Citrus Sinensis ID: 006102

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-
MGFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
cccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHccccEEcccEEEcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccHHHHHHHHHEEEEEEccHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHccHHHHHEHcccHHHcccEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccccccccHHHHccHHHHHHEEcccEEEcccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHcccccccccccccccccccccEEcc
mgflvdsqrdgggdggygmfGCCVRtlvrrkqvdsvhtkpershqklaknltiphlvAIGVGSTIGAGVYILVGTvarehsgpaLALSFLIAGIASAFSAFCYAELasrcpsagsayhYSYICVGEGVAWLIGWALILEYTIGgsavargispnlamlfgsadslpffmarqqipglgiivDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSylgfktgwsgyelptgyfpfgvngmlagSATVFFAFIGFDAVASTAEevknpqrdlplgigTALSICCALYMLVSIVIVGlvpyyemdpdtpissafashgmhWASYVITIGAVTALCSTLmgsilpqprILMAMArdgllppffsdvnkttqvpvksTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILryvppdevpvpstlqssidsVSLQfsqsslsisgkslvddvgtlretepllakkggavsyplIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYaasdlslprLLQLTLCGIGGALLLCGLIVLTsinqdearhnfghaggfmcpfvpllpIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRthsslldavyvpaahvdeiyrssrdsfpathvdgtycrsrdtlla
mgflvdsqrdgggdggyGMFGCCVRTLVRRKQvdsvhtkpershqklaknltiPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPllakkggavsyplIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYrssrdsfpathvdgtycrsrdtlla
MGFLVDSQRDgggdggygmfgCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLqssidsvslqfsqsslsisgkslVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQltlcgiggalllcglivltSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
**************GGYGMFGCCVRTLVRRKQV*************LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD*********************************DVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYC********
****************YGMFGCCVRTLVRRK*******************LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDE*****GHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGR*********************************************
MGFLVDSQRDGGGDGGYGMFGCCVRTLVRR**************QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
*GFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVD*********HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD*************************************************GAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS******************************************
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MGFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATHVDGTYCRSRDTLLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query661 2.2.26 [Sep-21-2011]
Q9ASS7635 Cationic amino acid trans yes no 0.950 0.988 0.727 0.0
Q8GYB4609 Cationic amino acid trans no no 0.910 0.988 0.710 0.0
Q8W4K3600 Cationic amino acid trans no no 0.885 0.975 0.627 0.0
Q09143622 High affinity cationic am yes no 0.845 0.898 0.373 2e-98
P30825629 High affinity cationic am yes no 0.875 0.920 0.361 8e-98
B5D5N9657 Low affinity cationic ami no no 0.853 0.858 0.382 4e-97
P18581657 Low affinity cationic ami no no 0.853 0.858 0.377 4e-97
B3TP03654 Low affinity cationic ami no no 0.850 0.859 0.373 2e-96
P30823624 High affinity cationic am yes no 0.851 0.902 0.357 3e-96
P52569658 Low affinity cationic ami no no 0.889 0.893 0.362 2e-95
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/649 (72%), Positives = 540/649 (83%), Gaps = 21/649 (3%)

Query: 1   MGFLVDSQRDGGGDG-GYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAI 59
           MGFLVD+Q++GGG   GY      VR+LVRRKQVDS + +    HQ LA+ LT+PHLVAI
Sbjct: 1   MGFLVDTQKEGGGHSWGY------VRSLVRRKQVDSANGQ-SHGHQ-LARALTVPHLVAI 52

Query: 60  GVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHY 119
           GVG+TIGAGVYILVGTVAREHSGP+LALSFLIAGIA+  SAFCYAEL+SRCPSAGSAYHY
Sbjct: 53  GVGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSAFCYAELSSRCPSAGSAYHY 112

Query: 120 SYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGI 179
           SYICVGEGVAW+IGWALILEYTIGGSAVARGISPNLA++FG  D LP  +AR QIPGL I
Sbjct: 113 SYICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFGGEDGLPAILARHQIPGLDI 172

Query: 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL 239
           +VDPCAAILV +VTGLLC+GIKEST AQ IVT  NV  +LFVI+AGSYLGFKTGW GYEL
Sbjct: 173 VVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVCVLLFVIVAGSYLGFKTGWPGYEL 232

Query: 240 PTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYML 299
           PTG+FPFGV+GM AGSATVFFAFIGFD+VASTAEEV+NPQRDLP+GIG AL +CC+LYM+
Sbjct: 233 PTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVRNPQRDLPIGIGLALLLCCSLYMM 292

Query: 300 VSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359
           VSIVIVGL+PYY MDPDTPISSAFASH M WA Y+IT+GAV ALCS LMG++LPQPRILM
Sbjct: 293 VSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLITLGAVMALCSALMGALLPQPRILM 352

Query: 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMV 419
           AMARDGLLP  FSD+NK TQVPVK+T+ TG+ AA LAFFMDVS LAGMVSVGTLLAFTMV
Sbjct: 353 AMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLAFFMDVSQLAGMVSVGTLLAFTMV 412

Query: 420 AISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRET-EPLLA 478
           AISVLILRYVPPDE P+PS+LQ  IDSVS    +++ S         VGT   + +PL+ 
Sbjct: 413 AISVLILRYVPPDEQPLPSSLQERIDSVSFICGETTSS-------GHVGTSDSSHQPLIV 465

Query: 479 KKGGAVSYPLIKQVQD----ILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQL 534
                V  PLIK  +     +L+EE RR VAGW+IMFTC+G F+L+YAAS LS P L++ 
Sbjct: 466 NNDALVDVPLIKNQEALGCLVLSEETRRIVAGWSIMFTCVGAFLLSYAASSLSFPGLIRY 525

Query: 535 TLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGS 594
            LCG+GG LLL GLI L+SI+QD+ARH FGH+GG+MCPFVPLLPI CILIN+YLL+NLGS
Sbjct: 526 PLCGVGGCLLLAGLIALSSIDQDDARHTFGHSGGYMCPFVPLLPIICILINMYLLVNLGS 585

Query: 595 ATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSF 643
           ATWARVSVWL+IGV+VYVFYGR +SSL +AVYV  AH +EIYR    S 
Sbjct: 586 ATWARVSVWLLIGVIVYVFYGRKNSSLANAVYVTTAHAEEIYREHEGSL 634
Permease involved in the transport of the cationic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 Back     alignment and function description
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 Back     alignment and function description
>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3 Back     alignment and function description
>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 Back     alignment and function description
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query661
255569446643 cationic amino acid transporter, putativ 0.965 0.992 0.769 0.0
224123888640 cationic amino acid transporter [Populus 0.959 0.990 0.758 0.0
224144852641 cationic amino acid transporter [Populus 0.962 0.992 0.765 0.0
297840681635 hypothetical protein ARALYDRAFT_475412 [ 0.950 0.988 0.722 0.0
30696198635 cationic amino acid transporter 2 [Arabi 0.950 0.988 0.727 0.0
225439247639 PREDICTED: high affinity cationic amino 0.930 0.962 0.766 0.0
23306414635 Unknown protein [Arabidopsis thaliana] 0.950 0.988 0.725 0.0
296085920619 unnamed protein product [Vitis vinifera] 0.925 0.988 0.768 0.0
356570337641 PREDICTED: cationic amino acid transport 0.927 0.956 0.692 0.0
356514041640 PREDICTED: low affinity cationic amino a 0.956 0.987 0.680 0.0
>gi|255569446|ref|XP_002525690.1| cationic amino acid transporter, putative [Ricinus communis] gi|223534990|gb|EEF36673.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/647 (76%), Positives = 555/647 (85%), Gaps = 9/647 (1%)

Query: 1   MGFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIG 60
           MGFLVDSQ++G      G+FG C+R+LVRRKQVDS+H K   SH +LAK L++PHL+AIG
Sbjct: 1   MGFLVDSQKEGK----LGVFGGCIRSLVRRKQVDSIHAKAHNSHHQLAKELSVPHLIAIG 56

Query: 61  VGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120
           VGSTIGAGVYILVGTVAREHSGPALA+SFLIAGIA+A SAFCYAELASRCPSAGSAYHYS
Sbjct: 57  VGSTIGAGVYILVGTVAREHSGPALAISFLIAGIAAALSAFCYAELASRCPSAGSAYHYS 116

Query: 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGII 180
           YICVGEG AWLIGWALILEYTIGGSAVARGISPNLA+LFG  DSLP F+ARQ IPGL I+
Sbjct: 117 YICVGEGAAWLIGWALILEYTIGGSAVARGISPNLALLFGGQDSLPAFLARQHIPGLDIV 176

Query: 181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP 240
           VDPCAA+LV+IVTGLLCVGIKEST+ QAIVTT NV AMLFVII GSYLGFKTGW GYELP
Sbjct: 177 VDPCAAVLVVIVTGLLCVGIKESTLVQAIVTTVNVCAMLFVIIVGSYLGFKTGWPGYELP 236

Query: 241 TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLV 300
           TGYF FGV+GMLAGSATVFFA+IGFD+VASTAEEVKNPQRDLP+GIG ALSICC+LYMLV
Sbjct: 237 TGYFAFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPMGIGFALSICCSLYMLV 296

Query: 301 SIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360
           S+VIVGLVPY+ M+PDTPISSAFA HGMHWA+Y+IT GAV ALCSTLMGS+LPQPRILMA
Sbjct: 297 SVVIVGLVPYFAMNPDTPISSAFAEHGMHWAAYIITAGAVMALCSTLMGSLLPQPRILMA 356

Query: 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVA 420
           MARDGLLPPFFSDVN++TQ+P+KST+ TG  AA LAF M+V  LAGMVSVGTLLAFTMVA
Sbjct: 357 MARDGLLPPFFSDVNRSTQIPIKSTLTTGAGAAVLAFCMEVDQLAGMVSVGTLLAFTMVA 416

Query: 421 ISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKK 480
           ISVLILRYVPPDEVP PS+LQ +IDSVSL +S      +G+      GT   T PLL K 
Sbjct: 417 ISVLILRYVPPDEVPFPSSLQDTIDSVSLLYSAKGQDTNGEKSEVHAGT-SSTLPLLGKT 475

Query: 481 GGAVSYPLIKQVQD----ILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTL 536
             AV Y +I + +     +L EENRR +AGWTI FTCIG F+LTY+A+DLSLP   + TL
Sbjct: 476 NAAVDYHVIGKEEAQGSFLLKEENRRKIAGWTIAFTCIGAFLLTYSATDLSLPGPFRFTL 535

Query: 537 CGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSAT 596
           CG+GGA+LL GL+VLT I QD+ARH+FGH+GGF+CP VPLLPI CILIN YLLINLG+AT
Sbjct: 536 CGVGGAVLLFGLVVLTCIEQDDARHSFGHSGGFICPLVPLLPIICILINTYLLINLGAAT 595

Query: 597 WARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSF 643
           W RVSVWLIIGV VY FYGR HSSLL AVYVPAAH DEIYRSS DS 
Sbjct: 596 WTRVSVWLIIGVFVYAFYGRAHSSLLHAVYVPAAHADEIYRSSGDSL 642

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123888|ref|XP_002319189.1| cationic amino acid transporter [Populus trichocarpa] gi|222857565|gb|EEE95112.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224144852|ref|XP_002325438.1| cationic amino acid transporter [Populus trichocarpa] gi|222862313|gb|EEE99819.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297840681|ref|XP_002888222.1| hypothetical protein ARALYDRAFT_475412 [Arabidopsis lyrata subsp. lyrata] gi|297334063|gb|EFH64481.1| hypothetical protein ARALYDRAFT_475412 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30696198|ref|NP_849822.1| cationic amino acid transporter 2 [Arabidopsis thaliana] gi|75308011|sp|Q9ASS7.1|CAAT2_ARATH RecName: Full=Cationic amino acid transporter 2, vacuolar gi|13605811|gb|AAK32891.1|AF367304_1 AT5g36940/MLF18_60 [Arabidopsis thaliana] gi|209529757|gb|ACI49773.1| At1g58030 [Arabidopsis thaliana] gi|332195367|gb|AEE33488.1| cationic amino acid transporter 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225439247|ref|XP_002271330.1| PREDICTED: high affinity cationic amino acid transporter 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|23306414|gb|AAN17434.1| Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296085920|emb|CBI31244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356570337|ref|XP_003553346.1| PREDICTED: cationic amino acid transporter 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356514041|ref|XP_003525716.1| PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query661
TAIR|locus:2196245635 CAT2 "cationic amino acid tran 0.950 0.988 0.692 5.6e-235
TAIR|locus:2167462609 CAT3 "cationic amino acid tran 0.632 0.686 0.790 4.9e-227
ZFIN|ZDB-GENE-041212-5641 slc7a2 "solute carrier family 0.285 0.294 0.476 2.7e-103
UNIPROTKB|F1P388624 SLC7A1 "Uncharacterized protei 0.285 0.302 0.460 1.5e-102
UNIPROTKB|P30825629 SLC7A1 "High affinity cationic 0.285 0.300 0.455 8e-102
UNIPROTKB|E2QU34629 SLC7A1 "Uncharacterized protei 0.285 0.300 0.444 1e-101
UNIPROTKB|B3TP03654 SLC7A2 "Low affinity cationic 0.311 0.314 0.451 1.3e-101
UNIPROTKB|F1N5P6629 SLC7A1 "Uncharacterized protei 0.285 0.300 0.449 1.7e-101
RGD|68387657 Slc7a2 "solute carrier family 0.284 0.286 0.481 9.1e-101
UNIPROTKB|A8I499657 SLC7A2 "Low affinity cationic 0.284 0.286 0.486 1.5e-100
TAIR|locus:2196245 CAT2 "cationic amino acid transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2266 (802.7 bits), Expect = 5.6e-235, P = 5.6e-235
 Identities = 448/647 (69%), Positives = 511/647 (78%)

Query:     1 MGFLVDSQRDXXXXXXXXXXXCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIG 60
             MGFLVD+Q++             VR+LVRRKQVDS + +    HQ LA+ LT+PHLVAIG
Sbjct:     1 MGFLVDTQKEGGGHSWGY-----VRSLVRRKQVDSANGQ-SHGHQ-LARALTVPHLVAIG 53

Query:    61 VGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120
             VG+TIGAGVYILVGTVAREHSGP+LALSFLIAGIA+  SAFCYAEL+SRCPSAGSAYHYS
Sbjct:    54 VGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSAFCYAELSSRCPSAGSAYHYS 113

Query:   121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGII 180
             YICVGEGVAW+IGWALILEYTIGGSAVARGISPNLA++FG  D LP  +AR QIPGL I+
Sbjct:   114 YICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFGGEDGLPAILARHQIPGLDIV 173

Query:   181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP 240
             VDPCAAILV +VTGLLC+GIKEST AQ IVT  NV  +LFVI+AGSYLGFKTGW GYELP
Sbjct:   174 VDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVCVLLFVIVAGSYLGFKTGWPGYELP 233

Query:   241 TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLV 300
             TG+FPFGV+GM AGSATVFFAFIGFD+VASTAEEV+NPQRDLP+GIG AL +CC+LYM+V
Sbjct:   234 TGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVRNPQRDLPIGIGLALLLCCSLYMMV 293

Query:   301 SIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360
             SIVIVGL+PYY MDPDTPISSAFASH M WA Y+IT+GAV ALCS LMG++LPQPRILMA
Sbjct:   294 SIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLITLGAVMALCSALMGALLPQPRILMA 353

Query:   361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVA 420
             MARDGLLP  FSD+NK TQVPVK+T+ TG+ AA LAFFMDVS LAGMVSVGTLLAFTMVA
Sbjct:   354 MARDGLLPSIFSDINKRTQVPVKATVATGLCAATLAFFMDVSQLAGMVSVGTLLAFTMVA 413

Query:   421 ISVLILRYVPPDEVPVPSTLXXXXXXXXXXXXXXXXXXXXXXXVDDVGTLRET-EPLLAK 479
             ISVLILRYVPPDE P+PS+L                          VGT   + +PL+  
Sbjct:   414 ISVLILRYVPPDEQPLPSSLQERIDSVSFICGETTSSGH-------VGTSDSSHQPLIVN 466

Query:   480 KGGAVSYPLIKQVQD----ILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQXX 535
                 V  PLIK  +     +L+EE RR VAGW+IMFTC+G F+L+YAAS LS P L++  
Sbjct:   467 NDALVDVPLIKNQEALGCLVLSEETRRIVAGWSIMFTCVGAFLLSYAASSLSFPGLIRYP 526

Query:   536 XXXXXXXXXXXXXXXXXSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSA 595
                              SI+QD+ARH FGH+GG+MCPFVPLLPI CILIN+YLL+NLGSA
Sbjct:   527 LCGVGGCLLLAGLIALSSIDQDDARHTFGHSGGYMCPFVPLLPIICILINMYLLVNLGSA 586

Query:   596 TWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDS 642
             TWARVSVWL+IGV+VYVFYGR +SSL +AVYV  AH +EIYR    S
Sbjct:   587 TWARVSVWLLIGVIVYVFYGRKNSSLANAVYVTTAHAEEIYREHEGS 633
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=IEA;ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-5 slc7a2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P30825 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU34 SLC7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B3TP03 SLC7A2 "Low affinity cationic amino acid transporter 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5P6 SLC7A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|68387 Slc7a2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A8I499 SLC7A2 "Low affinity cationic amino acid transporter 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ASS7CAAT2_ARATHNo assigned EC number0.72720.95000.9889yesno
P30825CTR1_HUMANNo assigned EC number0.36110.87590.9205yesno
P30823CTR1_RATNo assigned EC number0.35720.85170.9022yesno
Q09143CTR1_MOUSENo assigned EC number0.37360.84560.8987yesno
Q8GYB4CAAT3_ARATHNo assigned EC number0.71040.91070.9885nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrCAT2
cationic amino acid transporter (640 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GH3-8
GH3 family protein (587 aa)
      • 0.510
MYB102
hypothetical protein (118 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 1e-144
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 6e-79
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 3e-63
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 3e-44
pfam00324473 pfam00324, AA_permease, Amino acid permease 2e-31
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 2e-31
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 6e-30
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 2e-27
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 9e-23
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 3e-22
pfam1390651 pfam13906, AA_permease_C, C-terminus of AA_permeas 2e-21
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 4e-21
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 5e-19
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 5e-16
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 1e-15
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 2e-15
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 3e-15
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 5e-15
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 5e-14
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 7e-14
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 3e-13
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 8e-13
PRK10580457 PRK10580, proY, putative proline-specific permease 8e-13
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 1e-12
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 3e-12
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 9e-12
PRK10746461 PRK10746, PRK10746, putative transport protein Yif 1e-10
PRK10655438 PRK10655, potE, putrescine transporter; Provisiona 4e-08
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 5e-08
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 6e-08
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 9e-06
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 2e-05
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 3e-04
TIGR00930 953 TIGR00930, 2a30, K-Cl cotransporter 4e-04
PRK10435435 PRK10435, cadB, lysine/cadaverine antiporter; Prov 7e-04
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 0.002
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  430 bits (1106), Expect = e-144
 Identities = 236/606 (38%), Positives = 326/606 (53%), Gaps = 69/606 (11%)

Query: 25  RTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA 84
           R L+RRK VD       R   K+ + LT   L+A+G+GSTIGAG+Y+L G VAR  SGPA
Sbjct: 8   RCLIRRKIVDL----DSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA 63

Query: 85  LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGG 144
           + LSFLI+G+A+  S FCYAE  +R P AGSAY YSY+ VGE  A++ GW LILEY IG 
Sbjct: 64  IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGT 123

Query: 145 SAVARGISPNLAMLFGS--ADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202
           +AVAR  S     L           +       GL    D  A  L+L++  LL  G+KE
Sbjct: 124 AAVARSWSAYFDELLNKQIGQFRRTYFKLNY-DGLAEYPDFFAVCLILLLAVLLSFGVKE 182

Query: 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP--TGYFPFGVNGMLAGSATVFF 260
           S     I T  N+L +LFVIIAG        WS  E     G+ P+G  G+L+G+AT FF
Sbjct: 183 SAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFF 242

Query: 261 AFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPIS 320
           AFIGFDA+A+T EEVKNPQR +P+GI T+L +C   Y L+S  +  ++PYY +DPD P  
Sbjct: 243 AFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFP 302

Query: 321 SAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQV 380
            AF   G   A Y++ +GA+  + ++L+G + P PR++ AMARDGLL  + + +N  T+ 
Sbjct: 303 VAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKT 362

Query: 381 PVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP------PDEV 434
           P+ +T+V+G +AA +AF  D+ AL  ++S+GTLLA+++VA  VLILRY P        + 
Sbjct: 363 PINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDT 422

Query: 435 PVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQD 494
               TL S +   S   SQS    S ++L                        LI  +  
Sbjct: 423 DEKDTLDSWVPFTSKSESQSE-GFSLRTLF---------------------SGLILGLSI 460

Query: 495 ILNEENRRTVAGWTIMF-TCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTS 553
           +       T  G   +      + +LT                      L+L  L+VLT 
Sbjct: 461 L-------TTYGRAAIAEEAWSIALLT--------------------LFLVLFLLVVLTI 493

Query: 554 INQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVF 613
             Q + +        F  P VP LP   ILIN++L++ L + TW R ++W+ IG L+Y  
Sbjct: 494 WRQPQNKQKV----AFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFL 549

Query: 614 YGRTHS 619
           YG  HS
Sbjct: 550 YGIRHS 555

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional Back     alignment and domain information
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter Back     alignment and domain information
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 661
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 100.0
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.92
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.91
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.89
PHA02764399 hypothetical protein; Provisional 99.85
PF1390651 AA_permease_C: C-terminus of AA_permease 99.82
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.8
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.8
TIGR00814397 stp serine transporter. The HAAAP family includes 99.77
PRK10483414 tryptophan permease; Provisional 99.76
PRK09664415 tryptophan permease TnaB; Provisional 99.75
KOG2083643 consensus Na+/K+ symporter [Inorganic ion transpor 99.74
PRK15132403 tyrosine transporter TyrP; Provisional 99.73
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.66
PF03845320 Spore_permease: Spore germination protein; InterPr 99.59
PRK13629443 threonine/serine transporter TdcC; Provisional 99.56
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.34
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.31
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.19
PTZ00206467 amino acid transporter; Provisional 99.16
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.16
PLN03074473 auxin influx permease; Provisional 99.04
KOG1304449 consensus Amino acid transporters [Amino acid tran 98.9
COG3949349 Uncharacterized membrane protein [Function unknown 98.87
PRK11375484 allantoin permease; Provisional 98.72
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.66
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.47
TIGR00813407 sss transporter, SSS family. have different number 98.42
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.42
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.4
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.3
COG1457442 CodB Purine-cytosine permease and related proteins 98.27
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.26
PRK11017404 codB cytosine permease; Provisional 98.12
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.06
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.04
PRK12488549 acetate permease; Provisional 97.93
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.92
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.9
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.87
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.75
PRK00701439 manganese transport protein MntH; Reviewed 97.73
KOG1305411 consensus Amino acid transporter protein [Amino ac 97.7
PRK09395551 actP acetate permease; Provisional 97.66
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.65
PRK15419502 proline:sodium symporter PutP; Provisional 97.64
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 97.54
PRK15433439 branched-chain amino acid transport system 2 carri 97.27
PRK10484523 putative transporter; Provisional 97.27
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.14
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.01
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 95.85
COG4147529 DhlC Predicted symporter [General function predict 95.76
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.39
PLN00151852 potassium transporter; Provisional 95.04
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 94.53
KOG1286554 consensus Amino acid transporters [Amino acid tran 93.98
PLN00149779 potassium transporter; Provisional 93.93
PRK09950506 putative transporter; Provisional 93.42
KOG2466572 consensus Uridine permease/thiamine transporter/al 92.23
PLN00148 785 potassium transporter; Provisional 91.98
TIGR00794688 kup potassium uptake protein. Proteins of the KUP 90.92
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 90.91
PRK10745622 trkD potassium transport protein Kup; Provisional 89.75
PLN00150779 potassium ion transporter family protein; Provisio 87.86
KOG3660629 consensus Sodium-neurotransmitter symporter [Signa 87.1
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 86.26
KOG4303524 consensus Vesicular inhibitory amino acid transpor 83.56
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 83.31
PRK09928679 choline transport protein BetT; Provisional 81.79
COG1292537 BetT Choline-glycine betaine transporter [Cell env 81.57
PF02990521 EMP70: Endomembrane protein 70; InterPro: IPR00424 81.06
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=4.7e-79  Score=688.00  Aligned_cols=549  Identities=41%  Similarity=0.705  Sum_probs=434.8

Q ss_pred             hhhcccccccccCCcccCCCcccccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q 006102           21 GCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSA  100 (661)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~a  100 (661)
                      ..+.+++.|||+.++++.    ++++++|+++.+|++++++|.++|+|+|++++.++...+||+++++|+++++.+++.+
T Consensus         4 ~~~~~~~~r~k~~~~~~~----~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~a   79 (557)
T TIGR00906         4 LTFARCLIRRKIVDLDSR----EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSG   79 (557)
T ss_pred             HHHHHHHhccCCcccccc----cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            346678999999976211    2345999999999999999999999999999988777899999999999999999999


Q ss_pred             HHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-h-hhHhhhccCCCCc
Q 006102          101 FCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS-L-PFFMARQQIPGLG  178 (661)
Q Consensus       101 l~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~-~-p~~~~~~~~~~~~  178 (661)
                      +||+|+++++|++||.|.|+++.+||.+||++||+++++|....++++.++++|+..+++.... . ..... ...++..
T Consensus        80 l~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~-~~~~~l~  158 (557)
T TIGR00906        80 FCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLA  158 (557)
T ss_pred             HHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc-ccCCccc
Confidence            9999999999999999999999999999999999999999999999999999999988753110 0 00000 0112222


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC--CCCCCCCCchhHHHHHHHH
Q 006102          179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY--ELPTGYFPFGVNGMLAGSA  256 (661)
Q Consensus       179 ~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~--~~~~~~~p~g~~gi~~~~~  256 (661)
                      ...++++++++++++++|.+|+|.++++|++++.+|+++++++++.++.+.+.+||+..  .+++++.|+|+.|++.++.
T Consensus       159 ~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~  238 (557)
T TIGR00906       159 EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAA  238 (557)
T ss_pred             ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHH
Confidence            34567788888999999999999999999999999999999999999887777777532  1234688999999999999


Q ss_pred             HHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHH
Q 006102          257 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT  336 (661)
Q Consensus       257 ~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~  336 (661)
                      .++|+|.|||.+++++||+|||+||+|||++.++.+++++|+++++++++++|+++++.++|+..+++..|.++...++.
T Consensus       239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~  318 (557)
T TIGR00906       239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVA  318 (557)
T ss_pred             HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 006102          337 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAF  416 (661)
Q Consensus       337 i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y  416 (661)
                      ++++++++++.++.+++++|++|+|||||++|++|+|+|+|+++|++|+++.++++.++.++.+++.+.++.+++++++|
T Consensus       319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y  398 (557)
T TIGR00906       319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY  398 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCcccccccccccccc
Q 006102          417 TMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDIL  496 (661)
Q Consensus       417 ~~v~~~~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (661)
                      .+++++++++|++++...+  +             .+|.   +|++.+...+      +...+.+.+.            
T Consensus       399 ~lv~~~~l~lR~~~~~~~~--~-------------~~~~---~~~~~~~~~~------~~~~~~~~~~------------  442 (557)
T TIGR00906       399 SLVAACVLILRYQPGLVYG--Q-------------AKDT---DEKDTLDSWV------PFTSKSESQS------------  442 (557)
T ss_pred             HHHHHHHHHhhcccccccc--c-------------cccc---cccccccccc------cccccccccc------------
Confidence            9999999999998654210  0             0000   0000000000      0000000000            


Q ss_pred             ccccccchhhhhHHHHHHHHHHHHH-hhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccc
Q 006102          497 NEENRRTVAGWTIMFTCIGVFVLTY-AASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVP  575 (661)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P  575 (661)
                      + ....+..   ++..+++..+... ....... .++.+.++++.+++.++.+..+  ++|++.+    .+++||||++|
T Consensus       443 ~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~f~~p~~p  511 (557)
T TIGR00906       443 E-GFSLRTL---FSGLILGLSILTTYGRAAIAE-EAWSIALLTLFLVLFLLVVLTI--WRQPQNK----QKVAFKVPLVP  511 (557)
T ss_pred             c-chhHHHH---HHHHHHHHHHHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHH--hcCCCCC----CCCCCCCCCch
Confidence            0 0000000   1111122111111 1111111 2333344444333333333333  3344432    35689999999


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhccccccc
Q 006102          576 LLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSL  621 (661)
Q Consensus       576 ~~P~~si~~n~~lm~~l~~~t~~~~~vw~~ig~~iY~~yg~~hs~~  621 (661)
                      ++|+++|++|+|||.+|+..||+||.+|+++|+++||+||+||||+
T Consensus       512 ~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       512 FLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            9999999999999999999999999999999999999999999974

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 3e-15
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 7e-15
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 7e-13
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 1e-11
3lrb_A445 Structure Of E. Coli Adic Length = 445 2e-11
3ob6_A445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 1e-10
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 180/392 (45%), Gaps = 34/392 (8%)
Query: 49  KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELAS 108
           K L++   V++ VG  IGA ++ + G V  + +G  L  +F+++GI +   A+ Y +L +
Sbjct: 6   KKLSLWEAVSMAVGVMIGASIFSIFG-VGAKIAGRNLPETFILSGIYALLVAYSYTKLGA 64
Query: 109 RCPSAGSAYHYSYICVGE----GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS 164
           +  S      + +  +G+    G   ++ W   + Y I  +  A+G +     L  +   
Sbjct: 65  KIVSNAGPIAFIHKAIGDNIITGALSILLW---MSYVISIALFAKGFAGYFLPLINA--- 118
Query: 165 LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIA 224
            P       I  +GI         V   T L   G K    A+  +    +L +   I A
Sbjct: 119 -PINTFNIAITEIGI---------VAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA 168
Query: 225 GSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPL 284
           G      T    Y +P    P  V+GM+  SA  F +++GF  + + +E ++NP++++P 
Sbjct: 169 G----LITIHPSYVIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR 223
Query: 285 GIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGM--HWASYVITIGAVTA 342
            I  ++ I   +Y+ V+I  +G +P  E+   +  + A A+     +    +I+IGA+ +
Sbjct: 224 AIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFS 283
Query: 343 LCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVS 402
           + S +  +I     +  ++A+DG LP FF       +V  KST    I +A    F  + 
Sbjct: 284 ISSAMNATIYGGANVAYSLAKDGELPEFFER-----KVWFKSTEGLYITSALGVLFALLF 338
Query: 403 ALAGMVSVGTLLAFTMVAISVLILRYVPPDEV 434
            + G+ S+ T   F ++ + V++  Y+  DEV
Sbjct: 339 NMEGVASI-TSAVFMVIYLFVILSHYILIDEV 369
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-132
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-09
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 6e-87
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 3e-05
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 1e-78
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  396 bits (1020), Expect = e-132
 Identities = 80/396 (20%), Positives = 166/396 (41%), Gaps = 24/396 (6%)

Query: 45  QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYA 104
           +   K L++   V++ VG  IGA ++ + G  A + +G  L  +F+++GI +   A+ Y 
Sbjct: 2   ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYT 60

Query: 105 ELASRCPSAGSAYHYSYICVGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD 163
           +L ++  S      + +  +G+  +   +   L + Y I  +  A+G +     L  +  
Sbjct: 61  KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-- 118

Query: 164 SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVII 223
                      P     +      +V   T L   G K    A+  +    +L +   I 
Sbjct: 119 -----------PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIF 167

Query: 224 AGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283
           AG      +            P  V+GM+  SA  F +++GF  + + +E ++NP++++P
Sbjct: 168 AGLITIHPSYVI-----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222

Query: 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVT 341
             I  ++ I   +Y+ V+I  +G +P  E+    +  ++ A      +    +I+IGA+ 
Sbjct: 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALF 282

Query: 342 ALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV 401
           ++ S +  +I     +  ++A+DG LP FF           +   +T  +    A   ++
Sbjct: 283 SISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK--STEGLYITSALGVLFALLFNM 340

Query: 402 SALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVP 437
             +A + S   ++ +  V +S  IL         + 
Sbjct: 341 EGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIV 376
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query661
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.18
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.58
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.29
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.54
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=1.4e-52  Score=462.36  Aligned_cols=421  Identities=20%  Similarity=0.274  Sum_probs=360.1

Q ss_pred             ccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhc
Q 006102           46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG  125 (661)
Q Consensus        46 ~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G  125 (661)
                      +.+|++++++++++++|+++|+|+|..++.++  .+||..+++|+++++.+++.+++|+|+++++|++||.|.|+++.+|
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG   82 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence            47899999999999999999999999998754  3689999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102          126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI  205 (661)
Q Consensus       126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~  205 (661)
                      |.+||+.||.+++.+....++.+.+.+++++.+++...             .++...+++++++++++.+|.+|+|..++
T Consensus        83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A           83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------------DPWVLTITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------------SHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------------ccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            99999999999999999888888888777764432100             01112346788888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchH
Q 006102          206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG  285 (661)
Q Consensus       206 ~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~a  285 (661)
                      ++.+.+.++++.++++++.++.+.+.+++.+..++.+  ..++.+++.++..++|+|.|+|.+++++||+|||+|++||+
T Consensus       150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a  227 (445)
T 3l1l_A          150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA  227 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccC--CccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHH
Confidence            9999999999999988888877655444422111111  11366789999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhc
Q 006102          286 IGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD  364 (661)
Q Consensus       286 ii~s~~i~~v~Yil~~~~l~~~vp~~~~-~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~d  364 (661)
                      ++.+..+++++|++.+++..+..|+++. +.++|+.+++++.++++...++.++++++.+++.++.+++.+|++++||||
T Consensus       228 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d  307 (445)
T 3l1l_A          228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD  307 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998886 456799999999989999999999999999999999999999999999999


Q ss_pred             CCCccccccccccccCcchHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 006102          365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-------MDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVP  437 (661)
Q Consensus       365 g~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~-------~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~~~p~~  437 (661)
                      |.+|++|+|+||+ ++|.++++++++++.++.+.       ..++.+.++.+++.++.|.+.+++++++|+|+| + |  
T Consensus       308 g~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~-~--  382 (445)
T 3l1l_A          308 GLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-G-K--  382 (445)
T ss_dssp             TSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-G-G--
T ss_pred             CCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c-c--
Confidence            9999999999976 99999999999988776654       236789999999999999999999999998665 1 0  


Q ss_pred             CCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccccccccccchhhhhHHHHHHHHH
Q 006102          438 STLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVF  517 (661)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (661)
                                                                                                      
T Consensus       383 --------------------------------------------------------------------------------  382 (445)
T 3l1l_A          383 --------------------------------------------------------------------------------  382 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccchhHHHHHHHHHHHHhcCCHHHH
Q 006102          518 VLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATW  597 (661)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~si~~n~~lm~~l~~~t~  597 (661)
                                                                          |.|..|++|.++.+.+++++...++.++
T Consensus       383 ----------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (445)
T 3l1l_A          383 ----------------------------------------------------ARPAYLAVTTIAFLYCIWAVVGSGAKEV  410 (445)
T ss_dssp             ----------------------------------------------------GCTTTHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             ----------------------------------------------------ccchhHHHHHHHHHHHHHHHHHcCHHHH
Confidence                                                                2356788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccc
Q 006102          598 ARVSVWLIIGVLVYVFYGRTHSS  620 (661)
Q Consensus       598 ~~~~vw~~ig~~iY~~yg~~hs~  620 (661)
                      ....+|+++|+++|+.+.+|+.+
T Consensus       411 ~~~~~~~~~g~~~y~~~~~~~~~  433 (445)
T 3l1l_A          411 MWSFVTLMVITAMYALNYNRLHK  433 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhccc
Confidence            99999999999999987766554
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query661
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 96.9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.90  E-value=0.27  Score=51.38  Aligned_cols=71  Identities=17%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHH----HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102           52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLI----AGIASAFSAFCYAELASRCPSAGSAYHYSYICV  124 (661)
Q Consensus        52 ~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll----~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~  124 (661)
                      +..|.++-.+|..+|.|-+-.-...+.+++|.+-++.+++    .|+-.+..-++....++.-|.  +.+.......
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i--~~~~~i~~~~   80 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH--GTTPAIFYLL   80 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC--CSHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc--cHHHHHHHHh
Confidence            4578888899999999998888888888888764444443    333344444555555555443  3444443333