Citrus Sinensis ID: 006048

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660---
MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
cccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHcccccHHHHHHccccEEccccccccccccEEEEEEcccHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHcccccccccccEEccccEEEcccccEEEccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccHHHHHHHccccccccccccccHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHcccccccccccccc
ccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHccHHHHHHcccEEEEcccccccccccccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHccEEccccEEEccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHEEHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHEHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccccccccccccc
msysdsdsssyggdyknfKQISRERLLYEMLRSAktgtskstWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIhrrrqplpsmeaiyfiqpTKENVIMFLsdmsgrsplyKKAFVFFSSPISRELVTHikkdstvlprigaLREMNLeyfaidsqgfvtdDERALEELfgdeensrrgdACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSienfpqtetcdllildrsvdqvapIIHEWTYDAICRDLLNMEgnkyvhevpsktggppekkevllEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHsardggelsTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFttnedvsrENKLRLLMILAAIypekfqgekgQNIMKLARLqsdditavnnmrllggasdikksstgafslkfdinkkravrkdrtgeeqtwqLSRFYPMIEELIEKLgkrelpkddypcmnepsptvhaknqsaaisqppvahsmrsrrtptwarprnsddgyssdsvLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIilgstslddppqfITKMKMLtvdelslddiqi
msysdsdsssyggdyknfkQISRERLLYEMLRsaktgtskstwkvLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRElvthikkdstvlpRIGALREMNLEYFAIDSQGFVTDDERALEElfgdeensrrgDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVhevpsktggppeKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFfttnedvsrenKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLggasdikksstgafslkfdinkkravrkdrtgeeqtwqlsrfyPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAisqppvahsmrsrrtptwarprnsddgyssDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKlnreiilgstslddppqfITKMKMltvdelslddiqi
MsysdsdsssyggdyKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIrelrlrelgqleqdlVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
*******************QISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELF********GDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVH***************LLEEHDPLWLELRHAHIA*******************************************LPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGA*********AFSLKFDIN*************QTWQLSRFYPMIEELIEKL**********************************************************************KMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTV**********
*******************QISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWN****************TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKY*******************EEHDPLWLELRHAHIADASERLHEKMTSF***********************LQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLL************************************WQLSRFYPMIEELIEKLGKRELPKDDYPCMNEP************************************************************FVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK**************
************GDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHE*********EKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFIS*****************STKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKRA*********QTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPS*******************************************VLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
*************DYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQ*******ELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDI**************************EEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPS*****************************************************KMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLD*I**
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MSYSDSDSSSYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query663 2.2.26 [Sep-21-2011]
Q9C5X3666 SNARE-interacting protein yes no 0.981 0.977 0.813 0.0
Q9SZ77662 Protein transport Sec1b O no no 0.974 0.975 0.705 0.0
Q7XWP3665 Probable protein transpor yes no 0.992 0.989 0.683 0.0
Q9C5P7673 Protein transport Sec1a O no no 0.947 0.933 0.680 0.0
Q5VNU3659 Probable protein transpor yes no 0.978 0.984 0.608 0.0
Q54QC8598 Protein transport protein yes no 0.865 0.959 0.298 5e-70
Q64324593 Syntaxin-binding protein yes no 0.846 0.946 0.294 5e-70
Q15833593 Syntaxin-binding protein yes no 0.853 0.954 0.294 9e-69
Q28288593 Syntaxin-binding protein yes no 0.858 0.959 0.289 5e-68
Q62753594 Syntaxin-binding protein yes no 0.861 0.961 0.293 6e-68
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function desciption
 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/658 (81%), Positives = 601/658 (91%), Gaps = 7/658 (1%)

Query: 11  YGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGV 70
           +GG+YKNF+QI+RERLLYEMLRSAKTG+SKSTWKVLIMDKLTVKIMS++CKMADITQEGV
Sbjct: 11  HGGEYKNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGV 70

Query: 71  SLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVT 130
           SLVEDI RRRQPLPSM+AIYFIQPTKENVIMFLSDMSG+SPLYKKAFVFFSSP+S+ELV 
Sbjct: 71  SLVEDIFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVG 130

Query: 131 HIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMAS 190
           HIKKDS+VLPRIGALREMNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMAS
Sbjct: 131 HIKKDSSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMAS 190

Query: 191 RIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQT 250
           RIATVFASLREFP VRYRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQT
Sbjct: 191 RIATVFASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQT 250

Query: 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEE 310
           ETC+LLILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEE
Sbjct: 251 ETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEE 310

Query: 311 HDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQ 370
           HDP+WLELRHAHIADASERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQ
Sbjct: 311 HDPIWLELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQ 369

Query: 371 YSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRE 430
           YS+QIDKLSLHVEIA K+N +IRE  LRELGQLEQDLVFGDAG+KDV+K+ +T E+ SRE
Sbjct: 370 YSEQIDKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASRE 429

Query: 431 NKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFS 490
            KLRLLMILA IYPEKF+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+
Sbjct: 430 GKLRLLMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFT 489

Query: 491 LKFDIN-KKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVH 549
           LKFD++ KKRAVRK+R  EE  WQLSRFYPMIEELIEKL K ELPK+D+PCMN+PSP+ H
Sbjct: 490 LKFDLHKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFH 548

Query: 550 A---KNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFV 606
                + +A+ SQ   A SMRSRRTPTWA+PR SDDGYSSDSVLRHASSDF+KMGQRIFV
Sbjct: 549 GSTSLSSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFV 608

Query: 607 FIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTV-DELSLDDIQI 663
           FIVGGATRSEL+VCHKL+ KL RE+ILGSTSLDDPPQFITK+K+LT  D+LSLDD+QI
Sbjct: 609 FIVGGATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q62753|STXB2_RAT Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query663
224071599666 predicted protein [Populus trichocarpa] 0.986 0.981 0.832 0.0
224125086666 predicted protein [Populus trichocarpa] 0.978 0.974 0.843 0.0
225448938753 PREDICTED: SNARE-interacting protein KEU 0.998 0.879 0.807 0.0
356514152665 PREDICTED: SNARE-interacting protein KEU 0.984 0.981 0.799 0.0
356563274666 PREDICTED: SNARE-interacting protein KEU 0.984 0.980 0.795 0.0
357477033666 SNARE-interacting protein KEULE [Medicag 0.983 0.978 0.8 0.0
297844098665 hypothetical protein ARALYDRAFT_471384 [ 0.981 0.978 0.809 0.0
449442403664 PREDICTED: SNARE-interacting protein KEU 1.0 0.998 0.811 0.0
356563276671 PREDICTED: SNARE-interacting protein KEU 0.984 0.973 0.789 0.0
255537107663 plant sec1, putative [Ricinus communis] 0.975 0.975 0.814 0.0
>gi|224071599|ref|XP_002303535.1| predicted protein [Populus trichocarpa] gi|222840967|gb|EEE78514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1160 bits (3001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/656 (83%), Positives = 607/656 (92%), Gaps = 2/656 (0%)

Query: 10  SYGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEG 69
           +YGGDY+NF+QISRERLL+EMLRSAKTG SKSTWKVLIMD+LTVKIMS+SCKMADITQEG
Sbjct: 11  AYGGDYRNFRQISRERLLHEMLRSAKTGNSKSTWKVLIMDRLTVKIMSYSCKMADITQEG 70

Query: 70  VSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELV 129
           VSLVEDI+RRRQPLPSM+AIYFIQPTKENVIMFLSDM+G+SPLYKKAFVFFSSPISRELV
Sbjct: 71  VSLVEDIYRRRQPLPSMDAIYFIQPTKENVIMFLSDMAGKSPLYKKAFVFFSSPISRELV 130

Query: 130 THIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMA 189
           +HIKKDS+VL RIGALREMNLEYFAIDSQGF+TD+ERALEELFGD+E+S +GDACLNVMA
Sbjct: 131 SHIKKDSSVLTRIGALREMNLEYFAIDSQGFITDNERALEELFGDDEDSHKGDACLNVMA 190

Query: 190 SRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ 249
           SRIATVFASLREFP VR+RAA+SLD  TMTT  DLIPTKLAA +W+ L +YKQ IENFPQ
Sbjct: 191 SRIATVFASLREFPFVRFRAARSLDVTTMTTSRDLIPTKLAARIWDSLTQYKQKIENFPQ 250

Query: 250 TETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLE 309
           TETC+LLILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVHEVP K GGPPEKKEVLLE
Sbjct: 251 TETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKAGGPPEKKEVLLE 310

Query: 310 EHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALP 369
           EHDP+WLELRHAHIA ASERLHEKMT+F+SKNKAA+IQH +RDGGELST+DLQ+MVQALP
Sbjct: 311 EHDPVWLELRHAHIAFASERLHEKMTNFVSKNKAAKIQHGSRDGGELSTRDLQQMVQALP 370

Query: 370 QYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSR 429
           QYS+QIDKLSLHVEIAGKIN+IIREL LRELGQLEQDLVFGDAG+KDV+KF T  ED +R
Sbjct: 371 QYSEQIDKLSLHVEIAGKINRIIRELGLRELGQLEQDLVFGDAGMKDVIKFLTMKEDTTR 430

Query: 430 ENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAF 489
           ENKLRLLMILAA++PEK +GE+G NIMKLARL  DD+ AVNNMRLL GASD KK STGAF
Sbjct: 431 ENKLRLLMILAAVFPEKLEGERGLNIMKLARLPQDDMNAVNNMRLLAGASDTKKRSTGAF 490

Query: 490 SLKFDIN-KKRAVRKDRTGEEQ-TWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPT 547
           SLKFDI+ KKRA RKDRTGEE+ TWQLSRFYPMIEELI+KL K EL KD+YPCMN+PSP+
Sbjct: 491 SLKFDIHKKKRAARKDRTGEEETTWQLSRFYPMIEELIDKLNKGELSKDEYPCMNDPSPS 550

Query: 548 VHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVF 607
            H  +QS  +   P  HSMRS+RTPTWARPRNSDDGYSSDS+LRHASSDFKKMGQRIFVF
Sbjct: 551 FHGTSQSTPMHHVPAPHSMRSKRTPTWARPRNSDDGYSSDSILRHASSDFKKMGQRIFVF 610

Query: 608 IVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI 663
           IVGGATRSELRVCHKLT KL RE+ILGS+SLDDPPQF+TK+K+LT +ELSLDD+QI
Sbjct: 611 IVGGATRSELRVCHKLTSKLQREVILGSSSLDDPPQFMTKLKLLTANELSLDDLQI 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125086|ref|XP_002329890.1| predicted protein [Populus trichocarpa] gi|222871127|gb|EEF08258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448938|ref|XP_002272338.1| PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356514152|ref|XP_003525770.1| PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] Back     alignment and taxonomy information
>gi|356563274|ref|XP_003549889.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|357477033|ref|XP_003608802.1| SNARE-interacting protein KEULE [Medicago truncatula] gi|355509857|gb|AES90999.1| SNARE-interacting protein KEULE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297844098|ref|XP_002889930.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] gi|297335772|gb|EFH66189.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449442403|ref|XP_004138971.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] gi|449505029|ref|XP_004162356.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563276|ref|XP_003549890.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255537107|ref|XP_002509620.1| plant sec1, putative [Ricinus communis] gi|223549519|gb|EEF51007.1| plant sec1, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query663
TAIR|locus:2034670666 KEU "keule" [Arabidopsis thali 0.974 0.969 0.794 2.5e-280
TAIR|locus:2118126662 SEC1B [Arabidopsis thaliana (t 0.971 0.972 0.689 2.2e-240
TAIR|locus:2025482673 SEC1A "secretory 1A" [Arabidop 0.950 0.936 0.658 3.6e-231
UNIPROTKB|F1P3H1592 STXBP3 "Uncharacterized protei 0.455 0.510 0.341 2.2e-69
UNIPROTKB|E7EQD5604 STXBP2 "Syntaxin-binding prote 0.737 0.809 0.297 5.4e-63
UNIPROTKB|O00186592 STXBP3 "Syntaxin-binding prote 0.487 0.545 0.322 4.6e-59
MGI|MGI:107370593 Stxbp2 "syntaxin binding prote 0.656 0.733 0.301 7.8e-58
UNIPROTKB|Q5RE92593 DKFZp469D0239 "Putative unchar 0.650 0.726 0.301 7.8e-58
UNIPROTKB|Q28288593 STXBP2 "Syntaxin-binding prote 0.656 0.733 0.295 7.8e-58
RGD|619967594 Stxbp2 "syntaxin binding prote 0.656 0.732 0.301 7.8e-58
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2694 (953.4 bits), Expect = 2.5e-280, P = 2.5e-280
 Identities = 519/653 (79%), Positives = 583/653 (89%)

Query:    16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVED 75
             KNF+QI+RERLLYEMLRSAKTG+SKSTWKVLIMDKLTVKIMS++CKMADITQEGVSLVED
Sbjct:    16 KNFRQITRERLLYEMLRSAKTGSSKSTWKVLIMDKLTVKIMSYACKMADITQEGVSLVED 75

Query:    76 IHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKD 135
             I RRRQPLPSM+AIYFIQPTKENVIMFLSDMSG+SPLYKKAFVFFSSP+S+ELV HIKKD
Sbjct:    76 IFRRRQPLPSMDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKD 135

Query:   136 STVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATV 195
             S+VLPRIGALREMNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMASRIATV
Sbjct:   136 SSVLPRIGALREMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATV 195

Query:   196 FASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDL 255
             FASLREFP VRYRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQTETC+L
Sbjct:   196 FASLREFPAVRYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCEL 255

Query:   256 LILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLW 315
             LILDRS+DQ+AP+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEEHDP+W
Sbjct:   256 LILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIW 315

Query:   316 LELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQI 375
             LELRHAHIADASERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQYS+QI
Sbjct:   316 LELRHAHIADASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQI 374

Query:   376 DKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRL 435
             DKLSLHVEIA K+N +I               VFGDAG+KDV+K+ +T E+ SRE KLRL
Sbjct:   375 DKLSLHVEIARKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRL 434

Query:   436 LMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDI 495
             LMILA IYPEKF+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+LKFD+
Sbjct:   435 LMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDL 494

Query:   496 NKK-RAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAK--- 551
             +KK RAVRK+R  EE  WQLSRFYPMIEELIEKL K ELPK+D+PCMN+PSP+ H     
Sbjct:   495 HKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSL 553

Query:   552 NQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGG 611
             + +A+ SQ   A SMRSRRTPTWA+PR SDDGYSSDSVLRHASSDF+KMGQRIFVFIVGG
Sbjct:   554 SSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGG 613

Query:   612 ATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTV-DELSLDDIQI 663
             ATRSEL+VCHKL+ KL RE+ILGSTSLDDPPQFITK+K+LT  D+LSLDD+QI
Sbjct:   614 ATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000910 "cytokinesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3H1 STXBP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQD5 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O00186 STXBP3 "Syntaxin-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107370 Stxbp2 "syntaxin binding protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RE92 DKFZp469D0239 "Putative uncharacterized protein DKFZp469D0239" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q28288 STXBP2 "Syntaxin-binding protein 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|619967 Stxbp2 "syntaxin binding protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q07327ROP_DROMENo assigned EC number0.30250.82650.9179yesno
Q9SZ77SEC1B_ARATHNo assigned EC number0.70590.97430.9758nono
Q7XWP3SEC1A_ORYSJNo assigned EC number0.68350.99240.9894yesno
Q5VNU3SEC1B_ORYSJNo assigned EC number0.60880.97880.9848yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.81300.98190.9774yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
pfam00995554 pfam00995, Sec1, Sec1 family 1e-144
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 4e-57
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  430 bits (1107), Expect = e-144
 Identities = 173/611 (28%), Positives = 309/611 (50%), Gaps = 62/611 (10%)

Query: 43  WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMF 102
           WKVL++DK T KI+S    ++D+ + GV+LVE+I  +R+PLP + AIYFI+PT+ENV   
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRI 60

Query: 103 LSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVT 162
           + D+  ++P YK   +FF++ +SR L+  + + + V   +  ++E+ L++  ++S  F  
Sbjct: 61  IDDL--KNPKYKSYHIFFTNSLSRSLLERLAE-ADVAELVKQVKEIYLDFIPLESDLFSL 117

Query: 163 DDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFS 222
           +   +  +L+    +    ++ L  +A  + ++  +L E P++RY+             +
Sbjct: 118 ELPNSFRDLY----SPDGDESDLERIAEGLFSLLLTLGEIPIIRYQGNS---------AA 164

Query: 223 DLIPTKLAAGVWNCLMKYKQSIENFP-QTETCDLLILDRSVDQVAPIIHEWTYDAICRDL 281
           + +  KLA  +   L  +     + P       LLILDRS+D + P++H+WTY A+  DL
Sbjct: 165 ERLAEKLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDL 224

Query: 282 LNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKN 341
           L ++ N+    + +   G   KKEV+L+E+DP W+E RH H  D +E++ +++  +  +N
Sbjct: 225 LGIKNNRV--TLDTPGNGGESKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEEN 282

Query: 342 KAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELG 401
           K +  +       + S  DL++ V+ LP++  +  KLSLH+ +A ++ K I+E +L ++ 
Sbjct: 283 KNSNKK-------KKSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVS 335

Query: 402 QLEQDLVFGDAGLKDVVKFFT--TNEDVSRENKLRLLMILAAIYPEK-FQGEKGQNIMKL 458
           +LEQDL  G    K          N  V  E+KLRLL++ +     K    E  + ++  
Sbjct: 336 ELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLRDGGKGKDLEDLRKLLLH 395

Query: 459 ARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFY 518
           A +  + +  V N+  LGG    + S +    L+  +            +     LSR+ 
Sbjct: 396 AGIGPEALNLVKNLEQLGGLL-SRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRYK 454

Query: 519 PMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPR 578
           P+++ ++E L K +L  D YP  +                      S+RS+R     + R
Sbjct: 455 PLLKRILEDLIKGKLDTDSYPYFDPKLANA-----------SGPQGSLRSKRPTAAGQGR 503

Query: 579 NSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTS 637
                                  QRI VF+VGG T SE R  ++L++K N + +I+GSTS
Sbjct: 504 QP--------------------PQRIIVFVVGGVTYSEARALYELSKKTNGKRVIIGSTS 543

Query: 638 LDDPPQFITKM 648
           + +P  F+ ++
Sbjct: 544 ILNPESFLEEL 554

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 663
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-101  Score=813.76  Aligned_cols=575  Identities=43%  Similarity=0.710  Sum_probs=496.1

Q ss_pred             hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCCH
Q 006048           17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK   96 (663)
Q Consensus        17 ~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~   96 (663)
                      +|+++.+++++..+++ +.   ....|||||+|+.+++|+|+||+|++++++||++++.|+..|+|+|.+.|||||+|+.
T Consensus         2 ~l~~l~~~kil~~v~~-~~---k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~   77 (593)
T KOG1300|consen    2 GLKELVKKKILEDVLR-VE---KKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE   77 (593)
T ss_pred             chHHHHHHHHHHHhcc-cC---CCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence            4788999999988887 32   2347999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCCCC
Q 006048           97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE  176 (663)
Q Consensus        97 ~~i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~  176 (663)
                      ++|++++.||....|.|+.+||||+..||+.++..+.+ ..+...|+++.|++++|+|+|+++|+++.+.+|..+|.+. 
T Consensus        78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~-  155 (593)
T KOG1300|consen   78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD-  155 (593)
T ss_pred             hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence            99999999997667899999999999999999999974 4478889999999999999999999999999999999975 


Q ss_pred             CccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCCCCCCeeEE
Q 006048          177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL  256 (663)
Q Consensus       177 ~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~~~~Li  256 (663)
                      +.......++.+|.+|+++|.++|++|.|||++..+..+       ..+|.++|.++++.+..|+.+.+++|..+++.||
T Consensus       156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl  228 (593)
T KOG1300|consen  156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL  228 (593)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence            444557899999999999999999999999999876655       3689999999999999998767778888899999


Q ss_pred             EEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHHHHHHH
Q 006048          257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTS  336 (663)
Q Consensus       257 IlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~~~~~  336 (663)
                      |+||++|+++|+||+||||||+||+++|+++.|.++.+...|+  ++|+++|+++|++|.++||+||++|.+.|.+.+++
T Consensus       229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~  306 (593)
T KOG1300|consen  229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN  306 (593)
T ss_pred             EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--ccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998655553  37889999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCC-ChH
Q 006048          337 FISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA-GLK  415 (663)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~-~~~  415 (663)
                      |.++++....     .++..|+.|++.+|++||+|+++..+++.|++||++|++.++. .+.+++.+||++++|.+ ..+
T Consensus       307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~  380 (593)
T KOG1300|consen  307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE  380 (593)
T ss_pred             HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence            9998865433     2446899999999999999999999999999999999999988 99999999999999953 322


Q ss_pred             -------HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCCCCC
Q 006048          416 -------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGA  488 (663)
Q Consensus       416 -------~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~  488 (663)
                             .+++++. ...+...||+|++++|.+. .+|+......+|+++.|++.++..++.|+..+|.....     +.
T Consensus       381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~  453 (593)
T KOG1300|consen  381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DS  453 (593)
T ss_pred             cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCcccc-----Cc
Confidence                   2344444 4678999999999999998 47999999999999999999999999999999876541     22


Q ss_pred             CCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcccccccC
Q 006048          489 FSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRS  568 (663)
Q Consensus       489 ~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~  568 (663)
                      +..+|    ..+.++++. .+..|.+|||+|.++.|+|++++++|+++.|||+.+++....| +            ...+
T Consensus       454 ~~~k~----~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~-~------------~~~S  515 (593)
T KOG1300|consen  454 FLLKF----DPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSG-S------------AATS  515 (593)
T ss_pred             ccccC----CCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCcccccc-C------------cccc
Confidence            22222    233356774 7899999999999999999999999999999999877622111 1            1222


Q ss_pred             CCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHH
Q 006048          569 RRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKM  648 (663)
Q Consensus       569 ~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l  648 (663)
                      +|++.|-......              .+++.++++||||+||+||+|+|++|+++++.+++|+||||+|++|.+||..|
T Consensus       516 ar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~~l  581 (593)
T KOG1300|consen  516 ARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLDDL  581 (593)
T ss_pred             ccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHHHH
Confidence            3334444332210              12357899999999999999999999999999999999999999999999999


Q ss_pred             hcc
Q 006048          649 KML  651 (663)
Q Consensus       649 ~~l  651 (663)
                      +.+
T Consensus       582 k~~  584 (593)
T KOG1300|consen  582 KLL  584 (593)
T ss_pred             hhc
Confidence            943

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 1e-64
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 4e-61
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 5e-61
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 8e-59
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 1e-58
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 4e-55
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 5e-23
1y9j_A159 Solution Structure Of The Rat Sly1 N-Terminal Domai 1e-08
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 186/650 (28%), Positives = 324/650 (49%), Gaps = 78/650 (12%)
Query: 18  FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIH 77
            K    E+++ +++ + K     + WKVLI+D+L+++++S  CKM +I  EG++LVEDI+
Sbjct: 3   LKTAVHEKIMNDVVLAVK---KNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 59
Query: 78  RRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDS 136
           RRR+PLP +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K S
Sbjct: 60  RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 118
Query: 137 TVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVF 196
           T    I  L+E+N+ +   +SQ F  D      +++ +   ++ G       A +IAT+ 
Sbjct: 119 TTARFIKTLKEINIAFLPYESQIFSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLC 177
Query: 197 ASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTETC 253
           A+L E+P VRYR+    D     +F+ L+  KL A        Y+    ++   PQ +  
Sbjct: 178 ATLGEYPSVRYRS----DFDENASFAQLVQQKLDA--------YRADDPTMGEGPQKDRS 225
Query: 254 DLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGP--PEKKEVLLEEH 311
            LLILDR  D ++P++HE T+ A+  DLL +E + Y +     TGG   PE KEVLL+E 
Sbjct: 226 QLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKY---VNTGGNEVPE-KEVLLDEK 281
Query: 312 DPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQY 371
           D LW+E+RH HIA  S+ + +K+  F  + +       A        KDL +M++ +PQY
Sbjct: 282 DDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKA------GIKDLSQMLKKMPQY 335
Query: 372 SDQIDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAG-------LKDVVKFFTTN 424
             ++ K S H+ +A    K                 +  DA        ++++V     +
Sbjct: 336 QKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPIL-LD 394
Query: 425 EDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS 484
           + +S  +K+R+++ L  I+      E    +++ A + +++   +N+M+ L G   I+  
Sbjct: 395 QKISAYDKIRIIL-LYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNL-GVPIIQDG 452
Query: 485 STGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEP 544
                   +  +     RK+R   + T+Q+SR+ P +++++E   + +L    YP +N  
Sbjct: 453 GRRKIPQPYHTHN----RKERQA-DHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGG 507
Query: 545 SPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRI 604
            P              P      S R   W +    D G +S            K G R+
Sbjct: 508 GPR-------------PSCQQPVSVRYGHWHK----DKGQAS-----------YKSGPRL 539
Query: 605 FVFIVGGATRSELRVCHKLTR--KLNREIILGSTSLDDPPQFITKMKMLT 652
            +F+VGG + SE+R  +++T+  K N E+ILGST +  P   +  ++ ++
Sbjct: 540 IIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query663
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-131
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 1e-113
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 1e-110
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 1e-110
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 1e-109
1y9j_A159 SEC1 family domain containing protein 1; membrane 1e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  399 bits (1025), Expect = e-131
 Identities = 154/657 (23%), Positives = 318/657 (48%), Gaps = 46/657 (7%)

Query: 15  YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVE 74
           + + K   +  L    LRS   G     WKVL++DK  ++++S   +M++I   GV++VE
Sbjct: 1   HMSLKSAVKTVLT-NSLRSVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVE 56

Query: 75  DIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK 134
           D+ ++R+ LP    +YFI+PT+EN+   + D + R+P Y+ A +FF SP+   L+  +  
Sbjct: 57  DVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLAS 116

Query: 135 DSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIAT 194
            +  +  +  L+E+N  +   + + F  ++   L + +G   +S      ++ +  R++T
Sbjct: 117 -AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSS----YNIDHLVRRLST 171

Query: 195 VFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCD 254
           +  ++   P+VRY +  +  T  M   +  +  ++   V   L+  ++            
Sbjct: 172 LCTTMNVAPIVRYSSTSTPGTERM---AMQLQKEIDMSVSQGLINAREG------KLKSQ 222

Query: 255 LLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPL 314
            LILDR+VD  +P++HE TY A   DLLN+E + Y +      GG  ++++V+L E D +
Sbjct: 223 FLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYS-TVDAGGREQQRQVVLGEDDDI 281

Query: 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQ 374
           WL++RH HI++   ++      F    +  Q    ++  GE     L++M++ LPQ+ +Q
Sbjct: 282 WLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQ-GEGGAGALKQMLKDLPQHREQ 340

Query: 375 IDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFT-------TNEDV 427
           + K SLH++++  IN       +    + EQ++V  +    + V+ F         +  V
Sbjct: 341 MQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRV 399

Query: 428 SRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG 487
           S E+KLR LM+   +        +  N++  A + +   +A+ N+ +LG           
Sbjct: 400 STEDKLRCLMLC-VLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLG----------- 447

Query: 488 AFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPT 547
             ++  D   ++     R   +  + LSR+ P++++L+E +   +L  + YP + +    
Sbjct: 448 -ATVVADRRGRKPKTMKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSV 506

Query: 548 VHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVL-----RHASSDFKKMGQ 602
           V  K  S ++ +     +  +R+   WA+ + ++    S           A+   +    
Sbjct: 507 VQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKP 566

Query: 603 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLD 659
           ++FVFI G  + +E+R  +++++    E+ +G+ ++  P +F+  + +L   +  + 
Sbjct: 567 KLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLLDKADQDVQ 623
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query663
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.95
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=1e-106  Score=916.51  Aligned_cols=573  Identities=30%  Similarity=0.561  Sum_probs=476.0

Q ss_pred             hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCC
Q 006048           16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT   95 (663)
Q Consensus        16 ~~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt   95 (663)
                      -+|++++|++|+++||++++.   .++|||||+|+.+++|||+||++++|+++||++++.|+..|+|+|+++|||||+||
T Consensus         4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt   80 (594)
T 1dn1_A            4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS   80 (594)
T ss_dssp             CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred             hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence            479999999999889999853   35799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCC
Q 006048           96 KENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD  174 (663)
Q Consensus        96 ~~~i~~i~~d~~~-~~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~  174 (663)
                      .+||++|++||++ ..++|++|||||++.+|+.+++.||+ .++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+
T Consensus        81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~  159 (594)
T 1dn1_A           81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP  159 (594)
T ss_dssp             HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred             HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence            9999999999974 23799999999999999999999996 478999999999999999999999999999999999986


Q ss_pred             CCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCC---CCC
Q 006048          175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTE  251 (663)
Q Consensus       175 ~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~  251 (663)
                      ..+ .+....++++|++|+++|.++|.+|.|||+|+.            ..|+++|+.|++.|.++...+++++   ..+
T Consensus       160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~  226 (594)
T 1dn1_A          160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA  226 (594)
T ss_dssp             GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred             ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence            432 234678999999999999999999999999874            2478899999999988765544432   234


Q ss_pred             CeeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHH
Q 006048          252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH  331 (663)
Q Consensus       252 ~~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~  331 (663)
                      +++|||+||++|++|||+||||||||+||+|||++|+|+++.+.  .+..++|++.|+++|+||.++||+||++|++.|.
T Consensus       227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~  304 (594)
T 1dn1_A          227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT  304 (594)
T ss_dssp             GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred             CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence            78999999999999999999999999999999999999998632  1234568899999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCC
Q 006048          332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD  411 (663)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~  411 (663)
                      +++++|+++++..       ..+..+++||++||++||+++++++.+++|++||++|++.+++ .|++++++||+|++|.
T Consensus       305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~  376 (594)
T 1dn1_A          305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT  376 (594)
T ss_dssp             HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred             HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence            9999998765321       1235678899999999999999999999999999999999987 8999999999999986


Q ss_pred             CC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCC
Q 006048          412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK  483 (663)
Q Consensus       412 ~~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~  483 (663)
                      +.        .+.+.++|. +++++.+|||||+|||+|++ +|+++++++++++++|++.+++.++.||+.+|+...+..
T Consensus       377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~  454 (594)
T 1dn1_A          377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS  454 (594)
T ss_dssp             CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred             CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence            42        234566776 46789999999999999997 589999999999999999999999999999997654221


Q ss_pred             CCCCCCCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCccc
Q 006048          484 SSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA  563 (663)
Q Consensus       484 ~~~~~~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~  563 (663)
                      .       ..  |.+.+.++++ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...+             
T Consensus       455 ~-------~~--k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~-------------  511 (594)
T 1dn1_A          455 T-------LR--RRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS-------------  511 (594)
T ss_dssp             G-------GG--CCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-------------------
T ss_pred             c-------cc--cccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc-------------
Confidence            1       00  1222333333 67899999999999999999999999999999999765421100             


Q ss_pred             ccccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcC-CeEEEccCcccChh
Q 006048          564 HSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTSLDDPP  642 (663)
Q Consensus       564 ~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~-~~iiigsT~Ii~~~  642 (663)
                      .+..+.|+++|++.++...               .+.++++||||+||+||+|+|++|++++..+ ++|+||||+|+||+
T Consensus       512 ~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~  576 (594)
T 1dn1_A          512 TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ  576 (594)
T ss_dssp             -----------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHH
T ss_pred             ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHH
Confidence            1122345578986543211               1357899999999999999999999999874 89999999999999


Q ss_pred             HHHHHHhccCCCC
Q 006048          643 QFITKMKMLTVDE  655 (663)
Q Consensus       643 ~fl~~l~~l~~~~  655 (663)
                      +||++|..|++++
T Consensus       577 ~Fl~~l~~l~~~~  589 (594)
T 1dn1_A          577 KLLDTLKKLNKTD  589 (594)
T ss_dssp             HHHHHHTTTTSCS
T ss_pred             HHHHHHHHhCCCc
Confidence            9999999999875
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 663
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-140
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-136
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-134
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  419 bits (1077), Expect = e-140
 Identities = 175/645 (27%), Positives = 317/645 (49%), Gaps = 68/645 (10%)

Query: 18  FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIH 77
            K    E+++ +++ + K     + WKVLI+D+L+++++S  CKM +I  EG++LVEDI+
Sbjct: 2   LKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 58

Query: 78  RRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDS 136
           RRR+PLP +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K S
Sbjct: 59  RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 117

Query: 137 TVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVF 196
           T    I  L+E+N+ +   +SQ F  D     +  + +   ++ G       A +IAT+ 
Sbjct: 118 TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYY-NPSRAQGGIPNKERCAEQIATLC 176

Query: 197 ASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256
           A+L E+P VRYR+    D     +F+ L+  KL     +       ++   PQ +   LL
Sbjct: 177 ATLGEYPSVRYRS----DFDENASFAQLVQQKL-----DAYRADDPTMGEGPQKDRSQLL 227

Query: 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWL 316
           ILDR  D ++P++HE T+ A+  DLL +E + Y  +  +  G    +KEVLL+E D LW+
Sbjct: 228 ILDRGFDPISPLLHELTFQAMAYDLLPIENDVY--KYVNTGGNEVPEKEVLLDEKDDLWV 285

Query: 317 ELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQID 376
           E+RH HIA  S+ + +K+  F  + +            +   KDL +M++ +PQY  ++ 
Sbjct: 286 EMRHQHIAVVSQNVTKKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELS 339

Query: 377 KLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTT-------NEDVSR 429
           K S H+ +A    K  ++  + +L ++EQDL  G     + ++           ++ +S 
Sbjct: 340 KYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISA 398

Query: 430 ENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAF 489
            +K+R++++   I+      E    +++ A + +++   +N+M+ LG             
Sbjct: 399 YDKIRIILLY-IIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIP 457

Query: 490 SLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVH 549
                 N+K          + T+Q+SR+ P +++++E   + +L    YP +N   P   
Sbjct: 458 QPYHTHNRK------ERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR-- 509

Query: 550 AKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIV 609
                      P      S R   W + +                    K G R+ +F+V
Sbjct: 510 -----------PSCQQPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVV 543

Query: 610 GGATRSELRVCHKLTRKL--NREIILGSTSLDDPPQFITKMKMLT 652
           GG + SE+R  +++T+    N E+ILGST +  P   +  ++ ++
Sbjct: 544 GGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 588
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query663
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.7e-98  Score=851.23  Aligned_cols=572  Identities=30%  Similarity=0.555  Sum_probs=472.2

Q ss_pred             hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCCH
Q 006048           17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK   96 (663)
Q Consensus        17 ~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~   96 (663)
                      +||+++|+++++++++++++   ++.|||||+|+.+++|||++|++++|+++||++++.|+..|+|+|+++|||||+|+.
T Consensus         2 ~~~~~~~~~~l~~~~~~v~~---~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~   78 (589)
T d1dn1a_           2 GLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSE   78 (589)
T ss_dssp             CHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCH
T ss_pred             ChHHHHHHHHHHHHHhccCC---CCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCH
Confidence            58999999999999999974   346999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCCC
Q 006048           97 ENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE  175 (663)
Q Consensus        97 ~~i~~i~~d~~~~-~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~  175 (663)
                      +||++|++||+.. .++|++|||+|++++|+.+++.||++ ++++.|.+|.|+++||+|+|+|+|+|++|++|..+|.++
T Consensus        79 ~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~~-~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~~  157 (589)
T d1dn1a_          79 KSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKS-RAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPH  157 (589)
T ss_dssp             HHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHS-GGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGG
T ss_pred             HHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhc-CccccCCeEEEEecceeeCCCCEEEecCCchHHHhcCCc
Confidence            9999999999742 35899999999999999999999974 689999999999999999999999999999999999865


Q ss_pred             CCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCCC---CCC
Q 006048          176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET  252 (663)
Q Consensus       176 ~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~---~~~  252 (663)
                      +. ......++++|++|+++|.++|.+|.|||+|++            ..|+++|+.+++++..+.++.+.++.   .++
T Consensus       158 ~~-~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~  224 (589)
T d1dn1a_         158 KA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKAR  224 (589)
T ss_dssp             GT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGG
T ss_pred             cc-chhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCc------------hHHHHHHHHHHHHHHHHHhcCcccCCCcccCC
Confidence            32 334678999999999999999999999999884            35778899999988888765544432   346


Q ss_pred             eeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHHH
Q 006048          253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE  332 (663)
Q Consensus       253 ~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~  332 (663)
                      ++|||+||++|++|||+|||||||||||+|||++|.|+++.+..  +..+.+++.++..|+||+++||+||++|+..|.+
T Consensus       225 ~~LiIlDR~~DliTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~--~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~  302 (589)
T d1dn1a_         225 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI--GEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTR  302 (589)
T ss_dssp             CEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSS--SSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHH
T ss_pred             ceEEEeccCccccccccccccHHHHHHHHhcccCCeEEecCCCC--CcccceEeecCCCcHHHHHhhcccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999987422  2344678899999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCC
Q 006048          333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA  412 (663)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~  412 (663)
                      ++++++++++.       ...+..+++||+++|+++|+++++++.++.|++|+++|++.++ ++|.+++++||+|++|.+
T Consensus       303 ~~~~~~~~~~~-------~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~  374 (589)
T d1dn1a_         303 SLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTD  374 (589)
T ss_dssp             HHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBC
T ss_pred             HHHHHHHHhhh-------hccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence            99999876532       1223457789999999999999999999999999999999995 789999999999998754


Q ss_pred             C--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC
Q 006048          413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS  484 (663)
Q Consensus       413 ~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~  484 (663)
                      .        ...+++++. +.+++.+|+|||+|||++++ +|+++++++++++..|++.+.+.++.+|+.+|....+...
T Consensus       375 ~~~~~~~~~~~~i~~~l~-~~~~~~~d~LRL~~l~~l~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~  452 (589)
T d1dn1a_         375 AEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST  452 (589)
T ss_dssp             SSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCG
T ss_pred             cchhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCChHHHHHHHHHHHhCCccccCch
Confidence            2        245677776 46789999999999999998 5999999999999999998999999999999986542211


Q ss_pred             CCCCCCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcccc
Q 006048          485 STGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAH  564 (663)
Q Consensus       485 ~~~~~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~  564 (663)
                             .+  +......+ ..+.+.+|+++||+|+++++++.++++.++.+.||++..+.....+.             
T Consensus       453 -------~~--~~~~~~~~-~~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~~~p~~~~~~~~~~~~-------------  509 (589)
T d1dn1a_         453 -------LR--RRSKPERK-ERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFST-------------  509 (589)
T ss_dssp             -------GG--CCCCCCCC-CCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------
T ss_pred             -------hh--cccccccc-cCCcccccccccchHHHHHHHHHHHhCCCCcccCcccCCCccccccc-------------
Confidence                   00  01111111 13567889999999999999999999999999999987544221110             


Q ss_pred             cccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcC-CeEEEccCcccChhH
Q 006048          565 SMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTSLDDPPQ  643 (663)
Q Consensus       565 s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~-~~iiigsT~Ii~~~~  643 (663)
                      .....+++.|.++....               ....++++||||||||||+|+++||+|+++.| ++|+||||+|+||++
T Consensus       510 ~~~~~~~~~~~~~~~~~---------------~~~~~~~viVF~vGGvTy~E~~~l~~l~~~~~~~~iiiGsT~iln~~~  574 (589)
T d1dn1a_         510 TAVSARYGHWHKNKAPG---------------EYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQK  574 (589)
T ss_dssp             ----------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHH
T ss_pred             cccccccccccccCCCC---------------cCCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCceEEEEeCCEecHHH
Confidence            01111122343322110               01356799999999999999999999998876 699999999999999


Q ss_pred             HHHHHhccCCCC
Q 006048          644 FITKMKMLTVDE  655 (663)
Q Consensus       644 fl~~l~~l~~~~  655 (663)
                      ||++|.+|++++
T Consensus       575 fl~~l~~L~~~~  586 (589)
T d1dn1a_         575 LLDTLKKLNKTD  586 (589)
T ss_dssp             HHHHHTTTTSCS
T ss_pred             HHHHHHHhCCcc
Confidence            999999999875
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure