 419 D~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~----------------- 481 (642)
T COG1020 419 DASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI----------------- 481 (642)
T ss_pred chhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcccc-----------------
Confidence 6667778999999999998775 8999999999999999999999999886531000000
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc--CCceeecccccccccceeccCCCC
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGTFVSLPNE 433 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~~ 433 (663)
...+.+|.+++||+.++..+...+.... ...+.+.||.||+...........
T Consensus 482 --------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~ 535 (642)
T COG1020 482 --------------------------SPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISA 535 (642)
T ss_pred --------------------------CCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEccc
Confidence 0002489999999999999988887655 468999999999665444332221
Q ss_pred ccc-cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccC-CceecCcEEEEcCCCcE
Q 006047 434 MSM-IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGDIGEWQPDGSL 511 (663)
Q Consensus 434 ~~~-~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G~l 511 (663)
... ...+|.|++++.++|.| ... .+++.|..||+++.|..+.+||+++++.+.+.|.. .+|+|||++++..||.+
T Consensus 536 ~~~~~~piG~p~~n~~~~ild-~~~--~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~ 612 (642)
T COG1020 536 ELESRVPIGRPVANTQLYILD-QGL--RPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGAL 612 (642)
T ss_pred ccCCCCCcceeeCCCeEEEEC-CCC--CcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeE
Confidence 111 36899999999999998 444 44555688999999999999999999999999955 49999999999999999
Q ss_pred EEeeeccceeecCCCceeccHHHHHHHhcCc
Q 006047 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVS 542 (663)
Q Consensus 512 ~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~ 542 (663)
.++||.|+++|+ .|+++.+.|||..+.++|
T Consensus 613 e~lgr~D~qvki-~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 613 EYLGRKDSQVKI-RGFRIELGEIEAALAEQP 642 (642)
T ss_pred EEeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence 999999999998 799999999999998875
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=309.37 Aligned_cols=537 Identities=13% Similarity=0.118 Sum_probs=374.6
Q ss_pred CCCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-
Q 006047 20 RPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC- 98 (663)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~- 98 (663)
...+++.+|.+.....-..- ..+|.++|++++..+||.+|+... ++.+.+-.++||++|++++.++|.+|...
T Consensus 749 lq~s~~~d~~~~~d~~~~~k---l~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~ 822 (1363)
T KOG3628|consen 749 LQQSGGRDRGNIVDNDSERK---LLTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKG 822 (1363)
T ss_pred hhhcccccccccccchhhhH---HHHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcc
Confidence 33455566665544433321 278999999999999999999988 88888889999999999999999999977
Q ss_pred CCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCC------ChHHHHHHHhhcCccEEEEcCCChhhHhhcCCC--
Q 006047 99 GVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTL------GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK-- 170 (663)
Q Consensus 99 gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~------~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~-- 170 (663)
-+++||+|++++++++|++++++||+.+|++++|+.|.- ....+..+++.+++.+|+++......+......
T Consensus 823 ~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~ 902 (1363)
T KOG3628|consen 823 HLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAH 902 (1363)
T ss_pred cCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHH
Confidence 789999999999999999999999999999999998753 334688899999999999998755433322211
Q ss_pred -cCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhccc--ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHH
Q 006047 171 -TTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247 (663)
Q Consensus 171 -~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l 247 (663)
....+..++.+++... ++..-..... ....++...++..+|++.+.--++|+--++.++|.++
T Consensus 903 ~~~s~~p~i~~~~~~~~--------------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHssl 968 (1363)
T KOG3628|consen 903 VDQSAIPLILVLPKLPE--------------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSL 968 (1363)
T ss_pred hhhhcchhhhcccccch--------------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHH
Confidence 1123333333333211 0111111111 1223444567789999999999999999999999999
Q ss_pred HHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeC
Q 006047 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAV 321 (663)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~ 321 (663)
++.++..+... .+.+..-++.+.+++.+.|+.. ++..++.|.+.++.+. ++..|+..|++|++.-++.+
T Consensus 969 la~Ck~iKe~~-----~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~ 1043 (1363)
T KOG3628|consen 969 LAFCKIIKETC-----QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPT 1043 (1363)
T ss_pred HHHHHHHHHHH-----ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchh
Confidence 99999999988 6777777777777777777765 6677999999877764 89999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHH
Q 006047 322 PRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401 (663)
Q Consensus 322 P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~ 401 (663)
-..+..+.+.+..+.. .++.. . ...++ ..++..-++....+
T Consensus 1044 ~~tln~c~~~l~t~~e---nl~~~-----------------------------g------nn~s~-s~vv~~~~RPr~al 1084 (1363)
T KOG3628|consen 1044 YSTLNLCQKGLETSVE---NLSKR-----------------------------G------NNTSS-SIVVPAEERPRIAL 1084 (1363)
T ss_pred HHHHHHHHhccccccc---hhhhh-----------------------------h------ccccc-ceeeecCCccHHHH
Confidence 8888887664332211 11000 0 00011 34445556666666
Q ss_pred HHHHHHhc---C---CceeecccccccccceeccCCCC------------------------cc--ccCccCccccCeEE
Q 006047 402 ETFLRVVA---C---AHVLQGYGLTETCAGTFVSLPNE------------------------MS--MIGTVGPPVPNVDV 449 (663)
Q Consensus 402 ~~~~~~~~---~---~~v~~~yG~tE~~~~~~~~~~~~------------------------~~--~~~~~G~p~~~~~v 449 (663)
.+.+.+.+ | ..+.-.|+..--..++.....+. .. .....|...+++++
T Consensus 1085 i~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i 1164 (1363)
T KOG3628|consen 1085 IASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDI 1164 (1363)
T ss_pred HHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCccccccee
Confidence 66666554 2 12334455433333332211100 00 01234888899999
Q ss_pred EEeecCCCccccCCCCCCCeEEEccCcccccccCChhhh-hccc----------cCCceecCcEEEEcC------C----
Q 006047 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT-KEVM----------VDGWFHTGDIGEWQP------D---- 508 (663)
Q Consensus 450 ~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~-~~~~----------~~g~~~TGDlg~~~~------~---- 508 (663)
.|++ |+.. .++..|+.||||+.|.+.+.+|++..+.. ...| ..+|.||||+|++.. +
T Consensus 1165 ~Ivn-PEtk-~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~ 1242 (1363)
T KOG3628|consen 1165 AIVN-PETK-GPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERH 1242 (1363)
T ss_pred EEeC-Cccc-cccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceee
Confidence 9999 5544 67888999999999999998887533221 1222 234999999999732 2
Q ss_pred CcEEEeeeccceeecCCCceeccHHHHHHH-hcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHHHHcCCCCChhhhhc
Q 006047 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIY-ALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCE 587 (663)
Q Consensus 509 G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l-~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (663)
.-||++|-.++.+.+ +|.+++|.+||..+ +.||.|..|+||.- ...++.++....+.
T Consensus 1243 ~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF~~--~glvVvviE~~gq~------------------- 1300 (1363)
T KOG3628|consen 1243 DLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHPSIGGCAVFQA--TGLVVVVIECHGQQ------------------- 1300 (1363)
T ss_pred eeEEEeecccceeee-cCcccCcchHHHHHHHhcccccceeeEee--CCeEEEEEEecCch-------------------
Confidence 259999999999998 79999999999988 89999999999984 36667777655522
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCCccceeEEEE-ccCCCCCCCCccCcccccchHHHHHHHH-HHHHHHhc
Q 006047 588 NPKAKEFILGELSRVAKEKKLKGFEFIKAVHL-EPVPFDIERDLLTPTYKKKRPQLLKHYQ-VTFLLVFS 655 (663)
Q Consensus 588 ~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~-~~~~~~~~~~p~t~~GKv~R~~l~~~~~-~~~~~~~~ 655 (663)
+..+.+=-.+ +..|.++.++..++. |+ + +.+|+++.|-.+|..+++.|. +.++..|.
T Consensus 1301 --~~~~LvPlIv-----~~vL~eH~iI~dvV~fV~-~---G~~p~~~~gEK~R~~I~~~w~~~kL~~~~v 1359 (1363)
T KOG3628|consen 1301 --ELADLVPLIV-----NVVLEEHYIILDVVAFVD-K---GVFPRNSRGEKQRAHILDSWLAGKLDPIYV 1359 (1363)
T ss_pred --hHhhhhHHHH-----HHHHhhcceEEEEEEEec-C---CccccCCchhhHHHHHHHHHHhcccceeee
Confidence 1111111111 234556666666544 54 2 455999999999999998874 46665554
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=303.29 Aligned_cols=287 Identities=18% Similarity=0.133 Sum_probs=223.8
Q ss_pred CCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCC--CCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEE
Q 006047 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT--SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (663)
Q Consensus 222 ~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~ 298 (663)
+..++++|||||||.||+|.+||+++.+.+..+...+ +.. +.+++++++|++|.+|+.+ ++.++..|+++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~ 169 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ 169 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence 5578999999999999999999999999888776665 443 4468999999999999865 6778889999988
Q ss_pred EcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHH
Q 006047 299 WRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (663)
Q Consensus 299 ~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (663)
.+. ++..+++.++.+ |+++++|++++.+.+..
T Consensus 170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~--------------------------------------------- 202 (386)
T TIGR02372 170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD--------------------------------------------- 202 (386)
T ss_pred cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC---------------------------------------------
Confidence 765 777888887654 89999999998875410
Q ss_pred HHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC-CceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCC
Q 006047 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPE 456 (663)
Q Consensus 378 ~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~ 456 (663)
..+++++. ++||+++++++.+.+++. + ..+++.||+||+++++.... +...|.|+|+.++++ + +
T Consensus 203 ----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~-~--~ 267 (386)
T TIGR02372 203 ----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA------PDDPFRLLPDLACFA-D--T 267 (386)
T ss_pred ----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC------CCCCcccCCCccccC-C--C
Confidence 00135665 678999999999999875 5 46999999999987654321 134567777766543 1 1
Q ss_pred CccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHH
Q 006047 457 MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLEN 536 (663)
Q Consensus 457 ~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~ 536 (663)
+. + .|+ ..|++|||+|++|++|+|++.||.||+|++ +|++|+|.+||+
T Consensus 268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~ 315 (386)
T TIGR02372 268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD 315 (386)
T ss_pred cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence 10 0 021 126899999999999999999999999996 899999999999
Q ss_pred HHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeE
Q 006047 537 IYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKA 616 (663)
Q Consensus 537 ~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~ 616 (663)
.|.+||+|.+|+|+. .++.+.|+|+++++. . .+.+.++|++++. ..|++|++|..
T Consensus 316 ~l~~~p~V~~~~v~~--~g~~~~a~vv~~~~~-------------------~---~~~~~~~l~~~~~-~~L~~~~~P~~ 370 (386)
T TIGR02372 316 ILERNPRVRAAAVRL--DGRRLKAFIVVAEDA-------------------D---EAELEIELRATAA-RHLPAPARPDR 370 (386)
T ss_pred HHHcCCCceEEEEEc--CCceEEEEEEECCCC-------------------C---hHHHHHHHHHHHH-HhCCCCCCCcE
Confidence 999999999999864 356889999887532 1 1223456666666 67999999999
Q ss_pred EEEccCCCCCCCCccCcccccc
Q 006047 617 VHLEPVPFDIERDLLTPTYKKK 638 (663)
Q Consensus 617 i~~~~~~~~~~~~p~t~~GKv~ 638 (663)
+.+++.. |+|++||++
T Consensus 371 i~~~~~l------P~t~~GKi~ 386 (386)
T TIGR02372 371 FRFGTEL------PRTGAGKLA 386 (386)
T ss_pred EEEcccC------CCCCCCCcC
Confidence 9998766 899999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=291.30 Aligned_cols=331 Identities=16% Similarity=0.145 Sum_probs=233.2
Q ss_pred CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH-HHHHHHHHHHHcCcEEEE
Q 006047 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI-FDRAIEEVFISNGAAIGF 298 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~-~g~~~~~~~l~~G~~~v~ 298 (663)
+.++++++++||||||.||+|.++|.++..........+.. .++.++|++++..++.+. .++...+.+...|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 55678899999999999999999999987765544333221 267789999887665532 333345567888999887
Q ss_pred EcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHH
Q 006047 299 WRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (663)
Q Consensus 299 ~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (663)
.+. ++..+++.|+++++|+++++|+.+..|++++........
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~------------------------------------- 193 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA------------------------------------- 193 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence 664 789999999999999999999999998765432210000
Q ss_pred HHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeeccccccccc--ceeccCCCCccccCccCccc--cCeEEEEee
Q 006047 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA--GTFVSLPNEMSMIGTVGPPV--PNVDVCLES 453 (663)
Q Consensus 378 ~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~--~~~~~~~~~~~~~~~~G~p~--~~~~v~iv~ 453 (663)
..++|.+++||+++++++.+.+++.+|+++++.||+||+++ +...+.. ...|.++ +++.++|+|
T Consensus 194 ------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd 261 (422)
T TIGR02155 194 ------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEIID 261 (422)
T ss_pred ------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc------cCCCceEecCeeEEEEEC
Confidence 03799999999999999999999999999999999999853 2221111 1123333 356778888
Q ss_pred cCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC-C-----cEEEeeeccceeecCCCc
Q 006047 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD-G-----SLKIIDRKKNIFKLSQGE 527 (663)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-G-----~l~~~GR~~d~i~i~~G~ 527 (663)
.+++ .+++.|+.|||++++. +.+.|..+||+|||+++++++ | .+++.||.+|+|++ +|.
T Consensus 262 ~~~g--~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~ 326 (422)
T TIGR02155 262 PHTG--EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGV 326 (422)
T ss_pred CCCC--CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCE
Confidence 3333 4556789999999873 233445689999999999875 4 46899999999997 799
Q ss_pred eeccHHHHHHHhcCcCcc-eEEEEeeCCC--CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHH
Q 006047 528 YVAVENLENIYALVSAID-SVWVYGNSFE--SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAK 604 (663)
Q Consensus 528 ~v~~~~IE~~l~~~~~V~-~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 604 (663)
+|+|.+||++|..||+|. .+.+.....+ +.+.+.|+..++... ....+..+.+.++|++.++
T Consensus 327 ~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~i~~~~~ 391 (422)
T TIGR02155 327 NVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYT---------------LRLHEQASLLAGEIQHTIK 391 (422)
T ss_pred EECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCccc---------------ccchHHHHHHHHHHHHHHH
Confidence 999999999999999998 4444433222 467776766543200 0011223444566666666
Q ss_pred HcCCCCccceeEEEEccCCCCCCCCccCcccccchH
Q 006047 605 EKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRP 640 (663)
Q Consensus 605 ~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~ 640 (663)
..+..+. .|.++. ++.+|+|+ ||++|.
T Consensus 392 -~~~~~~~---~v~~~~----~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 392 -QEVGVSM---DVHLVE----PGSLPRSE-GKARRV 418 (422)
T ss_pred -hccCcEE---EEEEEC----CCCccCCC-CCceEE
Confidence 4554442 344441 13448988 999874
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=270.13 Aligned_cols=521 Identities=16% Similarity=0.132 Sum_probs=335.1
Q ss_pred eecccccCCCCCCCCC------CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCC
Q 006047 27 YRSLFAKDGFPAPIPG------MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100 (663)
Q Consensus 27 ~~~~~~~~~~~~~~~~------~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv 100 (663)
++.....+.+|.+... +.++...+++.+...|...+..+-.. ....+...+.||.+.....+.++..|...|.
T Consensus 13 ~~~~~~~d~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~ 91 (1032)
T KOG1178|consen 13 LITYRQEDSLPDETKQIGFEQFMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGS 91 (1032)
T ss_pred eeccccccccCChhhhhhhhhhhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhccc
Confidence 4555556677755333 56788899999999999998877643 3334456789999999999999999999999
Q ss_pred CCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCC----hHHHHHHH---hhcCccEEEEcCCChhhHhhcCCCcCC
Q 006047 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG----AGAVEFII---CHSGVSIAFVEEKKIPEMLKTFPKTTE 173 (663)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~----~~~l~~~l---~~~~~~~vl~~~~~~~~~~~~~~~~~~ 173 (663)
..|+.|++++..+.++++..++.++.|..+++++|.++ ++++..+. ......+ ......-.+ ......+
T Consensus 92 ~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~l~i~~~--~~~~~~~ 167 (1032)
T KOG1178|consen 92 LRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRRLNIIDI--LLNSLFP 167 (1032)
T ss_pred ccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheecccee--hhhhhhHHH--Hhhcccc
Confidence 99999999999999999999999999999999999999 33222211 1111111 110000000 0000000
Q ss_pred CCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhcccc--cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHH
Q 006047 174 HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251 (663)
Q Consensus 174 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~ 251 (663)
+. .+.+..+.++.... ........-.+..+++.||||+||.||+|.-+|..+.+..
T Consensus 168 ~~----------------------sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~f 225 (1032)
T KOG1178|consen 168 KL----------------------SVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAF 225 (1032)
T ss_pred cc----------------------chhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhh
Confidence 00 01111122221111 1122234466789999999999999999999999999999
Q ss_pred hhhhhhhhhccccCCCCcEEEEcCCh-hhHHHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHH
Q 006047 252 AGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLD 326 (663)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~ 326 (663)
.++...+ +.+..+++-..... ++..-..++...+..|..+..+.. ++..+.+.+++|+++..+.+|++.+
T Consensus 226 dw~~~~f-----~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~ 300 (1032)
T KOG1178|consen 226 DWMFTTF-----PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQ 300 (1032)
T ss_pred hhccccC-----CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhh
Confidence 9987776 66677766333333 222223334455666666665543 5899999999999999999999998
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHH
Q 006047 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR 406 (663)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 406 (663)
+++.....-... . .+....+..... -+.|+....+|++...++...+.
T Consensus 301 ~l~~~~~~~~~~----------l-------------~~~~~~~dl~~~---------~~~Lkl~~~~~ep~~v~l~~s~~ 348 (1032)
T KOG1178|consen 301 LLLAILTTSLPL----------L-------------EHAFSLSDLLTK---------RSCLKLVVLGGEPLLVSLYTSTF 348 (1032)
T ss_pred hhhhhcCcchhh----------h-------------hhhhhccccccc---------chhheeeeecCCccchhhhhhhh
Confidence 887643221000 0 000000000000 04689999999999999887555
Q ss_pred HhcC-CceeecccccccccceeccCCCC---ccccC----------ccCccccCeEEEEeecCCCcccc--CCCCCCCeE
Q 006047 407 VVAC-AHVLQGYGLTETCAGTFVSLPNE---MSMIG----------TVGPPVPNVDVCLESVPEMEYDA--LSSTPRGEV 470 (663)
Q Consensus 407 ~~~~-~~v~~~yG~tE~~~~~~~~~~~~---~~~~~----------~~G~p~~~~~v~iv~~~~~~~~~--~~~g~~Gel 470 (663)
..+- .-...-|++++..+......-.. ..... .+|.+.. +.+.. ..+.+.+ ++-++.|.-
T Consensus 349 ~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~---~~~~~-~~~~~~~~~v~~~~l~~~ 424 (1032)
T KOG1178|consen 349 DLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTV---LESLY-RAGGEGEGGVGKGCLGAE 424 (1032)
T ss_pred hcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcc---eeeee-ccCcccCCcccceeeccc
Confidence 4442 22223488888765543321110 00001 1111111 11111 1111111 111122222
Q ss_pred EEccCcccccccCChhhhhccc------cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCc
Q 006047 471 CVKGSTVFSGYYKREDLTKEVM------VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAI 544 (663)
Q Consensus 471 ~v~g~~~~~gy~~~~~~~~~~~------~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V 544 (663)
...+..+..|| ..++.....+ .+.+|||||+|+..++|.+.+.||.+++||+ +|.++...+|+..+..||.|
T Consensus 425 ~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v 502 (1032)
T KOG1178|consen 425 QNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDV 502 (1032)
T ss_pred ccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcch
Confidence 22233334442 2233222222 3459999999998889999999999999997 79999999999999999999
Q ss_pred ceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEcc
Q 006047 545 DSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEP 621 (663)
Q Consensus 545 ~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~ 621 (663)
.++.+....+. +.+.+||++.... ++.. ...|+.++. ..|+.|++|..++.++
T Consensus 503 ~~~itl~~~~~~~~~~l~aFvv~~~~~-------------------~~~~----~~~i~~~l~-~~La~y~vPs~~V~l~ 558 (1032)
T KOG1178|consen 503 KEAITLARENSTVGQTLLAFVVERGGS-------------------KSVL----IRDIRNYLK-KELASYMLPSLVVPLA 558 (1032)
T ss_pred hhhheeeeeccccCceEEEEEeccCCC-------------------Cchh----HHHHHHhhc-ccccceecceEEEEhh
Confidence 99998876544 5899999988753 1212 556677777 8999999999999886
Q ss_pred CCCCCCCCccCcccccchHHHHHHHH
Q 006047 622 VPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 622 ~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
.. |+|++||||+++|.+.+.
T Consensus 559 ~v------Pl~~~GKvDkkaL~~~~s 578 (1032)
T KOG1178|consen 559 KV------PLNPNGKVDKKALLEYNS 578 (1032)
T ss_pred hC------CcCCCCCcChhhhhhhhh
Confidence 66 799999999999988443
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=234.47 Aligned_cols=262 Identities=17% Similarity=0.128 Sum_probs=189.1
Q ss_pred CCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHH-HHHHHHHcCcEEE
Q 006047 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAAIG 297 (663)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v 297 (663)
.+.++++.+.+||||||.||+|.+||.++..........+.. .++.++|+++...++.+..+.. +.+.+...|++++
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi 160 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII 160 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence 355788899999999999999999999988776655443321 2678899999988887655543 3455677888765
Q ss_pred EEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHH
Q 006047 298 FWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (663)
Q Consensus 298 ~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (663)
.. ......++.|+++++|.+.++|+.+..++..+.......
T Consensus 161 ~~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~-------------------------------------- 201 (445)
T TIGR03335 161 PE-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP-------------------------------------- 201 (445)
T ss_pred cC-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------------------------------------
Confidence 33 344567899999999999999999888776543321000
Q ss_pred HHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccc--cCeEEEEeecC
Q 006047 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV--PNVDVCLESVP 455 (663)
Q Consensus 378 ~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~--~~~~v~iv~~~ 455 (663)
...++|.+++||+++++++.+.+.+.+|+++++.||+||++....+.. ..|..+ +.+.+.|+| +
T Consensus 202 -----~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c~~--------~~g~h~~~d~~~vEIvD-p 267 (445)
T TIGR03335 202 -----AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGECQA--------VAGLHVPEDLVHLDVYD-P 267 (445)
T ss_pred -----ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEecC--------CCCccccCCceEEEEEc-C
Confidence 004799999999999999999999989999999999999863322211 123333 457889998 5
Q ss_pred CCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC-C----C----cEEEeeeccceeecCCC
Q 006047 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP-D----G----SLKIIDRKKNIFKLSQG 526 (663)
Q Consensus 456 ~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~----G----~l~~~GR~~d~i~i~~G 526 (663)
++. .+++.|+.|||++++-...... +.+.==-|+|||++++.. + | ++...||.+|++++ +|
T Consensus 268 ~~~-~~vp~Ge~GELvvT~L~~~~~r--------~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g 337 (445)
T TIGR03335 268 RHQ-RFLPDGECGRIVLTTLLKPGER--------CGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SG 337 (445)
T ss_pred CCC-CCCcCCCceEEEEEecCCCCcc--------CCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CC
Confidence 543 4567889999999985431000 000001389999998632 2 2 14456999999999 79
Q ss_pred ceeccHHHHHHHhcC---cCcc
Q 006047 527 EYVAVENLENIYALV---SAID 545 (663)
Q Consensus 527 ~~v~~~~IE~~l~~~---~~V~ 545 (663)
.+|+|.+||++|.++ +++.
T Consensus 338 ~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 338 VPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred EEeCHHHHHHHHhccCCCCCCC
Confidence 999999999999995 5554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=205.52 Aligned_cols=223 Identities=11% Similarity=0.041 Sum_probs=163.5
Q ss_pred HHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhhHHHHHHHHhcCC
Q 006047 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACNALGL 128 (663)
Q Consensus 50 l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 128 (663)
|..+++.+|+++|+++. +...++-+.+||+|+.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 56788899999999864 3221122579999999999999999998 7999999999999999999999999999999
Q ss_pred eEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHhc
Q 006047 129 HCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQL 208 (663)
Q Consensus 129 v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (663)
+++|+| .+++++++++++....+. . . +.++.+.......... ......+.++.+.+..
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 136 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRVA-GELPPGVIDFAPEVRV 136 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCCC-CCCCCcccchhhhhhc
Confidence 999995 688999999987766532 1 1 2233321100000000 0001122456665553
Q ss_pred ccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-HH
Q 006047 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EE 287 (663)
Q Consensus 209 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~ 287 (663)
......+.+...++|++.++||||+ +|.+++... ..+ +++++|+++ .+|++|.+|+.. ++
T Consensus 137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~ 197 (227)
T TIGR03089 137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL 197 (227)
T ss_pred cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence 2221111214466999999999986 566665554 233 688999999 999999999965 77
Q ss_pred HHHHcCcEEEEEcC-CHHHHHHHhhhcCCc
Q 006047 288 VFISNGAAIGFWRG-DVKLLLEDIGELKPT 316 (663)
Q Consensus 288 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t 316 (663)
.+++.|+++++++. ++..+++.|+++++|
T Consensus 198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 198 APLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 88999999988876 999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=198.40 Aligned_cols=283 Identities=19% Similarity=0.169 Sum_probs=211.5
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh-hHHHHHHHHHHHHcCcE
Q 006047 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA-HIFDRAIEEVFISNGAA 295 (663)
Q Consensus 217 ~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~-~~~g~~~~~~~l~~G~~ 295 (663)
...+.++...+-.||||||.|+.+.+++..+......+.+.+... +...+|++..+..+. +..|+.+.+.+-..|++
T Consensus 85 ~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~ 162 (438)
T COG1541 85 FAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGAT 162 (438)
T ss_pred ccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEE
Confidence 344567777788999999999999999999999888888877443 677888876654422 22334445556667777
Q ss_pred EEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHH
Q 006047 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (663)
Q Consensus 296 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (663)
++-... +....+..++.+++|++.++|+.+..|++.+........
T Consensus 163 vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~---------------------------------- 208 (438)
T COG1541 163 VIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD---------------------------------- 208 (438)
T ss_pred EEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh----------------------------------
Confidence 665544 899999999999999999999999999988776531100
Q ss_pred hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccce-eccCCCCccccCccCccc--cCeEEEE
Q 006047 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT-FVSLPNEMSMIGTVGPPV--PNVDVCL 451 (663)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~-~~~~~~~~~~~~~~G~p~--~~~~v~i 451 (663)
. .++|.+++|+|+++++..+.+.+.+|+.+++.||+||..+.. ..+.... |-.+ +...+.|
T Consensus 209 ~---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-------glhi~eD~~~~Ei 272 (438)
T COG1541 209 K---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-------GLHIWEDHFIFEI 272 (438)
T ss_pred h---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-------CCCcchhhceeee
Confidence 0 479999999999999999999999999999999999997663 2222111 2222 4577888
Q ss_pred eecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC----Cc-----EEEeeeccceee
Q 006047 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD----GS-----LKIIDRKKNIFK 522 (663)
Q Consensus 452 v~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----G~-----l~~~GR~~d~i~ 522 (663)
+| |+.. .+++.|+.|||.++.-. +.. +.-=-|+|||+.++.++ |+ -.+.||.+|++.
T Consensus 273 ~d-P~t~-e~l~dge~GelV~T~L~--~~~----------~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~ 338 (438)
T COG1541 273 VD-PETG-EQLPDGERGELVITTLT--KEG----------MPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLI 338 (438)
T ss_pred ec-CCcC-ccCCCCCeeEEEEEecc--ccC----------cceEEEEcCCeeEecccCCCCCCccccccccCcccccEEE
Confidence 88 4333 45667899999998743 111 11113999999998763 32 568999999999
Q ss_pred cCCCceeccHHHHHHHhcCcCcc-eEEEEeeC--CCCeEEEEEecCh
Q 006047 523 LSQGEYVAVENLENIYALVSAID-SVWVYGNS--FESFLVAIVNPNK 566 (663)
Q Consensus 523 i~~G~~v~~~~IE~~l~~~~~V~-~~~v~~~~--~~~~~~a~v~~~~ 566 (663)
+ .|.+|+|..||++|.+.+.+. +-.++... ..+.+...|+..+
T Consensus 339 ~-~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~ 384 (438)
T COG1541 339 V-RGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN 384 (438)
T ss_pred E-CCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence 8 599999999999999999999 54444433 3367777787765
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=202.06 Aligned_cols=514 Identities=14% Similarity=0.125 Sum_probs=344.0
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCc--hhhHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN-AIRTCGVEERGKCGIYGVNC--PEWII 118 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~-~L~~~gv~~gd~V~i~~~n~--~~~~~ 118 (663)
.+..+..+++++-.+++...|.++. |.++. ..++||..+..++.++|+ .|-+.|+.++|+|.+++..+ +++++
T Consensus 92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i 167 (1363)
T KOG3628|consen 92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI 167 (1363)
T ss_pred hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence 3677888999999999999999998 77766 899999999999999999 55566999999999999887 89999
Q ss_pred HHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 119 ~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
..++|..+|.+++|+++..+.+++...++....+++++.......+...... .+......|+...+.+
T Consensus 168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~------------~s~~k~v~~w~t~~~k 235 (1363)
T KOG3628|consen 168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSP------------VSLAKAVAWWKTNDFK 235 (1363)
T ss_pred hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCc------------ccHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999998766544333311 1111111111111111
Q ss_pred -EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhc---------------c
Q 006047 199 -VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV---------------N 262 (663)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~---------------~ 262 (663)
.++++ ....+...-. .++|.||.+++|.--|++++|. ++.+.+.+....... .
T Consensus 236 ~~~~~~---------k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v 304 (1363)
T KOG3628|consen 236 GNYTKD---------KIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV 304 (1363)
T ss_pred ceeehh---------hccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence 11111 1111122222 8999999999999999999998 777666654322110 1
Q ss_pred ccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHh
Q 006047 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (663)
Q Consensus 263 ~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (663)
.+....+.++..+.+....|+.+ .+.++++|.+.+.++. .+..+...+.+|+.+++..-...+.+..........
T Consensus 305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~ 384 (1363)
T KOG3628|consen 305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPK 384 (1363)
T ss_pred cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcc
Confidence 13345677777788887788876 7889999999887775 789999999999999999887777776543332211
Q ss_pred cCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc----C---
Q 006047 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA----C--- 410 (663)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~----~--- 410 (663)
+.. .+.+-+....+++|.+.+..+.+.++........+ |
T Consensus 385 a~~----------------------------------s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~ 430 (1363)
T KOG3628|consen 385 ATL----------------------------------SFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN 430 (1363)
T ss_pred ccc----------------------------------chhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcC
Confidence 111 11222223337999999999999998766665543 1
Q ss_pred ---------------CceeecccccccccceeccCCCCc-----------------------------cccCccCccccC
Q 006047 411 ---------------AHVLQGYGLTETCAGTFVSLPNEM-----------------------------SMIGTVGPPVPN 446 (663)
Q Consensus 411 ---------------~~v~~~yG~tE~~~~~~~~~~~~~-----------------------------~~~~~~G~p~~~ 446 (663)
.-....-++.|.+......+.... .....+|...||
T Consensus 431 ~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g 510 (1363)
T KOG3628|consen 431 VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPG 510 (1363)
T ss_pred cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceeccc
Confidence 112222233444433322222000 001234666665
Q ss_pred -eEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc------C-------CceecCcEEEEcCCCcEE
Q 006047 447 -VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------D-------GWFHTGDIGEWQPDGSLK 512 (663)
Q Consensus 447 -~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~------~-------g~~~TGDlg~~~~~G~l~ 512 (663)
+.+.+++ ++....+..+++|||||.+++...+|+.-+..+...|. . .|.|||-+|++. +|.+|
T Consensus 511 ~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~ 587 (1363)
T KOG3628|consen 511 DATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIY 587 (1363)
T ss_pred ceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEE
Confidence 5566665 55557777889999999999999999988887776661 1 289999999997 66788
Q ss_pred EeeeccceeecCCCceec----------cHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 513 IIDRKKNIFKLSQGEYVA----------VENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 513 ~~GR~~d~i~i~~G~~v~----------~~~IE~~l~~~~~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
|+|-.+|.+.--.|..+. ...|+-+.+..+.|=++.+|- +++++.+++-.+...+.
T Consensus 588 vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~e~----------- 653 (1363)
T KOG3628|consen 588 VLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDATEE----------- 653 (1363)
T ss_pred EEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchhhh-----------
Confidence 877766666432343333 233566677788888888877 44444444444432110
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 583 KSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
..-+....+.+.+... +++..|. +.++ | .+.+|||+.|-+.-.+.++.|.+
T Consensus 654 ----~~~q~~~~v~q~l~~i---Hqv~vyC----iliv--P--~~tLPrt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 654 ----NSFQWMSRVFQALDSI---HQVGVYC----ILIV--P--ANTLPRTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred ----hhhhHHHHHHHHHHHH---hcccceE----EEEe--c--cccCCCccccccccHHHHHHHHc
Confidence 1112233444444433 2343333 3333 2 34568999988988888888754
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-18 Score=174.81 Aligned_cols=119 Identities=13% Similarity=-0.029 Sum_probs=99.4
Q ss_pred ccCCceecCcEEEE-cCCCcEEEeeeccceeecCCC---ceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEec
Q 006047 492 MVDGWFHTGDIGEW-QPDGSLKIIDRKKNIFKLSQG---EYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNP 564 (663)
Q Consensus 492 ~~~g~~~TGDlg~~-~~~G~l~~~GR~~d~i~i~~G---~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~ 564 (663)
+.+|||+|||+|++ |++|+|++.||.+ +| ++|+|. ||++|.+||+|.+|+|+|.+++ +.++|+|++
T Consensus 206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~ 278 (365)
T PRK09188 206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA 278 (365)
T ss_pred ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence 47899999999998 7999999999987 57 799999 9999999999999999998765 689999987
Q ss_pred ChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 565 NKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
..+. . .++|+++++ ..|+. ++|++|.+++.. |+|++||++|+.|++
T Consensus 279 ~~~~------------------~--------~~el~~~l~-~~L~~-kvP~~v~~v~~l------P~t~~GKi~R~~Lr~ 324 (365)
T PRK09188 279 ELPA------------------D--------EKSLRARLA-GAKPP-KPPEHIQPVAAL------PRDADGTVRDDILRL 324 (365)
T ss_pred CCCC------------------C--------HHHHHHHHH-hhchh-cCCcEEEEECCC------CCCCCCCccHHHHHH
Confidence 5310 1 135666666 78999 999999999766 899999999999998
Q ss_pred HHHHHHH
Q 006047 645 HYQVTFL 651 (663)
Q Consensus 645 ~~~~~~~ 651 (663)
...+..+
T Consensus 325 ~~~~~~~ 331 (365)
T PRK09188 325 IAMNQID 331 (365)
T ss_pred Hhhcccc
Confidence 7644333
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-14 Score=149.80 Aligned_cols=260 Identities=17% Similarity=0.171 Sum_probs=163.4
Q ss_pred eEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEc--CChhhHHHHHHHHHHHHcCcE-EEEEc
Q 006047 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY--LPLAHIFDRAIEEVFISNGAA-IGFWR 300 (663)
Q Consensus 224 ~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~--~p~~~~~g~~~~~~~l~~G~~-~v~~~ 300 (663)
-..+..||||||.|-.+..+..............+ .+.++..++++... .+. +... .+..... +...+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~--~~~g~~~g~r~a~~~~~~~-~ly~------~~~~~~~~~~~~~ 171 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKV--LPDGLFAKHRIAFFLRADN-NLYQ------SVNNRWISLDFFD 171 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhh--CccccccCCcEEEEEccCh-hHHH------HHHhccceeeecC
Confidence 34567899999999999999987654433332222 12244455554443 111 1111 1111111 22221
Q ss_pred --CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHH
Q 006047 301 --GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378 (663)
Q Consensus 301 --~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (663)
.+.+.+++.|++++|+++.++|+.+..|++++.+..-.
T Consensus 172 l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~---------------------------------------- 211 (430)
T TIGR02304 172 LLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT---------------------------------------- 211 (430)
T ss_pred CCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC----------------------------------------
Confidence 37899999999999999999999999998866542100
Q ss_pred HHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCc
Q 006047 379 VKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458 (663)
Q Consensus 379 ~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~ 458 (663)
..++.++++||.+++...+.+++.||+++++.||+|| |.+++.+..+.... -.-.--+|..++| +++.
T Consensus 212 ------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~lHl----~ed~~~vE~~ivD-~~~~ 279 (430)
T TIGR02304 212 ------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGTLHL----NEDLVHIEKQYLD-EHKR 279 (430)
T ss_pred ------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCCEEE----ccccEEEEeeEEC-CCCc
Confidence 2589999999999999999999999999999999999 54444332221111 0000012333666 4331
Q ss_pred cccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC----Cc----E-EEeeeccceeec--CCCc
Q 006047 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD----GS----L-KIIDRKKNIFKL--SQGE 527 (663)
Q Consensus 459 ~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----G~----l-~~~GR~~d~i~i--~~G~ 527 (663)
++.+|++-....-- ==-|+|||++.+..+ |. | .+.||.+|++++ .+|.
T Consensus 280 ---------~~~ViT~L~n~~~P------------lIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~ 338 (430)
T TIGR02304 280 ---------FVPIITDFTRTTQP------------IVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGD 338 (430)
T ss_pred ---------eEEEEecCCCccce------------EEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCC
Confidence 34455552211100 013899999887543 32 3 378999999984 3565
Q ss_pred ee--ccHHHHHHH-hcCcCcceEEEEeeCCCCeEEEEEecCh
Q 006047 528 YV--AVENLENIY-ALVSAIDSVWVYGNSFESFLVAIVNPNK 566 (663)
Q Consensus 528 ~v--~~~~IE~~l-~~~~~V~~~~v~~~~~~~~~~a~v~~~~ 566 (663)
.+ +|..++..+ ...++|.+..++... .+.+...+++..
T Consensus 339 ~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~ 379 (430)
T TIGR02304 339 EQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL 379 (430)
T ss_pred eEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence 55 888898875 567899999888754 444444554443
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-07 Score=94.52 Aligned_cols=236 Identities=16% Similarity=0.182 Sum_probs=140.2
Q ss_pred CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh-HHHHH----HHHHHHHcCc
Q 006047 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH-IFDRA----IEEVFISNGA 294 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~-~~g~~----~~~~~l~~G~ 294 (663)
+.+++..++.||||||.+--+.+.+..+..+...+...+..........-.++...|-.. ...+. .....+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 345677788889999998767777776776665555544321111111222233223221 11111 1222334455
Q ss_pred EEEEEcC--CHHHHHHHhh----hcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcc
Q 006047 295 AIGFWRG--DVKLLLEDIG----ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEAS 368 (663)
Q Consensus 295 ~~v~~~~--~~~~~~~~i~----~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (663)
...+-.. +...+...+. ..++..+++.|..+..++..+++......
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~---------------------------- 218 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR---------------------------- 218 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc----------------------------
Confidence 5333222 5666666554 56789999999988887766554322111
Q ss_pred hhhHHHhHHHHHHHcCCceEEEEecC------CCCc-HHHHHHHHHhcCC----ceeecccccccccceeccCCCCcccc
Q 006047 369 PIADKIVFDKVKQSFGGRVRLILSGA------APLT-PHVETFLRVVACA----HVLQGYGLTETCAGTFVSLPNEMSMI 437 (663)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~lr~i~~gG------~~l~-~~~~~~~~~~~~~----~v~~~yG~tE~~~~~~~~~~~~~~~~ 437 (663)
+.+..+.+-.|| +.++ .++.+.+.+.+|+ .+++.||+||.....+.+.....
T Consensus 219 --------------L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~--- 281 (365)
T PF04443_consen 219 --------------LPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF--- 281 (365)
T ss_pred --------------CCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCcc---
Confidence 002456666666 5575 4678888888887 79999999998765444422111
Q ss_pred CccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC--------C
Q 006047 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD--------G 509 (663)
Q Consensus 438 ~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~--------G 509 (663)
+.|-- +.|.| ++ +..+++.|+.|-|-+-++.... |. +..-|.|+|.+..+ .
T Consensus 282 -----~~p~w-V~iRD-p~-tl~~~~~Ge~Gli~vidl~~~s-~p------------~~IlTeDlGvl~~~~~c~cr~g~ 340 (365)
T PF04443_consen 282 -----HVPPW-VIIRD-PE-TLEPLPPGETGLIQVIDLANTS-YP------------GFILTEDLGVLHGDDDCGCRKGK 340 (365)
T ss_pred -----cCCCe-EEEEC-CC-CCcCCCCCCeeEEEEEcccccC-CC------------cEEEEcceeeecCCCCCCCccCC
Confidence 12211 55557 43 4678888999999997765432 21 23679999987654 2
Q ss_pred cEEEeeecccee
Q 006047 510 SLKIIDRKKNIF 521 (663)
Q Consensus 510 ~l~~~GR~~d~i 521 (663)
++.++||.+..=
T Consensus 341 ~f~vlGR~~~ae 352 (365)
T PF04443_consen 341 YFEVLGRADGAE 352 (365)
T ss_pred EEEEEeCCCCCc
Confidence 699999987554
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-08 Score=77.59 Aligned_cols=68 Identities=21% Similarity=0.135 Sum_probs=51.1
Q ss_pred HHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCC
Q 006047 533 NLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609 (663)
Q Consensus 533 ~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~ 609 (663)
|||++|.+||+|.+|+|++.+++ +.++|+|++ . . ++|+++++ ..|+
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~-~----------------------------~~i~~~~~-~~l~ 49 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-D-E----------------------------EEIRDHLR-DKLP 49 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-H-H----------------------------HHHHHHHH-HHS-
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-e-e----------------------------cccccchh-hhCC
Confidence 79999999999999999998755 699999988 1 1 44555555 5699
Q ss_pred Cccce--eEEEEccCCCCCCCCccCcccc
Q 006047 610 GFEFI--KAVHLEPVPFDIERDLLTPTYK 636 (663)
Q Consensus 610 ~~~~p--~~i~~~~~~~~~~~~p~t~~GK 636 (663)
+|++| ..++.++..+ |+|++||
T Consensus 50 ~~~~P~~~~~v~~~~~l-----P~t~~GK 73 (73)
T PF13193_consen 50 PYMVPRRIRFVRLDEEL-----PRTPSGK 73 (73)
T ss_dssp GGGS-SEEEEEEESSSE-----EBETTSS
T ss_pred CcceeeEEEEccccCcC-----CCCCCCC
Confidence 99999 4455455532 8999998
|
... |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=94.04 Aligned_cols=333 Identities=14% Similarity=0.101 Sum_probs=153.3
Q ss_pred cEEEeHHHHHhcccc-cCCCCCCCCCCCeEEEEEccCCCCC-CceEEeccHHHHHHH--hhhhhhh---hhccccC-CCC
Q 006047 197 LAVYSWDEFLQLGEN-KQFDLPVKKKNDICTIMYTSGTTGD-PKGVMVSNENIVTFI--AGVKCLL---ESVNEKL-TSE 268 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~-pK~V~~sh~~l~~~~--~~~~~~~---~~~~~~~-~~~ 268 (663)
..+.+++++-..-.. .........++.+.+...||||||. +|-+++|...+.... .....++ ....+.. ..+
T Consensus 54 VPi~~Yed~~pyIeR~~~Ge~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~~p~~~~~g 133 (528)
T PF03321_consen 54 VPITDYEDYRPYIERIAEGEENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRNFPGLLFQG 133 (528)
T ss_dssp S--BEHHHHHHHHHHHHTT--CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHHSSS--TTS
T ss_pred CCCccHHHHHHHHHHHhcCCCCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 345666666433222 1222235567778999999999999 999999998876633 2221111 1111122 234
Q ss_pred cEEEEcCC-------------hhhHHHHHHH-HHHHHcCcEEEEEc-----CC-HH-----HHHHHhhhcCCcEEEeCcH
Q 006047 269 DVYVSYLP-------------LAHIFDRAIE-EVFISNGAAIGFWR-----GD-VK-----LLLEDIGELKPTIFCAVPR 323 (663)
Q Consensus 269 d~~~~~~p-------------~~~~~g~~~~-~~~l~~G~~~v~~~-----~~-~~-----~~~~~i~~~~~t~l~~~P~ 323 (663)
..+....+ ....+++... ...++. .....+. .+ .. .+..++++..++.+.+.++
T Consensus 134 k~~~l~~~~~~~~~~t~~Gi~~g~~s~~~~~~~~~~~~-~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p 212 (528)
T PF03321_consen 134 KSLYLSFSFAPPPLRTPGGIPIGSISGIPYRMIPPWFR-SWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFP 212 (528)
T ss_dssp E--EEEE------EE-TTS-EEE-HHHHHHT--SCCHH-G-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEH
T ss_pred cceEEEeecCCCcccCCCCeEEecccccchhhChHHHc-cCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCH
Confidence 42222211 1222222221 101111 0111111 01 11 1223344788888877555
Q ss_pred -HHHHHHHHHHHHHhcCC-hhHH-----HHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCC
Q 006047 324 -VLDRIYSGLNQKISSGG-LLKK-----TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396 (663)
Q Consensus 324 -~l~~l~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~ 396 (663)
.+..+.+.++......- .+.. .-.+--.+..++...... ......+. ++|+.+.+-+..
T Consensus 213 ~~l~~~~~~le~~~~~l~~dI~~G~~~~~~p~p~rA~~L~~~~~~~-----~~~~~~lW---------P~L~~v~~~~~g 278 (528)
T PF03321_consen 213 SFLLLLFRLLEKHWEELVEDIRDGTLSLLRPNPERAAELRAEFEKG-----RGIPKRLW---------PNLKLVSCWGGG 278 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS--C-S--HHHHHHHHHHHCCS-----TTHHHHHS---------TT--EEEEE-SG
T ss_pred HHHHHHHHHHHHhhhHhhHHhcCCccccCCCCHHHHHHHHHhhccc-----CCCHHHhC---------CCCcEEEEEcCC
Confidence 55555555555433210 0000 000000001111111100 11122222 688855554444
Q ss_pred CcHHHHHHHHHhcCC-c-eeecccccccccceeccCCCCccccCccCccccC---eEEEEeecCC------Ccc---ccC
Q 006047 397 LTPHVETFLRVVACA-H-VLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN---VDVCLESVPE------MEY---DAL 462 (663)
Q Consensus 397 l~~~~~~~~~~~~~~-~-v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~---~~v~iv~~~~------~~~---~~~ 462 (663)
-.....+.+++.+|. + +...|++||+... ........ .+..+++ .|..-++..+ ... ..+
T Consensus 279 ~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~-i~~~~~~~-----~~~l~~~~~ffEFip~~~~~~~~~~~~~~l~~~el 352 (528)
T PF03321_consen 279 SMAPYAPKLREYFGGVPIQSKGYGASEGFIG-IPLDPEDP-----GYVLAPDSGFFEFIPVDEDEQNPSEQPKTLLLHEL 352 (528)
T ss_dssp GGGGGHHHHHHHHTTS-EEE-EEEETTEEEE-EES-CCC-------EEE-TTSSEEEEEE-STT-------SSSEEGGG-
T ss_pred ChHHHHHHHHHHcCCCceeeccccccceEEE-EecCCCCC-----ceEeecCCeEEEEEeccCCcccccCCCceecHHHh
Confidence 444556677776753 3 4479999996432 22211111 1222222 2333333111 112 234
Q ss_pred CCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC--CC--cEEEeeeccceeecCCCceeccHHHHHHH
Q 006047 463 SSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP--DG--SLKIIDRKKNIFKLSQGEYVAVENLENIY 538 (663)
Q Consensus 463 ~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~--~G--~l~~~GR~~d~i~i~~G~~v~~~~IE~~l 538 (663)
..|+.-||.++.. .|.|+ |+.||+.++.. ++ .+.|+||.+.++.+ .|++++-.+|++++
T Consensus 353 e~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~gEkl~e~~v~~av 415 (528)
T PF03321_consen 353 EVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FGEKLSEEQVQEAV 415 (528)
T ss_dssp -TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS--EEHHHHHHHH
T ss_pred cCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ceeecCHHHHHHHH
Confidence 4556668888763 44444 99999998743 44 69999999999998 79999999999999
Q ss_pred hcC-----cCcceEEEEeeC---CCCeEEEEEecChH
Q 006047 539 ALV-----SAIDSVWVYGNS---FESFLVAIVNPNKD 567 (663)
Q Consensus 539 ~~~-----~~V~~~~v~~~~---~~~~~~a~v~~~~~ 567 (663)
.+. -.+.+..+.... .+.+.+.++.+...
T Consensus 416 ~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 416 ARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp HHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred HHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 554 236676666652 34677777777764
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00075 Score=74.54 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=77.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHhcC-C-ceeecccccccccceeccCCCCccccCccCc-ccc-CeEEEEeecC-CCc---
Q 006047 387 VRLILSGAAPLTPHVETFLRVVAC-A-HVLQGYGLTETCAGTFVSLPNEMSMIGTVGP-PVP-NVDVCLESVP-EME--- 458 (663)
Q Consensus 387 lr~i~~gG~~l~~~~~~~~~~~~~-~-~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~-~~~v~iv~~~-~~~--- 458 (663)
+.++..||.. .....++..++ . .+...|++||+....-..+.... ...+. .++ +.-..-++.+ .+.
T Consensus 307 i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p---~~~~~~l~~~~~ffEFiP~~~~~~~~~ 380 (597)
T PLN02249 307 LDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKP---SEVSYTIMPNMAYFEFLPHNHDGDGAL 380 (597)
T ss_pred EEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCCC---CCcceEecCCcEEEEeeecccCCcccC
Confidence 7777777755 55566666553 3 35579999996533322111111 11111 011 1111222111 111
Q ss_pred -------cccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC----CCcEEEeeeccceeecCCCc
Q 006047 459 -------YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP----DGSLKIIDRKKNIFKLSQGE 527 (663)
Q Consensus 459 -------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~i~~G~ 527 (663)
...+..|+.-||+|+. ..|.|+ |+.||..++.. -=.|.|+||.+.++.+ .|+
T Consensus 381 ~~~~~v~l~eVe~G~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GE 443 (597)
T PLN02249 381 DETSLVELADVEVGKEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESD 443 (597)
T ss_pred CCCcEecHHHcCCCCeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCCcceec-ccc
Confidence 1123445666778865 344443 89999998853 2369999999999997 899
Q ss_pred eeccHHHHHHHhc
Q 006047 528 YVAVENLENIYAL 540 (663)
Q Consensus 528 ~v~~~~IE~~l~~ 540 (663)
++.-.+++.++.+
T Consensus 444 Kl~e~~v~~Av~~ 456 (597)
T PLN02249 444 KTDEADLQKAVEN 456 (597)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999998865
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0069 Score=66.45 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=89.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCccccCe---EEEEeecCCC--
Q 006047 385 GRVRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV---DVCLESVPEM-- 457 (663)
Q Consensus 385 ~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~---~v~iv~~~~~-- 457 (663)
+++++|.+-...-.......++... |.++. .+|++||+....=..+..... ...+..+|+. |..-++..++
T Consensus 304 P~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~--~~sy~L~p~~~yFEFip~~~~~~~~ 381 (612)
T PLN02620 304 PNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPS--EVSYTLIPTMAYFEFLPVHRNNGVT 381 (612)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCcc--cceeeecCCcEEEEEeeccCccccc
Confidence 6788776644444445556665544 56554 699999964333222211111 1111222321 2222220000
Q ss_pred ------------------ccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEc----CCCcEEEee
Q 006047 458 ------------------EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQ----PDGSLKIID 515 (663)
Q Consensus 458 ------------------~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~----~~G~l~~~G 515 (663)
....+..|+.-||.|+. +.|.|+ ||.||+.++. ..-.|.|++
T Consensus 382 ~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLyR-------------YrlGDvv~V~Gf~n~~P~~~Fv~ 445 (612)
T PLN02620 382 NSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQFSFIC 445 (612)
T ss_pred ccccccccccccccCccccHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCceEEEEe
Confidence 01124456667888875 344443 8999998863 334699999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcC--------cceEEEEee--CCCCeEEEEEec
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSA--------IDSVWVYGN--SFESFLVAIVNP 564 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~--------V~~~~v~~~--~~~~~~~a~v~~ 564 (663)
|.+-+..+ .|+|.+-.++-.++.+... +.|...... ..+.+-+.++.+
T Consensus 446 R~~~~lsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El 503 (612)
T PLN02620 446 RKNVVLSI-DSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWEL 503 (612)
T ss_pred ecCceeec-ccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEE
Confidence 99999998 8999999888777743321 222222222 224577777775
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=65.04 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=79.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCccccCeE-EEEeecCCCc---
Q 006047 385 GRVRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVD-VCLESVPEME--- 458 (663)
Q Consensus 385 ~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~-v~iv~~~~~~--- 458 (663)
+++++|.+--..-.......++... |.++. .+|++||+....=..+..... ...+..+|+.. ...++.+++.
T Consensus 293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~~~~~ 370 (606)
T PLN02247 293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKNNGEV 370 (606)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCCcccc
Confidence 6778777644334455556666555 55555 599999964332222111110 11122223211 1112111111
Q ss_pred ------------------------cccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEc----CCCc
Q 006047 459 ------------------------YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQ----PDGS 510 (663)
Q Consensus 459 ------------------------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~----~~G~ 510 (663)
...+..|+.-||+|+. +.|.|+ ||.||+.++. .--.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~n~~P~ 434 (606)
T PLN02247 371 IHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLYR-------------YRVGDILMVTGFYNNAPQ 434 (606)
T ss_pred cccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCce
Confidence 1134456667888865 344433 8999998763 3347
Q ss_pred EEEeeeccceeecCCCceeccHHHHHHHhc
Q 006047 511 LKIIDRKKNIFKLSQGEYVAVENLENIYAL 540 (663)
Q Consensus 511 l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~ 540 (663)
|.|++|.+.+..+ .|+|..-.++-.++.+
T Consensus 435 ~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 435 FRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ 463 (606)
T ss_pred EEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence 9999999999998 8999999888887754
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.062 Score=44.38 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=30.9
Q ss_pred CceeccHHHHHHHhcCcCcc-eEEEEe--eCCCCeEEEEEecChH
Q 006047 526 GEYVAVENLENIYALVSAID-SVWVYG--NSFESFLVAIVNPNKD 567 (663)
Q Consensus 526 G~~v~~~~IE~~l~~~~~V~-~~~v~~--~~~~~~~~a~v~~~~~ 567 (663)
|.+|+|.+||++|.++|++. +..++- ..+.+.+...|...++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~ 45 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPG 45 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCc
Confidence 78999999999999999999 444433 2334677777877764
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.2 Score=47.10 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=76.2
Q ss_pred cceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch--hhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCcc
Q 006047 75 KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVS 152 (663)
Q Consensus 75 ~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~ 152 (663)
.+..+|+.|+..-+..+|..|...|..+||+|.....-+. .-+...+|+.++|+.++|+.+. .-+.-..++.+.++.
T Consensus 106 t~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~t 184 (438)
T COG1541 106 TVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPT 184 (438)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCc
Confidence 4577899999999999999999999999999988776332 2378889999999999999883 456678899999999
Q ss_pred EEEEcCCChhhHhhc
Q 006047 153 IAFVEEKKIPEMLKT 167 (663)
Q Consensus 153 ~vl~~~~~~~~~~~~ 167 (663)
++.+.....-.+.+.
T Consensus 185 vI~~tps~~l~lae~ 199 (438)
T COG1541 185 VIAATPSYLLYLAEE 199 (438)
T ss_pred EEEEChHHHHHHHHH
Confidence 999998766544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 663 | ||||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-20 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 9e-20 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-19 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 3e-19 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 5e-19 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 6e-19 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 6e-19 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 6e-19 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-17 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 8e-17 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 9e-16 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-14 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-14 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 2e-14 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 2e-13 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 5e-13 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 6e-13 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 7e-13 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 6e-12 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 5e-10 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 7e-10 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 9e-09 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 9e-09 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 1e-08 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 1e-08 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 1e-08 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 2e-08 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 3e-08 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 3e-07 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 4e-06 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 3e-05 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 3e-05 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 4e-05 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 7e-05 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 8e-05 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 9e-05 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 7e-04 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 8e-04 |
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 663 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 6e-66 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 2e-65 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 3e-64 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 3e-64 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 3e-63 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 5e-63 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 1e-62 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 2e-60 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 4e-60 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 7e-60 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-58 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 7e-57 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 8e-43 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 4e-42 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 4e-40 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 5e-40 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 3e-33 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 1e-27 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 1e-17 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 6e-17 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 8e-17 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 1e-16 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 2e-15 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 5e-15 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 5e-15 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 7e-13 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 3e-14 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 4e-11 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 7e-14 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 4e-13 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 5e-10 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 6e-66
Identities = 99/516 (19%), Positives = 180/516 (34%), Gaps = 105/516 (20%)
Query: 26 VYRSLFAKDGFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEV 84
Y+ GFP+ P + S D A E+ + E + E+
Sbjct: 6 KYKI-----GFPSLYYPKI-SLADRIDAAAEKFGEKTAIISAEPKFPSEFPESM-NFLEI 58
Query: 85 YDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEF 144
++ K+ + I GV + G+ N ++++ + A + VP+ + +E
Sbjct: 59 CEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEH 118
Query: 145 IICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204
I+ S + V KT ++ + G V S E
Sbjct: 119 ILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVV--------------GGEVNSLSE 162
Query: 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK 264
+ G ++ V + D+ I YT GTTG PKGVM+++ N+ +
Sbjct: 163 VMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG----- 217
Query: 265 LTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCA 320
L+ D V +P+ H + + + ++ G F + ++L E+I + K T A
Sbjct: 218 LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWA 274
Query: 321 VPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380
VP + L + +
Sbjct: 275 VPP----ALNVL-------------------------VNTLE------SSNKTYDWS--- 296
Query: 381 QSFGGRVRLILSGAAPLTPHV-ETFLRVVAC------AHVLQGYGLTETCAGTFVSLPNE 433
+++ +GA P+ P + E L++ A Q +G+TE C + P
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351
Query: 434 MSMIGTVGPPVPNVDVCL------ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ T G P+ ++++ + + E GE+ ++G +F GY+KRE
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE--------SGEIVIRGPNIFKGYWKREKE 403
Query: 488 TKEVMV-----DGWFHTGDIGEWQPDGSLKIIDRKK 518
+E +F TGD+G +G L DR K
Sbjct: 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVK 439
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-65
Identities = 113/512 (22%), Positives = 191/512 (37%), Gaps = 91/512 (17%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
+ PI S R +ER + + G +Y E
Sbjct: 10 IVVGPKP----FYPIEEG-SAGTQLRKYMERYAKLGAIA---FTNAVTGVDY--SYAEYL 59
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+ + A++ G+ G+ + NC E+ I + A +G+ P + +
Sbjct: 60 EKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
+ S +I F +K + +++ T ++ SKV D F
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR----------GYQCLDTF 169
Query: 206 LQLGENKQFDL------PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
++ F V +K + IM +SG+TG PKGV +++ENIVT + + +
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY 229
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKP 315
+++ ++ +P H F ++ G + F D + L+ + + K
Sbjct: 230 G--NQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKC 284
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
T VP +++ LN K + +K
Sbjct: 285 TSVILVPT----LFAILN-----------------------------KS----ELLNK-- 305
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+D + I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 306 YDL------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGD 358
Query: 435 SMIGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G G VP + L++ + + RGEVCVKG + GY + TKE+
Sbjct: 359 DKPGASGKVVPLFKAKVIDLDTKKSLGPNR-----RGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 492 M-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFK 522
+ +GW HTGDIG + + I+DR K++ K
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK 445
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 3e-64
Identities = 102/505 (20%), Positives = 175/505 (34%), Gaps = 104/505 (20%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ + R +P + V+ + TY ++ L + + + G+ +
Sbjct: 15 MKNIGWMLRQRATVSPRLQAY-----VEPSTDVRM--TYAQMNALANRCADVLTALGIAK 67
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + N E+ LG VP+ L A V FI+ SG + P
Sbjct: 68 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ + T+ + S E L+ + + +
Sbjct: 128 -VIDAIRAQADPPGTVTD---------------WIGADSLAERLRSAAADEPAVECGG-D 170
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D IMYTSGTTG PKGV+ ++E++ + + + D + LP+ H+
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHS-----AASSWASTIDVRYRDRLLLPLPMFHVAA 225
Query: 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341
G + D + I E + I AVP +L+ +
Sbjct: 226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMR------------ 273
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
P ++ R ++G AP+ +
Sbjct: 274 -------------------------QVPEFAELDAPDF--------RYFITGGAPMPEAL 300
Query: 402 ETFLRVVA--CAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCL-----ES 453
+++ A V+QGY LTE+C G + L + + G+ G DV +
Sbjct: 301 ---IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVI 357
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKI 513
E GEV +K + Y+ R + T++ +GWF TGDIGE +G L I
Sbjct: 358 REHGE---------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYI 408
Query: 514 IDRKKNIFKLSQGEYVAVENLENIY 538
DR K++ S G EN+Y
Sbjct: 409 KDRLKDMII-SGG--------ENVY 424
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 3e-64
Identities = 104/507 (20%), Positives = 179/507 (35%), Gaps = 94/507 (18%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
++RS IP + + + L ++G G TY +V
Sbjct: 8 IFRSKLP----DIYIPKNLPLHSYVLENLSNHSSKPCL-----INGANGDVY--TYADVE 56
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+V + + G+++ ++ + PE+++ + G +
Sbjct: 57 LTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
S + + ++ ++ +K + S + E
Sbjct: 117 AKASRAKLLITQACYYEKVKDFARES--DVKVMCVDSAPDG------------CLHFSEL 162
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265
Q EN + +D+ + Y+SGTTG PKGVM++++ ++T +A ++ N
Sbjct: 163 TQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDG-DNPNLYF 220
Query: 266 TSEDVYVSYLPLAHIF-DRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCA 320
SEDV + LP+ HI+ +I + GA I F ++ LL I + K +I
Sbjct: 221 HSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPV 277
Query: 321 VPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380
VP + + K P DK
Sbjct: 278 VPP----VMMSIA-----------------------------KS----PDLDKHDLS--- 297
Query: 381 QSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM--- 436
+R+I SG APL + +T A + QGYG+TE + L
Sbjct: 298 -----SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDI 352
Query: 437 -IGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G G V N + V E+ + + GE+C++G + GY + T +
Sbjct: 353 KPGACGTVVRNAEMKIVDPETGASLPRNQ-----PGEICIRGDQIMKGYLNDPEATSRTI 407
Query: 493 -VDGWFHTGDIGEWQPDGSLKIIDRKK 518
+GW HTGDIG D L I+DR K
Sbjct: 408 DKEGWLHTGDIGYIDDDDELFIVDRLK 434
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 3e-63
Identities = 102/512 (19%), Positives = 186/512 (36%), Gaps = 90/512 (17%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
+ + P+ + + A++R G D + TY E +
Sbjct: 7 IKKGPAP----FYPLEDG-TAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYF 57
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
++ +++ A++ G+ + + N ++ + + +G+ P D +
Sbjct: 58 EMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNS 117
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
+ S ++ FV +K + ++L K K I+ SK + S F
Sbjct: 118 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ----------GFQSMYTF 167
Query: 206 LQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+ F+ + I IM +SG+TG PKGV + + + + +
Sbjct: 168 VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF 227
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKP 315
++ + +S +P H F ++ G + F + +L L + + K
Sbjct: 228 G--NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLRSLQDYKI 282
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
VP ++S + S + DK
Sbjct: 283 QSALLVPT----LFSFFAK---------------------------------STLIDK-- 303
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+D + I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 304 YDL------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGD 356
Query: 435 SMIGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G VG VP + V L++ + + RGE+CV+G + SGY + T +
Sbjct: 357 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNAL 411
Query: 492 MV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFK 522
+ DGW H+GDI W D I+DR K++ K
Sbjct: 412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 443
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 5e-63
Identities = 92/497 (18%), Positives = 166/497 (33%), Gaps = 98/497 (19%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG- 104
++N ++ + GQ TY+ +Y + ++ +
Sbjct: 5 FWLYKQAQQNGHHIAITDGQESY-----------TYQNLYCEASLLAKRLK----AYQQS 49
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
+ G+Y N + II + AC + + L + + V + F +
Sbjct: 50 RVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCT----LPL 105
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDI 224
+ + + + S + + +DI
Sbjct: 106 ELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDI 165
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284
+IM+TSGTTG K V + N + + + ++S LP+ HI +
Sbjct: 166 ASIMFTSGTTGPQKAVPQTFRNHYA-----SAIGCKESLGFDRDTNWLSVLPIYHISGLS 220
Query: 285 IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343
+ + G + + + +L I + T VP+ + L Q
Sbjct: 221 VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQT----LNWLMQ--------- 267
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-E 402
E ++ IL G A L+ + E
Sbjct: 268 ------------------QGLHEPY-----------------NLQKILLGGAKLSATMIE 292
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDA 461
T L+ + +G+TETC+ + P + TVG P NVDV +++ +
Sbjct: 293 TALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEG--- 347
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521
GE+ +KG+ V +GY D +G+F+TGDI E +G + I DR+K++
Sbjct: 348 -----HGELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401
Query: 522 KLSQGEYVAVENLENIY 538
S G ENIY
Sbjct: 402 I-SGG--------ENIY 409
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 1e-62
Identities = 94/501 (18%), Positives = 160/501 (31%), Gaps = 109/501 (21%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
DV+R P+ + T+++ ++ + + GV +
Sbjct: 10 DVYRRNAALFPDRTAFMVDGVRL-----------THRDYLARAERLASGLLRDGVHTGDR 58
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165
I NC E I + A +G +P+ L A + F++ S+ +
Sbjct: 59 VAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118
Query: 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDIC 225
P +K + G + F L + F P D
Sbjct: 119 GVLPSLG-GVKKAYAI--------------GDGSGPFAPFKDLASDTPFSAPEFGAADGF 163
Query: 226 TIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI 285
I++T+ G P+G ++S N++ + + LT DV + LPL H+ +
Sbjct: 164 VIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGL 218
Query: 286 EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
G A D DI K T+ +L I L+Q
Sbjct: 219 MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI---LDQ---------- 265
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
A + +L+ + P T +E F
Sbjct: 266 -----AAPAQLASLR-----------------------------AVTGLDTPET--IERF 289
Query: 405 LRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEY 459
A +G +ET + + + + G P+ V + +P E
Sbjct: 290 EATCPNATFWATFGQSETSGLSTFAPYRD--RPKSAGRPLFWRTVAVVDAEDRPLPPGE- 346
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDR--K 517
GE+ ++G TVF GY+ T+ +GW HTGD+G + DG L R +
Sbjct: 347 -------VGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399
Query: 518 KNIFKLSQGEYVAVENLENIY 538
K + K + G EN+Y
Sbjct: 400 KELIK-TGG--------ENVY 411
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 2e-60
Identities = 95/451 (21%), Positives = 163/451 (36%), Gaps = 93/451 (20%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E+ +V N + G++ + E ++ A G +PL
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+++ I + I + K + K ++T+
Sbjct: 90 HELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG----------------PDGR 133
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
S + F + +D+ I+YTSGTTG KG M+S++N+ + L++
Sbjct: 134 GSLTDAAAGASE-AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLA---SNSLTLVD 189
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVF---ISNGAAIGFWRG-DVKLLLEDIGELKP 315
+ T +DV + LP+ H + + ++ F D +L+ + +
Sbjct: 190 YW--RFTPDDVLIHALPIYHTH--GLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RA 243
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
T+ VP Y+ L Q SP K
Sbjct: 244 TVLMGVPT----FYTRLLQ---------------------------------SPRLTKET 266
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
G +RL +SG+APL + A VL+ YG+TET T + +
Sbjct: 267 T--------GHMRLFISGSAPLLADTHREWSAKTGHA-VLERYGMTETNMNTS-NPYDGD 316
Query: 435 SMIGTVGPPVPNVDVCL------ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ G VGP +P V + + +P + G + VKG VF GY++ + T
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGKELPRGD--------IGMIEVKGPNVFKGYWRMPEKT 368
Query: 489 KEVMV-DGWFHTGDIGEWQPDGSLKIIDRKK 518
K DG+F TGD+G+ G + I+ R K
Sbjct: 369 KSEFRDDGFFITGDLGKIDERGYVHILGRGK 399
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 4e-60
Identities = 113/513 (22%), Positives = 183/513 (35%), Gaps = 90/513 (17%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
++RS IP S D + L ++G G TY +V+
Sbjct: 47 IFRSKLP----DIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVH 95
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+ ++ GV + + NCPE+++ A + G +
Sbjct: 96 VISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
S + E + + ++ + + E + E
Sbjct: 156 AKASNTKLIITEARYVDKIKPLQNDD--GVVIVCIDDNESVPIPE-------GCLRFTEL 206
Query: 206 LQLGENKQFDLPVKK--KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263
Q + + +D+ + Y+SGTTG PKGVM++++ +VT +A E+ N
Sbjct: 207 TQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG-ENPNL 265
Query: 264 KLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIF 318
S+DV + LP+ HI+ +I + GAAI F ++ LLLE I K T+
Sbjct: 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVA 322
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
VP I + K +K +D
Sbjct: 323 PMVPP----IVLAIA-----------------------------KS----SETEK--YDL 343
Query: 379 VKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM- 436
+R++ SGAAPL + + A + QGYG+TE +SL
Sbjct: 344 ------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 397
Query: 437 ---IGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
G G V N + V ++ + + GE+C++G + GY T E
Sbjct: 398 PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQ-----PGEICIRGHQIMKGYLNNPAATAE 452
Query: 491 VM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFK 522
+ DGW HTGDIG D L I+DR K + K
Sbjct: 453 TIDKDGWLHTGDIGLIDDDDELFIVDRLKELIK 485
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 7e-60
Identities = 86/508 (16%), Positives = 163/508 (32%), Gaps = 107/508 (21%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ ++ R A R P++ L G + T+ E+ V V + G+
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL-----AVPARGLRL--THAELRARVEAVAARLHADGLRP 53
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + + N + +I + A + LG L L + + +I ++ A +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG--R 111
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ ++ + I + + P ++
Sbjct: 112 QVADAIFQSGSGARIIF------------------LGDLVRDGEPYSYGPPIEDPQREPA 153
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
I YTSGTTG PK ++ + + + V + +V + +PL H+
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVG 210
Query: 283 -RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
A+ ++ L+ + + + T A P
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP------------------ 252
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
T + + A+ +R + A +
Sbjct: 253 ----THLDA---------------LAAAAAHAGSSLK------LDSLRHVTFAGATMPDA 287
Query: 401 V-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-------- 451
V ET + + + YG TE ++ P GT P +V +
Sbjct: 288 VLETVHQHLPGE-KVNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRIVRIGGGVD 342
Query: 452 ESVPEMEYDALSSTPRGEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGS 510
E V E GE+ V S + F GY + T E + DGW+ T D+ W P+G+
Sbjct: 343 EIVANGE--------EGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGT 394
Query: 511 LKIIDRKKNIFKLSQGEYVAVENLENIY 538
++I+ R ++ S G ENI+
Sbjct: 395 VRILGRVDDMII-SGG--------ENIH 413
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 1e-58
Identities = 85/468 (18%), Positives = 152/468 (32%), Gaps = 85/468 (18%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + + +A+RT GV + + ++ + G+ V L
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+++ HS + + + EH + S+ + +
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESEPR-------LA 161
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCL 257
++E + +DI +Y+SG+TG PKG + ++ N+ + L
Sbjct: 162 PLFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF-ISNGAAIGFWRG--DVKLLLEDIGELK 314
+ DV S L + F +S GA + + E +
Sbjct: 221 ------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHR 274
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
PT+F VP TL+
Sbjct: 275 PTVFYGVP----------------------TLYANMLVS--------------------- 291
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+ +R+ S L + E F C +L G G TE F+S
Sbjct: 292 --PNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEMLH-IFLSNRAG 347
Query: 434 MSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
GT G PVP ++ L +VP+ E G++ +KG + Y+ + +
Sbjct: 348 AVEYGTTGRPVPGYEIELRDEAGHAVPDGE--------VGDLYIKGPSAAVMYWNNREKS 399
Query: 489 KEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVA---VEN 533
+ + W +GD P+G R ++ K+S G+YV+ VE
Sbjct: 400 RATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEM 446
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 7e-57
Identities = 102/473 (21%), Positives = 155/473 (32%), Gaps = 115/473 (24%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ I G+ ++ E + + A G+ VPL G
Sbjct: 50 TYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGD 104
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ I+ S S+ P+ L
Sbjct: 105 KELAHILSDSAPSLVLAP----------------------------PDAELPPALGALER 136
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
D + D ++YTSGTTG PKG ++ + + L +
Sbjct: 137 VDVD----VRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALA---TTLDALAD 189
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---------DVKLLLEDI 310
+ + T EDV V LPL H+ + G RG + ++
Sbjct: 190 AW--QWTGEDVLVQGLPLFHVHG-------LVLGILGPLRRGGSVRHLGRFSTEGAAREL 240
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+ T+ VP +Y + + + + L K L
Sbjct: 241 ND-GATMLFGVPT----MYHRIAETLPADPELAKAL------------------------ 271
Query: 371 ADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVS 429
RL++SG+A L H E V++ YG+TET T V
Sbjct: 272 --------------AGARLLVSGSAALPVHDHERIAAATGRR-VIERYGMTETLMNTSVR 316
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
E GTVG P+P V++ L AL GE+ V+G +F+ Y R D T
Sbjct: 317 ADGE-PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATA 375
Query: 490 EVMV-DGWFHTGDIGEWQPDGSLKIIDRK-KNIFKLSQGEYVAVENLENIYAL 540
DG+F TGD+ PDG ++I+ RK ++ K S G I A
Sbjct: 376 AAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIK-SGG--------YKIGAG 419
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 8e-43
Identities = 70/503 (13%), Positives = 154/503 (30%), Gaps = 127/503 (25%)
Query: 47 WDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG 104
+ + V+ +P++ + G+R++ +Y E+ L + + G+ +
Sbjct: 33 TRILTVGVQSHPHSLAIICGERQL-----------SYIELDRLSTNLATRLAEKGLGKGD 81
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----K 160
+ N E+ I A G+ + + + I + +
Sbjct: 82 TALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFS 141
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ + + + I+ + + + ++++ D
Sbjct: 142 NNQFIDSLHDVNLSPEIILMLNHQATD------------FGLLDWIETPAETFVDFSSTP 189
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+++ + G+TG PK + ++ + + C L S + LP
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAP 242
Query: 279 HIFDRAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLDRIY 329
H F + S GA G + I + + VP
Sbjct: 243 HNF------MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVP------- 289
Query: 330 SGLNQKISSGGLLKKTLFNI------AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
+ + Y + +LK V + + + +V +
Sbjct: 290 ---------------SAVIMWLEKAAQYKDQIQSLKLL--QVGGASFPES-LARQVPEVL 331
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET-CAGTFVSLPNEMSMIGTVGP 442
+ + Q +G+ E T + +E + T G
Sbjct: 332 NCK--------------------------LQQVFGMAEGLVNYTRLDDSDEQ-IFTTQGR 364
Query: 443 PVPN------VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG 495
P+ + VD VPE E G + +G F GYY+ + +V D
Sbjct: 365 PISSDDEIKIVDEQYREVPEGE--------IGMLATRGPYTFCGYYQSPEHNSQVFDEDN 416
Query: 496 WFHTGDIGEWQPDGSLKIIDRKK 518
++++GD+ + PDG+L+++ R K
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIK 439
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 4e-42
Identities = 74/477 (15%), Positives = 150/477 (31%), Gaps = 95/477 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y+E+ + ++R G++ + N E I A LG+ V +
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ ++ + + + +F R
Sbjct: 112 SELNAYASQIEPALLIADRQH---------ALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCL 257
++ + + F +++ + GTTG PK + ++ + + C
Sbjct: 163 HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC- 220
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---------DVKLLLE 308
+ T + Y+ +P AH + S G+ F G L
Sbjct: 221 ------QFTQQTRYLCAIPAAHNY------AMSSPGSLGVFLAGGTVVLAADPSATLCFP 268
Query: 309 DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEAS 368
I + + + VP S Q + G + +LK V +
Sbjct: 269 LIEKHQVNVTALVP----PAVSLWLQALIEGE----------SRAQLASLKLL--QVGGA 312
Query: 369 PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET-CAGTF 427
++ + ++ G + + Q +G+ E T
Sbjct: 313 RLSAT-LAARIPAEIGCQ--------------------------LQQVFGMAEGLVNYTR 345
Query: 428 VSLPNEMSMIGTVGPPV-PNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+ E +I T G P+ P+ +V + +P+ E G + +G F GY
Sbjct: 346 LDDSAEK-IIHTQGYPMCPDDEVWVADAEGNPLPQGE--------VGRLMTRGPYTFRGY 396
Query: 482 YKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
YK +G++ +GD+ P+G + + R+K+ GE +A E +EN+
Sbjct: 397 YKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIAAEEIENL 452
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 4e-40
Identities = 86/521 (16%), Positives = 164/521 (31%), Gaps = 130/521 (24%)
Query: 47 WDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG 104
D+ R + + + G +Y+E+ ++ + G++++
Sbjct: 28 GDLLRDRAAKYGDRIAITCGNTHW-----------SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----K 160
+ + N E+ + A LG V + + + + + + + +
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPV 218
+ + LK I+ + +EFL L + + LP
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGE------------------AEEFLPLEDLHTEPVKLPE 178
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLP 276
K +D+ + + G+TG K + ++++ + + C L VY++ LP
Sbjct: 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALP 231
Query: 277 LAHIFDRAIEEVF--ISNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYS 330
+AH + + V + G + I K TI VP
Sbjct: 232 MAHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVP-------- 280
Query: 331 GLNQKISSGGLLKKTLFNI------AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFG 384
L + + +L+ V + + + +VK FG
Sbjct: 281 --------------PLAMVWMDAASSRRDDLSSLQVL--QVGGAKFSAE-AARRVKAVFG 323
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPP 443
+ Q +G+ E T + P E+ + T G P
Sbjct: 324 CTL--------------------------QQVFGMAEGLVNYTRLDDPEEII-VNTQGKP 356
Query: 444 V-PNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGW 496
+ P + + V E G + +G GYYK E+ DG+
Sbjct: 357 MSPYDESRVWDDHDRDVKPGE--------TGHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408
Query: 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
+ TGDI DG + + R K+ GE VA E +EN
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENH 448
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 5e-40
Identities = 117/521 (22%), Positives = 190/521 (36%), Gaps = 149/521 (28%)
Query: 64 GQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122
G++E+V G+ TY EVY +++ +R GV + G N +EA
Sbjct: 32 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH---LEA 88
Query: 123 CNALGLHCVPLYDTLGAGAV-------------EFIICHSGVSIAFVEEKKIPEMLKTFP 169
A VP G GAV +I+ H+ + + +P +++
Sbjct: 89 YFA-----VP-----GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLP-LVEAIR 137
Query: 170 KTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMY 229
+ ++ V + PE +++E L E +P + C + Y
Sbjct: 138 GELKTVQHFVVMDEKAPE----------GYLAYEEALG-EEADPVRVP---ERAACGMAY 183
Query: 230 TSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
T+GTTG PKGV+ S+ +V + A L++ L+ +DV + +P+ H+
Sbjct: 184 TTGTTGLPKGVVYSHRALVLHSLAA---SLVDGTA--LSEKDVVLPVVPMFHV------- 231
Query: 288 VFISNG-----AAIGFWRG----------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
N AA G D L+E T VP V
Sbjct: 232 ----NAWCLPYAA--TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW------- 278
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
L ++E++ RL++
Sbjct: 279 ------LALAD--------------------YLESTG-----------HRLKTLRRLVVG 301
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GTFVSLPNEM---------SMIGTVGP 442
G+A + F R V QGYGLTET + + + ++ G
Sbjct: 302 GSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL 359
Query: 443 PVPNVDVCLESVPEMEYDALSSTPR-----GEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496
P+P V + + E P+ GEV +KG + GYY E+ T+ + DG+
Sbjct: 360 PIPLVRLRVAD-EEGR-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 413
Query: 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEY---VAVENL 534
F TGDI W +G ++I DR K++ K S GE+ V +EN
Sbjct: 414 FRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENA 453
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 3e-33
Identities = 73/487 (14%), Positives = 141/487 (28%), Gaps = 124/487 (25%)
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGL 128
GK + ++E+ + + N + CG++ + + PEW + + C GL
Sbjct: 68 KGKELMW---NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 129 HCVPLYDTLGAGAVEFIICHSGVSIAFVEE---KKIPEMLKTFPKTTEHLKTIVSFSKVK 185
+P + + + + + S + +++ + P L+ + S+
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP----SLRIKLLVSEKS 180
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
+ ++ + L + + I +TSGT+G PK S
Sbjct: 181 CD----------GWLNFKKLLN-EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDV--------------YVSYLPLAHIFDRAIEEVFIS 291
++ L + D+ P A
Sbjct: 230 SLGLKAKMDAGWT-----GLQASDIMWTISDTGWILNILCSLMEPWAL------------ 272
Query: 292 NGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348
GA D ++L+ + P V R +L + +
Sbjct: 273 -GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVY-R-------------MLLQQDLS 317
Query: 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRV 407
SYKF +L + ++ L P E +
Sbjct: 318 ---SYKFPHL-----------------------------QNCVTVGESLLPETLENWRAQ 345
Query: 408 VACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDAL 462
+ + YG TET T + G +G DV + +P
Sbjct: 346 TGLD-IRESYGQTETGL-TCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT---- 399
Query: 463 SSTPRGEVCVKGSTV-----FSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRK 517
G++ ++ + FSGY D T + ++ GD G DG + + R
Sbjct: 400 ----EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRA 455
Query: 518 KNIFKLS 524
+I S
Sbjct: 456 DDIINSS 462
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-27
Identities = 93/494 (18%), Positives = 154/494 (31%), Gaps = 132/494 (26%)
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG-KCGIYGVNCPEWIIGMEACNALGL 128
G + T+K++ K N G+ +G + + ++ M + LG
Sbjct: 81 YGNEKIF---TFKDLKYYSDKAANFFVKHGIG-KGDYVMLTLKSRYDFWYCMLGLHKLGA 136
Query: 129 HCVPLYDTLGAGAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
VP L + + I +G+ I + E +PE + + +
Sbjct: 137 IAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVK----KKNDICTIMYTSGTTGDPKGVMVS 243
+ + + L+ + F+ P K DIC + ++SGT G PK V
Sbjct: 197 EGW---------IDFRKELE-ESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHD 246
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVY-----------VSYL---PLAHIFDRAIEEVF 289
N + I K + + ++ V
Sbjct: 247 NTYPLGHILTAKYWQN-----VEDDGLHYTVADSGWGKCVWGKLYGQWI----------- 290
Query: 290 ISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVP---RVLDRIYSGLNQKISSGGLLK 343
G A+ + + K +LE + T FCA P R L I L+
Sbjct: 291 --AGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFL--IKEDLSH--------- 337
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-E 402
Y F L + + PL P V
Sbjct: 338 ---------YNFSTL-----------------------------KYAVVAGEPLNPEVFN 359
Query: 403 TFLRVVACAHVLQGYGLTETCA--GTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVP 455
FL +++G+G TET TF + + G++G P P + L
Sbjct: 360 RFLEFTGIK-LMEGFGQTETVVTIATFPWMEPK---PGSIGKPTPGYKIELMDRDGRLCE 415
Query: 456 EMEYDALSSTPRGEVCVKGST-----VFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGS 510
E GE+ + +F Y K + T+E DG++HTGD+ DG
Sbjct: 416 VGE--------EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGY 467
Query: 511 LKIIDRKKNIFKLS 524
L + R +I K S
Sbjct: 468 LWFVGRADDIIKTS 481
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 1e-17
Identities = 66/305 (21%), Positives = 110/305 (36%), Gaps = 88/305 (28%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSGTTG+PKG M+ ++ I + L +T +D + ++ FD ++
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-----VTEKDRIGQFASIS--FDASVW 239
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
E+F + GA++ D + I + + T+ P
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP------------------ 281
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
T + +++ LI +G+A
Sbjct: 282 ----TYVVHLDPERILSIQ----------------------------TLITAGSATSPSL 309
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPN-----VDVCLES 453
V + V + YG TET CA T+V+ + +G P+ N VD L+
Sbjct: 310 VNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL 366
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH-------TGDIGEWQ 506
GE+C+ G + GY+KR +LT + VD F TGD W
Sbjct: 367 KSV-------GEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWL 418
Query: 507 PDGSL 511
DG++
Sbjct: 419 SDGNI 423
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 6e-17
Identities = 61/307 (19%), Positives = 102/307 (33%), Gaps = 85/307 (27%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I ++SGTTG PK + ++ I G L + ++ PL+ FD A
Sbjct: 169 INFSSGTTGRPKAIACTHAGITRLCLGQSFL------AFAPQMRFLVNSPLS--FDAATL 220
Query: 287 EVFIS--NGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
E++ + NG +L D+G L P + +++ +
Sbjct: 221 EIWGALLNGG---------CCVLNDLGPLDPGVLR---QLIGE------RGA-------- 254
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
+ S F+ L V+ P GG +L+ G PHV
Sbjct: 255 DSAWLTASL-FNTL------VDLDP-----------DCLGGLRQLLTGGDILSVPHVRRA 296
Query: 405 LRVVACAHVLQGYGLTETCAGTFVS---LPNEMSMIGTV--GPPVPN-----VDVCLESV 454
L H++ GYG TE TF + ++ + G + +D + +
Sbjct: 297 LLRHPRLHLVNGYGPTENT--TFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEI 354
Query: 455 PEMEYDALSSTP--RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH--------TGDIGE 504
E P GE+ G+ + GY T+ V+ + TGD
Sbjct: 355 AE---------PDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRAR 405
Query: 505 WQPDGSL 511
+ G L
Sbjct: 406 YDEQGRL 412
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 8e-17
Identities = 68/309 (22%), Positives = 109/309 (35%), Gaps = 90/309 (29%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
IMYTSGTTG PKG + ++ NI + V + + +D ++S A FD
Sbjct: 612 IMYTSGTTGKPKGNITTHANIQGLVKHVDYM------AFSDQDTFLSVSNYA--FDAFTF 663
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+ + + N A + D + L + I + + A
Sbjct: 664 DFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATT------------------ 705
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ F+ L +A G ++ G PH
Sbjct: 706 -----------AL-FNLL------TDAGE-----------DWMKGLRCILFGGERASVPH 736
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
V LR++ ++ YG TE A T + + I ++ G P+ N ++
Sbjct: 737 VRKALRIMGPGKLINCYGPTEGTVFA-TAHVVHDLPDSISSLPIGKPISNASVYILNEQS 795
Query: 452 ESVPEMEYDALSSTP--RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH-------TGDI 502
+ P GE+C+ G V GY R DLTKE ++ F TGD+
Sbjct: 796 QLQP----------FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDL 845
Query: 503 GEWQPDGSL 511
W PDG++
Sbjct: 846 ARWLPDGTI 854
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-16
Identities = 60/304 (19%), Positives = 98/304 (32%), Gaps = 76/304 (25%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I++TSGTTG PKGV +S++N+++F ++E + + ++ P + FD ++
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FDLSVM 204
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++ G + D K L I +L I+ + P S + + S
Sbjct: 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTP-------SFADMAMLSDD 257
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ + L G
Sbjct: 258 FCQAKM---------PALT----------------------------HFYFDGEELTVST 280
Query: 401 VETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGP---PVPN-----VDVCL 451
A ++ YG TE + + + EM T P P P+ +D
Sbjct: 281 ARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDG 340
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF----HTGDIGEWQP 507
+ + S GE+ V G V GY + T E HTGDIG
Sbjct: 341 KELS-------SGEQ-GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392
Query: 508 DGSL 511
D L
Sbjct: 393 DNIL 396
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 67/311 (21%), Positives = 97/311 (31%), Gaps = 74/311 (23%)
Query: 216 LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK---LTSEDVYV 272
L +N ++YTSG+TG PKGV VS N+ +F L+ +V K L ++
Sbjct: 169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFL 228
Query: 273 SYLPLAHIFDRAIEEVF--ISNGAAIGFWRGDVKL--LLEDIGELKPTIFCAVPRVLDRI 328
A FD I E+F G L L EL T VP
Sbjct: 229 CLASRA--FDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVP------ 280
Query: 329 YSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388
S L+Q +L
Sbjct: 281 -SLLDQTGLVPEDA-------------PHLV----------------------------Y 298
Query: 389 LILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV- 447
L + G + + A ++ YG TE G S +G P+ +
Sbjct: 299 LGVGGEKMTPRTQQIWSSSDRVA-LVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSV 357
Query: 448 -----DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGW--FHTG 500
E V + GE+ ++GS V +GY R D ++G + TG
Sbjct: 358 AHVLAPGSNEHVKK-------GMA-GELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTG 409
Query: 501 DIGEWQPDGSL 511
DI D S+
Sbjct: 410 DIVRMDADSSI 420
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 5e-15
Identities = 51/304 (16%), Positives = 98/304 (32%), Gaps = 79/304 (25%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I+YTSG+TG+PKGV ++ +V+F L + V+++ P + FD ++
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-----LQTGQVFLNQAPFS--FDLSVM 201
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+++ + G + K L + + ++ + P S +
Sbjct: 202 DIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTP-------SFAEMCLMEAS 254
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ L N+K + G
Sbjct: 255 FSESML---------PNMK----------------------------TFLFCGEVLPNEV 277
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
+ A ++ YG TE + ++ G + +
Sbjct: 278 ARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE--VMVDG--WFHTGDIGEWQP 507
P+ GE+ + G +V GY +LT++ M+DG + TGD G +
Sbjct: 338 TIAPD-------GEK-GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-YVE 388
Query: 508 DGSL 511
+G L
Sbjct: 389 NGLL 392
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 28/239 (11%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG-KC 106
R P++ + G + T+ ++Y + V + CG G +
Sbjct: 28 AALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG--STGDRV 85
Query: 107 GIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVE---FIICHSGVSIAFVEEKKIPE 163
I E+++ G VPL G E ++ S + +
Sbjct: 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDD 145
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
+++ + ++ D L L + +
Sbjct: 146 VVQHV--------------------ARRPGESPPSIIEVDL-LDLDAPNGYTFKEDEYPS 184
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+ YTSG+T P GV++S++N+ + + VS+LP H
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM 243
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 35/173 (20%), Positives = 55/173 (31%), Gaps = 44/173 (25%)
Query: 385 GRVRLILSGAAPLTPH-VETFLRVVAC----AHVLQ-GYGLTETCAGTFVSLPNEMSMIG 438
G + ILSG+ + ++ F A V++ Y L E +V+
Sbjct: 311 GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT--VYVATSKPGQPPE 368
Query: 439 TV---------GPPVPNVD------VCLESVPEMEY---DALSSTPR-----GEVCVKGS 475
TV G P + D+ + GE+ V G
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGD 428
Query: 476 TVFSGYYKREDLTKEVMV------------DGWFHTGDIGEWQPDGSLKIIDR 516
V +GY+++ D ++ W TGD G DG + II R
Sbjct: 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 7e-14
Identities = 53/307 (17%), Positives = 106/307 (34%), Gaps = 85/307 (27%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I+YTSG+TG+PKGV +S N+ +F + ++ ++++ P + FD ++
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFP-----VSGGKIFLNQAPFS--FDLSVM 200
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+++ + +G + K+L E++ + ++ + P S + + G
Sbjct: 201 DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTP-------SFVQMCLMDPG 253
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ L + + G
Sbjct: 254 FSQDLL---------PHAD----------------------------TFMFCGEVLPVSV 276
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
+ L A + YG TE + + +S ++ G P+ +D
Sbjct: 277 AKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEG 336
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH-------TGDIGE 504
+ +PE GE+ + G +V GY +LT++ H TGD G
Sbjct: 337 QPLPE-------GEK-GEIVIAGPSVSRGYLGEPELTEKAFFS---HEGQWAYRTGDAG- 384
Query: 505 WQPDGSL 511
+ DG +
Sbjct: 385 FIQDGQI 391
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 33/235 (14%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
DV R+ +PN + ++ + + + TY+++ + ++ G + +
Sbjct: 15 DVVRLRALHSPNKKSC---TFLNKELEETM--TYEQLDQHAKAIAATLQAEGAKPGDRVL 69
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVE---FIICHSGVSIAFVEEKKIPEM 164
+ I C G VP+Y ++ I+ +S I + I +
Sbjct: 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDI 224
T + + + ++L + + K NDI
Sbjct: 130 TADELNTNPKFL-------------------KIPAIALES-IELNRSSSWQPTSIKSNDI 169
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ YTSG+T PKGVMVS+ N++ + + + E + S+LP H
Sbjct: 170 AFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFH-----MNDETIIFSWLPPHH 219
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 30/182 (16%), Positives = 52/182 (28%), Gaps = 56/182 (30%)
Query: 385 GRVRLILSGAAPLTPH-VETFLRVVAC----AHVLQ-GYGLTETCAGTFVSLPNEMSMIG 438
+GA P+ +E F + YGL E P
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTL 348
Query: 439 TV--------------------------GPPVPNVDVCLESVPEMEYDALSSTPR----- 467
T+ G P+ V + D + P
Sbjct: 349 TLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKII---------DPDTLIPCDFDQV 399
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV---------DGWFHTGDIGEWQPDGSLKIIDRKK 518
GE+ V+ ++V GY+ + + T+ + TGD+G + L + R K
Sbjct: 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458
Query: 519 NI 520
++
Sbjct: 459 DL 460
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 4e-08
Identities = 39/294 (13%), Positives = 75/294 (25%), Gaps = 50/294 (17%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHI 280
+ + + GTTG PK V+ + I I+ + ++ +P HI
Sbjct: 91 DSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRP--GRPSGNTLAAIPTGPHI 148
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+E + G D + + + E V + + ++Q ++
Sbjct: 149 VGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTA---TVRKYTHHL---VDQVQNTLM 202
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ + + + I G L
Sbjct: 203 NQDIRFLVTTPPV-------------LRELLKRPEVVLQMKQ---SLAQITLGGTELNLD 246
Query: 401 VETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVC------LE 452
F+ ++ YG T + L S P + +
Sbjct: 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQ 306
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFS------GYYKREDLTKEVMVDGWFHTG 500
+V E RG V V T S +R+ + V G+
Sbjct: 307 TVEYGE--------RGNVIV---THLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-04
Identities = 54/420 (12%), Positives = 114/420 (27%), Gaps = 154/420 (36%)
Query: 23 IGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVW-KTY 81
I P + S D + S R ++ P L ++ V
Sbjct: 209 IDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLN-----VQNAKA 258
Query: 82 KEVYDL------------VIKVVNAIRTC---------GVEERGKCGIYG--VNC----- 113
++L V ++A T + + ++C
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 114 PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE 173
P E P +SI I E ++ T +
Sbjct: 319 PR-----EVLT-----TNPRR----------------LSI-------IAESIRDGLATWD 345
Query: 174 HLKTI----------VSFSKVKP-EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
+ K + S + ++P E R+ ++ L+V+ +P
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LSVFPPSA----------HIPTI--- 390
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+ ++++ D V+ L+E ++ T +P ++
Sbjct: 391 -LLSLIWFDVIKSDVMVVVNKLHK--------YSLVEKQPKEST------ISIPSIYL-- 433
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGEL-KPTIFCAVPRVLDRIYSGLNQKISSGGL 341
++K+ LE+ L + ++D Y+ + + S L
Sbjct: 434 -------------------ELKVKLENEYALHR--------SIVDH-YN-IPKTFDSDDL 464
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI-VFDKVKQSFG-GRVRLILSGAAPLTP 399
+ L Y Y GH H++ +++ +F V F ++ A
Sbjct: 465 IPPYLDQ--YFYSH----IGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 663 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.94 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.21 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.06 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.78 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.71 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.55 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.28 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.7 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 90.67 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 86.68 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 80.43 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-74 Score=639.45 Aligned_cols=516 Identities=22% Similarity=0.288 Sum_probs=397.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCC--CCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 006047 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (663)
Q Consensus 35 ~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n 112 (663)
++|.......++.++|.++++++||++|+++. ++. .+..+++||+||.++++++|++|.+.|+++||+|+|+++|
T Consensus 10 ~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 86 (549)
T 3g7s_A 10 GFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPN 86 (549)
T ss_dssp CCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred CCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 45555556789999999999999999999987 421 2345789999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHH
Q 006047 113 CPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (663)
Q Consensus 113 ~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 192 (663)
++++++++|||+++|++++|+++.++.+++.++|+.++++++|++......+....... .+..++..+..
T Consensus 87 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 87 SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE-------- 156 (549)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS--------
T ss_pred CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999999999988776665544332 34566655432
Q ss_pred hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 006047 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
..++.++...............++++++++|||||||.||||+++|+++.+.+..+...+ ++.++|+++
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~ 225 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIV 225 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEE
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEE
Confidence 234566665443321222222348999999999999999999999999999999888777 889999999
Q ss_pred EcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006047 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (663)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (663)
+++|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++........
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------- 292 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------- 292 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-------------
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-------------
Confidence 99999999999888888999999999876 9999999999999999999999999987754332100
Q ss_pred HhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHh----cC---Cceeeccccccccc
Q 006047 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC---AHVLQGYGLTETCA 424 (663)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~~~ 424 (663)
...+++|.+++||+++++++.+.+.+. ++ ..+++.||+||++.
T Consensus 293 ------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~ 342 (549)
T 3g7s_A 293 ------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACP 342 (549)
T ss_dssp ------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSS
T ss_pred ------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccch
Confidence 011589999999999999999999887 56 89999999999998
Q ss_pred ceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc---cCC--ceec
Q 006047 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM---VDG--WFHT 499 (663)
Q Consensus 425 ~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~g--~~~T 499 (663)
+++...........++|.|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+++.| .+| ||+|
T Consensus 343 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~T 420 (549)
T 3g7s_A 343 MVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRT 420 (549)
T ss_dssp EEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEE
T ss_pred hhhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEcc
Confidence 8777665554556899999999999999955554 45677999999999999999999999999988 677 9999
Q ss_pred CcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHc
Q 006047 500 GDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAEN 576 (663)
Q Consensus 500 GDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~ 576 (663)
||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 421 GDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------- 492 (549)
T 3g7s_A 421 GDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------- 492 (549)
T ss_dssp EEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT-------
T ss_pred CcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc-------
Confidence 999999999999999999999997 8999999999999999999999999997654 57899999876420
Q ss_pred CCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 577 GVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
... ..++|+++++ .+|+.|++|+.|++++.. |+|++||++|++|++++.+.
T Consensus 493 -----------~~~----~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 493 -----------GKV----DEEDIIEWVR-ERISGYKRVREVEFVEEL------PRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -----------TSC----CHHHHHHHHH-TTCC-----CCCCEEEEC------C-------------------
T ss_pred -----------CcC----CHHHHHHHHH-HhccCcccceEEEEeccC------CCCCCcCEeHHHHHHHhhcc
Confidence 000 1234555555 789999999999998665 89999999999999988653
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-74 Score=635.82 Aligned_cols=522 Identities=23% Similarity=0.267 Sum_probs=424.1
Q ss_pred CCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCC
Q 006047 21 PSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100 (663)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv 100 (663)
|....+|++...+..+| ...++.++|.++++++||++|+++. ++. +++||+||.++++++|++|++.|+
T Consensus 3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv 71 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI 71 (536)
T ss_dssp --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence 44556777766444433 3488999999999999999999864 322 679999999999999999999999
Q ss_pred CCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEE
Q 006047 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180 (663)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~ 180 (663)
++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+....... . ..++.
T Consensus 72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~~~ 148 (536)
T 3ni2_A 72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--D-VKVMC 148 (536)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--T-CEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--C-ceEEE
Confidence 99999999999999999999999999999999999999999999999999999999987666554432211 1 23444
Q ss_pred ecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhh
Q 006047 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES 260 (663)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~ 260 (663)
++.... ...+++++...... ..+.....++++++++|||||||.||||++||+++++.+........
T Consensus 149 ~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~- 215 (536)
T 3ni2_A 149 VDSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN- 215 (536)
T ss_dssp SSCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-
T ss_pred ecCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-
Confidence 443211 13456666554332 23344567899999999999999999999999999988776543210
Q ss_pred ccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhc
Q 006047 261 VNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (663)
Q Consensus 261 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 338 (663)
....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------ 289 (536)
T 3ni2_A 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------ 289 (536)
T ss_dssp CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS------
T ss_pred ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc------
Confidence 0125788999999999999999965 6788999999999876 9999999999999999999999999876421
Q ss_pred CChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecc
Q 006047 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGY 417 (663)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~y 417 (663)
... ...++++|.+++||+++++++.+.+++.+ ++++++.|
T Consensus 290 -------------------------------~~~--------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 290 -------------------------------DLD--------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp -------------------------------CGG--------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred -------------------------------ccc--------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 011 11226899999999999999999999888 89999999
Q ss_pred cccccccceeccC----CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-
Q 006047 418 GLTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (663)
Q Consensus 418 G~tE~~~~~~~~~----~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~- 492 (663)
|+||++.+++.+. .......+++|.|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.|
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~ 408 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG--ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCC--cCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence 9999987655432 112234588999999999999993334 455678999999999999999999999999999
Q ss_pred cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHH
Q 006047 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDAL 569 (663)
Q Consensus 493 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 569 (663)
.+|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~- 486 (536)
T 3ni2_A 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS- 486 (536)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-
T ss_pred CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC-
Confidence 7899999999999999999999999999997 8999999999999999999999999997644 5889999987642
Q ss_pred HHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 570 ERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. ..++|+++++ +.|+.|++|++|++++.. |+|++||++|++|+++|+.
T Consensus 487 -----------------~~------~~~~l~~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 487 -----------------QA------TEDEIKQYIS-KQVIFYKRIKRVFFIEAI------PKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp -----------------CC------CHHHHHHHHH-TTSCGGGCCSEEEECSCC------CBCTTSCBCHHHHHTC---
T ss_pred -----------------CC------CHHHHHHHHH-HhccCCccccEEEEEecC------CCCCCCCeeHHHHHHHhcc
Confidence 00 0134555665 789999999999999765 8999999999999998764
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-74 Score=634.97 Aligned_cols=504 Identities=17% Similarity=0.203 Sum_probs=413.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
|+++|++++|+++.++.+++.++++.++++++|+++.... ..........+.++.++..+....
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111111133444554433110
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
+.++.... ..........++++++++|||||||.||||+++|+++++.+......+ +++++|++++.+|++
T Consensus 163 ---~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 163 ---FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp ---SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred ---hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 11111111 111123445779999999999999999999999999999988877776 788999999999999
Q ss_pred hHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++.....
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 293 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------- 293 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------
Confidence 9999874 7788999999999876 8999999999999999999999999987643221
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
...++++|.+++||+++++++.+++++.+++++++.||+||++..+.........
T Consensus 294 -------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 294 -------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp -------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 0112589999999999999999999988899999999999965433322211122
Q ss_pred ccCccCccccC-eEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 436 MIGTVGPPVPN-VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 436 ~~~~~G~p~~~-~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...++|+|+++ .+++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 5899999 6654 55677999999999999999999999999999 699999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++. .+
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~------------------~~-- 484 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA------------------PK-- 484 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC------------------CC--
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC------------------CC--
Confidence 9999999996 8999999999999999999999999997654 5889999877421 01
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHhcc
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSE 656 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~~ 656 (663)
.++|++++++..|+.|++|+.|++++.. |+|++||++|++|+++|.+.++++|++
T Consensus 485 -----~~~l~~~l~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 485 -----AAELKAFLRERGLAAYKIPDRVEFVESF------PQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp -----HHHHHHHHHHTTCCGGGSCSEEEECSSC------CBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHhCCCCcccCCCEEEEeccC------CCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 2445566663349999999999999665 899999999999999999999999973
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-73 Score=634.01 Aligned_cols=509 Identities=18% Similarity=0.178 Sum_probs=402.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
..++.++++|+++|+.+||++|+++. +. .+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34556669999999999999999986 43 234478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh--hhHhhcCCCcCCCC-cEEEEecCCChhhHHHHhhcCc
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGL 197 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~--~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~ 197 (663)
|||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+....... +.+ ..++.++.... .
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL----------E 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------T
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------c
Confidence 99999999999999999999999999999999999988754 3333322211 222 34555543211 1
Q ss_pred EEEeHHHHHhcccccCCCC---CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEc
Q 006047 198 AVYSWDEFLQLGENKQFDL---PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (663)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~ 274 (663)
.+.++.+.+.........+ ....++++++++|||||||.||+|.++|.+++..+......+ ++.+++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence 2456666665443321111 246789999999999999999999999999888776655444 78899999999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEEEEc---CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 275 LPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
.|++|..+... ++.++..|+++++.+ .++..+++.|+++++|+++++|+++..+.+..
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 334 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------ 334 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence 99999888765 677899999998874 28999999999999999999999999876410
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccC
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (663)
. ....+++||.+++||+++++++.+++.+.+|+++++.||+||++..+....
T Consensus 335 --------------------~--------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 335 --------------------L--------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp --------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred --------------------c--------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 0 011226899999999999999999999989999999999999987666554
Q ss_pred CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc-----CcccccccCChhhhhccccCCceecCcEEEE
Q 006047 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-----STVFSGYYKREDLTKEVMVDGWFHTGDIGEW 505 (663)
Q Consensus 431 ~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g-----~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 505 (663)
.. ....+++|+|+|+++++|+| +++. +++.|+.|||+|+| +.++.||+++++.+++.|.+|||+|||+|++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 33 33458999999999999999 6665 45667999999997 7899999999999999999999999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 463 d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~------------- 528 (580)
T 3etc_A 463 DEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT------------- 528 (580)
T ss_dssp CTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-------------
T ss_pred CCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC-------------
Confidence 999999999999999997 7999999999999999999999999997754 58899999887430
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 583 KSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. +.+.++|+++++ ..|++|++|+.|++++.. |+|++|||+|++|++++++
T Consensus 529 ----~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 ----PS----DSLKNELQDHVK-NVTAPYKYPRIIEFVPEL------PKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ----CC----HHHHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred ----CC----HHHHHHHHHHHH-hhCCCccCCeEEEEeCCC------CCCCCcCCcHHHHHhHhhc
Confidence 11 223455666666 679999999999999765 8999999999999998864
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-72 Score=619.29 Aligned_cols=489 Identities=19% Similarity=0.244 Sum_probs=401.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
|+|+.++|.++++++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 222 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEE--cCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV--EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|+++|++++|+++.++.+++.++++.++++++|+ +......+..... .++ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eE---------------------
Confidence 9999999999999999999999999999999999 6654443312221 111 22
Q ss_pred eHHHHHhccc----ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccC--CCCcEEEEc
Q 006047 201 SWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSY 274 (663)
Q Consensus 201 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 274 (663)
.++++..... ..........++++++++|||||||.||||.++|+++.+.+..+...+ ++ .+++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 2222222110 111112345679999999999999999999999999999888876655 56 789999999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006047 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (663)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (663)
+|++|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+.......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------- 267 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS--------------- 267 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC---------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc---------------
Confidence 99999999854 7888999999999876 899999999999999999999999998753211000
Q ss_pred hhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCC
Q 006047 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (663)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~ 432 (663)
...++++|.+++||+++++++.+.+++.++..+++.||+||++.. ....
T Consensus 268 ----------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~-~~~~-- 316 (504)
T 1t5h_X 268 ----------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS-LYMR-- 316 (504)
T ss_dssp ----------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEE-EEEE--
T ss_pred ----------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccc-cccc--
Confidence 001258999999999999999999999999999999999999432 2222
Q ss_pred CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEc-cCcccccccCChhhhhccccCCceecCcEEEEcCCCcE
Q 006047 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSL 511 (663)
Q Consensus 433 ~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l 511 (663)
....+++|.|.+++++++++..++...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1234789999999999999933333356778899999999 99999999999999999999999999999999999999
Q ss_pred EEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcC
Q 006047 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCEN 588 (663)
Q Consensus 512 ~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (663)
+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++. . .+
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~----------~-------~~ 457 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE----------T-------LS 457 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC----------C-------CC
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc----------C-------cC
Confidence 999999999996 8999999999999999999999999997754 5899999987642 0 00
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 589 PKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 589 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
.++|++++++++|+.|++|++|++++.. |+|++||++|++|+++|+
T Consensus 458 -------~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 -------ADALDTFCRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp -------HHHHHHHHHTSSCCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHC
T ss_pred -------HHHHHHHHhhccCcccccceEEEEhhhC------CCCCCCCEeHHHHHHHhc
Confidence 2455666662389999999999999765 899999999999998874
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-72 Score=622.08 Aligned_cols=499 Identities=23% Similarity=0.304 Sum_probs=409.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHH
Q 006047 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (663)
Q Consensus 39 ~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (663)
..+...|+.++|.++++.+|+++|+++. +.. +++||+||.++++++|++|.+.|+++||+|+|+++|++++++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 83 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC 83 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHH
Confidence 3456789999999999999999999875 322 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 119 ~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
++|||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.+..
T Consensus 84 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------- 147 (517)
T 3r44_A 84 LFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG--------------- 147 (517)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------
T ss_pred HHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------
Confidence 99999999999999999999999999999999999999987765544332211 11111111110
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
..++.+.+.... ...+.....++++++++|||||||.||||++||+++.+.+......+ +++++|++++.+|++
T Consensus 148 ~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 221 (517)
T 3r44_A 148 ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMF 221 (517)
T ss_dssp HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTT
T ss_pred cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchH
Confidence 011233333222 12334456789999999999999999999999999999998887777 789999999999999
Q ss_pred hHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 279 ~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....
T Consensus 222 ~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 278 (517)
T 3r44_A 222 HVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF----------------------- 278 (517)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-----------------------
T ss_pred HHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----------------------
Confidence 99999876666559999998876 999999999999999999999999988653211
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-ccc
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSM 436 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~ 436 (663)
....++++|.+++||+++++++.+.+.+. ++++++.||+||++..++...... ...
T Consensus 279 ----------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 335 (517)
T 3r44_A 279 ----------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRK 335 (517)
T ss_dssp ----------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTT
T ss_pred ----------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCcccccc
Confidence 11223689999999999999999999886 999999999999988666544332 344
Q ss_pred cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeee
Q 006047 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 437 ~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
.+++|.|+++++++++| +++...+ .| .|||+|+|+.++.||+++++.+++.|.+|||+|||+|++++||+|+++||
T Consensus 336 ~~~~G~~~~~~~~~i~d-~~~~~~~--~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR 411 (517)
T 3r44_A 336 AGSAGRATMFTDVAVRG-DDGVIRE--HG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDR 411 (517)
T ss_dssp TTCCBEECTTEEEEEEC-TTSCEES--SE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEC
T ss_pred CCCCCcCCCCeEEEEEC-CCCCCCC--CC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecC
Confidence 58899999999999999 6665443 44 79999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 517 KKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 517 ~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++++|+..... .+
T Consensus 412 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~------------------~~----- 467 (517)
T 3r44_A 412 LKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE------------------VS----- 467 (517)
T ss_dssp GGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT------------------CC-----
T ss_pred CcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC------------------CC-----
Confidence 9999997 8999999999999999999999999997654 4677777433311 01
Q ss_pred HHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 594 FILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|+++|.+.
T Consensus 468 --~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 468 --EQQIVEYCG-TRLARYKLPKKVIFAEAI------PRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp --HHHHHHHHH-HHSCGGGSCSEEEECSCC------CBCTTCCBCHHHHHHHHGGG
T ss_pred --HHHHHHHHH-HhCCCCCCCCEEEEECCC------CCCCCcCccHHHHHHHHHhh
Confidence 134555555 679999999999999665 89999999999999998764
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-73 Score=628.65 Aligned_cols=501 Identities=22% Similarity=0.286 Sum_probs=385.1
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|.++++.+||++|+++. +. ...+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 58999999999999999999864 21 22378999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++.++|+.++++++|++.+....+...... .+.++.++.++..... ...++.
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~ 161 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAPE----------GYLAYE 161 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCCT----------TCEEHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCCccEEEEecCCCCc----------ccccHH
Confidence 99999999999999999999999999999999998776654443322 2345566665543210 123455
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhh--hhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV--KCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+++..... .....++++++++|||||||.||||++||+++++..... ...+ +++++|++++.+|++|.+
T Consensus 162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 55433211 134567899999999999999999999999998776552 2233 678999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 282 DRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 289 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------- 289 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----------------------
Confidence 98777788999999999864 89999999999999999999999999876543211
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC------
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE------ 433 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~------ 433 (663)
..++++|.+++||+++++++.+.+ +.+++++++.||+||++.+++......
T Consensus 290 ----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 346 (541)
T 1v25_A 290 ----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS 346 (541)
T ss_dssp ----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred ----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccC
Confidence 112589999999999999999999 567999999999999988766554321
Q ss_pred ----ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc-CCceecCcEEEEcCC
Q 006047 434 ----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPD 508 (663)
Q Consensus 434 ----~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~~~ 508 (663)
.....++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.+++.|. +|||+|||+|++|+|
T Consensus 347 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d 425 (541)
T 1v25_A 347 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425 (541)
T ss_dssp HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred ccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence 01247899999999999999 777766654457999999999999999999999999994 999999999999999
Q ss_pred CcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhh
Q 006047 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSL 585 (663)
Q Consensus 509 G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 585 (663)
|+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.....
T Consensus 426 G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~---------------- 488 (541)
T 1v25_A 426 GYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP---------------- 488 (541)
T ss_dssp CCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------
T ss_pred ceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCC----------------
Confidence 999999999999996 8999999999999999999999999997654 58889988762110
Q ss_pred hcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 586 CENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 586 ~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
-.+++++++++..|+.|++|+.|++++.. |+|++||++|++|+++|.+
T Consensus 489 ---------~~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 489 ---------TPEELNEHLLKAGFAKWQLPDAYVFAEEI------PRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ---------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred ---------CHHHHHHHHHhccCccccCCcEEEEeCCC------CCCCccCeeHHHHHHHHHH
Confidence 01334445552389999999999988665 8999999999999998754
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-73 Score=630.59 Aligned_cols=520 Identities=20% Similarity=0.266 Sum_probs=334.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhh
Q 006047 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (663)
Q Consensus 37 ~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~ 116 (663)
|..+....|+.++|.++++++|+++|++... ++..+ +++||+||.++++++|++|++.|+++||+|+|+++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4444556899999999999999999986321 22111 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 117 ~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
++++|||+++|++++|+++.++.+++.++++.++++++|++++....+....... +.+..++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhC-CCcceEEEEcCCccc---------
Confidence 9999999999999999999999999999999999999999998776655443222 455677766543211
Q ss_pred cEEEeHHHHHhccccc-----CC-CCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcE
Q 006047 197 LAVYSWDEFLQLGENK-----QF-DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (663)
....++.+++...... .. +.....++++++++|||||||.||||+++|++++..+......+ ...++.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 1234556665443221 11 11223457899999999999999999999999998877655431 1125778999
Q ss_pred EEEcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 006047 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (663)
Q Consensus 271 ~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (663)
+++.+|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++...
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------- 300 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL---------------- 300 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc----------------
Confidence 9999999999999888888999999999876 99999999999999999999999998865211
Q ss_pred HHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCc-eeecccccccccceec
Q 006047 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTFV 428 (663)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~ 428 (663)
.. ...++++|.+++||+++++++.+.+++.++.. +++.||+||++..++.
T Consensus 301 ---------------------~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 301 ---------------------ID--------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp ---------------------GG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred ---------------------cc--------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 11 11226899999999999999999999988875 8999999999987776
Q ss_pred cCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcC
Q 006047 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQP 507 (663)
Q Consensus 429 ~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~ 507 (663)
...... ..+++|+|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEeCCCC--cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 655443 4489999999999999993334 456678999999999999999999999999999 899999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
||+++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------------- 492 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--------------- 492 (550)
T ss_dssp TCCEEEC-------------------------------------------------------------------------
T ss_pred CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC---------------
Confidence 9999999999999997 8999999999999999999999999997654 57888988776431
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCcccee-EEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIK-AVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLL 652 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ 652 (663)
.-.++|.++++ .++++++.|. .|++++.. |+|++||++|++|++++.+....
T Consensus 493 ---------~~~~~l~~~~~-~~l~~~~~~~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 493 ---------MTEKEIVDYVA-SQVTTAKKLRGGVVFVDEV------PKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ---------CCHHHHHHHHH-HhcccccccCCceEEEeec------CCCCCcceeHHHHHHHHHhhccc
Confidence 01133444444 6777776665 57777665 89999999999999999776543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-72 Score=623.55 Aligned_cols=524 Identities=22% Similarity=0.260 Sum_probs=419.9
Q ss_pred CceeecccccCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCC
Q 006047 24 GPVYRSLFAKDGFPAPIPGMESCWD-VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102 (663)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~ 102 (663)
+.+|++..... ..+...++.+ +|.++++++ |++|+++. ++. +++||+||.++++++|.+|++.|+++
T Consensus 9 ~~~~~~~~~~~----~~p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~ 76 (548)
T 2d1s_A 9 NIVVGPKPFYP----IEEGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVV 76 (548)
T ss_dssp TSEECCCCSSC----CCSSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ceEecCCCCCC----CCCCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCC
Confidence 35666654221 1233468999 899999999 99999863 221 67999999999999999999999999
Q ss_pred CCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEec
Q 006047 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182 (663)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~ 182 (663)
||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++.....+....... +....++.++
T Consensus 77 gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (548)
T 2d1s_A 77 DGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVILD 155 (548)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEETT
T ss_pred CCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999998766554432111 2234555554
Q ss_pred CCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCC------CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhh
Q 006047 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK------KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256 (663)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~ 256 (663)
..... ....+++++.........+.... .++++++++|||||||.||||.+||+++.+.+.....
T Consensus 156 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~ 226 (548)
T 2d1s_A 156 SKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226 (548)
T ss_dssp CSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTC
T ss_pred Ccccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhc
Confidence 32100 01224566654332110111111 2389999999999999999999999999998877655
Q ss_pred hhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHH
Q 006047 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334 (663)
Q Consensus 257 ~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 334 (663)
.+. ..+++++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..+.+...
T Consensus 227 ~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~- 302 (548)
T 2d1s_A 227 PIY--GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL- 302 (548)
T ss_dssp TTT--SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC-
T ss_pred hhh--ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc-
Confidence 410 126788999999999999999876 45566 9999998875 99999999999999999999999998864110
Q ss_pred HHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCce
Q 006047 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHV 413 (663)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v 413 (663)
.. ...++++|.+++||+++++++.+.+++.+ ++.+
T Consensus 303 ------------------------------------~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 338 (548)
T 2d1s_A 303 ------------------------------------LN--------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGV 338 (548)
T ss_dssp ------------------------------------GG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred ------------------------------------cc--------cccccceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence 00 01125899999999999999999999888 6889
Q ss_pred eecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-
Q 006047 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (663)
Q Consensus 414 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~- 492 (663)
++.||+||++..++..... ....+++|+|+|+++++|+|.+++ .+++.|+.|||+++|++++.||+++++.+.+.|
T Consensus 339 ~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 415 (548)
T 2d1s_A 339 RQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELID 415 (548)
T ss_dssp EEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred eeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhccc
Confidence 9999999998877664433 234589999999999999984344 455678999999999999999999999999999
Q ss_pred cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHH
Q 006047 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDAL 569 (663)
Q Consensus 493 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 569 (663)
.+|||+|||+|++|+||+++++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++.
T Consensus 416 ~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~- 493 (548)
T 2d1s_A 416 EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK- 493 (548)
T ss_dssp TTSCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-
T ss_pred CCcEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC-
Confidence 7999999999999999999999999999997 8999999999999999999999999997654 5889999987632
Q ss_pred HHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCcccee-EEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 570 ERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIK-AVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
. .+ .++|+++++ .+|+.|+.|+ .|++++.. |+|++||++|++|+++|.+
T Consensus 494 ---------~-------~~-------~~~l~~~~~-~~l~~~~~p~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 494 ---------N-------MT-------EKEVMDYVA-SQVSNAKRLRGGVRFVDEV------PKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp ---------C-------CC-------HHHHHHHHH-TTSCGGGSCTTCEEECSSC------CBCTTSCBCHHHHHHHHHS
T ss_pred ---------C-------CC-------HHHHHHHHH-HhccccccccccEEEccCC------CCCCcchhHHHHHHHHHhh
Confidence 0 00 234555665 7899999999 89998665 8999999999999999987
Q ss_pred HHHH
Q 006047 649 TFLL 652 (663)
Q Consensus 649 ~~~~ 652 (663)
.+++
T Consensus 544 ~i~~ 547 (548)
T 2d1s_A 544 PVAK 547 (548)
T ss_dssp CC--
T ss_pred hhhc
Confidence 6654
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-72 Score=626.05 Aligned_cols=500 Identities=15% Similarity=0.188 Sum_probs=335.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999986531 111111111234455665554311
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
...+.++...............++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444433322233456789999999999999999999999999999999988877 889999999999999
Q ss_pred hHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 302 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------- 302 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------
Confidence 9999875 6778999999999876 9999999999999999999999999987643211
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
..++ +++|.+++||+++++++.+.+++.+++++++.||+||++..+.........
T Consensus 303 -----------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 303 -----------------KDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -----------------HHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -----------------cccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 0111 589999999999999999999998999999999999988655444333333
Q ss_pred ccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 436 ~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...++|.|+ ++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++++||+|++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 347899996 899999999 6665 45677999999999999999999999999999 799999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+...
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------------------- 492 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL--------------------- 492 (544)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC---------------------
Confidence 9999999996 8999999999999999999999999997654 57888888765320
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
..+.+++++++..|+.|++|+.|++++.. |+|++||++|++|++++.+
T Consensus 493 ----~~~~l~~~~~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 493 ----KAVVLRRHLMELGIAQYKLPDQIKLIESL------PLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------
T ss_pred ----CHHHHHHHHHhCCCCcccCCcEEEEeccC------CCCCCCCCcHHHHHHHHhh
Confidence 11334445553379999999999998665 8999999999999998865
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-71 Score=618.56 Aligned_cols=510 Identities=17% Similarity=0.179 Sum_probs=419.4
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCch
Q 006047 41 PGMESCWDVFRMAVER-----NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCP 114 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~-----~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~ 114 (663)
..++++.++|.++++. +||++|+++. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456678999999999 9999999976 422 2347899999999999999999999 9999999999999999
Q ss_pred hhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhh
Q 006047 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (663)
Q Consensus 115 ~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 194 (663)
++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+...... .+.++.++.++.....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 182 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE-CPSLRIKLLVSEKSCD------- 182 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGG-CTTCCEEEEESSSCCT-------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhc-CCceeEEEEecccCcc-------
Confidence 99999999999999999999999999999999999999999998877665443322 2445566666542110
Q ss_pred cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHH--HHhhhhhhhhhccccCCCCcEEE
Q 006047 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT--FIAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
...++++++..... ........++++++++|||||||.||||.++|+ ++. ..... ..+ ++.++|+++
T Consensus 183 ---~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~ 251 (570)
T 3c5e_A 183 ---GWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMW 251 (570)
T ss_dssp ---TSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred ---ccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEE
Confidence 12356666654322 122334578999999999999999999999999 554 33332 333 688999999
Q ss_pred EcCChhhHHHHHH-HHHHHHcCcEEEEEc---CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 006047 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (663)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (663)
+.+|++|..++.. ++.++..|+++++.+ .++..+++.|+++++|+++++|+++..+.+. ..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---~~------------ 316 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---DL------------ 316 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS---CT------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc---cc------------
Confidence 9999999999875 778899999999886 3899999999999999999999999987641 00
Q ss_pred HHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceec
Q 006047 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (663)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 428 (663)
....++++|.+++||+++++++.+.+++.+++++++.||+||++..+..
T Consensus 317 -------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 317 -------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp -------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred -------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 0011258999999999999999999998889999999999999876655
Q ss_pred cCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEc-----cCcccccccCChhhhhccccCCceecCcEE
Q 006047 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-----GSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503 (663)
Q Consensus 429 ~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~-----g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg 503 (663)
.... ....+++|+|+++++++|+| +++. +++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4332 23458999999999999999 6665 4567899999999 999999999999999999999999999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNG 580 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 580 (663)
++|+||+|++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 442 ~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----------- 509 (570)
T 3c5e_A 442 IKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL----------- 509 (570)
T ss_dssp EECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT-----------
T ss_pred EEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc-----------
Confidence 99999999999999999996 8999999999999999999999999997654 57899999876420
Q ss_pred ChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 581 DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
....+.+.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++.+.+..
T Consensus 510 --------~~~~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 510 --------SHDPEQLTKELQQHVK-SVTAPYKYPRKIEFVLNL------PKTVTGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp --------TSCHHHHHHHHHHHHH-HHSCGGGSCSEEEEESCC------CBCTTCCBCHHHHHHHHTC--
T ss_pred --------CcchHHHHHHHHHHHH-hhCccccCCcEEEEeccC------CCCCCcCCcHHHHHHHHHhhh
Confidence 0011234556667776 689999999999999765 899999999999999875543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=630.64 Aligned_cols=521 Identities=15% Similarity=0.215 Sum_probs=420.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 356889999999999999999986 33334458899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh---------hHhhcCCCcC-CCCcEEEEecCCChhhHHHH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTT-EHLKTIVSFSKVKPEQREEI 192 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~ 192 (663)
|+++|++++|+++.++.+++.++|++++++++|+++.... .+.+...... ..+..+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999999999876421 1222221110 23566777653211000
Q ss_pred hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHh-hhhhhhhhccccCCCCcEE
Q 006047 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA-GVKCLLESVNEKLTSEDVY 271 (663)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~-~~~~~~~~~~~~~~~~d~~ 271 (663)
........|++++..... ........++++++++|||||||.||||+++|++++..+. .....+ +++++|++
T Consensus 229 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 301 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY 301 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred -ccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 000113567777654322 1233445679999999999999999999999999887664 334445 78899999
Q ss_pred EEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 272 ~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
++..|++|..++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 371 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------- 371 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc----------
Confidence 99999999999854 7889999999999863 7899999999999999999999999886421110
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeeccccccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~ 422 (663)
.+...+++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 372 ---------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 372 ---------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp ---------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred ---------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 00112368999999999999999999998888 899999999999
Q ss_pred ccceeccCCC-CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cCCc
Q 006047 423 CAGTFVSLPN-EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGW 496 (663)
Q Consensus 423 ~~~~~~~~~~-~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~ 496 (663)
++.++..... .....+++|+|+++++++|+| +++.. ++.|+.|||+|+| |.++.||+++++.+.+.| .+||
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~--v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP--QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB--CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCC--cCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 8766655432 233458999999999999999 66654 4567899999999 789999999999887765 3899
Q ss_pred eecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHH
Q 006047 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWA 573 (663)
Q Consensus 497 ~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~ 573 (663)
|+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++.
T Consensus 496 y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~----- 569 (652)
T 1pg4_A 496 YFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----- 569 (652)
T ss_dssp EEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-----
T ss_pred EECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCC-----
Confidence 999999999999999999999999997 7999999999999999999999999997654 5899999988642
Q ss_pred HHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 574 AENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
. ..++ +.++|+++++ ..|++|++|+.|++++.. |+|++||++|++|++++...++
T Consensus 570 -----~-------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~ 624 (652)
T 1pg4_A 570 -----E-------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDTS 624 (652)
T ss_dssp -----C-------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC--
T ss_pred -----C-------CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCCccchHHHHHHHHhCCCC
Confidence 0 1122 3445556666 679999999999999765 8999999999999999987543
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-72 Score=614.08 Aligned_cols=491 Identities=22% Similarity=0.289 Sum_probs=402.4
Q ss_pred HHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcC
Q 006047 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127 (663)
Q Consensus 48 ~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 127 (663)
++|.++++++|+++|+.... ++. +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AAG----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 57899999999999998651 121 679999999999999999999999999999999999999999999999999
Q ss_pred CeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHh
Q 006047 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ 207 (663)
Q Consensus 128 ~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (663)
++++|+++.++.+++.++++.++++++|++......+....... . ..++.+..... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999976544332222111 0 13333332211 01111111
Q ss_pred cccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-H
Q 006047 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-E 286 (663)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~ 286 (663)
.. ..........++++++++|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112233456789999999999999999999999999999999888777 7899999999999999999765 6
Q ss_pred HHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCC
Q 006047 287 EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (663)
Q Consensus 287 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (663)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..++....
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 778999999988876 9999999998 89999999999998764210
Q ss_pred CcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCcccc
Q 006047 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445 (663)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~ 445 (663)
.. ....+++|.+++||+++++++.+.+.+.++.++++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 00 01125899999999999999999999989999999999999987654333 23334588999999
Q ss_pred CeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccceeecC
Q 006047 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524 (663)
Q Consensus 446 ~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~ 524 (663)
+++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||+|+++||.||+|++
T Consensus 328 ~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTDPETG--KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEECTTTC--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEECCCC--CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 999999994444 456678999999999999999999999999999 5999999999999999999999999999997
Q ss_pred CCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHH
Q 006047 525 QGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601 (663)
Q Consensus 525 ~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 601 (663)
+|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++. ... .+++++
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~------------------~~~------~~~l~~ 460 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA------------------TID------EAQVLH 460 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC------------------CCC------HHHHHH
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC------------------CCC------HHHHHH
Confidence 8999999999999999999999999987654 5789999987642 000 134555
Q ss_pred HHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 602 VAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 602 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+++ ..|+.|++|+.|++++.. |+|++||++|++|+++|++
T Consensus 461 ~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 461 GLD-GQLAKFKMPKKVIFVDDL------PRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp HHB-TTBCGGGCCSEEEEESCC------CBCTTSCBCHHHHHHHTTT
T ss_pred HHH-hhcccCCCCCEEEEECCC------CCCcccceeHHHHHHHHHH
Confidence 555 789999999999999765 8999999999999998865
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-71 Score=625.92 Aligned_cols=530 Identities=18% Similarity=0.184 Sum_probs=417.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
.+++.++|.++++++||++|+++. +...+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 367899999999999999999986 333344588999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh---------hHhhcCCCcCCCCcEEEEecCCChhhHHHH
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 192 (663)
||+++|++++|+++.++.+++.++|++++++++|+++.... .+.+.... .+.++.+++++.......
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~--- 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRE-TPGVRHVLVYRKTNNPSV--- 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTS-CTTCCEEEEECSSCCSSC---
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHh-CCCCceEEEEecCCCCcc---
Confidence 99999999999999999999999999999999999876532 22222222 245667777654211000
Q ss_pred hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhh-hhhhhhhccccCCCCcEE
Q 006047 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVY 271 (663)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 271 (663)
.........|.+++..... ..+.....++++++++|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 0001123567777654321 23334557899999999999999999999999998876643 33344 78899999
Q ss_pred EEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 272 ~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
++..|++|..+... ++.+++.|+++++.+. ++..+++.|+++++|+++++|+.++.+.+.....
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------- 377 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY---------- 377 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS----------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc----------
Confidence 99999999999854 7889999999999864 7899999999999999999999998875311000
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeeccccccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~ 422 (663)
.+...+++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 378 ---------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 378 ---------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp ---------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred ---------------------------------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 00112268999999999999999999999887 899999999999
Q ss_pred ccceeccCC--CCccccCccCccccCeEEEEeecC-CCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cC
Q 006047 423 CAGTFVSLP--NEMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VD 494 (663)
Q Consensus 423 ~~~~~~~~~--~~~~~~~~~G~p~~~~~v~iv~~~-~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~ 494 (663)
+..++.... ......+++|.|+++++++|+| + ++..++. .|+.|||+++| |+++.|||++++.+.+.| .+
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 876665543 2233458999999999999999 5 5554432 27899999999 589999999999888776 37
Q ss_pred CceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHH
Q 006047 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALER 571 (663)
Q Consensus 495 g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~ 571 (663)
|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++....
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~ 581 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 581 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence 99999999999999999999999999997 7999999999999999999999999997754 6899999988753100
Q ss_pred HHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 572 WAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
.. . .+..+.+.++|+++++ +.|++|++|+.|++++.. |+|++||++|+.|++++...++
T Consensus 582 ---------~~----~-~~~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~ 640 (663)
T 1ry2_A 582 ---------TA----T-DDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAGESD 640 (663)
T ss_dssp --------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC----
T ss_pred ---------cc----c-chhHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCccCchHHHHHHHHcCCCC
Confidence 00 0 0000123455666666 679999999999999765 8999999999999999876543
Q ss_pred H
Q 006047 652 L 652 (663)
Q Consensus 652 ~ 652 (663)
.
T Consensus 641 ~ 641 (663)
T 1ry2_A 641 Q 641 (663)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-70 Score=606.29 Aligned_cols=487 Identities=18% Similarity=0.232 Sum_probs=408.6
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+|+.++|+++++++|+++|+++. + +++||+||.++++++|++|.+. |+++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999864 2 6799999999999999999985 889999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++.++++.++++++|+++...... .. . .....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~----------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---Q----------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---C----------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---c----------------------ccceecH
Confidence 999999999999999999999999999999999976532111 00 0 1123455
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
.++...............++++++++|||||||.||+|++||+++.+.+......+ ++..++++++.+|++|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 66655443322333345779999999999999999999999999999998887777 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999998864 78999999999999999999999988754110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC----
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---- 433 (663)
.. ...++++|.+++||+++++++.+.+++.+ ++++++.||+||++..++......
T Consensus 254 ------------~~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FS--------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cc--------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 00 01125899999999999999999999988 899999999999987665443221
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc--cCC--ceecCcEEEEcCCC
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTGDIGEWQPDG 509 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~G 509 (663)
.....++|.|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12236799999999999999 6664 55678999999999999999999999999988 344 7999999999 599
Q ss_pred cEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhh
Q 006047 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLC 586 (663)
Q Consensus 510 ~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 586 (663)
+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------ 450 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHE------------------ 450 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCC------------------
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccc------------------
Confidence 99999999999997 8999999999999999999999999987644 5899999987642
Q ss_pred cChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 587 ENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 587 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
......+.+.|+++++ +.|+.|++|+.+++++.. |+|++|||+|++|++.+.+.
T Consensus 451 --~~~~~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~l------P~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 451 --FEKEFQLTSAIKKELA-ASLPAYMIPRKFIYQDHI------QMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp --CSSHHHHHHHHHHHHH-HHSCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHHHH
T ss_pred --ccchhhHHHHHHHHHH-hhCchhhCCeeEEEeccC------CCCCCcCccHHHHHhHHhhh
Confidence 0011234456666666 689999999999998665 89999999999999998764
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-71 Score=613.12 Aligned_cols=492 Identities=20% Similarity=0.249 Sum_probs=326.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...|+.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3478999999999999999999864 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++.++++.++++++|++.+....+...... ...+..++.++.... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS-LGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGG-CSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcc-cCCceEEEEcCCCCc--------------C
Confidence 9999999999999999999999999999999999999887664444422 245666666654211 1
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+.++...............++++++++|||||||.||||.++|+++++.+......+ +++++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 122222111223334566789999999999999999999999999999999888777 889999999999999999
Q ss_pred HHHHHHHHH-HcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 282 DRAIEEVFI-SNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 282 g~~~~~~~l-~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
++...+.++ ..|+++++...++..+++.|+++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 998866654 4455555444599999999999999999999999999875320
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCccccCc
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~ 439 (663)
...++++|.++.+|++ +..+.+.+.+ ++.+++.||+||++.+++....... ..+
T Consensus 268 --------------------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 --------------------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp --------------------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred --------------------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0011579999999987 7777888777 9999999999999987665543322 245
Q ss_pred cCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeec--
Q 006047 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRK-- 517 (663)
Q Consensus 440 ~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~-- 517 (663)
+|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.|.+|||+|||+|++++||++++.||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 6654 556789999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHH
Q 006047 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEF 594 (663)
Q Consensus 518 ~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (663)
+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++|++.++.. .
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~------------------------~ 454 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES------------------------I 454 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC------------------------C
Confidence 999996 8999999999999999999999999997654 57888988776431 0
Q ss_pred HHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 595 ILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 595 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
-.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++++.+.
T Consensus 455 ~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 455 AADALAEFVA-SLIARYKKPKHVVFVEAL------PKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -------------------------------------------------------
T ss_pred CHHHHHHHHH-hhCcccCCCcEEEEecCC------CCCCCCCccHHHHHHHHhhc
Confidence 1234445555 689999999999998665 89999999999999998764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=607.19 Aligned_cols=488 Identities=19% Similarity=0.218 Sum_probs=401.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999865 3 67999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++.++++.++++++|++....... . . ..++... .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~---~-----~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD---L-----P-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC---C-----S-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc---c-----c-cceechh------------------hhh
Confidence 99999999999999999999999999999999986432110 0 0 1111100 112
Q ss_pred HHHhccc-ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 204 EFLQLGE-NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 204 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
++..... ....+.....++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++++|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 2221111 112233455789999999999999999999999999999998887777 7899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 89999999999999999999999988753110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC----
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---- 433 (663)
.. ...++++|.+++||+++++++.+.+.+.+ ++.+++.||+||++..++......
T Consensus 255 ------------~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 00 01125899999999999999999999888 899999999999987765443321
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc----CCceecCcEEEEcCCC
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTGDIGEWQPDG 509 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDlg~~~~~G 509 (663)
.....++|.|.++++++|+| +++. +++.|+.|||+++||+++.||+++++.+++.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346899999999999999 6665 455679999999999999999999999999882 569999999999 799
Q ss_pred cEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhh
Q 006047 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLC 586 (663)
Q Consensus 510 ~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 586 (663)
+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------ 451 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS------------------ 451 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCC------------------
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcc------------------
Confidence 99999999999997 8999999999999999999999999987644 5789999987632
Q ss_pred cChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 587 ENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 587 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.+....+.++|+++++ ..|+.|++|+.+++++.. |+|++||++|++|++.+.+.
T Consensus 452 --~~~~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~l------P~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 452 --FEKEFKLTSAIKKELN-ERLPNYMIPRKFMYQSSI------PMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp --CSSHHHHHHHHHHHHH-TTSCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHC-
T ss_pred --ccchhhhHHHHHHHHH-hhCchhcCCeEEEEeccc------CCCCCcChHHHHHHhhhhhc
Confidence 0011234456667776 799999999999998665 89999999999999998764
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-71 Score=618.47 Aligned_cols=479 Identities=18% Similarity=0.173 Sum_probs=315.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
.+...++.++|.++++++||++|+++. + +++||+||.++++++|++|.++|+++||+|+|+++|+++++++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 141 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA 141 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999864 2 6799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
+|||+++|++++|+++.++.+++.++++.++++++|++......+ .....++..+..
T Consensus 142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~--------------- 198 (570)
T 4gr5_A 142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA--------------- 198 (570)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC-----------------
T ss_pred HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc---------------
Confidence 999999999999999999999999999999999999997654321 111222211110
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
..............++++++++|||||||.||||+++|+++.+.+... ..+ +++++|++++++|++|
T Consensus 199 -------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTS
T ss_pred -------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccH
Confidence 000011122334578999999999999999999999999998766552 222 6789999999999998
Q ss_pred HHHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 280 IFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 280 ~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
..+...++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++.....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------- 324 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA--------------------- 324 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGG---------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhh---------------------
Confidence 7666667889999999999863 8999999999999999999999999886532110
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC--
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (663)
++++|.+++||++++.++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 325 ---------------------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 377 (570)
T 4gr5_A 325 ---------------------------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD 377 (570)
T ss_dssp ---------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred ---------------------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence 15899999999999999888888776 899999999999987665443221
Q ss_pred -ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cC--------CceecCcEE
Q 006047 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD--------GWFHTGDIG 503 (663)
Q Consensus 434 -~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~--------g~~~TGDlg 503 (663)
.....++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+ |||+|||+|
T Consensus 378 ~~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 378 LSGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp TTSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cCCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 12236799999999999999 6654 45668999999999999999999999999988 32 699999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNG 580 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 580 (663)
++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++..+..
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~----------- 522 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA----------- 522 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC-----------
Confidence 99999999999999999997 8999999999999999999999999997644 57889988765320
Q ss_pred ChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 581 DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
....++|+++++ ..|+.|++|+.|++++.. |+|++|||+|++|++.
T Consensus 523 ------------~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 523 ------------PPDAAELRRHVA-EALPAYMVPVECVPVDEL------PRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------
T ss_pred ------------CcCHHHHHHHHH-hhCccccCCcEEEEcccC------CCCCCcCcchHhhhcc
Confidence 011234555555 689999999999988665 8999999999999864
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-70 Score=602.39 Aligned_cols=501 Identities=18% Similarity=0.234 Sum_probs=398.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
..++++.++|.++++ +|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 345669999999999 9999999853 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCC-cEEEEecCCChhhHHHHhhcCcEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
|||+++|++++|+++.++.+++.++|+.++++++|++......+....... ... ..++.++..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999987665444332111 122 344444432110 0001
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHH-HHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
..++++...... ........++++++++|||||||.||+|.+||+++ .+........+ ++.++|++++.+|++
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred cchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence 245665543221 22233457899999999999999999999999999 55555544334 678999999999999
Q ss_pred hHHHHHH-HHHHHHcCcEEEEEc-C-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI-EEVFISNGAAIGFWR-G-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. ++.++..|+++++.+ . ++..+++.++++++|+++++|+++..++.....
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------- 294 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--------------------- 294 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC---------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc---------------------
Confidence 9999876 567899999999873 3 899999999999999999999999887541100
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
.. . ...++|.+++||+++++++.+.+++.+++++++.||+||++.++....... .
T Consensus 295 ------------~~-~-----------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 295 ------------PA-R-----------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp ------------CC-G-----------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred ------------cc-c-----------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 00 0 003799999999999999999999988999999999999977665554433 3
Q ss_pred ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEee
Q 006047 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 436 ~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
..+++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++++||+|++.|
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~G 426 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAG 426 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred ccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeC
Confidence 348899999999999999 6665 4567899999999999999999999999999999999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
|.||+|++ +|++|+|.|||++|.+||+|.+|+|++... .+.++|+|++.++. . ..+
T Consensus 427 R~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~----------~-------~~~---- 484 (529)
T 2v7b_A 427 RSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF----------A-------PSE---- 484 (529)
T ss_dssp EGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------C-------CCH----
T ss_pred ccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------C-------cch----
Confidence 99999997 899999999999999999999999999732 25789999987632 0 011
Q ss_pred HHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 594 FILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
...++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++
T Consensus 485 ~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 485 ILAEELKAFVK-DRLAPHKYPRDIVFVDDL------PKTATGKIQRFKLRE 528 (529)
T ss_dssp HHHHHHHHHHH-TTSCTTTSCSEEEEESCC------CBCTTSCBCHHHHHC
T ss_pred hHHHHHHHHHH-hhcchhhCCeEEEEeccC------CCCCccchhHHhHhh
Confidence 12345666666 799999999999999765 899999999999986
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-69 Score=609.38 Aligned_cols=502 Identities=16% Similarity=0.202 Sum_probs=414.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 34789999999988 999999864 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCc
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 197 (663)
||+++|++++|+++.++.+++.++++.+++++++++..... ............+..+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999987541 111111111134445555443321
Q ss_pred EEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh
Q 006047 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (663)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 277 (663)
..+.+...... .........+++++|++|||||||.||||+++|+++.+.+......+ ++.+++++++++|+
T Consensus 163 --~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 12333333221 12333455789999999999999999999999999999999888877 78999999999999
Q ss_pred hhHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 006047 278 AHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (663)
Q Consensus 278 ~~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
+|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+.+..+++........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------- 298 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR---------------- 298 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence 99999875 7788999999999876 8999999999999999999999999987654322110
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCc
Q 006047 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (663)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (663)
..++++|.+++||+++++++.+.+.+.+++++++.||+||++..+........
T Consensus 299 ---------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 299 ---------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp ---------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred ---------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 01158999999999999999999999899999999999999865554433322
Q ss_pred cccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEE
Q 006047 435 SMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLK 512 (663)
Q Consensus 435 ~~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~ 512 (663)
....++|.|+ ++++++|+| +++. +++.|+.|||+|+|+++++||+++++.|++.| .++||+|||+|++++||+|+
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3346789997 788999999 6664 55677999999999999999999999999999 78999999999999999999
Q ss_pred EeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcCh
Q 006047 513 IIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENP 589 (663)
Q Consensus 513 ~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (663)
++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|++++.+.. .
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~-- 487 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------R-- 487 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------C--
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------C--
Confidence 99999999997 8999999999999999999999999987543 5888998877521 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHH
Q 006047 590 KAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLL 652 (663)
Q Consensus 590 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ 652 (663)
.+++++++++..|+.|++|..+++++.. |+|++||++|++|++.+.+....
T Consensus 488 ------~~~l~~~l~~~~lp~~~vP~~~~~v~~l------P~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 488 ------AVQVRRFLREQGIAEFKLPDRVECVDSL------PLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp ------HHHHHHHHHTTTCCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhCCCccccCCcEEEEeccc------CCCCCCCCcHHHHHHHHhccccc
Confidence 1345555553379999999999999665 89999999999999998776544
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-70 Score=603.54 Aligned_cols=493 Identities=18% Similarity=0.155 Sum_probs=396.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+.++.++|+++++++|+++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++.++++.++++++|++++....+ .. .....+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~----------------------~~~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EG----------------------ISLVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TT----------------------SEEEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------cc----------------------Ccccch
Confidence 999999999999999999999999999999999987643211 00 112233
Q ss_pred HHHHhccc--ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 203 DEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.++..... ..........++++++++|||||||.||||++||+++++.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 33322111 112233456789999999999999999999999999998877665431 1267889999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888878889999999998764 88999999999999999999999987653100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC--
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (663)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++......
T Consensus 258 --------------~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 00 01125899999999999999999998887 899999999999987665443221
Q ss_pred --ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc----cCCceecCcEEEEcC
Q 006047 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTGDIGEWQP 507 (663)
Q Consensus 434 --~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----~~g~~~TGDlg~~~~ 507 (663)
.....++|+|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+++.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12246899999999999999 6665 45667999999999999999999999999987 357999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC----CeEEEEEecChHHHHHHHHHcCCCCChh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE----SFLVAIVNPNKDALERWAAENGVNGDFK 583 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 583 (663)
||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|++.++... .
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~----------~-- 459 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE----------R-- 459 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG----------G--
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc----------c--
Confidence 9999999999999997 8999999999999999999999999986532 578999998874310 0
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
.+. ...+.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++++.++-
T Consensus 460 ---~~~--~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 460 ---FDR--ELELTKAIKASVK-DHMMSYMMPSKFLYRDSL------PLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp ---CSS--HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSC------CBCTTSSBCHHHHHHHTC---
T ss_pred ---ccc--chhhHHHHHHHHH-hhCccccCCeEEEEeccc------CCCCCcCccHHHHhhhhhcCC
Confidence 000 1234566777777 789999999999998665 899999999999999987653
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-69 Score=603.52 Aligned_cols=476 Identities=20% Similarity=0.258 Sum_probs=392.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44578999999999999999999864 2 67999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|+++.++.+++.++++.++++++|++......+..... ...+..+....
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT--------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST---------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh---------------
Confidence 9999999999999999999999999999999999998865544322211 11233322110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
+ ... ..........++++++++|||||||.||||++||+++.+.+......+ ++.++|++++++|++|.
T Consensus 167 ----~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 235 (563)
T 1amu_A 167 ----I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD 235 (563)
T ss_dssp ----T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred ----h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence 0 000 011112344678999999999999999999999999998888776666 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
.++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 236 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 290 (563)
T 1amu_A 236 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------- 290 (563)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------
T ss_pred HHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------
Confidence 888778889999999998764 789999999999999999999988765210
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC--c
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--M 434 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~ 434 (663)
..+++|.+++||+++++++.+.+.+ .+.+++.||+||++..++...... .
T Consensus 291 --------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~ 342 (563)
T 1amu_A 291 --------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI 342 (563)
T ss_dssp --------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred --------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccC
Confidence 0157999999999999999999876 488999999999987655443221 2
Q ss_pred cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc-------CCceecCcEEEEcC
Q 006047 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGDIGEWQP 507 (663)
Q Consensus 435 ~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 507 (663)
....++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.|++.|. ++||+|||+|++|+
T Consensus 343 ~~~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~ 419 (563)
T 1amu_A 343 GHSVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 419 (563)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CCCCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC
Confidence 2346899999999999999 6665 456679999999999999999999999998883 35999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++..+.
T Consensus 420 dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------------- 482 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI---------------- 482 (563)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC----------------
T ss_pred CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC----------------
Confidence 9999999999999997 8999999999999999999999999997654 5789999876421
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
. .++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++.+
T Consensus 483 --~--------~~~l~~~l~-~~L~~y~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 483 --P--------LEQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp --C--------HHHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCCCC
T ss_pred --C--------HHHHHHHHH-hhCchhhCCcEEEEeccc------CCCCCcChhHHhcCCcc
Confidence 1 134555565 689999999999999765 89999999999998754
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-69 Score=609.62 Aligned_cols=473 Identities=18% Similarity=0.159 Sum_probs=384.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
....++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578999999999999999999865 3 67999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|++|.++.+++.++++.++++++++++...... .....+
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~---------------------- 144 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV---------------------- 144 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE----------------------
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee----------------------
Confidence 99999999999999999999999999999999999766432211 011111
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.+.... ........+...+++++|++|||||||.||||+++|+++.+.+.. ...+ .+.+++++++.+|++|.
T Consensus 145 ~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~ 216 (620)
T 4dg8_A 145 PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFD 216 (620)
T ss_dssp EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTST
T ss_pred eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHH
Confidence 000000 001112233456899999999999999999999999999887765 3334 68899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
.++..++.+++.|+++++.+. ++..+.+.|+++++|+++++|+++..+++...
T Consensus 217 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------ 272 (620)
T 4dg8_A 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------ 272 (620)
T ss_dssp HHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------
T ss_pred HHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------
Confidence 998888899999999998752 89999999999999999999999998764210
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCC---C
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN---E 433 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~---~ 433 (663)
..++++|.+++||+++++++.+.+.+.+ ++++++.||+||++.+++..... .
T Consensus 273 ------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 328 (620)
T 4dg8_A 273 ------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328 (620)
T ss_dssp ------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGG
T ss_pred ------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccccc
Confidence 0115899999999999988877776655 89999999999998766543222 1
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccC--------CceecCcEEEE
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD--------GWFHTGDIGEW 505 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~--------g~~~TGDlg~~ 505 (663)
.....++|+|+++++++|+| +++.. .++.|+.|||+|+|+.+++||+++++.|++.|.+ +||+|||+|++
T Consensus 329 ~~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 329 EEDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GSSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 22346899999999999999 66553 3556899999999999999999999999999843 79999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC--CeEEEEEecChHHHHHHHHHcCCCCChh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE--SFLVAIVNPNKDALERWAAENGVNGDFK 583 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 583 (663)
++||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ ..++++++...+. +
T Consensus 407 ~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~- 471 (620)
T 4dg8_A 407 DEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------S- 471 (620)
T ss_dssp CTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C-
T ss_pred CCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------H-
Confidence 999999999999999998 8999999999999999999999999986654 3555555543211 0
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.+.+ . ..|+.|++|+.+++++.. |+|++||++|++|++.+.+
T Consensus 472 ------------~~~l----~-~~Lp~y~~P~~~~~v~~l------P~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 472 ------------PQAL----L-RQLPTWQRPHACVRVEAL------PLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ------------CHHH----H-HHSCGGGSCSEEEECSSC------CCC----CCHHHHHHHTCS
T ss_pred ------------HHHH----H-HhChhhcCCcEEEEECcC------CCCcccCHhHHHHhhcccc
Confidence 1112 1 469999999999999665 8999999999999887644
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-69 Score=597.51 Aligned_cols=491 Identities=21% Similarity=0.245 Sum_probs=375.4
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
||.++|.++++++||++|+++. + +++||+||.++++++|++|.+. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 2 5799999999999999999987 89999999999999999999999
Q ss_pred hcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE-eHH
Q 006047 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY-SWD 203 (663)
Q Consensus 125 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~ 203 (663)
++|++++|+++.++.+++.++|+.++++++|++............. ..+..+.......... . ........ ...
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLL-D--NTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeeccccccc-c--cccccccccchh
Confidence 9999999999999999999999999999999998765433221110 1111111100000000 0 00000000 011
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 283 (663)
.................++++++++|||||||.||+|.+||+++.+.+......+ ++.++|++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111223345789999999999999999999999999999998887777 78999999999999999999
Q ss_pred HHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCC
Q 006047 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (663)
Q Consensus 284 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (663)
..++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999988652110
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-ccccCccC
Q 006047 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVG 441 (663)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G 441 (663)
...++|.+++||+++++++.+.+++ +++++++.||+||+++.+....... .....++|
T Consensus 272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0026899999999999999999987 5999999999999987655544322 23357899
Q ss_pred ccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeecccee
Q 006047 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521 (663)
Q Consensus 442 ~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i 521 (663)
.|+++++++|+| ++ .|+.|||+|+|+.++.||+++++.+.+ |.+|||+|||+|++++||++++.||.+|+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999999 43 346899999999999999999998887 889999999999999999999999999999
Q ss_pred ecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHH
Q 006047 522 KLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGE 598 (663)
Q Consensus 522 ~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 598 (663)
++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++++++...+. . .++
T Consensus 402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~--------~~~ 454 (501)
T 3ipl_A 402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------S--------KAQ 454 (501)
T ss_dssp EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------C--------HHH
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------C--------HHH
Confidence 96 8999999999999999999999999997654 4788888865321 1 134
Q ss_pred HHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 599 LSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 599 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++.+++.
T Consensus 455 l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 455 LIAYLS-KHLAKYKVPKHFEKVDTL------PYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHHHH-HHSCGGGSCSEEEECSSC------C-------------------
T ss_pred HHHHHH-hhCccccCCCEEEEeccc------CCCCCCCEeHHHHhhccccc
Confidence 555555 679999999999999766 89999999999999988764
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-69 Score=641.44 Aligned_cols=537 Identities=24% Similarity=0.284 Sum_probs=345.9
Q ss_pred CCCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCC
Q 006047 20 RPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCG 99 (663)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~g 99 (663)
.+..+.+|++..... ..+...++.++|.++++++||++|+++. +.. +++||+||.++++++|++|+++|
T Consensus 41 ~~~~~~~~~~~~~~~----~~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~G 109 (979)
T 3tsy_A 41 NNNSDVIFRSKLPDI----YIPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLG 109 (979)
T ss_dssp ----CCCBCCSSCCC----CCCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCceeecCCCCC----CCCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcC
Confidence 345566777754322 2345689999999999999999999864 322 67999999999999999999999
Q ss_pred CCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEE
Q 006047 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179 (663)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii 179 (663)
+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+....... ...++
T Consensus 110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~ 186 (979)
T 3tsy_A 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---GVVIV 186 (979)
T ss_dssp CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---CCEEE
T ss_pred CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---CceEE
Confidence 999999999999999999999999999999999999999999999999999999999987665444332111 12344
Q ss_pred EecCCChhhHHHHhhcCcEEEeHHHHHhcccc--cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhh
Q 006047 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257 (663)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~ 257 (663)
.++..... .......++.++...... ...+.....++++++++|||||||.||||+++|+++++.+......
T Consensus 187 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 260 (979)
T 3tsy_A 187 CIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG 260 (979)
T ss_dssp ECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCS
T ss_pred EeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHh
Confidence 44332110 001124455555543322 1233445678999999999999999999999999999887765432
Q ss_pred hhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHH
Q 006047 258 LESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (663)
Q Consensus 258 ~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 335 (663)
.. ....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 261 ~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~- 338 (979)
T 3tsy_A 261 EN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET- 338 (979)
T ss_dssp SS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG-
T ss_pred hc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc-
Confidence 10 0125778999999999999999965 6778999999999876 999999999999999999999999988652110
Q ss_pred HhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCcee
Q 006047 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVL 414 (663)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~ 414 (663)
. ...++++|.+++||+++++++.+++++.+ +++++
T Consensus 339 ------------------------------------~--------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~ 374 (979)
T 3tsy_A 339 ------------------------------------E--------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLG 374 (979)
T ss_dssp ------------------------------------G--------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEE
T ss_pred ------------------------------------c--------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEE
Confidence 0 11126899999999999999999999888 89999
Q ss_pred ecccccccccceeccC----CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhc
Q 006047 415 QGYGLTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490 (663)
Q Consensus 415 ~~yG~tE~~~~~~~~~----~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~ 490 (663)
+.||+||++.+++... .......+++|.|+++++++|+|.+++ .+++.|+.|||+|+|+.++.||+++|+.+++
T Consensus 375 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~--~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~ 452 (979)
T 3tsy_A 375 QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG--DSLSRNQPGEICIRGHQIMKGYLNNPAATAE 452 (979)
T ss_dssp ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCC--CCCCCCCccEEEEECCCccccccCChhhhhh
Confidence 9999999997665432 112233578999999999999993334 4566789999999999999999999999999
Q ss_pred cc-cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecCh
Q 006047 491 VM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNK 566 (663)
Q Consensus 491 ~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~ 566 (663)
.| .+|||+|||+|++++||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 453 ~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~ 531 (979)
T 3tsy_A 453 TIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSK 531 (979)
T ss_dssp HBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------------------
T ss_pred hccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECC
Confidence 99 7999999999999999999999999999997 8999999999999999999999999997654 58899998766
Q ss_pred HHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 567 DALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
+.. .-.++|+++++ +.|+.|++|+.|++++.. |+|++||++|++|+++|
T Consensus 532 ~~~------------------------~~~~~l~~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~r~~L~~~~ 580 (979)
T 3tsy_A 532 DSE------------------------LSEDDVKQFVS-KQVVFYKRINKVFFTESI------PKAPSGKILRKDLRAKL 580 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC------------------------CCHHHHHHHHH-HhcccccCCeEEEEeCCc------CcCCCCCeeHHHHHHHH
Confidence 430 01234455555 789999999999988665 89999999999999999
Q ss_pred HHHHHHHhcc
Q 006047 647 QVTFLLVFSE 656 (663)
Q Consensus 647 ~~~~~~~~~~ 656 (663)
.+.+...|..
T Consensus 581 ~~~~~~~~~~ 590 (979)
T 3tsy_A 581 ANGLGSGMAS 590 (979)
T ss_dssp --------CC
T ss_pred HhhcCCcccc
Confidence 9888777754
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-69 Score=594.70 Aligned_cols=476 Identities=24% Similarity=0.318 Sum_probs=374.5
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 42 GMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
.|.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|++++++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 478899999999999987 9999864 2 67999999999999998774 4889999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|+++.++.+++.++|+.++++++|++.+... ......+..+ .+...
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~---------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR---------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc----------------
Confidence 999999999999999999999999999999999999875211 0001111111 11110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.....+.....++++++++|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0111223345779999999999999999999999999999999888877 88999999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 281 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
.|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+....
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 265 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP---------------------- 265 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH----------------------
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc----------------------
Confidence 99875 7888999999998876 889999999 8899999999999999876432110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccC
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (663)
. ....+ +++|.+++||+++++++.+++.+.+++++++.||+||++..+....... ....
T Consensus 266 -----------~-~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~ 324 (505)
T 3nyq_A 266 -----------E-LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRAG 324 (505)
T ss_dssp -----------H-HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCTT
T ss_pred -----------h-hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCCC
Confidence 0 00011 4789999999999999999999989999999999999987766554433 3348
Q ss_pred ccCccccCeEEEEeecCCCccccC-CCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeee
Q 006047 439 TVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 439 ~~G~p~~~~~v~iv~~~~~~~~~~-~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
++|+|+++++++|+| +++...+. +.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++++||+|+++||
T Consensus 325 ~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR 403 (505)
T 3nyq_A 325 TVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGR 403 (505)
T ss_dssp CCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCC
Confidence 899999999999999 77765553 447999999999999999999999999999 699999999999999999999999
Q ss_pred c-cceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 517 K-KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 517 ~-~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
. ||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++. ....
T Consensus 404 ~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~-------------------~~~~- 462 (505)
T 3nyq_A 404 KATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA-------------------APPA- 462 (505)
T ss_dssp SSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT-------------------SCCC-
T ss_pred ccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC-------------------CCCC-
Confidence 8 589996 8999999999999999999999999997654 5899999987532 0001
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++
T Consensus 463 ---~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 463 ---LGTLADHVA-ARLAPHKRPRVVRYLDAV------PRNDMGKIMKRALNR 504 (505)
T ss_dssp ---HHHHHHHHH-HHTCGGGSCSEEEECSCC------CC-------------
T ss_pred ---HHHHHHHHH-hhCCCCcCccEEEEECCC------CCCCCcCeeHHhhcc
Confidence 234555555 679999999999999765 899999999999976
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-67 Score=594.37 Aligned_cols=505 Identities=18% Similarity=0.189 Sum_probs=396.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
..+..++.++|.++++.+||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~ 81 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHH
Confidence 345689999999999999999999886 42 2337899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCC---ChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 120 MEACNALGLHCVPLYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~---~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
+|||+++|++++|+++.+ +.+++.++++.+++++++++.+....+........+....+
T Consensus 82 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------------------ 143 (590)
T 3kxw_A 82 FLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI------------------ 143 (590)
T ss_dssp HHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE------------------
T ss_pred HHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc------------------
Confidence 999999999999999988 45789999999999999998776554433221111111111
Q ss_pred cEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCC
Q 006047 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 276 (663)
.....+.+... ...........++++++++|||||||.||||++||+++++.+......+ ++.++|++++++|
T Consensus 144 -~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p 216 (590)
T 3kxw_A 144 -PAIALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLP 216 (590)
T ss_dssp -EEEEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSC
T ss_pred -ceeechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecC
Confidence 11122221111 1112334456789999999999999999999999999999999988777 8899999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 277 LAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 277 ~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
++|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|..+..+++.+.....
T Consensus 217 ~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------------- 283 (590)
T 3kxw_A 217 PHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK------------- 283 (590)
T ss_dssp TTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-------------
T ss_pred CCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-------------
Confidence 999999987 7888999999998864 789999999999999999999999988764321110
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC------Cceeeccccccccc
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCA 424 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~ 424 (663)
....++++|.+++||+++++++.+.+.+.++ ..+++.||+||++.
T Consensus 284 -----------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~ 334 (590)
T 3kxw_A 284 -----------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATL 334 (590)
T ss_dssp -----------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSS
T ss_pred -----------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccc
Confidence 0112268999999999999999999998873 47999999999998
Q ss_pred ceeccCCC--------------------------CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCccc
Q 006047 425 GTFVSLPN--------------------------EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVF 478 (663)
Q Consensus 425 ~~~~~~~~--------------------------~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~ 478 (663)
.++..... ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+||+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~ 410 (590)
T 3kxw_A 335 LVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVA 410 (590)
T ss_dssp EEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSC
T ss_pred eeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccc
Confidence 77654321 11224678999998 78888 442 35667789999999999999
Q ss_pred ccccCChhhhhccccC-------C--ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHH-hcCcCcc--e
Q 006047 479 SGYYKREDLTKEVMVD-------G--WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY-ALVSAID--S 546 (663)
Q Consensus 479 ~gy~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l-~~~~~V~--~ 546 (663)
.||+++++.+++.|.+ | ||+|||+|++| ||+|+++||.||+|++ +|++|+|.|||++| ..+|+|. +
T Consensus 411 ~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~ 488 (590)
T 3kxw_A 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGK 488 (590)
T ss_dssp CCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEE
T ss_pred ccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCcc
Confidence 9999999999998843 5 99999999999 9999999999999997 89999999999999 8999998 7
Q ss_pred EEEEeeCCC--CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCcccee-EEEEccCC
Q 006047 547 VWVYGNSFE--SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIK-AVHLEPVP 623 (663)
Q Consensus 547 ~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~ 623 (663)
|+|++.+++ +.+++++++.++. ......+.+.+.+++.+.. .++.|. .+.++.
T Consensus 489 ~~v~~~~~~~~~~~~~~v~~~~~~------------------~~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~-- 544 (590)
T 3kxw_A 489 CAAFVIQEEHEYKLTVMCEVKNRF------------------MDDVAQDNLFNEIFELVYE----NHQLEVHTIVLIP-- 544 (590)
T ss_dssp EEEEEEEETTEEEEEEEEEESCTT------------------CCHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEE--
T ss_pred EEEEEecCCCCceEEEEEEecccc------------------ccchhHHHHHHHHHHHHHH----HcCCceeEEEEEC--
Confidence 888886543 5788888876532 1122234445555544431 244453 455542
Q ss_pred CCCCCCccCcccccchHHHHHHHHH
Q 006047 624 FDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 624 ~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
++.+|+|++|||+|++|+++|.+
T Consensus 545 --~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 545 --LKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp --TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred --CCccCcCCCcHHHHHHHHHHHHc
Confidence 12238999999999999999876
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-68 Score=592.22 Aligned_cols=525 Identities=18% Similarity=0.160 Sum_probs=318.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceEEEee-ccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 006047 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREI-VDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (663)
Q Consensus 37 ~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~-~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~ 115 (663)
.....+..|+.++|+++++++||++|+++... .+......+++||+||.++++++|++|.+.|+ +||+|+++++|+++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 34445668899999999999999999987610 01112234789999999999999999999999 79999999999999
Q ss_pred hHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhc
Q 006047 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (663)
Q Consensus 116 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 195 (663)
+++++|||+++|++++|+++.++.+++.++|+.++++++|+++....... ......++....
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~------------ 153 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN------------ 153 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC------------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc------------
Confidence 99999999999999999999999999999999999999999876543221 011122222111
Q ss_pred CcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhh---hccccCCCCcEEE
Q 006047 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSEDVYV 272 (663)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~~ 272 (663)
..+.+.+..... ........++++++++|||||||.||||++||+++.+.+..+...+. .....+...++++
T Consensus 154 ----~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (562)
T 3ite_A 154 ----QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFL 228 (562)
T ss_dssp ----HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEE
T ss_pred ----hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEE
Confidence 012222222211 12233456788999999999999999999999999998877655432 1112477889999
Q ss_pred EcCChhhHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
+..|++|..++..++.++..|+++++.+. .+..+.+.++++++|+++++|+++..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~-------------------- 288 (562)
T 3ite_A 229 CLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL-------------------- 288 (562)
T ss_dssp CCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC--------------------
T ss_pred EecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc--------------------
Confidence 99999998888778889999999988764 46788899999999999999998766421
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccC
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (663)
. ....+++|.+++||+++++++.+.+++.+++.+++.||+||++..+....
T Consensus 289 -----------------~------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 339 (562)
T 3ite_A 289 -----------------V------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGR 339 (562)
T ss_dssp -----------------C------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEE
T ss_pred -----------------C------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeee
Confidence 0 01125899999999999999999999888999999999999987766554
Q ss_pred CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCC--ceecCcEEEEcCC
Q 006047 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTGDIGEWQPD 508 (663)
Q Consensus 431 ~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g--~~~TGDlg~~~~~ 508 (663)
........++|.|+++++++|++ +++. .+++.|+.|||+|+|++++.||+++++.+...+.+| ||+|||+|++|+|
T Consensus 340 ~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~d 417 (562)
T 3ite_A 340 ILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDAD 417 (562)
T ss_dssp CCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTT
T ss_pred ecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCC
Confidence 44444457899999999999998 4332 456678999999999999999999999888777677 9999999999999
Q ss_pred CcEEEeeeccceeecCCCceeccHHHHHHHhcC-cCcceEEEEeeCCC---C-eEEEEEecChHHHHHHHHHcCCCCChh
Q 006047 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYALV-SAIDSVWVYGNSFE---S-FLVAIVNPNKDALERWAAENGVNGDFK 583 (663)
Q Consensus 509 G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~-~~V~~~~v~~~~~~---~-~~~a~v~~~~~~~~~~~~~~~~~~~~~ 583 (663)
|+|+++||.||+|++ +|++|+|.|||++|.+| |.+.+++|++.+++ + .+++++......... .+.
T Consensus 418 G~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~ 487 (562)
T 3ite_A 418 SSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG---------ELR 487 (562)
T ss_dssp SCEEEEEEC-----------------------------------------------------------------------
T ss_pred CeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc---------ccc
Confidence 999999999999996 89999999999999888 77888888876654 2 344444433322100 000
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccC-cccccchHHHHHHHHHHH-HHHhcc
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLT-PTYKKKRPQLLKHYQVTF-LLVFSE 656 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t-~~GKv~R~~l~~~~~~~~-~~~~~~ 656 (663)
. ..+..+.+.++|+++++ .+|+.|++|+.|++++.. |+| ++||++|++|+++|++.. ..+++.
T Consensus 488 ~---~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~l------P~t~~~GKi~r~~L~~~~~~~~~~~~~~~ 552 (562)
T 3ite_A 488 W---INENYKEINNSLRQACE-QTLPAYMVPDFIIPISFI------PLRDTSAKTDAKALEHMFHTLSLGELFGE 552 (562)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred c---cccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccC------CCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence 0 00112334567777777 789999999999998765 788 899999999999997643 444443
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-64 Score=614.57 Aligned_cols=477 Identities=19% Similarity=0.253 Sum_probs=394.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|+++||++|.++.+++.++|+.+++++++++......+... +.....+.++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc-----------------
Confidence 999999999999999999999999999999999987654332111 1112333332210
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
. .. .....+.....+++++|++|||||||.||||+++|+++.+. ......+ ++++++++++..|++|..+
T Consensus 592 -~-~~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 -R-FE--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -G-GG--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred -c-cc--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 0 00 01112233457899999999999999999999999999876 3333333 6789999999999998888
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
...++.++..|+++++.+. ++..+.+.|+++++|+++++|+++..+......
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 7778889999999999874 889999999999999999999999987642100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC---c
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---M 434 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~ 434 (663)
.+ +++|.+++||++++.++.+.+.+.+ +..+++.||+||++..++...... .
T Consensus 718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 00 3799999999999999988888776 478999999999987665543221 2
Q ss_pred cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc-------CCceecCcEEEEcC
Q 006047 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGDIGEWQP 507 (663)
Q Consensus 435 ~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 507 (663)
....++|+|+++++++|+| +++. +++.|+.|||+|+|+.+++||+++|+.|++.|. ++||||||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2346899999999999999 6654 556779999999999999999999999999882 34999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF---ESFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
||.|+++||.||+||+ +|++|.|.|||++|.+||+|++|+|++.++ +..++|+|++....
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~---------------- 913 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL---------------- 913 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------------
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------------
Confidence 9999999999999998 799999999999999999999999998654 36899999876421
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
. .++|+++++ ..||.|++|..|++++.. |+|++||++|++|.+.
T Consensus 914 --~--------~~~l~~~l~-~~Lp~ymvP~~~~~l~~l------P~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 914 --S--------AEDVKAHLK-KQLPAYMVPQTFTFLDEL------PLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp --C--------HHHHHHHHH-HHSCGGGSCSEEEEESCC------CCCSSCSSCCSCCCCC
T ss_pred --C--------HHHHHHHHH-HhChHhhhccEEEEeccc------CCCCCcccCHhhcCCc
Confidence 1 133455555 689999999999999766 8999999999988543
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=482.05 Aligned_cols=403 Identities=17% Similarity=0.210 Sum_probs=315.7
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
....+++.++|.++++++||++|+++....++..++.+++||+||.++++++|++|++.|+ +||+|+|+++|+++++++
T Consensus 20 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~ 98 (480)
T 3t5a_A 20 HMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVA 98 (480)
T ss_dssp ----CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHH
Confidence 3446899999999999999999999872111334456889999999999999999999996 999999999999999999
Q ss_pred HHHHHhcCCeEeeccC---CCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCC-CCcEEEEecCCChhhHHHHhhc
Q 006047 120 MEACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIEKY 195 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~ 195 (663)
+|||+++|++++|+++ .++.+++.++|+.++++++|++......+......... ....++.++.
T Consensus 99 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 166 (480)
T 3t5a_A 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL------------ 166 (480)
T ss_dssp HHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG------------
T ss_pred HHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc------------
Confidence 9999999999999999 78899999999999999999999888776665432211 1112222211
Q ss_pred CcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCC------Cc
Q 006047 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS------ED 269 (663)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d 269 (663)
+.. ............++++++++|||||||.||||++||+++++.+......+ .... ++
T Consensus 167 ---------~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d 231 (480)
T 3t5a_A 167 ---------LDL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNS 231 (480)
T ss_dssp ---------SCT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTE
T ss_pred ---------ccc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCC
Confidence 111 11112233456788999999999999999999999999999988877766 5555 99
Q ss_pred EEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhH
Q 006047 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (663)
Q Consensus 270 ~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (663)
++++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|+++..++......
T Consensus 232 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~-------- 302 (480)
T 3t5a_A 232 ALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD-------- 302 (480)
T ss_dssp EEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT--------
T ss_pred eEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc--------
Confidence 9999999999999865 7888999999999863 899999999999999 889999888876532110
Q ss_pred HHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC------Cceeecc
Q 006047 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGY 417 (663)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~y 417 (663)
+. .....+++||.+++||+++++++.+++++.++ +.+++.|
T Consensus 303 -------------------------~~--------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y 349 (480)
T 3t5a_A 303 -------------------------DD--------MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSY 349 (480)
T ss_dssp -------------------------GG--------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEE
T ss_pred -------------------------cc--------ccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccc
Confidence 00 01112268999999999999999999998874 4799999
Q ss_pred cccccccceeccCCCC------------------------ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEc
Q 006047 418 GLTETCAGTFVSLPNE------------------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473 (663)
Q Consensus 418 G~tE~~~~~~~~~~~~------------------------~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~ 473 (663)
|+||++..++...... .....++|+|++ ++++|+| +++ ..+++.|+.|||+|+
T Consensus 350 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v~ 426 (480)
T 3t5a_A 350 WLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWVH 426 (480)
T ss_dssp EETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEEE
T ss_pred cccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEEe
Confidence 9999998777655432 122468999999 9999999 442 245567899999999
Q ss_pred cCcccccccCChhhhhccc------------cCCceecCcEEEEcCCCcEEEeee
Q 006047 474 GSTVFSGYYKREDLTKEVM------------VDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 474 g~~~~~gy~~~~~~~~~~~------------~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
|++++.||+++++.|++.| .+|||+|||+|+++ ||+|+++||
T Consensus 427 g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 427 GDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp STTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9999999999999999988 35699999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=408.67 Aligned_cols=314 Identities=16% Similarity=0.160 Sum_probs=258.7
Q ss_pred CCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEc
Q 006047 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (663)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 300 (663)
.++++||+|||||||.||||++||+++.+.+......+ +++++|++++++|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999999888877 8899999999999999999988888999999998876
Q ss_pred CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHH
Q 006047 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380 (663)
Q Consensus 301 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (663)
. ....++.++++++|+++++|+++..+++....
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------------- 143 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT---------------------------------------------- 143 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------
Confidence 4 23446789999999999999999988652110
Q ss_pred HHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccc
Q 006047 381 QSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460 (663)
Q Consensus 381 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~ 460 (663)
...++++|.+++||+++++++.+++++ +++++++.||+||++..+.......... +++|.+.|++++.+.+
T Consensus 144 ~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 144 SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 001157999999999999999999986 5999999999999988777665544433 7889999999887744
Q ss_pred cCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHH--
Q 006047 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY-- 538 (663)
Q Consensus 461 ~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l-- 538 (663)
.|||+++|+.. .+|||+|||+|++|++| ++++||.||+|++ +|++|+|.|||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 69999998632 36899999999999888 6777999999996 89999999999877
Q ss_pred -hcCcCcceEEEE-eeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccc
Q 006047 539 -ALVSAIDSVWVY-GNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEF 613 (663)
Q Consensus 539 -~~~~~V~~~~v~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~ 613 (663)
.+||+|.+|+|+ +.+++ +.++|+|+..... . ..++|+++++ .+|+.|++
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---------------------~----~~~~l~~~l~-~~L~~~~~ 325 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---------------------A----LTERLTAEIR-SRVSTYEN 325 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---------------------H----HHHHHHHHHH-HHSCGGGS
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC---------------------c----CHHHHHHHHH-hhCCCCCC
Confidence 468999998876 44443 5788888876532 1 2234555665 67999999
Q ss_pred eeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 614 IKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 614 p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
|++|++++.. |+|++|||+|++|++++++..
T Consensus 326 P~~i~~v~~l------P~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 326 PKHIYFAKAF------AKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CSCEEEESSC------CBCTTSCBCHHHHHHHTC---
T ss_pred ceEEEEECCc------CCCCCCChhHHHHHHHhhhhc
Confidence 9999999765 899999999999999887643
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=372.40 Aligned_cols=332 Identities=16% Similarity=0.114 Sum_probs=250.3
Q ss_pred CCCC-CCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcE
Q 006047 218 VKKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAA 295 (663)
Q Consensus 218 ~~~~-~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~ 295 (663)
..++ +++++++|||||||.||+|.+||+++.+....+...+.. .++.++|++++.+|+.|..+. ...+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 4455 899999999999999999999999998877665443311 267899999999998654444 457778999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHH
Q 006047 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (663)
Q Consensus 296 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (663)
+++.+. ++..+++.|+++++|+++++|+++..+++.+.......
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988765 89999999999999999999999999987654321110
Q ss_pred hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc-eeccCCCCccccCccCccccCeEEEEee
Q 006047 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (663)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~iv~ 453 (663)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +...... ....|.|.+++.++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~----~~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE----QNGMHFWEDCYLVEIID 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT----CSSEEECTTTEEEEEEC
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC----CCeeEEccCceEEEEEE
Confidence 0158999999999999999999999999999999999999654 3322211 12356777899999999
Q ss_pred cCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCC------c---EEEeeeccceeecC
Q 006047 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDG------S---LKIIDRKKNIFKLS 524 (663)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G------~---l~~~GR~~d~i~i~ 524 (663)
.+++ .+++.|+.|||+|+|. +.+.|.++||+|||+|+++++| + +++.||.+|+|++
T Consensus 272 ~~~g--~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~- 336 (436)
T 3qov_A 272 PETG--EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII- 336 (436)
T ss_dssp TTTC--SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred CCCC--CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence 4444 4556789999999984 2344568999999999999998 5 6999999999997
Q ss_pred CCceeccHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHH
Q 006047 525 QGEYVAVENLENIYALVSAIDSVWVYGNSF---ESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601 (663)
Q Consensus 525 ~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 601 (663)
+|++|+|.+||++|.+||+|.+++|++..+ .+.++|+|+++ +.. ..+....+.+.+.+++
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~----------------~~~~~~~~~l~~~l~~ 399 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS----------------TDNYIELEKIRRDIIR 399 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC----------------CCCHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc----------------ccchhhHHHHHHHHHH
Confidence 899999999999999999999999988654 46899999988 420 0111223344444444
Q ss_pred HHHHcCCCCc-cceeEEEEccCCCCCCCCccCcccccchH
Q 006047 602 VAKEKKLKGF-EFIKAVHLEPVPFDIERDLLTPTYKKKRP 640 (663)
Q Consensus 602 ~~~~~~l~~~-~~p~~i~~~~~~~~~~~~p~t~~GKv~R~ 640 (663)
.+. .+ ..|..|.+++. +.+|+|+ ||++|.
T Consensus 400 ~l~-----~~~~~p~~i~~v~~----~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 400 QLK-----DEILVTPKVKLVKK----GSLPQSE-GKAVRV 429 (436)
T ss_dssp HHH-----HHHSSCCEEEEECT----TCCC--------CE
T ss_pred HHH-----HhcCCceEEEEeCC----CcccCcC-CcceEE
Confidence 333 34 56777888751 1338999 999985
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=372.87 Aligned_cols=338 Identities=16% Similarity=0.120 Sum_probs=257.5
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh-hhHHHHHHHHHHHHcCcE
Q 006047 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAA 295 (663)
Q Consensus 217 ~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~ 295 (663)
....++++++++|||||||.||+|++||+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|++
T Consensus 87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~ 164 (443)
T 2y4o_A 87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCM 164 (443)
T ss_dssp CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCE
T ss_pred cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCE
Confidence 34567899999999999999999999999998876655442211 267899999999998 577777777888999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHH
Q 006047 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (663)
Q Consensus 296 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (663)
+++.+. ++..+++.|+++++|+++++|+++..|++.+.......
T Consensus 165 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------------------------- 209 (443)
T 2y4o_A 165 VVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------------------------- 209 (443)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred EEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988765 99999999999999999999999999877543321000
Q ss_pred hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc-eeccCCCCccccCccCccccCeEEEEee
Q 006047 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (663)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~iv~ 453 (663)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........ ...+.|.+++.++|+|
T Consensus 210 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d 278 (443)
T 2y4o_A 210 --------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID 278 (443)
T ss_dssp --------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC
T ss_pred --------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc
Confidence 0157999999999999999999998889999999999998442 322221111 1244566899999999
Q ss_pred cCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC-CcE-----EEeeeccceeecCCCc
Q 006047 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD-GSL-----KIIDRKKNIFKLSQGE 527 (663)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-G~l-----~~~GR~~d~i~i~~G~ 527 (663)
.+++ .+++.|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.+|+|++ +|+
T Consensus 279 ~~~g--~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~ 343 (443)
T 2y4o_A 279 PVTG--EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGV 343 (443)
T ss_dssp TTTC--CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTE
T ss_pred CCCC--CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCE
Confidence 3334 4556789999999983 234456789999999999999 987 899999999997 799
Q ss_pred eeccHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEecCh--HHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHH
Q 006047 528 YVAVENLENIYALVSAIDSVWVYGNSF---ESFLVAIVNPNK--DALERWAAENGVNGDFKSLCENPKAKEFILGELSRV 602 (663)
Q Consensus 528 ~v~~~~IE~~l~~~~~V~~~~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 602 (663)
+|+|.+||++|.+||+|.++++++.++ .+.++++|++.+ +. . ......+.+.+.+++
T Consensus 344 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~----------~-------~~~~~~~~l~~~l~~- 405 (443)
T 2y4o_A 344 NVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA----------S-------VTDGERAALARELQH- 405 (443)
T ss_dssp EECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT----------T-------CCHHHHHHHHHHHHH-
T ss_pred EECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc----------c-------chhhHHHHHHHHHHH-
Confidence 999999999999999999999887532 368899999876 21 0 011122334444443
Q ss_pred HHHcCCCCc-cceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 603 AKEKKLKGF-EFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 603 ~~~~~l~~~-~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
.|+.+ ..|..|.+++ ++.+|+|++||++|+..+
T Consensus 406 ----~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 406 ----RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDR 439 (443)
T ss_dssp ----HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEEC
T ss_pred ----HHHHHhCCceEEEEeC----CCcccCccCCcceEEEec
Confidence 33344 4677777773 123389999999997543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=367.67 Aligned_cols=335 Identities=17% Similarity=0.142 Sum_probs=256.5
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh-hhHHHHHHHHHHHHcCcE
Q 006047 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAA 295 (663)
Q Consensus 217 ~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~ 295 (663)
...+++++++++|||||||.||+|++||+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 34567899999999999999999999999998776654432211 267899999999998 688887778888999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHH
Q 006047 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (663)
Q Consensus 296 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (663)
+++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------------------------- 207 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP----------------------------------- 207 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 987765 99999999999999999999999999887543321000
Q ss_pred hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc-eeccCCCCccccCccCccccCeEEEEee
Q 006047 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (663)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~iv~ 453 (663)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........ ...+.|.+++.++|+|
T Consensus 208 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d 276 (437)
T 2y27_A 208 --------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID 276 (437)
T ss_dssp --------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC
T ss_pred --------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc
Confidence 0157999999999999999999998889999999999998432 332222111 1245567899999999
Q ss_pred cCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC-CCcE-----EEeeeccceeecCCCc
Q 006047 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP-DGSL-----KIIDRKKNIFKLSQGE 527 (663)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~G~l-----~~~GR~~d~i~i~~G~ 527 (663)
++. ..+++.|+.|||+|+|. +.+.|.++||+|||+|++++ +|++ ++.||.+|+|++ +|+
T Consensus 277 -~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~ 341 (437)
T 2y27_A 277 -PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGV 341 (437)
T ss_dssp -TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTE
T ss_pred -CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCe
Confidence 432 24566789999999983 33445689999999999998 6985 899999999997 899
Q ss_pred eeccHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHH
Q 006047 528 YVAVENLENIYALVSAIDSVWVYGNS---FESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAK 604 (663)
Q Consensus 528 ~v~~~~IE~~l~~~~~V~~~~v~~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 604 (663)
+|+|.+||++|.+||+|.++++++.+ ..+.++|+|++.++.. ......+.+.+.+++
T Consensus 342 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~-----------------~~~~~~~~l~~~l~~--- 401 (437)
T 2y27_A 342 NVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA-----------------PDTAAIQVAKQALAY--- 401 (437)
T ss_dssp EECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT-----------------TCHHHHHHHHHHHHH---
T ss_pred EECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc-----------------chhhhHHHHHHHHHH---
Confidence 99999999999999999998888753 2468999999876420 011122334444433
Q ss_pred HcCCCCc-cceeEEEEccCCCCCCCCccCcccccchHH
Q 006047 605 EKKLKGF-EFIKAVHLEPVPFDIERDLLTPTYKKKRPQ 641 (663)
Q Consensus 605 ~~~l~~~-~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~ 641 (663)
.|+.+ ..|..|.+++ .+.+|+|+ ||++|+.
T Consensus 402 --~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 402 --DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV 432 (437)
T ss_dssp --HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred --HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence 34455 4777888773 12348999 9999964
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=243.59 Aligned_cols=238 Identities=15% Similarity=0.109 Sum_probs=173.2
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh-hhHHHHHHHHHHHHcCcEE
Q 006047 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAI 296 (663)
Q Consensus 218 ~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~ 296 (663)
..+++++++++|||||||.||+|.++|+++.+....+...+. ..++.++|++++.+|+ +|..++...+.++..|+.+
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEE
Confidence 347789999999999999999999999999998885543321 1267899999999999 9999998877779999943
Q ss_pred EEEcCCHH-----------------------HHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006047 297 GFWRGDVK-----------------------LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (663)
Q Consensus 297 v~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (663)
+....++. .+++.|+++++|+++++|+++..|++...
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-------------------- 224 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE-------------------- 224 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--------------------
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--------------------
Confidence 33333666 77889999999999999999999865311
Q ss_pred hHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHH-Hhc-CCceeecccccccccceeccCC
Q 006047 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR-VVA-CAHVLQGYGLTETCAGTFVSLP 431 (663)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~ 431 (663)
.....+ +++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++..+..
T Consensus 225 -----------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~ 279 (369)
T 3hgu_A 225 -----------------VVLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279 (369)
T ss_dssp -----------------HHHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred -----------------hhcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence 011111 4799999999999999999999 888 8999999999999876543321
Q ss_pred CCccccCccCcc------ccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEE
Q 006047 432 NEMSMIGTVGPP------VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEW 505 (663)
Q Consensus 432 ~~~~~~~~~G~p------~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 505 (663)
.++|.| +++++++|+|.+++ .+++.|+.|||+|++....... -+|+|||++..
T Consensus 280 ------~~~G~~~~~~~~~~~~~v~ivD~~~g--~~vp~G~~GEl~vt~l~~~~~l-------------~ry~tgD~~~~ 338 (369)
T 3hgu_A 280 ------TSESQQVIYDSFSPFITYDVVDSITA--QTVEYGERGNVIVTHLSPWAFY-------------PRVAERDTAIR 338 (369)
T ss_dssp ------CTTCSSCEEECCTTTEEEEEECTTTC--SBCCTTCEEEEEEEEEETTEEE-------------EEEEEEEEEEE
T ss_pred ------ccCCCcccccCCCCCeEEEEECCCCC--cCCCCCCceEEEEEEcCccccc-------------ccccCCceEEE
Confidence 148888 99999999993254 4566789999999984321111 23889999887
Q ss_pred cCC--C-------cEEEeeeccceeec
Q 006047 506 QPD--G-------SLKIIDRKKNIFKL 523 (663)
Q Consensus 506 ~~~--G-------~l~~~GR~~d~i~i 523 (663)
.+. | .+..++|.++..+|
T Consensus 339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 339 LPGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp ECCSTTCSSCEEEEEEECC--------
T ss_pred ecCCCCCcCcccccceeccccCCCcee
Confidence 543 2 24455666666655
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=102.26 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=65.8
Q ss_pred eeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHH
Q 006047 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKA 591 (663)
Q Consensus 515 GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (663)
.|.||+|++ +|.||+|.+||++|.+||+|.++++++.+++ +.+.++|+..++. ......
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-----------------~~~~~~ 62 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-----------------TDDYGR 62 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-----------------CCCHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-----------------ccccch
Confidence 489999998 8999999999999999999999998886543 5788888877642 023333
Q ss_pred HHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccch
Q 006047 592 KEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKR 639 (663)
Q Consensus 592 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R 639 (663)
.+.+.+.|++.++. .+ ..+..+.+++ .+++|+| +||++|
T Consensus 63 ~~~l~~~i~~~l~~-~~---gv~~~v~~v~----~~~lPrt-sGKi~R 101 (109)
T 3lax_A 63 LQALTREITRQLKD-EI---LVTPRVKLVP----KGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHH-HH---SSCCEEEEEC----TTCSCCC----CCC
T ss_pred hhhhHHHHHHHHHH-Hh---CCccceEEEc----CCeecCC-CCCcch
Confidence 44555555554442 11 1233566663 1445898 799988
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=100.91 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=82.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCc-cccC-eEEEEeecCC------
Q 006047 387 VRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPN-VDVCLESVPE------ 456 (663)
Q Consensus 387 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~iv~~~~------ 456 (663)
+.++..||. ......++..+ +.++. ..|++||+. +.....+... +...+. .+++ .-...++.++
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~--~~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPLCK--PEDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTTSC--GGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCCCCC--cccCceeecCCcEEEEEEeccccCCCcE
Confidence 767777773 33445555544 67777 899999963 2222211110 011121 1222 1222232111
Q ss_pred CccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC----CCcEEEeeeccceeecCCCceeccH
Q 006047 457 MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP----DGSLKIIDRKKNIFKLSQGEYVAVE 532 (663)
Q Consensus 457 ~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~i~~G~~v~~~ 532 (663)
-....+..|+.+||.++.. .|.|+ ||+||+.++.. ..++.|.||.++++.+ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 1123455778999999875 34444 99999999875 3579999999999997 79999999
Q ss_pred HHHHHHhcC
Q 006047 533 NLENIYALV 541 (663)
Q Consensus 533 ~IE~~l~~~ 541 (663)
+||++|.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999643
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-07 Score=99.11 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=92.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCc-cccC-eEEEEeecCCC-----
Q 006047 387 VRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPN-VDVCLESVPEM----- 457 (663)
Q Consensus 387 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~iv~~~~~----- 457 (663)
+.++..||. ......++..+ +.+++ ..|++||+. +.....+... +...+. .+|+ .-...++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~--p~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMSK--PSEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTSC--GGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCCC--cccCceeecCCcEEEEEEeccccccccc
Confidence 556666773 33345555544 66666 899999974 2222211110 011111 2222 12222321111
Q ss_pred -c-------cccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC----CCcEEEeeeccceeecCC
Q 006047 458 -E-------YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP----DGSLKIIDRKKNIFKLSQ 525 (663)
Q Consensus 458 -~-------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~i~~ 525 (663)
. ...+..|+.+||.++.. .|.|+ ||+||+++++. ..++.|.||.+++|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 13455778999999763 46655 99999999873 4689999999999997 8
Q ss_pred CceeccHHHHHHHhc------CcC--cceEEEEeeCC--CCeEEEEEec
Q 006047 526 GEYVAVENLENIYAL------VSA--IDSVWVYGNSF--ESFLVAIVNP 564 (663)
Q Consensus 526 G~~v~~~~IE~~l~~------~~~--V~~~~v~~~~~--~~~~~a~v~~ 564 (663)
|+++++.+||++|.. ..+ |.+..+..... +.+-+.++.+
T Consensus 444 Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl 492 (609)
T 4b2g_A 444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL 492 (609)
T ss_dssp SCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEE
Confidence 999999999999953 223 55555544322 2355555544
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-06 Score=90.75 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=92.1
Q ss_pred CceE---EEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCc-cccC---eEEEEeecC
Q 006047 385 GRVR---LILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPN---VDVCLESVP 455 (663)
Q Consensus 385 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~---~~v~iv~~~ 455 (663)
++++ .+..|+. ......++..+ +.++. ..|++||+. +.....+... ++..+. .+|+ .|..-++..
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~--~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTPRLS--PEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCTTSC--TTTCCEEECTTSCEEEEEEC---
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceecccee-eeeecCCCCC--ccccceeecCCcEEEEEEecccc
Confidence 5664 4444433 33345555544 67776 899999963 2222222111 011111 2222 222222200
Q ss_pred ------CCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC----CcEEEeeeccceeecCC
Q 006047 456 ------EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD----GSLKIIDRKKNIFKLSQ 525 (663)
Q Consensus 456 ------~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----G~l~~~GR~~d~i~i~~ 525 (663)
.-....+..|+.+||.++.. .|.|+ ||+||+.++..- .++.|.||.++++.+ .
T Consensus 376 ~~~~~~~v~l~eve~G~~YelviTt~---~GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~ 438 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEEYEVVITNY---AGLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-N 438 (581)
T ss_dssp ----CCCEEGGGCCTTCEEEEEEEST---TSCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCceeeHHHcCCCCeEEEEEeec---cceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-e
Confidence 01113455778999999874 34444 999999998642 479999999999997 7
Q ss_pred CceeccHHHHHHHhc------CcC--cceEEEEeeCC--CCeEEEEEecC
Q 006047 526 GEYVAVENLENIYAL------VSA--IDSVWVYGNSF--ESFLVAIVNPN 565 (663)
Q Consensus 526 G~~v~~~~IE~~l~~------~~~--V~~~~v~~~~~--~~~~~a~v~~~ 565 (663)
|+++++.+||.++.. ..+ |.|..+..... +.+-+.+..+.
T Consensus 439 Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 439 IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS 488 (581)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence 999999999999953 223 66665555322 24555555543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=1.1 Score=46.88 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=80.7
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~ 132 (663)
.++.++.+... .|.++.. ..+|...+...+..++..+...|+.++|++...++.. ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34666655542 5555533 4679999988888888888888999999999988863 3445567888999999887
Q ss_pred ccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh
Q 006047 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (663)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 166 (663)
++. .+.+.+...|+..++.+++........+.+
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 755 478899999999999999988766554443
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=90.70 E-value=1.3 Score=46.47 Aligned_cols=107 Identities=14% Similarity=0.029 Sum_probs=80.9
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~ 132 (663)
.++.++++... .|.++.. ..+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34566655442 5666543 4679999988888888888888999999999988863 3445567888899999887
Q ss_pred ccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh
Q 006047 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (663)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 166 (663)
++. .+.+.+...|+..++.+++........+.+
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 765 478899999999999999888766554433
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=1.5 Score=45.91 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=89.6
Q ss_pred CCCceEEEeeccCCCCc--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEeecc
Q 006047 59 NNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLY 134 (663)
Q Consensus 59 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~l~ 134 (663)
+.+|++... .|.++. ...+|.+.+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455655442 555553 34679999998888888888888999999999988753 445567788899999988775
Q ss_pred CCCChHHHHHHHhhcCccEEEEcCCChhhHhhcC-----CCcCCCCcEEEEecCC
Q 006047 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (663)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~-----~~~~~~~~~ii~~~~~ 184 (663)
. ..++.+...|+..++.+++........+.+.. ......++.++.-+..
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 4 47788999999999999998887665554431 1113567777765543
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=86.68 E-value=6.3 Score=41.84 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=85.6
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hhHHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP-EWIIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~v~l 133 (663)
.|+.+|++... .|.++.. ..+|++.+...+..+. ...++.++|++...+|-.- ..+..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777776653 5555533 4679888877665544 3458999999988887652 2344477888899998877
Q ss_pred cCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecC
Q 006047 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183 (663)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 183 (663)
+ ..+++.+...++..++.+++........+.+........++.++.-+.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 578999999999999999999887777666554433335666665443
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=80.43 E-value=4.6 Score=40.91 Aligned_cols=104 Identities=11% Similarity=-0.007 Sum_probs=69.9
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~ 132 (663)
.++.++.+... .|.++.. ..+|...+...+..++..+...|+.++|++..+++-+ .--....++++..|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 45666666553 5655543 4678888888877777777778999999999998863 2334445556888996555
Q ss_pred ccCCCChH-----------------------HHHHHHhhcCccEEEEcCCChhhH
Q 006047 133 LYDTLGAG-----------------------AVEFIICHSGVSIAFVEEKKIPEM 164 (663)
Q Consensus 133 l~~~~~~~-----------------------~l~~~l~~~~~~~vl~~~~~~~~~ 164 (663)
.. .++. .+...++..++.+++........+
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 43 3344 666688999999988876655444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 663 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-61 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-57 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-51 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-50 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-35 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 8e-20 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 5e-18 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 8e-16 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 5e-15 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 214 bits (545), Expect = 2e-61
Identities = 80/553 (14%), Positives = 164/553 (29%), Gaps = 91/553 (16%)
Query: 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+ ++ N + + ++ +Y+E++ V + N + G+++
Sbjct: 74 AANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDLGIKKGDV 130
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK------ 159
IY PE + M AC +G ++ AV I S + ++
Sbjct: 131 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGR 190
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
IP T V V +I+ W + ++ + +
Sbjct: 191 SIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAM- 249
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D I+YTSG+TG PKGV+ + + + A + D+Y +
Sbjct: 250 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD----YHPGDIYWCTADVGW 305
Query: 280 IFDRAIEEVF--ISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
+ ++ ++ GA + G + + + + + I P + +
Sbjct: 306 VTG-HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL---- 360
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ +G K +E + + +R++ S
Sbjct: 361 -------------------------MAEGDKAIEGTDRS--------------SLRILGS 381
Query: 393 GAAPLTPHV-ETFLRVV--ACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTVGPPVPNVD 448
P+ P E + + + V+ + TET LP + + G+ P V
Sbjct: 382 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQ 441
Query: 449 VCL-----ESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKE---VMVDGWFH 498
L G + + S + + ++ +
Sbjct: 442 PALVDNEGHPQEGAT--------EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493
Query: 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESF- 557
+GD DG I R ++ +S G + +E+ I V G
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 552
Query: 558 --LVAIVNPNKDA 568
+ A V N
Sbjct: 553 QAIYAYVTLNHGE 565
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 200 bits (510), Expect = 2e-57
Identities = 119/630 (18%), Positives = 209/630 (33%), Gaps = 119/630 (18%)
Query: 35 GFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN 93
FP+ + + WD A + + G+ TY EVY +++
Sbjct: 1 AFPSTMMDEELNLWDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMG 55
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+R GV + G N + A +G L + +I+ H+ +
Sbjct: 56 GLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 115
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ 213
+ P +L LKT+ F + + E Y A+ + +++ E
Sbjct: 116 LLFD----PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPER-- 169
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
C + YT+GTTG PKGV+ S+ +V + L+ +DV +
Sbjct: 170 ---------AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV---DGTALSEKDVVLP 217
Query: 274 YLPLAHIFDRAIEEVFISNGAAIGF--WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
+P+ H+ + GA R D L+E T VP V +
Sbjct: 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALAD- 276
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+ + ++ L R ++
Sbjct: 277 ---------------YLESTGHRLKTL-----------------------------RRLV 292
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----------MSMIGTVG 441
G + + + V QGYGLTET + +++ G
Sbjct: 293 VGGSAAPRSLIARFERMGV-EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 351
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
P+P V + + E GEV +KG + GYY E+ T+ + DG+F TG
Sbjct: 352 LPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 410
Query: 501 DIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG---NSFESF 557
DI W +G ++I DR K++ K S GE+++ +LEN + V ++
Sbjct: 411 DIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER 469
Query: 558 LVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAV 617
+A+V P + + L + + AK + + F + +
Sbjct: 470 PLAVVVPRGEKPTPEEL-------NEHLLK------------AGFAKWQLPDAYVFAEEI 510
Query: 618 HLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647
P T K + L + Y+
Sbjct: 511 ---P---------RTSAGKFLKRALREQYK 528
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 186 bits (472), Expect = 3e-51
Identities = 95/623 (15%), Positives = 186/623 (29%), Gaps = 101/623 (16%)
Query: 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERG 104
C++ + PN + + G+ TYKE+ + V +V + GV +
Sbjct: 61 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYSMGVRKGD 117
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI-----AFVEEK 159
+Y PE II + A + +G ++ + ++ I +
Sbjct: 118 TVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
K+ E + + + + + W + +
Sbjct: 178 KVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK-KYKTYYPCTPV 236
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D ++YTSG+TG PKGV S + EDV+ + +
Sbjct: 237 DSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTAGDIGW 292
Query: 280 IFDRAIEEVF--ISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
I V+ + G A + G + + I E K T F P L +
Sbjct: 293 ITG-HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL---- 347
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ G ++E + +R + S
Sbjct: 348 -------------------------KRAGDSYIENHSLK--------------SLRCLGS 368
Query: 393 GAAPLTPHV-ETFLRVVACA--HVLQGYGLTETCAGTFVSLPNEMSMI--GTVGPPVPNV 447
P+ V E + + ++ Y TE+ + L ++ + G+ P +
Sbjct: 369 VGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGI 428
Query: 448 DVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKEVMV---DGWFHTGDI 502
D + P + +S G + VK + + +K D + + G++ TGD
Sbjct: 429 DAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 487
Query: 503 GEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG---NSFESFLV 559
DG + I+ R ++ +S G ++ +E + V G + +
Sbjct: 488 AAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVA 546
Query: 560 AIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHL 619
A V + A ++ + K L + + K + +
Sbjct: 547 AFVVLKNKSSWSTATDDELQDIKKHLVFTVRK---------DIGPFAAPKLIILVDDL-- 595
Query: 620 EPVPFDIERDLLTPTYKKKRPQL 642
P T + K R L
Sbjct: 596 -P---------KTRSGKIMRRIL 608
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 182 bits (462), Expect = 1e-50
Identities = 108/541 (19%), Positives = 192/541 (35%), Gaps = 69/541 (12%)
Query: 37 PAPIPGME--SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNA 94
PAP +E + + A++R G D + TY E +++ +++ A
Sbjct: 8 PAPFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEA 63
Query: 95 IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154
++ G+ + + N ++ + + +G+ P D + + S ++
Sbjct: 64 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123
Query: 155 FVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQF 214
FV +K + ++L K K I+ SK + + + + L G N+
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYD 177
Query: 215 DLP--VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272
+P + I IM +SG+TG PKGV + + + + + ++ + +
Sbjct: 178 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDTAIL 235
Query: 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
S +P H F ++ G + + +L L + + K VP +
Sbjct: 236 SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK- 294
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+ Y NL +
Sbjct: 295 ---------------STLIDKYDLSNLH----------------------------EIAS 311
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451
GA E + + QGYGLTET + ++ P G VG VP + +
Sbjct: 312 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKV 370
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGS 510
+ + L RGE+CV+G + SGY + T ++ DGW H+GDI W D
Sbjct: 371 VDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 428
Query: 511 LKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG---NSFESFLVAIVNPNKD 567
I+DR K++ K +G VA LE+I I V G + A+V
Sbjct: 429 FFIVDRLKSLIK-YKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 487
Query: 568 A 568
Sbjct: 488 K 488
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 137 bits (346), Expect = 2e-35
Identities = 95/612 (15%), Positives = 183/612 (29%), Gaps = 118/612 (19%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ ++ R A R P++ L V + + T+ E+ V V + G+
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL----AVPARGLRL---THAELRARVEAVAARLHADGLRP 53
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + + N + +I + A + LG L L + + +I ++ A + +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ ++ + I + + P ++
Sbjct: 112 QVADAIFQSGSGARIIF------------------LGDLVRDGEPYSYGPPIEDPQREPA 153
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
I YTSGTTG PK ++ + + + V + +V + +PL H+
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVG 210
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
V ++ A G + + D +L L
Sbjct: 211 --FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD----------AL 258
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
+ S K +L R + A + V
Sbjct: 259 AAAAAHAGSSLKLDSL-----------------------------RHVTFAGATMPDAVL 289
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS----MIGTVGPPVPNVDVCLESVPEME 458
+ + YG TE ++ P + + V E V E
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGE 349
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKK 518
L + + F GY + T E + DGW+ T D+ W P+G+++I+ R
Sbjct: 350 EGEL-------IVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVD 402
Query: 519 NIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNPNKDALERWAAE 575
++ S GE + +E + + V V G + + + + A V P
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE------- 454
Query: 576 NGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVH-LEPVPFDIERDLLTPT 634
L + +L F+ K L+ +P
Sbjct: 455 -----------------TLSADALDTFCRSSELADFKRPKRYFILDQLP-------KNAL 490
Query: 635 YKKKRPQLLKHY 646
K R QL++
Sbjct: 491 NKVLRRQLVQQV 502
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 90.7 bits (224), Expect = 8e-20
Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 18/204 (8%)
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN 446
++ +++ + +P + + YG TET + + IG P
Sbjct: 279 IQTLITAGSATSP--SLVNKWKEKVTYINAYGPTETTICATTWVATKE-TIGHSVPIGAP 335
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHT 499
+ + + S GE+C+ G + GY+KR +LT + V + + T
Sbjct: 336 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395
Query: 500 GDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG---NSFES 556
GD W DG+++ + R N K+ G V +E +E+I I V + +
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQP 454
Query: 557 FLVAIVNPNK----DALERWAAEN 576
+L A K + L ++++E
Sbjct: 455 YLCAYFVSEKHIPLEQLRQFSSEE 478
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 85.3 bits (210), Expect = 5e-18
Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 39/206 (18%)
Query: 38 APIPGMESCWDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAI 95
A P ++ +F V + PNN + ++ TY E+ ++
Sbjct: 17 AEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQL-----------TYHELNVKANQLARIF 65
Query: 96 RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155
G+ + GI + IG+ A G VP+ +++I+ S +
Sbjct: 66 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 125
Query: 156 VEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFD 215
++ + + I+ G ++ +++ E
Sbjct: 126 TQKHLVHLI-------------------------HNIQFNGQVEIFEEDTIKIREGTNLH 160
Query: 216 LPVKKKNDICTIMYTSGTTGDPKGVM 241
+P K D+ ++YTSGTTG+PKG M
Sbjct: 161 VPS-KSTDLAYVIYTSGTTGNPKGTM 185
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 78.5 bits (192), Expect = 8e-16
Identities = 24/215 (11%), Positives = 72/215 (33%), Gaps = 21/215 (9%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
E+ D+ R + + R + + +Y+E+ ++ + G++++
Sbjct: 25 ETFGDLLRDRAAKYGD------RIAITCGNTHW---SYRELDTRADRLAAGFQKLGIQQK 75
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
+ + N E+ + A LG V + + + + + + + +
Sbjct: 76 DRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF 135
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
++ + + + V E L+ + LP K +D
Sbjct: 136 DYRSLARQVQSKLPTLKNIIVAGE------------AEEFLPLEDLHTEPVKLPEVKSSD 183
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ + + G+TG K + ++++ + + +
Sbjct: 184 VAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 75.8 bits (185), Expect = 5e-15
Identities = 47/263 (17%), Positives = 80/263 (30%), Gaps = 40/263 (15%)
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDV 449
+ G A + ++ V + Q +G+ E E ++ T G P+ D
Sbjct: 303 LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDE 362
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGDIGEWQPD 508
+ G + +G GYYK E+ + G++ TGDI D
Sbjct: 363 SRVWDDHDRD--VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420
Query: 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG---NSFESFLVAIVNPN 565
G + + R K+ GE VA E +EN A+ + + P
Sbjct: 421 GYIVVEGRAKDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR 479
Query: 566 KDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVH-LEPVPF 624
+A + EL +E+ L ++ V +E P
Sbjct: 480 DEAPK-------------------------AAELKAFLRERGLAAYKIPDRVEFVESFP- 513
Query: 625 DIERDLLTPTYKKKRPQLLKHYQ 647
T K + L +
Sbjct: 514 ------QTGVGKVSKKALREAIS 530
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 663 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=5.3e-72 Score=629.54 Aligned_cols=518 Identities=15% Similarity=0.207 Sum_probs=417.8
Q ss_pred CCH-HHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESC-WDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l-~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.|+ .++|.++++.+||++|+++. ....+..+++||+||.++++++|++|+++||++||+|+++++|++++++++||
T Consensus 71 ~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA 147 (643)
T d1pg4a_ 71 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 147 (643)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHH
Confidence 344 45677888999999999987 44455668999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh---------hHhh-cCCCcCCCCcEEEEecCCChhhHHHH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLK-TFPKTTEHLKTIVSFSKVKPEQREEI 192 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~-~~~~~~~~~~~ii~~~~~~~~~~~~~ 192 (663)
|+++|++++|+++.++.+++.++|++++++++|+++.... .... ........+..++++........
T Consensus 148 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--- 224 (643)
T d1pg4a_ 148 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 224 (643)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc---
Confidence 9999999999999999999999999999999999875321 1111 11223356777777765432110
Q ss_pred hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhh-hhhhhhhccccCCCCcEE
Q 006047 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVY 271 (663)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 271 (663)
........+....... .....+...+++++++|+|||||||.||||+++|++++..... ....+ +++++|++
T Consensus 225 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~ 297 (643)
T d1pg4a_ 225 -WQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY 297 (643)
T ss_dssp -CCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred -cccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEE
Confidence 0011123333333322 2334455668899999999999999999999999997655443 44444 78899999
Q ss_pred EEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 272 ~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
++.+|++|.+++.. ++.+|+.|++++++++ ++..+++.|+++++|+++++|+++..|++......
T Consensus 298 ~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~--------- 368 (643)
T d1pg4a_ 298 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--------- 368 (643)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT---------
T ss_pred EEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc---------
Confidence 99999999999876 6678999999999764 78899999999999999999999998865221110
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeeccccccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~ 422 (663)
+...+++||.+++||+++++++.+++.+.++ +++++.||+||+
T Consensus 369 ----------------------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~ 414 (643)
T d1pg4a_ 369 ----------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 414 (643)
T ss_dssp ----------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred ----------------------------------cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhc
Confidence 1112368999999999999999999998874 779999999999
Q ss_pred ccceeccCCCC-ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cCCc
Q 006047 423 CAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGW 496 (663)
Q Consensus 423 ~~~~~~~~~~~-~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~ 496 (663)
++.++...+.. ....+++|+|++|++++|+| +++.. ++.|+.|||+|+| |.++.||+++++.+.+.+ .+||
T Consensus 415 g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~--~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 491 (643)
T d1pg4a_ 415 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP--QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 491 (643)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB--CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred cceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCC--CCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCe
Confidence 88766654433 33468999999999999999 77654 4567999999999 568899999998777654 5899
Q ss_pred eecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHH
Q 006047 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWA 573 (663)
Q Consensus 497 ~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~ 573 (663)
|+|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|||+++++..
T Consensus 492 ~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~---- 566 (643)
T d1pg4a_ 492 YFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE---- 566 (643)
T ss_dssp EEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----
T ss_pred EEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCC----
Confidence 999999999999999999999999997 8999999999999999999999999997654 58999999987530
Q ss_pred HHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 574 AENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.++ .+.++|+++++ ++|+++++|+.|++++.. |+|++||++|++|++++...
T Consensus 567 -------------~~~----~~~~~i~~~~~-~~L~~~~vP~~i~~v~~l------P~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 567 -------------PSP----ELYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp -------------CCH----HHHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC
T ss_pred -------------CCH----HHHHHHHHHHH-hhCCcccCccEEEEECCC------CCCCCcCccHHHHHHHhcCC
Confidence 122 33445666666 689999999999999765 89999999999999998653
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.9e-71 Score=621.98 Aligned_cols=532 Identities=17% Similarity=0.184 Sum_probs=413.5
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
...++|.++++++||++|+++. ....+..+++||+||.++++++|++|+ ++||++||+|+|+++|++++++++|||
T Consensus 60 ~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~ 136 (640)
T d1ry2a_ 60 ACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI 136 (640)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHh
Confidence 3488899999999999999987 445566689999999999999999997 679999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh--------hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhc
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP--------EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~--------~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 195 (663)
+++|++++|+++.++.+++.++++++++++++++..... ............+.............. ...
T Consensus 137 ~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 213 (640)
T d1ry2a_ 137 SRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AFH 213 (640)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CCC
T ss_pred ccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---ccc
Confidence 999999999999999999999999999999999875321 111111122234444444433221100 000
Q ss_pred CcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhh-hhhhccccCCCCcEEEEc
Q 006047 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC-LLESVNEKLTSEDVYVSY 274 (663)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~-~~~~~~~~~~~~d~~~~~ 274 (663)
......+...... ........+..++++++++|||||||.||||+++|.+++........ .+ .+.++|++++.
T Consensus 214 ~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l~~ 287 (640)
T d1ry2a_ 214 APRDLDWATEKKK-YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFTA 287 (640)
T ss_dssp SSSEEEHHHHHTT-SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEEC
T ss_pred ccccccccccccc-cccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCcccceeec
Confidence 1112222222222 22234445567889999999999999999999999998877655433 33 68899999999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 006047 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (663)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (663)
+|++|..|+.. ++.+++.|+++++++. ++..+++.|+++++|+++++|+++..|.+.....
T Consensus 288 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 354 (640)
T d1ry2a_ 288 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY------------- 354 (640)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS-------------
T ss_pred cchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccc-------------
Confidence 99999999865 6778999999988764 6889999999999999999999998874311000
Q ss_pred HHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeecccccccccc
Q 006047 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCAG 425 (663)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~~ 425 (663)
.+...+++||.+++||+++++++.+++++.+| ..+++.||+||++..
T Consensus 355 ------------------------------~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~ 404 (640)
T d1ry2a_ 355 ------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 404 (640)
T ss_dssp ------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred ------------------------------cccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccc
Confidence 00112268999999999999999999999885 569999999999887
Q ss_pred eeccCCCCc--cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cCCcee
Q 006047 426 TFVSLPNEM--SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWFH 498 (663)
Q Consensus 426 ~~~~~~~~~--~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~~~ 498 (663)
+........ ..++++|.|+++++++|+| +++.....+.+..|||++++ |+++.||+++++.+.+.| .+|||+
T Consensus 405 ~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~ 483 (640)
T d1ry2a_ 405 LVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF 483 (640)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEE
T ss_pred cccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEE
Confidence 666554432 3468999999999999999 77766666667789999998 689999999999988876 458999
Q ss_pred cCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHH
Q 006047 499 TGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAE 575 (663)
Q Consensus 499 TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~ 575 (663)
|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++++.....
T Consensus 484 TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~--- 559 (640)
T d1ry2a_ 484 TGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST--- 559 (640)
T ss_dssp EEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----------
T ss_pred cCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccc---
Confidence 9999999999999999999999996 8999999999999999999999999997754 68999999988652110
Q ss_pred cCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHh
Q 006047 576 NGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVF 654 (663)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~ 654 (663)
..++..+.+.++|.++++ ++|++|++|+.|++++.. |+|++|||+|++||+++....+.+.
T Consensus 560 -----------~~~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~Lr~~~~~~~~~~~ 620 (640)
T d1ry2a_ 560 -----------ATDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAGESDQLG 620 (640)
T ss_dssp ----------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC-------
T ss_pred -----------cchHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeCCC------CCCCCcCccHHHHHHHHhCCccccC
Confidence 011112345566777776 689999999999999765 8999999999999999877655554
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.2e-70 Score=606.41 Aligned_cols=511 Identities=22% Similarity=0.289 Sum_probs=391.4
Q ss_pred CCCCC-CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch
Q 006047 36 FPAPI-PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (663)
Q Consensus 36 ~~~~~-~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~ 114 (663)
||++- .+..||+++|+++|+++||++|+++. + +++++++||+||.+++.++|++|.+.|+++||+|+++++|++
T Consensus 2 ~p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~ 76 (534)
T d1v25a_ 2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF 76 (534)
T ss_dssp CBCCBCCCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred CCCccCCCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCH
Confidence 45442 33458999999999999999999876 3 456688999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhh
Q 006047 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (663)
Q Consensus 115 ~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 194 (663)
++++++|||+++|++++|++|.++.+++.++|+.+++++++++.............. ..++.++.........
T Consensus 77 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------ 149 (534)
T d1v25a_ 77 RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMDEKAPEG------ 149 (534)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGC-SSCCEEEESSSCCCTT------
T ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcc-cccceeEEeecccccc------
Confidence 999999999999999999999999999999999999999999998777665554433 4555666554432210
Q ss_pred cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEc
Q 006047 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (663)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~ 274 (663)
..... . ............++++++++|||||||.||+|.++|.+++.......... ......++++++.
T Consensus 150 ----~~~~~-~---~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~ 218 (534)
T d1v25a_ 150 ----YLAYE-E---ALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPV 218 (534)
T ss_dssp ----CEEHH-H---HCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEEC
T ss_pred ----ccccc-c---cccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccc
Confidence 01111 0 11122334456789999999999999999999999999987665433322 2256789999999
Q ss_pred CChhhHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006047 275 LPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (663)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (663)
+|++|.+++...+..+..|+++++... ++..+...+.++++|+++++|.++..++.......
T Consensus 219 ~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~---------------- 282 (534)
T d1v25a_ 219 VPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------- 282 (534)
T ss_dssp SCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------
T ss_pred cchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc----------------
Confidence 999999999888888778887777654 89999999999999999999999998876543321
Q ss_pred hhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCC
Q 006047 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (663)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~ 432 (663)
...++||.+++||+++++...+++++ ++..+++.||+||++..+......
T Consensus 283 -----------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~ 332 (534)
T d1v25a_ 283 -----------------------------HRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVK 332 (534)
T ss_dssp -----------------------------CCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCC
T ss_pred -----------------------------ccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccC
Confidence 12268999999999999999999886 599999999999999887765433
Q ss_pred Cc----------cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCc
Q 006047 433 EM----------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGD 501 (663)
Q Consensus 433 ~~----------~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD 501 (663)
.. ....++|+|++|++++|+| +++...+.+.++.|||+|+|++++.||+++++.+...| .||||+|||
T Consensus 333 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGD 411 (534)
T d1v25a_ 333 SHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 411 (534)
T ss_dssp GGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEE
T ss_pred ccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCc
Confidence 21 1246899999999999999 88888888888999999999999999999999999888 899999999
Q ss_pred EEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCC
Q 006047 502 IGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGV 578 (663)
Q Consensus 502 lg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~ 578 (663)
+|++++||++++.||.+|+|++ +|++|+|.+||++|.+||+|++|+|++.+++ +.++|+|+++.+...
T Consensus 412 lg~~~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~-------- 482 (534)
T d1v25a_ 412 IAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT-------- 482 (534)
T ss_dssp EEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------
T ss_pred eeEECCCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCC--------
Confidence 9999999999999999999996 8999999999999999999999999997654 578999988764310
Q ss_pred CCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 579 NGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.+. .++.+++ ..|++|++|..|+++++. |+|++|||+|++||++|++
T Consensus 483 -------------~~~---~~~~~~~-~~l~~~~~P~~i~~~~~l------P~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 483 -------------PEE---LNEHLLK-AGFAKWQLPDAYVFAEEI------PRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp ----------------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred -------------HHH---HHHHHHH-hcCCcCCCccEEEEECCC------CCCCCccccHHHHHHHHHh
Confidence 011 1122233 689999999999988665 8999999999999998854
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.5e-68 Score=592.54 Aligned_cols=516 Identities=20% Similarity=0.267 Sum_probs=399.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhC---CCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 006047 35 GFPAPIPGMESCWDVFRMAVERN---PNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV 111 (663)
Q Consensus 35 ~~~~~~~~~~~l~~~l~~~a~~~---Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~ 111 (663)
+.|..|....+++++|.++++++ |+++|+++. .. + +++||+||++++.++|++|+++||++||+|+|+++
T Consensus 8 p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~--~--~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ 80 (541)
T d1lcia_ 8 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HI--E--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 80 (541)
T ss_dssp CCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CC--C--eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeC
Confidence 44455566789999999999988 555555432 11 1 57999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHH
Q 006047 112 NCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191 (663)
Q Consensus 112 n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 191 (663)
|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+..... +..+.+++++.....
T Consensus 81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 155 (541)
T d1lcia_ 81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY---- 155 (541)
T ss_dssp SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB----
T ss_pred CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccc-cccceeeeecCCccc----
Confidence 999999999999999999999999999999999999999999999998877766655433 566777776554321
Q ss_pred HhhcCcEEEeHHHHHhcccc------cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccC
Q 006047 192 IEKYGLAVYSWDEFLQLGEN------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (663)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~ 265 (663)
..+.++......... ...+.....++++++++|||||||.||+|.+||++++.........+. ....
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~ 228 (541)
T d1lcia_ 156 -----QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQI 228 (541)
T ss_dssp -----TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCC
T ss_pred -----cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--cccc
Confidence 112334444332211 112233456688999999999999999999999999887776544331 1256
Q ss_pred CCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHH
Q 006047 266 TSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344 (663)
Q Consensus 266 ~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~ 344 (663)
.+++++++.+|++|..++...+..+..++.++.... +.......+.++++|.++.+|..+..++......
T Consensus 229 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~--------- 299 (541)
T d1lcia_ 229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID--------- 299 (541)
T ss_dssp CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG---------
T ss_pred cccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccccc---------
Confidence 789999999999999999888888888888877765 8999999999999999999999998876522111
Q ss_pred HHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCC-ceeecccccccc
Q 006047 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETC 423 (663)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~ 423 (663)
....++++.+++||+++++...+.+.+.++. .+++.||+||++
T Consensus 300 ------------------------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 343 (541)
T d1lcia_ 300 ------------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 343 (541)
T ss_dssp ------------------------------------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGS
T ss_pred ------------------------------------ccccccceEEEecccccccccccccccccCCceeeecCCccccC
Confidence 0112589999999999999999999988864 688999999999
Q ss_pred cceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcE
Q 006047 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDI 502 (663)
Q Consensus 424 ~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl 502 (663)
+.++....... ..+++|+|+|+++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+...+ .+|||+|||+
T Consensus 344 ~~~~~~~~~~~-~~~svG~p~~~~~~~i~d~d~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl 420 (541)
T d1lcia_ 344 SAILITPEGDD-KPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI 420 (541)
T ss_dssp SCSEECCCC----CCCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEE
T ss_pred ceEEecCcccC-CCCccccccCCCEEEEEECCCC--cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCe
Confidence 88777665544 3489999999999999994333 456678999999999999999999998888777 6899999999
Q ss_pred EEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCC
Q 006047 503 GEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVN 579 (663)
Q Consensus 503 g~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~ 579 (663)
|+++++|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .
T Consensus 421 ~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~----------~ 489 (541)
T d1lcia_ 421 AYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK----------T 489 (541)
T ss_dssp EEECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C
T ss_pred eEEcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC----------C
Confidence 999999999999999999997 8999999999999999999999999987543 5889999987642 0
Q ss_pred CChhhhhcChHHHHHHHHHHHHHHHHcCCCCc-cceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 580 GDFKSLCENPKAKEFILGELSRVAKEKKLKGF-EFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~-~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.+ .++|+++++ .+|+++ +.|+.|++++.. |+|++|||+|++|++++.+.
T Consensus 490 -------~~-------~~~l~~~~~-~~l~~~~~~p~~i~~v~~l------P~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 490 -------MT-------EKEIVDYVA-SQVTTAKKLRGGVVFVDEV------PKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp -------CC-------HHHHHHHHH-HHSCGGGSCTTEEEEESSC------CC-----CCHHHHHHHHHHH
T ss_pred -------CC-------HHHHHHHHH-HhCCccccCCcEEEEeCCC------CcCCCcCccHHHHHHHHHHh
Confidence 01 123444555 456665 468889988665 89999999999999998653
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.3e-64 Score=559.92 Aligned_cols=499 Identities=17% Similarity=0.198 Sum_probs=406.5
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.||.++|+++|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 68999999999999999999864 3 67999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh----cCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK----TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~----~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
+++|++++|++|.++.+++.++|+.++++++++++........ ........+...+....... .
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence 9999999999999999999999999999999998753321111 00011122223333222111 1
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
.++.++ .......+...++++++++|||||||.||+|++||.++...+......+ ++.+++++++..|++|
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (536)
T ss_dssp EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence 111111 1223344567889999999999999999999999999999999988877 8999999999999999
Q ss_pred HHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 280 IFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 280 ~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
.+++.. ....+..|.+++..+. ++..+...+++++++.+..+|..+..+........
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 294 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------- 294 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc--------------------
Confidence 999864 3444556777776665 99999999999999999999999988765432211
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccc
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~ 436 (663)
...++++.+++||+++++...+++.+.++......|+.+|.+.............
T Consensus 295 -------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (536)
T d1mdba_ 295 -------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII 349 (536)
T ss_dssp -------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred -------------------------cccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence 1125799999999999999999999999999999999999887666665554445
Q ss_pred cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEee
Q 006047 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 437 ~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
.+++|.|+++....++..+++. +++.++.|||+++|+.++.||++++..+...+ .+|||+|||++++++||+|++.|
T Consensus 350 ~~~~g~p~~~~~~~~v~~~~g~--~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G 427 (536)
T d1mdba_ 350 VNTQGKPMSPYDESRVWDDHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG 427 (536)
T ss_dssp HHCCCEESSTTCEEEEECTTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cCCcccCCCCcceEEEEcCCCC--eecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence 5889999876555555425554 55667999999999999999999998888877 77999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|+|++ +|++|+|.+||++|.+||+|++|+|++.+++ +.++|+|++.++. ..
T Consensus 428 R~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~------------------~~---- 484 (536)
T d1mdba_ 428 RAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA------------------PK---- 484 (536)
T ss_dssp EGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC------------------CC----
T ss_pred CcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCC------------------CC----
Confidence 99999996 8999999999999999999999999996543 5789999987642 11
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
.++|+++++++.|++|++|+.|+++++. |+|++|||+|++|+++|++++.
T Consensus 485 ---~~~l~~~l~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~l~ 534 (536)
T d1mdba_ 485 ---AAELKAFLRERGLAAYKIPDRVEFVESF------PQTGVGKVSKKALREAISEKLL 534 (536)
T ss_dssp ---HHHHHHHHHHTTCCGGGSCSEEEECSSC------CBCTTSCBCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCcCcCccEEEEECCC------CcCCCcCccHHHHHHHHHHHHh
Confidence 1335555554569999999999999765 8999999999999999988764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.6e-64 Score=556.49 Aligned_cols=476 Identities=19% Similarity=0.244 Sum_probs=392.3
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHH
Q 006047 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (663)
Q Consensus 39 ~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (663)
.-|...||.++|+++|+++||++|+++. + +++||+||.++++++|.+|.++|+++||+|+++++|++++++
T Consensus 18 ~~~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~ 88 (514)
T d1amua_ 18 EYPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFI 88 (514)
T ss_dssp CCCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHH
Confidence 3456789999999999999999999874 2 679999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 119 ~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
++|||+++|++++|+++.++.+++.++++.++++++|++......+....... ........
T Consensus 89 ~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~-------------- 149 (514)
T d1amua_ 89 GILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEED-------------- 149 (514)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCS--------------
T ss_pred HHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----cccccccc--------------
Confidence 99999999999999999999999999999999999999988776654443221 11111111
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
............+..++++++++|||||||.||+|.+||.++..........+ ....++++++..|++
T Consensus 150 -------~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 217 (514)
T d1amua_ 150 -------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASIS 217 (514)
T ss_dssp -------TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTT
T ss_pred -------cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccc
Confidence 11111122333445788999999999999999999999999999999988777 889999999999999
Q ss_pred hHHHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 006047 279 HIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (663)
Q Consensus 279 ~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
|.+++..++.++..|+++++... +...+.+.+..+.++.+..+|.......
T Consensus 218 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 272 (514)
T d1amua_ 218 FDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD------------------------- 272 (514)
T ss_dssp STHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC-------------------------
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc-------------------------
Confidence 99999998889999999888653 6788889999999999999887544310
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCc
Q 006047 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (663)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (663)
...+++++.+++||+++++++.+++.+ +..+++.||+||++.++........
T Consensus 273 --------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~ 324 (514)
T d1amua_ 273 --------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKE 324 (514)
T ss_dssp --------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSS
T ss_pred --------------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecccccc
Confidence 011258999999999999999877765 7899999999999987665544332
Q ss_pred --cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-------cCCceecCcEEEE
Q 006047 435 --SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-------VDGWFHTGDIGEW 505 (663)
Q Consensus 435 --~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-------~~g~~~TGDlg~~ 505 (663)
....+.|.+.++..+.+.| +++. +++.|+.|||+|+||.++.||++++..+.+.| .+|||+|||+|++
T Consensus 325 ~~~~~~~~~~~~~~~~v~~~d-~~~~--~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~ 401 (514)
T d1amua_ 325 TIGHSVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW 401 (514)
T ss_dssp CCCSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEE
T ss_pred ccCcccccccceeeeeEeeec-ccce--ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEE
Confidence 2246778999999999998 5555 44567999999999999999999999887776 2679999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
|+||+|++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++.
T Consensus 402 d~~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~-------------- 466 (514)
T d1amua_ 402 LSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-------------- 466 (514)
T ss_dssp CTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC--------------
T ss_pred CCCCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC--------------
Confidence 999999999999999997 8999999999999999999999999997654 5899999887642
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 583 KSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
. .++|+++++ ..|++|++|..|++++.. |+|++|||+|++|++
T Consensus 467 ----~--------~~~l~~~~~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 467 ----P--------LEQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPE 509 (514)
T ss_dssp ----C--------HHHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCC
T ss_pred ----C--------HHHHHHHHH-hhCCcccCceEEEEeCCC------CCCCCcChhHHhcCC
Confidence 1 133445555 579999999999998765 899999999999976
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1e-61 Score=531.40 Aligned_cols=492 Identities=19% Similarity=0.224 Sum_probs=394.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
++||+++|+++|+++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 589999999999999999999986 433 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++.++++.++++++|++............ .....++. +
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~i~---------------------~ 129 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS---GSGARIIF---------------------L 129 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHT---TCCCEEEE---------------------H
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhh---cccccccc---------------------c
Confidence 99999999999999999999999999999999988764321111111 12223332 2
Q ss_pred HHHHhccc----ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 203 DEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 203 ~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
.++..... ..........++++++++|||||||.||+|.++|.++...+......+ .......+++++.+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~ 206 (503)
T d3cw9a1 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY 206 (503)
T ss_dssp HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence 33332221 122334456789999999999999999999999999999988866544 22456778999999998
Q ss_pred hHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 279 HIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
|..+... .+.+...++++++.+. ++..+...+.+++++.++.+|..+..+..........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 268 (503)
T d3cw9a1 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------ 268 (503)
T ss_dssp SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence 8887765 5666777777777665 9999999999999999999999998876543322111
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccc
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~ 436 (663)
...++||.+++||++++++....+...++..+.+.||++|++..+..........
T Consensus 269 -------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~ 323 (503)
T d3cw9a1 269 -------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE 323 (503)
T ss_dssp -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred -------------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence 1125899999999999999999999999999999999999988777665544433
Q ss_pred cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccC-cccccccCChhhhhccccCCceecCcEEEEcCCCcEEEee
Q 006047 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 437 ~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~-~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
...+.+.+.....+.+ ..+ ..++.|+.|++.+.+. ....+|++++..+.+.|.+|||+|||+|++++||.|+++|
T Consensus 324 -~~~~~~~~~~~~~~~~-~~~--~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G 399 (503)
T d3cw9a1 324 -MAPGFFSEVRIVRIGG-GVD--EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG 399 (503)
T ss_dssp -EBCCTTCCEEEECTTS-CTT--CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred -ccccccccceeeeeec-ccC--cccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence 3444444444444433 333 3455678998877764 6667788999999999999999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
|.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++.+. ..
T Consensus 400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------------------~~-- 456 (503)
T d3cw9a1 400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------------------TL-- 456 (503)
T ss_dssp ESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------------------CC--
T ss_pred CcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCC--------------------CC--
Confidence 99999997 8999999999999999999999999997654 5899999987642 00
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
..++|++++++..|+.|++|+.|+++++. |+|++|||+|++|++++
T Consensus 457 --~~~~l~~~~~~~~l~~~~~P~~i~~v~~~------P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 457 --SADALDTFCRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQV 502 (503)
T ss_dssp --CHHHHHHHHHHSSSCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHH
T ss_pred --CHHHHHHHHHhcCCCCCCCccEEEEECCC------CcCCCcCccHHHHHHhc
Confidence 12345556655789999999999998765 89999999999999875
|