Citrus Sinensis ID: 006074

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
cHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHcEEcccccEEEEcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccEEEcc
cHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEcccccEEEEEHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHccHHHHcccccccccccccEEEEcccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDrtyvkqtpnvrSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGiysesfekpfleCTSEFYAAEGMkymqqsdvpdyLKHVEIRLHEEHERCLLyldvstrkpLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTghgivmdeekDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLragnkgtseeelEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSqartklpsgiemSVHVlttgywptyppmdvrlpheLNVYQDIFKEFYLSKYSGRRLMWQNslghcvlkaefpkgkKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKvrvlqklpkgrdvedddsfvfnegftaplyrIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQlkfpikpaDLKKRIESLIDReylerdknnpqiynyla
MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAgnkgtseeelegtlDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQssqartklpsgiEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRtlqslacgkvrvlqklpkgrdvedddsfvfnegftaplyrikVNAIQMKETVeentsttervfqdrqyqVDAAIVRIMKTRKVLSHTLLITELFqqlkfpikpadLKKRIESlidreylerdknnpqiynyla
MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
***********ECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL************EGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASI****************************************************IEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVE****TTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYL**************
MGGNLYQRIEKECEEHISAAIRSLVG**PDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL*************GTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGK**SIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRV***********DDDSFVFNEGFTAPLYRIKV*********************DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGN********EGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINE***********LPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
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MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query662 2.2.26 [Sep-21-2011]
Q8LGH4792 Cullin-4 OS=Arabidopsis t yes no 1.0 0.835 0.870 0.0
Q13620913 Cullin-4B OS=Homo sapiens yes no 0.998 0.723 0.609 0.0
Q13619759 Cullin-4A OS=Homo sapiens no no 0.990 0.864 0.607 0.0
A2A432970 Cullin-4B OS=Mus musculus yes no 0.998 0.681 0.606 0.0
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.993 0.866 0.6 0.0
Q54CS2802 Cullin-4 OS=Dictyostelium yes no 0.995 0.821 0.497 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium no no 0.989 0.851 0.422 1e-150
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.944 0.853 0.427 1e-144
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.942 0.852 0.427 1e-143
Q6GPF3768 Cullin-3-B OS=Xenopus lae N/A no 0.993 0.856 0.407 1e-141
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1 Back     alignment and function desciption
 Score = 1174 bits (3036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/662 (87%), Positives = 612/662 (92%)

Query: 1   MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLD 60
           + G LY +IEKECEEHISAA++SLVGQ+ DL VFLS VE+CWQD CDQMLMIR IAL LD
Sbjct: 131 LDGKLYDQIEKECEEHISAALQSLVGQNTDLTVFLSRVEKCWQDFCDQMLMIRSIALTLD 190

Query: 61  RTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHL 120
           R YV Q PNVRSLW+MGLQLFRK+LS   EVE +TV GLL MIE+ERL EAV+RTLL+HL
Sbjct: 191 RKYVIQNPNVRSLWEMGLQLFRKHLSLAPEVEQRTVKGLLSMIEKERLAEAVNRTLLSHL 250

Query: 121 LKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY 180
           LKMFTALGIY ESFEKPFLE TSEFYAAEGMKYMQQSDVP+YLKHVE RLHEE+ERC+LY
Sbjct: 251 LKMFTALGIYMESFEKPFLEGTSEFYAAEGMKYMQQSDVPEYLKHVEGRLHEENERCILY 310

Query: 181 LDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQ 240
           +D  TRKPLI T ERQLLERHI  +L+KGFT LMDG RTEDLQRM +LFSRVNALESLRQ
Sbjct: 311 IDAVTRKPLITTVERQLLERHILVVLEKGFTTLMDGRRTEDLQRMQTLFSRVNALESLRQ 370

Query: 241 ALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLI 300
           AL+ Y+R+TG  IVMDEEKDKDMV SLL+FKASLD IWE+SF KNE+F NTIKD+FE+LI
Sbjct: 371 ALSSYVRKTGQKIVMDEEKDKDMVQSLLDFKASLDIIWEESFYKNESFGNTIKDSFEHLI 430

Query: 301 NLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLA 360
           NLRQNRPAELIAKFLDEKLRAGNKGTSEEELE  L+KVLVLFRFIQGKDVFEAFYKKDLA
Sbjct: 431 NLRQNRPAELIAKFLDEKLRAGNKGTSEEELESVLEKVLVLFRFIQGKDVFEAFYKKDLA 490

Query: 361 KRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL 420
           KRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL
Sbjct: 491 KRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL 550

Query: 421 PSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 480
           PSGIEMSVHVLTTGYWPTYPPMDV+LPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV
Sbjct: 551 PSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 610

Query: 481 LKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 540
           LKA+F KGKKELAVSLFQ VVLMLFNDA KLSF+DIKD+T IEDKELRRTLQSLACGKVR
Sbjct: 611 LKADFSKGKKELAVSLFQAVVLMLFNDAMKLSFEDIKDSTSIEDKELRRTLQSLACGKVR 670

Query: 541 VLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD 600
           VLQK PKGRDVED D F FN+ F APLYRIKVNAIQMKETVEENTSTTERVFQDRQYQ+D
Sbjct: 671 VLQKNPKGRDVEDGDEFEFNDEFAAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQID 730

Query: 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660
           AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER+K+NPQIYNY
Sbjct: 731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLEREKSNPQIYNY 790

Query: 661 LA 662
           LA
Sbjct: 791 LA 792
Component of the CUL4-RBX1-CDD (COP10-DDB1a-DET1) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Participates in the CDD complex to light-mediated control of development. May repress photomorphogenesis through enhancing COP1 E3 ubiquitin-protein ligase activity. Acts together with the CUL4-DDB1-COP1-SPA E3 ubiquitin-protein ligase complexes in the repression of photomorphogenesis and flowering time. Component ot the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex which mediates ubiquitination and subsequent degradation of AKIN10. Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling and may target ABI5 for degradation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
297740729 802 unnamed protein product [Vitis vinifera] 1.0 0.825 0.957 0.0
359483875 828 PREDICTED: cullin-4 [Vitis vinifera] 1.0 0.799 0.957 0.0
356555528 788 PREDICTED: cullin-4-like [Glycine max] 1.0 0.840 0.945 0.0
147775823 806 hypothetical protein VITISV_010491 [Viti 0.998 0.820 0.946 0.0
350538715 785 cullin 4 [Solanum lycopersicum] gi|15989 1.0 0.843 0.932 0.0
224116118 811 predicted protein [Populus trichocarpa] 1.0 0.816 0.930 0.0
356512304 775 PREDICTED: cullin-4-like [Glycine max] 1.0 0.854 0.924 0.0
357447273 792 Cullin [Medicago truncatula] gi|35548296 1.0 0.835 0.913 0.0
357447271 794 Cullin [Medicago truncatula] gi|35548295 1.0 0.833 0.911 0.0
356528204760 PREDICTED: cullin-4-like [Glycine max] 1.0 0.871 0.916 0.0
>gi|297740729|emb|CBI30911.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/662 (95%), Positives = 649/662 (98%)

Query: 1   MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLD 60
           MGGNLYQRIEKECE HI AA++SLVGQSPDLVVFLSLVE+CWQDLCDQMLMIRGIALYLD
Sbjct: 141 MGGNLYQRIEKECESHIRAALQSLVGQSPDLVVFLSLVEKCWQDLCDQMLMIRGIALYLD 200

Query: 61  RTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHL 120
           RTYVKQTPNVRSLWDMGLQLFRK+LS   EVEHKTVTGLLRMIERERLGEAVDRTLLNHL
Sbjct: 201 RTYVKQTPNVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIERERLGEAVDRTLLNHL 260

Query: 121 LKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY 180
           LKMFTALGIY ESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY
Sbjct: 261 LKMFTALGIYLESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY 320

Query: 181 LDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQ 240
           LD STRKPL+ATAERQLLERHISAILDKGF MLMDG+R EDLQRMY LFSRVNALESLRQ
Sbjct: 321 LDASTRKPLVATAERQLLERHISAILDKGFMMLMDGNRIEDLQRMYLLFSRVNALESLRQ 380

Query: 241 ALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLI 300
           AL+ YIRRTG GIVMDEEKDKDMVS LLEFKASLDTIWE+SFS+NEAFCNTIKDAFE+LI
Sbjct: 381 ALSSYIRRTGQGIVMDEEKDKDMVSCLLEFKASLDTIWEESFSRNEAFCNTIKDAFEHLI 440

Query: 301 NLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLA 360
           NLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLA
Sbjct: 441 NLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLA 500

Query: 361 KRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL 420
           KRLLLGKSASIDAEKSMI+KLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL
Sbjct: 501 KRLLLGKSASIDAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL 560

Query: 421 PSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 480
           P+GIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV
Sbjct: 561 PTGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 620

Query: 481 LKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 540
           LKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKD+TGIEDKELRRTLQSLACGKVR
Sbjct: 621 LKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLACGKVR 680

Query: 541 VLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD 600
           VLQKLPKGR+VEDDDSF+FNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD
Sbjct: 681 VLQKLPKGREVEDDDSFMFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD 740

Query: 601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660
           AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY
Sbjct: 741 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 800

Query: 661 LA 662
           LA
Sbjct: 801 LA 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483875|ref|XP_002270764.2| PREDICTED: cullin-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555528|ref|XP_003546083.1| PREDICTED: cullin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|147775823|emb|CAN75926.1| hypothetical protein VITISV_010491 [Vitis vinifera] Back     alignment and taxonomy information
>gi|350538715|ref|NP_001234356.1| cullin 4 [Solanum lycopersicum] gi|159895408|gb|ABX09988.1| cullin 4 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224116118|ref|XP_002332001.1| predicted protein [Populus trichocarpa] gi|222874769|gb|EEF11900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512304|ref|XP_003524860.1| PREDICTED: cullin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|357447273|ref|XP_003593912.1| Cullin [Medicago truncatula] gi|355482960|gb|AES64163.1| Cullin [Medicago truncatula] Back     alignment and taxonomy information
>gi|357447271|ref|XP_003593911.1| Cullin [Medicago truncatula] gi|355482959|gb|AES64162.1| Cullin [Medicago truncatula] Back     alignment and taxonomy information
>gi|356528204|ref|XP_003532695.1| PREDICTED: cullin-4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
TAIR|locus:2162060792 CUL4 "cullin4" [Arabidopsis th 1.0 0.835 0.870 6.2e-307
UNIPROTKB|E1BQK9884 CUL4B "Uncharacterized protein 1.0 0.748 0.610 9.4e-217
UNIPROTKB|K4DI93900 CUL4B "Cullin 4B, isoform CRA_ 0.998 0.734 0.609 1.4e-215
UNIPROTKB|Q13620913 CUL4B "Cullin-4B" [Homo sapien 0.998 0.723 0.609 1.4e-215
UNIPROTKB|E1BFD5965 CUL4B "Uncharacterized protein 0.998 0.684 0.609 1.7e-215
UNIPROTKB|E2RMN1982 CUL4B "Uncharacterized protein 0.998 0.673 0.607 2.8e-215
MGI|MGI:1919834970 Cul4b "cullin 4B" [Mus musculu 0.998 0.681 0.606 7.6e-215
ZFIN|ZDB-GENE-041008-208885 cul4b "cullin 4B" [Danio rerio 0.998 0.746 0.609 8.7e-214
UNIPROTKB|F1P2U1741 CUL4A "Uncharacterized protein 0.998 0.892 0.598 6.3e-211
UNIPROTKB|Q13619759 CUL4A "Cullin-4A" [Homo sapien 0.990 0.864 0.607 1.3e-210
TAIR|locus:2162060 CUL4 "cullin4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2945 (1041.8 bits), Expect = 6.2e-307, P = 6.2e-307
 Identities = 576/662 (87%), Positives = 612/662 (92%)

Query:     1 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLD 60
             + G LY +IEKECEEHISAA++SLVGQ+ DL VFLS VE+CWQD CDQMLMIR IAL LD
Sbjct:   131 LDGKLYDQIEKECEEHISAALQSLVGQNTDLTVFLSRVEKCWQDFCDQMLMIRSIALTLD 190

Query:    61 RTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHL 120
             R YV Q PNVRSLW+MGLQLFRK+LS   EVE +TV GLL MIE+ERL EAV+RTLL+HL
Sbjct:   191 RKYVIQNPNVRSLWEMGLQLFRKHLSLAPEVEQRTVKGLLSMIEKERLAEAVNRTLLSHL 250

Query:   121 LKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY 180
             LKMFTALGIY ESFEKPFLE TSEFYAAEGMKYMQQSDVP+YLKHVE RLHEE+ERC+LY
Sbjct:   251 LKMFTALGIYMESFEKPFLEGTSEFYAAEGMKYMQQSDVPEYLKHVEGRLHEENERCILY 310

Query:   181 LDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQ 240
             +D  TRKPLI T ERQLLERHI  +L+KGFT LMDG RTEDLQRM +LFSRVNALESLRQ
Sbjct:   311 IDAVTRKPLITTVERQLLERHILVVLEKGFTTLMDGRRTEDLQRMQTLFSRVNALESLRQ 370

Query:   241 ALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLI 300
             AL+ Y+R+TG  IVMDEEKDKDMV SLL+FKASLD IWE+SF KNE+F NTIKD+FE+LI
Sbjct:   371 ALSSYVRKTGQKIVMDEEKDKDMVQSLLDFKASLDIIWEESFYKNESFGNTIKDSFEHLI 430

Query:   301 NLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLA 360
             NLRQNRPAELIAKFLDEKLRAGNKGTSEEELE  L+KVLVLFRFIQGKDVFEAFYKKDLA
Sbjct:   431 NLRQNRPAELIAKFLDEKLRAGNKGTSEEELESVLEKVLVLFRFIQGKDVFEAFYKKDLA 490

Query:   361 KRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL 420
             KRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL
Sbjct:   491 KRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKL 550

Query:   421 PSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 480
             PSGIEMSVHVLTTGYWPTYPPMDV+LPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV
Sbjct:   551 PSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 610

Query:   481 LKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 540
             LKA+F KGKKELAVSLFQ VVLMLFNDA KLSF+DIKD+T IEDKELRRTLQSLACGKVR
Sbjct:   611 LKADFSKGKKELAVSLFQAVVLMLFNDAMKLSFEDIKDSTSIEDKELRRTLQSLACGKVR 670

Query:   541 VLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD 600
             VLQK PKGRDVED D F FN+ F APLYRIKVNAIQMKETVEENTSTTERVFQDRQYQ+D
Sbjct:   671 VLQKNPKGRDVEDGDEFEFNDEFAAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQID 730

Query:   601 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 660
             AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER+K+NPQIYNY
Sbjct:   731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLEREKSNPQIYNY 790

Query:   661 LA 662
             LA
Sbjct:   791 LA 792
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009640 "photomorphogenesis" evidence=RCA;IMP
GO:0048366 "leaf development" evidence=RCA;IMP
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0000209 "protein polyubiquitination" evidence=IDA
GO:0009908 "flower development" evidence=IMP
GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA;IMP
GO:0048367 "shoot system development" evidence=IMP
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA;IMP
GO:0010154 "fruit development" evidence=IMP
GO:0010182 "sugar mediated signaling pathway" evidence=RCA;IMP
GO:0048825 "cotyledon development" evidence=RCA;IMP
GO:0006281 "DNA repair" evidence=RCA;IMP
GO:0048575 "short-day photoperiodism, flowering" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048608 "reproductive structure development" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051301 "cell division" evidence=RCA
UNIPROTKB|E1BQK9 CUL4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K4DI93 CUL4B "Cullin 4B, isoform CRA_e" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13620 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFD5 CUL4B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMN1 CUL4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-208 cul4b "cullin 4B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2U1 CUL4A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q13619 CUL4A "Cullin-4A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13620CUL4B_HUMANNo assigned EC number0.60930.99840.7239yesno
Q54CS2CUL4_DICDINo assigned EC number0.49780.99540.8216yesno
O14122CUL4_SCHPONo assigned EC number0.35370.93800.8460yesno
Q17391CUL3_CAEELNo assigned EC number0.34960.99240.8455yesno
Q8LGH4CUL4_ARATHNo assigned EC number0.87001.00.8358yesno
A2A432CUL4B_MOUSENo assigned EC number0.60630.99840.6814yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-152
smart00182143 smart00182, CULLIN, Cullin 3e-57
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 2e-26
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 3e-25
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  584 bits (1508), Expect = 0.0
 Identities = 260/574 (45%), Positives = 361/574 (62%), Gaps = 16/574 (2%)

Query: 1   MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLD 60
           +G  LY R+++  EE+++A ++S++    +  V L    + W      M ++  I +YL+
Sbjct: 36  LGEKLYNRLKEYLEEYVAALLKSILENDDE--VLLKTYYKEWNKFSTSMKILNNIFMYLN 93

Query: 61  RTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHL 120
           R YVK+      ++++GL ++R+ L  +  ++ K +  LLR+IE+ERLGE +DR+L+ ++
Sbjct: 94  RYYVKRKNLDG-VYELGLDIWRESL--FDPIKDKLIDALLRLIEKERLGEIIDRSLIKNV 150

Query: 121 LKMFTALG-----IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHE 175
           L MF  LG     +Y E FEKPFLE TSEFY  E  K++Q++ V +Y+K VE RL EE E
Sbjct: 151 LDMFVELGLDKLEVYKEDFEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEE 210

Query: 176 RCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NA 234
           R  LYL  ST K LI   E+ L+E+H+  +    F  L+D  + EDL+RMY L SRV N 
Sbjct: 211 RVRLYLHSSTEKKLIEVCEKVLIEKHLEFLH-SEFQRLLDNEKIEDLRRMYRLLSRVPNG 269

Query: 235 LESLRQALAMYIRRTGHGIVMD---EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNT 291
           LE LR+    +I++ G   V D   E   KD V +LLE     D++  ++F+ +  F N 
Sbjct: 270 LEPLRKYFEKHIKKEGLAAVSDLAVETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNA 329

Query: 292 IKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVF 351
           +  AFE  IN   ++ AEL+AK+ D  L+   KG +EEELE  LDK++VLF++I+ KDVF
Sbjct: 330 LDKAFEEFINSNSSKSAELLAKYCDSLLKKSLKGLNEEELEEKLDKIIVLFKYIEDKDVF 389

Query: 352 EAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFK 411
           E FY+K LAKRLL G SAS DAEK MI KLK ECG QFT+KLE MFKDI LSKE+N SFK
Sbjct: 390 EKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERMFKDISLSKELNNSFK 449

Query: 412 QSSQAR-TKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRL 470
              +     L  GI++SV VL+TG+WPT P     LP EL    + F+EFY  K+SGR+L
Sbjct: 450 NHLENNLDLLSEGIDLSVLVLSTGFWPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKL 509

Query: 471 MWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRT 530
            W +SLG   LKAEF     EL VS +Q  VL+LFND ++L+ +++ +ATG+ D  LRRT
Sbjct: 510 TWLHSLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRT 569

Query: 531 LQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFT 564
           LQSL   KV +L K+PKG +   +  F  N  FT
Sbjct: 570 LQSLLKAKVLLLTKIPKGEEFSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 662
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 100.0
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.76
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 95.55
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 94.61
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 94.25
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 93.97
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 93.84
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 93.02
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 92.32
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 92.07
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 91.58
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 91.4
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 91.32
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 90.35
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 89.19
TIGR01889109 Staph_reg_Sar staphylococcal accessory regulator f 88.79
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 88.78
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 88.61
PF04492100 Phage_rep_O: Bacteriophage replication protein O ; 88.06
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 87.06
COG3682123 Predicted transcriptional regulator [Transcription 86.97
TIGR02698130 CopY_TcrY copper transport repressor, CopY/TcrY fa 86.83
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 86.44
PHA00738108 putative HTH transcription regulator 86.29
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 86.2
PRK11920153 rirA iron-responsive transcriptional regulator; Re 85.84
PRK10857164 DNA-binding transcriptional regulator IscR; Provis 85.73
PRK15090257 DNA-binding transcriptional regulator KdgR; Provis 84.94
PRK13777185 transcriptional regulator Hpr; Provisional 84.19
TIGR02010135 IscR iron-sulfur cluster assembly transcription fa 84.16
PRK03573144 transcriptional regulator SlyA; Provisional 83.19
PF0470362 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. 82.86
COG3355126 Predicted transcriptional regulator [Transcription 82.81
PF0558472 Sulfolobus_pRN: Sulfolobus plasmid regulatory prot 82.23
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 81.92
PF05732165 RepL: Firmicute plasmid replication protein (RepL) 81.77
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 81.59
PF03965115 Penicillinase_R: Penicillinase repressor; InterPro 80.96
smart0041948 HTH_CRP helix_turn_helix, cAMP Regulatory protein. 80.86
COG1959150 Predicted transcriptional regulator [Transcription 80.67
cd0009078 HTH_ARSR Arsenical Resistance Operon Repressor and 80.64
PF1360180 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 80.61
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 80.58
TIGR00738132 rrf2_super rrf2 family protein (putative transcrip 80.26
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-122  Score=951.39  Aligned_cols=655  Identities=65%  Similarity=1.007  Sum_probs=632.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-CCCcccHHHHHHHHHH
Q 006074            4 NLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQ-TPNVRSLWDMGLQLFR   82 (662)
Q Consensus         4 ~LY~~~~~~l~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~-~~~~~~i~~l~l~~f~   82 (662)
                      .||+.+++.+++|+++.+..+-..+.+...+|..+.++|..|...+.+++++|.||||.|+.. ++..+|+|++++.+||
T Consensus         1 ~ly~~l~~~~~~~~~~~~~q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp~v~siWem~l~LFR   80 (661)
T KOG2167|consen    1 VLYKQLRQICEQHIKAQIEQLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNPYVLSIWEMGLQLFR   80 (661)
T ss_pred             ChHHHHHHHHHHHHHHHHhhCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCCCcCCHHHhhHHHHH
Confidence            389999999999999888777666666678999999999999999999999999999999999 7789999999999999


Q ss_pred             HHhcC--CcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhhccHHhhhHHHHHHHHHHHHHHHHHHhhcCChh
Q 006074           83 KYLSS--YSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVP  160 (662)
Q Consensus        83 ~~v~~--~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~~Y~~~fE~~~l~~t~~yY~~~s~~~~~~~~~~  160 (662)
                      .+++.  .+.+..++.++++..++++|.|+++|+..|++++.|+.++++|.+.|+..|++.+.++|..+..+..++..++
T Consensus        81 ~~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLrsll~MLsd~~iY~esF~~~fls~f~~lY~aE~~d~~Qel~v~  160 (661)
T KOG2167|consen   81 AHFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLRSLLKMLSDLQIYKESFELTFLSLFRELYAAEGQDKRQELEVP  160 (661)
T ss_pred             HHhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcchhhhcccH
Confidence            99998  6788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccCCHHHHHHHHHHhccc-chHHHHH
Q 006074          161 DYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLR  239 (662)
Q Consensus       161 ~Yl~~v~~~i~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~il~~gl~~ll~~~~~~~L~~ly~l~~~~-~~l~~l~  239 (662)
                      +||++++.++.+|.+++..+++.++...+..++++.|+..|++.|+..|+..+++..++.++.+||.|++++ ++...++
T Consensus       161 eYl~h~e~~l~~E~~~~i~~~D~st~k~l~atV~~~LL~~hL~~IL~kgl~~lvDm~q~~d~~rly~L~~r~~~g~l~l~  240 (661)
T KOG2167|consen  161 EYLEHVEGRLEEENDRVIEYFDSSTKKPLIATVERCLLSRHLDLILTKGLDSLVDMRQTSDLTRLYMLFSRVQGGQLSLL  240 (661)
T ss_pred             HHHHhhhhcccchHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcchHHhhhhhhccchHhHHHHHHHHhcchHHHH
Confidence            999999999999999999999988877799999999999999999999999999999999999999999999 8999999


Q ss_pred             HHHHHHHHHHhchhccCccchHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 006074          240 QALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKN--EAFCNTIKDAFEYLINLRQNRPAELIAKFLDE  317 (662)
Q Consensus       240 ~~~~~~i~~~g~~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~--~~~~~~~~~af~~~ln~~~~~~~e~La~y~d~  317 (662)
                      ..|++|++..|.+++.+...++++|+.++.++++.+-++..||..+  ..|..++++||+.|+|..++++||+||+|.|.
T Consensus       241 qq~sdylk~~G~KlV~de~kDk~mVqELL~FK~k~Dii~~~sF~~~v~e~f~~~~~~afe~fink~~~rpAelIak~~dt  320 (661)
T KOG2167|consen  241 QQWSDYLKKPGFKLVIDEEKDKDMVQELLDFKKKVDIIVDESFLKYVAEKFLNSMSKAFETFINKRRNRPAELIAKYVDT  320 (661)
T ss_pred             HHHHHHHhcccceeccCchhhHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988  99999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHhhhhccceeeEeccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhccchhHhHHHHH
Q 006074          318 KLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMF  397 (662)
Q Consensus       318 ~lk~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml  397 (662)
                      .|+.|+++.++++++..+++++.||||+..||+|+.+|++.||+|||.++|+|.|+|+.|+++||.+||..||+||++|+
T Consensus       321 ~Lr~gnk~~~d~~l~~~~d~i~~lfr~i~gkdvfeA~ykkdLakrLLl~kSAsvdae~~ml~~lk~ecgs~ft~kLegMf  400 (661)
T KOG2167|consen  321 KLRAGNKETSDEELEFVLDKILVLFRFIHGKDVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKLECGSAFTYKLEGMF  400 (661)
T ss_pred             HHHhccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccchhhcchhHHHHHhhhhcchHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhccCCCCCccEEEEEeecCCCCCCCCCCccCChhHHHHHHHHHHHHhhcCCCeeeEeccCCc
Q 006074          398 KDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLG  477 (662)
Q Consensus       398 ~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~  477 (662)
                      +|+..|++++..|+.+...++..+.++ +.|.|+|.|+||.+++.++.||++|.++++.|..||..+|.||+|.|.+++|
T Consensus       401 kdme~sk~i~~~f~~~~~~~~~~~~~l-~~v~vlt~~yWpty~~~ev~Lp~em~~~~e~F~~fyl~k~sgrklqW~~~lg  479 (661)
T KOG2167|consen  401 KDMELSKEINRAFKQSKGANNRLEGNL-LTVNVLTMGYWPTYPPMEVLLPKEMRDCQEIFKKFYLGKHSGRKLQWQDSLG  479 (661)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccCcCCc-eEEEeecccccCCCCchhccCCHHHHHHHHHHHHhccccccCcceeeecCCc
Confidence            999999999999999865534444455 9999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEecCceEEEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeE
Q 006074          478 HCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSF  557 (662)
Q Consensus       478 ~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~  557 (662)
                      +|.+++.|+.|++++.||++|++||++||+++.+|++||.+.|+|.+.+|+++|+||.||+.++|.++|+|+.+.+++.|
T Consensus       480 ~~v~ka~f~~gkkel~~slfq~~vll~fn~~~~~s~~ei~~~t~i~d~el~rtlqsl~cgr~rvl~~~pkg~~~~~~~~f  559 (661)
T KOG2167|consen  480 HCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEGLSYEEIKESTGIEDIELRRTLQSLACGRARVLQKVPKGKEVEDGDKF  559 (661)
T ss_pred             chhhhhhccCCchHHHHHHHHHhHhhccCCCCcccHHHHHHhccccHHHHHHHHHHHhcccceeeeeCCCCCCCCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCcceEEecccccccchhhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHH
Q 006074          558 VFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKK  637 (662)
Q Consensus       558 ~~N~~f~~~~~~i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~  637 (662)
                      .+|..|+++..||+|++|..|++.+|++.|.++|.+||++.||||||||||+||+|+|+.|+.++.++++||+.+ ++|+
T Consensus       560 ~~n~~f~~kl~rikinqi~~ke~~ee~~~~~e~v~~drqy~idaaivrimk~rk~l~h~~l~~el~~qlkfpv~~-d~kk  638 (661)
T KOG2167|consen  560 IVNDKFTHKLYRIKINQIQMKETVEENKSTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVTELFNQLKFPVKP-DLKK  638 (661)
T ss_pred             EechhhcchhheehHhhhhHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCCCCCh-hHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988 9999


Q ss_pred             HHHhhhhhccccccCCCCCceeecC
Q 006074          638 RIESLIDREYLERDKNNPQIYNYLA  662 (662)
Q Consensus       638 ~Ie~Liereyi~r~~~~~~~y~Yia  662 (662)
                      |||+||+|||++|| +| +.|.|||
T Consensus       639 riesli~rey~erd-~n-~~y~yva  661 (661)
T KOG2167|consen  639 RIESLIDREYLERD-DN-NIYNYVA  661 (661)
T ss_pred             HHHHHHhHHHhccc-cc-ccccccC
Confidence            99999999999999 44 8999998

>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>COG3682 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>PHA00738 putative HTH transcription regulator Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed Back     alignment and domain information
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional Back     alignment and domain information
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional Back     alignment and domain information
>PRK13777 transcriptional regulator Hpr; Provisional Back     alignment and domain information
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR Back     alignment and domain information
>PRK03573 transcriptional regulator SlyA; Provisional Back     alignment and domain information
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea Back     alignment and domain information
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein Back     alignment and domain information
>COG1959 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors Back     alignment and domain information
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 0.0
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 0.0
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 0.0
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 0.0
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 2e-89
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 3e-89
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 2e-74
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 7e-59
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 9e-56
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-47
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-47
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-40
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 4e-39
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-37
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 3e-35
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 9e-32
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-25
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 8e-15
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 2e-13
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 4e-09
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 5e-06
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 8e-06
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure 
Iteration: 1

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/663 (60%), Positives = 510/663 (76%), Gaps = 2/663 (0%)
Query: 1   MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLD 60
           +  NLY+++ + CE+HI A I      S D V+FL  ++RCWQ+ C QM+MIR I L+LD
Sbjct: 65  ISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLD 124
Query: 61  RTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHL 120
           RTYV Q   + S+WDMGL+LFR ++ S  +V++KT+ G+L +IERER GEA+DR+LL  L
Sbjct: 125 RTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSL 184
Query: 121 LKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY 180
           L M + L IY +SFE+ FLE T+  YAAEG K MQ+ +VP+YL HV  RL EE +R + Y
Sbjct: 185 LSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITY 244
Query: 181 LDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLR 239
           LD +T+K LIAT E+QLL  H++AIL KG   L+D +R +DL  +Y LFSRV   ++ L 
Sbjct: 245 LDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLL 304
Query: 240 QALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYL 299
           Q    YI+  G  IV++ EKDK MV  LL+FK  +D I +  F KNE F N +K+AFE  
Sbjct: 305 QQWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETF 364
Query: 300 INLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDL 359
           IN R N+PAELIAK++D KLRAGNK  ++EELE  LDK++++FRFI GKDVFEAFYKKDL
Sbjct: 365 INKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDL 424
Query: 360 AKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTK 419
           AKRLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q +  
Sbjct: 425 AKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQN- 483
Query: 420 LPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHC 479
           +P  IE++V++LT GYWPTY PM+V LP E+   Q+IFK FYL K+SGR+L WQ++LGHC
Sbjct: 484 VPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHC 543
Query: 480 VLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKV 539
           VLKAEF +GKKEL VSLFQT+VL++FN+ ++ S ++IK ATGIED ELRRTLQSLACGK 
Sbjct: 544 VLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKA 603
Query: 540 RVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQV 599
           RVL K PKG+D+ED D F+ N+ F   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+
Sbjct: 604 RVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQI 663
Query: 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 659
           DAAIVRIMK RK LSH LL++E++ QLKFP+KPADLKKRIESLIDR+Y+ERDK NP  YN
Sbjct: 664 DAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYN 723
Query: 660 YLA 662
           Y+A
Sbjct: 724 YIA 726
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-123
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 6e-82
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 8e-75
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-67
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 3e-63
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 9e-35
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 3e-31
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 2e-27
3o2p_E88 Cell division control protein 53; ligase, cell cyc 1e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score =  675 bits (1741), Expect = 0.0
 Identities = 399/663 (60%), Positives = 499/663 (75%), Gaps = 2/663 (0%)

Query: 1   MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLD 60
           +   LY+++ + CE+H+ A I      S D V+FL  +  CWQD C QM+MIR I L+LD
Sbjct: 98  VSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLD 157

Query: 61  RTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHL 120
           RTYV Q   + S+WDMGL+LFR ++ S   V+ KT+ G+L +IERER GEAVDR+LL  L
Sbjct: 158 RTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSL 217

Query: 121 LKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY 180
           L M + L +Y +SFE  FLE T+  YAAEG + MQ+ +VP+YL HV  RL EE +R + Y
Sbjct: 218 LGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITY 277

Query: 181 LDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLR 239
           LD ST+KPLIA  E+QLL  H++AIL KG   L+D +R  DL +MY LFSRV    ++L 
Sbjct: 278 LDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALL 337

Query: 240 QALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYL 299
           Q  + YI+  G  IV++ EKDKDMV  LL+FK  +D + E  F KNE F N +K++FE  
Sbjct: 338 QHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETF 397

Query: 300 INLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDL 359
           IN R N+PAELIAK +D KLRAGNK  ++EELE TLDK+++LFRFI GKDVFEAFYKKDL
Sbjct: 398 INKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDL 457

Query: 360 AKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTK 419
           AKRLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q ++ 
Sbjct: 458 AKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD 517

Query: 420 LPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHC 479
               I+++V++LT GYWPTY PM+V L  E+   Q++FK FYL K+SGR+L WQ +LGH 
Sbjct: 518 -SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHA 576

Query: 480 VLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKV 539
           VLKAEF +GKKE  VSLFQT+VL++FN+    SF++IK ATGIED ELRRTLQSLACGK 
Sbjct: 577 VLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKA 636

Query: 540 RVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQV 599
           RVL K PKG++VED D F+FN  F   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+
Sbjct: 637 RVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQI 696

Query: 600 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 659
           DAAIVRIMK RK L H LL++EL+ QLKFP+KP DLKKRIESLIDR+Y+ERDK+NP  Y+
Sbjct: 697 DAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYH 756

Query: 660 YLA 662
           Y+A
Sbjct: 757 YVA 759
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.94
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.92
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.92
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.92
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 91.81
2jt1_A77 PEFI protein; solution structure, winged helix-tur 91.41
3jth_A98 Transcription activator HLYU; transcription factor 90.76
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 90.03
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 89.75
2fu4_A83 Ferric uptake regulation protein; DNA binding doma 89.5
1y0u_A96 Arsenical resistance operon repressor, putative; s 89.29
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 89.15
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 89.14
1sfx_A109 Conserved hypothetical protein AF2008; structural 89.07
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 88.78
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 88.63
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 88.57
3ech_A142 MEXR, multidrug resistance operon repressor; winge 87.88
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 87.66
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 87.52
1u2w_A122 CADC repressor, cadmium efflux system accessory pr 87.52
3cdh_A155 Transcriptional regulator, MARR family; helix-turn 87.39
3r0a_A123 Putative transcriptional regulator; structural gen 87.23
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 87.09
1qbj_A81 Protein (double-stranded RNA specific adenosine D 86.98
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 86.84
3oop_A143 LIN2960 protein; protein structure initiative, PSI 86.76
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 86.58
3pqk_A102 Biofilm growth-associated repressor; helix-turn-he 86.52
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 86.51
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 86.29
2gxg_A146 146AA long hypothetical transcriptional regulator; 86.28
2frh_A127 SARA, staphylococcal accessory regulator A; winged 86.08
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 85.91
3bj6_A152 Transcriptional regulator, MARR family; helix-turn 85.67
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 85.54
1jgs_A138 Multiple antibiotic resistance protein MARR; trans 85.45
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 84.92
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 84.87
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 84.61
1tbx_A99 ORF F-93, hypothetical 11.0 kDa protein; sulfolobu 84.53
1xmk_A79 Double-stranded RNA-specific adenosine deaminase; 84.49
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 84.39
1bja_A95 Transcription regulatory protein MOTA; activation 84.3
3e6m_A161 MARR family transcriptional regulator; APC88769, s 84.29
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 84.21
3bdd_A142 Regulatory protein MARR; putative multiple antibio 84.14
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 83.82
1p6r_A82 Penicillinase repressor; transcription regulation, 83.79
2pex_A153 Transcriptional regulator OHRR; transcription regu 83.7
2hr3_A147 Probable transcriptional regulator; MCSG, structur 83.65
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 83.27
3bja_A139 Transcriptional regulator, MARR family, putative; 83.09
1r1u_A106 CZRA, repressor protein; zinc, DNA binding, transc 83.0
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 82.93
3cjn_A162 Transcriptional regulator, MARR family; silicibact 82.93
3fm5_A150 Transcriptional regulator; MCSG, PF04017, PSI, MAR 82.92
2nyx_A168 Probable transcriptional regulatory protein, RV14; 82.91
2nnn_A140 Probable transcriptional regulator; structural gen 82.63
1ku9_A152 Hypothetical protein MJ223; putative transcription 82.49
3s2w_A159 Transcriptional regulator, MARR family; structural 82.4
2eth_A154 Transcriptional regulator, putative, MAR family; M 82.13
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 82.11
1s3j_A155 YUSO protein; structural genomics, MARR transcript 82.08
2kko_A108 Possible transcriptional regulatory protein (possi 81.86
1z91_A147 Organic hydroperoxide resistance transcriptional; 81.79
2bv6_A142 MGRA, HTH-type transcriptional regulator MGRA; mul 81.69
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 81.68
1p6r_A82 Penicillinase repressor; transcription regulation, 81.62
2e1c_A171 Putative HTH-type transcriptional regulator PH151; 81.6
3lwf_A159 LIN1550 protein, putative transcriptional regulato 81.59
3f3x_A144 Transcriptional regulator, MARR family, putative; 81.45
3jw4_A148 Transcriptional regulator, MARR/EMRR family; DNA-b 81.4
4b8x_A147 SCO5413, possible MARR-transcriptional regulator; 81.28
2oqg_A114 Possible transcriptional regulator, ARSR family P; 81.03
1sfu_A75 34L protein; protein/Z-DNA complex, DNA binding pr 81.0
2v79_A135 DNA replication protein DNAD; primosome, DNA-bindi 80.86
4aik_A151 Transcriptional regulator SLYA; transcription, tra 80.81
2xub_A 534 DNA-directed RNA polymerase III subunit RPC3; tran 80.81
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 80.63
2jsc_A118 Transcriptional regulator RV1994C/MT2050; cadmium, 80.51
2fbi_A142 Probable transcriptional regulator; MARR, APC5816, 80.5
2pn6_A150 ST1022, 150AA long hypothetical transcriptional re 80.34
2obp_A96 Putative DNA-binding protein; structural genomics, 80.32
3nqo_A189 MARR-family transcriptional regulator; structural 80.09
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
Probab=100.00  E-value=1.2e-131  Score=1139.89  Aligned_cols=661  Identities=60%  Similarity=0.970  Sum_probs=634.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCcccHHHHHHHH
Q 006074            1 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQL   80 (662)
Q Consensus         1 ~ge~LY~~~~~~l~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~~~~~i~~l~l~~   80 (662)
                      +|+.||+++++.+++|+...+..+...+.+++.||..|..+|.+|+.++.+|+++|+||||+|+.++++.++|+++|+.+
T Consensus        98 ~~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~l  177 (759)
T 2hye_C           98 VSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLEL  177 (759)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHH
Confidence            58999999999999999998877755333335899999999999999999999999999999999987679999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHhCCCcCChHHHHHHHHHHhhhhccHHhhhHHHHHHHHHHHHHHHHHHhhcCChh
Q 006074           81 FRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVP  160 (662)
Q Consensus        81 f~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~~ik~~i~ml~~l~~Y~~~fE~~~l~~t~~yY~~~s~~~~~~~~~~  160 (662)
                      |+++|+.++.+.++++++++++|+++|.|+.+|+.+|+++++||++|++|.+.||++||++|.+||+.+++.|+++.+++
T Consensus       178 fr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~  257 (759)
T 2hye_C          178 FRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVP  257 (759)
T ss_dssp             HHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHhcCHhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            99999987789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccCCHHHHHHHHHHhccc-chHHHHH
Q 006074          161 DYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLR  239 (662)
Q Consensus       161 ~Yl~~v~~~i~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~il~~gl~~ll~~~~~~~L~~ly~l~~~~-~~l~~l~  239 (662)
                      +|+++|+.++++|.+||..||+++|.++|.++|+++||.+|++.++.+|+..||.+++.++|++||+|++++ ++++.++
T Consensus       258 ~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~  337 (759)
T 2hye_C          258 EYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALL  337 (759)
T ss_dssp             HHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHH
Confidence            999999999999999999999999999999999999999999999988999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHhchhccCccchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHh
Q 006074          240 QALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL  319 (662)
Q Consensus       240 ~~~~~~i~~~g~~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~~~~~~~~af~~~ln~~~~~~~e~La~y~d~~l  319 (662)
                      ..|++||++.|.+++.+.+++..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.++.++||+||+|||.+|
T Consensus       338 ~~~~~~I~~~g~~iv~~~~~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~L  417 (759)
T 2hye_C          338 QHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKL  417 (759)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Confidence            99999999999999988777789999999999999999999999999999999999999999987789999999999999


Q ss_pred             hcCCCCCCHHHHHhhhhccceeeEeccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhccchhHhHHHHHhh
Q 006074          320 RAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKD  399 (662)
Q Consensus       320 k~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D  399 (662)
                      |+|.++.+++|++..+++++.+|+|+++||+|+.+|+++||+|||.+++++.|.|+.||++||.+||.+||++|++||+|
T Consensus       418 k~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~D  497 (759)
T 2hye_C          418 RAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKD  497 (759)
T ss_dssp             SSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            99988888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCccEEEEEeecCCCCCCCCCCccCChhHHHHHHHHHHHHhhcCCCeeeEeccCCceE
Q 006074          400 IELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHC  479 (662)
Q Consensus       400 ~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~  479 (662)
                      +..|++++..|++++.+ .+.+.+++|+|.|||+++||..+..++.+|++|+.+++.|++||..+|+||+|+|.+++|+|
T Consensus       498 i~~S~~l~~~f~~~~~~-~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~  576 (759)
T 2hye_C          498 MELSKDIMVHFKQHMQN-QSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHA  576 (759)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEE
T ss_pred             HHHHHHHHHHHHHHHhc-ccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcE
Confidence            99999999999998754 33345789999999999999998889999999999999999999999999999999999999


Q ss_pred             EEEEEecCceEEEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecCCCCCCCCCCCeEEE
Q 006074          480 VLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVF  559 (662)
Q Consensus       480 ~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~  559 (662)
                      +|+++|++|+++++||++||+||++||+.+++|++||++.||+|+++|+++|.+|++++.+||.++|+++++.+++.|.+
T Consensus       577 ~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~l  656 (759)
T 2hye_C          577 VLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIF  656 (759)
T ss_dssp             EEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEE
T ss_pred             EEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEe
Confidence            99999999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             ecCCCCCcceEEecccccccchhhhhhhhHHHHHhhHhhhhhhhhhhhcCCCCCChHHHHHHHHHhcCCCCChhhHHHHH
Q 006074          560 NEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRI  639 (662)
Q Consensus       560 N~~f~~~~~~i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~I  639 (662)
                      |.+|+++.+|++|+.++.+++.+|++.+.+.+.+||++.||||||||||++|+|+|++|+.+|+++++|+|++.+||+||
T Consensus       657 N~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~I  736 (759)
T 2hye_C          657 NGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRI  736 (759)
T ss_dssp             CCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred             eccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999887777778888888999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccccccCCCCCceeecC
Q 006074          640 ESLIDREYLERDKNNPQIYNYLA  662 (662)
Q Consensus       640 e~Liereyi~r~~~~~~~y~Yia  662 (662)
                      |+||+||||+|+++|+++|+|+|
T Consensus       737 e~LIereYleR~~~~~~~y~YlA  759 (759)
T 2hye_C          737 ESLIDRDYMERDKDNPNQYHYVA  759 (759)
T ss_dssp             HHHHHTTSCBCCSSCTTEEECCC
T ss_pred             HHHhcccceecCCCCCCeeEecC
Confidence            99999999999999999999998
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Back     alignment and structure
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Back     alignment and structure
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A Back     alignment and structure
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} Back     alignment and structure
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Back     alignment and structure
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} Back     alignment and structure
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 Back     alignment and structure
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 Back     alignment and structure
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Back     alignment and structure
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* Back     alignment and structure
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* Back     alignment and structure
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 Back     alignment and structure
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 662
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 1e-109
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 2e-99
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 2e-90
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 3e-73
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 5e-35
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 2e-32
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 8e-31
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  329 bits (844), Expect = e-109
 Identities = 182/274 (66%), Positives = 222/274 (81%), Gaps = 1/274 (0%)

Query: 305 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 364
           N+PAELIAK +D KLRAGNK  ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAKRLL
Sbjct: 1   NKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLL 60

Query: 365 LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGI 424
           +GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q ++     I
Sbjct: 61  VGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-SGPI 119

Query: 425 EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAE 484
           +++V++LT GYWPTY PM+V L  E+   Q++FK FYL K+SGR+L WQ +LGH VLKAE
Sbjct: 120 DLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAE 179

Query: 485 FPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 544
           F +GKKE  VSLFQT+VL++FN+    SF++IK ATGIED ELRRTLQSLACGK RVL K
Sbjct: 180 FKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIK 239

Query: 545 LPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK 578
            PKG++VED D F+FN  F   L+RIK+N IQMK
Sbjct: 240 SPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMK 273
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.91
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.89
d1mkma175 Transcriptional regulator IclR, N-terminal domain 91.8
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 91.02
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 90.49
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 90.19
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 90.14
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 89.93
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 89.21
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 88.88
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 88.42
d1z91a1137 Organic hydroperoxide resistance transcriptional r 88.35
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 87.9
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 87.69
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 87.67
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 87.35
d1u2wa1108 Cadmium efflux system accessory protein CadC {Stap 87.18
d1p4xa2125 Staphylococcal accessory regulator A homolog, SarS 87.03
d1s3ja_143 Putative transcriptional regulator YusO {Bacillus 87.01
d1dpua_69 C-terminal domain of RPA32 {Human (Homo sapiens) [ 86.83
d1hsja1115 Staphylococcal accessory regulator A homolog, SarR 86.65
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 86.65
d1jgsa_138 Multiple antibiotic resistance repressor, MarR {Es 86.53
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 85.99
d2fbia1136 Probable transcriptional regulator PA4135 {Pseudom 85.93
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 85.24
d3broa1135 Transcriptional regulator OEOE1854 {Oenococcus oen 84.97
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 84.8
d1p6ra_82 Penicillinase repressor BlaI {Bacillus licheniform 84.68
d2fxaa1162 Protease production regulatory protein Hpr {Bacill 84.45
d2bv6a1136 Transcriptional regulator MgrA {Staphylococcus aur 84.11
d3deua1140 Transcriptional regulator SlyA {Salmonella typhimu 84.08
d2hr3a1145 Probable transcriptional regulator PA3067 {Pseudom 84.0
d2fbha1137 Transcriptional regulator PA3341 {Pseudomonas aeru 82.3
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 81.69
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 81.02
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 80.9
d1z6ra170 Mlc protein N-terminal domain {Escherichia coli [T 80.32
d1xd7a_127 Hypothetical protein ywnA {Bacillus subtilis [TaxI 80.31
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-56  Score=454.01  Aligned_cols=271  Identities=66%  Similarity=1.059  Sum_probs=259.8

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCHHHHHhhhhccceeeEeccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHh
Q 006074          306 RPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTEC  385 (662)
Q Consensus       306 ~~~e~La~y~d~~lk~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~  385 (662)
                      ++||+||+|||.++|+|.++.++++++..+++++.+|+|++|||+|+.+|+++||+|||.+++.+.+.|..+|++|+.+|
T Consensus         2 ~~~e~la~y~D~~lr~~~k~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L~~~~   81 (273)
T d2hyec3           2 KPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHEC   81 (273)
T ss_dssp             HHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence            57999999999999998888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHhHHHHHhhHHHHHHHHHHHHHHhhhccCCCCCccEEEEEeecCCCCCCCCCCccCChhHHHHHHHHHHHHhhcC
Q 006074          386 GSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKY  465 (662)
Q Consensus       386 G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~  465 (662)
                      |.+++++|++|++|++.|.+++.+|++++.+ .....+++|+|.||++++||..+..++.+|++++.+++.|++||.++|
T Consensus        82 g~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~-~~~~~~~~~~v~vLs~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~~  160 (273)
T d2hyec3          82 GAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKH  160 (273)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCCCceEEEEeeCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999998765 444467999999999999999998899999999999999999999999


Q ss_pred             CCeeeEeccCCceEEEEEEecCceEEEEecHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhHhhcCCccceecC
Q 006074          466 SGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL  545 (662)
Q Consensus       466 ~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~  545 (662)
                      ++|+|.|.+++|+|+|+++|++|++++.||++||+||++||+.+++|+++|++.||+++++++++|.+|+.++.+||.+.
T Consensus       161 ~~RkL~w~~~ls~~~l~~~~~~~~~~l~~s~~Qa~ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k~~iL~~~  240 (273)
T d2hyec3         161 SGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKS  240 (273)
T ss_dssp             CSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEET
T ss_pred             CCCEEEEecCCccEEEEEEECCCcEEEEEcHHHHHHHHHhcCCCCCcHHHHHHHHCcCHHHHHHHHHHHHhcccceeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             CCCCCCCCCCeEEEecCCCCCcceEEeccccc
Q 006074          546 PKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQM  577 (662)
Q Consensus       546 ~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~  577 (662)
                      ++++++.+++.|.+|.+|+++.+|++|++|+.
T Consensus       241 ~~~~~~~~~~~~~~N~~F~~k~~kiki~~~~~  272 (273)
T d2hyec3         241 PKGKEVEDGDKFIFNGEFKHKLFRIKINQIQM  272 (273)
T ss_dssp             TCSSSCCSSCEEEECCCCCCSCSSEECGGGGG
T ss_pred             CCCCcCCCCCEEEEeccCCCCCeEEeeccccc
Confidence            99999999999999999999999999998764
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure