Citrus Sinensis ID: 006121
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 660 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P17 | 727 | Probable acyl-activating | yes | no | 0.937 | 0.851 | 0.695 | 0.0 | |
| F4KBF3 | 721 | Probable acyl-activating | no | no | 0.921 | 0.843 | 0.491 | 1e-164 | |
| A1U2S9 | 649 | Acetyl-coenzyme A synthet | yes | no | 0.728 | 0.741 | 0.265 | 4e-32 | |
| A8FUF1 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.716 | 0.727 | 0.265 | 7e-32 | |
| A9KY56 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.719 | 0.730 | 0.259 | 1e-31 | |
| Q88EH6 | 653 | Acetyl-coenzyme A synthet | yes | no | 0.719 | 0.727 | 0.266 | 3e-31 | |
| A6WM52 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.719 | 0.730 | 0.259 | 3e-31 | |
| A3D3E8 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.719 | 0.730 | 0.259 | 3e-31 | |
| A4Y7Y7 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.721 | 0.732 | 0.254 | 5e-31 | |
| A1RIK1 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.721 | 0.732 | 0.254 | 7e-31 |
| >sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/623 (69%), Positives = 513/623 (82%), Gaps = 4/623 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKA 622
TVGGY VQGRADDTMNLGGIK
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKT 620
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May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1495), Expect = e-164, Method: Compositional matrix adjust.
Identities = 306/622 (49%), Positives = 409/622 (65%), Gaps = 14/622 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
Y +V+ A AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNA-RNLRGVEYVAAEKPAGAYT 352
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 353 NILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASL 412
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F ST
Sbjct: 413 INGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGST 472
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L IL
Sbjct: 473 GEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFIL 532
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +R
Sbjct: 533 DEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFER 592
Query: 600 TVGGYIIVQGRADDTMNLGGIK 621
T GY GRADDTMNLGGIK
Sbjct: 593 TSKGYYRAHGRADDTMNLGGIK 614
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 145/547 (26%), Positives = 230/547 (42%), Gaps = 66/547 (12%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHG 164
P++ RA + ++++ +VE P +W K I + F + D + S
Sbjct: 11 PEVAERALVNKSQYEEMYRQ-SVEDPNTFWGEHGKRIDWIKPFTKVKNSTYDYNNLSIK- 68
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W VLN + CL H + + AI++ D D S +TY+EL E+ AN
Sbjct: 69 --WFEDGVLNASANCL--DRHLEQRGDQTAIIFEGD--DPSVSRNVTYRELYEETCKFAN 122
Query: 225 AL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
L D KGD + I MPM V + LA G + + F+ +A R+ K++
Sbjct: 123 VLKDQGVKKGDVVTIYMPMIVETAVAMLACARIGAIHSVVFGGFSPEALAARIVNGKSRF 182
Query: 284 IFTQDFILRGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDVGIPLRE-QDLSWKDF 335
+ T D LRGGR PL V A K IV+ GND +P E +DL ++D
Sbjct: 183 VITADEGLRGGRAIPLKKNVDSALKHEDDAKVDKVIVVSRTGNDQ-VPWTEGRDLRYEDL 241
Query: 336 L--SSVDYHPRP-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI 392
+ +S + P P N P++ +L++SG+TG PK + T + + ++
Sbjct: 242 MKNASAECQPEPMNAEDPLF--------MLYTSGSTGAPKGVLHTTGGYMVYASMTHQYV 293
Query: 393 -DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVT 447
D GDVY + GWV G IL+ NGA L++G P G+ V V
Sbjct: 294 FDYHDGDVYWCTADFGWVTGHSYILYGPLANGAITLLFEGVPNYPDSSRMGQVVDKHKVN 353
Query: 448 VLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505
+L T P+ ++A + +C++G ++ S GE ++ + W WY+ +I +
Sbjct: 354 ILYTAPTAIRALMAQGESCMDGTTRGSLKLLGSVGEP--INPEAW----EWYHRVIGN-- 405
Query: 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV------------ 553
S I + Q + G + A + +P+ QP +
Sbjct: 406 ----SKCPIVDTWWQTETGGILISPLPGAVDLKPGSATLPFFGVQPALVDNEGNILEGKT 461
Query: 554 -GEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 612
G + + + G R + DHE YKGM GD +R GY + GR D
Sbjct: 462 EGNLVILDSWPGQM-RTIYGDHERFVQTYFSTYKGMYFT--GDGARRDEDGYYWITGRVD 518
Query: 613 DTMNLGG 619
D +N+ G
Sbjct: 519 DVLNVSG 525
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Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A8FUF1|ACSA_SHESH Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 139/524 (26%), Positives = 222/524 (42%), Gaps = 51/524 (9%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECC 179
+++Q+ V +PE +W + I + P + +T H + W LN + C
Sbjct: 26 KMYQESIV-NPEGFWREHGQRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASANC 81
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
L H K+ + VAI+W D D +TY EL V ANAL + +GD + +
Sbjct: 82 L--DRHLEKDSDKVAIIWEGD--DAKDQRTITYGELHSDVCKFANALRSQGVRRGDIVTV 137
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM A ++ LA G V + F+ IA+R+ K+K I T D +RGGR P
Sbjct: 138 YMPMVPEAAVVMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITADEGVRGGRIIP 197
Query: 299 LYSKVLGAAPL-------KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
L + + A K IVL G DV + +D+ W+ + + H P
Sbjct: 198 LKANIDEALSHPDVDCVEKVIVLERTGGDVNW-VEGRDIKWESLMDTASEHCIPEEMG-- 254
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVM 410
+ + +L++SG+TG PK + T + A ++ D K G+VY ++GW+
Sbjct: 255 ---AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYAAMTHEYVFDYKDGEVYWCTADVGWIT 311
Query: 411 G-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAW--RNTNC 464
G +++ NGAT+ +++G P G+ V V +L T P+L++A
Sbjct: 312 GHSYMVYGPLANGATVLIHEGVPNYPTPARLGEMVDRHKVNILYTAPTLIRALMAEGKEQ 371
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQ 522
D + +R S GE ++ + W WYN +I E C + G +L
Sbjct: 372 FADFDGSSLRIMGSVGEP--INPEAW----RWYNEVIGHEHCPIVDTWWQTETGGILISP 425
Query: 523 AFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 575
GA T +A ++D G D G + + + G R + DH+
Sbjct: 426 LPGATDTKPGSATRPFFGVQPALVDNMGNII--DGATEGNLVILDSWPGQM-RTVFGDHD 482
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
++GM GD KR GY + GR DD +N+ G
Sbjct: 483 RFALTYFKTFRGMYFT--GDGAKRDEDGYYWITGRVDDVINVSG 524
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Shewanella sediminis (strain HAW-EB3) (taxid: 425104) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A9KY56|ACSA_SHEB9 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 136/525 (25%), Positives = 222/525 (42%), Gaps = 50/525 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL +V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHAEVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + ++D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGIVDW-VEDRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
E ++GM GD +R GY + GR DD +N+ G
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSG 524
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Shewanella baltica (strain OS195) (taxid: 399599) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 147/552 (26%), Positives = 235/552 (42%), Gaps = 77/552 (13%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGG- 165
P++ D T ++Q+ +V +P+ +W + I + P + +T H
Sbjct: 11 PEVAATTLTDEATYKAMYQQ-SVINPDGFWREQAQRIDWI---KPFTKVKQTSFDDHHVD 66
Query: 166 -TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + +AI+W D D S +TY+EL EQV AN
Sbjct: 67 IKWFADGTLNVSSNCL--DRHLEERGDQLAIIWEGD--DPSEHRNITYRELHEQVCKFAN 122
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
AL +GD + I MPM AV+ LA G + + F+ +A R+ K+K
Sbjct: 123 ALRGQDVHRGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKV 182
Query: 284 IFTQDFILRGGRKFPLYSKV-------LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336
+ T D +RGGR+ PL + V ++ K IV G D+ + +D+ ++D +
Sbjct: 183 VITADEGVRGGRRTPLKANVDLALTNPETSSVQKIIVCKRTGGDIAW-HQHRDIWYEDLM 241
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLK 395
H P + + IL++SG+TG+PK + T + A + D +
Sbjct: 242 KVASSHCAPKEMG-----AEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYR 296
Query: 396 VGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLG 450
G+VY ++GWV G I++ NGAT L++G P + R K V V +L
Sbjct: 297 PGEVYWCTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITR-VSKIVDKHKVNILY 355
Query: 451 TVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC-- 504
T P+ ++A +EG D + +R S GE ++ + W WY + E C
Sbjct: 356 TAPTAIRAMMAEGQAAVEGADGSSLRLLGSVGEP--INPEAW----NWYYKTVGKERCPI 409
Query: 505 ---------GGTELS-----SAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550
GG +S + GS +P FG G +I D
Sbjct: 410 VDTWWQTETGGILISPLPGATGLKPGSATRP-FFGVVPALVDNLGNLI----------DG 458
Query: 551 PCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 607
G + + + G S R L DH+ + YF+ ++GM GD +R GY +
Sbjct: 459 AAEGNLVILDSWPGQS-RSLYGDHDRFVDTYFK---TFRGMYFT--GDGARRDEDGYYWI 512
Query: 608 QGRADDTMNLGG 619
GR DD +N+ G
Sbjct: 513 TGRVDDVLNVSG 524
|
Pseudomonas putida (strain KT2440) (taxid: 160488) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 136/525 (25%), Positives = 220/525 (41%), Gaps = 50/525 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
E ++GM GD +R GY + GR DD +N+ G
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSG 524
|
Shewanella baltica (strain OS185) (taxid: 402882) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A3D3E8|ACSA_SHEB5 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 136/525 (25%), Positives = 220/525 (41%), Gaps = 50/525 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
E ++GM GD +R GY + GR DD +N+ G
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSG 524
|
Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A4Y7Y7|ACSA_SHEPC Acetyl-coenzyme A synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 134/526 (25%), Positives = 220/526 (41%), Gaps = 50/526 (9%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAE 177
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 23 QYKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASA 79
Query: 178 CCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAI 236
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 80 NCL--DRHLSEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIV 135
Query: 237 AIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 296
I MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR
Sbjct: 136 TIYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVVITSDEGMRGGRA 195
Query: 297 FPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + A + K IVL G + + +D+ W L + H +P
Sbjct: 196 IPLKRNIDDALNHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLLETASEHCQPEEMG 254
Query: 350 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGW 408
+ + +L++SG+TG PK + T + + ++ D K G+VY ++GW
Sbjct: 255 -----AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGW 309
Query: 409 VMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNT 462
+ G +++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 310 ITGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGK 369
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQ 520
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 370 QHFDQFDGSTLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILI 423
Query: 521 PQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNAD 573
GA T +A ++D G + G + L + G R + D
Sbjct: 424 TPLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGD 480
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
HE ++GM GD +R GY + GR DD +N+ G
Sbjct: 481 HERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSG 524
|
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A1RIK1|ACSA_SHESW Acetyl-coenzyme A synthetase OS=Shewanella sp. (strain W3-18-1) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 134/526 (25%), Positives = 220/526 (41%), Gaps = 50/526 (9%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAE 177
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 23 QYKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASA 79
Query: 178 CCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAI 236
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 80 NCL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIV 135
Query: 237 AIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 296
I MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR
Sbjct: 136 TIYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVVITSDEGMRGGRA 195
Query: 297 FPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + A + K IVL G + + +D+ W L + H +P
Sbjct: 196 IPLKRNIDDALNHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLLETASEHCQPEEMG 254
Query: 350 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGW 408
+ + +L++SG+TG PK + T + + ++ D K G+VY ++GW
Sbjct: 255 -----AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGW 309
Query: 409 VMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNT 462
+ G +++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 310 ITGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGK 369
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQ 520
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 370 QHFDQFDGSTLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILI 423
Query: 521 PQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNAD 573
GA T +A ++D G + G + L + G R + D
Sbjct: 424 TPLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGD 480
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
HE ++GM GD +R GY + GR DD +N+ G
Sbjct: 481 HERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSG 524
|
Shewanella sp. (strain W3-18-1) (taxid: 351745) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 660 | ||||||
| 225435726 | 727 | PREDICTED: acetyl-coenzyme A synthetase | 0.940 | 0.854 | 0.752 | 0.0 | |
| 380042388 | 727 | acyl-activating enzyme 14 [Cannabis sati | 0.936 | 0.850 | 0.755 | 0.0 | |
| 380042368 | 723 | acyl-activating enzyme 4, partial [Canna | 0.933 | 0.852 | 0.729 | 0.0 | |
| 380042386 | 715 | acyl-activating enzyme 13 [Cannabis sati | 0.919 | 0.848 | 0.722 | 0.0 | |
| 449503439 | 725 | PREDICTED: probable acyl-activating enzy | 0.939 | 0.855 | 0.692 | 0.0 | |
| 449448834 | 725 | PREDICTED: probable acyl-activating enzy | 0.939 | 0.855 | 0.692 | 0.0 | |
| 449503441 | 725 | PREDICTED: probable acyl-activating enzy | 0.939 | 0.855 | 0.686 | 0.0 | |
| 449448832 | 725 | PREDICTED: probable acyl-activating enzy | 0.939 | 0.855 | 0.684 | 0.0 | |
| 145336784 | 727 | acyl-activating enzyme 18 [Arabidopsis t | 0.937 | 0.851 | 0.695 | 0.0 | |
| 12323178 | 2655 | acetyl-CoA synthetase, putative; 45051-3 | 0.934 | 0.232 | 0.691 | 0.0 |
| >gi|225435726|ref|XP_002285701.1| PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera] gi|297746451|emb|CBI16507.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/621 (75%), Positives = 541/621 (87%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF++ILK + ++G D E+WRE+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFERILKAAVGGARGSDPSEVWREVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLH+LV++SVY +WD SI+GPPLYWFPSL +S TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHRLVFHSVYAEWDESIRGPPLYWFPSLYESMHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
+ LFQKF+V++ E YW + LKE+SV+F AP+CILD TDKSKHGGTWLPG+VLNIAECCL
Sbjct: 121 YSLFQKFSVQNLEVYWSMVLKELSVLFHRAPRCILDTTDKSKHGGTWLPGAVLNIAECCL 180
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LP ++ RK DN++A+VWR++ D+S VN +T KELREQVM+VAN LD FSKGDAIAIDM
Sbjct: 181 LPVSYPRKHDNSLAVVWRDEGNDDSPVNRLTLKELREQVMMVANVLDATFSKGDAIAIDM 240
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EIATRL VSKAKGIFTQDFI+RGGRKFPLY
Sbjct: 241 PMTVHAVIIYLAIVLAGFVVVSIADSFAAKEIATRLHVSKAKGIFTQDFIVRGGRKFPLY 300
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K IVLPAIG DV + LREQDLSWKDFLS D+ PRPN YSPVY P+DAV N
Sbjct: 301 SRVVEAAPHKVIVLPAIGTDVDVQLREQDLSWKDFLSHADHLPRPNNYSPVYQPIDAVTN 360
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR +A+ WA I+++VGDV+CWPTNLGWVMGP IL++SFL
Sbjct: 361 ILFSSGTTGDPKAIPWTQVSPIRSSADAWAQINIQVGDVFCWPTNLGWVMGPTILYASFL 420
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVTVLGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 421 TGAALALYHGSPLDRGFGKFVQDAGVTVLGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 480
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A+Y IIE CGGTEL+S+YIQGS+LQPQAFG FSTA MT G VILD
Sbjct: 481 ETSNVDDDLWLSSRAYYKPIIECCGGTELASSYIQGSVLQPQAFGTFSTAAMTTGFVILD 540
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E GVPYPDDQPCVGEVGLFPL +GA+D LLNADHEEVYF+GMPMYKGM LRRHGDIIKRT
Sbjct: 541 ENGVPYPDDQPCVGEVGLFPLIMGATDWLLNADHEEVYFKGMPMYKGMHLRRHGDIIKRT 600
Query: 601 VGGYIIVQGRADDTMNLGGIK 621
VGGY +VQGRADDTMNLGGIK
Sbjct: 601 VGGYFVVQGRADDTMNLGGIK 621
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042388|gb|AFD33358.1| acyl-activating enzyme 14 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/621 (75%), Positives = 534/621 (85%), Gaps = 3/621 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPWHPHG
Sbjct: 4 KSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPWHPHG 63
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 64 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 123
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLNIAECCLL
Sbjct: 124 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNIAECCLL 183
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 184 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 243
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 244 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 303
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 304 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVGTRSR--NYSPCYQPVDTLINI 361
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 362 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 421
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 422 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 481
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 482 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 541
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+GMP+YKGM LRRHGDIIKRTV
Sbjct: 542 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKGMPLYKGMRLRRHGDIIKRTV 601
Query: 602 GGYIIVQGRADDTMNLGGIKA 622
GGY IVQGRADDTMNLGGIK
Sbjct: 602 GGYFIVQGRADDTMNLGGIKT 622
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042368|gb|AFD33348.1| acyl-activating enzyme 4, partial [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/620 (72%), Positives = 518/620 (83%), Gaps = 4/620 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+ LKPWHPHG
Sbjct: 1 NSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRALKPWHPHG 60
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 61 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 120
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLN+AECCLL
Sbjct: 121 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNVAECCLL 180
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 181 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 240
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 241 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 300
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 301 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVGTRSR--NYSPCYQPVDTLINI 358
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 359 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 418
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 419 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 478
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 479 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 538
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+ Y C +RTV
Sbjct: 539 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKEC-HYTKECASETWRYYQRTV 597
Query: 602 GGYIIVQGRADDTMNLGGIK 621
GGY IVQGRADDTMNLGGIK
Sbjct: 598 GGYFIVQGRADDTMNLGGIK 617
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042386|gb|AFD33357.1| acyl-activating enzyme 13 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/620 (72%), Positives = 519/620 (83%), Gaps = 13/620 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGV+DL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPW
Sbjct: 4 KSISEVGVDDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPW---- 59
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
SVY WD S KGPP YWFPSL SK TNLG +E HGP LLG YKDPITS+
Sbjct: 60 -------SVYAHWDVSSKGPPPYWFPSLYHSKDTNLGRLMEKHGPSLLGPLYKDPITSYS 112
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
LFQKF+VEHPE YW IALKE+SV F+E PKCILD++DKSKHGG+WLPG+VLNIAECCLLP
Sbjct: 113 LFQKFSVEHPEVYWSIALKELSVSFQEEPKCILDKSDKSKHGGSWLPGAVLNIAECCLLP 172
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
+++ RK+D+++AIVWR++ D+S+VNL+T K+LREQV+ VA +LD MFSKGDAIA+DMPM
Sbjct: 173 TSYPRKDDDSLAIVWRDEGSDDSSVNLITLKQLREQVISVAKSLDAMFSKGDAIAMDMPM 232
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
T AVIIYLAIIL+G VVVSIADSFA +EIA+RL VS+AK IFTQDFILRGGRKFPLYS+
Sbjct: 233 TANAVIIYLAIILSGLVVVSIADSFAPKEIASRLHVSQAKAIFTQDFILRGGRKFPLYSR 292
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ AAP + IVLPA G+++GI LREQD+SW DFLSSV R YSP Y PVD+++NIL
Sbjct: 293 VVEAAPDRVIVLPATGSNIGIQLREQDMSWGDFLSSVGTRSRK--YSPCYQPVDSLINIL 350
Query: 363 FSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
FSSGTTGEPKAIPWT LS IRC+++ WA++D+KVGDV CWPTNLGW +GP ILF+ FL+G
Sbjct: 351 FSSGTTGEPKAIPWTHLSPIRCSSDFWAYMDIKVGDVVCWPTNLGWALGPFILFTCFLSG 410
Query: 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
A LALY GSPL R FGKFVQDA VT LGTVPSLVK W+NT C++GLDWTKI+SFASTGET
Sbjct: 411 AVLALYHGSPLGRGFGKFVQDASVTKLGTVPSLVKTWKNTQCMKGLDWTKIKSFASTGET 470
Query: 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
SNVDDDLWLSS+A+Y +IE CGGTEL+S+YIQGSLLQPQAFGAF+TATMT VI+DE
Sbjct: 471 SNVDDDLWLSSQAYYKPVIECCGGTELASSYIQGSLLQPQAFGAFNTATMTTSFVIIDEH 530
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PYPDDQ C GEVGL PLYLGASDRLLNADHEEVYF+GMP+YKGM LRRHGDII RTVG
Sbjct: 531 GNPYPDDQACTGEVGLIPLYLGASDRLLNADHEEVYFKGMPLYKGMRLRRHGDIINRTVG 590
Query: 603 GYIIVQGRADDTMNLGGIKA 622
GY IVQGRADDTMNLGGIK
Sbjct: 591 GYFIVQGRADDTMNLGGIKT 610
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503439|ref|XP_004162003.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/622 (69%), Positives = 516/622 (82%), Gaps = 2/622 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH L+YYSVY +W+ S GPP YWFPS++QSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHHLLYYSVYANWNISSNGPPPYWFPSINQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSN--VRWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQLS IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQLSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGHGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKA 622
VGGY +VQGRADDTMNLGGIK
Sbjct: 599 VGGYFVVQGRADDTMNLGGIKT 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448834|ref|XP_004142170.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/622 (69%), Positives = 517/622 (83%), Gaps = 2/622 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSNV--RWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGYGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKA 622
VGGY++VQGRADDTMNLGGIK
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKT 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503441|ref|XP_004162004.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/622 (68%), Positives = 521/622 (83%), Gaps = 2/622 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GLKL EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLKLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKA 622
VGGY++VQGRADDTMNLGGIK
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKT 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448832|ref|XP_004142169.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/622 (68%), Positives = 520/622 (83%), Gaps = 2/622 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKA 622
VGGY++VQGRADDTMNLGGIK
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKT 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145336784|ref|NP_175929.3| acyl-activating enzyme 18 [Arabidopsis thaliana] gi|75297963|sp|Q84P17.1|AEE18_ARATH RecName: Full=Probable acyl-activating enzyme 18, peroxisomal gi|29893268|gb|AAP03028.1| acyl-activating enzyme 18 [Arabidopsis thaliana] gi|332195104|gb|AEE33225.1| acyl-activating enzyme 18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/623 (69%), Positives = 513/623 (82%), Gaps = 4/623 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKA 622
TVGGY VQGRADDTMNLGGIK
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKT 620
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12323178|gb|AAG51574.1|AC027034_20 acetyl-CoA synthetase, putative; 45051-31547 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/623 (69%), Positives = 511/623 (82%), Gaps = 6/623 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKF DAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKF--DAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 475
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 476 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 535
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 536 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 595
Query: 600 TVGGYIIVQGRADDTMNLGGIKA 622
TVGGY VQGRADDTMNLGGIK
Sbjct: 596 TVGGYYNVQGRADDTMNLGGIKT 618
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 660 | ||||||
| TAIR|locus:2035721 | 727 | AAE18 "acyl-activating enzyme | 0.936 | 0.850 | 0.696 | 1e-242 | |
| TAIR|locus:2178277 | 721 | AAE17 "acyl-activating enzyme | 0.919 | 0.841 | 0.495 | 3.7e-158 | |
| TIGR_CMR|BA_2553 | 646 | BA_2553 "acetoacetyl-CoA synth | 0.762 | 0.778 | 0.275 | 2.2e-38 | |
| TIGR_CMR|CPS_3955 | 648 | CPS_3955 "acetyl-CoA synthetas | 0.743 | 0.757 | 0.259 | 3.3e-30 | |
| DICTYBASE|DDB_G0277815 | 674 | acsA "acetyl-CoA synthetase" [ | 0.75 | 0.734 | 0.259 | 8.4e-30 | |
| TIGR_CMR|SO_2743 | 650 | SO_2743 "acetyl-coenzyme A syn | 0.715 | 0.726 | 0.260 | 5.8e-29 | |
| UNIPROTKB|P27550 | 652 | acs [Escherichia coli K-12 (ta | 0.660 | 0.668 | 0.272 | 1e-27 | |
| TIGR_CMR|SPO_1813 | 654 | SPO_1813 "acetyl-coenzyme A sy | 0.731 | 0.738 | 0.261 | 1e-27 | |
| MGI|MGI:1915988 | 682 | Acss1 "acyl-CoA synthetase sho | 0.709 | 0.686 | 0.259 | 2e-27 | |
| RGD|1306246 | 682 | Acss1 "acyl-CoA synthetase sho | 0.709 | 0.686 | 0.261 | 4.2e-27 |
| TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2339 (828.4 bits), Expect = 1.0e-242, P = 1.0e-242
Identities = 433/622 (69%), Positives = 513/622 (82%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIK 621
TVGGY VQGRADDTMNLGGIK
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIK 619
|
|
| TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 309/623 (49%), Positives = 412/623 (66%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGA-APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358
Y +V+ A APL AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPL-AIVVPARGSSCRMKLREKDLSWNNFLGNAR-NLRGVEYVAAEKPAGAY 351
Query: 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 352 TNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYAS 411
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F S
Sbjct: 412 LINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGS 471
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI 538
TGE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L I
Sbjct: 472 TGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFI 531
Query: 539 LDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK 598
LDE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +
Sbjct: 532 LDEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFE 591
Query: 599 RTVGGYIIVQGRADDTMNLGGIK 621
RT GY GRADDTMNLGGIK
Sbjct: 592 RTSKGYYRAHGRADDTMNLGGIK 614
|
|
| TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 2.2e-38, P = 2.2e-38
Identities = 151/549 (27%), Positives = 249/549 (45%)
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISV 145
WFP+ + + T L + K LG Y+D + F ++E +W A K +
Sbjct: 6 WFPTEEYKEKTRLYGWM-----KSLG--YED----YETFYNKSIEETAWFWGEAEKVVGY 54
Query: 146 VFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDES 205
+ + +LD + + W G N+ E L + +D T + +
Sbjct: 55 QWMKPYTEVLDLQNGTPFA-QWYNGGTCNVVESVL---SRWLADDETRTQPALQYEGENG 110
Query: 206 AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
TY+EL V AN L KGD + I MPM V+ LA++ G ++ I
Sbjct: 111 TSKSFTYEELDSWVSRAANGLKHAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIF 170
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL--KAIVLPAIGN 319
FA+ + TR++ + +K I T D R G+ L +V A P K +++ GN
Sbjct: 171 SGFASDAVMTRVQAAGSKMIITADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGN 230
Query: 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL 379
D P D SW S+++ +P ++ + D ++ ++++SGTTG+PK T
Sbjct: 231 DF-TP-HNYDFSW----STLEKE-KPFVHAEEMHSDDPLM-LIYTSGTTGKPKGTVHTHA 282
Query: 380 S-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP----LE 434
++ + +++K GD W T++GW+MGP +LF S +NGAT+ +Y+G P +
Sbjct: 283 GFPLKAAFDAGFGMNIKQGDRVLWVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKAD 342
Query: 435 RSFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492
R + + V +T LG P+L++A + + + FASTGE N D +WL
Sbjct: 343 RLW-ETVDKYEITHLGISPTLIRALMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLF 401
Query: 493 SKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550
+ I GGTE+S L++P A +F+ + V+LD+ G P D+
Sbjct: 402 ETVGKSNVPICNYSGGTEISGGIFGNVLIKPIAPISFNASLPGMAAVVLDDQGNPIRDE- 460
Query: 551 PCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
VGE+ L ++G + D E ++ + HGD + YII GR
Sbjct: 461 --VGELCLEKPWVGMTKSFWE-DDERYVNTYWSRFENKWV--HGDWVVYDGEQYIIT-GR 514
Query: 611 ADDTMNLGG 619
+DDT+N+ G
Sbjct: 515 SDDTLNIAG 523
|
|
| TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 3.3e-30, P = 3.3e-30
Identities = 138/531 (25%), Positives = 221/531 (41%)
Query: 108 KLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTW 167
K + D T +++K ++E P+ +W KE ++ P + + D W
Sbjct: 13 KAKAHTHIDAATYDAMYKK-SIEQPDEFWGEQAKEFIDWYK--PWDSVSKVDLKNSEINW 69
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWR-EDRCDESAVNLMTYKELREQVMLVANAL 226
G LN++ C+ H + N AI++ +D D+S V TY+EL + V AN L
Sbjct: 70 FSGGKLNVSYNCI--DRHLATKANDTAIIFEGDDPNDDSKV---TYQELHDHVCRFANLL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD + I MPM LA G + + F+ I R+ + K +
Sbjct: 125 KERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDADCKVVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
T D LRGG++ PL S V A I P + + + + D++W D + ++Y
Sbjct: 185 TADQSLRGGKRIPLKSNVDAAV----IDCPNVHSVIVVARTGGDVAWNDKVD-INYEEAV 239
Query: 346 NYYSPVYNP--VDAV--VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
S + P +DA + +L++SG+TG PK + T I A ++ D K G+VY
Sbjct: 240 AKQSAICEPEVMDAEDPLFVLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVFDYKEGEVY 299
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPSLV 456
+ GW+ G I + NGAT +++G P G+F Q V V T P+ +
Sbjct: 300 WCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNVFYTAPTAI 359
Query: 457 KAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSA 512
+A + + + D + +R + GE N + W WY ++ +C +
Sbjct: 360 RALMSIGDDLVNQADLSSLRLLGTVGEPIN--PEAW----HWYYEVVGKSNCPIVDTWWQ 413
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-GE-VGLFPLYLGASDRL- 569
G +L GA AG + D + GE GL + +L
Sbjct: 414 TETGGILITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEGENAGLLVMTASWPGQLR 473
Query: 570 -LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ DH Y + Y G GD KR GY + GR DD +N+ G
Sbjct: 474 TVYGDHNRFYQTYLGQYPGNYFT--GDGAKRDEDGYYWITGRVDDVLNVSG 522
|
|
| DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.4e-30, P = 8.4e-30
Identities = 140/540 (25%), Positives = 235/540 (43%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P + + + + K ++E P +W+ KE F + + K +
Sbjct: 21 PSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKEFLTWFSDYTT--VQHGSFEKGDIS 78
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W +N++ C+ H ++ + VAI++ D +E+ V +TY+E+ E+V ++N L
Sbjct: 79 WFLNGKINVSYNCI--DRHLKENADKVAILFEGD--EETMVKKVTYREMFEEVCRLSNLL 134
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
++ KGD +AI +P T A+ LA G + I F I +R+ +K + I
Sbjct: 135 ISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVII 194
Query: 286 TQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLS---WKDFLSSVDY 341
T D LRGGR PL K+ K + + + G P + S W D + +D+
Sbjct: 195 TADEGLRGGRYIPLKEKIDQVVQHCKLVQHVLVFKNTGRPTITFNPSIDIWADE-AMLDH 253
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
P Y PV+ + + IL++SG+TG PK + TQ + A ++ D DVY
Sbjct: 254 RP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVY 310
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLV 456
++GW+ G I++ NGAT +++G+PL + + + VQ +T T P+ +
Sbjct: 311 ACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAI 370
Query: 457 KAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSA 512
++ + + D + +R S GE N + W ++ AI+++ TE
Sbjct: 371 RSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG-- 428
Query: 513 YIQGSLLQPQAFGAFSTATMTA-----G--LVILD-ECGVP-Y--PDDQPCVGEVGLFPL 561
G L+ P G ST +A G L +LD + G Y PD C G+ +
Sbjct: 429 ---GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAI 484
Query: 562 YLG--ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
R + H M YKG GD +K GY ++GR DD +N+ G
Sbjct: 485 SKPWPGIARSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVINVSG 542
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| TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 5.8e-29, P = 5.8e-29
Identities = 136/523 (26%), Positives = 222/523 (42%)
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECCL 180
++Q+ ++ +PE +W K I + P + +T H + W LN + CL
Sbjct: 27 MYQE-SIVNPEGFWREHGKRIDWI---KPYTKIKKTTFDDHNLSINWFYDGTLNASANCL 82
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
H + VAI+W D +E +TY EL QV ANAL + +GD + I
Sbjct: 83 --DRHLAAHSDRVAIIWEGDNANEQ--RKITYGELHTQVCKFANALRSQGVRRGDIVTIY 138
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR PL
Sbjct: 139 MPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGMRGGRAIPL 198
Query: 300 YSKVLGAA--P-----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352
+ A P K IVL G + + +D+ W + + H
Sbjct: 199 KRNIDDALKHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLVETASEHCAVEEMG-AE 256
Query: 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG 411
+P+ +L++SG+TG PK + T + + ++ D K G++Y ++GW+ G
Sbjct: 257 DPLF----LLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCTADVGWITG 312
Query: 412 -PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTNCL 465
+++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 313 HSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQHF 372
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQA 523
+ + + +R S GE N + W WY+ +I E C + G +L
Sbjct: 373 DKYNGSSLRIMGSVGEPIN--PEAW----RWYHEVIGHEHCPIVDTWWQTETGGILITPL 426
Query: 524 FGAFSTATMTA-----GL--VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 576
GA T +A G+ ++D G + G + L + G R + DHE
Sbjct: 427 PGATDTKPGSATRPFFGVQPALVDNMGNIL--EGATEGNLVLLDSWPGQM-RTVYGDHER 483
Query: 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
++GM GD +R GY + GR DD +N+ G
Sbjct: 484 FVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSG 524
|
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| UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 129/473 (27%), Positives = 197/473 (41%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++YKEL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DASQSKHISYKELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAA--PL-----KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A P +VL G + +DL W D +
Sbjct: 185 TSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQ-EGRDLWWHDLVEQ 243
Query: 339 V-DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKV 396
D H N D + IL++SG+TG+PK + T + A + ++ D
Sbjct: 244 ASDQHQAEEM-----NAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHP 297
Query: 397 GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTV 452
GD+Y ++GWV G +L+ GAT +++G P + V V +L T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTA 357
Query: 453 PSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--IIESCGGTE 508
P+ ++A +EG D + +R S GE N + W K ++++ TE
Sbjct: 358 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTE 417
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEVGLFPLYLGAS 566
+ ++ L A S G+ ++D G P + G + + + G +
Sbjct: 418 -TGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPL--EGATEGSLVITDSWPGQA 474
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 475 -RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
|
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| TIGR_CMR|SPO_1813 SPO_1813 "acetyl-coenzyme A synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 141/539 (26%), Positives = 230/539 (42%)
Query: 110 LGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHGGTW 167
+ RA+ + T R++ ++ PE +W K + + F + + + S + W
Sbjct: 19 VARAHVNADTYDRMYAA-SMADPEGFWAEQGKRVDWIKPFTQVKDVNYNFGEVSIN---W 74
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LN+A C+ H + AI+W D E+A ++ TYKEL V +AN L+
Sbjct: 75 YADGTLNVAANCI--DRHLATRGDQTAIIWEPDSPTEAAKHI-TYKELHGSVCRMANILE 131
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
++ KGD + I +PM A LA G + + F+ +A R+ AK + T
Sbjct: 132 SLGVRKGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARVNGCDAKVVIT 191
Query: 287 QDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
D RGGRK PL S A +K +V+ G + ++D + +
Sbjct: 192 ADEAPRGGRKTPLKSNADAALLHCKDTVKCLVVKRTGGQTTW-IADRDFDYNEMALEAS- 249
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGD 398
+Y +P + + IL++SG+TG+PK + T + A H D GD
Sbjct: 250 ----DYCAPAEMGAEDPLFILYTSGSTGQPKGVVHTTGGYLVYAA--MTHEITFDYHDGD 303
Query: 399 VYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPS 454
+Y ++GWV G I++ NGAT +++G P G+F + V T P+
Sbjct: 304 IYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWEVCAKHKVNQFYTAPT 363
Query: 455 LVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
++A + T+ +E D + +R + GE N + W WYN ++ G +
Sbjct: 364 AIRALMGQGTSFVEKHDLSDLRLLGTVGEPIN--PEAW----NWYNEVVGK-GKCPIVDT 416
Query: 513 YIQ----GSLLQPQAFGAFST---ATMTA--GLV--ILD-ECGVPYPDDQPCVGEVGLFP 560
+ Q G L+ P GA +T A M G+V +LD + GV + G + +
Sbjct: 417 WWQTETGGHLMTPLP-GAHATKPGAAMKPFFGVVPVVLDPQSGVEISGNG-VEGVLCIKD 474
Query: 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ G R + DHE YKG GD +R G + GR DD +N+ G
Sbjct: 475 SWPGQM-RTVWGDHERFQKTYFADYKGYYFT--GDGCRRDAEGDYWITGRVDDVINVSG 530
|
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| MGI|MGI:1915988 Acss1 "acyl-CoA synthetase short-chain family member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 133/513 (25%), Positives = 226/513 (44%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ P A+W ++ ++V+ + D ++ G W G LN++ CL H +K
Sbjct: 60 QEPAAFWGPLARD-TLVWDTPYHTVWDCDFRTGKIG-WFLGGQLNVSVNCL--DQHVQKS 115
Query: 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248
T+A++W D + V + TY+EL E +AN L +GD +AI MP++ AV
Sbjct: 116 PETIALIWERDE-PGTEVRI-TYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVA 173
Query: 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA- 307
LA G + + F+A +A R+ +K K + T + LRGGR L K++ A
Sbjct: 174 AMLACARIGAIHTVVFAGFSAESLAGRINDAKCKAVITFNQGLRGGRVVEL-KKIVDEAV 232
Query: 308 ---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P VL A D +P+ D+ + ++ P +P + ++ +L++
Sbjct: 233 KSCPTVQHVLVAHRTDTKVPMGSLDIPLEQEMAK----EAP-VCTPESMSSEDMLFMLYT 287
Query: 365 SGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNG 422
SG+TG PK + TQ + A + D + GDV+ ++GW+ G +++ NG
Sbjct: 288 SGSTGTPKGLVHTQAGYLLYAAMTHKLVFDYQPGDVFGCVADIGWITGHSYVVYGPLCNG 347
Query: 423 ATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFA 477
AT L++ +P+ G++ VQ + P+ V+ ++ D + +R+
Sbjct: 348 ATTVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLG 407
Query: 478 STGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA- 534
S GE N + WL ++++ TE I +P GA M
Sbjct: 408 SVGEPINHEAWEWLHKVVGDGRCTLVDTWWQTETGGICIAP---RPSEDGAEILPGMAMR 464
Query: 535 ---GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYK 586
G+V ++DE G + G + + + G + R + DH+ + YFR P Y
Sbjct: 465 PFFGIVPVLMDEKGNVL-EGGDVSGALCISQAWPGMA-RTIYGDHQRFVDAYFRAYPGYY 522
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
GD RT GGY + GR DD +N+ G
Sbjct: 523 FT-----GDGAHRTEGGYYQITGRMDDVINISG 550
|
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| RGD|1306246 Acss1 "acyl-CoA synthetase short-chain family member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 4.2e-27, P = 4.2e-27
Identities = 134/513 (26%), Positives = 225/513 (43%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ P A+W ++ ++V+ + D ++ G W G LN++ CL H +K
Sbjct: 60 QEPAAFWGPLARD-TLVWDTPYHTVWDCDFRTGKIG-WFLGGQLNVSVNCL--DQHVQKS 115
Query: 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248
+T+A++W D + V + TY+EL E +AN L +GD +AI MP++ AV
Sbjct: 116 PDTIALIWERDE-PGTEVRI-TYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVA 173
Query: 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA- 307
LA G + + F+A +A R+ +K K + T + LRGGR L K++ A
Sbjct: 174 AMLACARIGAIHTVVFAGFSAESLAGRINDAKCKVVITFNQGLRGGRVVEL-KKIVDEAV 232
Query: 308 ---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P VL A D +P+ D+ + +++ P N D + +L++
Sbjct: 233 KNCPTVQHVLVAHRTDTKVPMGNLDIPLEQEMAN----EAPVCTPESMNSEDMLF-MLYT 287
Query: 365 SGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNG 422
SG+TG PK + TQ + A + D GDV+ ++GW+ G +++ NG
Sbjct: 288 SGSTGTPKGLVHTQAGYLLYAAMTHKLVFDYHPGDVFGCVADIGWITGHSYVVYGPLCNG 347
Query: 423 ATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFA 477
AT L++ +P+ G++ VQ + P+ V+ ++ D + +R+
Sbjct: 348 ATTVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAVRLLLKFGDAWVKKYDRSSLRTLG 407
Query: 478 STGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA- 534
S GE N + WL ++++ TE I +P GA M
Sbjct: 408 SVGEPINHEAWEWLHKVVGDGRCTLVDTWWQTETGGICIAP---RPSEDGAEILPGMAMR 464
Query: 535 ---GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYK 586
G+V ++DE G + G + + + G + R + DH+ + YFR P Y
Sbjct: 465 PFFGIVPALMDEKG-NVVEGGDVSGALCISQAWPGMA-RTIYGDHQRFVDAYFRTYPGYY 522
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
GD RT GGY + GR DD +N+ G
Sbjct: 523 FT-----GDGAHRTEGGYYQITGRMDDVINISG 550
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84P17 | AEE18_ARATH | 6, ., 2, ., 1, ., - | 0.6950 | 0.9378 | 0.8514 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024773001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (727 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 660 | |||
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.0 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.0 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-56 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-55 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 9e-50 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 6e-47 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-44 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-37 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 1e-36 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-32 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-32 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-28 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 2e-26 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-26 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 3e-24 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 3e-22 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 3e-20 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 4e-18 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 5e-17 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-16 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-15 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-15 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-14 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 7e-14 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 2e-13 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-13 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-13 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 3e-12 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-11 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-10 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-09 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-08 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 3e-08 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 3e-08 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 5e-08 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 8e-08 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 8e-08 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 9e-08 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-07 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-07 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 3e-07 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 6e-07 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 6e-07 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 6e-07 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 7e-07 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 8e-07 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-06 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-06 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-06 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 4e-06 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 4e-06 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 8e-06 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-05 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-05 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 2e-05 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-05 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 4e-05 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 5e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 8e-05 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 8e-05 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 9e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 9e-05 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-04 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 5e-04 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 6e-04 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 6e-04 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 6e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-04 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 7e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 7e-04 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 8e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 8e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 0.001 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 0.001 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.001 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 0.001 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 0.002 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.002 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 0.002 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 0.002 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 0.003 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 0.003 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.003 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.004 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 0.004 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 1077 bits (2787), Expect = 0.0
Identities = 381/623 (61%), Positives = 460/623 (73%), Gaps = 5/623 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
GK++ E+ V DL GL EEAE+F K L+ +++ + G IWR +++ +L P HP
Sbjct: 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRA-GASPPSIWRR-ISQSLLTPSHP 61
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
LHQL+YYS Y +WD+ GPP WFPS + +KLTNLG LE G +LLG YKDPI+S
Sbjct: 62 FALHQLMYYSCYKNWDSDTLGPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISS 121
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F FQ+F+VE+PE YW I L E+S+VF P+CILD +D+S GG WLPG+VLN+AECCL
Sbjct: 122 FSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCL 181
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
P + D+++AI+WR++ D+ VN MT ELR QV VANALD + F KGDAIAID
Sbjct: 182 TPKPSKT--DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V AVIIYLAIILAG VVVSIADSFA EIATRL++SKAK IFTQD I+RGG+ PL
Sbjct: 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPL 299
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
YS+V+ A KAIVLPA G V + LRE D+SW DFL+ + RP+ Y V PV+A
Sbjct: 300 YSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFT 359
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQL+ +R A+ WAH+D++ GD+ CWPTNLGW+MGP ++++S
Sbjct: 360 NILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASL 419
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
LNGATLALY GSPL R F KFVQDA VT+LGTVPS+VK W+NTNC+ GLDW+ IR F ST
Sbjct: 420 LNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE S+VDD LWL S+A Y IIE CGGTEL ++ GSLLQPQAF AFST M L IL
Sbjct: 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFIL 539
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
D+ G PYPDD PC GE+ LFPL GAS LLNADH +VYF+GMP++ G LRRHGDI +R
Sbjct: 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFER 599
Query: 600 TVGGYIIVQGRADDTMNLGGIKA 622
T GGY GRADDTMNLGGIK
Sbjct: 600 TSGGYYRAHGRADDTMNLGGIKV 622
|
Length = 728 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 674 bits (1740), Expect = 0.0
Identities = 277/389 (71%), Positives = 321/389 (82%), Gaps = 7/389 (1%)
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPMTV AVIIYLAI+LAG VVVS+ADSF+A+EIATRL +S AKG+FTQD +LRGGR PL
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL--SSVDYHPRPNYYSPVYNPVDA 357
YSKV+ AAP KAIVLPA G V +PLREQDLSW DFL ++ N YSPVY PV++
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V NILFSSGTTGEPKAIPWT LS +RC ++GWAH+D++ GDV CWPTNLGW+MGP +L+S
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475
+FLNGATLALY G+PL R FGKFVQDAGVTVLG VPS+VKAWR+T +EGLDW+K+R
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
FASTGE S VDD LWLSS + +Y +IE CGGTEL+S YI +LLQPQA GAFSTA++
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300
Query: 535 GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRR 592
V+L++ GVPYPDDQPCVGEV L P LGASDRLLNADH++VY++GMPMY KGM LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360
Query: 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
HGDI+KRT GGY VQGRADDTMNLGGIK
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIK 389
|
Length = 499 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 5e-56
Identities = 118/433 (27%), Positives = 183/433 (42%), Gaps = 84/433 (19%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261
++ +V TY EL +V +A+ L + KGD + I MPM AV+ LAI G + V
Sbjct: 1 EDGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAV 60
Query: 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321
I F +ATRL+ ++AK + T D LR G++
Sbjct: 61 PIFSGFGPDAVATRLQDAEAKVLITADGFLRRGKR------------------------- 95
Query: 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 381
+ L++ I+++SGTTG+PK T
Sbjct: 96 -VDLKDDPAM-----------------------------IIYTSGTTGKPKGTVHTHAGF 125
Query: 382 -IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSF 437
++ + DLK GD W T++GW+MGP ++ L GAT+ LY+G+ P
Sbjct: 126 PVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRL 185
Query: 438 GKFVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK- 494
+ V+ VT LG P+L++A R +EG D + +R STGE + + LWL +
Sbjct: 186 WRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERV 245
Query: 495 -AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553
II GGTE+S + ++P +F+ + ++DE G P V
Sbjct: 246 GGGRAPIINYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVR---GEV 302
Query: 554 GE-------VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
GE G+ + +R + E Y+ P G+ HGD GY
Sbjct: 303 GELVVRAPWPGMTRGFWRDPER-----YLETYWSRFP---GVW--VHGDWALVDEDGYWY 352
Query: 607 VQGRADDTMNLGG 619
+ GR+DDT+ + G
Sbjct: 353 ILGRSDDTIKVAG 365
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 1e-55
Identities = 119/478 (24%), Positives = 185/478 (38%), Gaps = 74/478 (15%)
Query: 166 TWLPGSVLNIAECCLLPSNHRRKE---DNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
W G LN+A L R E + AI++ + +TY +LR +V +
Sbjct: 1 KWFEGGTLNLALNAL----DRHLEADRPDDTAIIFDGEDGLFRE---LTYGDLRREVARL 53
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
ANAL D KGD +AI MP + AVI LA G + ++ +A +A R+
Sbjct: 54 ANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGP 113
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
K + D R G++ L +V L + + +
Sbjct: 114 KVLIADDGTFRNGKEIALLEDADAVLSSVVVV------------PRLGLWYDEAVEKASE 161
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 398
+ P D + +L++SGTTG+PK I + L R TA+ H DL GD
Sbjct: 162 K-----FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK--FHGDLLPGD 214
Query: 399 VYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGVTVLGTVPSL 455
+ ++ GW+ G +FS +GAT LY G P + ++ VT+ GT P+
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274
Query: 456 VKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSS 511
++ E D + +R S GE N + W +Y+A I++ G TE
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-----FYSALGVWILDIYGQTETGM 329
Query: 512 AYIQG--SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-------GLFPLY 562
+I G + + + +D+ G P P P VGE+ G+ Y
Sbjct: 330 GFIAGRPPVKNGSSGLPLPGYAV----RRVDDEGNPVP---PGVGELVVRLPWPGMALTY 382
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 620
+R A Y GD +R GY + GR+DD + + G
Sbjct: 383 WNDPERYKEAYFGRWYR-------------TGDWAERDEDGYFWLHGRSDDVIKVSGK 427
|
Length = 528 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 9e-50
Identities = 142/538 (26%), Positives = 220/538 (40%), Gaps = 73/538 (13%)
Query: 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIA 176
+ + +++VE A+WE V+ + +LD G W PG+ LN A
Sbjct: 4 SLADYHALWRWSVEDLAAFWESVWDFFDVIGSKGYVVVLDGDIMP--GARWFPGARLNYA 61
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
E L R +++ AI + + +++ ELR QV +A AL + GD
Sbjct: 62 ENLL-----RHADNDPAAIYAAGE---DGERREISWAELRSQVARLAAALRDLGVKPGDR 113
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+A +P AVI LA G + S + F + R + K +F D + G+
Sbjct: 114 VAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGK 173
Query: 296 KFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ K+ L+A+V+ + P + + S P + +
Sbjct: 174 EHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERL 233
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407
P D + IL+SSGTTG PK I L ++ E H DL+ GD + T G
Sbjct: 234 --PFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLK---EHGLHCDLRPGDRLFYYTTTG 288
Query: 408 WVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
W+M L S L+GATL LY GSPL + G+T+ GT + A
Sbjct: 289 WMMWN-WLVSGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGI 347
Query: 465 --LEGLDWTKIRSFASTG-----ET-----SNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
D + +R+ STG E S+V D+WL+S + GGT++
Sbjct: 348 EPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVKSDVWLASIS---------GGTDICGC 398
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---------PLY- 562
++ G+ P G + + DE + +P +GEVG PLY
Sbjct: 399 FVGGNPTLPVYRGEIQCRGLGMAVEAFDE------EGKPVIGEVGELVCTKPFPSMPLYF 452
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 620
D + + + YF + G+ RHGD IK T G +I+ GR+D T+N GG+
Sbjct: 453 WNDPD---GSRYRDAYFD---TFPGVW--RHGDWIKITPHGGVIIYGRSDATLNPGGV 502
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 6e-47
Identities = 163/589 (27%), Positives = 236/589 (40%), Gaps = 110/589 (18%)
Query: 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIAL 140
G PL W PS ++ + + + L + +++VE EA+W+
Sbjct: 2 GDPL-WTPSAERIAASRMTAFIR-----WLAARRGLSFDDYAALWRWSVEDLEAFWQSVW 55
Query: 141 KEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIV-WRE 199
V+ +L + G W PG+ LN AE L R + D+ AI+ E
Sbjct: 56 DFFGVIGSTPYTVVLA--GRRMPGARWFPGARLNYAENLL-----RHRRDDRPAIIFRGE 108
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D +++ ELR QV +A AL + GD +A +P V+ LA G
Sbjct: 109 DGPRRE----LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP--LKAIV 313
+ S + F + + R + K + D GG+ F +KV A P +V
Sbjct: 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVV 224
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+P +G L W+DFL+ + PV P D + IL+SSGTTG PK
Sbjct: 225 VPYLGPAAAAAALPGALLWEDFLA--PAEAAELEFEPV--PFDHPLWILYSSGTTGLPKC 280
Query: 374 IP-------WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
I L + H DL GD + W T GW+M L S L GATL
Sbjct: 281 IVHGHGGILLEHLKELGL------HCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLV 333
Query: 427 LYQGSP----LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------EGLDWTKIRS 475
LY GSP + + GVTV GT + A C E D + +R+
Sbjct: 334 LYDGSPFYPDPNVLW-DLAAEEGVTVFGTSAKYLDA-----CEKAGLVPGETHDLSALRT 387
Query: 476 FASTGE----------TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG 525
STG +V D+WL+S I GGT++ S ++ G+ L P G
Sbjct: 388 IGSTGSPLPPEGFDWVYEHVKADVWLAS------I---SGGTDICSCFVGGNPLLPVYRG 438
Query: 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVG-L--------FPLYL-----GASDRLLN 571
+ + DE G +P VGEVG L PL G+ R +
Sbjct: 439 EIQCRGLGMAVEAWDEDG------RPVVGEVGELVCTKPFPSMPLGFWNDPDGS--RYRD 490
Query: 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 620
A YF + G + RHGD I+ T G +++ GR+D T+N GG+
Sbjct: 491 A-----YFD---TFPG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGV 529
|
Length = 655 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-44
Identities = 99/423 (23%), Positives = 157/423 (37%), Gaps = 48/423 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY+EL E+ +A AL + GD +AI +P + V+ LA++ AG V + S A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
+A L S+AK + T D L K+L ++L I +
Sbjct: 61 ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
+S + P D + I+++SGTTG+PK + T + + A
Sbjct: 112 DDELLAGASAEPPAPPV-------DPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLA 164
Query: 390 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTV 448
L GD L + +F L G TL L L+ ++ VTV
Sbjct: 165 ERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224
Query: 449 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508
L VP+L++ + D + +R S GE + L + ++ G TE
Sbjct: 225 LYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCVGEV----- 556
+ G + G + +LDE G P P VGE+
Sbjct: 285 TTVVATA------NLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPG--EVGELCIRGP 336
Query: 557 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 616
G+ YL + E + G + R GD+ + GY+ + GR DD +
Sbjct: 337 GVARGYLNDPEL-----TAERFVED-----GWGMYRTGDLGRWDEDGYLEILGRKDDQVK 386
Query: 617 LGG 619
+ G
Sbjct: 387 IRG 389
|
Length = 412 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-37
Identities = 141/521 (27%), Positives = 215/521 (41%), Gaps = 52/521 (9%)
Query: 124 FQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPS 183
+++V+ + +W+ + V F ++D D++ G W PG+ LN AE
Sbjct: 40 LHRWSVDELDTFWKAVWEWFDVRFSTPCARVVD--DRTMPGAQWFPGARLNYAE------ 91
Query: 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242
N R A+++ D E A +T+ ELR QV +A AL + GD ++ +P
Sbjct: 92 NLLRAAGTEPALLYV-DETHEPAP--VTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+AV+ LA G + S + F AR + R + + K +FT D G++ K
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 303 VL----GAAPLKAIVL-PAIGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYN--P 354
V L+A+V P +G P + L +DF ++ V+ P
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE------LVFEQLP 262
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ILFSSGTTG PK I + + ++ E H DL GD + T GW+M
Sbjct: 263 FDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN- 321
Query: 414 ILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGL 468
L S GATL LY GSP + G T+ GT V A R
Sbjct: 322 WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTH 381
Query: 469 DWTKIRSFASTGETSNVDDDLWL----SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D + ++ ASTG D W+ + W +I GGT++ S + + P
Sbjct: 382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASI---SGGTDICSCFAGANPTLPVHI 438
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN----ADHEEVYFR 580
G + + D G P + VGE+ R N + + + YF
Sbjct: 439 GEIQAPGLGTAVQSWDPEGKPVTGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD 495
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
P + RHGD I T G I++ GR+D T+N G++
Sbjct: 496 TYPG-----VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVR 531
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 1e-36
Identities = 148/553 (26%), Positives = 239/553 (43%), Gaps = 102/553 (18%)
Query: 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK-CILDRTDKSKHGGTWLPGSVLNIA 176
+ ++ + ++E P+ +W +E+ F+ K K W G LN++
Sbjct: 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYK----WFVGGELNVS 59
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
C+ H + VAI+W D + V +TY+EL +V AN L ++ KGD
Sbjct: 60 YNCV--DRHLEARPDKVAIIWEGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+AI MPM A I LA G + + F+A +A R+ + AK + T D LRGG+
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 296 KFPLYSKV---LGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + V L P+ +V+ GN V + +D+ W D ++ Y
Sbjct: 176 VIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-PWVEGRDVWWHDLMAKA-----SAYCE 229
Query: 350 PVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DLKVGD 398
P P+D+ + IL++SG+TG+PK + + T G +A + D+K GD
Sbjct: 230 P--EPMDSEDPLFILYTSGSTGKPKGV-------LHTTG-GYLLYAAMTMKYVFDIKDGD 279
Query: 399 VYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVP 453
++ W T ++GW+ G I++ NGAT +++G+P G+F ++ VT+ T P
Sbjct: 280 IF-WCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAP 338
Query: 454 SLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507
+ ++A G +W K +R S GE N + W+ WY ++ G
Sbjct: 339 TAIRALMR----LGDEWVKKHDLSSLRLLGSVGEPIN--PEAWM----WYYKVV---GKE 385
Query: 508 E--LSSAYIQ---GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGE 555
+ + Q G ++ GA T +A L ++DE G + GE
Sbjct: 386 RCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEG----NPVEGPGE 441
Query: 556 VGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
G YL R + DHE + YF + G GD +R GYI
Sbjct: 442 GG----YLVIKQPWPGMLRTIYGDHERFVDTYF---SPFPGYYFT--GDGARRDKDGYIW 492
Query: 607 VQGRADDTMNLGG 619
+ GR DD +N+ G
Sbjct: 493 ITGRVDDVINVSG 505
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 99/434 (22%), Positives = 153/434 (35%), Gaps = 65/434 (14%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL + +A AL + GD +AI +P + +I +LA + AG V V +
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+A L + AK + T L V A P+ +VL D +P+ +
Sbjct: 99 PRELAYILNDAGAKVLITSA------EFAALLEAVAEALPVVLVVLLVGDADDRLPITLE 152
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-- 386
L P P+ + +P D +L++SGTTG PK + T + + A
Sbjct: 153 AL--------AAEGPGPDADARPVDPDDLAF-LLYTSGTTGLPKGVVLTHRNLLANAAGI 203
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLE-RSFGKFVQDA 444
L DV L + G V L + L G TL L P + ++
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263
Query: 445 GVTVLGTVPSLVKAWRNT-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503
VTVL VP+ ++ + + + +R S G + + AI+E
Sbjct: 264 KVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG 323
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP----------DDQPCV 553
G TE S + L G P P +
Sbjct: 324 YGLTETS--------------PVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP 369
Query: 554 GEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
GEVG + Y + A E+ + R GD+ GY+
Sbjct: 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT------------GDLGYVDEDGYL 417
Query: 606 IVQGRADDTMNLGG 619
+ GR D + GG
Sbjct: 418 YIVGRLKDLIISGG 431
|
Length = 534 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-32
Identities = 157/557 (28%), Positives = 233/557 (41%), Gaps = 128/557 (22%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL---LP 182
K ++E PE +W +E+ F+ K +LD + W G LN + CL L
Sbjct: 2 KESIEDPEEFWAEQAEELDW-FKPWDK-VLD--WSNPPFAKWFVGGKLNASYNCLDRHLK 57
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMP 241
+ N VAI+W + DES +TY+EL +V AN L ++ KGD +AI MP
Sbjct: 58 AGRG----NKVAIIWEGEPGDESRT--ITYRELYREVCRFANVLKSLGVKKGDRVAIYMP 111
Query: 242 MTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
M I LA ++ AG F+A +A R+ +K+K + T D R
Sbjct: 112 MIPELPIAMLACARIGAIHSVVFAG---------FSAEALADRINDAKSKLLITADGGYR 162
Query: 293 GGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPN 346
GG+ PL V L P K IV+ G +V P+ E +D+ W D ++
Sbjct: 163 GGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEV--PMVEGRDVWWHDLMAKA-----SP 215
Query: 347 YYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAH------IDLK 395
Y P P+DA + IL++SG+TG+PK + T L +A D+
Sbjct: 216 YCEPE--PMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV--------YAATTFKYVFDIH 265
Query: 396 VGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLG 450
DVY W T ++GW+ G I++ NGAT +Y+G+P G++ V+ VT+
Sbjct: 266 PDDVY-WCTADIGWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFY 324
Query: 451 TVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII--E 502
T P+ ++ G +W K +R S GE N + W+ WY +I E
Sbjct: 325 TAPTAIRMLMR----FGDEWPKKHDLSSLRLLGSVGEPINPE--AWM----WYYEVIGKE 374
Query: 503 SCGGTELSSAYIQ----GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQP 551
C + + Q G ++ P GA +A I+DE G
Sbjct: 375 RC---PIVDTWWQTETGGHMITPLP-GATPLKPGSATRPFPGVEPAIVDEEGNEVEG--- 427
Query: 552 CVGEVGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G G YL R + DHE + YF + G GD +R
Sbjct: 428 --GVEG----YLVIKRPWPGMLRTIYGDHERYVKTYFS---KFPGYYFT--GDGARRDED 476
Query: 603 GYIIVQGRADDTMNLGG 619
GY + GR DD +N+ G
Sbjct: 477 GYYWILGRVDDVINVSG 493
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-28
Identities = 139/528 (26%), Positives = 228/528 (43%), Gaps = 75/528 (14%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ PEA+W I + + + +LD ++ W G LN+ + R E
Sbjct: 1 KEPEAFWAEQANLID--WYKPWEKVLDNSNPPFT--RWFVGGRLNLCYNAV----DRHIE 52
Query: 190 D---NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
D + +A+++ D TY EL ++V +A L + KGD + I MPM
Sbjct: 53 DGRGDQIALIY--DSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPE 110
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
AVI LA G + + FA++E+A+R+ +K K I T F + GR P Y +L
Sbjct: 111 AVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVP-YKPLLD 169
Query: 306 AA-------PLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
A P K ++L V PL+ +DL W + ++ V PV++
Sbjct: 170 KALELSQHKPHKVLILNR--GQVPAPLKPGRDLDWAELMAKARPVD------CV--PVES 219
Query: 358 V--VNILFSSGTTGEPKAIPWTQLSSIR-----CTAEGWA--HI-DLKVGDVYCWPTNLG 407
+ IL++SGTTG+PK + +R A W+ +I +K GDV+ +++G
Sbjct: 220 TDPLYILYTSGTTGKPKGV-------VRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVG 272
Query: 408 WVMG-PVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLVKAWR-- 460
WV+G I++ L+GAT LY+G P+ ++ + +++ GV L T P+ ++A R
Sbjct: 273 WVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQ 332
Query: 461 --NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI---Q 515
+ ++ D + +R+ GE + W+ K +I+ TE
Sbjct: 333 DPDGEYIKKYDLSSLRALFLAGERLDSPTLEWI-EKTLGVPVIDHWWQTETGWPITANCV 391
Query: 516 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADH 574
G L P G+ + +LDE G +G + + PL G L D
Sbjct: 392 GLELLPIKPGSPGKPVPGYDVQVLDETGEELGPG--ELGNIVIKLPLPPGCLLTLWG-DD 448
Query: 575 E---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
E ++Y P Y GD + GY+ V GR DD +N+ G
Sbjct: 449 ERFKKLYLNKFPGY-----YDTGDSGYKDEDGYLFVMGRTDDVINVAG 491
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 163/587 (27%), Positives = 234/587 (39%), Gaps = 163/587 (27%)
Query: 112 RAYKDPITSFRLFQKFTVEHPEAYW-EIALKEIS------VVFREAPKCILDRTDKSKHG 164
A D L+Q+ +VE PE +W E A K + V I
Sbjct: 11 NALIDMEQYKALYQE-SVEDPEGFWAEQA-KRLDWFKPFDTVLDWNAPFI---------- 58
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + VAI+W D +S +TY+EL +V AN
Sbjct: 59 -KWFEDGELNVSYNCL--DRHLKTRGDKVAIIWEGDDPGDSRK--ITYRELHREVCRFAN 113
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIAT 274
AL ++ KGD +AI MPM A + LA ++ G F+A +A
Sbjct: 114 ALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGG---------FSAEALAD 164
Query: 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-Q 328
R+ + AK + T D +RGG+ PL + V L P K IV+ G DV E +
Sbjct: 165 RIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDV--DWVEGR 222
Query: 329 DLSWKDFLSSV-DYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W + ++ D P P+DA + IL++SG+TG+PK + T T
Sbjct: 223 DLWWHELVAGASDECE------PE--PMDAEDPLFILYTSGSTGKPKGVLHT-------T 267
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQG---S 431
G +A + D K GDVY W T ++GWV G I++ NGAT +++G
Sbjct: 268 G-GYLVYAAMTMKYVFDYKDGDVY-WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNY 325
Query: 432 PLERSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLEGLDWTKIRSFAS------TGE 481
P F + + VT+ T P +L+K EG + K +S GE
Sbjct: 326 PDPGRFWEVIDKHKVTIFYTAPTAIRALMK--------EGDEHPKKYDLSSLRLLGSVGE 377
Query: 482 TSNVDDDLWLSSKAWYNAII--ESC-----------GGTELSSAYIQGSLLQPQAFGAFS 528
N + W WY ++ E C GG ++ P GA
Sbjct: 378 PIN--PEAWE----WYYKVVGGERCPIVDTWWQTETGGIMITPL--------P---GATP 420
Query: 529 TATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE 575
+A ++DE G P GE G L D R + DHE
Sbjct: 421 LKPGSATRPLPGIQPAVVDEEGNPLEG-----GEGG----NLVIKDPWPGMMRTIYGDHE 471
Query: 576 ---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ YF +KGM GD +R GY + GR DD +N+ G
Sbjct: 472 RFVKTYF---STFKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSG 513
|
Length = 637 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-26
Identities = 71/277 (25%), Positives = 105/277 (37%), Gaps = 41/277 (14%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 419
IL++SGTTG+PK + + + + I L GDV L V+G L +
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L G T+ LY+G P SF + ++ VTVL VP+L A G D + +R S
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLLISG 124
Query: 480 GETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
GE L + I+E G TE S + + G T
Sbjct: 125 GEP------LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPG-------TV 171
Query: 535 GLVILD-ECGVPYPDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 584
G + E V + +P GEVG + Y A E+ ++
Sbjct: 172 GRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWY----- 226
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
R GD+ GY+ + GR+ D + +GG
Sbjct: 227 -------RTGDLGYLDEEGYLYITGRSKDLIKVGGEN 256
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 149/558 (26%), Positives = 220/558 (39%), Gaps = 105/558 (18%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVF------REAPKCI--LDRTDKSKHGGTWLPGSV 172
+ K +V+ P +W +I+ F C LD K W G
Sbjct: 32 YMEMYKRSVDDPAGFWS----DIASQFYWKQKWEGDEVCSENLDVR-KGPISIEWFKGGK 86
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI CL N + +AI W + + +TY EL ++V +AN L +
Sbjct: 87 TNICYNCL-DRNVEAGNGDKIAIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVK 143
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGDA+ I +PM + I LA G V + F+A +A R+ K K + T + +
Sbjct: 144 KGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVK 203
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAI------GNDVGIPL---------RE-------QD 329
RG K + LK IV A+ G VGI L RE +D
Sbjct: 204 RG-------PKTI---NLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRD 253
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAV-----VNILFSSGTTGEPKAIPWTQLSSIRC 384
+ W+D + PNY P V+ V + +L++SG+TG+PK + T +
Sbjct: 254 VWWQDVV--------PNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVY 303
Query: 385 TAEGWAH-IDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK--- 439
TA + + D K DVY + GW+ G + + LNGAT+ +++G+P G+
Sbjct: 304 TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWD 363
Query: 440 FVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSN----------VDD 487
V VT+ T P+LV++ + +R S GE N V D
Sbjct: 364 IVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGD 423
Query: 488 DLWLSSKAWYNAIIESCGG---TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV 544
S W+ GG T L A+ PQ G+ + VI+DE G
Sbjct: 424 SRCPISDTWWQT---ETGGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGK 473
Query: 545 PYPDDQPCVGEVGLFPLYLGASDRLLNADH---EEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+ C G + + + GA R L DH E YF+ Y GD R
Sbjct: 474 EI--EGECSGYLCVKKSWPGAF-RTLYGDHERYETTYFKPFAGY-----YFSGDGCSRDK 525
Query: 602 GGYIIVQGRADDTMNLGG 619
GY + GR DD +N+ G
Sbjct: 526 DGYYWLTGRVDDVINVSG 543
|
Length = 666 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-22
Identities = 131/528 (24%), Positives = 220/528 (41%), Gaps = 55/528 (10%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECC 179
+ F + ++E PEA+W + I ++ P+ ILD + W G N+ C
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRID--WQTPPQRILD--YSNPPFARWFAGGRTNL--CH 55
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
H + +A+V + +TY++L +V + A+AL + +GD + I
Sbjct: 56 NALDRHLDERGEQLALVTVSSETGQERT--LTYRQLHREVNVFASALRALGVGRGDRVLI 113
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM AV LA G + + FA+ +A R+ + K I + D +RGG+ P
Sbjct: 114 YMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIP 173
Query: 299 LYSKVLGAAPLKAIVLPA--IGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV 355
Y +L AA +A P + D G+ P+R + +D VDY + PV
Sbjct: 174 -YKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL--IPGRD----VDYAALRTQHEDAQVPV 226
Query: 356 DAVVN-----ILFSSGTTGEPKAIPW-TQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
+ + + IL++SGTTG+PK + ++ WA ++ G V +++GWV
Sbjct: 227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWV 286
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQDAGVTVLGTVPSLVKAWR--NTN 463
+G I+++ L GA LY+G P G V+ GV + + P+ ++ + +
Sbjct: 287 VGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA 346
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAYIQGSLLQ 520
L D + + GE + W++ +I++ TE A + G L+
Sbjct: 347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITD-GLGKPVIDNYWQTETGWPVLAIMPGLDLK 405
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGEVGLF----PLYLGASDRLLNADHE 575
P G+ L +LDE +PC E G+ PL G + D
Sbjct: 406 PVKLGSPGLPMYGYHLRVLDEA-----TGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDAR 460
Query: 576 EV--YFRGM--PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ Y+ P+Y D R GY + GR DD +N+ G
Sbjct: 461 FLKTYWSHFKRPLYSSF------DWGIRDEDGYTFILGRTDDVINVAG 502
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 3e-20
Identities = 83/302 (27%), Positives = 121/302 (40%), Gaps = 57/302 (18%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LP + A RR D A V+ + R +TY EL +V A AL
Sbjct: 7 LPELLARAA---------RRFGDKE-AYVFGDQR--------LTYAELNARVRRAAAALA 48
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ KGD +AI P + VI L + AG VVV + + A E A L AK +F
Sbjct: 49 ALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFV 108
Query: 287 QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
L + P L+ +V+ D P E+ ++ DFL++ D P
Sbjct: 109 LGLFL------GVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGD----P 156
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD------ 398
+P +P D V +ILF+SGTTG PK T + A WA L GD
Sbjct: 157 AERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLS-NAADWAEYLGLTEGDRYLAAN 214
Query: 399 ----VYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPLERSFGKFVQDAGVTVLGTVP 453
V+ + + + + GAT L L P + F + ++ +TVL P
Sbjct: 215 PFFHVFGY---------KAGVNAPLMRGATILPLPVFDP-DEVF-RLIETERITVLPGPP 263
Query: 454 SL 455
++
Sbjct: 264 TM 265
|
Length = 513 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 4e-18
Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 33/259 (12%)
Query: 210 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ +L ++ + +A L + +GD +A+ P ++ ++L + AG +V + S+
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-----KAIVLPAIGNDVGI 323
E+A +L++SK K IF KV AA + IVL + + V
Sbjct: 71 PDELAHQLKISKPKLIFCDP---------DELDKVKEAAKELGPVVRIIVLDSAPDGVLR 121
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
+D L +P+ + D +L+SSGTTG PK + LS
Sbjct: 122 I--------EDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGV---MLSHKN 170
Query: 384 CTA------EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF 437
A + DV G +S L GAT+ + E +F
Sbjct: 171 IIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE-TF 229
Query: 438 GKFVQDAGVTVLGTVPSLV 456
K ++ VT L VP +
Sbjct: 230 LKLIEKYKVTSLFLVPPIA 248
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 5e-17
Identities = 91/451 (20%), Positives = 146/451 (32%), Gaps = 88/451 (19%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY+EL E+ +A L GD +A+ + + V+ LA++ AG V + ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L + A+ + T A A ++ + + L
Sbjct: 61 AERLAFILEDAGARLLLTDS----------------ALASRLAGLVLPVILLDPLELAAL 104
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D + P Y ++++SG+TG PK + T S + A
Sbjct: 105 DDAPAPPPPDAPSGPDDLAY------------VIYTSGSTGRPKGVVVTHRSLVNLLAWL 152
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA---- 444
L D +L + +F + L GATL + ER +
Sbjct: 153 ARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPED-EERDDAALLAALIAEH 211
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS---FASTGETSNVDDDLWLSSKAWYNAII 501
VTVL PSL+ L + S GE L+ +
Sbjct: 212 PVTVLNLTPSLLAL------LAAALPPALASLRLVILGGE--------ALTPAL-VDRWR 256
Query: 502 ESCGGTELSSAY------IQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPD 548
G L + Y + + A + + G L +LD+ P P
Sbjct: 257 ARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPV 316
Query: 549 DQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+G G+ YL L A G +Y R GD+++
Sbjct: 317 GVVGELYIGGPGVARGYLN--RPELTAERFVPDPFAGGDGARLY------RTGDLVRYLP 368
Query: 602 GGYIIVQGRADDT-------MNLGGIKALLL 625
G + GR DD + LG I+A LL
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRIELGEIEAALL 399
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 92/339 (27%), Positives = 143/339 (42%), Gaps = 57/339 (16%)
Query: 166 TWLPGSVLNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
+WL +NIA + + K VA+ + D S TYKEL+E
Sbjct: 35 SWLETGKVNIAYEAIDRHADGGRKDK----VALRYL----DASRKEKYTYKELKELSNKF 86
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
AN L + KGD + I MP L + G +V + ++F + RL S+A
Sbjct: 87 ANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEA 146
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340
K + T +L K P LK ++L +G DV +D
Sbjct: 147 KVLITTPALLE--------RKPADDLPSLKHVLL--VGEDVEEGPGT-----------LD 185
Query: 341 YHPRPNYYSPVYNPV-----DAVVNIL-FSSGTTGEPKAIPWTQLSSIRCTAEG-WAHID 393
++ S ++ D IL ++SG+TG+PK + + ++ G + +D
Sbjct: 186 FNALMEQASDEFDIEWTDREDGA--ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LD 242
Query: 394 LKVGDVYCWPT-NLGWVMGPVI-LFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVL 449
L DVY W T + GWV G +F+ +LNGAT + G SP ER + ++D VTV
Sbjct: 243 LHEDDVY-WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP-ERWYR-ILEDYKVTVW 299
Query: 450 GTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSN 484
T P+ L+ A + ++ D + +R S GE N
Sbjct: 300 YTAPTAIRMLMGA--GDDLVKKYDLSSLRHILSVGEPLN 336
|
Length = 570 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 101/460 (21%), Positives = 142/460 (30%), Gaps = 152/460 (33%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL V +A L + GD + + +P VI+Y A+ G + V +
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A EI R S+AK D
Sbjct: 101 AHEIGHFARQSEAKAYIIAD---------------------------------------- 120
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
+ F DY + + V S GTTG PK IP T L S R +
Sbjct: 121 --RFSGF----DYAA---LARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARAS 171
Query: 386 AEGWAHIDLKVGDVYCWPTNLG--WVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQ 442
AE +D G VY + + L + L G T+ L+ SP ++
Sbjct: 172 AE-ACGLD--PGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDV--AFPLIE 226
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502
VT VP+L+ W + D + +R
Sbjct: 227 REKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQV------------------------ 262
Query: 503 SCGGTELSSAYIQ------GSLLQPQAFGAFSTATMTAGLV------------------- 537
GG LS + G LQ Q FG M GLV
Sbjct: 263 --GGAPLSPELARRVEERLGCPLQ-QVFG------MAEGLVNYTRLDDPPDVIMRTQGRP 313
Query: 538 --------ILDECGVPYPDDQPCVGEVG--------LFPLYLGASDRLLNADHEEVYFRG 581
I+D+ G P P GEVG Y A + A ++ ++R
Sbjct: 314 ISPADEIRIVDDQGEPVPP-----GEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368
Query: 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
GD+++ GY V GR D +N GG K
Sbjct: 369 ------------GDLVRIDADGYYRVVGRIKDQINRGGEK 396
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 43/261 (16%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL V +A L KGD + + P ++ +++LA++ AG VV+ A+
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANPLY 91
Query: 269 -AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 327
EIA +++ S AK T L K+ A ++L + +
Sbjct: 92 TPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSA----- 137
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 384
+ + + P V D + +SSGTTG K + T ++++
Sbjct: 138 -------AIDDLLFADEPEPPVVVIKQDDVAA-LPYSSGTTGRSKGVMLTHRNLIANVAQ 189
Query: 385 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL----ERSFGKF 440
G + DV + + G + L L G+ + KF
Sbjct: 190 LVAGEG-PNFDREDVTLCVLPMFHIYG----LTVILLA---LLRLGATVVVMPRFDLEKF 241
Query: 441 ---VQDAGVTVLGTVPSLVKA 458
++ VT L VP +V A
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLA 262
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 3e-14
Identities = 60/284 (21%), Positives = 94/284 (33%), Gaps = 70/284 (24%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E A L KGD +A+ +P + I Y I+ AG VVV + +
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK +
Sbjct: 85 PRELEHQLNDSGAKVLIV------------------------------------------ 102
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTA 386
+S++D L+S P PV D + + ++ GTTG PK T L +
Sbjct: 103 AISFEDALASGAPLP-----LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQI 157
Query: 387 EGWAHIDLKVGD----------VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 436
W + D ++ N + GAT L + +
Sbjct: 158 AAWVKDLREGEDRFLTALPLFHIFGLTVN---------MLLGLRLGATNVLVP-NFRPIN 207
Query: 437 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
K ++ T+ VP+L A N + D++ +R S G
Sbjct: 208 VLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGG 251
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 7e-14
Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 48/269 (17%)
Query: 210 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+TY++L + ++ + + +G+ I I +P +V + LA++LAG V V + +
Sbjct: 8 LTYRKLLTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGE 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLRE 327
+ + + + K + T R F L L+ +V+ G + LR
Sbjct: 68 EGLRSACKQAGIKTVIT-------SRAF------LEKLKLEGLVVLLEGVRIVYLEDLRA 114
Query: 328 QDLSWKD----FLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQ---L 379
+ +S D FL++ P + D ILF+SG+ G PK + + L
Sbjct: 115 K-ISKADKLKAFLAA--KLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATL--------ALYQG 430
++I A A IDL DV ++G + LF +F L L +Y
Sbjct: 172 ANIDQIA---AVIDLNTEDV---------LLGALPLFHAFGLTVTLLLPLLTGLRVVYYP 219
Query: 431 SPLE-RSFGKFVQDAGVTVLGTVPSLVKA 458
+PL+ + + ++D T+L P+ ++
Sbjct: 220 NPLDAKKIAELIRDYKATILCGTPTFLRG 248
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 94/400 (23%), Positives = 165/400 (41%), Gaps = 73/400 (18%)
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK--SKHGGTWLPGSVLNIA 176
S+ F + +++ PEA+W + I ++ +LD ++ ++ W G N+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRID--WQTPFTQVLDYSNPPFAR----WFVGGRTNLC 55
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
+ H K +A++ DE T+++L ++V +A L ++ +GD
Sbjct: 56 HNAV--DRHLAKRPEQLALIAVSTETDEERT--YTFRQLHDEVNRMAAMLRSLGVQRGDR 111
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+ I MPM A LA G + + FA+ +A R+ +K I + D RGG+
Sbjct: 112 VLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGK 171
Query: 296 KFPLYSKVLGAAPLKAIVLPA---------------IGNDVGI-PLREQDLSWK---DFL 336
P Y +L A A P G DV LR Q L + ++L
Sbjct: 172 VVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWL 230
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA------ 390
S + P+Y IL++SGTTG+PK + R T G+A
Sbjct: 231 ESNE----PSY-------------ILYTSGTTGKPKGVQ-------RDTG-GYAVALATS 265
Query: 391 --HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQD 443
I K G+ + +++GWV+G I+++ L G +Y+G P G + V+
Sbjct: 266 MDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEK 325
Query: 444 AGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGE 481
V + + P+ ++ + + L D + +R+ GE
Sbjct: 326 YKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGE 365
|
Length = 629 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 70/287 (24%), Positives = 110/287 (38%), Gaps = 61/287 (21%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
H + N +AI + +TYK+ E V VAN L+ SK IAI +
Sbjct: 8 KKHASLQPNKIAIKENDRV--------LTYKDWFESVCKVANWLNEKESKNKTIAILLEN 59
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+ + ++ +AG+ V + + E+ RL +S A I T+ + L
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLN---------- 109
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
L I D WK + Y P Y+P+ N +A +
Sbjct: 110 -----DLPDEEGRVIEID----------EWKRMIE--KYLPT---YAPIENVQNAPFYMG 149
Query: 363 FSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS- 418
F+SG+TG+PKA Q S S C D + + V+ L S
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVH----------DFHMKREDS--VLIAGTLVHSL 197
Query: 419 FLNGATLALYQGSP--LERSFGKF-----VQDAGVTVLGTVPSLVKA 458
FL GA LY G L R F ++ ++V+ TVP+++++
Sbjct: 198 FLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLES 244
|
Length = 487 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-13
Identities = 99/487 (20%), Positives = 175/487 (35%), Gaps = 88/487 (18%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVR 245
+ + VA++++E +TY+EL E+V +A+ L GD +AI
Sbjct: 27 KDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPE 82
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD------FILRGGRKFPL 299
I LAI+ G V V I + ++A L S++K IF ++ + +
Sbjct: 83 WAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKV 142
Query: 300 YSKVLGAAPLKAIVLP-----AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP 354
++ ++ V + D GI L D S R P
Sbjct: 143 VDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID--------SAGLEGRIAPPKP---- 190
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVY-CW-PTNLGWVMG 411
D + I+++SGTTG PK + T + + A + + GD + P L +
Sbjct: 191 -DDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLP--LAHIFE 247
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSL------------VKAW 459
L G L++ P R+ + +++ TV+ VP + KA
Sbjct: 248 RAFEGGLALYGGVTVLFKEDP--RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAP 305
Query: 460 RNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 518
L + + L ++ + + I ++ GG + A G+
Sbjct: 306 AVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGG-RIRYALSGGAP 364
Query: 519 LQPQAFGAFSTA-----------TMTAGLVILDECGVPYPDDQPCVGEVG-LFPLYLGAS 566
L P+ F + T T+ +V ++ P D+ +G VG P G
Sbjct: 365 LSPEL-LHFFRSLGIPILEGYGLTETSAVVSVN------PPDRFVLGTVGKPLP---GIE 414
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLR--------------RHGDIIKRTVGGYIIVQGRAD 612
++ AD E+ RG + KG R GD+ + GY+++ GR
Sbjct: 415 VKI--ADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKK 472
Query: 613 DTMNLGG 619
+ + L
Sbjct: 473 ELIKLSN 479
|
Length = 613 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 93/444 (20%), Positives = 140/444 (31%), Gaps = 133/444 (29%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL + +A AL + GD +A +P V++YLA G V+ I +
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ LR ++A + + +P
Sbjct: 62 ERELGFILRQARA----------------------------RVLFVPD------------ 81
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
++ F DY P D V +L++SGTTGEPK + T L+ +R
Sbjct: 82 --EFRGF----DYAAMP----------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125
Query: 386 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFG 438
E L DV P+ L + G FL G L L G+ +
Sbjct: 126 VERLG---LTPDDVVLMPSPLAHITG-------FLYGLELPLLLGATVVLQDRWDPARAL 175
Query: 439 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498
+ +++ GVT + G D +R F G V +L
Sbjct: 176 ELIREHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAP--VPREL--------- 224
Query: 499 AIIESC---GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-------- 547
G ++ AY G P G P P
Sbjct: 225 --ARRAAEALGAKVVRAY--GMTEVPLVTVGTPDD---PDDKRAATDGRPVPGVEVRIVD 277
Query: 548 -DDQP----CVGEV-----GLFPLYLGASDRLLNADH--EEVYFRGMPMYKGMCLRRHGD 595
D GE+ LF LG D N + ++ +FR GD
Sbjct: 278 DDGNDVPPGEEGELQVRGPQLF---LGYLDPPDNTEAFTDDGWFRT------------GD 322
Query: 596 IIKRTVGGYIIVQGRADDTMNLGG 619
+ + GY+ + GR D + GG
Sbjct: 323 LGRLDADGYLRITGRKKDIIIRGG 346
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 1e-11
Identities = 96/461 (20%), Positives = 153/461 (33%), Gaps = 122/461 (26%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
+A+V+ + +TY EL E+ +A L GD +A+ + + V+ L
Sbjct: 4 IALVYGDRS--------LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + ++ A +A L S A+ + T +
Sbjct: 56 AILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDE----------------------- 92
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTG 369
L + + L ++ P VDA + ++++SG+TG
Sbjct: 93 ------------SLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTG 140
Query: 370 EPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------LFSSFLN 421
PK + +R + I L D + + P+ ++ + LN
Sbjct: 141 RPKGVAVPHRGVVRLVRNTNY--IALDPDDRFL-------QLSPLSFDASTFEIWGALLN 191
Query: 422 GATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFA 477
G L L L + + + GVTVL +L + L GL R
Sbjct: 192 GGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPEALAGL-----RQLL 246
Query: 478 STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAG- 535
G+ + A ++ +C G L + Y G P FST +T
Sbjct: 247 VGGDVLSP---------AHVRRVLAACPGLRLINGY--G----PTENTTFSTCHVITRLD 291
Query: 536 ----------------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNA---- 572
+ ILDE G P P P VG GL YL + L A
Sbjct: 292 EAADSIPIGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPE--LTAERFV 349
Query: 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
+ G +Y R GD+ + G I GR D
Sbjct: 350 PDP--FGPGERLY------RTGDLARWRPDGNIEFLGRIDR 382
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
A+V+ + R TY+E ++ +A+AL + KGD +A+ P T + +
Sbjct: 21 TAVVYGDRR--------YTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHF 72
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLK 310
+ +AG V+V + A +IA L S+AK +F Q+F L + L K
Sbjct: 73 GVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEF-------LSLAEEALALLSTK 125
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD--AVVNILFSSGTT 368
I+ I ++ ++D L+ D P P D +++ ++SGTT
Sbjct: 126 EIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDP------LPIPPDDEWDPISLNYTSGTT 179
Query: 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402
G PK + +T + + VY W
Sbjct: 180 GNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLW 213
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 90/436 (20%), Positives = 145/436 (33%), Gaps = 70/436 (16%)
Query: 199 EDRCDESAVNL----MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAI 253
D A+ +TY EL + +A L G+ +AI ++ V+ LA+
Sbjct: 238 ATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAV 297
Query: 254 ILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV 313
+ AG V + + A +A L S+ + TQ
Sbjct: 298 LKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQA------------------------- 332
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+DVG+P D + + + P DA+ I+++SG+TG+PK
Sbjct: 333 -HLRVDDVGLPGLALDDALSEIPDTDP--------IPQALLGDALAYIIYTSGSTGQPKG 383
Query: 374 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL----YQ 429
+ + + A L D +L + +F + L GA L L Q
Sbjct: 384 VRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQ 443
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
P + ++ G+TVL VP L++ ++R S GE +
Sbjct: 444 VDPAA--LLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLAL 501
Query: 488 DLWLSSKAWYNAIIESCGG-----TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
L A + + G + S I L G T L ILD+
Sbjct: 502 VQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQ---LYILDQ- 557
Query: 543 GVPYPDDQPC--VGEVGLFPLYLGASDRLLNADH-EEVYFRGMPMYKGMCLRRHGDIIKR 599
P GE+ + L L A L D E + +Y R GD+ +
Sbjct: 558 ---GLRPLPLGVPGELYIAGLGL-ALGYLNRPDLTAERFIAL-RLY------RTGDLARP 606
Query: 600 TVGGYIIVQGRADDTM 615
G + GR D +
Sbjct: 607 LADGALEYLGRKDSQV 622
|
Length = 642 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 49/205 (23%), Positives = 73/205 (35%), Gaps = 29/205 (14%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTV 244
R+ + A+V+ + TY EL V VA AL D KGD +A +
Sbjct: 21 ARRYPDKTALVFGDRS--------WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSD 72
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+++LA AG V V + E+A L S A+ + P L
Sbjct: 73 AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA------PTAEAAL 126
Query: 305 GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P+ ++L + + RE W DF V D + IL++
Sbjct: 127 ALLPVDTLILSLV-----LGGREAPGGWLDFAD--WAEAGSVAEPDVELADDDLAQILYT 179
Query: 365 SGTTGEPK-------AIPWTQLSSI 382
SGT PK A+ +S I
Sbjct: 180 SGTESLPKGAMLTHRALIAEYVSCI 204
|
Length = 523 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 37/269 (13%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWV--MG 411
D V I F+SGTTG PK I + + L+ DV+ L + +G
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFH-RDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG 205
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN-TNCLEGLDW 470
++LF + + L Q +P K +Q+ T+L T P+ A+R ++ D
Sbjct: 206 GLVLFPLRFGASAVLLEQATP--PLLLKAIQEHRATILFTAPT---AYRAMLIKVKAFDI 260
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGS--LLQPQAF 524
+ +R S GET + +W + WY II+ G TE+ +I + +P A
Sbjct: 261 SSLRKCVSAGET--LPAKVW---QDWYERTGLKIIDGIGATEMLHIFISANEENAKPGAT 315
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 584
G A I+D+ G P GE G + R L+ + ++ Y R
Sbjct: 316 G-KPVPGYEA--RIVDDQGNEVPR-----GEAGRLAVRGPTGCRYLDDERQQEYVRDGWN 367
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
GDI ++ GY R+DD
Sbjct: 368 VT-------GDIFRQDEDGYFHYVARSDD 389
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 87/333 (26%), Positives = 127/333 (38%), Gaps = 54/333 (16%)
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
L+ +L A L A+V+PA L DL +D S P+ D
Sbjct: 37 ELWEAMLAAIKLGAVVIPATTL-----LTPADL--RDRFS--RGKPKAIVADETR--ADD 85
Query: 358 VVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWV-MGPV 413
+ + F+SGTTG PK + T +S T W I L+ GD++ ++ GW
Sbjct: 86 PILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMY-W--IGLQPGDIHLNISSPGWAKHAWS 142
Query: 414 ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDW 470
F+ + GAT+ + R + ++ GVT P+ WR L D
Sbjct: 143 SFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPT---VWRMFIQQDLAQYD- 198
Query: 471 TKIRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529
++R S GE N + + KAW I + G TE ++A I S Q G+
Sbjct: 199 VRLREAVSAGEPLNPEVIERV--KKAWGLTIRDGYGQTE-TTAMIGNSPGQKVKPGSMGR 255
Query: 530 ATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHEEVYFR 580
+V+LD+ G P GE+ GL Y+G ++ A Y
Sbjct: 256 PLPGYRVVLLDDEGKEIPVT---EGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYY-- 310
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
R GD R GY+ GRADD
Sbjct: 311 -----------RTGDKAYRDEDGYLWFVGRADD 332
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 108/480 (22%), Positives = 160/480 (33%), Gaps = 109/480 (22%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241
++H + + +A++ E R ++Y EL ++ +A L + GD + + +P
Sbjct: 35 TDHAARYPDRIAVIDGERR--------LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLP 86
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
I + A++ G V S A E+ +A + G P
Sbjct: 87 NVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFAR 145
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+++ P V+ + + P + HP + V
Sbjct: 146 ELVAKHPTLRHVI--VAGEAEHPSVLEAAL---------CHPAGLFTPAPPADAGEVAFF 194
Query: 362 LFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVY--CWPTNLGWVMGPVILF 416
S GTTG PK IP T S+R +AE VY P + +
Sbjct: 195 QLSGGTTGTPKLIPRTHNDYYYSVRASAEICG---FDQQTVYLCALPAAHNFPLSSPGAL 251
Query: 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
FL G T+ L E F ++ GVTV VP L
Sbjct: 252 GVFLAGGTVVLAPDPSPELCF-PLIERHGVTVTALVPPLAS------------------- 291
Query: 477 ASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYIQ------GSLLQPQAFG 525
LWL + W A + S GG LS+ + G LQ Q FG
Sbjct: 292 ------------LWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQ-QVFG 338
Query: 526 AFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFPLYLGASDRLL--- 570
M GLV I+ G P PDD+ V + P+ G LL
Sbjct: 339 ------MAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRG 392
Query: 571 --------NAD-HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
A H F Y R GD+++R GY++V+GR D +N GG K
Sbjct: 393 PYTIRGYYRAPEHNARAFDADGFY------RSGDLVRRDPDGYLVVEGRVKDQINRGGEK 446
|
Length = 542 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 32/291 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ++V AN L + KGD +AI +P +AVI Y +LAG +VV +
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK I D + FP + V A ++ +++ I + + P +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLV------FPRVTNVQSATKIEHVIVTRIADFLPFP---K 160
Query: 329 DLSW-------KDFLSSVDYHPRPNYYSPVYNPVDAVVNIL-----------FSSGTTGE 370
+L + + + V + ++ V V+ V + ++ GTTG
Sbjct: 161 NLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGF 220
Query: 371 PKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLAL 427
PK + T + + T G W + + +V V G ++ S + G + L
Sbjct: 221 PKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVL 280
Query: 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
++ F + ++ VT+ P++ A N+ L+ D + IR+ S
Sbjct: 281 IPKFDMKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACIS 330
|
Length = 563 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 72/282 (25%), Positives = 106/282 (37%), Gaps = 48/282 (17%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSS 418
+ F+SGTTG+PK + + + A +DL+ DVY W T + GWV G + +
Sbjct: 94 LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSF 476
LNG TL + +G + +++ VTV T P+ ++ D + +R
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212
Query: 477 ASTGETSNVDDDLWLSSK-------AWYN----AI-IESCGGTELSSAYIQGSLLQPQAF 524
AS GE N + +W W+ AI I + G + GS+ +P
Sbjct: 213 ASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP----GSMGRP--L 266
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-------FPLYLGASDRLLNADHEEV 577
A + D Q VGE+ L F YLG +R
Sbjct: 267 PGIEAAVIERD---GDGLTPVTGPGQ--VGELALKPGWPSMFRGYLGNEERY------AS 315
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
F Y GD+ R GY GRADD + G
Sbjct: 316 SFVD-GWY------LTGDLAYRDEDGYFWFVGRADDVIKTAG 350
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 64/279 (22%), Positives = 101/279 (36%), Gaps = 34/279 (12%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPT-NLGWVM 410
D + +++SGTTG PK +P + A +A+ IDL+ DV+ W + GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAY 142
Query: 411 G-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
G + G T +G + ++ GVT P+ +
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202
Query: 470 WT-KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA-FGAF 527
K+R +S GE N + W + I + G TE L + G+
Sbjct: 203 IKLKLRVASSAGEPLNPEVVRWFQA-NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSM 261
Query: 528 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM---PM 584
+ +LD+ G P D GE G + + +S L +F G P
Sbjct: 262 GLPLPGYRIAVLDDDGQPLAD-----GEPGQLAIDVASSPLL--------WFSGYWDDPE 308
Query: 585 YKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ GD+++R GY GRADD + G
Sbjct: 309 KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAG 347
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 8e-08
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 49/295 (16%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
L I + + RK + A+ + R TY EL E+V +ANAL +
Sbjct: 6 LTIGR---ILRHGARKHPDKEAVYFDGRR--------TTYAELDERVNRLANALRALGVK 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 290
KGD +A+ + + Y A+ G V+ I EIA L ++ + + +F+
Sbjct: 55 KGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV 114
Query: 291 LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + +L P V+ G+ PL + +++ L++ + P
Sbjct: 115 -------PLLAAILPQLPTVRTVI-VEGDGPAAPLAPEVGEYEELLAA---AS-DTFDFP 162
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCTAEGWAHIDLKVGDVY-----CWP 403
+ DA +L++SGTTG PK + + L W + L DVY +
Sbjct: 163 DIDENDAAA-MLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFH 219
Query: 404 TN-LGWVMGPVILFSSFLNGATLAL---YQGSPLERSFGKFVQDAGVTVLGTVPS 454
+ G P + + + GA + + L ++ VT VP+
Sbjct: 220 VHAWGL---PYL---ALMAGAKQVIPRRFDPENLL----DLIETERVTFFFAVPT 264
|
Length = 521 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-08
Identities = 104/466 (22%), Positives = 181/466 (38%), Gaps = 82/466 (17%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYV 259
+TY +L E+V + L + SK D + I M T+ +I L+ ++ GY
Sbjct: 93 LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI----VLP 315
V S+ D I +L ++ GI + I F + A L V+
Sbjct: 153 VKSLIDRI--ETITPKLIITTNYGILNDEII-----TFT--PNLKEAIELSTFKPSNVIT 203
Query: 316 AIGNDV----------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILF 363
ND+ IP LSW D + + + + +Y Y PV++ + IL+
Sbjct: 204 LFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYE--YVPVESSHPLYILY 261
Query: 364 SSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
+SGTTG KA+ + + W + I+ + V +++GWV L+ S G
Sbjct: 262 TSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLG 321
Query: 423 ATLALYQG-----SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
T +++G +E ++ VT T+P ++ T+ + T IR
Sbjct: 322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP----EATIIR--- 374
Query: 478 STGETSNVDDDLWLSSKAWYNAI---IES---------CGGTELSSAYIQGSLLQPQAFG 525
S + SN+ ++W + +I IE+ G TE+ Y+ +G
Sbjct: 375 SKYDLSNL-KEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYC-------YG 426
Query: 526 AFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578
+ G+ IL E G ++ +GEV F L + S ++E +
Sbjct: 427 HINIPYNATGVPSIFIKPSILSEDGKELNVNE--IGEVA-FKLPMPPSFATTFYKNDEKF 483
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALL 624
+ + G GD+ + GY + R+DD + + G K L
Sbjct: 484 KQLFSKFPGY--YNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQL 527
|
Length = 647 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 62/289 (21%), Positives = 100/289 (34%), Gaps = 67/289 (23%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL----- 415
++++SG+TG+PK + T +I C + LG G +L
Sbjct: 104 VIYTSGSTGKPKGVVITH-RNI-CNF------------LRAEGAILGIRPGDRVLQFASI 149
Query: 416 ---------FSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
F++ L G TL + R +F+ VTV PSL+ +
Sbjct: 150 AFDVSILEIFTTLLAGGTLVI--PPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV 207
Query: 465 LEGLDWTKIRSFASTGET-SNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQP 521
+R+ GE D W + N G TE +++ + + +P
Sbjct: 208 ------PSLRTLILGGEACPQALVDRWSKPRRLLNT----YGPTEATVTATASRLTPGKP 257
Query: 522 QAFG-AFSTATMTAGLVILDECGVPYPDDQPCV--GEVGLFPLYLG----ASDRLLNADH 574
G T +LD PD +P V G VG L +G A L +
Sbjct: 258 VNIGRPLPNYTC----WVLD------PDLEPLVPIGAVG--ELCIGGPGVARGYLNRPEL 305
Query: 575 -EEVYFRG--MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 620
E + G + R GD+++ G + GR DD + + G
Sbjct: 306 TAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQ 354
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 41/223 (18%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+++L + +A AL G +A+ ++ V++ A +L G + +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
E +L + + T L K A L I E
Sbjct: 61 NERTNQLEDLDVQLLLTDS---------LLEEKDFQADSLDRIEAAG--------RYETS 103
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
LS +D + ++F+SGTTG+PKA+P T + +A G
Sbjct: 104 LS-------------------ASFNMDQIATLMFTSGTTGKPKAVPHT-FRNHYASAVGS 143
Query: 390 AHIDLKVGDVYCWPTNLGW--VMGPVILFSSFLNGATLALYQG 430
+L + W +L + G ILF + GATL +
Sbjct: 144 KE-NLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK 185
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 77/291 (26%), Positives = 111/291 (38%), Gaps = 30/291 (10%)
Query: 356 DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ++++SG+TG+PK AI L++ C + L D + + +G
Sbjct: 656 DNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER--LQLAADDSMLMVSTFAFDLGVT 713
Query: 414 ILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
LF + +GATL L + +F + D GVTVL VPS ++A + +
Sbjct: 714 ELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--R 771
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTA 530
R+ GE VD + + +I G TE + L + + FG
Sbjct: 772 PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIG 831
Query: 531 TMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPM 584
A GL ILD P P VGE LY+G A F P
Sbjct: 832 QPLANLGLYILDHYLNPVP--VGVVGE-----LYIGGAGLARGYHRRPALTAERFVPDPF 884
Query: 585 -YKGMCLRRHGDIIKRTVGGYIIVQGRADDT-------MNLGGIKALLLPL 627
G L R GD+ + G I GR D + LG I+A LL
Sbjct: 885 GADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQ 935
|
Length = 3956 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E A L GD +A+ +P + I++ I+ G V V ++ F
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI-------VLPAIGNDVG 322
E++ L + A+ + D + P+ +V L+ + VLPA
Sbjct: 120 HELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPT--- 170
Query: 323 IPL-------REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP 375
+PL R D L ++ P P +DA+ + ++ GTTG PK
Sbjct: 171 LPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPA--LDALAALNYTGGTTGMPKGCE 228
Query: 376 WTQ 378
TQ
Sbjct: 229 HTQ 231
|
Length = 567 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 93/467 (19%), Positives = 145/467 (31%), Gaps = 154/467 (32%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVR 245
K + A+V D +TY EL+E+ +A L + GD +A+ +
Sbjct: 2 AKHPDRPALVVGGDT--------LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPD 53
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
A LA + AG V + S A R+ K+L
Sbjct: 54 AYAAILACLKAGAAYVPLDPSQPA----ERIA------------------------KILE 85
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
AA A+V P Y ILF+S
Sbjct: 86 AAGPAALV---------------------------ADPDDLAY------------ILFTS 106
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------- 414
G+TG+PK + + S + W D + + G V
Sbjct: 107 GSTGKPKGVQISHANLASFL-----DWMVEDFDLTE------------GDVFSNQAPFSF 149
Query: 415 ------LFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
LF + +GATL + PL +F+++ G+TV +VPS +
Sbjct: 150 DLSVFDLFPALASGATLYVIPKEQIADPLA--LFEFLKEHGLTVWVSVPSFASLLLLSRE 207
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSA--YIQGS 517
L +R+F GE +KA II G TE + A + +
Sbjct: 208 LNPESLPSLRTFLFCGEVLPKKL-----AKALRRRFPNARIINLYGPTEATVAVTAYEVT 262
Query: 518 LLQPQAFG------AFSTATMTAGLVILDECGVPYPDDQP---CVGEVGLFPLYLGASDR 568
+ILDE G P P + + + P YL ++
Sbjct: 263 PEPLSRNEPLPIGYPKPGLR----ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEK 318
Query: 569 LLNADHEEVYFR--GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
+ +F+ G Y R GD++ G ++ GR D
Sbjct: 319 -----TAKAFFQDEGQRWY------RTGDLVYLEDDGLLVYLGRKDF 354
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 94/433 (21%), Positives = 152/433 (35%), Gaps = 72/433 (16%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL+E+V NAL + + + + + + T + I G V V I
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK-AIVLPAIGNDVGIPLRE 327
+ L S+A+ + + + + L P L+ IV+ G
Sbjct: 92 DDYRYYLNDSRARVLVISEELW------EVLKPALQKDPHLRHVIVVGGAGPGA------ 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
LS+ +++ S D + L+SSG+TG PK + + TAE
Sbjct: 140 --LSYAQLIATAAEELEAAATSA-----DDMAFWLYSSGSTGRPKGVVHLH-HDMLVTAE 191
Query: 388 GWAHIDLKV--GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDA 444
+A L + DV L + G L+ GAT L P + ++
Sbjct: 192 AYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERY 251
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIES 503
TV VP+L A D + +R S GE + ++ K + I++
Sbjct: 252 KPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEA--LPAEIGYRWKELFGLEILDG 309
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPL 561
G TE+ ++ +P A ++ G + ++DE G D GE+G
Sbjct: 310 IGSTEMLHIFLSN---RPGAVKYGTSGKPVPGYEVKLVDEDGEEVAD-----GEIG---- 357
Query: 562 YLGASDRLLNADHEEVYFRG---MPMY-----------KGMCLRRHGDIIKRTVGGYIIV 607
E++ RG Y G R GD R GY
Sbjct: 358 --------------ELWVRGDSSAAGYWNRREKTRETFVGEWTRT-GDKYYRDEDGYYWY 402
Query: 608 QGRADDTMNLGGI 620
GR+DD + + GI
Sbjct: 403 CGRSDDMLKVSGI 415
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 6e-07
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ EL E+V +A L + GD +AI VI LAI+ AG V V I + +
Sbjct: 6 ITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSS 65
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+A L S A+ +F +D
Sbjct: 66 PEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 35/283 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY L E+V+ +A+ L + ++G+ +AI + + V LAG V V I
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFP-----LYSKVLGAAPLKAIVLPAIGNDVGI 323
A ++A L + + T L L + ++ P A
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPA-- 143
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
SW L+ D P PV + A IL++SG+TG PK + + ++
Sbjct: 144 -------SWPKLLALGDADPPH----PVIDSDMAA--ILYTSGSTGRPKGVVLSH-RNLV 189
Query: 384 CTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ 442
A+ A ++ + D L + G L ++F GAT+ L+ L R K ++
Sbjct: 190 AGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALE 248
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-----IRSFASTG 480
G+T L VP L W L LDW + +R ++G
Sbjct: 249 KHGITGLAAVPPL---WAQ---LAQLDWPESAAPSLRYLTNSG 285
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 22/251 (8%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY + +V +ANAL+++ GD +A T R + +Y A+ G V+ ++ +
Sbjct: 27 TYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSP 86
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQ 328
+IA + ++ K IF D L PL + P +KA+V+ + L
Sbjct: 87 EQIAYIINHAEDKVIFVDDDFL------PLLEAIAPRLPTVKAVVVYDDADMPETSL-PN 139
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-----R 383
++++ L P Y P + A + ++SGTTG PK + ++ S +
Sbjct: 140 VYAYEELLEEES----PEYEWPELDENTAAG-LCYTSGTTGNPKGVVYSHRSLVLHTLAS 194
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+ L D + V + +++ + GA L L S +++
Sbjct: 195 ALPDSLG---LSESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251
Query: 444 AGVTVLGTVPS 454
VTV VP+
Sbjct: 252 EKVTVSAGVPT 262
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 67/281 (23%), Positives = 98/281 (34%), Gaps = 32/281 (11%)
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D D TY EL V AN L ++ GD +A +P AG
Sbjct: 51 DPLDRPET--WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG- 107
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP-LKAIVL 314
+ I +IA LR + AK + T L ++ KV L A P L+ +V
Sbjct: 108 IANPINPLLEPEQIAELLRAAGAKVLVT----LGPFPGTDIWQKVAEVLAALPELRTVVE 163
Query: 315 PAIGNDVGIPLREQDLSWK--------DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+ + P R + DF + + P +S D V + G
Sbjct: 164 VDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGG 223
Query: 367 TTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422
TTG PK T + + A W + L GD L V V + G
Sbjct: 224 TTGMPKLAQHTHGNEV---ANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280
Query: 423 ATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 458
A + L Y+G + +F K V+ + L VP++ A
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAA 321
|
Length = 632 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 65/289 (22%), Positives = 102/289 (35%), Gaps = 62/289 (21%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ VA L + +GD + + +P V+ +L G V + +
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S AK I TQ K+ G A + + I + L
Sbjct: 111 PAEIAKQAKASGAKLIITQS---------CYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161
Query: 329 DLSWKDF--LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
+L+ D L V+ P D VV + +SSGTTG PK + T + A
Sbjct: 162 ELTQADENELPEVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 209
Query: 387 EGWAHID-------LKVGDV----------YCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+ +D DV Y + +L GA + +
Sbjct: 210 Q---QVDGENPNLYFHSDDVILCVLPMFHIYSLNS---------VLLCGLRVGAAILIMP 257
Query: 430 ----GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474
G+ LE +Q VT+ VP +V A + +E D + IR
Sbjct: 258 KFEIGALLE-----LIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIR 301
|
Length = 537 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E +A L + +KG +AI MP ++ + A++ AGYVVV++ +
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323
RE+ +L+ S A+ I ++F +VL +K +V+ ++G+ +G
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFA-------TTVQQVLAKTAVKHVVVASMGDLLGF 157
|
Length = 557 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 66/277 (23%), Positives = 102/277 (36%), Gaps = 36/277 (12%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDV-YCWPT-NLGWVMG 411
D + L++SGTTG+PK + + AE +A + L+ GD + + +G
Sbjct: 91 DDIAYWLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 412 PVILFSSFLNGATLALYQGSPL-ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 470
+LF F GA+ L G P E + TVL VP+L +A + +
Sbjct: 150 NSLLFPLFS-GASAVLLPGWPTPEAVLDLLAR-HRPTVLFGVPALYRALLESGAGSAPLF 207
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFST 529
+R S GE + L I++ G TE+ +I P A +T
Sbjct: 208 RSVRLCVSAGE--ALPAGLAERWAEATGIEILDGIGSTEVLHIFISNR---PGAARPGTT 262
Query: 530 ATMTAG--LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGM 582
G ++DE G P G++ L P Y ++ +
Sbjct: 263 GRPVPGYEARLVDESGREVPAGTV--GDLWVRGPSLAPGYWNLPEKTQRTLRDGWL---- 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
R GD R G+ QGRADD + + G
Sbjct: 317 ---------RTGDRFSRDADGWYRYQGRADDMIKVSG 344
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 61/285 (21%), Positives = 96/285 (33%), Gaps = 63/285 (22%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG-----WVMGPVIL 415
++++SG+TG PK + + A L GD + W +
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWE-----I 152
Query: 416 FSSFLNGATLALY----QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
F L+GATL L P + +++ +TVL VPSL++A + L
Sbjct: 153 FPPLLSGATLVLAPPEVLRDPEA--LAELLREHRITVLHLVPSLLRALLDALEPAAL--P 208
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAFG 525
+R GE E G L +AY + + +
Sbjct: 209 SLRLVIVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDP-D 258
Query: 526 AFSTATMTAG-------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHE 575
++ G + +LDE P P P +G G+ YL + L A+
Sbjct: 259 DLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPE--LTAER- 315
Query: 576 EVYF-------RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
F G +Y R GD+ + G + GRADD
Sbjct: 316 ---FVPDPFGGPGERLY------RTGDLARWLPDGNLEFLGRADD 351
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 71/284 (25%), Positives = 109/284 (38%), Gaps = 38/284 (13%)
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 408
V + D + + F+SGTTG PK + T T W +DL+ D++ + GW
Sbjct: 77 VTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGW 133
Query: 409 VMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 465
G LF+ +L GA + +Y G ER+ ++ GVT P+ + + L
Sbjct: 134 AKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLEL-LERYGVTTFCAPPTAYRMLLQQD-L 191
Query: 466 EGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D++ +R S GE N + D W A I + G TE + +
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWR--AATGLPIRDGYGQTE-TGLLVANFPGMEVKP 248
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHE 575
G+ + I+D+ G P + G++ GLF YL + +
Sbjct: 249 GSMGRPAPGYRVAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLK------DPEKT 300
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
E RG Y GD + GY GRADD + G
Sbjct: 301 EATIRG-DWY------LTGDRAIKDEDGYFWFVGRADDVIKSSG 337
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 61/288 (21%), Positives = 97/288 (33%), Gaps = 83/288 (28%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ A++ +TY EL + +A AL + GD +A+ MP ++
Sbjct: 2 DATAVIDGAGT--------LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVA 53
Query: 250 YLAIILAGYVVVSI-ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP 308
L I+LAG V I D A R A L + A+ + T
Sbjct: 54 VLGILLAGAAYVPIDPDQPAER-RAAILARAGARAVLTDP------------------GL 94
Query: 309 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368
+ P + D + P D + ++F+SG+T
Sbjct: 95 AQPEEAPDLLVVA-------DDAAAA---------ESPAPPPPRVDPDDLAYVIFTSGST 138
Query: 369 GEPKAIPWTQ---LSSIRCTAEGWA-------------HIDLKVGDVYCWPTNLGWVMGP 412
GEPK + T +++I + H DL V D++
Sbjct: 139 GEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFG----------- 187
Query: 413 VILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLV 456
S+ GA L L R + + VQ GVTV +VP+L+
Sbjct: 188 --ALSA---GAALVL--PDEARRRDPDHWAELVQRHGVTVWNSVPALM 228
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 41/205 (20%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+EL E+ +A L KGD + + M + + VI Y AI+ A VVV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 269 AREIATRLRVSKAK-GIFTQDFILRGGRKFPLYSKVL---GAAPLK-AIV------LPAI 317
E+A + S A+ I + L KV G L+ IV LPA
Sbjct: 97 EEELAHYVTDSGARVAIVGSE----------LAPKVAPAVGNLRLRHVIVAQYSDYLPAE 146
Query: 318 GND-------VGIPLR----EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
PL+ ++WK+ L++ P P+ P D + + ++SG
Sbjct: 147 PEIAVPAWLRAEPPLQALAPGGVVAWKEALAA-GLAPPPHTAGP-----DDLAVLPYTSG 200
Query: 367 TTGEPKAIPWTQLSSIRCTAEGWAH 391
TTG PK T ++ A G
Sbjct: 201 TTGVPKGCMHTH-RTVMANAVGSVL 224
|
Length = 546 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 91/434 (20%), Positives = 159/434 (36%), Gaps = 69/434 (15%)
Query: 211 TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+++EL AN L +GD +A+ +P ++ +A I G V +
Sbjct: 43 SFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A++I RL+ SKAK I T D + A + +I + L
Sbjct: 103 AKDILYRLQASKAKCIVTSDEL---------------APAVDSIASEC--PSLKTKLLVS 145
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN----ILFSSGTTGEPKAIPWTQLS-SIR 383
+ S +L ++ S + V I F+SGTTG PK + S +
Sbjct: 146 EHSRDGWL---NFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLG 202
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFV 441
G +DL D+ ++ GW+ + LFS ++ GA + ++ + + + +
Sbjct: 203 LKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTL 262
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-- 499
+T + P++ + + L + +R + GE N + + W
Sbjct: 263 SKYPITTFCSAPTVYRMLVQQD-LTSYKFKSLRHCVTGGEPLNPEV-----LEQWKAQTG 316
Query: 500 --IIESCGGTE--LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555
+ E G TE L A +G ++P G+ A+ + I+D+ G P G+
Sbjct: 317 LDLYEGYGQTETGLICANFKGMKIKP---GSMGKASPPYDVQIIDDNGNVLPPGTE--GD 371
Query: 556 VG----------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
+G LF Y+ ++ + Y GD GY
Sbjct: 372 IGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYIT-------------GDRGIMDEDGYF 418
Query: 606 IVQGRADDTMNLGG 619
GRADD +N G
Sbjct: 419 WFVGRADDVINSSG 432
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 96/422 (22%), Positives = 161/422 (38%), Gaps = 48/422 (11%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL QV + AL + + + + + M V I +L I AG V V++
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 327
A + A L S+A+ +F +L P+ LG +P L+ V+ E
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVG-----RPEAGE 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
L+ + L++ + P D L+SSG+TG PK + T S+ TAE
Sbjct: 140 VQLA--ELLAT-----ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTH-SNPYWTAE 191
Query: 388 GWAH--IDLKVGDVYCWPTNL--GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+A + ++ DV L + +G + F + GAT L P + ++
Sbjct: 192 LYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSV-GATTVLMGERPTPDAVFDRLRR 250
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIE 502
T+ VP+L A L D ++R S GE + ++ +A + I++
Sbjct: 251 HQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEA--LPAEVGQRWQARFGVDIVD 308
Query: 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFP 560
G TE+ ++ P ++ G L ++ + G GE G
Sbjct: 309 GIGSTEMLHIFLSN---LPGDVRYGTSGKPVPGYRLRLVGDGGQDVAA-----GEPGELL 360
Query: 561 LYLGASDRLL--NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ +S + N F+G R GD R G GR DD + +
Sbjct: 361 ISGPSSATMYWNNRAKTRDTFQGE-------WTRSGDKYVRNDDGSYTYAGRTDDMLKVS 413
Query: 619 GI 620
GI
Sbjct: 414 GI 415
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 61/238 (25%), Positives = 87/238 (36%), Gaps = 50/238 (21%)
Query: 211 TYKELREQVMLVAN-ALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY L +AN L GD +A +P IIYLA + G V V + S+
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 270 REIATRLRVSKAKGIFT---------QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
E+ L +AK F D IL + P +++G L PA
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA----PAT--- 163
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPW 376
LS ++ Y P+ + D + +LF+SGT G PK +
Sbjct: 164 -------SSLSLSQIIAD---------YEPLTTAITTHGDELAAVLFTSGTEGLPKGVML 207
Query: 377 TQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431
T L+S R ++L DV+ P LG G FL+G T G+
Sbjct: 208 THNNILASERAYCAR---LNLTWQDVFMMPAPLGHATG-------FLHGVTAPFLIGA 255
|
Length = 547 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 57/276 (20%), Positives = 104/276 (37%), Gaps = 33/276 (11%)
Query: 209 LMTYKELREQVMLVANAL--DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
MTYK+L E V VA L + KG+ IAI ++ +++ AI + V +
Sbjct: 27 EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIR 86
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326
E+ +L+ S +F + + + + + V I
Sbjct: 87 LTENELIFQLKDSGTTVLFVE----------KTFQNMALSMQKVSYVQRVI--------- 127
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
L ++ N+ A I ++SGTTG+PK TQ +
Sbjct: 128 -----SITSLKEIEDRKIDNFVEK---NESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFS--SFLNGATLALYQGSPLERSFGKFVQDA 444
IDL + D L + +G + LF+ + G + + + ++ ++
Sbjct: 180 NNTFAIDLTMHDRSIVLLPL-FHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL-SMIEKH 237
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
VTV+ VP++ +A N + E + +R F + G
Sbjct: 238 KVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGG 273
|
Length = 496 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ EL+E+ AN L D +GD +A+ +P + L I G V +
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 270 REIATRLRVSKAKGIFTQD 288
++I RL + A+ I T
Sbjct: 62 KDIRYRLERAGARAIVTSA 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 74/317 (23%), Positives = 99/317 (31%), Gaps = 106/317 (33%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-------- 402
D V S G+TG PK IP T S+R + E CW
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE------------ICWLTQQTRYL 227
Query: 403 ---PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
P + + F G + L F ++ VTV VP V
Sbjct: 228 CALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF-PLIERHKVTVTALVPPAVA-- 284
Query: 460 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYI 514
LW+ + + A + S GG + S+A
Sbjct: 285 -----------------------------LWMQAASKSRADLSSLKLLQVGGAKFSAAAA 315
Query: 515 Q------GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEV 556
+ G LQ Q FG M GLV I G P PDD+ V +
Sbjct: 316 RRVPAVFGCQLQ-QVFG------MAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDD 368
Query: 557 GLFPLYLGASDRLL------------NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
P+ G + LL +H F Y GD+++ T GY
Sbjct: 369 HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY------YTGDLVRLTPEGY 422
Query: 605 IIVQGRADDTMNLGGIK 621
I+V GRA D +N GG K
Sbjct: 423 IVVVGRAKDQINRGGEK 439
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T+++L + V +A L + GD + I P ++ A G ++V+I ++
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----------------LKA 311
A E+ L S + + D + ++ + P L+
Sbjct: 106 ASELEYALGQSGVRWVICAD----AFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
+V A G + + + +S R D +NI ++SGTTG P
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDR-----DDPINIQYTSGTTGFP 216
Query: 372 KA 373
K
Sbjct: 217 KG 218
|
Length = 558 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 58/228 (25%), Positives = 82/228 (35%), Gaps = 54/228 (23%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL----GWVM 410
D I ++SGTTG PK T + + A L GD P L G V+
Sbjct: 2 DDPALIQYTSGTTGRPKGAMLTHRNVLN-NGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 411 GPVILFSSFLNGATLALYQGSPLERSFGKF--------VQDAGVTVLGTVPSLVKAWRNT 462
G + +S GATL L + KF ++ +T L VP++ A
Sbjct: 61 G---VLASLTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIA---- 104
Query: 463 NCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQ 515
LE D+ K +R+ S G + V +L + + I G TE S Q
Sbjct: 105 -LLEHPDFDKFDLSSLRTGISGG--APVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ 161
Query: 516 GSLLQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV 556
S P + T G I+D G P + VGE+
Sbjct: 162 TSGDDP-----YEDRPGTVGRPLPGVEVKIVDPDGGEVPPGE--VGEI 202
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 35/260 (13%)
Query: 151 PKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLM 210
+ R SK G W ++ + + + D +R+ AV
Sbjct: 3 AVLLAPRRAASKAAGLWRDRTINDHFDAAV-----ANCPDKPALTAYRDG---HGAVRRF 54
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+Y+EL +V +A L + +GD ++ +P +YLA G V+ + F
Sbjct: 55 SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGI----- 323
RE++ L + +K +F + RG + ++ P L+ +V+ D
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLM 173
Query: 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---L 379
P R+ L+ PRP SP D V ++++SGTTGEPK + T
Sbjct: 174 TPERDDTPDAAAILAG----PRP---SP-----DDVTQLIYTSGTTGEPKGVMHTANTLF 221
Query: 380 SSIRCTAEGWAHIDLKVGDV 399
S+I AE ++L GDV
Sbjct: 222 SNIHPYAE---RLELGGGDV 238
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 115/622 (18%), Positives = 194/622 (31%), Gaps = 88/622 (14%)
Query: 26 FDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLY 85
F +L QV + G A + + L+P H ++ +YN L
Sbjct: 2903 FRDLLGQVKEQALGAQAHQDLPFEQLVEALQPERSLS-HSPLFQVMYNHQSGERAAAQL- 2960
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR----LFQKFTVEHPEAYWEIALK 141
P L G A + + + S LF TVE +W+ L+
Sbjct: 2961 --PGLHIESFAWDGAATQFDLALDTWESAEGLGASLTYATDLFDARTVERLARHWQNLLR 3018
Query: 142 EISVVFREAPKCI-----LDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKED------ 190
+ + + LD ++ + W + E + HR E+
Sbjct: 3019 GMV---ENPQRSVDELAMLDAEERGQLLEAWNATAAEYPLERGV----HRLFEEQVERTP 3071
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ VA+ + E R ++Y EL + +A+ L D + + + ++ V+
Sbjct: 3072 DAVALAFGEQR--------LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVG 3123
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LAI+ AG V + + +A L S A+ + +Q + + PL V
Sbjct: 3124 LLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-----RLPLAQGV------ 3172
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
Q L + P + + ++++SG+TG
Sbjct: 3173 ------------------QVLDLDRGDENYAEANPAIRTMP-----ENLAYVIYTSGSTG 3209
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+PK + + L VGD T + + LF ++GA + L
Sbjct: 3210 KPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL-A 3268
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL-DWTKIRSFASTGETSNVD-D 487
G R V+ + + + + E T ++ GE D
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQ 3328
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLVILDECGVPY 546
+ YN G TE + ++ ILD P
Sbjct: 3329 QQVFAGLPLYNLY----GPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPV 3384
Query: 547 PDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
P VG +G LYLG A F P G L R GD+ +
Sbjct: 3385 P-----VGALG--ELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 603 GYIIVQGRADDTMNLGGIKALL 624
G I GR D + + G + L
Sbjct: 3438 GVIEYIGRVDHQVKIRGFRIEL 3459
|
Length = 5163 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T++EL ++V +A AL GD + I M V LA + G + V +
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + A + T+ + P+ + V PL + V+ A G +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVA-----GGSSDDS 151
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
L ++D L+ +PV P D+ I+++SGTTG PK
Sbjct: 152 VLGYEDLLAEAGPAH-----APVDIPNDSPALIMYTSGTTGRPK 190
|
Length = 542 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 32/200 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA---D 265
+TY EL EQ +A L + GD +A+ + R + LA+ AG V I
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAV-LARNHRGFV--LALYAAGKVGARIILLNT 131
Query: 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325
F+ ++A K + D ++ +L A P L A G +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD----------EFTDLLSALPPDLGRLRAWGGNP-DDD 180
Query: 326 REQDLSWKDFLSSVDYH-----PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS 380
+ + + P+P + ++ +SGTTG PK P + S
Sbjct: 181 EPSGSTDETLDDLIAGSSTAPLPKPPKPGGI---------VILTSGTTGTPKGAPRPEPS 231
Query: 381 SIRCTAEGWAHIDLKVGDVY 400
+ A + + + G+
Sbjct: 232 PLAPLAGLLSRVPFRAGETT 251
|
Length = 549 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
D S ++Y EL+ V +A L + +GD + + +P +V +I+LA++ G +V
Sbjct: 60 DSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV 119
Query: 261 VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
++ S + EI R+ FT P + L + I +P +
Sbjct: 120 TTMNPSSSLGEIKKRVVDCSVGLAFTS----------PENVEKLSPLGVPVIGVPENYDF 169
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
+ D+ P+P + D V I++SSGTTG K + T
Sbjct: 170 DSKRIEFPKFYEL-IKEDFDFVPKP----VIKQ--DDVAAIMYSSGTTGASKGVVLT 219
|
Length = 560 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 64/267 (23%), Positives = 98/267 (36%), Gaps = 46/267 (17%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVV--VSIADS 266
+TY E + V +A AL D G + I ++ ++ LA + AG VS A S
Sbjct: 81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA----IVLPAIG 318
+ + A +L+ + K + +F Q +++ L A L V
Sbjct: 141 LMSHDHA-KLKHLFDLVKPRVVFAQSG--------APFARALAALDLLDVTVVHVTGPGE 191
Query: 319 NDVGIPLREQDLSWKDFLSSVDY-HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
I DL+ ++V D V LF+SG+TG PKA+ T
Sbjct: 192 GIASIAFA--DLAATPPTAAVAAAIAAITP--------DTVAKYLFTSGSTGMPKAVINT 241
Query: 378 Q--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFL-NGATLALYQ 429
Q + + E P +L W MG F+ L G TL +
Sbjct: 242 QRMMCANIAMQEQ-LRPREPDPPP---PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297
Query: 430 GSPLERSFGKFVQ---DAGVTVLGTVP 453
G PL F + ++ + TV G VP
Sbjct: 298 GKPLPGMFEETIRNLREISPTVYGNVP 324
|
Length = 624 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 34/173 (19%)
Query: 210 MTYKELREQVMLVANALDTMF-----SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
+TY EL + +N L +GD +AI + +Y A +G I
Sbjct: 12 VTYGELEAR----SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPIN 67
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324
A EIA + S AK + +++ P +L + V
Sbjct: 68 WHLTAAEIAYIVDDSGAKVLIVS------AALADTAAELAAELPAGVPLLLVVAGPVP-- 119
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV---NILFSSGTTGEPKAI 374
++ + ++ P P+ ++L+SSGTTG PK I
Sbjct: 120 ------GFRSYEEALAAQPDT--------PIADETAGADMLYSSGTTGRPKGI 158
|
Length = 502 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 70/307 (22%), Positives = 121/307 (39%), Gaps = 43/307 (14%)
Query: 156 DRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKEL 215
R S G W ++ + + C+ D T R A TY+EL
Sbjct: 10 PRRAASIAAGHWHDRTINDDLDACV-----ASCPDKTAVTAVRLGT---GAPRRFTYREL 61
Query: 216 REQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274
V VA L + +GD ++ +P ++YLA G V+ + F RE++
Sbjct: 62 AALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF 121
Query: 275 RLRVSKAKG-IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWK 333
L+ +++K + + F R F + P LPA+ + V + + S++
Sbjct: 122 MLKHAESKVLVVPKTF-----RGFDHAAMARRLRPE----LPALRHVVVVG-GDGADSFE 171
Query: 334 DFLSSVDYHPRPNYYSPVYNP---VDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAE 387
L + + P+ + + D V ++++SGTTGEPK + T +++I AE
Sbjct: 172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE 231
Query: 388 GWAHIDLKVGDVYCWPTNLGWVMG-------PVILFSSFLNGATLALYQGSPLERSFGKF 440
+ L DV + + G PV+L GAT A+ Q +
Sbjct: 232 ---RLGLGADDVILMASPMAHQTGFMYGLMMPVML------GAT-AVLQDIWDPARAAEL 281
Query: 441 VQDAGVT 447
++ GVT
Sbjct: 282 IRTEGVT 288
|
Length = 547 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 30/191 (15%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
VA+V + R +TY EL E+ +A+ L GD + I + V L
Sbjct: 20 VALVCGDRR--------LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAML 71
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF-PLYSKVLGAAP-L 309
A V V++ + E+ L S A + + R+F P ++VL P L
Sbjct: 72 GAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYE-------REFAPRVAEVLPRLPKL 124
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP--VYNPVDAVVNILFSSGT 367
+ +V + + G L + ++D L++ SP +Y +L++ GT
Sbjct: 125 RTLV--VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY--------LLYTGGT 174
Query: 368 TGEPKAIPWTQ 378
TG PK + W Q
Sbjct: 175 TGMPKGVMWRQ 185
|
Length = 533 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ ++ +Q +A AL ++ GD IAI +I LAI +AG+V V + + A
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---LPAIGNDVGIPLR 326
I L S AK +F K+ +KA V LP I L+
Sbjct: 68 ETIRYVLEHSDAKALFV--------------GKLDDWDAMKAGVPEGLPTIILFPYSTLK 113
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
+ W D L++ P P+ P + + I+++SGTTG+PK
Sbjct: 114 DHY-KWDDLLAA----TEPLQGRPLPEP-EDLATIVYTSGTTGQPK 153
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 70/352 (19%), Positives = 122/352 (34%), Gaps = 85/352 (24%)
Query: 185 HRRKED------NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IA 237
H+ ED VA+V+ E +TY EL + +A+ L + + +
Sbjct: 1577 HQLIEDQAAATPEAVALVFGEQE--------LTYGELNRRANRLAHRLIALGVGPEVLVG 1628
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I + ++ V+ LAI+ AG V + + +A + S + + TQ + +
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQA---RL 1685
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP-VD 356
PL L+++VL +Q+ W ++ + N P N
Sbjct: 1686 PL------PDGLRSLVL------------DQEDDW------LEGYSDSN---PAVNLAPQ 1718
Query: 357 AVVNILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405
+ ++++SG+TG PK + TQ + A+ DV W
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWE-- 1776
Query: 406 LGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVKAW--- 459
LF +NGA L + R + +Q VT L VPS+++
Sbjct: 1777 ---------LFWPLINGARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826
Query: 460 --RNTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTE 508
+ + +R GE V+ WL + G TE
Sbjct: 1827 DEQVEHP------LSLRRVVCGGEALEVEALRPWLERLPD-TGLFNLYGPTE 1871
|
Length = 3956 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTMFSK--GDAIAIDMPMTVRAVIIYLAIILAGYV 259
C + + ++Y ++R+ V+ AL T SK I I MP + A I Y A +L+G +
Sbjct: 38 CWDEQLGKLSYNQVRKAVI----ALATKVSKYPDQHIGIMMPASAGAYIAYFATLLSGKI 93
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPA 316
V I S RE+ + + T +++ + G P I +
Sbjct: 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA------QTHGEDAEYPFSLIYMEE 147
Query: 317 IGNDVGIPLREQDLSWKD-----FLSSVDYHPRPNYY-SPVYNPVDAVVNILFSSGTTGE 370
+ ++LS+ + S+ + ++ +P D V ILF+SGT
Sbjct: 148 V---------RKELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAV-ILFTSGTEKL 197
Query: 371 PKAIPWTQLSSI 382
PK +P T + +
Sbjct: 198 PKGVPLTHANLL 209
|
Length = 539 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 55/245 (22%), Positives = 86/245 (35%), Gaps = 50/245 (20%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
D IL++SGTTG PK + T + + A +DL GDVY L + P L
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVY-----L--LAAP--L 51
Query: 416 FSSFLNGATL-ALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLEG 467
+ + L AL G L F ++ VT VP++ +
Sbjct: 52 YHAAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFAR 111
Query: 468 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAF-- 524
D + +R + + +L + W+ + + G TE +LL P+ +
Sbjct: 112 YDLSSLRLIIYGA--APMPAELKRAMIEWFGPVFVQGYGMTETGPT---TTLLSPEDWLR 166
Query: 525 --GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM 582
G+ + I+DE G P GEVG E+ RG
Sbjct: 167 KLGSVGRPVPGVEVRIVDEDGRELP-----PGEVG------------------EIVVRGP 203
Query: 583 PMYKG 587
+ G
Sbjct: 204 AVMAG 208
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244
T I E V +Y EL E++ AN ++ KGD +A+ +
Sbjct: 18 DVYGHKTALIF--ESS--GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCP 73
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+ + + G ++V I E A L+ S+A + T P+Y ++
Sbjct: 74 EFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQ 127
Query: 305 --GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
A PL+ I L + D F P Y+P + D IL
Sbjct: 128 QEDATPLRHICLTRVALP-------ADDGVSSFTQLKAQQPATLCYAPPLS-TDDTAEIL 179
Query: 363 FSSGTTGEPKAI 374
F+SGTT PK +
Sbjct: 180 FTSGTTSRPKGV 191
|
Length = 517 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 96/419 (22%), Positives = 146/419 (34%), Gaps = 76/419 (18%)
Query: 233 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
GD +A+ M V+ LA A VVV + + E R + + A+ + D
Sbjct: 68 GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI-DADGP 126
Query: 293 GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV- 351
R P PL V G G D P P +P
Sbjct: 127 HDRAEPTTR----WWPLTVNVGGDSGPSGGTLSVHLD---------AATEPTPATSTPEG 173
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD--VYCWPTNL 406
P DA+ I+F+ GTTG PK +PWT SS+R G+ L D V P
Sbjct: 174 LRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY---RLSPRDATVAVMPLYH 228
Query: 407 GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + GA L +G +F ++ G T VP++ + E
Sbjct: 229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE 288
Query: 467 GLDWTK-----IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519
IRS ++ T ET+ + + ++ + G TE A Q +
Sbjct: 289 PSGRKPAALRFIRSCSAPLTAETAQALQTEFAA------PVVCAFGMTE---ATHQVTTT 339
Query: 520 QPQAFGAFSTATMTAGLVILD---ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHE 575
Q + G ++ GLV + + D P G VG
Sbjct: 340 QIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVG------------------ 381
Query: 576 EVYFRGMPMYKGMC-------------LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
EV+ RG + +G R GD+ + G + ++GR + +N GG K
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEK 440
|
Length = 534 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL + +A AL GD +A+ P + V++YLAI AG V V + S+ A
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72
Query: 270 REIA 273
E+A
Sbjct: 73 AELA 76
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 60/273 (21%), Positives = 95/273 (34%), Gaps = 28/273 (10%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
I+++SG+TGEPK + + + +++L D + G L ++F
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
G TL L R K + +T VP+ + L D+ +R + G
Sbjct: 67 VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQGSLL--QPQAFGAFSTATMTAGLV 537
L L + G TE S Y+ L +P + G A L
Sbjct: 127 GALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---KAIPNVELW 183
Query: 538 ILDECGVPYPDDQPC-VGEVGLF----PL----YLGASDRLLNADHEEVYFRGMPMYKGM 588
++DE D C GEVG Y + E R P+ +
Sbjct: 184 VVDE------DGNRCAPGEVGELVHRGANVMKGYWNDPEAT-----AER-LRPGPLPGEI 231
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
L GD+++ GY+ GR DD + G +
Sbjct: 232 VLYT-GDLVRMDEEGYLYFVGRKDDMIKTRGYR 263
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 25/166 (15%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY ELR +V VA L +A+ P +V AVI LA+ G V +
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + I RG + + V+ A V+ AI G +R
Sbjct: 89 PAEIA--------------ELIKRG----EMTAAVIAVD---AQVMDAI-FQSGSGVRVL 126
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
L L P P P + ++SGTTG PK
Sbjct: 127 ALGDLVGL-GEPESAGPPIEDPPREPEQPAF-VFYTSGTTGLPKGA 170
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY E+ A AL ++ KG + + +P I+ L I+ AG V +
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
EI + + AK I T D Y KV G L IVL E
Sbjct: 117 SEIKKQAEAAGAKLIVTNDT---------NYGKVKGLG-LPVIVLGEEKI-------EGA 159
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 378
++WK+ L + D + + + + FSSGTTG K + T
Sbjct: 160 VNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGVMLTH 206
|
Length = 546 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 63/277 (22%), Positives = 106/277 (38%), Gaps = 41/277 (14%)
Query: 361 ILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
++++SGTTG PK +P +L + + GDV+ P + W+
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELY--------FEL-APRPGDVFWTPADWAWI 143
Query: 410 MGPV-ILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + G + Y+ ER+F ++ GVT P+ +K R
Sbjct: 144 GGLLDVLLPALYFGVPVVAYRMQRFDPERAF-ALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 526
++R+ AS GE+ + W + + E G TE + + L P G+
Sbjct: 203 ARYDLRLRAVASGGESLGEELLEW-ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGS 261
Query: 527 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL----NADHEEVYFRGM 582
+ ++D+ G P P GEVG + L N + F G
Sbjct: 262 MGKPVPGHEVAVVDDAGRPVP-----PGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ GD+ +R GY+ +GRADD + G
Sbjct: 317 WL-------LTGDLGRRDADGYLWFKGRADDVIKSSG 346
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVII 249
+ VA+V+ + +TY+EL E+ +A+ L GD +AI + + V+
Sbjct: 2 DAVAVVFGDQS--------LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVA 53
Query: 250 YLAIILAG--YVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
LA++ AG YV + A A R +A L S AK + T
Sbjct: 54 ILAVLKAGAAYVPLDPAYP-AER-LAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 65/291 (22%), Positives = 99/291 (34%), Gaps = 75/291 (25%)
Query: 366 GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLN 421
GTTG PK + + + A W L GDV L V G ++ +
Sbjct: 12 GTTGAPKLARHSHRNEV---ANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLAR 68
Query: 422 GATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
GAT+ L ++ + +F K V+ VT+L VP+++ A L D + +R +
Sbjct: 69 GATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVP-LGDADISSLR-Y 126
Query: 477 ASTGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT 533
A TG V + ++E G TE + S
Sbjct: 127 ALTGAAPLPVEVARRFEAVTGV---PVVEGYGMTEGTGV---------------SAINPR 168
Query: 534 AGLVILDECGVPYP--------------DDQPC-VGEVG--------LFPLYLGASDRLL 570
G G+ P + C GEVG +FP YL +
Sbjct: 169 GGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAH--- 225
Query: 571 NADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
NA E+ + GD+ + GY+ + GRA D + GG
Sbjct: 226 NAGARLEDGWLNT------------GDLGRIDADGYLWLTGRAKDLIIRGG 264
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E E+V +A AL S + I ++ ++ LA + AG Y VS A S
Sbjct: 70 LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ +LR + +F D +++ L A + + A+ V
Sbjct: 130 LVSQDFG-KLRHVLELLTPGLVFADDG--------AAFARALAAVVPADVEVVAVRGAVP 180
Query: 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
+ L++ P + V D + LF+SG+TG PKA+ T
Sbjct: 181 GR---AATPFAALLAT----PPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231
|
Length = 614 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 45/270 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E QV +A AL + S + I ++ ++ LA + AG VS A S
Sbjct: 26 VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ A +LR + +F +D +++ L A L + + A+ G
Sbjct: 86 LLSKDFA-KLRHIFDLLTPGAVFAEDG--------AAFARALAALGLAGVPVVAVRGAPG 136
Query: 323 IP--LREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
P L+ P + V D V LF+SG+TG PKA+ T
Sbjct: 137 GPAIAFAALLA----------TPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH 186
Query: 379 L---SSIRCTAEGWAHIDLKVGDVYCWPTNLGW--VMGPVILFSSFL-NGATLALYQGSP 432
++ A+ W + + + W L W G F+ L NG TL + G P
Sbjct: 187 RMLCANQAMIAQCWPFLTEEPPVLVDW---LPWNHTFGGNHNFNMVLYNGGTLYIDDGKP 243
Query: 433 LERSFGKFVQ---DAGVTVLGTVPSLVKAW 459
+ F + ++ + TV VP K +
Sbjct: 244 VPGLFEETLRNLREVSPTVYFNVP---KGF 270
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 82/369 (22%), Positives = 132/369 (35%), Gaps = 92/369 (24%)
Query: 304 LGAAPLKAIVLPA-----IGNDVGIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPV 355
L A+ L A++ A +G+D R F++S D P P
Sbjct: 81 LSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTP------SIPP 134
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
+ V ILF+SGT+G+PK + ++ +++ TA N G V+G V
Sbjct: 135 ERVSLILFTSGTSGQPKGVMLSE-RNLQQTA-----------------HNFG-VLGRVDA 175
Query: 416 FSSFL--------------------NGATLALYQGSPLERSFGKFV-QDAGVTVLGTVPS 454
SSFL G ++ + G +R+ G+ G+T VP
Sbjct: 176 HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQ 235
Query: 455 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA-- 512
+ +A+R + + + + G +D L W + I G +S A
Sbjct: 236 MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILG-----WLDDGIPMVDGFGMSEAGT 290
Query: 513 ----YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYL 563
+ +++ +A GA T T ++D+ G P P GE+ L P Y
Sbjct: 291 VFGMSVDCDVIRAKA-GAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYW 347
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG---- 619
A + +FR GDI +R G+ V R D GG
Sbjct: 348 RRPQATARAFTGDGWFRT------------GDIARRDADGFFWVVDRKKDMFISGGENVY 395
Query: 620 ---IKALLL 625
I+A+L
Sbjct: 396 PAEIEAVLA 404
|
Length = 488 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E+V +A L + GD +A+ + + + A+ G V V I +
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 270 REIATRLRVSKAKGIFT 286
E+A L S A+ I
Sbjct: 65 EELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 45/193 (23%), Positives = 75/193 (38%), Gaps = 43/193 (22%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY EL +QV A L + GD +AI +P + ++ + A++ G VVV +
Sbjct: 58 TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT 117
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV-------LPAIGN-D 320
A E+ A+ D + P ++ PL+ IV +P +
Sbjct: 118 AHELEHPFEDHGARVAIVWD------KVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171
Query: 321 VGIPL------REQ-------DLSWKDFLSS-------VDYHPRPNYYSPVYNPVDAVVN 360
+ +P+ R + W+ + + HPRP A+
Sbjct: 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDV------AL-- 223
Query: 361 ILFSSGTTGEPKA 373
IL++SGTTG+PK
Sbjct: 224 ILYTSGTTGKPKG 236
|
Length = 573 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E V +A L + KGD +A+ M + + VI Y AI+ AG VVV +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+ L S A+ +
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 47/190 (24%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+ + + A + ++ +TY +L+E +A +D++ I + M+
Sbjct: 13 QTQPDFPAYDYLGEK--------LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPE 64
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---K 302
+ +L + AG+ + + S A I + V+K I + + PL
Sbjct: 65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE-------ELPLEILGIP 117
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ LK I D ++ D NYY I+
Sbjct: 118 VITLDELKDIFATGNPYDFDHAVKGDD----------------NYY------------II 149
Query: 363 FSSGTTGEPK 372
F+SGTTG+PK
Sbjct: 150 FTSGTTGKPK 159
|
Length = 503 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++ EL ++ A L + GD +A+ M A + G V + F
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRK-FPLYSKVLGAAPLKAIVLPAIG-NDVGIPLR 326
EIA L S A+ + +L G P VL + P + A + +
Sbjct: 72 PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
+ W+ +L+ + Y P PV +++++SGTTG PK +
Sbjct: 131 AGAIDWEGWLAQ-----QEPYDGP---PVPQPQSMIYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
L A+ + +K D +++ P T ++ A+ +AG V+ I A IA LR +K
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 281 AKGIFTQDFILRGGRKF-PLYSKVLGAAPLKAIVLPAIGNDVGIP---LREQDLSWKDFL 336
K +F R F PL +VL +L + +++ +P + E D +
Sbjct: 112 PKILFVD-------RSFEPLAREVLH-------LLSSEDSNLNLPVIFIHEIDFPKRPSS 157
Query: 337 SSVDY-------HPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
+DY P P+ + ++ D +++ ++SGTT +PK + + + T
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217
Query: 388 ---GWAHIDLKVGDVYCW 402
GW ++ VY W
Sbjct: 218 AIIGW---EMGTCPVYLW 232
|
Length = 579 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-------- 412
IL++SGTTG PK + T + + L+ DV P
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVL-------LTPLPLFHINAQA 138
Query: 413 VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKA 458
++++ L GATL L S F V+ G TV + ++
Sbjct: 139 YSVYAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAI 183
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 30/197 (15%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+E + +A++W +D +E + T+ +L++ AN + KGD + +T++
Sbjct: 28 DEEPDKLALIWCDDDGEEK---IFTFGDLKDYSNKAANFFKALGIGKGDTVM----LTLK 80
Query: 246 AVIIYLAIILA----GYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
+ +LA G + + A++I R+ + K I + G P +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMI-----VCIGEDGVPEH- 134
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD----YHPRPNYYSPVYNPVDA 357
+ AAP + VG P+ E W DF ++ RP D
Sbjct: 135 -IDEAAPECGSPTLLV--LVGDPVPE---GWIDFDKEIENASPDFERPT--GNDATCNDD 186
Query: 358 VVNILFSSGTTGEPKAI 374
++ + F+SGTTG PK +
Sbjct: 187 ILLVYFTSGTTGMPKMV 203
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 660 | |||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.97 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.92 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.87 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.63 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.37 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 99.31 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.1 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.99 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.16 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.65 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.55 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.46 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 94.74 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 92.85 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 81.51 |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-87 Score=762.59 Aligned_cols=654 Identities=59% Similarity=1.010 Sum_probs=546.2
Q ss_pred CCCcccccChHHHHHcCCCchhHHHHHHHHHHHhhhccCCChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCC
Q 006121 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK 80 (660)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~ 80 (660)
||||++++..+||.+.|+..++++.|.+.|++....+.. +-..++-.. ..+.|+|..+.++|++.++.+.-+|.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (728)
T PLN03052 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAGA-SPPSIWRRI-SQSLLTPSHPFALHQLMYYSCYKNWDSDTL 81 (728)
T ss_pred ccCChhhcCHHHHHHcCCChHHHHHHHHHHHHHHHhhcC-CchHHHHHH-HHHhcCCCCCccHHHHhhhhcccCCCcccc
Confidence 799999999999999999999999999999999988764 456667766 788999999999999877788778877665
Q ss_pred CCCcccCCChhhhcccchHHHHHHhCCcccccccCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCC
Q 006121 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK 160 (660)
Q Consensus 81 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 160 (660)
.+...|.|.++...+..+.-+++..+.......|...+.+|+.|++.+++++..||..+++.+.+.|.+++.++++..+.
T Consensus 82 ~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~ 161 (728)
T PLN03052 82 GPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDE 161 (728)
T ss_pred CCCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCCC
Confidence 66788999888777778777776654333223366667789999999999999999999999988999999999875333
Q ss_pred CCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEE
Q 006121 161 SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (660)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~ 239 (660)
..+..+|++++.+|.++++++++. +++|+++|+++.++..++++.+++||+||.++++++|++|++. +++||+|+++
T Consensus 162 ~~~~~~wf~g~~ln~~~~~l~~~~--~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~ 239 (728)
T PLN03052 162 SNPGGQWLPGAVLNVAECCLTPKP--SKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239 (728)
T ss_pred CCCCCEECCCCEeEHHHHHHHHHh--ccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 445678999999999999998754 5689999999987532234567899999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCC
Q 006121 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (660)
Q Consensus 240 ~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 319 (660)
++|++++++++|||+++|++++|++|.++++++.+++++++++++|+++.+.++++.++....+.......++++...+.
T Consensus 240 ~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~ 319 (728)
T PLN03052 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGK 319 (728)
T ss_pred eCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999998877788888777766655555555554322
Q ss_pred CCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCE
Q 006121 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (660)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~ 399 (660)
........+..+|++++........+.........+++++||+|||||||+||||+++|++++..+......++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~ 399 (728)
T PLN03052 320 SVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDI 399 (728)
T ss_pred ccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcE
Confidence 11111122356688776542210001112222335689999999999999999999999998877766666688999999
Q ss_pred EEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEee
Q 006121 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (660)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (660)
++++++++|+++.+.++.+|++|++++++++.+++..+++++++++||++.++|++++.|.+.......++++||.+++|
T Consensus 400 ~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~ 479 (728)
T PLN03052 400 VCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479 (728)
T ss_pred EEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEec
Confidence 99999999999998889999999999999877777889999999999999999999999988765556789999999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~ 559 (660)
||+++++...++...++..+++|.||+||+++++.......+...+++|+|++|++++|+|++|+++|.|++++|||++.
T Consensus 480 Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~ 559 (728)
T PLN03052 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALF 559 (728)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEe
Confidence 99999999888887765567999999999987555444444556678999999999999999999999997556999998
Q ss_pred ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhc-CCCCce
Q 006121 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSS-PRSSFK 638 (660)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~-~~~~V~ 638 (660)
+.+++...+|++++.+..||..+|+.++++||+|||+|++|+||+++|+||.||+||++|+||++.|||++|. .||+|.
T Consensus 560 ~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~ 639 (728)
T PLN03052 560 PLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVL 639 (728)
T ss_pred CCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcc
Confidence 7777766677788888889988888888899999999999999999999999999999999999999999995 899999
Q ss_pred eeEEEEEeecC-c-ceeeeecc
Q 006121 639 CLHIYAWLYFH-K-LELIFYFS 658 (660)
Q Consensus 639 ~a~vv~~~~~~-~-~~l~a~~~ 658 (660)
+++||...+.. + ..+++|+.
T Consensus 640 eaaVvg~~d~~~g~e~~~afVv 661 (728)
T PLN03052 640 ETAAIGVPPPGGGPEQLVIAAV 661 (728)
T ss_pred eEEEEeeecCCCCcEEEEEEEE
Confidence 99999887653 3 56888864
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=832.05 Aligned_cols=589 Identities=18% Similarity=0.184 Sum_probs=484.0
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC-----Cccc--C
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PLYW--F 87 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~-----~~~~--~ 87 (660)
+.++++++.+|.++|++++.+..++ +||++||++ |++.|+++|+ .++.||||+||++|+..... .... .
T Consensus 1409 lR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~-i~~~l~~~r~--~~~~pLFq~~~~~~~~~~~~~~~~~~~~~~~~ 1485 (3956)
T PRK12467 1409 LRAEVDGQASFQQLLQQVKQAALEAQAHQDLPFEQ-LVEALQPERS--LSHSPLFQVMFNHQRDDHQAQAQLPGLSVESL 1485 (3956)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHHhccccc--CCCCCceeEEEEeecccccccccCCCceeEee
Confidence 4456677788999999999998887 999999999 9999999988 45556799999999854322 1111 1
Q ss_pred CChhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCCCCC
Q 006121 88 PSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHG 164 (660)
Q Consensus 88 ~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~ 164 (660)
......++|||++.+.+.++++.+.+ |++ ++|++.++++|.++|.++|+++..+++.+..++ +...+.....
T Consensus 1486 ~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~~~~~ 1560 (3956)
T PRK12467 1486 SWESQTAQFDLTLDTYESSEGLQASLTYAT-----DLFEASTIERLAGHWLNLLQGLVADPERRLGELDLLDEAERRQIL 1560 (3956)
T ss_pred ecCCcccccceEEEEEecCCeEEEEEEEeC-----CcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccccchHHhhhhH
Confidence 12245688999999988888899999 999 999999999999999999999988887776664 4444433344
Q ss_pred CCcCCCCccchhhhcccc--cCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcC
Q 006121 165 GTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~ 241 (660)
..|+.+........+++. ..+++++|+++|+++.++ ++||+||+++++++|++|++. +++|++|+|+++
T Consensus 1561 ~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~ 1632 (3956)
T PRK12467 1561 EGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQ--------ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVE 1632 (3956)
T ss_pred HhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCc--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcc
Confidence 557755443332233332 345689999999999887 999999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCC
Q 006121 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321 (660)
Q Consensus 242 ~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 321 (660)
||+++++++|||+|+|++|+||||.+|.+|+.+++++++++++|++...... +........+.+...
T Consensus 1633 ~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~---- 1699 (3956)
T PRK12467 1633 RSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQAR---------LPLPDGLRSLVLDQE---- 1699 (3956)
T ss_pred CCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhh---------CccccCCcEEEeccc----
Confidence 9999999999999999999999999999999999999999999998753211 100011112222110
Q ss_pred CCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEE
Q 006121 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (660)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l 401 (660)
.++..... ...+.....++++|||+|||||||+||||+++|+++++.+.+....++++++++++
T Consensus 1700 -----------~~~~~~~~-----~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l 1763 (3956)
T PRK12467 1700 -----------DDWLEGYS-----DSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVL 1763 (3956)
T ss_pred -----------cchhccCC-----CCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEE
Confidence 00111110 11122345679999999999999999999999999999999998999999999999
Q ss_pred EecCccccchhhHHHHhhhcCcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEee
Q 006121 402 WPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (660)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (660)
+++|++||++++++|.+|++|+++++.+.. .++..+++.|++++||++.++|++++.|.+... ....+++||.+++|
T Consensus 1764 ~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~g 1842 (3956)
T PRK12467 1764 QFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCG 1842 (3956)
T ss_pred EecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEc
Confidence 999999999999999999999999998743 478899999999999999999999999987422 23457899999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeE
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGe 555 (660)
||++++++.+.|.+.+++.+++|.||+||+++.++..... ......+||+|++|++++|+|++++++|.|++ ||
T Consensus 1843 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~--GE 1920 (3956)
T PRK12467 1843 GEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVA--GE 1920 (3956)
T ss_pred cccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCc--eE
Confidence 9999999999998888778899999999999765543221 11234689999999999999999999999996 99
Q ss_pred EEE-----eccccCCcccccCcccccccccccccC-CCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHH
Q 006121 556 VGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTF 629 (660)
Q Consensus 556 l~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~-~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~ 629 (660)
|+| ++||++ ++++|+++|+.+|+. ++.|||||||+|||++||+|+|+||+|+|||++|+||+|+|||+
T Consensus 1921 l~i~G~~v~~GYl~------~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~ 1994 (3956)
T PRK12467 1921 LYLGGVGLARGYLN------RPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEA 1994 (3956)
T ss_pred EEeccccccccccC------ChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHH
Confidence 999 456666 788999999999985 47899999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 630 LSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 630 ~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
+|.+||+|++|+|++.....+..+++|+.
T Consensus 1995 ~l~~~p~V~~a~vv~~~~~~~~~lva~vv 2023 (3956)
T PRK12467 1995 RLREQGGVREAVVIAQDGANGKQLVAYVV 2023 (3956)
T ss_pred HHHhCCCcceEEEEEecCCCCcEEEEEEE
Confidence 99999999999999876556778999974
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-81 Score=817.33 Aligned_cols=582 Identities=14% Similarity=0.131 Sum_probs=476.6
Q ss_pred HcCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC--------Ccc
Q 006121 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--------PLY 85 (660)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~--------~~~ 85 (660)
++.+.+++..+|.++|++++.+..++ +||++||++ |++.++.. ..||||+||++||.+... .+.
T Consensus 2932 p~r~~~~~~~~~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~~~~~------~~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 3004 (3956)
T PRK12467 2932 PVIASPRAEQTVSDWLQQVQAQNLALREFEHTPLAD-IQRWAGQG------GEALFDSILVFENYPISEALKQGAPSGLR 3004 (3956)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHhhccC------CCCCcceEEEeecCCchhhhhccCCCCce
Confidence 34566677889999999999998888 999999999 99988532 236699999999864321 111
Q ss_pred cCC-ChhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCC
Q 006121 86 WFP-SLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (660)
Q Consensus 86 ~~~-~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (660)
..+ .....++|+|++.+.. ++++.+.+ |++ ++|++.++++|.++|.++|+++..++..+..++ +...+..
T Consensus 3005 ~~~~~~~~~~~~~l~l~~~~-~~~~~~~~~y~~-----~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~l~~~~~~ 3078 (3956)
T PRK12467 3005 FGAVSSREQTNYPLTLAVGL-GDTLELEFSYDR-----QHFDAAAIERLAESFDRLLQAMLNNPAARLGELPTLAAHERR 3078 (3956)
T ss_pred eecccccccccCceEEEecc-CcceeEEEEech-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccCCCHHHHH
Confidence 111 1234578899988765 56788888 999 999999999999999999999987777766553 3322222
Q ss_pred CCCCCcCCCCccchhhhcccc--cCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEE
Q 006121 162 KHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (660)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i 238 (660)
.....|+..........+++. ..+++++|+++|+++.++ ++||+||+++++++|++|++. +++|++|+|
T Consensus 3079 ~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l 3150 (3956)
T PRK12467 3079 QVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQ--------QLSYAELNRRANRLAHRLIAIGVGPDVLVGV 3150 (3956)
T ss_pred HHHHhhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCc--------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 233567765443333333332 346689999999999888 999999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCC
Q 006121 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (660)
Q Consensus 239 ~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 318 (660)
+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++...... +........+.+...
T Consensus 3151 ~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~---------~~~~~~~~~~~~~~~- 3220 (3956)
T PRK12467 3151 AVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQ---------LPAPAGDTALTLDRL- 3220 (3956)
T ss_pred EeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhh---------cccccCCceeeecch-
Confidence 9999999999999999999999999999999999999999999999998753211 100011111111100
Q ss_pred CCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCC
Q 006121 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (660)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 398 (660)
.+. . .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|
T Consensus 3221 ------------~~~---~------~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d 3279 (3956)
T PRK12467 3221 ------------DLN---G------YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDAND 3279 (3956)
T ss_pred ------------hhc---c------cCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCC
Confidence 000 0 0011122345789999999999999999999999999999999999999999999
Q ss_pred EEEEecCccccchhhHHHHhhhcCcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEE
Q 006121 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477 (660)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~ 477 (660)
++++++|++|+.+++++|.+|+.|+++++.++ ..++..+++.|++++||++.++|++++.|++.. ...++++||.++
T Consensus 3280 ~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~ 3357 (3956)
T PRK12467 3280 RVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYV 3357 (3956)
T ss_pred EEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEE
Confidence 99999999999999999999999999999883 258899999999999999999999999998653 234678999999
Q ss_pred eecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCC----CCcccccCcCCCCceEEEEcCCCCcCCCCCCce
Q 006121 478 STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (660)
Q Consensus 478 ~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~gi 553 (660)
+|||++++++.+++.+.+++++++|.||+||+++.++...... .....+||+|++|++++|+|++++++|+|++
T Consensus 3358 ~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~-- 3435 (3956)
T PRK12467 3358 FGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVA-- 3435 (3956)
T ss_pred EecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCC--
Confidence 9999999999999988887788999999999997654332211 1234689999999999999999999999997
Q ss_pred eEEEE-----eccccCCcccccCccccccccccccc-CCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHH
Q 006121 554 GEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPL 627 (660)
Q Consensus 554 Gel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eI 627 (660)
|||+| ++||++ ++++|+++|+.+|+ .+|+|||||||+|||++||+|+|+||+|+|||+||+||+|+||
T Consensus 3436 GEL~i~G~~v~~GY~~------~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EI 3509 (3956)
T PRK12467 3436 GELYIGGVGLARGYHQ------RPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEI 3509 (3956)
T ss_pred ceEEEcchhhhhhccC------CcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHH
Confidence 99999 456666 88899999999998 6789999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 628 TFLSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 628 E~~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
|++|.+||+|++|+|++.....+..+++|+.
T Consensus 3510 E~~l~~~p~V~~a~v~~~~~~~~~~lva~v~ 3540 (3956)
T PRK12467 3510 EARLLQHPSVREAVVLARDGAGGKQLVAYVV 3540 (3956)
T ss_pred HHHHhhCcccceEEEEEecCCCCcEEEEEEe
Confidence 9999999999999999876666788999975
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-79 Score=809.52 Aligned_cols=578 Identities=18% Similarity=0.192 Sum_probs=476.2
Q ss_pred HcCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC----Cccc--C
Q 006121 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYW--F 87 (660)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~----~~~~--~ 87 (660)
++.++++...+|.++|+++++...++ +||++||++ |++.++++|+. +..||||+||++++..... .... .
T Consensus 2892 Plrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~--~~~plf~~~~~~~~~~~~~~~~~~~~~~~~ 2968 (5163)
T PRK12316 2892 VLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQ-LVEALQPERSL--SHSPLFQVMYNHQSGERAAAQLPGLHIESF 2968 (5163)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHhcccccc--CCCCceeEEEeeeccccccccCCCceeEee
Confidence 44566677889999999999998887 999999999 99999998884 4556699999999865332 1111 1
Q ss_pred CChhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCCCCC
Q 006121 88 PSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHG 164 (660)
Q Consensus 88 ~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~ 164 (660)
.......+|||.+.+.+.++++...+ |++ ++|++.++++|.++|.++|+++...++.+...+ +...+.....
T Consensus 2969 ~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~l~~~~~~~~~~~~ 3043 (5163)
T PRK12316 2969 AWDGAATQFDLALDTWESAEGLGASLTYAT-----DLFDARTVERLARHWQNLLRGMVENPQRSVDELAMLDAEERGQLL 3043 (5163)
T ss_pred eccCCccceeeEEEEEecCCcEEEEEEECc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccCCCHHHHHHHH
Confidence 11245678999999988888899999 999 999999999999999999999987776665543 2322222223
Q ss_pred CCcCCCCccchhhhcccc--cCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcC
Q 006121 165 GTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~ 241 (660)
..|+......+...+++. ..+|+++|+++|+++.++ .+||+||+++++++|++|++. +++|++|+|+++
T Consensus 3044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~ 3115 (5163)
T PRK12316 3044 EAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQ--------RLSYAELNRRANRLAHRLIERGVGPDVLVGVAVE 3115 (5163)
T ss_pred HHhCCCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCe--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcc
Confidence 457655433332233332 346789999999999888 999999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCC
Q 006121 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321 (660)
Q Consensus 242 ~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 321 (660)
||+++++++|||+|+|++||||||.+|.+|+++|+++++++++|+++.. .++ .......+.+....
T Consensus 3116 ~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~-----~~~------~~~~~~~~~~~~~~--- 3181 (5163)
T PRK12316 3116 RSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-----RLP------LAQGVQVLDLDRGD--- 3181 (5163)
T ss_pred CCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc-----cCC------ccCCccEEEecccc---
Confidence 9999999999999999999999999999999999999999999998642 000 00011122221100
Q ss_pred CCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEE
Q 006121 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (660)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l 401 (660)
.. .....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++++++
T Consensus 3182 ---------------~~-----~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l 3241 (5163)
T PRK12316 3182 ---------------EN-----YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVL 3241 (5163)
T ss_pred ---------------cc-----ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEE
Confidence 00 0011122345678999999999999999999999999999999999999999999999
Q ss_pred EecCccccchhhHHHHhhhcCcEEEEecC--CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEee
Q 006121 402 WPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (660)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (660)
++++++||.+++++|.+|++|+++++.+. ..++..+.+.++++++|++.++|+++..+++.. ....+++||.+++|
T Consensus 3242 ~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~--~~~~~~~lr~~~~g 3319 (5163)
T PRK12316 3242 QFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEE--DAHRCTSLKRIVCG 3319 (5163)
T ss_pred eecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc--ccccCCcceEEEEc
Confidence 99999999999999999999999999864 247889999999999999999999999988653 23346899999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCc-CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v 558 (660)
||++++++.++|.. +.+++|.||||||++.++.... .......+||+|++|++++|+|++++++|+|++ |||+|
T Consensus 3320 Ge~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GEl~i 3394 (5163)
T PRK12316 3320 GEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL--GELYL 3394 (5163)
T ss_pred cccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC--ceEEe
Confidence 99999999998873 4679999999999986654433 222345789999999999999999999999996 99999
Q ss_pred -----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 559 -----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
++||++ ++++|+++|+.+|+.+++|||||||+|||++||+|+|+||+|+|||++|+||||+|||++|.+
T Consensus 3395 ~G~~v~~GY~~------~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~l~~ 3468 (5163)
T PRK12316 3395 GGEGLARGYHN------RPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLE 3468 (5163)
T ss_pred cccccchhcCC------ChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHHHHh
Confidence 456666 888999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecCcceeeeecc
Q 006121 634 RSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
||+|++|+|++.. +..|++|+.
T Consensus 3469 ~~~V~~a~v~~~~---~~~l~a~vv 3490 (5163)
T PRK12316 3469 HPWVREAVVLAVD---GRQLVAYVV 3490 (5163)
T ss_pred CCCcceEEEEEcc---CCeEEEEEE
Confidence 9999999888764 578999874
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-78 Score=798.34 Aligned_cols=578 Identities=15% Similarity=0.136 Sum_probs=468.5
Q ss_pred HHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCCC-------ccc-CCChhhh
Q 006121 23 AEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP-------LYW-FPSLDQS 93 (660)
Q Consensus 23 ~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~-------~~~-~~~~~~~ 93 (660)
..++.++|+++++...++ +||++||.+ |++..+..+. .||||++|++||.+.... ... .......
T Consensus 3565 ~~t~~~~L~~v~~~~~~~~~~q~~~l~~-i~~~~~~~~~-----~~LF~t~~v~~n~~~~~~~~~~~~~~~~~~~~~~~~ 3638 (4334)
T PRK05691 3565 RCSVRQWLQGLLDSNMELREYEYLPLVA-IQECSELPKG-----QPLFDSLFVFENAPVEVSVLDRAQSLNASSDSGRTH 3638 (4334)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCHHH-HHHHhcCCCC-----CCCccEEEEeecCCcchhhhcccccccccccccccc
Confidence 358999999999888877 899999999 9887754322 256999999999764321 000 1111345
Q ss_pred cccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCCCCCCCcCCC
Q 006121 94 KLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGTWLPG 170 (660)
Q Consensus 94 ~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~ 170 (660)
++|+|++.+.. ++.+...+ |++ ++|++.+++++.++|.++|+++...+..+..++ +...+.......|+..
T Consensus 3639 ~~~~l~~~~~~-~~~l~~~l~y~~-----~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3712 (4334)
T PRK05691 3639 TNFPLTAVCYP-GDDLGLHLSYDQ-----RYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPLLGEQERDFLLDGCNRS 3712 (4334)
T ss_pred cCCCeEEEEec-CCceEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCCCCHHHHHHHHHhhCCc
Confidence 67888886544 45677888 999 999999999999999999999987777766554 3332222234456655
Q ss_pred Cccchhhhcccc--cCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHH
Q 006121 171 SVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAV 247 (660)
Q Consensus 171 ~~~~~~~~~l~~--~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~v 247 (660)
....+...+++. .+|++++|+++|+++.+. ++||+||+++++++|++|++. +++|++|+|++++|++++
T Consensus 3713 ~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~ 3784 (4334)
T PRK05691 3713 ERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLL 3784 (4334)
T ss_pred cCCCccccCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 444333434432 356799999999999988 999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC---CcEEEEcCCCCCCCCC
Q 006121 248 IIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIP 324 (660)
Q Consensus 248 va~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~ 324 (660)
+++|||+|+|++||||||.+|.+|+.+|+++++++++|+++...... ..+..... ...+++
T Consensus 3785 v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~---------- 3848 (4334)
T PRK05691 3785 GMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQA------RALLDELGCANRPRLLV---------- 3848 (4334)
T ss_pred HHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchh------hhhhcccccccccceee----------
Confidence 99999999999999999999999999999999999999998643211 11111110 001111
Q ss_pred CCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEec
Q 006121 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT 404 (660)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~ 404 (660)
+++..... .+...+.....|+++|||+|||||||+||||+++|+++++.+.+....++++++|++++++
T Consensus 3849 -------~~~~~~~~----~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 3917 (4334)
T PRK05691 3849 -------WEEVQAGE----VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTA 3917 (4334)
T ss_pred -------eccccccc----ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEec
Confidence 01110000 0011122345689999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHhhhcCcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCC
Q 006121 405 NLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (660)
Q Consensus 405 ~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~ 482 (660)
+++||.+++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.|+... ...+++||.+++|||+
T Consensus 3918 s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~ 3994 (4334)
T PRK05691 3918 SQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEA 3994 (4334)
T ss_pred CCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCc
Confidence 999999999999999999999998743 47889999999999999999999999987643 2346899999999999
Q ss_pred CChhhHHHHHhhCCCCceeccccccccccccccCCcC---CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-
Q 006121 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL- 558 (660)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v- 558 (660)
+++++.+.|.+..++++++|.||||||++.++..... ......+||+|++|++++|+|++++++|.|+. |||+|
T Consensus 3995 l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~--GEL~i~ 4072 (4334)
T PRK05691 3995 MPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAV--GELCVA 4072 (4334)
T ss_pred CCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCc--eEEEEe
Confidence 9999999998888889999999999999765433221 12234589999999999999999999999996 99999
Q ss_pred ----eccccCCcccccCcccccccccccccC-CCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 559 ----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 559 ----~~~y~~~~~~~~~~~~t~~~f~~~p~~-~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
+.||++ ++++|+++|+++|+. +++|||||||+|||++||+|+|+||+|+|||+||+|||++|||++|.+
T Consensus 4073 G~~v~~GY~~------~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~ 4146 (4334)
T PRK05691 4073 GTGVGRGYVG------DPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHE 4146 (4334)
T ss_pred cccccccccC------CcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHh
Confidence 467776 889999999999984 688999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecCcceeeeecc
Q 006121 634 RSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
+|+|.+|+|++.....+..|++|+.
T Consensus 4147 ~~~v~~a~v~~~~~~~~~~l~a~~~ 4171 (4334)
T PRK05691 4147 QAEVREAAVAVQEGVNGKHLVGYLV 4171 (4334)
T ss_pred CCCccEEEEEEecCCCCcEEEEEEe
Confidence 9999999888776666778999975
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=805.14 Aligned_cols=586 Identities=18% Similarity=0.180 Sum_probs=478.3
Q ss_pred HcCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC-------Cc--
Q 006121 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-------PL-- 84 (660)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~-------~~-- 84 (660)
++.++++++.+|.++|++++....++ +||++||++ +++.|+++|+. +..||||+||++|+..... ..
T Consensus 343 plr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~-iv~~l~~~r~~--~~~plf~~~~~~~~~~~~~~~~~~~~~~~~ 419 (5163)
T PRK12316 343 VLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLPFER-LVEALKVERSL--SHSPLFQVMYNHQPLVADIEALDTVAGLEF 419 (5163)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhCCCCCC--CCCCcEEEEEEeecccccccccccCCCceE
Confidence 45566777788999999999988877 999999999 99999999984 4556699999999742211 11
Q ss_pred ccCCChhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCC
Q 006121 85 YWFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (660)
Q Consensus 85 ~~~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (660)
...+......+|||.+.+.+.++++.+.+ |++ ++|++++++++.++|.++|+++..+++.+..++ +...+..
T Consensus 420 ~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~~~~ 494 (5163)
T PRK12316 420 GQLEWKSRTTQFDLTLDTYEKGGRLHAALTYAT-----DLFEARTVERMARHWQNLLRGMVENPQARVDELPMLDAEERG 494 (5163)
T ss_pred EeeccCCCccceeEEEEEEEcCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhccccccccCCCCCHHHHH
Confidence 11122345678999999988889999999 999 999999999999999999999987777776654 3332222
Q ss_pred CCCCCcCCCCccchhhhccc--ccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEE
Q 006121 162 KHGGTWLPGSVLNIAECCLL--PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (660)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~--~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i 238 (660)
.....|+..........+++ ...+++++|+++|+++.++ ++||+||+++++++|+.|++. +++|++|+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l 566 (5163)
T PRK12316 495 QLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIERGVGPDVLVGV 566 (5163)
T ss_pred HHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 22234554332211112222 1235689999999999877 999999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCC
Q 006121 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (660)
Q Consensus 239 ~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 318 (660)
+++|++++++++|||+|+|++||||||.+|.+|+.+++++++++++|++....... + .......+.+...
T Consensus 567 ~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~~~~- 636 (5163)
T PRK12316 567 AMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL---P------LAAGVQVLDLDRP- 636 (5163)
T ss_pred EeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhC---C------cccCceEEEecCc-
Confidence 99999999999999999999999999999999999999999999999987532110 0 0001111211100
Q ss_pred CCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCC
Q 006121 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (660)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 398 (660)
........ ...+.....++++|||+|||||||+||||+++|+++++.+.+....+++++++
T Consensus 637 --------------~~~~~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d 697 (5163)
T PRK12316 637 --------------AAWLEGYS-----EENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGD 697 (5163)
T ss_pred --------------chhhccCC-----CCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCC
Confidence 00001000 11122345679999999999999999999999999999999999999999999
Q ss_pred EEEEecCccccchhhHHHHhhhcCcEEEEecC--CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEE
Q 006121 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476 (660)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v 476 (660)
++++.+|++|+++++++|.+|++|+++++++. ..++..+++.|++++||++.++|++++.|++... ..++++||.+
T Consensus 698 ~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~ 775 (5163)
T PRK12316 698 TVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRI 775 (5163)
T ss_pred EEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEE
Confidence 99999999999999999999999999999863 3588899999999999999999999999986532 3357899999
Q ss_pred EeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCc-CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeE
Q 006121 477 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555 (660)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGe 555 (660)
++|||++++++.+++.+.+++++++|.||+||+++.++.... .......++|+|++|++++|+|++++++|.|++ ||
T Consensus 776 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GE 853 (5163)
T PRK12316 776 VCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVL--GE 853 (5163)
T ss_pred EEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCc--eE
Confidence 999999999999999888888899999999999864433322 223345689999999999999999999999997 99
Q ss_pred EEE-----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHh
Q 006121 556 VGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFL 630 (660)
Q Consensus 556 l~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~ 630 (660)
|+| +.||++ +++.|+++|+.+|+.+|.|||+|||+|++++||+|+|+||+|||||++|+||+|+|||++
T Consensus 854 l~i~G~~v~~GYl~------~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~ 927 (5163)
T PRK12316 854 LYLAGRGLARGYHG------RPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEAR 927 (5163)
T ss_pred EEecccccChhhCC------ChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHH
Confidence 999 346665 788999999999988889999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 631 SSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 631 L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
|.+||+|++|+|++.. +..+++|+.
T Consensus 928 l~~~p~V~~a~V~~~~---~~~lva~vv 952 (5163)
T PRK12316 928 LLEHPWVREAAVLAVD---GKQLVGYVV 952 (5163)
T ss_pred HHhCCCcceEEEEEcC---CCeEEEEEE
Confidence 9999999999988764 678888875
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=735.85 Aligned_cols=582 Identities=17% Similarity=0.137 Sum_probs=457.4
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCCCc---cc-CCCh
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPL---YW-FPSL 90 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~~---~~-~~~~ 90 (660)
+.+..+++.+|.++|++++....++ +||+|||++ |++.++..+ +..||||+||++++....... .. ....
T Consensus 299 lr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~----~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1296)
T PRK10252 299 LRVHIAAQETLPELATRLAAQLKKMRRHQRYDAEQ-IVRDSGRAA----GDEPLFGPVLNIKVFDYQLDFPGVQAQTHTL 373 (1296)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHhcCcc----CCCCceeEEEEeeecccccCcCCccceeeec
Confidence 3455566778999999999888887 999999999 999996433 344669999999875432111 00 0000
Q ss_pred hhhcccchHHHHH-HhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCCCCCCC
Q 006121 91 DQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGGT 166 (660)
Q Consensus 91 ~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~ 166 (660)
.....+||++.+. +.++++...+ |++ ++|++++++++.++|..+|+++..++..+..++ +...+... +..
T Consensus 374 ~~~~~~dl~l~~~~~~~~~l~~~~~y~~-----~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~~~-~~~ 447 (1296)
T PRK10252 374 ATGPVNDLELALFPDEHGGLSIEILANP-----QRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQ-LAQ 447 (1296)
T ss_pred CCCccCCeEEEEEECCCCcEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHHHH-HHH
Confidence 1123457777765 3456788888 999 999999999999999999999987776665443 22221111 223
Q ss_pred cCCCCccchhhhccc-ccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCH
Q 006121 167 WLPGSVLNIAECCLL-PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (660)
Q Consensus 167 ~~~~~~~~~~~~~l~-~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (660)
|+..........+.+ ...+++++|+++|+++.+. ++||+||+++++++|++|.+. +++|++|+|+++|++
T Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~ 519 (1296)
T PRK10252 448 VNATAVEIPETTLSALVAQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSV 519 (1296)
T ss_pred hcCCCCCCCcCCHHHHHHHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH
Confidence 443322211111111 1234588999999999877 999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCC
Q 006121 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324 (660)
Q Consensus 245 ~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 324 (660)
++++++|||+++|++|+||||.+|.+|+.+++++++++++|+++........ .+. ..+.
T Consensus 520 ~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----------~~~-~~~~---------- 578 (1296)
T PRK10252 520 FLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----------VPD-LTSL---------- 578 (1296)
T ss_pred HHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----------CCC-ceee----------
Confidence 9999999999999999999999999999999999999999998753211100 000 0000
Q ss_pred CCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEec
Q 006121 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT 404 (660)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~ 404 (660)
.+........ ..+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+
T Consensus 579 ------~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~ 646 (1296)
T PRK10252 579 ------CYNAPLAPQG------AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKT 646 (1296)
T ss_pred ------eccccccccc------CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeC
Confidence 0010000000 0011223578999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHhhhcCcEEEEecC--CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCC--CCCccCccEEEeec
Q 006121 405 NLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTG 480 (660)
Q Consensus 405 ~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~gG 480 (660)
|++|+.+++++|.+|++|+++++.+. ..++..++++|++++||++.++|++++.+++..... ...++++|.+++||
T Consensus 647 ~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gG 726 (1296)
T PRK10252 647 PCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSG 726 (1296)
T ss_pred CcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEec
Confidence 99999999999999999999999864 347889999999999999999999999988653222 23468999999999
Q ss_pred CCCChhhHHHHHhhCCCCceeccccccccccccccCCcCC------CCcccccCcCCCCceEEEEcCCCCcCCCCCCcee
Q 006121 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (660)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giG 554 (660)
|++++++.+.+.+.+ +++++|.||+||+++.++...... .....++|+|++|++++|+|++++++|.|++ |
T Consensus 727 e~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~--G 803 (1296)
T PRK10252 727 EALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVA--G 803 (1296)
T ss_pred CCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCc--e
Confidence 999999999888765 578999999999987554432211 2335689999999999999999999999997 9
Q ss_pred EEEE-----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHH
Q 006121 555 EVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTF 629 (660)
Q Consensus 555 el~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~ 629 (660)
||+| +.||++ +++.|+++|..+|+.++.+||+|||+|++++||+|+|+||.|+|||++|+||+|.|||+
T Consensus 804 el~i~g~~~~~GY~~------~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~ 877 (1296)
T PRK10252 804 DLYLTGIQLAQGYLG------RPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDR 877 (1296)
T ss_pred EEEecccccchhhCC------CcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHH
Confidence 9999 346665 78899999999999889999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeeEEEEEee-------cCcceeeeecc
Q 006121 630 LSSPRSSFKCLHIYAWLY-------FHKLELIFYFS 658 (660)
Q Consensus 630 ~L~~~~~V~~a~vv~~~~-------~~~~~l~a~~~ 658 (660)
+|.+||+|++|+|++... .+...+++|+.
T Consensus 878 ~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~ 913 (1296)
T PRK10252 878 AMQALPDVEQAVTHACVINQAAATGGDARQLVGYLV 913 (1296)
T ss_pred HHHhCccccceEEEEEeccccccCCCCccEEEEEEE
Confidence 999999999998876531 12246898875
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-77 Score=733.31 Aligned_cols=609 Identities=16% Similarity=0.118 Sum_probs=461.6
Q ss_pred HHcCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCCCcccCCChhh
Q 006121 14 MKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQ 92 (660)
Q Consensus 14 ~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~~~~~~~~~~ 92 (660)
.++.+.+++..+|.++|++++.+..++ +||++||++ |++.+++.|+.+.++ |+||++|..+..... ..+ ..
T Consensus 82 lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~~~~~~p-~lf~~~~~~~~~~~~--~~~----~~ 153 (1389)
T TIGR03443 82 FVLRLNITPELSFLQLYAKVSEEEKEGASDIGVPFDE-LSEHIQAAKKLERTP-PLFRLAFQDAPDNQQ--TTY----ST 153 (1389)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccCCCCCC-ccEEEEeecCCcccc--ccc----cc
Confidence 456677788899999999999998887 999999999 999999988755544 479876654322111 111 34
Q ss_pred hcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCCCC-----C
Q 006121 93 SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH-----G 164 (660)
Q Consensus 93 ~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~-----~ 164 (660)
.++|||++.+.+.++++...+ |++ ++|++++++++.++|..+|+++...++.+..++ +...+.... .
T Consensus 154 ~~~~dl~~~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~ 228 (1389)
T TIGR03443 154 GSTTDLTVFLTPSSPELELSIYYNS-----LLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSLITPSQKSLLPDPTKD 228 (1389)
T ss_pred CCccceEEEEEecCCcEEEEEEEch-----hcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccCCCHHHHhhhhccccc
Confidence 578999999888888999999 999 999999999999999999999987777776553 222221110 1
Q ss_pred CCcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCC-CCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCC
Q 006121 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~ 242 (660)
..|... .......+. .+++++|+++|+++..... .....+++||+||+++++++|++|++. +++|++|+|+++|
T Consensus 229 ~~~~~~--~~~l~~~~~--~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~ 304 (1389)
T TIGR03443 229 LDWSGF--RGAIHDIFA--DNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYR 304 (1389)
T ss_pred cCcCcc--cCcHHHHHH--HHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecC
Confidence 123211 011122233 3458899999998742200 011234899999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccC-----CCcEEEEcCC
Q 006121 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAI 317 (660)
Q Consensus 243 s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~ 317 (660)
++++++++|||+|+|++|+|+||.+|.+++.++++++++++++++..... ............ ....+.+...
T Consensus 305 ~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1389)
T TIGR03443 305 GVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT---LDQLVRDYIDKELELRTEIPALALQDD 381 (1389)
T ss_pred CHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc---cchhhhhhhhcccccccccceEEeccc
Confidence 99999999999999999999999999999999999999999998764210 001111110000 0001111110
Q ss_pred CCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCC
Q 006121 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (660)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (660)
........ .....+....... ...........++++|||+|||||||+||||+++|+++++.+.+....++++++
T Consensus 382 ~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 456 (1389)
T TIGR03443 382 GSLVGGSL---EGGETDVLAPYQA--LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSEN 456 (1389)
T ss_pred cccccccc---ccccccccccccc--cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCC
Confidence 00000000 0000011100000 000011223467899999999999999999999999999999988889999999
Q ss_pred CEEEEecCccccchhhHHHHhhhcCcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccE
Q 006121 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 475 (660)
Q Consensus 398 ~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~ 475 (660)
|++++.++++|+.+++++|.+|+.|+++++.+.. .++..+++.|++++||+++++|++++.|.... ...+++||.
T Consensus 457 d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~ 533 (1389)
T TIGR03443 457 DKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHH 533 (1389)
T ss_pred CEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccE
Confidence 9999999999999999999999999999998643 36789999999999999999999999987543 235789999
Q ss_pred EEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCC----------CCcccccCcCCCCceEEEEcCC--C
Q 006121 476 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDEC--G 543 (660)
Q Consensus 476 v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~--~ 543 (660)
+++|||++++...+++....++++++|.||+||+++.++...... .....++|+|++|++++|+|++ +
T Consensus 534 ~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~ 613 (1389)
T TIGR03443 534 AFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRT 613 (1389)
T ss_pred EEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCC
Confidence 999999999999888888777889999999999986544322110 1124689999999999999964 5
Q ss_pred CcCCCCCCceeEEEE-----eccccCCcccccCcccccccccccccC----------------------CCceeEeeCce
Q 006121 544 VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY----------------------KGMCLRRHGDI 596 (660)
Q Consensus 544 ~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~----------------------~~~r~y~TGDl 596 (660)
+++|.|++ |||+| +.||++ +++.|+++|..+|+. ++.+||+|||+
T Consensus 614 ~~~~~G~~--GEL~i~G~~v~~GY~~------~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDl 685 (1389)
T TIGR03443 614 QTCGVGEV--GEIYVRAGGLAEGYLG------LPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDL 685 (1389)
T ss_pred CcCCCCCc--eEEEecccccchhcCC------ChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCc
Confidence 88999997 99999 356665 788999999876542 34689999999
Q ss_pred EEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 597 IKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 597 ~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
|++++||+|+|+||.|||||++|+||+|.|||++|.+||.|++++|++..+.. +..+++|+.
T Consensus 686 g~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv 748 (1389)
T TIGR03443 686 GRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIV 748 (1389)
T ss_pred eeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999887765443 456888764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-77 Score=783.73 Aligned_cols=591 Identities=14% Similarity=0.119 Sum_probs=472.9
Q ss_pred HcCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC-----Cc--cc
Q 006121 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PL--YW 86 (660)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~-----~~--~~ 86 (660)
++.++++++.+|.++|++++++..++ +||++||++ |++.|+++|..+.+ ||||+||++|+..... .. ..
T Consensus 2022 Plrv~~~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~--plf~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (4334)
T PRK05691 2022 VLRCQLDGQMSVSELLEQVRQTVIEGQSHQDLPFDH-LVEALQPPRSAAYN--PLFQVMCNVQRWEFQQSRQLAGMTVEY 2098 (4334)
T ss_pred eEEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccccCCC--CceEEEEEeeccccccccCCCCceeEe
Confidence 45566777888999999999998887 999999999 99999998885544 5699999998754221 11 11
Q ss_pred CCChhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCCCC
Q 006121 87 FPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH 163 (660)
Q Consensus 87 ~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~ 163 (660)
.......++|||.+.+.+.++++.+.+ |++ ++|++++++++.++|.++|+++..++..+...+ +...+....
T Consensus 2099 ~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l 2173 (4334)
T PRK05691 2099 LVNDARATKFDLNLEVTDLDGRLGCCLTYSR-----DLFDEPRIARMAEHWQNLLEALLGDPQQRLAELPLLAAAEQQQL 2173 (4334)
T ss_pred ecccCCccccceEEEEEecCCcEEEEEEECc-----ccCCHHHHHHHHHHHHHHHHHHHhhhcCChhhccCCcHHHHHHH
Confidence 122235688999999888888899999 999 999999999999999999999977766665443 222221111
Q ss_pred CCCcCCCCccchhhhcccc--cCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEc
Q 006121 164 GGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDM 240 (660)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~ 240 (660)
...|+..........+++. ..+++++|+++|+++.++ ++||+||+++++++|++|++. +++|++|++++
T Consensus 2174 ~~~~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~l~~ 2245 (4334)
T PRK05691 2174 LDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQ--------TLSYAELDARANRLARALRERGVGPQVRVGLAL 2245 (4334)
T ss_pred HHHhCCCCcCCCcccchHHHHHHHHHHCCCCeEEEeCCe--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 2223332222222223332 345689999999999887 999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCC
Q 006121 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320 (660)
Q Consensus 241 ~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 320 (660)
+||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++..........+ . ....+.+...
T Consensus 2246 ~~s~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~------~--~~~~~~~~~~--- 2314 (4334)
T PRK05691 2246 ERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGELP------A--GVARWCLEDD--- 2314 (4334)
T ss_pred CCCHHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhhcccc------c--cceeEEeccc---
Confidence 9999999999999999999999999999999999999999999999875321110000 0 0001111000
Q ss_pred CCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEE
Q 006121 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVY 400 (660)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~ 400 (660)
...+ .... .........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++
T Consensus 2315 -----------~~~~-~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~~~d~~ 2377 (4334)
T PRK05691 2315 -----------AAAL-AAYS-----DAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCE 2377 (4334)
T ss_pred -----------hhhh-hcCC-----CCCCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCcccEE
Confidence 0000 0000 0011122357899999999999999999999999999999988889999999999
Q ss_pred EEecCccccchhhHHHHhhhcCcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEee
Q 006121 401 CWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (660)
Q Consensus 401 l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (660)
+++++++||.+++++|.+|++|+++++.+. ..++..+.+.|++++||++.++|++++.|.+.... .....++|.+++|
T Consensus 2378 l~~~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~-~~~~~~lr~i~~g 2456 (4334)
T PRK05691 2378 LHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAG-QGEQLPVRMCITG 2456 (4334)
T ss_pred EEecCccHHHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhc-cccCCCceEEEEc
Confidence 999999999999999999999999999764 34788999999999999999999999999865422 2345689999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeE
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGe 555 (660)
||++++++.+++.+.++...++|.||+||++++.+.+... ......++|+|++|+.++|+|++++++|.|++ ||
T Consensus 2457 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~--GE 2534 (4334)
T PRK05691 2457 GEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGAT--GE 2534 (4334)
T ss_pred cccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEEECCCCCCCCCCCc--eE
Confidence 9999999999999888767899999999998644332211 11223579999999999999999999999997 99
Q ss_pred EEE-----eccccCCcccccCcccccccccccccC-CCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHH
Q 006121 556 VGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTF 629 (660)
Q Consensus 556 l~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~-~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~ 629 (660)
|+| +.||++ +++.|+++|+.+|+. .++|||+|||+|||++||+|+|+||+|+|||++|+||+|+|||+
T Consensus 2535 L~i~G~~v~~GY~~------~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~ 2608 (4334)
T PRK05691 2535 LYVGGAGLAQGYHD------RPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIES 2608 (4334)
T ss_pred EEecccccCccccC------ChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHH
Confidence 999 456665 788999999999985 47899999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 630 LSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 630 ~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
+|.+||+|++|+|+......+..+++|+.
T Consensus 2609 ~l~~~p~V~~a~V~~~~~~~~~~lva~vv 2637 (4334)
T PRK05691 2609 RLLEHPAVREAVVLALDTPSGKQLAGYLV 2637 (4334)
T ss_pred HHHhCCCcceEEEEEeeCCCCcEEEEEEE
Confidence 99999999999998876666778998874
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=608.73 Aligned_cols=458 Identities=25% Similarity=0.356 Sum_probs=387.5
Q ss_pred CcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEEcCCC
Q 006121 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMT 243 (660)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s 243 (660)
+|+.++.+|.++++++++.. ...+|++|+++.++. ++. +++||+||.+.++++|+.|++. + +||||+|+||++
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~-~~~~~~~aii~~~e~--~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~ 75 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLE-ADRPDDTAIIFDGED--GLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNS 75 (528)
T ss_pred CCcCCceeechhhhhhhhhh-ccCCCceEEEEEcCC--CCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCC
Confidence 49999999999999998752 233899999998762 222 7999999999999999999975 7 999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCC
Q 006121 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (660)
Q Consensus 244 ~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 323 (660)
+|.+++||||+|+||+++|+.+.++++.+++.++++++++||+++...+.++..+....+.+.... ++++...+
T Consensus 76 pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~iv~~r~~----- 149 (528)
T COG0365 76 PEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-VVVVPRLG----- 149 (528)
T ss_pred HHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-eEEecccc-----
Confidence 999999999999999999999999999999999999999999999999999988887777666555 44443322
Q ss_pred CCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh-hHhcCCCCCCEEEE
Q 006121 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG-WAHIDLKVGDVYCW 402 (660)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~-~~~~~~~~~~~~l~ 402 (660)
.+|+++...... .++.....++|+++|+|||||||+||||+++|++++...... ...+.+.++|++++
T Consensus 150 ------~~~~~~~~~~~~-----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~ 218 (528)
T COG0365 150 ------LWYDEAVEKASE-----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWN 218 (528)
T ss_pred ------ccHHHHhhccCC-----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEe
Confidence 567777765443 233344788999999999999999999999999876555433 34678889999999
Q ss_pred ecCccccchhhH-HHHhhhcCcEEEEecCCCC--hhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEee
Q 006121 403 PTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (660)
Q Consensus 403 ~~~~~~~~~~~~-~~~~l~~G~~lv~~~~~~~--~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (660)
.++++|..+.+. ++++|++|++++++++.++ +..++++|++++||+++++|+.+++|.+......+++++||.+.+.
T Consensus 219 ~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~Sa 298 (528)
T COG0365 219 SSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSA 298 (528)
T ss_pred CCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeecc
Confidence 999999999965 8999999999999987654 8999999999999999999999999999876667899999999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~ 559 (660)
||+|+++.++|+.+.++ ++|.+.||+||++.++....+ +.+.++.|+|+||.++.|+|++|+++|+|+ |+|+|.
T Consensus 299 GEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~ 372 (528)
T COG0365 299 GEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV---GELVVR 372 (528)
T ss_pred CCCCCHHHHHHHHHHhC-CCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCCCCc---eEEEEe
Confidence 99999999999999886 999999999999966555444 445566699999999999999999999998 999993
Q ss_pred ccccCCccccc-CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCce
Q 006121 560 PLYLGASDRLL-NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFK 638 (660)
Q Consensus 560 ~~y~~~~~~~~-~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~ 638 (660)
....+...+|+ +++.+.+.|.. . ||.|||.+++|+||+++|+||.||.||+.|+||.+.|||++|.+||+|.
T Consensus 373 ~~~p~~~~~~w~d~er~~~~y~~------~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~Va 445 (528)
T COG0365 373 LPWPGMALTYWNDPERYKEAYFG------R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVA 445 (528)
T ss_pred CCCchhhhhhhCCHHHHHHHHhh------c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCccee
Confidence 21112222233 44555444432 1 9999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeecCcc-eeeeecc
Q 006121 639 CLHIYAWLYFHKL-ELIFYFS 658 (660)
Q Consensus 639 ~a~vv~~~~~~~~-~l~a~~~ 658 (660)
||+||...++.+. .+++|+.
T Consensus 446 EaAvVg~pd~~kg~~v~afVv 466 (528)
T COG0365 446 EAAVVGVPDPGKGQIVLAFVV 466 (528)
T ss_pred eeEEEeccCCCCCcEEEEEEE
Confidence 9999998765544 4666653
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-71 Score=626.59 Aligned_cols=525 Identities=19% Similarity=0.225 Sum_probs=410.3
Q ss_pred CccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEE
Q 006121 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVW 197 (660)
Q Consensus 118 ~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~ 197 (660)
+.+|+-+.+.+++++..||..+.+.+ ..|.+++.++++.. ....+|+.++.+|.+.++++++.....+|+++|+++
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~---~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~ 82 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKY-VHWDKMYDKVYSGD---EIYPDWFKGGELNTCYNVLDIHVKNPLKRDQDALIY 82 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhc-CeeeCCcccccCCC---CCchhhCCCCeeeHHHHHHHHhhcccCCCCceEEEE
Confidence 35678889999999999999999986 68999999998642 223789999999999999987652123799999998
Q ss_pred ecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHH
Q 006121 198 REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL 276 (660)
Q Consensus 198 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l 276 (660)
... +.+..+++||+||.++++++|+.|++. |++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus 83 ~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l 160 (647)
T PTZ00237 83 ECP--YLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRI 160 (647)
T ss_pred EcC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHH
Confidence 643 112346899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCeeEEEeecceeecCccccchhhHhccC------CCcEEEEcCCCCC--C------CCCCCCCCcchhhhhccCCCC
Q 006121 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLGAA------PLKAIVLPAIGND--V------GIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 277 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+++++++||+++...+..+.++....+.+.. ...++++...... . .....+....|++++......
T Consensus 161 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (647)
T PTZ00237 161 ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKEN 240 (647)
T ss_pred HhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccc
Confidence 9999999999887665555544443332221 1233333221100 0 000111334566665432110
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchh-hHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
............+++++||+|||||||+||||+++|++ +.+........+....++++++.++++|+.+...++.+|+.
T Consensus 241 ~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~ 320 (647)
T PTZ00237 241 NQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSL 320 (647)
T ss_pred cCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhC
Confidence 00111122345779999999999999999999999998 44433333445667789999999999999877678899999
Q ss_pred CcEEEEecCCC-C----hhhHHHHHHHcCCeEEeecHHHHHHHHhcCC-----CCCCCccCccEEEeecCCCChhhHHHH
Q 006121 422 GATLALYQGSP-L----ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----LEGLDWTKIRSFASTGETSNVDDDLWL 491 (660)
Q Consensus 422 G~~lv~~~~~~-~----~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~-----~~~~~l~~lr~v~~gGe~l~~~~~~~~ 491 (660)
|++++++++.. . +..+++.|++++||++.++|++++.|++... ....++++||.+++|||++++++.+++
T Consensus 321 G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~ 400 (647)
T PTZ00237 321 GNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI 400 (647)
T ss_pred CcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHH
Confidence 99999987532 2 5789999999999999999999999987532 234578999999999999999999999
Q ss_pred HhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe-c---cccCCcc
Q 006121 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-P---LYLGASD 567 (660)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~-~---~y~~~~~ 567 (660)
++.++ ++++|.||+||++++++..........+++|+|++|++++|+|++|+++|.|+. |||++. | ++..+
T Consensus 401 ~~~~g-~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~--GEl~v~~p~~p~~~~g-- 475 (647)
T PTZ00237 401 ENKLK-IKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEI--GEVAFKLPMPPSFATT-- 475 (647)
T ss_pred HHhcC-CCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCc--eEEEEeccCCchhhCc--
Confidence 88764 889999999999865443322222334789999999999999999999999996 999993 2 22221
Q ss_pred cccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEee
Q 006121 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLY 647 (660)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~ 647 (660)
++.+++.++++|...+ | ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||.|++|+|+...+
T Consensus 476 y~~~~~~~~~~f~~~~---g--~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~ 550 (647)
T PTZ00237 476 FYKNDEKFKQLFSKFP---G--YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYD 550 (647)
T ss_pred eeCCHHHHHHHHhCCC---C--EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEc
Confidence 2226677777775422 3 9999999999999999999999999999999999999999999999999999998876
Q ss_pred cC-cceeeeecc
Q 006121 648 FH-KLELIFYFS 658 (660)
Q Consensus 648 ~~-~~~l~a~~~ 658 (660)
.. ++.+++|+.
T Consensus 551 ~~~g~~~~a~Vv 562 (647)
T PTZ00237 551 PDCYNVPIGLLV 562 (647)
T ss_pred CCCCCEEEEEEE
Confidence 54 456777753
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=614.83 Aligned_cols=517 Identities=21% Similarity=0.319 Sum_probs=407.9
Q ss_pred cHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEEec
Q 006121 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWRE 199 (660)
Q Consensus 120 ~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~ 199 (660)
+|+.+.+.+++++..||..+++. ..|.+++.++++.. ..+..+|+.++..|.+.++++++. +.+|+++|+++.+
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~~~ 75 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARR--IDWQTPPQRILDYS--NPPFARWFAGGRTNLCHNALDRHL--DERGEQLALVTVS 75 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHh--CCeecCCcccccCC--CCCcCccCCCCEeeHHHHHHHHHh--CcCCCCeEEEEEc
Confidence 46778889999999999999997 47999999987542 234578999999999999998765 6789999999854
Q ss_pred CCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHh
Q 006121 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (660)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~ 278 (660)
. +.+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++
T Consensus 76 ~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~ 153 (628)
T TIGR02316 76 S--ETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDD 153 (628)
T ss_pred C--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHh
Confidence 2 112345899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEeecceeecCccccchhhHhcc------CCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCcc
Q 006121 279 SKAKGIFTQDFILRGGRKFPLYSKVLGA------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (660)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
+++++||+++...+.++.++....+... ....++++....... ........+|+++...... ...+...
T Consensus 154 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~ 228 (628)
T TIGR02316 154 ATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM-RLIPGRDVDYAALRTQHED----AQVPVEW 228 (628)
T ss_pred cCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCccccHHHHhhcccc----CCCCcee
Confidence 9999999998766666655544433221 122344443221110 0111123456665443211 1112223
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhH-HHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEecC
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~ 430 (660)
..+++++||+|||||||+||||+++|++++ +........++++++|++++.++++|+.+. +.++.+|+.|++++++++
T Consensus 229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~ 308 (628)
T TIGR02316 229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308 (628)
T ss_pred cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence 467999999999999999999999999975 444455566789999999999999999986 678899999999999875
Q ss_pred ---CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccc
Q 006121 431 ---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (660)
Q Consensus 431 ---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (660)
.+++..++++|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++++.++ ..++|.||
T Consensus 309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~yG 387 (628)
T TIGR02316 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDNYW 387 (628)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEeccc
Confidence 3467899999999999999999999999987643 23457899999999999999999998887764 78999999
Q ss_pred ccccccccccCCcC---CCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEE-ec---cccCCccccc-Cccccc
Q 006121 506 GTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-FP---LYLGASDRLL-NADHEE 576 (660)
Q Consensus 506 ~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v-~~---~y~~~~~~~~-~~~~t~ 576 (660)
+||++..++..... .....+++|+|++|++++|+|+ +|+++|.|+. |||+| +| +|+. +|+ +++.+.
T Consensus 388 ~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~--Gel~v~gp~~~g~~~---~~~~~~~~~~ 462 (628)
T TIGR02316 388 QTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLS---TVWGDDARFL 462 (628)
T ss_pred ccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCc--EEEEEecCCCccccc---cccCChHHHH
Confidence 99998543332221 2334578999999999999997 7999999996 99999 44 4433 223 343333
Q ss_pred ccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeee
Q 006121 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIF 655 (660)
Q Consensus 577 ~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a 655 (660)
+.|.. ..+++||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|+...+.. +..+++
T Consensus 463 ~~~~~---~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~ 539 (628)
T TIGR02316 463 KTYWS---HFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVV 539 (628)
T ss_pred Hhhhh---cCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEE
Confidence 22211 11356999999999999999999999999999999999999999999999999999999877654 456667
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
|+.
T Consensus 540 ~vv 542 (628)
T TIGR02316 540 FAI 542 (628)
T ss_pred EEE
Confidence 653
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=613.99 Aligned_cols=523 Identities=22% Similarity=0.280 Sum_probs=405.6
Q ss_pred cHHHHHHHHhhCHHHHHHHHHhhcccceeccce--ecccCCC---CCCCCCCcCCCCccchhhhcccccCcCCCCCCcEE
Q 006121 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPK--CILDRTD---KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVA 194 (660)
Q Consensus 120 ~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~A 194 (660)
+|+.+.+.+++++..||..+.+.+ .|..++. ++++... ...+..+|+.++.+|.+.++++++. ...+|+++|
T Consensus 31 ~y~~~~~~s~~~~~~fw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~~~l~~~~-~~~~~~~~A 107 (666)
T PLN02654 31 QYMEMYKRSVDDPAGFWSDIASQF--YWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNV-EAGNGDKIA 107 (666)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhC--CeecCCCcceEeccCCCcccCCccccccCCCEeeHHHHHHHHhh-ccCCCCCEE
Confidence 468888999999999999999985 5777753 5553211 1123468999999999999998764 124899999
Q ss_pred EEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHH
Q 006121 195 IVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIA 273 (660)
Q Consensus 195 v~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~ 273 (660)
+++.+. +.+..+++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+++.++++++.
T Consensus 108 l~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~ 185 (666)
T PLN02654 108 IYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLA 185 (666)
T ss_pred EEEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHH
Confidence 998543 123346899999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeeEEEeecceeecCccccchhhHhccCC--------C-cEEEEcCCCCC--CCCC-CCCCCcchhhhhccCCC
Q 006121 274 TRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--------L-KAIVLPAIGND--VGIP-LREQDLSWKDFLSSVDY 341 (660)
Q Consensus 274 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~v~~~~~~--~~~~-~~~~~~~~~~~~~~~~~ 341 (660)
++++++++++||+++...+..+.++....+..... . .++........ .... .......|+++.....
T Consensus 186 ~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 264 (666)
T PLN02654 186 QRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYP- 264 (666)
T ss_pred HHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCC-
Confidence 99999999999999887766666554433322111 0 11111110000 0000 0012234555543211
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHH-HHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l 419 (660)
...+.....++|++||+|||||||+||||+++|++++. ........++++++|++++.++++|..+. +.++.+|
T Consensus 265 ----~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 340 (666)
T PLN02654 265 ----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPM 340 (666)
T ss_pred ----CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHH
Confidence 11122335679999999999999999999999999764 34445566889999999999999999886 5678999
Q ss_pred hcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhh
Q 006121 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (660)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~ 494 (660)
+.|++++++++. +++..++++|++++||+++++|++++.|.+... ....++++||.++++||+++++..+++.+.
T Consensus 341 ~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~ 420 (666)
T PLN02654 341 LNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNV 420 (666)
T ss_pred HcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999987653 234578999999999999999999999988
Q ss_pred CCC--CceeccccccccccccccCCc-CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCccccc-
Q 006121 495 AWY--NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL- 570 (660)
Q Consensus 495 ~~~--~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~- 570 (660)
++. +++.+.||+||+++..+...+ ..+..++++|+|++|++++|+|++|++++.|+. |||+|...+.+.+.+|+
T Consensus 421 ~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~--Gel~v~~~~p~~~~gy~~ 498 (666)
T PLN02654 421 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS--GYLCVKKSWPGAFRTLYG 498 (666)
T ss_pred hCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCc--eEEEEcCCCchhhhhhcC
Confidence 763 679999999999865443322 124567889999999999999999999998875 99999422111122223
Q ss_pred CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 571 ~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
+++.+.+.|.. ...+||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|+...+..
T Consensus 499 ~~~~~~~~~~~----~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ 574 (666)
T PLN02654 499 DHERYETTYFK----PFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVK 574 (666)
T ss_pred ChHHHHHhhhh----cCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCC
Confidence 55555544321 1123999999999999999999999999999999999999999999999999999999887654
Q ss_pred cceeeeecc
Q 006121 650 KLELIFYFS 658 (660)
Q Consensus 650 ~~~l~a~~~ 658 (660)
+..+++|+.
T Consensus 575 ge~~~a~Vv 583 (666)
T PLN02654 575 GQGIYAFVT 583 (666)
T ss_pred CeEEEEEEE
Confidence 456777764
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-69 Score=611.43 Aligned_cols=522 Identities=24% Similarity=0.356 Sum_probs=412.1
Q ss_pred CccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEE
Q 006121 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVW 197 (660)
Q Consensus 118 ~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~ 197 (660)
+.+|+.+.+.+++++..||..+.+. ...|.+++.++++.. ..+..+|+.++.+|.+++++++++ +++|+++|+++
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~ 78 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARE-LLDWFKPFTKVLDWS--FPPFYKWFVGGELNVSYNCVDRHL--EARPDKVAIIW 78 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh-cCceecCCceeecCC--CCCCCeeCCCCEEEHHHHHHHHhh--ccCCCCeEEEE
Confidence 3467888899999999999999987 357899998887643 234578999999999999998765 67999999998
Q ss_pred ecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHH
Q 006121 198 REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL 276 (660)
Q Consensus 198 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l 276 (660)
.+. +.+..+++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus 79 ~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l 156 (625)
T TIGR02188 79 EGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRI 156 (625)
T ss_pred EcC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHH
Confidence 654 224456899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCeeEEEeecceeecCccccchhhHhc---cCC---CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCC
Q 006121 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (660)
Q Consensus 277 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (660)
++++++++|+++...+.++..+....+.. ..+ ..++++...+.... ........|+++...... ....
T Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~ 230 (625)
T TIGR02188 157 NDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-WVEGRDVWWHDLMAKASA-----YCEP 230 (625)
T ss_pred HhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-ccccccccHHHHHhhcCC-----CCCc
Confidence 99999999999887766665554433322 222 12333332221110 001123456665543221 1223
Q ss_pred ccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHH-HhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEe
Q 006121 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (660)
Q Consensus 351 ~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~ 428 (660)
....+++++||+|||||||+||||+++|++++.... .....++++++|++++.++++|..+. +.++.+|+.|++++++
T Consensus 231 ~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~ 310 (625)
T TIGR02188 231 EPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMF 310 (625)
T ss_pred eecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEE
Confidence 345678999999999999999999999999764433 34445788999999999999999886 5688999999999998
Q ss_pred cCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCC--CCcee
Q 006121 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (660)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (660)
++. +++..+++.|++++||+++++|++++.|.+.... ...++++||.+++|||++++++.+++.+.++ +++++
T Consensus 311 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~ 390 (625)
T TIGR02188 311 EGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIV 390 (625)
T ss_pred CCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceE
Confidence 743 3788999999999999999999999999876432 3356889999999999999999999988775 37899
Q ss_pred ccccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCC-CCCCceeEEEEeccccCCccccc-Cccccccc
Q 006121 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGLFPLYLGASDRLL-NADHEEVY 578 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp-~G~~giGel~v~~~y~~~~~~~~-~~~~t~~~ 578 (660)
|.||+||+++.++..... .+.+++++|+|++|++++|+|++|++++ +|+. |||+|...+.+...+|+ +++.+.+.
T Consensus 391 ~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~--GeL~v~~p~p~~~~gy~~~~~~~~~~ 468 (625)
T TIGR02188 391 DTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEG--GYLVIKQPWPGMLRTIYGDHERFVDT 468 (625)
T ss_pred ecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCe--EEEEEccCCCcccccccCChHHHHHH
Confidence 999999998754433221 2345678999999999999999999999 8986 99999332111122233 44444443
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
|.. ....||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+++|+
T Consensus 469 ~~~----~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~v 544 (625)
T TIGR02188 469 YFS----PFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFV 544 (625)
T ss_pred Hhc----cCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEE
Confidence 321 1123999999999999999999999999999999999999999999999999999998876554 45677776
Q ss_pred c
Q 006121 658 S 658 (660)
Q Consensus 658 ~ 658 (660)
.
T Consensus 545 v 545 (625)
T TIGR02188 545 T 545 (625)
T ss_pred E
Confidence 4
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=605.94 Aligned_cols=549 Identities=26% Similarity=0.366 Sum_probs=417.3
Q ss_pred ccCCChhhhcccchHHHHHHhCCcccccccCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCC
Q 006121 85 YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHG 164 (660)
Q Consensus 85 ~~~~~~~~~~~~dl~~~~~~~~~~~~~~~y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 164 (660)
.|.|.++.....+|.-+....+.. |+..+.+|+.+.+.+++++..||..+.+.....|.+++.++++.. ..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~--~~~~ 77 (655)
T PRK03584 5 LWTPSAERIAASRMTAFIRWLAAR-----RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGR--RMPG 77 (655)
T ss_pred CCCCChhhcccchHHHHHHHHHHH-----hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCC--CCCC
Confidence 565555444445554333222111 222234568888999999999999999887678888888886542 2245
Q ss_pred CCcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCC
Q 006121 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s 243 (660)
.+|+.++.+|.++++++. .+|+++|+++.+.. +..+++||+||.++++++|++|++. +++||+|+|+++|+
T Consensus 78 ~~wf~~~~~n~~~~~~~~-----~~~~~~Al~~~~~~---~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~ 149 (655)
T PRK03584 78 ARWFPGARLNYAENLLRH-----RRDDRPAIIFRGED---GPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNI 149 (655)
T ss_pred CeeCCCCEeeHHHHhhcc-----CCCCCeEEEEECCC---CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Confidence 789999999999998862 46899999987541 3456899999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHh---ccCCC--cEEEEcCCC
Q 006121 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL---GAAPL--KAIVLPAIG 318 (660)
Q Consensus 244 ~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~v~~~~ 318 (660)
+++++++|||+++|++++|++|.++.+++.+++++++++++|+++......+.++....+. ...+. .++++...+
T Consensus 150 ~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 229 (655)
T PRK03584 150 PETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLG 229 (655)
T ss_pred HHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCC
Confidence 9999999999999999999999999999999999999999999987765555554444332 22222 334443222
Q ss_pred CCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhH-HHHHHhhHhcCCCCC
Q 006121 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKVG 397 (660)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~ 397 (660)
.............|++++..... .........+++++||+|||||||+||||+++|++++ +.+......+++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~ 305 (655)
T PRK03584 230 PAAAAAALPGALLWEDFLAPAEA----AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPG 305 (655)
T ss_pred CcccccccCCcccHHHHhhcccc----CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCC
Confidence 11111112234567776652211 1122234567999999999999999999999999975 445556667889999
Q ss_pred CEEEEecCccccchhhHHHHhhhcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccC
Q 006121 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTK 472 (660)
Q Consensus 398 ~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~ 472 (660)
|+++++++++|+.+. .++.+|+.|++++++++. .++..++++|++++||++.++|++++.|.+... ....++++
T Consensus 306 d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~s 384 (655)
T PRK03584 306 DRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSA 384 (655)
T ss_pred CEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhh
Confidence 999999999998654 367899999999998753 478899999999999999999999999986532 23457899
Q ss_pred ccEEEeecCCCChhhHHHHHhhCC-CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCC
Q 006121 473 IRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQP 551 (660)
Q Consensus 473 lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~ 551 (660)
||.+++|||++++++.+++.+.++ ++.+++.||+||++..+.......+...+++|+|++|++++|+|++|+++ .|+.
T Consensus 385 Lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~ 463 (655)
T PRK03584 385 LRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEV 463 (655)
T ss_pred eEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CCCc
Confidence 999999999999999999988874 57899999999987544433333445567899999999999999999999 7876
Q ss_pred ceeEEEEeccccCCcccccC-cccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHh
Q 006121 552 CVGEVGLFPLYLGASDRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFL 630 (660)
Q Consensus 552 giGel~v~~~y~~~~~~~~~-~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~ 630 (660)
|||+|.....+...+|++ ++.+ +|....+.....||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++
T Consensus 464 --GeL~v~gp~p~~~~gy~~~~~~~--~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~ 539 (655)
T PRK03584 464 --GELVCTKPFPSMPLGFWNDPDGS--RYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQ 539 (655)
T ss_pred --eEEEEccCCCCCcceeeCCCccc--hHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHH
Confidence 999993211111122333 3322 22211111112289999999999999999999999999999999999999999
Q ss_pred hcCCCCceeeEEEEEeec-Ccceeeeecc
Q 006121 631 SSPRSSFKCLHIYAWLYF-HKLELIFYFS 658 (660)
Q Consensus 631 L~~~~~V~~a~vv~~~~~-~~~~l~a~~~ 658 (660)
|.+||+|.+|+|+...+. .+..+++|+.
T Consensus 540 l~~~p~V~ea~vvg~~~~~~g~~~~a~vv 568 (655)
T PRK03584 540 VEALPEVLDSLVIGQEWPDGDVRMPLFVV 568 (655)
T ss_pred HHhCCCcceEEEEeeEcCCCCEEEEEEEE
Confidence 999999999999987763 4567888764
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-68 Score=605.28 Aligned_cols=515 Identities=25% Similarity=0.361 Sum_probs=404.9
Q ss_pred cHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEEec
Q 006121 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWRE 199 (660)
Q Consensus 120 ~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~ 199 (660)
+|..+.+.+++++..+|..+.+. ..|.+++.++++. ..+...|+.++..|.+.++++++. +++|+++|+++.+
T Consensus 18 ~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~---~~~~~~w~~~~~~n~~~~~l~~~~--~~~p~~~Al~~~~ 90 (637)
T PRK00174 18 QYKALYQESVEDPEGFWAEQAKR--LDWFKPFDTVLDW---NAPFIKWFEDGELNVSYNCLDRHL--KTRGDKVAIIWEG 90 (637)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHh--cCeecCCcccccC---CCCCCccCCCCEeEHHHHHHHHhh--ccCCCCeEEEEEC
Confidence 45777788999999999999877 4678888887764 245689999999999999998765 6789999999865
Q ss_pred CCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHh
Q 006121 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (660)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~ 278 (660)
. +++..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++
T Consensus 91 ~--~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~ 168 (637)
T PRK00174 91 D--DPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIID 168 (637)
T ss_pred C--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHh
Confidence 4 123456899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEeecceeecCccccchhhHhc---cCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccC
Q 006121 279 SKAKGIFTQDFILRGGRKFPLYSKVLG---AAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYN 353 (660)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
++++++|+++...+..+.++....+.. ..+. .++++...+..... .......|+++...... ..+....
T Consensus 169 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~ 242 (637)
T PRK00174 169 AGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDW-VEGRDLWWHELVAGASD-----ECEPEPM 242 (637)
T ss_pred cCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCc-CCCCcccHHHHHhhcCC-----CCCcccc
Confidence 999999998876555554444333222 1221 23333222111100 01123456665543221 1222345
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHH-HhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEecCC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGS 431 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~ 431 (660)
.+++++||+|||||||+||||+++|++++.... .....++++++|++++.++++|..+. +.++.+|++|+++++.++.
T Consensus 243 ~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~ 322 (637)
T PRK00174 243 DAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGV 322 (637)
T ss_pred CCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCC
Confidence 678999999999999999999999999865443 34445788999999999999999887 5788999999999998642
Q ss_pred ---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCC--CCceeccc
Q 006121 432 ---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESC 504 (660)
Q Consensus 432 ---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~n~Y 504 (660)
+++..+++.|++++||++.++|++++.|++.... ...++++||.+++|||++++++.+++.+.++ .++++|.|
T Consensus 323 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~Y 402 (637)
T PRK00174 323 PNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTW 402 (637)
T ss_pred CCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecc
Confidence 4788999999999999999999999999876432 2356789999999999999999998888765 37899999
Q ss_pred cccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe---ccccCCccccc-Ccccccccc
Q 006121 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---PLYLGASDRLL-NADHEEVYF 579 (660)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~---~~y~~~~~~~~-~~~~t~~~f 579 (660)
|+||++...+..... .....+++|+|++|++++|+|++|+++|.|+. |||+|. ++... +|+ +++.+.+.|
T Consensus 403 G~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~--Gel~v~g~~p~~~~---gy~~~~~~~~~~~ 477 (637)
T PRK00174 403 WQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEG--GNLVIKDPWPGMMR---TIYGDHERFVKTY 477 (637)
T ss_pred cccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCc--EEEEEcCCCCcccc---cccCCHHHHHHhh
Confidence 999998754432221 23345789999999999999999999999997 999993 23332 223 444443333
Q ss_pred cccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 580 ~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
. ....+||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+++|+.
T Consensus 478 ~----~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv 553 (637)
T PRK00174 478 F----STFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVT 553 (637)
T ss_pred h----cCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEE
Confidence 2 11234999999999999999999999999999999999999999999999999999998876544 556778764
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=603.00 Aligned_cols=519 Identities=18% Similarity=0.275 Sum_probs=405.6
Q ss_pred ccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEEe
Q 006121 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (660)
Q Consensus 119 ~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~ 198 (660)
.+|+.+.+.+++++..||..+.+. ..|.+++.++++.. ..+..+|+.++..|.+.++++++. +.+|+++|+++.
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~A~~~~ 75 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARR--IDWQTPFTQVLDYS--NPPFARWFVGGRTNLCHNAVDRHL--AKRPEQLALIAV 75 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHh--CCcccCchhhccCC--CCCcCccCCCcEeeHHHHHHHHhh--ccCCCCeEEEEE
Confidence 467889999999999999999996 47999999987542 234578999999999999998765 678999999985
Q ss_pred cCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Q 006121 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (660)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~ 277 (660)
+. ..+..+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 76 ~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~ 153 (629)
T PRK10524 76 ST--ETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARID 153 (629)
T ss_pred cC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHH
Confidence 42 112346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeeEEEeecceeecCccccchhhHhc---c---CCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCc
Q 006121 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---A---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351 (660)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (660)
+++++++|+++...+.++.++....+.. . ....++++....... .........|.++...... ...+..
T Consensus 154 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~ 228 (629)
T PRK10524 154 DAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-ARVAGRDVDYATLRAQHLG----ARVPVE 228 (629)
T ss_pred hcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCCcccHHHHHhcCCC----CCCCce
Confidence 9999999998876666665544333222 1 122334443211110 0111223456655443211 111122
Q ss_pred cCCCCCeEEEEecCCCCCCcceEEecchhhHHH-HHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEec
Q 006121 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (660)
Q Consensus 352 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~ 429 (660)
...+++++||+|||||||+||||+++|++++.. .......++++++|++++.++++|..+. +.++.+|+.|+++++++
T Consensus 229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 308 (629)
T PRK10524 229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYE 308 (629)
T ss_pred eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEEC
Confidence 346789999999999999999999999997543 3334455788999999999999999886 67889999999999987
Q ss_pred CC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 430 GS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 430 ~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+. +++..++++|+++++|+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ ++++|.|
T Consensus 309 g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~~Y 387 (629)
T PRK10524 309 GLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVIDNY 387 (629)
T ss_pred CCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEecc
Confidence 53 467899999999999999999999999887543 23456899999999999999999998887764 7899999
Q ss_pred cccccccccccCCc---CCCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEE-ec---cccCCcccccCccccc
Q 006121 505 GGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-FP---LYLGASDRLLNADHEE 576 (660)
Q Consensus 505 G~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v-~~---~y~~~~~~~~~~~~t~ 576 (660)
|+||++..+..... ......+++|+|++|++++|+|+ +|+++|.|+. |||+| +| +++.+ ++.+++.+.
T Consensus 388 G~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~--Gel~i~gp~~~~~~~~--~~~~~~~~~ 463 (629)
T PRK10524 388 WQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEK--GVLVIEGPLPPGCMQT--VWGDDDRFV 463 (629)
T ss_pred ccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCc--EEEEEcCCCChhhcCC--ccCChHHHH
Confidence 99999843322221 12344678999999999999998 9999999996 99999 43 44442 122444333
Q ss_pred ccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeee
Q 006121 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIF 655 (660)
Q Consensus 577 ~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a 655 (660)
+.|-.. .+.+||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+++
T Consensus 464 ~~~~~~---~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~ 540 (629)
T PRK10524 464 KTYWSL---FGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVA 540 (629)
T ss_pred Hhhhcc---CCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEE
Confidence 222111 1345999999999999999999999999999999999999999999999999999998776553 455666
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
|+.
T Consensus 541 ~vv 543 (629)
T PRK10524 541 FVV 543 (629)
T ss_pred EEE
Confidence 653
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-67 Score=596.12 Aligned_cols=546 Identities=24% Similarity=0.342 Sum_probs=415.2
Q ss_pred cccCCChhhhcccchHHHHHHhCCcccccccCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCC
Q 006121 84 LYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH 163 (660)
Q Consensus 84 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 163 (660)
..|.|.+.......|.-+.+..+.. |...+.+|+-+.+.+++++..||..+++.....|..++.++++... ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (652)
T TIGR01217 5 PLWQPDAQRIAQARMTRFQAWAGEH-----HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRT--MP 77 (652)
T ss_pred CCCCCChhhcccchHHHHHHHHHHh-----hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCCC--CC
Confidence 4676665544445544443322221 2223345788899999999999999999877899999999986522 23
Q ss_pred CCCcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCC
Q 006121 164 GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (660)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~ 242 (660)
..+|+.++..|.++++++. .++++|+++.+.. +..+++||+||.++++++|+.|++. +++||+|+|+++|
T Consensus 78 ~~~wf~~~~~n~~~~~~~~------~~~~~a~~~~~~~---~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n 148 (652)
T TIGR01217 78 GAQWFPGARLNYAENLLRA------AGTEPALLYVDET---HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148 (652)
T ss_pred CCEECCCCeeeHHHHHhcc------CCCCeEEEEECCC---CCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 4789999999999998862 3689999987541 3456899999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhc---cCCC--cEEEEcCC
Q 006121 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAPL--KAIVLPAI 317 (660)
Q Consensus 243 s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~v~~~ 317 (660)
++++++++|||+++|++++|++|.++++++.++++++++++||+++.+.+.++..+....+.+ ..+. .++++...
T Consensus 149 ~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~ 228 (652)
T TIGR01217 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYL 228 (652)
T ss_pred CHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCC
Confidence 999999999999999999999999999999999999999999999887766666555444432 2221 23333322
Q ss_pred CCCC-CCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhH-HHHHHhhHhcCCC
Q 006121 318 GNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLK 395 (660)
Q Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~ 395 (660)
+... ......+...|+++...... .........++++++|+|||||||+||||+++|++++ +........++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 304 (652)
T TIGR01217 229 GPRETEAPKIDGALDLEDFTAAAQA----AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLG 304 (652)
T ss_pred CCcccccccccCcccHHHHHhcccC----CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCC
Confidence 1100 00011234567776543211 0111223456899999999999999999999999965 4445555567899
Q ss_pred CCCEEEEecCccccchhhHHHHhhhcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCc
Q 006121 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDW 470 (660)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l 470 (660)
++|+++++++++|+.+.+ ++.+|+.|++++++++. +++..++++|++++||++..+|++++.|.+... ....++
T Consensus 305 ~~d~~~~~~~~~~~~~~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l 383 (652)
T TIGR01217 305 PGDRLFYYTTTGWMMWNW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDL 383 (652)
T ss_pred CCcEEEEeCCcchhhhHH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCCh
Confidence 999999999999986433 56899999999999743 367899999999999999999998888765422 234678
Q ss_pred cCccEEEeecCCCChhhHHHHHhhCC-CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCC
Q 006121 471 TKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD 549 (660)
Q Consensus 471 ~~lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G 549 (660)
++||.+++|||++++++.+++.+.++ +..+.+.||+||++.++.......+...+++|.|.+|++++|+|++|++++ |
T Consensus 384 ~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~-g 462 (652)
T TIGR01217 384 SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT-G 462 (652)
T ss_pred hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCCC-C
Confidence 99999999999999999999887764 356789999999865443333333445678999999999999999999994 8
Q ss_pred CCceeEEEEeccccCCccccc-Cccccc---ccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecch
Q 006121 550 QPCVGEVGLFPLYLGASDRLL-NADHEE---VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLL 625 (660)
Q Consensus 550 ~~giGel~v~~~y~~~~~~~~-~~~~t~---~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~ 625 (660)
+. |||++.....+.+.+|+ +++.+. .+|.. ..+||+|||+|++|+||+|+|+||.||+||++|+||+|.
T Consensus 463 ~~--GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~-----~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~ 535 (652)
T TIGR01217 463 EV--GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDT-----YPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSA 535 (652)
T ss_pred Cc--cEEEEecCCCccccceeCCCccchhHHhhhcC-----CCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHH
Confidence 75 99999322111122333 343332 33332 123899999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 626 PLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 626 eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
|||++|.+||+|.+|+|+...+.. +..+++|+.
T Consensus 536 EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv 569 (652)
T TIGR01217 536 EIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVH 569 (652)
T ss_pred HHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEE
Confidence 999999999999999999877654 456777764
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-65 Score=547.14 Aligned_cols=440 Identities=23% Similarity=0.228 Sum_probs=363.6
Q ss_pred CCCCc-EEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc---cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 188 KEDNT-VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM---FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 188 ~~pd~-~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~---v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
..+++ +++++.... .+.+||+|+..++.|+|.+|.+. +++||+|+|++||++++++.++||+.+|+++.|+
T Consensus 28 ~~~~~~~~~i~~~~~-----g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~ 102 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSD-----GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPL 102 (537)
T ss_pred ccccCcceEEEecCC-----CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccccc
Confidence 44444 788877620 12999999999999999999975 7889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcc-hhhhhccCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLS-WKDFLSSVDYH 342 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (660)
+|.+.+.++.+.++++++++++++.... +............++++................. +..+......
T Consensus 103 Np~~~~~ei~~~~~~s~~kiif~d~~~~------~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (537)
T KOG1176|consen 103 NPRLTASEIAKQLKDSKPKLIFVDEDFY------DKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP- 175 (537)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEcCchH------HHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC-
Confidence 9999999999999999999999998643 3333333333344555443311111111111111 3333222211
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcC
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 422 (660)
.. ....+.+|++.|+|||||||.||||++||++++...........++..++.++.+|+.|..|++.++.++++|
T Consensus 176 ----~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~ 250 (537)
T KOG1176|consen 176 ----DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAG 250 (537)
T ss_pred ----cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhC
Confidence 11 4556779999999999999999999999999988877666666777899999999999999999888877777
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
++.++....++++.+++.|++|+||+++++|.++..|++.+....++++++|.+.+||.++++++.++++++++...+.+
T Consensus 251 ~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q 330 (537)
T KOG1176|consen 251 GTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQ 330 (537)
T ss_pred CceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEE
Confidence 77777776789999999999999999999999999999988677789999999999999999999999999999788999
Q ss_pred cccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccccc
Q 006121 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEV 577 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~ 577 (660)
+||+||+++..+........+++++|+++++.+..|+++.|+.+++++. ||||+ + .||++ ||+.|++
T Consensus 331 ~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~--GEI~vrg~~imkGY~~------NpeaT~~ 402 (537)
T KOG1176|consen 331 GYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQT--GEICVRGPQVMKGYLK------NPEATKE 402 (537)
T ss_pred eeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCc--eEEEEECcccchhhcC------ChHHHHh
Confidence 9999999965444333333578899999999999999999999999997 99999 3 45555 8999999
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|..+. ||+|||+|++|+||+|+|++|++|+||.+|+.|+|.|||++|..||.|.||+|++..++. ++...||
T Consensus 403 ~~~~~G------W~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~ 476 (537)
T KOG1176|consen 403 AFDDDG------WFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAF 476 (537)
T ss_pred hcccCC------ccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEE
Confidence 998643 999999999999999999999999999999999999999999999999999999988765 4556666
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 477 VV 478 (537)
T KOG1176|consen 477 VV 478 (537)
T ss_pred EE
Confidence 54
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-66 Score=588.42 Aligned_cols=548 Identities=20% Similarity=0.194 Sum_probs=436.9
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCCC----c---ccC
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP----L---YWF 87 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~----~---~~~ 87 (660)
....+....+|.++++++++....+ +||++||++ +++.+.+.|..+ .|+|+++|++++...... . .+.
T Consensus 70 lr~~~~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~-l~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (642)
T COG1020 70 LRLDISGRVTFAELLARLRELALGALEHQDLPGEQ-LVERLGRERSLS---EPLFDVVFVLQNGPTAGLKLPGLRVEELG 145 (642)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHhhccCCCHHH-HHHHHhhhccCC---CCceeeEEEecCccccccccccccccccc
Confidence 3455556677999999998887777 899999999 999999988855 667999999998655431 1 111
Q ss_pred CChhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCCCCC
Q 006121 88 PSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHG 164 (660)
Q Consensus 88 ~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~ 164 (660)
.. ....++|+.+...+. ++...+ |.+ ++|++.+++++..+|..++..+..++......+ +...+.
T Consensus 146 ~~-~~~~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~---- 213 (642)
T COG1020 146 IE-TPAAKLDLALAVVEG--GLRLSFDYAR-----ELFDAETIERELRHFLQLLAALADAPRTSLSALPLLLPSER---- 213 (642)
T ss_pred cc-CcccccceEEEEEeC--ceEEEEEeec-----ccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCCHHHH----
Confidence 22 456788888887766 778888 998 999999999999999999999877776333332 222222
Q ss_pred CCcCCCCccchhhhccc--ccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcC
Q 006121 165 GTWLPGSVLNIAECCLL--PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~l~--~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~ 241 (660)
..|+......+...+++ +..++.+.|+++|+++.+. ++||+||+++++++|+.|.+. ++++++|+++++
T Consensus 214 ~~~~~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~ 285 (642)
T COG1020 214 EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISLGVGPGETVAILAD 285 (642)
T ss_pred hhccccccCCCccchHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcC
Confidence 33662222211112222 3456789999999999877 999999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCC
Q 006121 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321 (660)
Q Consensus 242 ~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 321 (660)
++++++++++|++|+|++|+|+||.+|.+|+.+++++++++.+++...........+.
T Consensus 286 rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------- 343 (642)
T COG1020 286 RSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG---------------------- 343 (642)
T ss_pred CCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999998432110000000
Q ss_pred CCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEE
Q 006121 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (660)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l 401 (660)
+..+........ .........+++++|++|||||||+||||+++|+++++.+.+....+.++.+|+++
T Consensus 344 --------~~~~~~~~~~~~----~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l 411 (642)
T COG1020 344 --------LALDDALSEIPD----TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVL 411 (642)
T ss_pred --------cccccccccCCc----cCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEe
Confidence 000000000000 00001234568999999999999999999999999999889998889999999999
Q ss_pred EecCccccchhhHHHHhhhcCcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCC--CCCccCccEEE
Q 006121 402 WPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFA 477 (660)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~ 477 (660)
...+++||.+.+++|.++++|+++++.+.. .++..+.+.++++++|++..+|+++..++...... ......+|.++
T Consensus 412 ~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~ 491 (642)
T COG1020 412 ALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLL 491 (642)
T ss_pred ecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEE
Confidence 999999999999999999999999999753 47889999999999999999999999998762221 12223599999
Q ss_pred eecCCCChhhHHHHHhhCC-CCceeccccccccccccccCCcCCCCc-ccccCcCCCCceEEEEcCCCCcCCCCCCceeE
Q 006121 478 STGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQA-FGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555 (660)
Q Consensus 478 ~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~-~~~iG~p~~~~~~~vld~~~~~vp~G~~giGe 555 (660)
+|||+++..+...+....+ ...+.|.||+||+++.+.......... ..+||+|++|++++|+|+.++++|.|++ ||
T Consensus 492 ~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~--ge 569 (642)
T COG1020 492 SGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP--GE 569 (642)
T ss_pred EcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCC--ee
Confidence 9999999999888776654 467999999999776444333222111 5699999999999999999999999998 99
Q ss_pred EEE-----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHh
Q 006121 556 VGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFL 630 (660)
Q Consensus 556 l~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~ 630 (660)
++| +.||++ ++++|+++|..+ |+|+|||++||++||.++|+||.|+|||++|+|||++|||++
T Consensus 570 l~i~g~~~a~gy~~------~p~lt~~~f~~~------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~ 637 (642)
T COG1020 570 LYIAGLGLALGYLN------RPDLTAERFIAL------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAA 637 (642)
T ss_pred eEECCcchhhhhcC------ChhhhHHHhhhc------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHH
Confidence 999 456665 888999999987 499999999999999999999999999999999999999999
Q ss_pred hcCCC
Q 006121 631 SSPRS 635 (660)
Q Consensus 631 L~~~~ 635 (660)
+.++|
T Consensus 638 l~~~~ 642 (642)
T COG1020 638 LAEQP 642 (642)
T ss_pred HhcCC
Confidence 99876
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=528.33 Aligned_cols=529 Identities=30% Similarity=0.405 Sum_probs=430.1
Q ss_pred cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcE
Q 006121 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (660)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (660)
|...+.+|..|.+.++++.+.+|..+++........ . .............+|+.+...|.++++++++.... .++.+
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~-~~~~~ 82 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWKFPW-P-RCNKDENKGNPFTKWFPGAFLNACYNCLDRHIKEK-GGDKV 82 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhcccCc-c-ccccccccCCCCccccccchhhhhHhhhhhhhhhc-CCCCc
Confidence 556677889999999999999999999986422222 2 22222223446678999999999999999875445 79999
Q ss_pred EEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHH
Q 006121 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (660)
Q Consensus 194 Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l 272 (660)
|+++.+.. +++...+||.||.+++.++|..|.+. +++||+|+++||+.+++++++|||.++|++.+++...+++..+
T Consensus 83 a~~~~~~~--~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l 160 (626)
T KOG1175|consen 83 AIIFEGNE--GGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKEL 160 (626)
T ss_pred EEEEEecC--CCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHH
Confidence 99998652 33334499999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCcc
Q 006121 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (660)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
...+.++++++|++.+...+..+.++......++......................++.|+.+...... ..++..
T Consensus 161 ~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~-----~~~~~~ 235 (626)
T KOG1175|consen 161 LDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP-----EHPCVP 235 (626)
T ss_pred HHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC-----CCCcee
Confidence 999999999999999999999998888777666543322111110000000111225677777655443 223566
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhh-HHHHHHhhHhcCCCCCCEEEEecCccccchhhH-HHHhhhcCcEEEEecC
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG 430 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~lv~~~~ 430 (660)
.+.+|+.+|+|||||||.||||.+++.+. +..+......++++++|++++++.++|+.+.+. .+++|++|+|+++.++
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g 315 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG 315 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence 77899999999999999999999999885 556666677789999999999999999999865 6779999999999987
Q ss_pred CC-ChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccccc
Q 006121 431 SP-LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (660)
Q Consensus 431 ~~-~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (660)
.+ ++..+++.+.+++||++++.|++++.|.+.... ..+++++||.+.++||++.++..+|+.+.....+|++.||+|
T Consensus 316 ~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 316 PPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred CCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 66 899999999999999999999999988766443 344457899999999999999999999988644799999999
Q ss_pred ccccccccCCcCC-CCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEecccc-CCcccccCccc--ccccccccc
Q 006121 508 ELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADH--EEVYFRGMP 583 (660)
Q Consensus 508 E~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~-~~~~~~~~~~~--t~~~f~~~p 583 (660)
|++..++...... +.++++.|.|.++..+.|+|++|++++.+. |.|+|++.+..+ +.+..++++.. ...||.+.|
T Consensus 396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p 474 (626)
T KOG1175|consen 396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP 474 (626)
T ss_pred ccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence 9998877777666 789999999999999999999999999975 469999954444 44444444432 444555444
Q ss_pred cCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 584 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
++|.|||.+++|+||+++++||.||.|+++|+|+.+.|||++|.+||.|.|++||...++- ++.+.+|+.
T Consensus 475 -----g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvv 545 (626)
T KOG1175|consen 475 -----GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVV 545 (626)
T ss_pred -----ceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEE
Confidence 3999999999999999999999999999999999999999999999999999999987654 456777754
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=500.29 Aligned_cols=448 Identities=19% Similarity=0.195 Sum_probs=369.1
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+++.||+.|+++...+ .++||+|+.+.++++|+.|+.. +++||||+|..||+.+|+.++|||.++|.+.++++
T Consensus 60 t~~v~dkea~Vf~~eg------~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~N 133 (596)
T KOG1177|consen 60 TERVPDKEAAVFDHEG------IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLN 133 (596)
T ss_pred hhccCcceEEEEeecc------chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccC
Confidence 4788999999886552 3799999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhh----Hhcc---------CCCcEEEEcCCCCCCCCCCCCCCcc
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK----VLGA---------APLKAIVLPAIGNDVGIPLREQDLS 331 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~----~~~~---------~~~~~~~v~~~~~~~~~~~~~~~~~ 331 (660)
|+|+.+++++.|+..+++++++...+.- ......+.+ +... ++....++..+++ ....+...
T Consensus 134 P~Yq~~elr~~L~k~~~k~l~~p~~~k~-~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed----~~~~Ga~~ 208 (596)
T KOG1177|consen 134 PAYQSEELRYVLKKVGCKALFAPPQFKT-QNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED----HPLPGAFL 208 (596)
T ss_pred cccccHHHHHHHhhcCeEEEEccchhhh-chHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC----CcCCCcee
Confidence 9999999999999999999999875421 100111111 1111 2223333322211 11245667
Q ss_pred hhhhhccCCCCCCC-CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccc
Q 006121 332 WKDFLSSVDYHPRP-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVM 410 (660)
Q Consensus 332 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (660)
+++++...+..... .........|++++.|.|||||||.|||+.+||.|++|+......+++++..+|+++..|+.|.+
T Consensus 209 ~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~ 288 (596)
T KOG1177|consen 209 LSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCF 288 (596)
T ss_pred hHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHH
Confidence 77777665531110 11112345789999999999999999999999999999999999999999999999999999999
Q ss_pred hh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHH
Q 006121 411 GP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDL 489 (660)
Q Consensus 411 ~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~ 489 (660)
+. ..++.+|+.|+|+|++...+++...++.|+++++|.++.+|+++..|++.......+++++|.++.||+++|+++.+
T Consensus 289 G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk 368 (596)
T KOG1177|consen 289 GCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLK 368 (596)
T ss_pred HHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHH
Confidence 95 67899999999999998899999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHhhCCCCceeccccccccccccccCCcCCC--CcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccc
Q 006121 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQP--QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLY 562 (660)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~--~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y 562 (660)
.+.....-..+...||.||++...+.....++ +...++|+.+++.+..|+|.+|.++|.|++ |||++ ..+|
T Consensus 369 ~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~--Gel~iRGY~tMl~Y 446 (596)
T KOG1177|consen 369 LIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTK--GELLIRGYSTMLGY 446 (596)
T ss_pred HHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCC--ceEEEEechhheee
Confidence 88876543358899999999975544433322 334589999999999999999999999998 99999 3456
Q ss_pred cCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEE
Q 006121 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHI 642 (660)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~v 642 (660)
|+ .++.|.+.- ..+|||+|||+|++|++|+++++||.||+|+.+|.+|+|.|||+.|.+||.|++|.|
T Consensus 447 wg------~~~kT~eti------~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~V 514 (596)
T KOG1177|consen 447 WG------EEEKTKETI------GNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHV 514 (596)
T ss_pred cC------Ccccchhhc------ccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEE
Confidence 65 445554433 356799999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecC-cceeeeecc
Q 006121 643 YAWLYFH-KLELIFYFS 658 (660)
Q Consensus 643 v~~~~~~-~~~l~a~~~ 658 (660)
|...+.. +++++|++.
T Consensus 515 VGV~D~R~GE~VCA~vR 531 (596)
T KOG1177|consen 515 VGVPDERLGEEVCACVR 531 (596)
T ss_pred EccCCCcccceEEEEEE
Confidence 9877654 667777753
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=548.64 Aligned_cols=438 Identities=21% Similarity=0.206 Sum_probs=357.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+..+|+++|+++.+..+ ++||+||+++++++|++|++. |++||+|+|+++|+++++++++||+++|++++||+
T Consensus 21 a~~~~~~~a~~~~~~~~------~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln 94 (534)
T COG0318 21 ARRNPDRPALIFLGRGG------RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLN 94 (534)
T ss_pred HHhCCCceEEEEcCCCc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecC
Confidence 47899999999988710 399999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.+..+++.++++++++++++++..+. +....+....+....+......... ...+++++......
T Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--- 160 (534)
T COG0318 95 PRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPVVLVVLLVGDADDR-----LPITLEALAAEGPG--- 160 (534)
T ss_pred cccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCcceEEEeccccccc-----ccccHHHHhhccCC---
Confidence 999999999999999999999997522 2222222222222222211111000 00234444322211
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC--CCCCCEEEEecCccccchhhH-HHHhhhc
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSFLN 421 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~-~~~~l~~ 421 (660)
.........++++|+++|||||||.||||++||+|+..+.......+. ++++|++++.+|++|+.++.. ++.+++.
T Consensus 161 -~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~ 239 (534)
T COG0318 161 -PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLG 239 (534)
T ss_pred -cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHc
Confidence 111112267899999999999999999999999999988888878888 899999999999999999975 4455999
Q ss_pred CcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccC-ccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 422 GATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 422 G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~-lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
|+++++.++ .+++..++..+.++++|++.++|+++..|+........++++ ||.+++||+++++++.++++++++..+
T Consensus 240 G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~ 319 (534)
T COG0318 240 GGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIA 319 (534)
T ss_pred CCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCc
Confidence 999999875 578999999999999999999999999999887766666665 999999999999999999999987668
Q ss_pred eeccccccccccccccCCcCC-CCcccccCcCCCCceEEEEcCCCC-cCCCCCCceeEEEE-e----ccccCCcccccCc
Q 006121 500 IIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGV-PYPDDQPCVGEVGL-F----PLYLGASDRLLNA 572 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~-~vp~G~~giGel~v-~----~~y~~~~~~~~~~ 572 (660)
+++.||+||++..++...... ....+.+|+|+++++++|+|+++. ++| |.. |||+| + .||++ ++
T Consensus 320 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~v--Gei~irgp~v~~GY~~------~p 390 (534)
T COG0318 320 ILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEV--GEIWVRGPNVMKGYWN------RP 390 (534)
T ss_pred eEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCc--eEEEEECchhhhhhcC------Ch
Confidence 999999999997555544433 235667899999999999997664 666 874 99999 3 45555 67
Q ss_pred ccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccc
Q 006121 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKL 651 (660)
Q Consensus 573 ~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~ 651 (660)
+.|++.|.. ++||+|||+|++|+||+|+|+||.+|+||++|++|+|.|||.+|.+||.|.+|+|+...+. .++
T Consensus 391 e~t~~~f~~------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge 464 (534)
T COG0318 391 EATAEAFDE------DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGE 464 (534)
T ss_pred HHHHHhhcc------CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCc
Confidence 888877764 3499999999999999999999999999999999999999999999999999999998876 577
Q ss_pred eeeeeccc
Q 006121 652 ELIFYFSQ 659 (660)
Q Consensus 652 ~l~a~~~~ 659 (660)
.++++++.
T Consensus 465 ~~~a~v~~ 472 (534)
T COG0318 465 RVVAVVVL 472 (534)
T ss_pred eEEEEEEE
Confidence 78888753
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=565.52 Aligned_cols=444 Identities=15% Similarity=0.149 Sum_probs=334.3
Q ss_pred cCCCCCCcEEEEEecC-CCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+++++|+++|+.+.+. .+..+.+..+||+||+++++++|++|++. +++||+|+|+++|+++|++++|||+++|+++||
T Consensus 54 ~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vp 133 (666)
T PLN02614 54 SVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVP 133 (666)
T ss_pred HHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEE
Confidence 3478999999986421 00112345699999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC------CcEEEEcCCCCCCC---CCCCCCCcchh
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP------LKAIVLPAIGNDVG---IPLREQDLSWK 333 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~~~~~~~~~ 333 (660)
++|.++++++.+++++++++++|+++... ..+....+ ..++.+........ ........+++
T Consensus 134 l~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 204 (666)
T PLN02614 134 LYDTLGAGAVEFIISHSEVSIVFVEEKKI---------SELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD 204 (666)
T ss_pred ecCCCCHHHHHHHHhccCCCEEEECHHHH---------HHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence 99999999999999999999999986421 11211111 11222211000000 00001124566
Q ss_pred hhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhc-----CCCCCCEEEEecCccc
Q 006121 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKVGDVYCWPTNLGW 408 (660)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 408 (660)
+++..... . ........++|+|+|+|||||||.||||++||+|++..+.+....+ +++++|++++++|++|
T Consensus 205 ~~~~~~~~--~--~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 280 (666)
T PLN02614 205 EFLKLGEG--K--QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280 (666)
T ss_pred HHHhhccc--C--CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHH
Confidence 66543221 0 0111234679999999999999999999999999988776554433 5788999999999999
Q ss_pred cchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC-----------------------
Q 006121 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----------------------- 465 (660)
Q Consensus 409 ~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~----------------------- 465 (660)
.++....+.+++.|+++++.+ .++..+++.|+++++|+++++|++++.|.+....
T Consensus 281 ~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 358 (666)
T PLN02614 281 IFDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGN 358 (666)
T ss_pred HHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 888755567788999999875 4788999999999999999999999987642100
Q ss_pred --------CCC-------------Cc-cCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCc
Q 006121 466 --------EGL-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523 (660)
Q Consensus 466 --------~~~-------------~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 523 (660)
... .+ ++||.+++||+++++.+ .++...+++++++|+||+||+++..+...+.....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 437 (666)
T PLN02614 359 MKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDM 437 (666)
T ss_pred HHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccccCCc
Confidence 000 01 58999999999999865 55666666688999999999976433322222234
Q ss_pred ccccCcCCCCceEEEEc-CC--CCcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEE
Q 006121 524 FGAFSTATMTAGLVILD-EC--GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599 (660)
Q Consensus 524 ~~~iG~p~~~~~~~vld-~~--~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~ 599 (660)
.+++|+|+||++++|+| ++ ++++|.|+. |||+| +++.+.+ ||.+++.|++.|. + | ||+|||+|++
T Consensus 438 ~gsvG~p~pg~evki~d~~~~~~~~~~~g~~--GEl~vrGp~v~~G--Y~~~pe~T~~~f~-d----G--w~~TGDlg~~ 506 (666)
T PLN02614 438 LGTVGPPVPNVDIRLESVPEMEYDALASTPR--GEICIRGKTLFSG--YYKREDLTKEVLI-D----G--WLHTGDVGEW 506 (666)
T ss_pred CCcccCcCCceEEEEeeecccCcccCCCCCC--ceEEEcCCccccc--ccCCHHHhhhhhc-c----C--CcccceEEEE
Confidence 67999999999999998 33 478999986 99999 4433322 2237888998884 2 3 9999999999
Q ss_pred ecCceEEEEeccCCcccc-CceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeec
Q 006121 600 TVGGYIIVQGRADDTMNL-GGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYF 657 (660)
Q Consensus 600 ~~dG~l~~~GR~dd~iki-~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~ 657 (660)
|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+++|+... ....++|.+
T Consensus 507 d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~--~~~~l~alv 563 (666)
T PLN02614 507 QPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNS--FESFLVAIA 563 (666)
T ss_pred cCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecC--CcceEEEEE
Confidence 999999999999999996 69999999999999999999999888643 223455543
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=551.98 Aligned_cols=418 Identities=18% Similarity=0.179 Sum_probs=332.2
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
.++++|+++|+.+.+.. ++||+||.++++++|++|.+. +||+|+|+++|++++++++|||+++|++++||+
T Consensus 28 ~~~~~p~~~a~~~~~~~-------~~Ty~el~~~~~~lA~~L~~~--~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 98 (539)
T PRK06334 28 LCSEMTTATVCWDEQLG-------KLSYNQVRKAVIALATKVSKY--PDQHIGIMMPASAGAYIAYFATLLSGKIPVMIN 98 (539)
T ss_pred HHHhCCCceEEEeCCCC-------cccHHHHHHHHHHHHHHHhhc--cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecC
Confidence 44789999999876531 899999999999999999874 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc---CCCcEEEEcCCCCCCCCCCCCCCcchhhhhccC--
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV-- 339 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-- 339 (660)
|.++.+++.+++++++++++++++.... .+...... .+...+.+.... ....+.+.....
T Consensus 99 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~ 163 (539)
T PRK06334 99 WSQGLREVTACANLVGVTHVLTSKQLMQ------HLAQTHGEDAEYPFSLIYMEEVR---------KELSFWEKCRIGIY 163 (539)
T ss_pred cccchHHHHHHHHHcCCCEEEehHHHHH------HHhhhhhccccccccEEEEehhh---------hhccHHHhhhhhhh
Confidence 9999999999999999999999875321 11111110 111222221100 000111110000
Q ss_pred ---CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHH
Q 006121 340 ---DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (660)
Q Consensus 340 ---~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 415 (660)
...............++++++|+|||||||+||||+++|+++.....+....++++++|++++..|++|.+++ ..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 243 (539)
T PRK06334 164 MSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCT 243 (539)
T ss_pred hcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHH
Confidence 0000000011123567999999999999999999999999999888777778889999999999999999887 457
Q ss_pred HHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhC
Q 006121 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (660)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 495 (660)
+.++..|+++++.+..+++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++.+++.+.+
T Consensus 244 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 323 (539)
T PRK06334 244 LFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTF 323 (539)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHC
Confidence 88999999999976567899999999999999999999999999876544556789999999999999999999999888
Q ss_pred CCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEE-e----ccccCCcccc
Q 006121 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-F----PLYLGASDRL 569 (660)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v-~----~~y~~~~~~~ 569 (660)
+++.++|.||+||++.+++..........+++|+|++|++++|+|+ +++++|.|+. |||+| + .||++
T Consensus 324 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~----- 396 (539)
T PRK06334 324 PHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGET--GLVLTRGTSLFSGYLG----- 396 (539)
T ss_pred CCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCce--EEEEEecCcccccccC-----
Confidence 7789999999999986554433333334568999999999999995 5889999996 99999 3 45554
Q ss_pred cCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCcee
Q 006121 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKC 639 (660)
Q Consensus 570 ~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~ 639 (660)
+++.+ .|.. .++.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.+
T Consensus 397 -~~~~~--~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~ 460 (539)
T PRK06334 397 -EDFGQ--GFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNA 460 (539)
T ss_pred -Ccccc--ccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCcc
Confidence 44432 2322 1255699999999999999999999999999999999999999999999999987
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=551.01 Aligned_cols=435 Identities=18% Similarity=0.155 Sum_probs=349.1
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++||++|+++.++ ++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 58 ~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 129 (549)
T PRK07788 58 AARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL 129 (549)
T ss_pred HHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 4589999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
++.++.+++.+++++++++++|+++.... .+..+....+....++...... .....+...++++......
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 199 (549)
T PRK07788 130 NTGFSGPQLAEVAAREGVKALVYDDEFTD------LLSALPPDLGRLRAWGGNPDDD--EPSGSTDETLDDLIAGSST-- 199 (549)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhHH------HHHhhccccccceEEEEecCcc--ccCCcCcccHHHHhcCCCC--
Confidence 99999999999999999999999875421 1111111112111111111000 0111234566766653322
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
...+..+++.++++|||||||+||||+++|+++.+.+.+....+++.++++++...|++|..++..++.++..|+
T Consensus 200 -----~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~ 274 (549)
T PRK07788 200 -----APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGS 274 (549)
T ss_pred -----CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCC
Confidence 111234578899999999999999999999999988887778888999999999999999999887888999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
++++.. .+++..+++.|+++++|++.++|++++.|++.... ...++++||.+++||+++++++.+++.+.++ ++++
T Consensus 275 ~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~ 352 (549)
T PRK07788 275 TVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLY 352 (549)
T ss_pred EEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhC-ccce
Confidence 999875 57899999999999999999999999999876543 4556889999999999999999999988775 6899
Q ss_pred ccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCccccccccc
Q 006121 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFR 580 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~ 580 (660)
|.||+||++..+...........+++|+|++|++++|+|++++++|.|++ |||+| ++.... +|++.+.. ..
T Consensus 353 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~---gY~~~~~~-~~-- 424 (549)
T PRK07788 353 NLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVV--GRIFVGNGFPFE---GYTDGRDK-QI-- 424 (549)
T ss_pred eccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCe--EEEEEeCCCccc---cccCCCcc-cc--
Confidence 99999999864433222223345789999999999999999999999996 99999 332222 12222211 11
Q ss_pred ccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 581 ~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
..+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+++|+.
T Consensus 425 ------~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv 497 (549)
T PRK07788 425 ------IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVV 497 (549)
T ss_pred ------cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEE
Confidence 123999999999999999999999999999999999999999999999999999988765544 456777764
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=559.75 Aligned_cols=447 Identities=16% Similarity=0.097 Sum_probs=343.3
Q ss_pred CCCCCCcEEEEEec-CCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++++|+++|+.+.. ..+..+.++.+||+||+++++++|++|++. +++||+|+|+++|+++|++++|||+++|++++|+
T Consensus 54 a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl 133 (651)
T PLN02736 54 VETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPL 133 (651)
T ss_pred HHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 47899999996421 111123456799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCC-----CCCCCCcchhhhhcc
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI-----PLREQDLSWKDFLSS 338 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~ 338 (660)
++.++.+++.+++++++++++|++.... +.+.......+....++......... .......+|++++..
T Consensus 134 ~~~~~~~~l~~il~~~~~~~l~~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (651)
T PLN02736 134 YDTLGPDAVKFIVNHAEVAAIFCVPQTL------NTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQ 207 (651)
T ss_pred ecCCCHHHHHHHHhccCCCEEEECHHHH------HHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHh
Confidence 9999999999999999999999986532 22222222222222222111110000 001123456666554
Q ss_pred CCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHh
Q 006121 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 418 (660)
... . ........++++|+|+|||||||.||||++||++++..+.+....+++.++|++++++|++|.++.+.++.+
T Consensus 208 ~~~--~--~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 283 (651)
T PLN02736 208 GRS--S--PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVM 283 (651)
T ss_pred ccc--C--CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 322 1 111223467999999999999999999999999999988888788889999999999999999999888899
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC-----------------------------CCC--
Q 006121 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----------------------------LEG-- 467 (660)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~-----------------------------~~~-- 467 (660)
|+.|+++++.+. ++..+++.|+++++|+++.+|++++.|.+... ...
T Consensus 284 l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (651)
T PLN02736 284 LHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPM 361 (651)
T ss_pred HHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCch
Confidence 999999999764 67889999999999999999999988764310 000
Q ss_pred ----------CCc-cCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceE
Q 006121 468 ----------LDW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL 536 (660)
Q Consensus 468 ----------~~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 536 (660)
..+ +++|.+++||+++++++.+++...++ ++++|.||+||+++..+.... .....+++|+|+||+++
T Consensus 362 ~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~pg~~v 439 (651)
T PLN02736 362 WDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEV 439 (651)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHhchheeccCC-CCCCCCccCCccCceEE
Confidence 001 48999999999999999998887664 789999999999865443322 23456789999999999
Q ss_pred EEEcC-CCCc---CCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEecc
Q 006121 537 VILDE-CGVP---YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 611 (660)
Q Consensus 537 ~vld~-~~~~---vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~ 611 (660)
+|+|. ++.. ..++. .|||+| +++.+.+ |+.+++.|++.|..+ +||+|||+|++|+||+|+|+||.
T Consensus 440 ~i~d~~~~~~~~~~~~~~--~GEl~vrgp~v~~G--Y~~~~~~t~~~~~~d------gw~~TGDlg~~d~dG~l~i~GR~ 509 (651)
T PLN02736 440 KLVDVPEMNYTSEDQPYP--RGEICVRGPIIFKG--YYKDEVQTREVIDED------GWLHTGDIGLWLPGGRLKIIDRK 509 (651)
T ss_pred EEEEccccCcccCCCCCC--CceEEecCCccccc--cccCHHHHHhhhccC------CCeeccceEEEcCCCcEEEEEec
Confidence 99983 3322 22233 399999 4433322 223778888888543 39999999999999999999999
Q ss_pred CCcccc-CceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 612 DDTMNL-GGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 612 dd~iki-~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
||+||+ +|++|+|.|||++|.+||.|++|+|+. +..+..++||+.
T Consensus 510 kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g--~~~~~~~~A~vv 555 (651)
T PLN02736 510 KNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG--DSLNSSLVAVVV 555 (651)
T ss_pred hhheEcCCCcEechHHHHHHHhcCCCeeEEEEEe--cCCCceeEEEEE
Confidence 999997 699999999999999999999999886 333567777753
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=541.95 Aligned_cols=454 Identities=21% Similarity=0.266 Sum_probs=368.7
Q ss_pred CcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCH
Q 006121 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (660)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (660)
.|+.+...|....++++++ +...|+++|+.+.+. ...+++||+||.++++++|++|.+. +++||+|+|+++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~----~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~ 109 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHA-DGGRKDKVALRYLDA----SRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIP 109 (570)
T ss_pred ccCCCCceeHHHHHHHHhh-ccCCCCceEEEEECC----CCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 5888888888888887654 135799999998653 1234899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCC
Q 006121 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG 322 (660)
Q Consensus 245 ~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 322 (660)
++++++|||+++|++++|+++.++++++.+++++++++++++++........ ...+. ..+++.....
T Consensus 110 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 178 (570)
T PRK04319 110 ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--------DDLPSLKHVLLVGEDVE--- 178 (570)
T ss_pred HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--------hcCCCceEEEEECCCcC---
Confidence 9999999999999999999999999999999999999999998764321110 01111 2222221110
Q ss_pred CCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEE
Q 006121 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (660)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~ 402 (660)
...+..++.+++..... ........+++++||+|||||||.||||+++|+++++.+......++++++|++++
T Consensus 179 --~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~ 251 (570)
T PRK04319 179 --EGPGTLDFNALMEQASD-----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWC 251 (570)
T ss_pred --CCcCccCHHHHHhhcCC-----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEe
Confidence 11233456665543222 11223346789999999999999999999999999888877777788999999999
Q ss_pred ecCccccchh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEee
Q 006121 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAST 479 (660)
Q Consensus 403 ~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~g 479 (660)
..++.|..+. +.++.+++.|+++++.+..+++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|
T Consensus 252 ~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 331 (570)
T PRK04319 252 TADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSV 331 (570)
T ss_pred cCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEc
Confidence 9999998876 6789999999999998777889999999999999999999999999987542 234568899999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~ 559 (660)
|+++++++.+++++.++ .++++.||+||++..++.........++++|+|++|++++|+|++++++|.|+. |||++.
T Consensus 332 G~~l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~--Gel~i~ 408 (570)
T PRK04319 332 GEPLNPEVVRWGMKVFG-LPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRM--GNLAIK 408 (570)
T ss_pred ccCCCHHHHHHHHHHhC-CCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCc--eEEEEc
Confidence 99999999998887764 789999999999865443333233456789999999999999999999999996 999993
Q ss_pred ---c----cccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhc
Q 006121 560 ---P----LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSS 632 (660)
Q Consensus 560 ---~----~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~ 632 (660)
+ ||++ +++.|+++|. + | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|.
T Consensus 409 ~~~~~~~~GY~~------~~~~~~~~~~-~----g--w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~ 475 (570)
T PRK04319 409 KGWPSMMRGIWN------NPEKYESYFA-G----D--WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM 475 (570)
T ss_pred CCCChHHhHhcC------CHHHhhhhhc-C----C--ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHh
Confidence 2 4554 6667777775 1 2 9999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEEeecC-cceeeeecc
Q 006121 633 PRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 633 ~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
+||+|++++|+...+.. +..+++|+.
T Consensus 476 ~~~~V~~~~v~g~~~~~~g~~~~a~v~ 502 (570)
T PRK04319 476 EHPAVAEAGVIGKPDPVRGEIIKAFVA 502 (570)
T ss_pred hCCCeeecceecccCcCCceEEEEEEE
Confidence 99999999888766543 455666653
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=555.93 Aligned_cols=447 Identities=18% Similarity=0.144 Sum_probs=333.7
Q ss_pred cCCCCCCcEEEEEecC-CCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
.++++|+++|+.+... ....+.++.+||+||.++++++|++|.+. +++||+|+|+++|+++|++++|||+++|+++||
T Consensus 52 ~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vp 131 (660)
T PLN02861 52 AVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVP 131 (660)
T ss_pred HHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEE
Confidence 3478999999976310 01123456899999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC---CcEEEEcCCCCCCC---CCCCCCCcchhhhh
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVG---IPLREQDLSWKDFL 336 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~~~~~~~~~~~~ 336 (660)
|+|.++.+++.+++++++++++|+++... +.+.......+ ..++.+........ ........+|+++.
T Consensus 132 l~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (660)
T PLN02861 132 LYDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFS 205 (660)
T ss_pred ecCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHH
Confidence 99999999999999999999999976421 11111111111 12222221100000 00001124566655
Q ss_pred ccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC-----CCCCCEEEEecCccccch
Q 006121 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-----LKVGDVYCWPTNLGWVMG 411 (660)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 411 (660)
..... ........++|+|+|+|||||||.||||+++|++++..+......++ +.++|++++++|++|.++
T Consensus 206 ~~~~~-----~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 280 (660)
T PLN02861 206 LMGSL-----DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYD 280 (660)
T ss_pred HhCcc-----cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHH
Confidence 43221 01122346799999999999999999999999999887765544443 468899999999999988
Q ss_pred hhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcC----------------------------
Q 006121 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN---------------------------- 463 (660)
Q Consensus 412 ~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~---------------------------- 463 (660)
....+.+++.|+++++.+ .++..+++.|+++++|+++++|+++..|.+..
T Consensus 281 ~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~ 358 (660)
T PLN02861 281 QVIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358 (660)
T ss_pred HHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhc
Confidence 755566899999999874 47789999999999999999999999886410
Q ss_pred ---------CCCCC-------Cc-cCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccc
Q 006121 464 ---------CLEGL-------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 526 (660)
Q Consensus 464 ---------~~~~~-------~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 526 (660)
..... .+ +++|.+++||+++++++.+ +...++...++|+||+||+++.++..........++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gs 437 (660)
T PLN02861 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGT 437 (660)
T ss_pred CCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCC
Confidence 00000 01 4799999999999998754 555555457999999999976443322222234679
Q ss_pred cCcCCCCceEEEEc--CCC-CcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecC
Q 006121 527 FSTATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602 (660)
Q Consensus 527 iG~p~~~~~~~vld--~~~-~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~d 602 (660)
+|+|+++++++|+| ++| ..++.+.. |||+| +++.+.+ |+.+++.|++.|. + | ||+|||+|++|+|
T Consensus 438 vG~p~p~~ev~i~d~~~~g~~~~~~~~~--GEi~vrGp~v~~G--Y~~~pe~T~~~f~-d----G--w~~TGDlg~~d~d 506 (660)
T PLN02861 438 VGVPMTTIEARLESVPEMGYDALSDVPR--GEICLRGNTLFSG--YHKRQDLTEEVLI-D----G--WFHTGDIGEWQPN 506 (660)
T ss_pred ccCccCceEEEEEEccccCcccCCCCCc--eeEEEcCCccccc--ccCCHHHHHhhhh-c----c--CcccCceEEECCC
Confidence 99999999999998 444 34455554 99999 4433221 2227888998884 2 3 9999999999999
Q ss_pred ceEEEEeccCCcccc-CceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 603 GYIIVQGRADDTMNL-GGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 603 G~l~~~GR~dd~iki-~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
|+|+|+||+||+||+ +|++|+|.|||++|.+||.|++|+|+... .+..++|++.
T Consensus 507 G~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~--~~~~~~A~vv 561 (660)
T PLN02861 507 GAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS--FESFLVAVVV 561 (660)
T ss_pred CcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC--CcceeEEEEE
Confidence 999999999999996 79999999999999999999999887643 3456777763
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=545.59 Aligned_cols=455 Identities=19% Similarity=0.155 Sum_probs=351.2
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++..........+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++| +++||+
T Consensus 35 a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~ 113 (632)
T PRK07529 35 AARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPIN 113 (632)
T ss_pred HHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCC
Confidence 47899999999853321223345999999999999999999999 9999999999999999999999999999 569999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc--EEEEcCCCCCCCC-C---------CCCCCcch
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGI-P---------LREQDLSW 332 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~---------~~~~~~~~ 332 (660)
|.++++++.+++++++++++|++..+.. ....+.........+.. ++.+......... . ...+...|
T Consensus 114 ~~~~~~~i~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (632)
T PRK07529 114 PLLEPEQIAELLRAAGAKVLVTLGPFPG-TDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDF 192 (632)
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeCCCCC-chHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCH
Confidence 9999999999999999999999875321 01111111122222222 2222211100000 0 11223455
Q ss_pred hhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh
Q 006121 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (660)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 412 (660)
.+.+..... ..........++++|+++|||||||.||||+++|+++++........+++++++++++..|++|..+.
T Consensus 193 ~~~~~~~~~---~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 269 (632)
T PRK07529 193 DAELARQPG---DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNAL 269 (632)
T ss_pred HHHHhcCCC---ccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHH
Confidence 555443322 11111223467999999999999999999999999998887777777888999999999999998877
Q ss_pred -hHHHHhhhcCcEEEEecCC-C-C---hhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChh
Q 006121 413 -VILFSSFLNGATLALYQGS-P-L---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (660)
Q Consensus 413 -~~~~~~l~~G~~lv~~~~~-~-~---~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~ 486 (660)
..++.+|..|+++++.+.. . + ...++++|+++++|++.++|+++..|++... ...++++||.+++||++++++
T Consensus 270 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~gg~~l~~~ 348 (632)
T PRK07529 270 LVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALCGAAPLPVE 348 (632)
T ss_pred HHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEEcCCCCCHH
Confidence 4688999999999998632 1 2 3578899999999999999999999987643 234689999999999999999
Q ss_pred hHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEE--cCCC---CcCCCCCCceeEEEE-ec
Q 006121 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECG---VPYPDDQPCVGEVGL-FP 560 (660)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vl--d~~~---~~vp~G~~giGel~v-~~ 560 (660)
+.+++++.+ +++++|.||+||++..+...........+++|+|+++++++|+ |++| +++|.|+. |||+| ++
T Consensus 349 l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~--Gel~v~gp 425 (632)
T PRK07529 349 VFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEV--GVLCIAGP 425 (632)
T ss_pred HHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCc--eEEEEECC
Confidence 999998876 5899999999999875544333333466899999999998884 7777 89999996 99999 44
Q ss_pred cccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceee
Q 006121 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCL 640 (660)
Q Consensus 561 ~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a 640 (660)
+.+.+ |++++.+...|. +.+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+|
T Consensus 426 ~v~~G---Y~~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a 496 (632)
T PRK07529 426 NVFSG---YLEAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALA 496 (632)
T ss_pred Ccccc---ccCCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEE
Confidence 44332 345555555554 245999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecC-cceeeeecc
Q 006121 641 HIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 641 ~vv~~~~~~-~~~l~a~~~ 658 (660)
+|+...+.. +..+++|++
T Consensus 497 ~vvg~~d~~~ge~~~a~v~ 515 (632)
T PRK07529 497 AAVGRPDAHAGELPVAYVQ 515 (632)
T ss_pred EEEeccCCCCCceeEEEEE
Confidence 998876554 455677764
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=540.44 Aligned_cols=436 Identities=16% Similarity=0.093 Sum_probs=341.0
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.++ ++||+||.++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++||
T Consensus 16 ~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl 87 (563)
T PLN02860 16 LATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPL 87 (563)
T ss_pred HHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeC
Confidence 3578999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHh-ccCCCcE-EEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAPLKA-IVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+|.++.+++.+++++++++++++++.... ....+. ...+... .++.................++++......
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (563)
T PLN02860 88 NYRWSFEEAKSAMLLVRPVMLVTDETCSS------WYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG 161 (563)
T ss_pred CcccCHHHHHHHHHhcCceEEEEecccch------HHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc
Confidence 99999999999999999999999875311 111111 1111111 111111000000000001111111111000
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
.........++++++++|||||||+||||+++|++++.........++++++|+++..+|++|+.++..++.+++.
T Consensus 162 ----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~ 237 (563)
T PLN02860 162 ----TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMV 237 (563)
T ss_pred ----cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHc
Confidence 0001123457899999999999999999999999998777666667889999999999999999999888999999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
|+++++.+ .+++..+++.|+++++|++.++|+++..|++.... ....+++||.+++||+++++++.+++.+.+++++
T Consensus 238 G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 316 (563)
T PLN02860 238 GACHVLLP-KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316 (563)
T ss_pred CceEEecC-CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence 99999986 57889999999999999999999999999865322 2245789999999999999999999998887789
Q ss_pred eeccccccccccccccCCcCC----------------------CCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEE
Q 006121 500 IIESCGGTELSSAYIQGSLLQ----------------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------------------~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~ 557 (660)
++|.||+||+++.++...... .....++|+|+++++++|+|++ +|+. |||+
T Consensus 317 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~~--Gel~ 389 (563)
T PLN02860 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSRV--GRIL 389 (563)
T ss_pred eecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCce--eEEE
Confidence 999999999975433221111 0112378999999999999976 5664 9999
Q ss_pred E-e----ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhc
Q 006121 558 L-F----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSS 632 (660)
Q Consensus 558 v-~----~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~ 632 (660)
| + .||++ +++.|++.|..+ +||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.
T Consensus 390 v~g~~~~~GY~~------~~~~t~~~~~~~------g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 457 (563)
T PLN02860 390 TRGPHVMLGYWG------QNSETASVLSND------GWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLS 457 (563)
T ss_pred EecCcccccccC------CccccchhccCC------CeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHH
Confidence 9 3 35554 667777776533 39999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEEeecC-cceeeeecc
Q 006121 633 PRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 633 ~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
+||+|++++|+...+.. +..+++|+.
T Consensus 458 ~~p~V~~~~v~~~~~~~~~~~~~a~v~ 484 (563)
T PLN02860 458 QHPGVASVVVVGVPDSRLTEMVVACVR 484 (563)
T ss_pred hCCCcceeEEEEEecCcCCceEEEEEE
Confidence 99999999998876544 456777653
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=553.48 Aligned_cols=409 Identities=15% Similarity=0.135 Sum_probs=335.0
Q ss_pred CCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCC
Q 006121 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (660)
Q Consensus 188 ~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~ 266 (660)
.+||++|+++ +. .+||+||+++++++|++|.+. +++|++|+|+++|++++++++|||+++|++++|++|.
T Consensus 18 ~~pd~~a~~~-~~--------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~ 88 (705)
T PRK06060 18 GWYDRPAFYA-AD--------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE 88 (705)
T ss_pred cCCCceEEEe-cC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCC
Confidence 3799999986 34 799999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCC
Q 006121 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (660)
Q Consensus 267 ~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (660)
++.+++.+++++++++++|+++....... . .. + ....++...... . .
T Consensus 89 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~----~~-~----------------~~~~~~~~~~~~--~-~ 135 (705)
T PRK06060 89 LHRDDHALAARNTEPALVVTSDALRDRFQ---------P----SR-V----------------AEAAELMSEAAR--V-A 135 (705)
T ss_pred CCHHHHHHHHhcCCCcEEEEchHHhhhhc---------c----cc-c----------------chhhhhhhhccc--c-C
Confidence 99999999999999999999864321100 0 00 0 001111111000 0 0
Q ss_pred CCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh-HhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcE
Q 006121 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (660)
Q Consensus 347 ~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (660)
........++++|||+|||||||+||||+++|+++.+++.+.. ..+++++++++++..++.|+.++ ..++.+|..|++
T Consensus 136 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~ 215 (705)
T PRK06060 136 PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGS 215 (705)
T ss_pred CCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence 0011234568999999999999999999999999988776553 45788899999999999999887 568899999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+++.+...++..+..+++++++|+++++|+++..|++... ..++++||.+++|||++++++.+++.+.+++++++|.|
T Consensus 216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y 293 (705)
T PRK06060 216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293 (705)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence 9998766678888999999999999999999999987542 33578999999999999999999999888778999999
Q ss_pred cccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccccccc
Q 006121 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYF 579 (660)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f 579 (660)
|+||++..+... .......+++|+|+++++++|+|++++++|.|+. |||+| + .||++ +++.+ +
T Consensus 294 G~tE~~~~~~~~-~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~--GEl~i~g~~v~~GY~~------~~~~~---~ 361 (705)
T PRK06060 294 GSTEVGQTFVSN-RVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE--GDLWVRGPAIAKGYWN------RPDSP---V 361 (705)
T ss_pred eccccCceEEec-cCCCCCcCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEccchhhhhhhC------CCccc---c
Confidence 999998644322 2223345789999999999999999999999996 99999 3 46665 34332 1
Q ss_pred cccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 580 ~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.+.+||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+++|+.
T Consensus 362 ------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv 435 (705)
T PRK06060 362 ------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLV 435 (705)
T ss_pred ------cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEE
Confidence 1345999999999999999999999999999999999999999999999999999988766543 346777754
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=527.94 Aligned_cols=418 Identities=67% Similarity=1.099 Sum_probs=316.0
Q ss_pred cCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCC
Q 006121 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (660)
Q Consensus 240 ~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 319 (660)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+..+.+..+........+++...+.
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 68999999999999999999999999999999999999999999999875432222223333332222222333321111
Q ss_pred CCCCCCCCCCcchhhhhccCCCCC--CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCC
Q 006121 320 DVGIPLREQDLSWKDFLSSVDYHP--RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (660)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (660)
........+..+|+++........ ...........++++++|+|||||||+||||+++|++++.........++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 000000112345666553211100 000111122356899999999999999999999999987766555566788999
Q ss_pred CEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccE
Q 006121 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475 (660)
Q Consensus 398 ~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~ 475 (660)
|++++.+|++|+.+++.++.+|+.|+++++.+..+++..+++.|+++++|++.++|+++..|++... ....++++||.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~ 240 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence 9999999999999988888999999999998765678899999999999999999999999987542 33457889999
Q ss_pred EEeecCCCChhhHHHHHhhCC-CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCcee
Q 006121 476 FASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (660)
Q Consensus 476 v~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giG 554 (660)
+++||++++++..+++++..+ +++++|.||+||++..++..........+++|+|+++++++|+|++|+++|.|+..+|
T Consensus 241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G 320 (499)
T PLN03051 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG 320 (499)
T ss_pred EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence 999999999998887766332 3679999999998754333222233456789999999999999999999999841149
Q ss_pred EEEEeccccCCcccccCcccccccccccccC--CCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhc
Q 006121 555 EVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSS 632 (660)
Q Consensus 555 el~v~~~y~~~~~~~~~~~~t~~~f~~~p~~--~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~ 632 (660)
||+|...+++...+|++++.++.+|..+|+. ++.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 321 el~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~ 400 (499)
T PLN03051 321 EVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACD 400 (499)
T ss_pred EEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence 9999544444334556666555555445543 57789999999999999999999999999999999999999999999
Q ss_pred C-CCCceeeEEEEEeecCc--ceeeeec
Q 006121 633 P-RSSFKCLHIYAWLYFHK--LELIFYF 657 (660)
Q Consensus 633 ~-~~~V~~a~vv~~~~~~~--~~l~a~~ 657 (660)
+ ||+|.+|+||...+... ..+++|+
T Consensus 401 ~~~p~V~~aavvg~~d~~~g~~~~~a~v 428 (499)
T PLN03051 401 RAVAGIAETAAVGVAPPDGGPELLVIFL 428 (499)
T ss_pred hcCCCcceEEEEEecCCCCCceEEEEEE
Confidence 6 99999999998766554 3577776
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-61 Score=542.95 Aligned_cols=433 Identities=16% Similarity=0.138 Sum_probs=328.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh---c-cCCC-----------CEEEEEcCCCHHHHHH
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT---M-FSKG-----------DAIAIDMPMTVRAVII 249 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~---~-v~~g-----------d~V~i~~~~s~~~vva 249 (660)
+++++|+++|+.+... +..++.+||+||.++++++|++|.+ . +++| |+|+|+++|+++|+++
T Consensus 70 ~~~~~p~~~Al~~~~~---g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~ 146 (746)
T PTZ00342 70 KYKLNNNKIAIVEHSC---GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVA 146 (746)
T ss_pred HHhhcCCceeEeccCC---CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHH
Confidence 3478999999986421 1235689999999999999999996 6 9998 9999999999999999
Q ss_pred HHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCC------
Q 006121 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDV------ 321 (660)
Q Consensus 250 ~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~------ 321 (660)
.+||+++|++.||+++.++++++.++|+++++++|+++.... +.+.......+. .++++.......
T Consensus 147 ~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 220 (746)
T PTZ00342 147 DLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIKSKEININK 220 (746)
T ss_pred HHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCccccccccc
Confidence 999999999999999999999999999999999999976432 222222223332 233332211000
Q ss_pred -----------CCCC-------------------------------------------CCCCcchhhhhccCCCCCCCCC
Q 006121 322 -----------GIPL-------------------------------------------REQDLSWKDFLSSVDYHPRPNY 347 (660)
Q Consensus 322 -----------~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 347 (660)
.... ......|+++..... ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 295 (746)
T PTZ00342 221 EEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-----TN 295 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-----cC
Confidence 0000 000011122211100 01
Q ss_pred CCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhc--CCCCCCEEEEecCccccchhhHHHHhhhcCcEE
Q 006121 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (660)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~l 425 (660)
.......|+++|+|+|||||||.||||++||+|+++.+....... ...+.+++++++|++|.++....+.+++.|+++
T Consensus 296 ~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i 375 (746)
T PTZ00342 296 YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTI 375 (746)
T ss_pred CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEE
Confidence 112334689999999999999999999999999988776543321 223568999999999999987777889999999
Q ss_pred EEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhc--------CCCCC------------------------------
Q 006121 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NCLEG------------------------------ 467 (660)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--------~~~~~------------------------------ 467 (660)
++.+. ++..+++.|+++++|++.++|.++..|.+. +....
T Consensus 376 ~~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~ 453 (746)
T PTZ00342 376 NIWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISS 453 (746)
T ss_pred EEeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 99863 678999999999999999999999988652 10000
Q ss_pred ----CCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCC-CCceEEEEc-C
Q 006121 468 ----LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILD-E 541 (660)
Q Consensus 468 ----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld-~ 541 (660)
.-.++||.+++||+++++++.+++...+ +++++++||+||+++..+.... .....+++|+|+ |+++++|+| +
T Consensus 454 kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~d~~ 531 (746)
T PTZ00342 454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVRTWE 531 (746)
T ss_pred HHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEeccc
Confidence 0025899999999999999999998766 4889999999999865443322 334568999998 999999998 4
Q ss_pred CCCcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCcccc-Cc
Q 006121 542 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GG 619 (660)
Q Consensus 542 ~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki-~G 619 (660)
++...+.+.. |||+| ++..+.+ |+.+++.|++.|..++ ||+|||+|++|+||+|+|+||+||+||+ +|
T Consensus 532 ~~~~~~~~~~--GEl~vrGp~v~~G--Y~~~pe~T~~~f~~dG------W~~TGDig~~d~dG~l~i~gR~kdlIkls~G 601 (746)
T PTZ00342 532 TYKATDTLPK--GELLIKSDSIFSG--YFLEKEQTKNAFTEDG------YFKTGDIVQINKNGSLTFLDRSKGLVKLSQG 601 (746)
T ss_pred ccccCCCCCc--eEEEEecCccccc--ccCChhhhhhhcCcCC------cccCCcEEEECCCCeEEEEccCCCeEEeCCC
Confidence 4444444444 99999 4433322 2237889999997543 9999999999999999999999999995 79
Q ss_pred eeecchHHHHhhcCCCCceeeEEEEE
Q 006121 620 IKALLLPLTFLSSPRSSFKCLHIYAW 645 (660)
Q Consensus 620 ~rv~~~eIE~~L~~~~~V~~a~vv~~ 645 (660)
++|+|.|||++|.+||.|.+|+|+..
T Consensus 602 e~I~p~eIE~~l~~~p~V~~~~VvG~ 627 (746)
T PTZ00342 602 EYIETDMLNNLYSQISFINFCVVYGD 627 (746)
T ss_pred EEEchHHHHHHHhcCCCccEEEEEcc
Confidence 99999999999999999999988864
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=530.66 Aligned_cols=430 Identities=14% Similarity=0.092 Sum_probs=345.1
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.++ ++||+||+++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 52 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 123 (537)
T PRK13382 52 AAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLL 123 (537)
T ss_pred HHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEec
Confidence 4589999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|++.... +.........+....++..... .....++++......
T Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-- 188 (537)
T PRK13382 124 NTSFAGPALAEVVTREGVDTVIYDEEFS------ATVDRALADCPQATRIVAWTDE-------DHDLTVEVLIAAHAG-- 188 (537)
T ss_pred CcccCHHHHHHHHHhcCCCEEEEchhhH------HHHHHHHhhccccceEEEecCC-------cccccHHHHhhccCc--
Confidence 9999999999999999999999987532 1111111111111111111000 012234444332211
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
......+++.++++|||||||+||||+++|+++.....+....+.+..+++++...|++|..++..++.++..|+
T Consensus 189 -----~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~ 263 (537)
T PRK13382 189 -----QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLAC 263 (537)
T ss_pred -----CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCc
Confidence 011234688999999999999999999999998887777777788889999999999999999888899999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
++++.+ .+++..+++.|+++++|++..+|++++.|++.... ...+++++|.+++|||++++++.+.+.+.++ .+++
T Consensus 264 ~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~ 341 (537)
T PRK13382 264 TIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIY 341 (537)
T ss_pred EEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcEE
Confidence 998865 57899999999999999999999999999875421 2345678999999999999999999988875 6799
Q ss_pred ccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCccccccccc
Q 006121 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFR 580 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~ 580 (660)
|.||+||++..++..........+++|+|++|++++|+|++++++|.|+. |||++ +++...+ |+ ++.+.. |.
T Consensus 342 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g---Y~-~~~~~~-~~ 414 (537)
T PRK13382 342 NNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEV--GTIFVRNDTQFDG---YT-SGSTKD-FH 414 (537)
T ss_pred ecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCe--eEEEEEcCCcccC---cc-ccchhh-cc
Confidence 99999999865443222223456789999999999999999999999996 99999 5544432 22 333332 21
Q ss_pred ccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 581 ~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
+.||+|||++++++||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+++|+.
T Consensus 415 -------~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv 486 (537)
T PRK13382 415 -------DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVV 486 (537)
T ss_pred -------CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEE
Confidence 23999999999999999999999999999999999999999999999999999988766543 455777654
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-61 Score=548.59 Aligned_cols=444 Identities=16% Similarity=0.144 Sum_probs=330.8
Q ss_pred cCCCCCCcEEEEEecC-----------CCC--------CCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCH
Q 006121 185 HRRKEDNTVAIVWRED-----------RCD--------ESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~-----------~~~--------~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (660)
+++++||++|+.+... .+. .++.+.+||+||+++++++|++|++. +++||+|+|+++|++
T Consensus 78 ~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 157 (700)
T PTZ00216 78 ICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRW 157 (700)
T ss_pred HHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH
Confidence 4589999999998521 000 12467999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc--CCC-cEEEEcCCCCCC
Q 006121 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--APL-KAIVLPAIGNDV 321 (660)
Q Consensus 245 ~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~ 321 (660)
+|++++|||+++|++++|+++.++++++.++++++++++++++.... +.+...... .+. .++++.......
T Consensus 158 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~~~~~ii~~~~~~~~~ 231 (700)
T PTZ00216 158 EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------PNLLRLMKSGGMPNTTIIYLDSLPASV 231 (700)
T ss_pred HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------HHHHHhhhhccCCceEEEEECCCcccc
Confidence 99999999999999999999999999999999999999999986421 111111111 111 223332111100
Q ss_pred CCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhc-----CCCC
Q 006121 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKV 396 (660)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~ 396 (660)
........+|++++...... ...........++++|||+|||||||.||||+++|+|+++.+.+....+ .+++
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~ 309 (700)
T PTZ00216 232 -DTEGCRLVAWTDVVAKGHSA-GSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEE 309 (700)
T ss_pred -ccCCceEEEHHHHHHhCCcc-ccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCC
Confidence 00112345677776544210 0111112334689999999999999999999999999998877655433 2468
Q ss_pred CCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHH-------HHHHcCCeEEeecHHHHHHHHhcCCC----
Q 006121 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK-------FVQDAGVTVLGTVPSLVKAWRNTNCL---- 465 (660)
Q Consensus 397 ~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~-------~i~~~~vt~l~~~P~~l~~l~~~~~~---- 465 (660)
++++++++|++|.++.......++.|+++++. ++..+.+ .|+++++|++.++|++++.|.+....
T Consensus 310 ~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~ 385 (700)
T PTZ00216 310 DETYCSYLPLAHIMEFGVTNIFLARGALIGFG----SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPP 385 (700)
T ss_pred CCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC----CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhc
Confidence 89999999999988765455567788877663 2334443 68899999999999999887642100
Q ss_pred ---------------------CCCC----------------ccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccc
Q 006121 466 ---------------------EGLD----------------WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (660)
Q Consensus 466 ---------------------~~~~----------------l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (660)
.... .+++|.+++||+++++++.++++..+ + +++|+||+||
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TE 463 (700)
T PTZ00216 386 VGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTE 463 (700)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCccc
Confidence 0000 15799999999999999988776654 3 8999999999
Q ss_pred cccccccCCcCCCCcccccCcCCCCceEEEEcCCC--CcCCCCCCceeEEEE-e----ccccCCcccccCcccccccccc
Q 006121 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG--VPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYFRG 581 (660)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~--~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f~~ 581 (660)
+++..+... ......+++|+|++|++++|+|+++ ...+++.. |||+| + .||++ +++.|++.|..
T Consensus 464 t~~~~~~~~-~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~--GEL~vrG~~v~~GY~~------~pe~T~~~f~~ 534 (700)
T PTZ00216 464 TVCCGGIQR-TGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR--GEILLRGPFLFKGYYK------QEELTREVLDE 534 (700)
T ss_pred ccccccccC-CCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCC--ceEEEcCCcccchhcC------ChhHhhhhccc
Confidence 986544332 2234567999999999999999764 23455554 99999 4 45554 88899999975
Q ss_pred cccCCCceeEeeCceEEEecCceEEEEeccCCccc-cCceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeec
Q 006121 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYF 657 (660)
Q Consensus 582 ~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~ik-i~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~ 657 (660)
++ ||+|||+|++|+||+|+|+||+||+|| ++|+||+|+|||++|.+||.|+++.+++....+...+++++
T Consensus 535 dG------w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~v 605 (700)
T PTZ00216 535 DG------WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALV 605 (700)
T ss_pred cC------CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEE
Confidence 53 999999999999999999999999999 89999999999999999999997533333345566777775
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-60 Score=530.40 Aligned_cols=438 Identities=15% Similarity=0.114 Sum_probs=340.6
Q ss_pred CCCCCCcEEEEEecCCC--CCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 186 RRKEDNTVAIVWREDRC--DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~--~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
++++|+++|+++.+... ....++++||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|
T Consensus 16 a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 16 AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVL 95 (552)
T ss_pred HHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEE
Confidence 46889999999865410 011234799999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccC-C--CcEEEEcCCCCCCCCCCCCCCcchhhhhccC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (660)
++|.++.+++.+++++++++++|+++.. .....+.... . ...+.+.. . .......++++....
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~i~~~~--~-----~~~~~~~~~~~~~~~ 161 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIPKA-------HLARRLFGWGKPSVRRLVTVGG--R-----LLWGGTTLATLLRDG 161 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEeccHH-------HHHHHHhccCccchhheecccc--c-----cccCCccHHHhcccC
Confidence 9999999999999999999999987521 0001111000 0 01111110 0 001122344443221
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhh
Q 006121 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 419 (660)
.. .........+++++||+|||||||.||||+++|+++.+.+.+....+++.++++.++..|+.|. ..+
T Consensus 162 ~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~-------~~~ 230 (552)
T PRK09274 162 AA----APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFAL-------FGP 230 (552)
T ss_pred cc----ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHh-------hhh
Confidence 11 1112233467899999999999999999999999999988888888899999999988877543 234
Q ss_pred hcCcEEEEecC------CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHh
Q 006121 420 LNGATLALYQG------SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (660)
Q Consensus 420 ~~G~~lv~~~~------~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~ 493 (660)
..|+++++.+. ..++..+++.|+++++|+++++|++++.|.+.......++++||.+++||+++++++.+++.+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~ 310 (552)
T PRK09274 231 ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRA 310 (552)
T ss_pred hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHH
Confidence 57888888642 347889999999999999999999999998865545567899999999999999999999998
Q ss_pred hCC-CCceeccccccccccccccCCcC---------CCCcccccCcCCCCceEEEEcC---------CCCcCCCCCCcee
Q 006121 494 KAW-YNAIIESCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILDE---------CGVPYPDDQPCVG 554 (660)
Q Consensus 494 ~~~-~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~~~vld~---------~~~~vp~G~~giG 554 (660)
.++ +++++|.||+||++.+++..... ......++|+|+++++++|+|+ +++++|.|+. |
T Consensus 311 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~--G 388 (552)
T PRK09274 311 MLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI--G 388 (552)
T ss_pred HcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCe--e
Confidence 886 47899999999998644332211 1112247999999999999994 5678999996 9
Q ss_pred EEEE-----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHH
Q 006121 555 EVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTF 629 (660)
Q Consensus 555 el~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~ 629 (660)
||+| ..||++ +++.|...|..++. |.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||+
T Consensus 389 el~v~g~~~~~GY~~------~~~~t~~~~~~~~~--g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~ 460 (552)
T PRK09274 389 EIVVAGPMVTRSYYN------RPEATRLAKIPDGQ--GDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCER 460 (552)
T ss_pred EEEEecCcccccccC------ChHHhhhhhcccCC--CCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHH
Confidence 9999 345555 67777777654432 3369999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 630 LSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 630 ~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
+|.+||+|++++|+...+..+..++++++
T Consensus 461 ~l~~~p~V~~~~v~~~~~~~~~~~~~~v~ 489 (552)
T PRK09274 461 IFNTHPGVKRSALVGVGVPGAQRPVLCVE 489 (552)
T ss_pred HHHhCcccceeEEEEeCCCCCceEEEEEE
Confidence 99999999999999876655555666654
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-59 Score=521.24 Aligned_cols=441 Identities=19% Similarity=0.197 Sum_probs=348.9
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
+.+|+++|+++.+. ..+.++.+||+||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++|
T Consensus 35 ~~~p~~~A~~~~~~--~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~ 112 (547)
T PRK13295 35 ASCPDKTAVTAVRL--GTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMP 112 (547)
T ss_pred HHCCCceEEEecCC--CccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEecccc
Confidence 67899999998652 112345999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC-
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH- 342 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (660)
.++.+++.+++++++++++++++.+.. .+.......+....+. .++.+... +..++.++.......
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 181 (547)
T PRK13295 113 IFRERELSFMLKHAESKVLVVPKTFRG-FDHAAMARRLRPELPALRHVVVVGGD----------GADSFEALLITPAWEQ 181 (547)
T ss_pred ccCHHHHHHHHHhcCceEEEEeccccC-cchHHHHHHHhhhCCCcceEEEecCC----------CccCHHHHhhCCcccc
Confidence 999999999999999999999875421 0111111122222222 12222111 112333333211100
Q ss_pred --CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhh
Q 006121 343 --PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (660)
Q Consensus 343 --~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l 419 (660)
..+.........++++|+++|||||||.||||+++|+++...+......+++++++++++.+|++|..++ +.++.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l 261 (547)
T PRK13295 182 EPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPV 261 (547)
T ss_pred ccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHH
Confidence 0001111223467899999999999999999999999999888887788889999999999999998876 6688999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
..|+++++.+ ..++..+++.|+++++|++.++|+++..|.........++++||.+++||+++++++.+++++.+ +++
T Consensus 262 ~~G~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~ 339 (547)
T PRK13295 262 MLGATAVLQD-IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GAK 339 (547)
T ss_pred HcCCeEEeCC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CCC
Confidence 9999999976 56889999999999999999999999999876555556788999999999999999999988877 589
Q ss_pred eeccccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcc
Q 006121 500 IIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNAD 573 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~ 573 (660)
++|.||+||++...+..... ......++|+|+++++++|+|++++++|.|+. |||+| + .||++ +++
T Consensus 340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~ 411 (547)
T PRK13295 340 IVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI--GRLQVRGCSNFGGYLK------RPQ 411 (547)
T ss_pred eEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC--CeEEEEcCcccccccC------Ccc
Confidence 99999999998643332211 12234688999999999999999999999997 99999 3 34444 566
Q ss_pred cccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cce
Q 006121 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLE 652 (660)
Q Consensus 574 ~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~ 652 (660)
.|+..+ +| ||+|||+|++++||+++|.||.||+||++|+||+|.|||++|.++++|.+++|+...+.. +..
T Consensus 412 ~t~~~~------~g--~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~ 483 (547)
T PRK13295 412 LNGTDA------DG--WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGER 483 (547)
T ss_pred ccccCC------CC--CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcE
Confidence 665431 23 999999999999999999999999999999999999999999999999999998876543 345
Q ss_pred eeeecc
Q 006121 653 LIFYFS 658 (660)
Q Consensus 653 l~a~~~ 658 (660)
+++++.
T Consensus 484 ~~~~v~ 489 (547)
T PRK13295 484 ACAFVV 489 (547)
T ss_pred EEEEEE
Confidence 666653
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=523.87 Aligned_cols=434 Identities=17% Similarity=0.148 Sum_probs=342.8
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+.+|+++|+++.... .++||+||+++++++|++|++ . +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 50 ~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 123 (560)
T PLN02574 50 HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMN 123 (560)
T ss_pred cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcC
Confidence 468999999975431 279999999999999999999 8 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.++.+++.++++++++++++++.... ..+.. ....++.+..... .. ........|.++......
T Consensus 124 p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--- 188 (560)
T PLN02574 124 PSSSLGEIKKRVVDCSVGLAFTSPENV---------EKLSP-LGVPVIGVPENYD-FD-SKRIEFPKFYELIKEDFD--- 188 (560)
T ss_pred cccCHHHHHHHHHhcCCEEEEECHHHH---------HHHHh-cCCcEEecCcccc-cc-cCccCcccHHHHhhcCCc---
Confidence 999999999999999999999987532 11111 1112222211000 00 000112344444433221
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH----hcCC-CCCCEEEEecCccccchhh-HHHHh
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDL-KVGDVYCWPTNLGWVMGPV-ILFSS 418 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~-~~~~~ 418 (660)
........++++++|+|||||||.||||+++|+++...+..... .+.. ..+++++..+|++|..++. .++.+
T Consensus 189 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 266 (560)
T PLN02574 189 --FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGL 266 (560)
T ss_pred --ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHH
Confidence 11122346789999999999999999999999999877664432 1222 3568889999999998874 46678
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC-CCCCccCccEEEeecCCCChhhHHHHHhhCCC
Q 006121 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (660)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~-~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~ 497 (660)
+..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.... ...+++++|.+++||+++++++.+++.+.+++
T Consensus 267 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 345 (560)
T PLN02574 267 LSLGSTIVVMR-RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH 345 (560)
T ss_pred HhcCCEEEEec-CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCC
Confidence 88999999886 57899999999999999999999999999876532 34568899999999999999999999888877
Q ss_pred CceeccccccccccccccCCc-CCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCccccc
Q 006121 498 NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGASDRLL 570 (660)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~ 570 (660)
+++++.||+||++...+.... ......+++|+|+++++++|+| ++|+++|.|+. |||+| + .||++
T Consensus 346 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~--Gei~v~g~~~~~GY~~------ 417 (560)
T PLN02574 346 VDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGVMKGYLN------ 417 (560)
T ss_pred CcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC--eEEEEECcchhhhhcC------
Confidence 899999999999864432222 2224567899999999999999 78999999997 99999 3 35554
Q ss_pred CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 571 ~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
+++.|++.|..+ +||+|||+|++++||+++++||.||+||++|+||++.|||++|.+||+|.+++|+...+..
T Consensus 418 ~~~~t~~~~~~~------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~ 491 (560)
T PLN02574 418 NPKATQSTIDKD------GWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKEC 491 (560)
T ss_pred ChhHhhhhccCC------CCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCC
Confidence 777787777533 3999999999999999999999999999999999999999999999999999988765543
Q ss_pred cceeeeecc
Q 006121 650 KLELIFYFS 658 (660)
Q Consensus 650 ~~~l~a~~~ 658 (660)
+..+++|+.
T Consensus 492 g~~~~a~v~ 500 (560)
T PLN02574 492 GEIPVAFVV 500 (560)
T ss_pred CcceEEEEE
Confidence 345666653
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-59 Score=519.48 Aligned_cols=431 Identities=19% Similarity=0.191 Sum_probs=345.9
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
+++|+++|+++.+.+ +++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 34 ~~~~~~~a~~~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 107 (537)
T PLN02246 34 SEFSDRPCLIDGATG------RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANP 107 (537)
T ss_pred HhCCCCeEEEecCCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCC
Confidence 578999999875321 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (660)
.++.+++..++++++++++|+++... +.+...........+.+.... .....+.++......
T Consensus 108 ~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~---- 169 (537)
T PLN02246 108 FYTPAEIAKQAKASGAKLIITQSCYV------DKLKGLAEDDGVTVVTIDDPP--------EGCLHFSELTQADEN---- 169 (537)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccchH------HHHHHHhhcCCceEEEeCCCC--------CCceeHHHHhcCCCC----
Confidence 99999999999999999999987532 111222111111222222110 112334444332211
Q ss_pred CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH----hcCCCCCCEEEEecCccccchhh-HHHHhhh
Q 006121 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (660)
Q Consensus 346 ~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~ 420 (660)
..+.....+++++|++|||||||+||||+++|+++.+.+.+... .+.++++|++++.+|++|..++. .++.++.
T Consensus 170 -~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~ 248 (537)
T PLN02246 170 -ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLR 248 (537)
T ss_pred -CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHh
Confidence 11223456799999999999999999999999999877665433 46788999999999999998874 4678899
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.++++.+
T Consensus 249 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 327 (537)
T PLN02246 249 VGAAILIMP-KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVL 327 (537)
T ss_pred cCCEEEEeC-CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeE
Confidence 999999987 4678899999999999999999999999987665555668899999999999999999999998888889
Q ss_pred eccccccccccccccCCc----CCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCccccc
Q 006121 501 IESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGASDRLL 570 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~ 570 (660)
++.||+||++.+++.... ......+++|+|+++++++|+| ++++++|.|+. |||+| + .||++
T Consensus 328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~------ 399 (537)
T PLN02246 328 GQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--GEICIRGPQIMKGYLN------ 399 (537)
T ss_pred eccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCc--eEEEEECCchhccccC------
Confidence 999999999864432211 1123456899999999999999 57999999997 99999 3 34544
Q ss_pred CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 571 ~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
+++.++.+|.. ++||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|+...+..
T Consensus 400 ~~~~~~~~~~~------~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~ 473 (537)
T PLN02246 400 DPEATANTIDK------DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVA 473 (537)
T ss_pred CchhhhhcccC------CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccC
Confidence 66677766643 34999999999999999999999999999999999999999999999999999888754433
Q ss_pred cceeeeec
Q 006121 650 KLELIFYF 657 (660)
Q Consensus 650 ~~~l~a~~ 657 (660)
+..+++++
T Consensus 474 ~~~~~~~v 481 (537)
T PLN02246 474 GEVPVAFV 481 (537)
T ss_pred CceeEEEE
Confidence 34455554
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=534.81 Aligned_cols=453 Identities=16% Similarity=0.128 Sum_probs=334.1
Q ss_pred cCCCCCCcEEEEEe-----------cCC----CCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHH
Q 006121 185 HRRKEDNTVAIVWR-----------EDR----CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248 (660)
Q Consensus 185 ~a~~~pd~~Av~~~-----------~~~----~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vv 248 (660)
.++++||++|+.+. ++. ...+++..+||+||.++++++|++|.+. +++||+|+|+++|+++|++
T Consensus 67 ~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~ 146 (696)
T PLN02387 67 SCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLI 146 (696)
T ss_pred HHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHH
Confidence 34789999999542 110 0124566799999999999999999999 9999999999999999999
Q ss_pred HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCC---
Q 006121 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGI--- 323 (660)
Q Consensus 249 a~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--- 323 (660)
++|||+++|+++|||++.++++++.++|++++++++|++.... ..+..+....+. .++.+.........
T Consensus 147 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 220 (696)
T PLN02387 147 ALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL------KKLIDISSQLETVKRVIYMDDEGVDSDSSLS 220 (696)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH------HHHHHHhhccCCceEEEEECCCCchhhhhhh
Confidence 9999999999999999999999999999999999999986432 222222222222 22333221110000
Q ss_pred -CCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhc-CCCCCCEEE
Q 006121 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 401 (660)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~l 401 (660)
.......+|+++...... .+ .......++|+++|+|||||||+||||+++|++++..+......+ .++++|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l 296 (696)
T PLN02387 221 GSSNWTVSSFSEVEKLGKE--NP--VDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYL 296 (696)
T ss_pred ccCCcEEEEHHHHHHhhcc--CC--CCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEE
Confidence 001112356666544322 11 112234679999999999999999999999999988777655443 578999999
Q ss_pred EecCccccchhhHHHHhhhcCcEEEEecCCC-------ChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCC--------
Q 006121 402 WPTNLGWVMGPVILFSSFLNGATLALYQGSP-------LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-------- 466 (660)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~-------~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~-------- 466 (660)
+++|++|.++....+..+..|+++.+..... .+..+++.++++++|++.++|+++..|.+.....
T Consensus 297 ~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~ 376 (696)
T PLN02387 297 AYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLA 376 (696)
T ss_pred EECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHH
Confidence 9999999998865556677788776643210 1234667899999999999999999886431000
Q ss_pred -------------------------CC-------------Cc-cCccEEEeecCCCChhhHHHHHhhCCCCceecccccc
Q 006121 467 -------------------------GL-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (660)
Q Consensus 467 -------------------------~~-------------~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (660)
.. .+ +++|.+++||+++++++.+++...+ +++++++||+|
T Consensus 377 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~T 455 (696)
T PLN02387 377 KKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLT 455 (696)
T ss_pred HHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechh
Confidence 00 01 5899999999999999987776555 58899999999
Q ss_pred ccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcC---CCCCCceeEEEE-eccccCCcccccCccccccccccc
Q 006121 508 ELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPY---PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGM 582 (660)
Q Consensus 508 E~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~v---p~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~ 582 (660)
|+++..+.... .....+++|+|+++++++|+| +++... .++.. |||+| ++..+.+ ||.+++.|++.|..+
T Consensus 456 Et~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~--GEi~vrGp~v~~G--Y~~~pe~T~~~f~~d 530 (696)
T PLN02387 456 ETCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPR--GEIVIGGPSVTLG--YFKNQEKTDEVYKVD 530 (696)
T ss_pred hcccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCC--ceEEeccCcccch--hcCCHHHHhhhhccc
Confidence 99865443332 234567899999999999998 554322 22333 99999 4332221 222888999998644
Q ss_pred ccCCCceeEeeCceEEEecCceEEEEeccCCcccc-CceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeec
Q 006121 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYF 657 (660)
Q Consensus 583 p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki-~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~ 657 (660)
+ +|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+++|+. +.....++|.+
T Consensus 531 ~--~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g--~~~~~~~~a~v 602 (696)
T PLN02387 531 E--RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHA--DPFHSYCVALV 602 (696)
T ss_pred c--CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEe--cCCcceEEEEE
Confidence 3 35579999999999999999999999999997 599999999999999999999988875 33344555554
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-59 Score=519.66 Aligned_cols=439 Identities=19% Similarity=0.177 Sum_probs=353.9
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++++|+++|+++.+. ++||+||.++++++|+.|.+. +++|++|+|+++|++++++++|||+++|++++|+
T Consensus 20 a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 91 (546)
T PRK08314 20 ARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPV 91 (546)
T ss_pred HHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeec
Confidence 378999999999887 999999999999999999986 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCC-----------------CCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDV-----------------GIPL 325 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-----------------~~~~ 325 (660)
+|.++.+++..++++++++++++++.... .+.......... .++........ ....
T Consensus 92 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (546)
T PRK08314 92 NPMNREEELAHYVTDSGARVAIVGSELAP------KVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA 165 (546)
T ss_pred CcCcCHHHHHHHHHhCCCeEEEEccchhh------hHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence 99999999999999999999999875431 111111111111 11111000000 0000
Q ss_pred CCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecC
Q 006121 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405 (660)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~ 405 (660)
..+...|++....... .......++++|+|+|||||||.||||+++|+++++.+......++++++|++++..|
T Consensus 166 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p 239 (546)
T PRK08314 166 PGGVVAWKEALAAGLA------PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLP 239 (546)
T ss_pred ccccccHHHHhcccCC------CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcC
Confidence 1123445555433211 1223446789999999999999999999999999998888777888999999999999
Q ss_pred ccccchh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCC
Q 006121 406 LGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN 484 (660)
Q Consensus 406 ~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~ 484 (660)
++|..++ +.++.++.+|+++++.+ ..++..+++.++++++|++.++|+++..++........+++++|.+++||++++
T Consensus 240 ~~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~ 318 (546)
T PRK08314 240 LFHVTGMVHSMNAPIYAGATVVLMP-RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP 318 (546)
T ss_pred chHHHHHHHHHHHHHHcCCeEEecC-CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence 9999987 56789999999999987 467889999999999999999999999998765545567889999999999999
Q ss_pred hhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e---
Q 006121 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F--- 559 (660)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~--- 559 (660)
+++.+++.+.++ .+++|.||+||++...... ........++|+|+++++++|+| +++++++.|.. |||+| +
T Consensus 319 ~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~ 394 (546)
T PRK08314 319 EAVAERLKELTG-LDYVEGYGLTETMAQTHSN-PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEV--GEIVVHGPQV 394 (546)
T ss_pred HHHHHHHHHHcC-CcEEecccccccccceecC-CCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCc--eEEEEECCch
Confidence 999999988774 7899999999998644332 22223456899999999999999 57999999996 99999 3
Q ss_pred -ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCce
Q 006121 560 -PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFK 638 (660)
Q Consensus 560 -~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~ 638 (660)
.||++ +++.|++.|..+ ++.+||+|||+|++++||+++++||.||+||++|+||+|.|||++|.++|+|.
T Consensus 395 ~~gY~~------~~~~t~~~f~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~ 465 (546)
T PRK08314 395 FKGYWN------RPEATAEAFIEI---DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQ 465 (546)
T ss_pred hccccC------ChhHhhhhhhhc---CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchh
Confidence 35554 666777777643 35679999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeecC-cceeeeecc
Q 006121 639 CLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 639 ~a~vv~~~~~~-~~~l~a~~~ 658 (660)
+++|+...+.. +..+++|+.
T Consensus 466 ~~~v~~~~~~~~~~~~~a~v~ 486 (546)
T PRK08314 466 EACVIATPDPRRGETVKAVVV 486 (546)
T ss_pred eEEEEeCCCcccCceeEEEEE
Confidence 99888765433 456777754
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-59 Score=529.89 Aligned_cols=423 Identities=16% Similarity=0.166 Sum_probs=327.7
Q ss_pred CCCCCcEEEEEecCC-CCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec-C
Q 006121 187 RKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-A 264 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl-~ 264 (660)
+.+|+++|+++.+.. ...+..+.+||+||+++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|+ +
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~ 111 (631)
T PRK07769 32 KVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFD 111 (631)
T ss_pred HhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCC
Confidence 678999999985421 01123458999999999999999997669999999999999999999999999999999999 5
Q ss_pred CCCC--HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC----CcEEEEcCCCCCCCCCCCCCCcchhhhhcc
Q 006121 265 DSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (660)
Q Consensus 265 p~~p--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 338 (660)
+..+ .+++.+++++++++++|+++... +.+.......+ ..++.+... .+...
T Consensus 112 ~~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~- 169 (631)
T PRK07769 112 PAEPGHVGRLHAVLDDCTPSAILTTTDSA------EGVRKFFRARPAKERPRVIAVDAV---------------PDEVG- 169 (631)
T ss_pred CCccchHHHHHHHHHhCCCCEEEEChHHH------HHHHHHHhhccccccceEEEcccc---------------ccccc-
Confidence 6665 68999999999999999987532 11111111111 111111100 00000
Q ss_pred CCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHh
Q 006121 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 418 (660)
. ........++++++|+|||||||+||||+++|+++...+......+++++++++++..|++|+.++..++.+
T Consensus 170 --~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~ 242 (631)
T PRK07769 170 --A-----TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLP 242 (631)
T ss_pred --c-----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHH
Confidence 0 011123457899999999999999999999999998888777777889999999999999999999888888
Q ss_pred hhcCcEEEEecC-CC--ChhhHHHHHHHcCC---eEEeecHHHHHHHHhcC---C--CCCCCccCccEEEeecCCCChhh
Q 006121 419 FLNGATLALYQG-SP--LERSFGKFVQDAGV---TVLGTVPSLVKAWRNTN---C--LEGLDWTKIRSFASTGETSNVDD 487 (660)
Q Consensus 419 l~~G~~lv~~~~-~~--~~~~l~~~i~~~~v---t~l~~~P~~l~~l~~~~---~--~~~~~l~~lr~v~~gGe~l~~~~ 487 (660)
++.|+++++.++ .+ ++..+++.++++++ |++..+|+++..+.... . ....++++||.+++||+++++++
T Consensus 243 ~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~ 322 (631)
T PRK07769 243 ALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPAS 322 (631)
T ss_pred HhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHH
Confidence 899999999864 23 78889999999886 78999999887766421 1 11457899999999999999999
Q ss_pred HHHHHhhCC-----CCceeccccccccccccccCCcCCC--------------------------CcccccCcCCCCceE
Q 006121 488 DLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGL 536 (660)
Q Consensus 488 ~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~~~~~ 536 (660)
.+++.+.++ ...++|.||+||++..++....... ....++|+|++++++
T Consensus 323 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~ 402 (631)
T PRK07769 323 MRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWA 402 (631)
T ss_pred HHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEE
Confidence 999888762 2459999999999764433211110 012479999999999
Q ss_pred EEEc-CCCCcCCCCCCceeEEEE-e----ccccCCcccccCccccccccccccc-----------CCCceeEeeCceEEE
Q 006121 537 VILD-ECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYFRGMPM-----------YKGMCLRRHGDIIKR 599 (660)
Q Consensus 537 ~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f~~~p~-----------~~~~r~y~TGDl~~~ 599 (660)
+|+| ++++++|.|+. |||+| + .||++ +++.|++.|...+. ..+.+||||||+|++
T Consensus 403 ~ivd~~~g~~~~~ge~--GEl~v~gp~v~~GY~~------~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~ 474 (631)
T PRK07769 403 VIVDPETASELPDGQI--GEIWLHGNNIGTGYWG------KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY 474 (631)
T ss_pred EEEcCCCCcCCCCCCE--EEEEecCCCccccccC------ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccE
Confidence 9999 57999999996 99999 4 45554 67788888864221 123479999999999
Q ss_pred ecCceEEEEeccCCccccCceeecchHHHHhhcC-CCCcee--eEEEEEee
Q 006121 600 TVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP-RSSFKC--LHIYAWLY 647 (660)
Q Consensus 600 ~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~-~~~V~~--a~vv~~~~ 647 (660)
+ ||+|+|+||.||+||++|+||+|.|||++|.+ ||+|.+ ++|+...+
T Consensus 475 ~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d 524 (631)
T PRK07769 475 F-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPA 524 (631)
T ss_pred E-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecc
Confidence 5 99999999999999999999999999999986 899997 66655444
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=512.09 Aligned_cols=437 Identities=22% Similarity=0.230 Sum_probs=355.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+++.+. ++||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 15 ~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 86 (513)
T PRK07656 15 ARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLN 86 (513)
T ss_pred HHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 468899999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+.++.+++..++++++++++++++.... .........+. ..+++....... .......+|+++......
T Consensus 87 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-- 156 (513)
T PRK07656 87 TRYTADEAAYILARGDAKALFVLGLFLG------VDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGDP-- 156 (513)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhHH------HHHHHHhccCCccEEEEEcCcccc--cCccccccHHHHHhcCCC--
Confidence 9999999999999999999999875321 11111122222 122221111100 011123456666543321
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhhcC
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNG 422 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G 422 (660)
........++++++++|||||||.||+|.++|+++.+.+.+....+++++++++++..|+.|++++. .++.++..|
T Consensus 157 ---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G 233 (513)
T PRK07656 157 ---AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG 233 (513)
T ss_pred ---CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcC
Confidence 1122345778999999999999999999999999998888888888999999999999999998874 578999999
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.++...++|
T Consensus 234 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
T PRK07656 234 ATILPLP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLT 312 (513)
T ss_pred ceEEecC-cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEe
Confidence 9999865 467899999999999999999999999999876655567889999999999999999999988876338999
Q ss_pred cccccccccccccCCcCCCC--cccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCcccc
Q 006121 503 SCGGTELSSAYIQGSLLQPQ--AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~--~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t 575 (660)
.||+||++++.......... ...++|+|+++++++|+|++++++|.|.. |||++ ..||++ +++.+
T Consensus 313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~ 384 (513)
T PRK07656 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV--GELLVRGPNVMKGYYD------DPEAT 384 (513)
T ss_pred EEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCc--eEEEEEcchhhhhhcC------CHHHH
Confidence 99999998755544332222 25789999999999999999999999997 99999 345554 55566
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~ 654 (660)
...|..+ .||+|||+|++++||+++++||.||+||++|.||+|.|||++|.++|+|.+++|+...+.. +..+.
T Consensus 385 ~~~~~~~------~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~ 458 (513)
T PRK07656 385 AAAIDAD------GWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGK 458 (513)
T ss_pred hhhhccC------CceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEE
Confidence 6555432 3999999999999999999999999999999999999999999999999999888765433 44566
Q ss_pred eecc
Q 006121 655 FYFS 658 (660)
Q Consensus 655 a~~~ 658 (660)
+|+.
T Consensus 459 ~~v~ 462 (513)
T PRK07656 459 AYVV 462 (513)
T ss_pred EEEE
Confidence 6654
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=517.60 Aligned_cols=438 Identities=18% Similarity=0.159 Sum_probs=342.8
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++.+|+++|+++.++ .+||+||.++++++|++|.+ . +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l 105 (562)
T PRK05677 34 CQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNT 105 (562)
T ss_pred HHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeec
Confidence 467999999998776 89999999999999999997 6 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCC-------------------CC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG-------------------IP 324 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~ 324 (660)
+|.++.+++.+++++++++++|++..... .+.++........+++........ ..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK05677 106 NPLYTAREMEHQFNDSGAKALVCLANMAH------LAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAY 179 (562)
T ss_pred CCCCCHHHHHHHHhccCceEEEEecchhh------hHHHhhhccCcceeEEecccccccchhhhhcccchhhcccccccc
Confidence 99999999999999999999999764321 112222111112222211100000 00
Q ss_pred CCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC--CCC-CCEEE
Q 006121 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKV-GDVYC 401 (660)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~-~~~~l 401 (660)
..++...+.+.+..... .........++++++++|||||||+||||+++|+++...+......+. +.. .++++
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 180 HLPQAVKFNDALAKGAG----QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred CCcccccHHHHHhcCCC----CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 00112233333322211 111122346799999999999999999999999999877655544433 333 46788
Q ss_pred EecCccccchh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeec
Q 006121 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (660)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG 480 (660)
+..|+.|..++ +.++.++..|++.++.+...++..+++.|+++++|+++.+|+++..|.+.......+++++|.+++||
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG 335 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG 335 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence 99999998887 46778888999888877666888999999999999999999999999876544445678999999999
Q ss_pred CCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e
Q 006121 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F 559 (660)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~ 559 (660)
+++++++.+++.+.+ ++++++.||+||++.+.... ......++++|+|+++++++|+|++++++|.|+. |||+| +
T Consensus 336 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~-~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g 411 (562)
T PRK05677 336 MALQLATAERWKEVT-GCAICEGYGMTETSPVVSVN-PSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEV--GELCVKG 411 (562)
T ss_pred ccCCHHHHHHHHHHc-CCCeeccCCccccCcceeec-CccCCCCCccCccCCCCEEEEECCCCCCCCCCCC--eEEEEec
Confidence 999999998888765 58899999999988654332 2233455789999999999999999999999996 99999 3
Q ss_pred ----ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCC
Q 006121 560 ----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRS 635 (660)
Q Consensus 560 ----~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~ 635 (660)
+||++ +++.|++.|..+ +||+|||+|++++||+++|.||+||+||++|++|+|.|||++|.+||
T Consensus 412 ~~~~~gY~~------~~~~t~~~~~~~------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~ 479 (562)
T PRK05677 412 PQVMKGYWQ------RPEATDEILDSD------GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALP 479 (562)
T ss_pred CccchhhcC------CchhhhhccCCC------CcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCC
Confidence 45555 777888888643 39999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEEeecC-cceeeeec
Q 006121 636 SFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 636 ~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
+|.+++|+...+.. +..+++|+
T Consensus 480 ~v~~~~v~g~~~~~~g~~~~~~v 502 (562)
T PRK05677 480 GVLQCAAIGVPDEKSGEAIKVFV 502 (562)
T ss_pred CccEEEEEeccCccCCceEEEEE
Confidence 99999888765443 34555554
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=509.34 Aligned_cols=415 Identities=19% Similarity=0.194 Sum_probs=337.7
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
++++|+++|+.+.+. ++||.||.++++++|++|.+...+|++|+|+++|++++++++|||+++|++++|+++
T Consensus 11 a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 82 (487)
T PRK07638 11 ASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDI 82 (487)
T ss_pred HHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCc
Confidence 478999999999877 999999999999999999988338999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (660)
.++.+++.++++++++++++++........ . ....++.+. .+.+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---------~-~~~~~~~~~---------------~~~~~~~~~~~---- 133 (487)
T PRK07638 83 KWKQDELKERLAISNADMIVTERYKLNDLP---------D-EEGRVIEID---------------EWKRMIEKYLP---- 133 (487)
T ss_pred cCCHHHHHHHHHhCCCCEEEEecccccchh---------h-ccceEEEeh---------------hhhhhhhhccc----
Confidence 999999999999999999999875321110 0 001111110 11111111110
Q ss_pred CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEE
Q 006121 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (660)
Q Consensus 346 ~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~l 425 (660)
.........+++++|+|||||||+||||+++|++++..+......++++++|+++...++.|+.++..++.++..|+++
T Consensus 134 -~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~ 212 (487)
T PRK07638 134 -TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTV 212 (487)
T ss_pred -cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEE
Confidence 0111122346789999999999999999999999988888777888899999999999999998888889999999999
Q ss_pred EEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccc
Q 006121 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (660)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (660)
++.+ .+++..+++.|+++++|++.++|+++..|.+... . ..+.+.++++|+.++.++.+++.+.+++++++|.||
T Consensus 213 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG 287 (487)
T PRK07638 213 HLMR-KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYG 287 (487)
T ss_pred EEcC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEec
Confidence 9886 5789999999999999999999999999987632 1 345666788999999999999999888889999999
Q ss_pred ccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccccccccc
Q 006121 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYFR 580 (660)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f~ 580 (660)
+||++..+............++|+|+++++++|+|++|+++|+|+. |||+| + .||++ +++.+.+.+
T Consensus 288 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~~~~~- 358 (487)
T PRK07638 288 ASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEI--GTVYVKSPQFFMGYII------GGVLARELN- 358 (487)
T ss_pred CCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCC--eEEEEecccceeeecC------CHHHHhhhc-
Confidence 9999875444333334456789999999999999999999999996 99999 3 34444 444443322
Q ss_pred ccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 581 ~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
..+||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|++++|+...+.. +..+.+++.
T Consensus 359 ------~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~ 431 (487)
T PRK07638 359 ------ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIK 431 (487)
T ss_pred ------cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEE
Confidence 234999999999999999999999999999999999999999999999999999988766543 455666653
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=517.62 Aligned_cols=407 Identities=17% Similarity=0.100 Sum_probs=313.9
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
++++|+++|+++.+. +.++++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||+++|++++ ++|
T Consensus 12 ~~~~~~~~a~~~~~~----~~~~~~ty~el~~~~~~lA~~L~~~-~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~~ 85 (525)
T PRK05851 12 MTASGRDLVVLDRES----GLWRRHPWPEVHGRAENVAARLLDR-DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-ILP 85 (525)
T ss_pred hcCCCCceEEeCCCC----CcceeecHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CCC
Confidence 478999999998764 3456999999999999999999987 8999999999999999999999999999865 444
Q ss_pred C--------CCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhc
Q 006121 266 S--------FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (660)
Q Consensus 266 ~--------~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (660)
. ...+++.+++++++++++|+++... ..+..... . +.+. .+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~-~-~~~~---------------~~~~~~~ 139 (525)
T PRK05851 86 GPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAVDS-S-VTVH---------------DLATAAH 139 (525)
T ss_pred CCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHhhc-c-cccc---------------ccccccc
Confidence 2 2345666789999999999986432 11111000 0 0000 0000000
Q ss_pred cCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCC-CCCEEEEecCccccchhhHHH
Q 006121 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK-VGDVYCWPTNLGWVMGPVILF 416 (660)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 416 (660)
.. .+. ......++++|||+|||||||+||||+++|+++.+.+.+....++++ ++|++++.+|++|+++++.++
T Consensus 140 ~~----~~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 213 (525)
T PRK05851 140 TN----RSA--SLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLL 213 (525)
T ss_pred cc----ccc--cCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHH
Confidence 00 000 01123678999999999999999999999999999888888888888 999999999999999998899
Q ss_pred HhhhcCcEEEEecC-CC--ChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC-CCCCCccCccEEEeecCCCChhhHHHHH
Q 006121 417 SSFLNGATLALYQG-SP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-LEGLDWTKIRSFASTGETSNVDDDLWLS 492 (660)
Q Consensus 417 ~~l~~G~~lv~~~~-~~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~-~~~~~l~~lr~v~~gGe~l~~~~~~~~~ 492 (660)
.+++.|+++++.+. .+ ++..+++.++++++|++..+|.++..+.+... ....++++||.+++||+++++++.+++.
T Consensus 214 ~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 293 (525)
T PRK05851 214 TAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFA 293 (525)
T ss_pred HHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHH
Confidence 99999999999763 22 57789999999999988666665555543221 2345678999999999999999988887
Q ss_pred hhC---C--CCceeccccccccccccccCCcC--------------CCCcccccCcCCCCceEEEEcCCC-CcCCCCCCc
Q 006121 493 SKA---W--YNAIIESCGGTELSSAYIQGSLL--------------QPQAFGAFSTATMTAGLVILDECG-VPYPDDQPC 552 (660)
Q Consensus 493 ~~~---~--~~~l~n~YG~TE~~~~~~~~~~~--------------~~~~~~~iG~p~~~~~~~vld~~~-~~vp~G~~g 552 (660)
+.+ + ..+++|.||+||++..++..... .....+++|+|++|++++|+|+++ .++|.|+.
T Consensus 294 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~- 372 (525)
T PRK05851 294 TAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREI- 372 (525)
T ss_pred HHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCe-
Confidence 642 1 24599999999998644432211 012346899999999999999776 46899986
Q ss_pred eeEEEE-ec----cccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHH
Q 006121 553 VGEVGL-FP----LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPL 627 (660)
Q Consensus 553 iGel~v-~~----~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eI 627 (660)
|||+| ++ ||++ +++. ..++||+|||+|+++ ||+|+|+||+||+||++|+||+|.||
T Consensus 373 -GEl~v~g~~~~~GY~~------~~~~-----------~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eI 433 (525)
T PRK05851 373 -GEIEIRGASMMSGYLG------QAPI-----------DPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEI 433 (525)
T ss_pred -EEEEEecCchhhcccc------CCcc-----------CCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHH
Confidence 99999 33 4544 2221 123499999999986 89999999999999999999999999
Q ss_pred HHhhcCCCCceeeEEEEEeecCc
Q 006121 628 TFLSSPRSSFKCLHIYAWLYFHK 650 (660)
Q Consensus 628 E~~L~~~~~V~~a~vv~~~~~~~ 650 (660)
|++|.+||+|++++|++..+...
T Consensus 434 E~~l~~~p~V~~~~vv~~~~~~~ 456 (525)
T PRK05851 434 ERVAAQVRGVREGAVVAVGTGEG 456 (525)
T ss_pred HHHHHhCCCcccceEEEEEecCC
Confidence 99999999999999988766543
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=457.52 Aligned_cols=442 Identities=19% Similarity=0.197 Sum_probs=369.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|++++++ .+||+||+++++++|..|++. +++||+|.+.+||..+++++++|.+|+|+++|.-
T Consensus 37 ~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlA 108 (542)
T COG1021 37 HAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLA 108 (542)
T ss_pred HHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhc
Confidence 3489999999999988 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
-|.+...+|.+..+.+.++++|.+... ..+..-++..++....+....++...+... .......+.....
T Consensus 109 LpsHr~~Ei~~f~~~~e~~~~i~~~~~-~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~-------~~~~~~~~~~~a~-- 178 (542)
T COG1021 109 LPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFARELVAKHPTLRHVIVAGEAEH-------PSVLEAALCHPAG-- 178 (542)
T ss_pred cchhhHHHHHHHHHhhcchheeechhh-cccCcHHHHHHHHhhCCcceEEEEccCCCC-------cchhhhhhhCccc--
Confidence 999999999999999999999998753 344555667777777776444433322110 1112222222111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~~ 421 (660)
...+..+.+++++||...+.||||.||-+..+|..+..++....+..+++..+++++.+|..|.+.+. .+++.+++
T Consensus 179 --~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~a 256 (542)
T COG1021 179 --LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA 256 (542)
T ss_pred --cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeee
Confidence 11223456778999999999999999999999999988888888888999999999999999887763 58899999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
||++|+.+ +++|...+.+|++|+||+.-++|.+...|++.......+++|||.+-+||..+++.+.+++...++ |.+-
T Consensus 257 gG~VVla~-~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg-C~LQ 334 (542)
T COG1021 257 GGTVVLAP-DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLG-CQLQ 334 (542)
T ss_pred ccEEEECC-CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhC-chHH
Confidence 99999987 678899999999999999999999999999998888999999999999999999999999988774 8999
Q ss_pred ccccccccccccccCCcCCCCcccccCcCC-CCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCcccccccc
Q 006121 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYF 579 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f 579 (660)
+.+||.|--++++-.....+.-..+-|+|+ |.-+++|+|++|++|++|++ |+|.. +|-.+++ ||..++.++..|
T Consensus 335 QVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~--G~LltRGPYTirG--Yyrap~HNa~aF 410 (542)
T COG1021 335 QVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEV--GELLTRGPYTIRG--YYRAPEHNARAF 410 (542)
T ss_pred HHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCc--ceeeecCCeeeee--eccCchhhhhcc
Confidence 999999976654432222222234789998 67899999999999999997 99998 5544443 333677788999
Q ss_pred cccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccceeeeecc
Q 006121 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLELIFYFS 658 (660)
Q Consensus 580 ~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l~a~~~ 658 (660)
.++. +|+|||++++|+||+|.+.||.||||+.+|++|--+|||+.|..||.|.+|++|+..+. =+++.++|+.
T Consensus 411 ~a~G------FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv 484 (542)
T COG1021 411 DADG------FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIV 484 (542)
T ss_pred CcCC------ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEE
Confidence 8776 79999999999999999999999999999999999999999999999999999887643 3666777753
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=523.82 Aligned_cols=434 Identities=19% Similarity=0.171 Sum_probs=330.5
Q ss_pred CCCCCCcEEEEEecCCC-CCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec-
Q 006121 186 RRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI- 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl- 263 (660)
++++|+++|+++.+... ..+.++.+||+||.++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 44 ~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~ 123 (612)
T PRK12476 44 IANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLF 123 (612)
T ss_pred HHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCChhHHHHHHHHHHcCceeEecC
Confidence 36789999999854210 1123458999999999999999997669999999999999999999999999999999999
Q ss_pred CCCCC--HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC----CcEEEEcCCCCCCCCCCCCCCcchhhhhc
Q 006121 264 ADSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (660)
Q Consensus 264 ~p~~p--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (660)
++.++ .+++.+++++++++++|+++... +.........+ ..++.+.. +..
T Consensus 124 ~~~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~------------------~~~ 179 (612)
T PRK12476 124 APELPGHAERLDTALRDAEPTVVLTTTAAA------EAVEGFLRNLPRLRRPRVIAIDA------------------IPD 179 (612)
T ss_pred CCCcchhHHHHHHHHHhCCCCEEEEcHHHH------HHHHHHHhhcccccCceEEEecc------------------ccc
Confidence 68887 88999999999999999987532 11111111111 11222210 000
Q ss_pred cCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC-CCCCCEEEEecCccccchhhHHH
Q 006121 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVILF 416 (660)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 416 (660)
... .........+++++||+|||||||+||||+++|+++.+.+......++ +.+++++++++|++|+.++..++
T Consensus 180 ~~~-----~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~ 254 (612)
T PRK12476 180 SAG-----ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIG 254 (612)
T ss_pred ccc-----ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHH
Confidence 000 011112345689999999999999999999999999877766666677 78899999999999999997777
Q ss_pred HhhhcCcEEEEecC-CC--ChhhHHHHHH--HcCCeEEeecHHHHHHHHhcCC----CCCCCccCccEEEeecCCCChhh
Q 006121 417 SSFLNGATLALYQG-SP--LERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDD 487 (660)
Q Consensus 417 ~~l~~G~~lv~~~~-~~--~~~~l~~~i~--~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~lr~v~~gGe~l~~~~ 487 (660)
.+++.|+++++..+ .+ ++..+++.++ ++++|++..+|+++..++.... ....+++++| +++||+++++++
T Consensus 255 ~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~ 333 (612)
T PRK12476 255 FPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDA 333 (612)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHH
Confidence 77777887777653 22 7889999995 5899999999999887765321 1234688999 999999999999
Q ss_pred HHHHHhhCC-----CCceeccccccccccccccCCcCCC--------------------------CcccccCcCCCCceE
Q 006121 488 DLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGL 536 (660)
Q Consensus 488 ~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~~~~~ 536 (660)
.+++.+.++ ..+++|.||+||++..++....... ...+++|+|++|+++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v 413 (612)
T PRK12476 334 VTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWA 413 (612)
T ss_pred HHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEE
Confidence 998887652 2459999999998754332211100 012478999999999
Q ss_pred EEEcCC-CCcCCCCCCceeEEEE-e----ccccCCcccccCccccccccccccc------------CCCceeEeeCceEE
Q 006121 537 VILDEC-GVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYFRGMPM------------YKGMCLRRHGDIIK 598 (660)
Q Consensus 537 ~vld~~-~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f~~~p~------------~~~~r~y~TGDl~~ 598 (660)
+|+|++ |+++|.|+. |||++ + .||++ +++.|++.|...+. .++.+||+|||+|+
T Consensus 414 ~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~ 485 (612)
T PRK12476 414 VIVDPDTGAELPDGEV--GEIWLHGDNIGRGYWG------RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGV 485 (612)
T ss_pred EEEeCCCCcCCCCCCE--EEEEEcCCcccccccC------ChHHHHHHHhhhhccccccccccccccCCCCeeeccccce
Confidence 999987 999999996 99999 3 45554 77889888863210 12456999999999
Q ss_pred EecCceEEEEeccCCccccCceeecchHHHHhhcC-CCCceeeEEEEE--eecCcceeeeecc
Q 006121 599 RTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP-RSSFKCLHIYAW--LYFHKLELIFYFS 658 (660)
Q Consensus 599 ~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~-~~~V~~a~vv~~--~~~~~~~l~a~~~ 658 (660)
++ ||+|+|+||+||+||++|+||+|.|||++|.+ ||.|.+++|++. .+..++.++++++
T Consensus 486 ~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~ 547 (612)
T PRK12476 486 YL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAE 547 (612)
T ss_pred eE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEE
Confidence 85 99999999999999999999999999999985 899999544433 3444566777654
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=507.38 Aligned_cols=442 Identities=18% Similarity=0.178 Sum_probs=343.7
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+++.+. ..+....+||+||+++++++|++|++. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 32 ~~~~p~~~a~~~~~~--~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 109 (538)
T TIGR03208 32 VANCPDKPALTAYRD--GHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLM 109 (538)
T ss_pred HHHCCCceEEEeecc--cCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccC
Confidence 367899999987322 011234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
|.++.+++.+++++++++++++++.+. ...............+. .++++... ....++.++......
T Consensus 110 ~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 178 (538)
T TIGR03208 110 PIFRERELSFMLNHADSKVFVVPSVFR-GFDHAAMARELQSKLPALRQVVVIDGD----------GDDSFDRVLMTPERD 178 (538)
T ss_pred cccCHHHHHHHHHhcCCeEEEEccccc-cccHHHHHHHHhccCCcceEEEEecCC----------CCcCHHHHhhccccc
Confidence 999999999999999999999987542 11111111112222221 12222111 111233332211100
Q ss_pred CCCC---CCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHh
Q 006121 343 PRPN---YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (660)
Q Consensus 343 ~~~~---~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 418 (660)
..+. ........++++|+++|||||||.||||+++|+++...+......++++.++++++.+|++|..+. +.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 258 (538)
T TIGR03208 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMP 258 (538)
T ss_pred cccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHH
Confidence 0000 011123467899999999999999999999999999888888788889999999999999998876 568899
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCC
Q 006121 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (660)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (660)
+..|+++++.+ ..++..+++.|+++++|++.++|+++..|.........+++++|.+++||+++++++.+++.+.+ ++
T Consensus 259 l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~ 336 (538)
T TIGR03208 259 LILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GA 336 (538)
T ss_pred HHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CC
Confidence 99999999876 56889999999999999999999999988765433345678999999999999999998888776 48
Q ss_pred ceeccccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-ec----cccCCcccccCc
Q 006121 499 AIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FP----LYLGASDRLLNA 572 (660)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~----~y~~~~~~~~~~ 572 (660)
+++|.||+||++...+..... ......++|+|++|++++|+|+++++++.|+. |||+| ++ ||++ ++
T Consensus 337 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~ 408 (538)
T TIGR03208 337 LIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVRGCSNFGGYLK------RP 408 (538)
T ss_pred eEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC--cEEEEecCcccccccC------Cc
Confidence 899999999998654332211 11223578999999999999999999999997 99999 33 4443 44
Q ss_pred ccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cc
Q 006121 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KL 651 (660)
Q Consensus 573 ~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~ 651 (660)
+.|+ + .+.+||+|||+|++++||+|+++||.||+||++|++|+|.|||++|.+||+|.+++|+...+.. +.
T Consensus 409 ~~~~--~------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~ 480 (538)
T TIGR03208 409 HLNS--T------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGE 480 (538)
T ss_pred cccc--c------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCc
Confidence 4443 1 1345999999999999999999999999999999999999999999999999999888765443 34
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
.+.+++.
T Consensus 481 ~~~a~v~ 487 (538)
T TIGR03208 481 RACAVVV 487 (538)
T ss_pred eEEEEEE
Confidence 5666653
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=504.47 Aligned_cols=440 Identities=19% Similarity=0.201 Sum_probs=357.1
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
+++|+++|+.+.++ ++||+||.++++++|++|++. +++|++|+++++|++++++++|||+++|++++|+++
T Consensus 11 ~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 82 (515)
T TIGR03098 11 ARLPDATALVHHDR--------TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82 (515)
T ss_pred HHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCC
Confidence 67999999999877 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
.++.+++..+++++++++++++.... +.+.......+. ..+.+...... .........|+++......
T Consensus 83 ~~~~~~~~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 152 (515)
T TIGR03098 83 LLKAEQVAHILADCNVRLLVTSSERL------DLLHPALPGCHDLRTLILVGEPAHA--SEGGGESPSWPKLLALGDA-- 152 (515)
T ss_pred CCCHHHHHHHHHcCCCeEEEEccchh------hhhHhhhhcccccceEEEecCcccc--cCCccccccHHHhhccccc--
Confidence 99999999999999999999986432 111111111111 22222211110 0011223456665443221
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
........+++++++|||||||.||||+++|+++...+......+.+.++|++++..|++|+.++..++.++..|+
T Consensus 153 ----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 228 (515)
T TIGR03098 153 ----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGA 228 (515)
T ss_pred ----cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCC
Confidence 1122335678999999999999999999999999988887777788999999999999999999988999999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++++.+ ..++..+++.++++++|++.++|+++..|.+... ...+++++|.+++||+++++++.+.+++.++++.+++.
T Consensus 229 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 306 (515)
T TIGR03098 229 TVVLHD-YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLM 306 (515)
T ss_pred EEEEcC-CCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeee
Confidence 999886 4688999999999999999999999999986532 22457899999999999999999999998877889999
Q ss_pred ccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCccccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~ 578 (660)
||+||++..+...........+++|+|+++++++|+|+++++++.|+. |||++ ..||++ +++.|+++
T Consensus 307 YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~gy~~------~~~~~~~~ 378 (515)
T TIGR03098 307 YGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEE--GELVHRGALVAMGYWN------DPEKTAER 378 (515)
T ss_pred eccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCc--eEEEEcCchhhccccC------Cchhhhhh
Confidence 999999754332222223456789999999999999999999999996 99999 356665 66677777
Q ss_pred cccccc-----CCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccce
Q 006121 579 FRGMPM-----YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLE 652 (660)
Q Consensus 579 f~~~p~-----~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~ 652 (660)
|.+++. ..+.+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|.+||.|.+++|+...+. .+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~ 458 (515)
T TIGR03098 379 FRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQA 458 (515)
T ss_pred hhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCce
Confidence 776543 1234699999999999999999999999999999999999999999999999999988876543 3556
Q ss_pred eeeecc
Q 006121 653 LIFYFS 658 (660)
Q Consensus 653 l~a~~~ 658 (660)
+++++.
T Consensus 459 ~~~~~~ 464 (515)
T TIGR03098 459 IVLVVT 464 (515)
T ss_pred EEEEEE
Confidence 776664
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-58 Score=520.15 Aligned_cols=448 Identities=18% Similarity=0.192 Sum_probs=332.4
Q ss_pred CCCCCCcEEEEEec-CCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++++|+++|+.+.. ..+..+++..+||+||.++++++|+.|.+. +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 52 ~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl 131 (660)
T PLN02430 52 VEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPL 131 (660)
T ss_pred HHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 47899999997643 111223455689999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCC---CCCCCCCcchhhhhcc
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG---IPLREQDLSWKDFLSS 338 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~ 338 (660)
++.++++++.+++++++++++++++... ...+.......+. .++.+........ ........+|++++..
T Consensus 132 ~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (660)
T PLN02430 132 YDTLGPGAVDYIVDHAEIDFVFVQDKKI-----KELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHM 206 (660)
T ss_pred ccCCCHHHHHHHHhccCCCEEEECHHHH-----HHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHh
Confidence 9999999999999999999999986421 0011111111111 1222221110000 0001123467776654
Q ss_pred CCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh-----cCCCCCCEEEEecCccccchhh
Q 006121 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-----IDLKVGDVYCWPTNLGWVMGPV 413 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~ 413 (660)
... .+ .......|+++++|+|||||||.||||+++|+++...+...... .+++++|++++++|++|.++..
T Consensus 207 ~~~--~~--~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~ 282 (660)
T PLN02430 207 GKE--NP--SETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRM 282 (660)
T ss_pred hcc--CC--CCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHH
Confidence 332 11 11123457999999999999999999999999998776654321 2467899999999999998876
Q ss_pred HHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC-----------------------------
Q 006121 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----------------------------- 464 (660)
Q Consensus 414 ~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~----------------------------- 464 (660)
..+.++..|+++++... ++..+++.|++.++|++.++|.+++.+.+...
T Consensus 283 ~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (660)
T PLN02430 283 IEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360 (660)
T ss_pred HHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCC
Confidence 55667899999988753 56789999999999999999999988764200
Q ss_pred --CCCC---C----------c-cCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccC
Q 006121 465 --LEGL---D----------W-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 528 (660)
Q Consensus 465 --~~~~---~----------l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG 528 (660)
.... + + ++||.+++||+++++++.++++ .++.+.++++||+||+++..+..........+++|
T Consensus 361 ~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG 439 (660)
T PLN02430 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG 439 (660)
T ss_pred CCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeeccccCCCCCCcc
Confidence 0000 0 1 5899999999999999866554 44456799999999998654443333333468999
Q ss_pred cCCCCceEEEEc--CCC-CcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCce
Q 006121 529 TATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604 (660)
Q Consensus 529 ~p~~~~~~~vld--~~~-~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~ 604 (660)
+|++++++++.| +.+ .+++.|.. |||+| ++..+.+ |+.+++.|++.|. + +||+|||+|++|+||+
T Consensus 440 ~p~~~~evki~d~~~~g~~~~~~~~~--GEi~vrg~~v~~G--Y~~~~e~t~~~~~-d------Gw~~TGDig~~d~dG~ 508 (660)
T PLN02430 440 APAVYNELRLEEVPEMGYDPLGEPPR--GEICVRGKCLFSG--YYKNPELTEEVMK-D------GWFHTGDIGEILPNGV 508 (660)
T ss_pred CCCCceEEEEEEcCCcCcccCCCCCc--ceEEecCCCcccc--ccCChHHhhhhhh-c------cceeccceEEECCCCc
Confidence 999999999987 333 45555554 99999 4432221 2227788888773 2 2999999999999999
Q ss_pred EEEEeccCCcccc-CceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 605 IIVQGRADDTMNL-GGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 605 l~~~GR~dd~iki-~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
|+|+||+||+||+ +|++|+|.+||++|.+||.|.+++|+. +..+..++|++.
T Consensus 509 l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G--~~~~~~~~A~vv 561 (660)
T PLN02430 509 LKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG--DSFKSMLVAVVV 561 (660)
T ss_pred EEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEe--cCCcceEEEEEE
Confidence 9999999999996 699999999999999999999998876 333556777653
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=511.00 Aligned_cols=447 Identities=18% Similarity=0.172 Sum_probs=351.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+.+ +.+||+||.++++++|+.|.+. +++|++|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l 98 (559)
T PRK08315 25 TAARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTI 98 (559)
T ss_pred HHHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEec
Confidence 34789999999985431 2799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccC-------------CCcEEEEcCCCCCCCCCCCCCCc
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------------PLKAIVLPAIGNDVGIPLREQDL 330 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~ 330 (660)
+|.++.+++..++++++++++++++..... ............. +....++..... ...+..
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 172 (559)
T PRK08315 99 NPAYRLSELEYALNQSGCKALIAADGFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE-----KHPGML 172 (559)
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-----CCcccc
Confidence 999999999999999999999998753211 0000011111110 100011110100 011223
Q ss_pred chhhhhccCCCCC-CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCcccc
Q 006121 331 SWKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409 (660)
Q Consensus 331 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (660)
.|.++........ ...........+++++|++|||||||.||||.++|+++.+.+......++++++|+++...|+.|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 252 (559)
T PRK08315 173 NFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHC 252 (559)
T ss_pred cHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHH
Confidence 4555443221100 001111223457889999999999999999999999999888888888899999999999999998
Q ss_pred chh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhH
Q 006121 410 MGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488 (660)
Q Consensus 410 ~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~ 488 (660)
.+. +.++.++..|+++++.....++..+++.++++++|+++++|+++..++........++++||.+++||++++.++.
T Consensus 253 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~ 332 (559)
T PRK08315 253 FGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVM 332 (559)
T ss_pred HHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHH
Confidence 887 5688999999999977666789999999999999999999999999887655555678999999999999999999
Q ss_pred HHHHhhCCCCceeccccccccccccccCCcCC--CCcccccCcCCCCceEEEEcCC-CCcCCCCCCceeEEEE-----ec
Q 006121 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-----FP 560 (660)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~vld~~-~~~vp~G~~giGel~v-----~~ 560 (660)
+.+.+.++..+++|.||+||++.+++...... .....++|+|+++++++|+|++ ++++|.|+. |||+| ..
T Consensus 333 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--GEl~v~g~~~~~ 410 (559)
T PRK08315 333 KRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ--GELCTRGYSVMK 410 (559)
T ss_pred HHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCc--eEEEEECchhhh
Confidence 99988887667999999999986544332221 2345789999999999999987 999999997 99999 34
Q ss_pred cccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceee
Q 006121 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCL 640 (660)
Q Consensus 561 ~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a 640 (660)
||++ +++.+...|.. .+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.++|+|.++
T Consensus 411 gy~~------~~~~~~~~~~~------~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~ 478 (559)
T PRK08315 411 GYWN------DPEKTAEAIDA------DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDV 478 (559)
T ss_pred hhcC------ChhHHhhcCCC------CCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEE
Confidence 5655 56666666642 33999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecC-cceeeeec
Q 006121 641 HIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 641 ~vv~~~~~~-~~~l~a~~ 657 (660)
+|+...+.. +..+++|+
T Consensus 479 ~v~~~~~~~~~~~~~~~v 496 (559)
T PRK08315 479 QVVGVPDEKYGEEVCAWI 496 (559)
T ss_pred EEEecCCCCCCeEEEEEE
Confidence 888765543 34566655
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=508.63 Aligned_cols=420 Identities=15% Similarity=0.173 Sum_probs=325.1
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++|+++|+++.+. ...+||+||+++++++|++|.+. +++|++|+|+++|++++++++|||+++|++++|+
T Consensus 23 ~a~~~p~~~a~~~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l 96 (540)
T PRK05857 23 QARQQPEAIALRRCDG------TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96 (540)
T ss_pred HHhhCCCcEEEeecCC------CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 3478999999986443 12799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
++.++.+++.++++.++++++++++........+. ..... ...+.+...... . . +......
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~-------~-~-~~~~~~~----- 157 (540)
T PRK05857 97 DGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP---EALHS--IPVIAVDIAAVT-------R-E-SEHSLDA----- 157 (540)
T ss_pred CccCCHHHHHHHHHhcCCceEEEeccchhcccccc---ccccc--cceeEeeccccc-------c-c-ccccccc-----
Confidence 99999999999999999999999976432111111 00000 011112110000 0 0 0000000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh----HhcCCCCCCEEEEecCccccchhhHHHHhh
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 419 (660)
..........+++++|++|||||||.||||+++|+++.+...... ..+....+++++...|+.|+.+++..+.++
T Consensus 158 -~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l 236 (540)
T PRK05857 158 -ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCL 236 (540)
T ss_pred -cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHh
Confidence 000112234678999999999999999999999999876543321 224566788999999999999998888999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
+.|+++++. ..++..++++|++++||+++++|++++.|++.......+++++|.+++||++++....+++ ..+ +++
T Consensus 237 ~~G~~~v~~--~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~-~~~-g~~ 312 (540)
T PRK05857 237 MHGGLCVTG--GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFI-EAT-GVR 312 (540)
T ss_pred hcceeEEec--CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHH-HHh-CCe
Confidence 999998764 3467899999999999999999999999988765555678999999999999987776544 444 588
Q ss_pred eeccccccccccccccCCcCC----CCcccccCcCCCCceEEEEcCCCCc-C-----CCCCCceeEEEE-ec----cccC
Q 006121 500 IIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVP-Y-----PDDQPCVGEVGL-FP----LYLG 564 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~-v-----p~G~~giGel~v-~~----~y~~ 564 (660)
+++.||+||++.......... ....+++|+|++|++++|+|++++. + |.|+. |||+| ++ ||++
T Consensus 313 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~--Gel~v~g~~~~~GY~~ 390 (540)
T PRK05857 313 TAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASF--GTLWIKSPANMLGYWN 390 (540)
T ss_pred eecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCc--ceEEEeCcchhhhhhC
Confidence 999999999985433222111 1245789999999999999987763 3 44665 99999 33 4554
Q ss_pred CcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEE
Q 006121 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYA 644 (660)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~ 644 (660)
+++.|.+.|.. | ||+|||+|++|+||+++|.||.||+||++|+||+|.|||++|..||+|.+++|+.
T Consensus 391 ------~~~~t~~~~~~-----g--~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~ 457 (540)
T PRK05857 391 ------NPERTAEVLID-----G--WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYE 457 (540)
T ss_pred ------CccchhhhcCC-----C--ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence 66777777741 3 9999999999999999999999999999999999999999999999999998887
Q ss_pred EeecC
Q 006121 645 WLYFH 649 (660)
Q Consensus 645 ~~~~~ 649 (660)
..+..
T Consensus 458 ~~~~~ 462 (540)
T PRK05857 458 IPDEE 462 (540)
T ss_pred cCccc
Confidence 65543
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=505.67 Aligned_cols=435 Identities=17% Similarity=0.164 Sum_probs=346.9
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. ++||+||.++++++|.+|.+. +++|++|+++++|++++++++|||+++|+++++++
T Consensus 33 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 104 (527)
T TIGR02275 33 AARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLAL 104 (527)
T ss_pred HHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccc
Confidence 378999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+.++.+++.++++.++++++++++.... ....+....+....+. ..+.+..... ........+.....
T Consensus 105 ~~~~~~~~~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-- 173 (527)
T TIGR02275 105 FSHRKSELTAYAQQIEPALYIIDRAHSL-FDYDAFARQLQSKLPTLRNIIVAGQTR--------VEAELFLWLESPAE-- 173 (527)
T ss_pred cccCHHHHHHHHHhcCCcEEEEcCcccc-cchHHHHHHHHhhCCcceEEEEecCCC--------CcchhhHHhhCcCc--
Confidence 9999999999999999999999865311 0000111111111221 1112211000 00011111111111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~~ 421 (660)
........++++|+++|||||||.||||+++|+++...+......+.++++|++++.+|++|.+++. .++.++..
T Consensus 174 ---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~ 250 (527)
T TIGR02275 174 ---PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 250 (527)
T ss_pred ---cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence 1112345678999999999999999999999999998888777788899999999999999988874 47889999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+ ..++..+++.|+++++|++..+|+++..|.+.......+++++|.+++||++++.++.+++.+.+ +++++
T Consensus 251 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~ 328 (527)
T TIGR02275 251 GGCVVLAP-DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQ 328 (527)
T ss_pred CCeEEECC-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEE
Confidence 99998865 56788999999999999999999999999876655556788999999999999999999988776 48899
Q ss_pred ccccccccccccccCCcCCCCcccccCcCC-CCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccc
Q 006121 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHE 575 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t 575 (660)
+.||+||++.++...........+++|+|+ ++..++|+|++|+++|.|+. |||++ + .||++ +++.+
T Consensus 329 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~--Gei~v~g~~~~~gY~~------~~~~~ 400 (527)
T TIGR02275 329 QVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGET--GMLLTRGPYTFRGYYK------APEHN 400 (527)
T ss_pred eeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCc--eEEEecCCccchhhcC------ChhHh
Confidence 999999976543222112223346899999 58999999999999999997 99999 3 35554 66677
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~ 654 (660)
.+.|..+. ||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|++++|+...+.. +..++
T Consensus 401 ~~~~~~dg------~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 474 (527)
T TIGR02275 401 AAAFDAEG------FYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSC 474 (527)
T ss_pred HhhcCcCC------CEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEE
Confidence 77775433 999999999999999999999999999999999999999999999999999999876654 45666
Q ss_pred eecc
Q 006121 655 FYFS 658 (660)
Q Consensus 655 a~~~ 658 (660)
+|+.
T Consensus 475 a~vv 478 (527)
T TIGR02275 475 AFIV 478 (527)
T ss_pred EEEE
Confidence 6653
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=539.70 Aligned_cols=431 Identities=14% Similarity=0.086 Sum_probs=325.7
Q ss_pred CcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 184 ~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
.+++++||++|+++.++ .+||+||+++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|
T Consensus 455 ~~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vp 526 (994)
T PRK07868 455 EQARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVL 526 (994)
T ss_pred HHHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 35588999999999777 999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCC--CCCcchhhhhccCC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR--EQDLSWKDFLSSVD 340 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~ 340 (660)
++|. +++.++++++++++||++.... ..+.. ....++++..... ...... .....+++......
T Consensus 527 l~p~---~~l~~il~~s~~~~li~~~~~~---------~~~~~-~~~~iiv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 592 (994)
T PRK07868 527 MPPD---TDLAAAVRLGGVTEIITDPTNL---------EAARQ-LPGRVLVLGGGES-RDLDLPDDADVIDMEKIDPDAV 592 (994)
T ss_pred eCCc---hhHHHHHhccCCeEEEEChHHH---------HHHHh-cCceEEEecCCcc-ccccCCcchhhhhhhhcCcccc
Confidence 9985 6899999999999999986432 11111 1223333321110 000000 00111211111000
Q ss_pred CCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhh
Q 006121 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 420 (660)
. .+.........++++|||+|| ||||+||++.++|.+...........++++++|++++.+|++|+.+++..+.+++
T Consensus 593 ~--~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l 669 (994)
T PRK07868 593 E--LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAV 669 (994)
T ss_pred c--CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHh
Confidence 0 000011112236899999999 5777778887888765544444455678899999999999999999977666666
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|++.++....+++..+++.|++++||+++++|++++.|++.......++++||.++. +.+++++.+++.+.++++++
T Consensus 670 ~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l 747 (994)
T PRK07868 670 VGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG--SGMPTGLWERVVEAFAPAHV 747 (994)
T ss_pred ccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEec--CCCCHHHHHHHHHHhCchhe
Confidence 6666555555678999999999999999999999999998765444456789998763 34999999999998877889
Q ss_pred eccccccccccccccCCcCCCCcccccCcCCCCc-eEEE-----------EcCCC--CcCCCCCCceeEEEE-eccccCC
Q 006121 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVI-----------LDECG--VPYPDDQPCVGEVGL-FPLYLGA 565 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~v-----------ld~~~--~~vp~G~~giGel~v-~~~y~~~ 565 (660)
+|.||+||++.... . . .....+++|+|++|+ +++| +|++| ++++.|++ |||++ +++++
T Consensus 748 ~~~YG~TE~~~~~~-~-~-~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~--Gel~~~~~~~~-- 820 (994)
T PRK07868 748 VEFFATTDGQAVLA-N-V-SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEV--GVLLARARGPI-- 820 (994)
T ss_pred eeeeeccccccccc-c-c-CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCc--eEEEEecCCCC--
Confidence 99999999875322 1 1 224567899999998 5554 35666 67889997 99999 55554
Q ss_pred cccccCccc--ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEE
Q 006121 566 SDRLLNADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIY 643 (660)
Q Consensus 566 ~~~~~~~~~--t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv 643 (660)
+++. +..+|. ++.+||+|||+|++|+||+|+|+||+|||||++|++|+|.|||++|.+||+|++|+|+
T Consensus 821 -----~p~~t~~~~~~~-----~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVv 890 (994)
T PRK07868 821 -----DPTASVKRGVFA-----PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTY 890 (994)
T ss_pred -----ChhhhhHhcccc-----cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEE
Confidence 3332 223342 2567999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcceeeeecc
Q 006121 644 AWLYFHKLELIFYFS 658 (660)
Q Consensus 644 ~~~~~~~~~l~a~~~ 658 (660)
...+..+..+++|+.
T Consensus 891 g~~d~~~~~~~a~Vv 905 (994)
T PRK07868 891 GVEVGGRQLAVAAVT 905 (994)
T ss_pred eecCCCCceEEEEEE
Confidence 877666667888864
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=500.78 Aligned_cols=420 Identities=20% Similarity=0.181 Sum_probs=341.3
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+|+.+|+++|+++.+. .+||+||.++++++|++|++ . +++|++|+++++|++++++++|||+++|++++|
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 11 RAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred HHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 3478999999998777 99999999999999999986 6 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+++.++.+++.+++++++++++++++... +....+...... ..+.+. +++++......
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 141 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQ------NMALSMQKVSYVQRVISIT---------------SLKEIEDRKID 141 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHH------HHHHHhhhccCcceEEEec---------------chHhhhccCCC
Confidence 99999999999999999999999987532 111122111111 111111 12222221111
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~ 420 (660)
......++++++++|||||||.||+|+++|+++..........++++++++++...|+.|..++. .++.++.
T Consensus 142 -------~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~ 214 (496)
T PRK06839 142 -------NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF 214 (496)
T ss_pred -------CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHh
Confidence 11234568999999999999999999999999877666666677889999999999999988874 4678899
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.+ ..++..+++.++++++|++.++|++++.|++.......+++++|.+++||+++++++.+++.+. ++++
T Consensus 215 ~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~ 291 (496)
T PRK06839 215 AGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLF 291 (496)
T ss_pred cCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCee
Confidence 999998865 5789999999999999999999999999998765555678899999999999999999888875 5889
Q ss_pred eccccccccccccccCCc-CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 501 IESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
++.||+||++........ ......+++|+|+++++++|+|++++++|.|+. |||+| + +||++ +++.
T Consensus 292 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~ 363 (496)
T PRK06839 292 GQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEV--GELLIRGPNVMKEYWN------RPDA 363 (496)
T ss_pred EeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCc--eEEEEECCCcchhhcC------ChHH
Confidence 999999999864333222 223456789999999999999999999999996 99999 3 34444 5555
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
++..|. ..||+|||+|++++||+++++||.||+||++|.+|+|.|||++|.++|+|.+++|+...+.. +..+
T Consensus 364 ~~~~~~-------~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 436 (496)
T PRK06839 364 TEETIQ-------DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIP 436 (496)
T ss_pred HHHHHc-------CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceE
Confidence 555442 22999999999999999999999999999999999999999999999999999888765544 3456
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++++.
T Consensus 437 ~~~v~ 441 (496)
T PRK06839 437 IAFIV 441 (496)
T ss_pred EEEEE
Confidence 66653
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=499.45 Aligned_cols=423 Identities=16% Similarity=0.126 Sum_probs=346.0
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. .+||.||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 12 ~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 83 (497)
T PRK06145 12 ARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPIN 83 (497)
T ss_pred HHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 478999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
+.++.+++.+++++++++++++++..... .. .....+.+..... ..+..+......
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~--- 139 (497)
T PRK06145 84 YRLAADEVAYILGDAGAKLLLVDEEFDAI----------VA-LETPKIVIDAAAQ----------ADSRRLAQGGLE--- 139 (497)
T ss_pred cccCHHHHHHHHHhcCCcEEEEccchhhh----------hh-cccceEEecCccc----------chhHHHhccCCC---
Confidence 99999999999999999999998753210 00 0111122211000 001111110000
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCc
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~ 423 (660)
........++++++++|||||||.||||+++|+++..........+++..+++++...|+.|..++ +..+.+++.|+
T Consensus 140 --~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~ 217 (497)
T PRK06145 140 --IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217 (497)
T ss_pred --CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccC
Confidence 011123467899999999999999999999999998777666677889999999999999998777 34577899999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++++.+ ..++..+++.++++++|++.++|+++..|+........+++++|.+++|||+++.++.+++.+.+++.++++.
T Consensus 218 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~ 296 (497)
T PRK06145 218 TLRIHR-EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA 296 (497)
T ss_pred EEEECC-cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEe
Confidence 999976 5688999999999999999999999999987765555677899999999999999999999988877899999
Q ss_pred ccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (660)
||+||++..++..... .....+++|+|+++++++|+|++++++|.|+. |||++ ..||++ +++.+++
T Consensus 297 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~Gy~~------~~~~~~~ 368 (497)
T PRK06145 297 YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMK--GEICMRGPKVTKGYWK------DPEKTAE 368 (497)
T ss_pred ecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCc--eEEEEECcchhhhhcC------ChHHHHH
Confidence 9999998754432221 22345689999999999999999999999986 99999 345555 6677777
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|.. .||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|+...+.. +..++++
T Consensus 369 ~~~~-------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~ 441 (497)
T PRK06145 369 AFYG-------DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAV 441 (497)
T ss_pred HHhC-------CCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEE
Confidence 7742 3999999999999999999999999999999999999999999999999999888766543 4456666
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 442 v~ 443 (497)
T PRK06145 442 VV 443 (497)
T ss_pred EE
Confidence 54
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-57 Score=504.45 Aligned_cols=430 Identities=18% Similarity=0.150 Sum_probs=339.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+.+...+ +.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 38 a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 111 (546)
T PLN02330 38 AELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGAN 111 (546)
T ss_pred hhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCC
Confidence 4789999999874221 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
+.++.+++.+++++++++++++++......+ ......+++.... ......|.+++..... .
T Consensus 112 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~----------~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~--~ 172 (546)
T PLN02330 112 PTALESEIKKQAEAAGAKLIVTNDTNYGKVK----------GLGLPVIVLGEEK-------IEGAVNWKELLEAADR--A 172 (546)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEccchhhhHh----------hcCCcEEEecCCC-------CCCcccHHHHHhhccc--c
Confidence 9999999999999999999999986432111 1112233332111 1123456666544322 1
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCC----CCCEEEEecCccccchhh-HHHHhh
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK----VGDVYCWPTNLGWVMGPV-ILFSSF 419 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~-~~~~~l 419 (660)
..........++++++++|||||||.||||+++|+++...+... .+.+. ..++++...|+.|..++. .++.+|
T Consensus 173 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l 250 (546)
T PLN02330 173 GDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYGITGICCATL 250 (546)
T ss_pred CcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHHHHHHHHHHh
Confidence 11111223456899999999999999999999999998765432 22232 346788889999988874 567889
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCcc--CccEEEeecCCCChhhHHHHHhhCCC
Q 006121 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT--KIRSFASTGETSNVDDDLWLSSKAWY 497 (660)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~--~lr~v~~gGe~l~~~~~~~~~~~~~~ 497 (660)
..|+++++.+ .+++..+++.++++++|++.++|+++..|+........+++ ++|.+++||+++++++.+++.+.+++
T Consensus 251 ~~g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~ 329 (546)
T PLN02330 251 RNKGKVVVMS-RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPG 329 (546)
T ss_pred hcCCEEEEec-ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCC
Confidence 9999999986 57889999999999999999999999999876544444444 47899999999999999999998878
Q ss_pred CceeccccccccccccccCCcCC----CCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCcc
Q 006121 498 NAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGASD 567 (660)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~~ 567 (660)
+++++.||+||++.+........ .....++|+|++|++++|+| ++++++|.|+. |||+| + .||++
T Consensus 330 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~--Gel~v~g~~~~~gy~~--- 404 (546)
T PLN02330 330 VQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP--GELCVRSQCVMQGYYN--- 404 (546)
T ss_pred CeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc--eEEEEecchhhhhhcc---
Confidence 99999999999975433221111 12345899999999999999 67899999996 99999 3 45555
Q ss_pred cccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEee
Q 006121 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLY 647 (660)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~ 647 (660)
+++.+++.|. .++||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.++|+|.+++|+...+
T Consensus 405 ---~~~~~~~~~~------~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 475 (546)
T PLN02330 405 ---NKEETDRTID------EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPD 475 (546)
T ss_pred ---Cccchhhhcc------CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccc
Confidence 5666666654 2349999999999999999999999999999999999999999999999999999887654
Q ss_pred cC-cceeeeec
Q 006121 648 FH-KLELIFYF 657 (660)
Q Consensus 648 ~~-~~~l~a~~ 657 (660)
.. +..+++++
T Consensus 476 ~~~g~~~~a~v 486 (546)
T PLN02330 476 EEAGEIPAACV 486 (546)
T ss_pred cccCceeEEEE
Confidence 33 44566654
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-57 Score=501.94 Aligned_cols=435 Identities=19% Similarity=0.169 Sum_probs=357.2
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++.+|+++|+.+.++ .+||+||+++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 15 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~ 86 (521)
T PRK06187 15 GARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPI 86 (521)
T ss_pred HHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEec
Confidence 4488999999999888 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
++.++.+++..+++.+++++++++.... ..+.++....+. ..+++...... ........+.+++.....
T Consensus 87 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 157 (521)
T PRK06187 87 NIRLKPEEIAYILNDAEDRVVLVDSEFV------PLLAAILPQLPTVRTVIVEGDGPAA---PLAPEVGEYEELLAAASD 157 (521)
T ss_pred ccCCCHHHHHHHHHhcCCeEEEEcchHH------HHHHHHhhccCCccEEEEecCcccc---ccccccccHHHHhhcCCc
Confidence 9999999999999999999999997542 222333333332 22222221110 112234456665543322
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
........++++++++|||||||.||+|.++|+++.+...+....+++.+++++++.+|++|..++...+.++..
T Consensus 158 -----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 232 (521)
T PRK06187 158 -----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMA 232 (521)
T ss_pred -----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHh
Confidence 122234567899999999999999999999999999888888888899999999999999999888777779999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+. .++..+++.|+++++|.++++|++++.|.+.......+++++|.+++|||+++.++.+++.+.+ +++++
T Consensus 233 G~~~v~~~~-~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~ 310 (521)
T PRK06187 233 GAKQVIPRR-FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLV 310 (521)
T ss_pred CCEEEecCC-CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchh
Confidence 999999875 4889999999999999999999999999987765566789999999999999999999998877 68999
Q ss_pred ccccccccccccccCCcCCC-----CcccccCcCCCCceEEEEcCCCCcCCC--CCCceeEEEE-e----ccccCCcccc
Q 006121 502 ESCGGTELSSAYIQGSLLQP-----QAFGAFSTATMTAGLVILDECGVPYPD--DQPCVGEVGL-F----PLYLGASDRL 569 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~-----~~~~~iG~p~~~~~~~vld~~~~~vp~--G~~giGel~v-~----~~y~~~~~~~ 569 (660)
|.||+||++.+......... ....++|+|++++.++|+|++++++|. |+. |||++ + .+|++
T Consensus 311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~v~~~~~~~~y~~----- 383 (521)
T PRK06187 311 QGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV--GEIIVRGPWLMQGYWN----- 383 (521)
T ss_pred eeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCe--eEEEEECcchhhhhcC-----
Confidence 99999999865443322222 256789999999999999999999999 886 99999 2 34443
Q ss_pred cCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC
Q 006121 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH 649 (660)
Q Consensus 570 ~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~ 649 (660)
+++.+.+.|.. + ||+|||+|++++||++++.||.||+||++|.+|+|.+||++|.++++|.+++|+...+..
T Consensus 384 -~~~~~~~~~~~-----~--~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~ 455 (521)
T PRK06187 384 -RPEATAETIDG-----G--WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEK 455 (521)
T ss_pred -CHHHHHHHhhC-----C--ceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCC
Confidence 55556655542 2 999999999999999999999999999999999999999999999999999888765432
Q ss_pred -cceeeeecc
Q 006121 650 -KLELIFYFS 658 (660)
Q Consensus 650 -~~~l~a~~~ 658 (660)
+..+.++++
T Consensus 456 ~~~~~~~~v~ 465 (521)
T PRK06187 456 WGERPVAVVV 465 (521)
T ss_pred cCceEEEEEE
Confidence 445555543
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=503.90 Aligned_cols=447 Identities=17% Similarity=0.175 Sum_probs=350.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+.. +.+||+||.++++++|++|.+. +++|++|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~ 101 (558)
T PRK12583 28 VARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNIN 101 (558)
T ss_pred HHHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecC
Confidence 3789999999885431 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc-------------CCCcEEEEcCCCCCCCCCCCCCCcc
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------------APLKAIVLPAIGNDVGIPLREQDLS 331 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~~~~ 331 (660)
+.++.+++.+++++++++++++++..... +....+...... .+....++...... ......
T Consensus 102 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 175 (558)
T PRK12583 102 PAYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP-----PPGFLA 175 (558)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCCC-----Cccccc
Confidence 99999999999999999999998753211 111111111110 11111111111100 112234
Q ss_pred hhhhhccCCCCCC-CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccc
Q 006121 332 WKDFLSSVDYHPR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVM 410 (660)
Q Consensus 332 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (660)
|+++......... ..........++++++++|||||||.||||.++|+++.+.+......++++++|++++..|+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 255 (558)
T PRK12583 176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255 (558)
T ss_pred hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 4444332211000 001111234578899999999999999999999999988888777778899999999999999998
Q ss_pred hh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHH
Q 006121 411 GP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDL 489 (660)
Q Consensus 411 ~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~ 489 (660)
+. +.++.++..|+++++.....++..+++.|+++++|+++.+|+++..++........+++++|.+++||+++++++.+
T Consensus 256 g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~ 335 (558)
T PRK12583 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMR 335 (558)
T ss_pred hHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHH
Confidence 87 56788899999999876667889999999999999999999999988876554556789999999999999999999
Q ss_pred HHHhhCCCCceeccccccccccccccCCcC--CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccc
Q 006121 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLY 562 (660)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y 562 (660)
++.+.++...+++.||+||++.++...... ......++|+|++++.++|+|+++++++.|+. |||+| + .||
T Consensus 336 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy 413 (558)
T PRK12583 336 RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEI--GELCTRGYSVMKGY 413 (558)
T ss_pred HHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCe--eEEEEEeCccchhh
Confidence 998888767899999999999754433221 12345789999999999999999999999996 99999 3 344
Q ss_pred cCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEE
Q 006121 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHI 642 (660)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~v 642 (660)
++ +++.+...|.. .+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|.++|+|.+++|
T Consensus 414 ~~------~~~~~~~~~~~------~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v 481 (558)
T PRK12583 414 WN------NPEATAESIDE------DGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQV 481 (558)
T ss_pred cC------ChHHHHhhcCC------CCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 44 55566655532 3499999999999999999999999999999999999999999999999999988
Q ss_pred EEEeecC-cceeeeecc
Q 006121 643 YAWLYFH-KLELIFYFS 658 (660)
Q Consensus 643 v~~~~~~-~~~l~a~~~ 658 (660)
+...+.. +..++++++
T Consensus 482 ~~~~~~~~~~~~~~~v~ 498 (558)
T PRK12583 482 FGVPDEKYGEEIVAWVR 498 (558)
T ss_pred EeeecCCCCcEEEEEEE
Confidence 8765543 355666654
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=503.84 Aligned_cols=440 Identities=17% Similarity=0.157 Sum_probs=341.0
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+++++|+++|+.+.+. .+||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|
T Consensus 33 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~ 104 (562)
T PRK12492 33 SCKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVN 104 (562)
T ss_pred HHHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEec
Confidence 3478999999998766 89999999999999999997 5 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcC-------------CC------CCCCC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPA-------------IG------NDVGI 323 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~------~~~~~ 323 (660)
++|.++.+++.+++++++++++++++...+. ...+............. .. .....
T Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
T PRK12492 105 TNPLYTAREMRHQFKDSGARALVYLNMFGKL------VQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPA 178 (562)
T ss_pred cCccCCHHHHHHHHhccCceEEEeccccchH------HHHhhhccCceEEEeechhhccccccchhcccccccccccccc
Confidence 9999999999999999999999997643211 11111100000000000 00 00000
Q ss_pred CCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC---------C
Q 006121 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---------L 394 (660)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---------~ 394 (660)
........|+++...... .........++++++|+|||||||.||||+++|+++...+......+. +
T Consensus 179 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
T PRK12492 179 YHLPQAVPFKQALRQGRG----LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM 254 (562)
T ss_pred cCCcccccHHHHHhccCC----CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccc
Confidence 001122345555433211 111122345689999999999999999999999999777655444332 2
Q ss_pred CC-CCEEEEecCccccchh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccC
Q 006121 395 KV-GDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (660)
Q Consensus 395 ~~-~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (660)
.. +++++...|+.|.++. +.++..+..|+++++.....++..+++.|+++++|++..+|+++..|.+.......++++
T Consensus 255 ~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~ 334 (562)
T PRK12492 255 KEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSA 334 (562)
T ss_pred cCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccc
Confidence 33 3577888999999887 456677889998887765567889999999999999999999999998876555667889
Q ss_pred ccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCc
Q 006121 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (660)
Q Consensus 473 lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~g 552 (660)
+|.+++||+++++++.+++.+.+ ++++++.||+||++.+++..........+++|+|+++++++|+|++++++|.|+.
T Consensus 335 lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~- 412 (562)
T PRK12492 335 LKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGER- 412 (562)
T ss_pred eeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCc-
Confidence 99999999999999998888765 5899999999999875544332233345789999999999999999999999996
Q ss_pred eeEEEE-e----ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHH
Q 006121 553 VGEVGL-F----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPL 627 (660)
Q Consensus 553 iGel~v-~----~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eI 627 (660)
|||+| + .||++ +++.|.+.|.. ++||+|||+|++++||+++|.||.||+||++|++|+|.||
T Consensus 413 -Gel~v~g~~~~~gY~~------~~~~t~~~~~~------~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eI 479 (562)
T PRK12492 413 -GELCIKGPQVMKGYWQ------QPEATAEALDA------EGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEI 479 (562)
T ss_pred -eEEEEeCCcccccccc------CchhhhhcccC------CCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHH
Confidence 99999 3 34554 67778777753 2399999999999999999999999999999999999999
Q ss_pred HHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 628 TFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 628 E~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
|.+|.+||.|.+++|+...+.. +..+++|+
T Consensus 480 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 510 (562)
T PRK12492 480 EDVVMAHPKVANCAAIGVPDERSGEAVKLFV 510 (562)
T ss_pred HHHHHhCCCeeEEEEEeccCCCCCceEEEEE
Confidence 9999999999999888765433 34566554
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=491.94 Aligned_cols=420 Identities=21% Similarity=0.208 Sum_probs=327.0
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++..+|+.+|+.+... +.++.+||+|+.+++.++|++|++. +.+||+|+|++.|+++|+++.+||+.+|++.||+
T Consensus 25 ~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~ 100 (613)
T COG1022 25 RVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100 (613)
T ss_pred HhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEec
Confidence 3477888889987765 6788999999999999999999999 9779999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC---cEEEEcCCCCCCCCCCCCCCcchhhhhccCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (660)
.+..+++.++++|+++++++|+++.... .+....+....+. ....+....... ......++.......
T Consensus 101 y~t~~~~~~~~iL~~se~~~i~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 171 (613)
T COG1022 101 YSTSTPEQLAYILNESESKVIFVENQEL-----LDLVLPVLEDCPKVVDLIVIIDLVREAV----EAKALVLEVFPDEGI 171 (613)
T ss_pred CCCCCHHHHHHHHhcCCceEEEecchHH-----HHHHHhhhccccchhhhhhhhhhhhhcc----chhhccccccccccc
Confidence 9999999999999999999999997421 1122222221111 000000000000 000001111000000
Q ss_pred ----CCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC-CCCCCEEEEecCccccchhh-H
Q 006121 341 ----YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPV-I 414 (660)
Q Consensus 341 ----~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~-~ 414 (660)
..............++|+|.|+|||||||+|||||++|+|++..+......+. ++++|++++++|++|.+... +
T Consensus 172 ~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~ 251 (613)
T COG1022 172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFE 251 (613)
T ss_pred hhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHH
Confidence 00001111224567899999999999999999999999999999999999997 99999999999999998875 3
Q ss_pred HHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhc--------CC----------------------
Q 006121 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NC---------------------- 464 (660)
Q Consensus 415 ~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--------~~---------------------- 464 (660)
....+..|+++.. ..++..+++.+.+.++|++..+|.+|..+.+. ..
T Consensus 252 ~~~~~~~g~~~~~---~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~ 328 (613)
T COG1022 252 GGLALYGGVTVLF---KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALL 328 (613)
T ss_pred HHHHhhcceEEEe---cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhc
Confidence 5555555555555 34678999999999999999999999887542 00
Q ss_pred -------------------CCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCccc
Q 006121 465 -------------------LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG 525 (660)
Q Consensus 465 -------------------~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 525 (660)
..... .++|++++||.++++++..+++.. ++++..+||+|||++.++.. +......+
T Consensus 329 ~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~-~~~~~~~g 404 (613)
T COG1022 329 GGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVN-PPDRFVLG 404 (613)
T ss_pred ccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEc-cccCcccC
Confidence 00111 378999999999999999988876 58999999999999865544 34456678
Q ss_pred ccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCce
Q 006121 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604 (660)
Q Consensus 526 ~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~ 604 (660)
++|+|+|+++++|.|+ |||+| +|..+.+ ||.+|+.|++.|..|. ||+|||+|.+|+||+
T Consensus 405 tvG~p~p~~evKI~d~------------GEilVRG~~Vm~G--Yyk~pe~Taeaf~~DG------Wf~TGDlg~~d~~g~ 464 (613)
T COG1022 405 TVGKPLPGIEVKIADD------------GEILVRGPNVMKG--YYKNPEATAEAFTEDG------WFRTGDLGELDEDGY 464 (613)
T ss_pred CcCCcCCCceEEEccC------------ceEEEecchhcch--hcCChHHHhhhccccC------CcccCceeEEcCCCc
Confidence 9999999999999994 99999 4443332 3349999999999765 999999999999999
Q ss_pred EEEEeccCCccc-cCceeecchHHHHhhcCCCCceeeEEEE
Q 006121 605 IIVQGRADDTMN-LGGIKALLLPLTFLSSPRSSFKCLHIYA 644 (660)
Q Consensus 605 l~~~GR~dd~ik-i~G~rv~~~eIE~~L~~~~~V~~a~vv~ 644 (660)
|.++||+++.|| .+|.+|.|..||+.+.++|-|.+++||+
T Consensus 465 L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg 505 (613)
T COG1022 465 LVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG 505 (613)
T ss_pred EEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe
Confidence 999999999999 5899999999999999999999999887
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=509.46 Aligned_cols=430 Identities=17% Similarity=0.117 Sum_probs=332.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.++ ++||+||.++++++|++|.+. +++|++|+|+++|++++++++|||+++|++++|++
T Consensus 47 a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~ 118 (600)
T PRK08279 47 AARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLN 118 (600)
T ss_pred HHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 378999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+.++.+++.+++++++++++|+++... +....+...... ..+.+...... .....|.++........
T Consensus 119 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 186 (600)
T PRK08279 119 TQQRGAVLAHSLNLVDAKHLIVGEELV------EAFEEARADLARPPRLWVAGGDTL------DDPEGYEDLAAAAAGAP 186 (600)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHhhhhcccceEEEecCccc------cccccHHHHhhhcccCC
Confidence 999999999999999999999987532 112222222111 12222111000 00122333332211100
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhH-HHHhhhcC
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNG 422 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G 422 (660)
...........++++++|+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|..++.. ++.++..|
T Consensus 187 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 266 (600)
T PRK08279 187 TTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAG 266 (600)
T ss_pred ccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcC
Confidence 10111223346789999999999999999999999999999988888899999999999999999999865 45667788
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
+++++.+ .+++..+++.|+++++|++.++|++++.|+...........++|.+ +|+.+++++.+++.+.++...++|
T Consensus 267 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~ 343 (600)
T PRK08279 267 ATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE 343 (600)
T ss_pred cEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeee
Confidence 8887765 5788899999999999999999999999987644333345667754 477899999999998887667999
Q ss_pred cccccccccccccCCcCCCCcccccCcCCC----Cc---------eEEEEcCCC--CcCCCCCCceeEEEE---eccccC
Q 006121 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATM----TA---------GLVILDECG--VPYPDDQPCVGEVGL---FPLYLG 564 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~----~~---------~~~vld~~~--~~vp~G~~giGel~v---~~~y~~ 564 (660)
.||+||++..+... ....+++|++.+ +. ...|.|.++ .+++.|+. ||+++ +++.+.
T Consensus 344 ~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~~~i~~~~~~~ 417 (600)
T PRK08279 344 FYAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEV--GLLIGRITDRGPFD 417 (600)
T ss_pred eecccccceeeccc----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCc--eeEEEEecCccccc
Confidence 99999998643221 123446676555 32 223444433 36788986 99984 333333
Q ss_pred CcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEE
Q 006121 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYA 644 (660)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~ 644 (660)
+|.+++.|++.|..+++.++.+||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|++
T Consensus 418 ---GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~g 494 (600)
T PRK08279 418 ---GYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYG 494 (600)
T ss_pred ---ccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEE
Confidence 33478888888887776667789999999999999999999999999999999999999999999999999999887
Q ss_pred Eee
Q 006121 645 WLY 647 (660)
Q Consensus 645 ~~~ 647 (660)
..+
T Consensus 495 v~~ 497 (600)
T PRK08279 495 VEV 497 (600)
T ss_pred eec
Confidence 653
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=497.76 Aligned_cols=410 Identities=19% Similarity=0.194 Sum_probs=337.3
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++.++||++|+++.++ .+||+||+++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i 82 (483)
T PRK03640 11 RAFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82 (483)
T ss_pred HHHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEec
Confidence 3478999999998877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
++.++.+++.+++++++++++++++..... .... ....++++......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~---------~~~~---------------------~~~~~~~~~~~~~~-- 130 (483)
T PRK03640 83 NTRLSREELLWQLDDAEVKCLITDDDFEAK---------LIPG---------------------ISVKFAELMNGPKE-- 130 (483)
T ss_pred CcCCCHHHHHHHHHhCCCCEEEEcchhhHH---------Hhhh---------------------ccccHHHHhhcccc--
Confidence 999999999999999999999998743210 0000 00113333222111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
.........++++++++|||||||.||||+++|+++...+......++++++|++++..|++|..++..++.+++.|+
T Consensus 131 --~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 208 (483)
T PRK03640 131 --EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGM 208 (483)
T ss_pred --cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCC
Confidence 011122346789999999999999999999999999887777777788999999999999999998887899999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++++.+ ..++..+++.|+++++|++.++|+++..|.+..... ....+||.+++||+++++...++++.. ++++++.
T Consensus 209 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 284 (483)
T PRK03640 209 RVVLVE-KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQS 284 (483)
T ss_pred EEEecC-CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeee
Confidence 999987 568899999999999999999999999998653322 234689999999999999998887764 5889999
Q ss_pred ccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~ 577 (660)
||+||++..+...... .....+++|+|+++++++|+|++ +++|.|++ |||++ + .||++ +++.++.
T Consensus 285 YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~--Gel~v~g~~~~~gy~~------~~~~~~~ 355 (483)
T PRK03640 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEE--GEIVVKGPNVTKGYLN------REDATRE 355 (483)
T ss_pred eccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCc--eEEEEECcchhhhhcC------CHHHHHH
Confidence 9999987543333222 33456789999999999999864 89999997 99999 3 45555 5666666
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|.. .||+|||++++++||+++++||+||+||++|.+|++.|||+++.++|+|.+++|+...+.. +..++++
T Consensus 356 ~~~~-------~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~ 428 (483)
T PRK03640 356 TFQD-------GWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAF 428 (483)
T ss_pred HHhc-------CCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEE
Confidence 6641 2999999999999999999999999999999999999999999999999999887655433 2334443
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=496.97 Aligned_cols=421 Identities=19% Similarity=0.203 Sum_probs=346.8
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+.+.+. ++||+||.++++++|+.|.+. +++|++|+|+++|+.++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 81 (502)
T TIGR01734 10 AETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVD 81 (502)
T ss_pred HHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCC
Confidence 467899999998877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
+.++.+++.++++.+++++++++........ ....+.+. ....+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~------------~~~~~~~~---------------~~~~~~~~~~~--- 131 (502)
T TIGR01734 82 TSIPSERIEMIIEAAGPELVIHTAELSIDAV------------GTQIITLS---------------ALEQAETSGGP--- 131 (502)
T ss_pred CcChHHHHHHHHHhcCCCEEEeccccccccc------------CCceEEch---------------HhhhhhhhcCC---
Confidence 9999999999999999999999875321000 00111110 00111111100
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcE
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (660)
........+++.++++|||||||.||||+++|+++...+.+....+++..+++++...|++|+.++..++.++..|++
T Consensus 132 --~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~ 209 (502)
T TIGR01734 132 --VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGT 209 (502)
T ss_pred --ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCE
Confidence 001123456889999999999999999999999999988888888889999999999999999999889999999999
Q ss_pred EEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
+++.+.. .++..+++.++++++|.+..+|+++..++.........+++++.++++|++++.+..+++.+.++++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 289 (502)
T TIGR01734 210 LHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYN 289 (502)
T ss_pred EEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEe
Confidence 9998753 47889999999999999999999998877654444556789999999999999999999999988889999
Q ss_pred cccccccccccccCCc----CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCcc
Q 006121 503 SCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (660)
.||+||+++.++.... .......++|+|+++++++|+|++++++|.|+. |||++ .+||++ +++
T Consensus 290 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~~ 361 (502)
T TIGR01734 290 TYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEK--GEIVIVGPSVSKGYLN------NPE 361 (502)
T ss_pred CccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCe--eEEEEccccccccccC------Ccc
Confidence 9999999754432211 122234579999999999999999999999986 99999 346655 666
Q ss_pred cccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEe--ecCcc
Q 006121 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWL--YFHKL 651 (660)
Q Consensus 574 ~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~--~~~~~ 651 (660)
.+.+.|... .+.+||+|||+|+++++ +++++||.||+||++|++|+|.|||++|.++|+|++++|+... +....
T Consensus 362 ~~~~~~~~~---~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~ 437 (502)
T TIGR01734 362 KTAEAFFSH---EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVE 437 (502)
T ss_pred cchHhheeC---CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCce
Confidence 676666432 36679999999999977 9999999999999999999999999999999999999988743 33445
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
.+++|+.
T Consensus 438 ~~~~~v~ 444 (502)
T TIGR01734 438 YLIAAIV 444 (502)
T ss_pred EEEEEEE
Confidence 6777653
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=496.14 Aligned_cols=424 Identities=18% Similarity=0.158 Sum_probs=343.0
Q ss_pred CCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCC
Q 006121 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (660)
Q Consensus 188 ~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~ 266 (660)
.+|+++|+.+.+. +.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 14 ~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~ 86 (504)
T PRK07514 14 ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86 (504)
T ss_pred hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCC
Confidence 7899999988444 2899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCC
Q 006121 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (660)
Q Consensus 267 ~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (660)
++.+++..++++++++++++++.... ....+....... .+.+.... ...+.+......
T Consensus 87 ~~~~~~~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~----- 145 (504)
T PRK07514 87 YTLAELDYFIGDAEPALVVCDPANFA------WLSKIAAAAGAPHVETLDADG----------TGSLLEAAAAAP----- 145 (504)
T ss_pred CCHHHHHHHHHhCCCcEEEEccchhH------HHHHhhhccCCceEEEecCCC----------cccHHHhhhhcC-----
Confidence 99999999999999999999875321 112221111111 22221110 111222211111
Q ss_pred CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcE
Q 006121 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (660)
Q Consensus 346 ~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (660)
.........+++++||+|||||||+||||+++|+++.+.+......++++++|++++..|+.|..++ +.++.+++.|++
T Consensus 146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 225 (504)
T PRK07514 146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS 225 (504)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence 1122234567899999999999999999999999999888877778889999999999999998876 467889999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+++.+ ..++..+++.+. ++|++..+|+++..++.........++++|.+++||+++++++.+++.+.++ .++++.|
T Consensus 226 ~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~Y 301 (504)
T PRK07514 226 MIFLP-KFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILERY 301 (504)
T ss_pred EEECC-CCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC-Ccceeec
Confidence 99986 467888999984 7999999999999998776555567889999999999999999999888764 7899999
Q ss_pred cccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCcccccCccccccc
Q 006121 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~ 578 (660)
|+||++...... ........++|.|+++++++|+| ++++++|.|+. |||+| + .||++ +++.+++.
T Consensus 302 G~tE~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~--Gel~i~~~~~~~gy~~------~~~~~~~~ 372 (504)
T PRK07514 302 GMTETNMNTSNP-YDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEI--GMIEVKGPNVFKGYWR------MPEKTAEE 372 (504)
T ss_pred ccccccccccCC-ccccccCcccccCCCCcEEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------Cchhhhhh
Confidence 999998643322 22233456899999999999999 89999999996 99999 3 45554 66777888
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
|..++ ||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++++|.+++|+...+.. +..+++++
T Consensus 373 ~~~~~------~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~ 446 (504)
T PRK07514 373 FRADG------FFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVV 446 (504)
T ss_pred cccCC------CeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEE
Confidence 86433 999999999999999999999999999999999999999999999999999888655433 34566665
Q ss_pred c
Q 006121 658 S 658 (660)
Q Consensus 658 ~ 658 (660)
.
T Consensus 447 ~ 447 (504)
T PRK07514 447 V 447 (504)
T ss_pred E
Confidence 4
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=504.50 Aligned_cols=445 Identities=19% Similarity=0.193 Sum_probs=344.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+.+.+. .+||+||.++++++|+.|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 42 ~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 113 (573)
T PRK05605 42 VARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHN 113 (573)
T ss_pred HHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 478999999999776 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCC--------------------CC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDV--------------------GI 323 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--------------------~~ 323 (660)
|.++.+++.+++++++++++|+++.... ....+....... ++.+....... ..
T Consensus 114 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (573)
T PRK05605 114 PLYTAHELEHPFEDHGARVAIVWDKVAP------TVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALT 187 (573)
T ss_pred cCCCHHHHHHHHhccCCcEEEechhhHH------HHHhhhhccccceeEeeecccccccccccccccccccccccccccc
Confidence 9999999999999999999999765321 111111111111 11111000000 00
Q ss_pred CCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC-C-CCCCEEE
Q 006121 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-L-KVGDVYC 401 (660)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~-~~~~~~l 401 (660)
....+...|.++....... ...........++++++++|||||||.||||+++|+++...+......+. + ..+++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 266 (573)
T PRK05605 188 GPAPGTVPWETLVDAAIGG-DGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVL 266 (573)
T ss_pred cCCCcceeHHHHhhccccc-cccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEE
Confidence 0012334566554432210 00001122356789999999999999999999999999877665443332 2 3478999
Q ss_pred EecCccccchh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeec
Q 006121 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (660)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG 480 (660)
+..|+.|..++ ..++.++..|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++||
T Consensus 267 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg 345 (573)
T PRK05605 267 AALPMFHAYGLTLCLTLAVSIGGELVLLP-APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGA 345 (573)
T ss_pred EecChHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECC
Confidence 99999988876 45677899999999986 46889999999999999999999999999987655566789999999999
Q ss_pred CCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCC--CCcCCCCCCceeEEEE
Q 006121 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC--GVPYPDDQPCVGEVGL 558 (660)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~--~~~vp~G~~giGel~v 558 (660)
+++++++.+++.+.+ ++++++.||+||+++++...........+++|+|+++++++|+|++ ++++|.|.. |||++
T Consensus 346 ~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~--Gel~v 422 (573)
T PRK05605 346 MALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEE--GELLV 422 (573)
T ss_pred CcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCe--eEEEE
Confidence 999999988887765 4789999999999875544333333445789999999999999966 589999986 99999
Q ss_pred -eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCc
Q 006121 559 -FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSF 637 (660)
Q Consensus 559 -~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V 637 (660)
++....+ ++.+++.+++.|.. | ||+|||+|+++++|+++++||.||+||++|++|+|.|||++|.+|+.|
T Consensus 423 ~~~~~~~g--y~~~~~~~~~~~~~-----g--~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i 493 (573)
T PRK05605 423 RGPQVFKG--YWNRPEETAKSFLD-----G--WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGV 493 (573)
T ss_pred ecCchhhh--hcCChhHhhhcccC-----C--CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCccc
Confidence 3322211 12256677766642 3 999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEeecC-cceeeeecc
Q 006121 638 KCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 638 ~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.+++|+...+.. +..++++++
T Consensus 494 ~~~~v~~~~~~~~~~~~~~~vv 515 (573)
T PRK05605 494 EDAAVVGLPREDGSEEVVAAVV 515 (573)
T ss_pred ceEEEEeeecccCCeEEEEEEE
Confidence 999988765433 356666653
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-57 Score=501.51 Aligned_cols=428 Identities=19% Similarity=0.180 Sum_probs=340.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+.+.+. ++||+||.++++++|+.|++. +++|++|+|+++|++++++++|||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 88 (528)
T PRK07470 17 ARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTN 88 (528)
T ss_pred HHHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecC
Confidence 368999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+.++.+++.+++++++++++++++...+ ....+...... ..+.+.. . ....+++++......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~- 152 (528)
T PRK07470 89 FRQTPDEVAYLAEASGARAMICHADFPE------HAAAVRAASPDLTHVVAIGG--A-------RAGLDYEALVARHLG- 152 (528)
T ss_pred ccCCHHHHHHHHHhcCceEEEEcchhHH------HHHHHHhhCCcCceEEEeCC--C-------cccccHHHHHhcCCC-
Confidence 9999999999999999999999975421 11112111111 1222211 0 012345555443211
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhc--CCCCCCEEEEecCccccchhhHHHHhhh
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 420 (660)
.........++++++++|||||||.||||+++|+++...+......+ +.+++|+++...|++|+.++..+ ..++
T Consensus 153 ---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~-~~~~ 228 (528)
T PRK07470 153 ---ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQL-CQVA 228 (528)
T ss_pred ---CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHH-HHHh
Confidence 11122345678999999999999999999999999876544332222 56788999999999999888655 4678
Q ss_pred cCcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 421 NGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 421 ~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
.|++.++.+. ..++..+++.|+++++|++.++|++++.|.+.......+++++|.+++||+++++...+++.+.++ .+
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~ 307 (528)
T PRK07470 229 RGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLG-KV 307 (528)
T ss_pred cCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhC-cH
Confidence 8888887763 457889999999999999999999999998876555567889999999999999999888877764 78
Q ss_pred eeccccccccccccccCCcC-------CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcc
Q 006121 500 IIESCGGTELSSAYIQGSLL-------QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~ 567 (660)
++|.||+||+++.+...... .....+++|+|++|++++|+|+++++++.|+. |||++ ..||++
T Consensus 308 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~~~~~gy~~--- 382 (528)
T PRK07470 308 LVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGET--GEICVIGPAVFAGYYN--- 382 (528)
T ss_pred HHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCc--eEEEEeCCccchhhcC---
Confidence 99999999998654432211 12234689999999999999999999999996 99999 345554
Q ss_pred cccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEee
Q 006121 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLY 647 (660)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~ 647 (660)
+++.++..|. ..||+|||+|++++||+++++||.||+||++|+||+|.|||++|.++|+|.+++|+...+
T Consensus 383 ---~~~~~~~~~~-------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~ 452 (528)
T PRK07470 383 ---NPEANAKAFR-------DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPD 452 (528)
T ss_pred ---CHHHHHhhhc-------CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccC
Confidence 5666666664 239999999999999999999999999999999999999999999999999998887655
Q ss_pred cC-cceeeeec
Q 006121 648 FH-KLELIFYF 657 (660)
Q Consensus 648 ~~-~~~l~a~~ 657 (660)
.. +...++++
T Consensus 453 ~~~~~~~~~~~ 463 (528)
T PRK07470 453 PVWGEVGVAVC 463 (528)
T ss_pred cccCceeEEEE
Confidence 43 33444443
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-57 Score=520.59 Aligned_cols=435 Identities=18% Similarity=0.192 Sum_probs=327.4
Q ss_pred cCCCCCC-cEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd-~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+ ++|+.+.+. +.+||+||.++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 213 ~~~~~p~~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl 285 (718)
T PRK08043 213 AQYRYGAGKPCIEDVNF-------TPDSYRKLLKKTLFVGRILEKYSVEGERIGLMLPNATISAAVIFGASLRRRIPAMM 285 (718)
T ss_pred HHHHhCCCCcceEcCCC-------CcccHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCcHHHHHHHHHHHHcCCccccc
Confidence 3478897 688875331 28999999999999999997768999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhh--h-ccC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDF--L-SSV 339 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~--~-~~~ 339 (660)
++.++.+++++++++++++++++++...+..+... +....+. ..+++..... ...+.+. . ...
T Consensus 286 ~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~ 352 (718)
T PRK08043 286 NYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LPEQLTQVRWVYLEDLKD---------DVTTADKLWIFAHL 352 (718)
T ss_pred ccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hhhhhccccEEEhhhhhh---------hcchhHHHHHHHHH
Confidence 99999999999999999999999876432111100 0001111 1121111000 0011110 0 000
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHh
Q 006121 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 418 (660)
.. + ........++++||++|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|..++ ..++.+
T Consensus 353 ~~---~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~ 428 (718)
T PRK08043 353 LM---P-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTP 428 (718)
T ss_pred hC---C-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHH
Confidence 00 0 001123467899999999999999999999999999888877777889999999999999999887 468899
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCC
Q 006121 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (660)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (660)
+..|+++++.+...++..+.+.++++++|++..+|+++..+.+.. ...++++||.+++||+++++++.+.+.+.+ ++
T Consensus 429 l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~ 505 (718)
T PRK08043 429 LLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GL 505 (718)
T ss_pred HHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CC
Confidence 999999999875556678889999999999999999998887642 345678999999999999999999888776 48
Q ss_pred ceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcc
Q 006121 499 AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNAD 573 (660)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~ 573 (660)
+++|.||+||++..++.... .....+++|+|++|++++|+|+++. |+. |||++ + .||++.. +++
T Consensus 506 ~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~~----~~~--Gel~v~g~~v~~GY~~~e----~~~ 574 (718)
T PRK08043 506 RILEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPGI----EQG--GRLQLKGPNIMNGYLRVE----KPG 574 (718)
T ss_pred CeecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCCC----CCc--eEEEEecCCccccccCCC----Ccc
Confidence 89999999999865443322 2345679999999999999997653 454 99998 3 3444310 222
Q ss_pred cccccccccc-cCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cc
Q 006121 574 HEEVYFRGMP-MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KL 651 (660)
Q Consensus 574 ~t~~~f~~~p-~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~ 651 (660)
.+...+.... .....+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+|+.+.+++|+...+.. +.
T Consensus 575 ~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge 654 (718)
T PRK08043 575 VLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGE 654 (718)
T ss_pred cccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCc
Confidence 2211111000 011235999999999999999999999999999999999999999999999988777776654433 44
Q ss_pred eeeeec
Q 006121 652 ELIFYF 657 (660)
Q Consensus 652 ~l~a~~ 657 (660)
.++++.
T Consensus 655 ~~v~~~ 660 (718)
T PRK08043 655 ALVLFT 660 (718)
T ss_pred eEEEEE
Confidence 555554
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=499.54 Aligned_cols=432 Identities=16% Similarity=0.159 Sum_probs=340.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl 101 (542)
T PRK06155 30 QAERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPI 101 (542)
T ss_pred HHHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEe
Confidence 3478999999998877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccC-C-CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+|.++.+++..+++++++++++++..... ......... . ...+.+..... .. ....|.........
T Consensus 102 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~ 169 (542)
T PRK06155 102 NTALRGPQLEHILRNSGARLLVVEAALLA------ALEAADPGDLPLPAVWLLDAPAS---VS---VPAGWSTAPLPPLD 169 (542)
T ss_pred ccccCHHHHHHHHHhcCceEEEEChhhHH------HHHHhcccccCcceEEEecCccc---cc---cccccchhhhcccC
Confidence 99999999999999999999999875421 111111111 1 12222221110 00 00111110000000
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
.........++++++|+|||||||.||||+++|+++.+........+++++++++++..|++|..++..++.+++.
T Consensus 170 ----~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~ 245 (542)
T PRK06155 170 ----APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLA 245 (542)
T ss_pred ----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHc
Confidence 0111223467899999999999999999999999998877777778899999999999999999999888999999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.........+++|.++.|| +++.+.+++.+.+ +++++
T Consensus 246 G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~ 321 (542)
T PRK06155 246 GATYVLEP-RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLL 321 (542)
T ss_pred CceEEeeC-CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEE
Confidence 99999876 46789999999999999999999999999877655555677899887666 5678888887776 47899
Q ss_pred ccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-ec---cccCCcccccCcccccc
Q 006121 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FP---LYLGASDRLLNADHEEV 577 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~---~y~~~~~~~~~~~~t~~ 577 (660)
|.||+||++.++.... .....+++|+|+++++++|+|++++++|.|+. |||++ ++ +...+ |+.+++.|.+
T Consensus 322 ~~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gei~v~~~~~~~~~~G--Y~~~~~~~~~ 395 (542)
T PRK06155 322 DGYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPDGEP--GELLLRADEPFAFATG--YFGMPEKTVE 395 (542)
T ss_pred eeecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEEecCCccccchh--hcCCHHHHHH
Confidence 9999999987544321 23456789999999999999999999999996 99999 32 11111 1225556666
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|. ..||+|||+|++++||+++|+||.||+||++|.+|+|.|||++|.+||+|++++|+...+.. +..+.++
T Consensus 396 ~~~-------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~ 468 (542)
T PRK06155 396 AWR-------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAA 468 (542)
T ss_pred hhc-------CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEE
Confidence 663 23999999999999999999999999999999999999999999999999999988765433 3455554
Q ss_pred c
Q 006121 657 F 657 (660)
Q Consensus 657 ~ 657 (660)
+
T Consensus 469 v 469 (542)
T PRK06155 469 V 469 (542)
T ss_pred E
Confidence 4
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=499.56 Aligned_cols=435 Identities=18% Similarity=0.137 Sum_probs=351.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+.+.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~ 92 (523)
T PRK08316 21 ARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVN 92 (523)
T ss_pred HHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 478899999999887 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
+.++.+++..+++.+++++++++..... .+....+......+....... ..........++++......
T Consensus 93 ~~~~~~~i~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--- 161 (523)
T PRK08316 93 FMLTGEELAYILDHSGARAFLVDPALAP------TAEAALALLPVDTLILSLVLG--GREAPGGWLDFADWAEAGSV--- 161 (523)
T ss_pred cccCHHHHHHHHHhCCCCEEEEccchHH------HHHHHhhhcCccceeeeeccc--ccccccchhhHHHHHhcCCC---
Confidence 9999999999999999999999875321 111111111111111111110 00111223444444432221
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhhcCc
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 423 (660)
........++++++++|||||||+||+|.++|+++++........+++.++++++...|+.|..++. .++.++..|+
T Consensus 162 --~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 162 --AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred --ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 1122345678999999999999999999999999998887777788899999999999999988874 3556788999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+.++.++.+.+++.++++++++.
T Consensus 240 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
T PRK08316 240 TNVILD-APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC 318 (523)
T ss_pred eEEEec-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence 999986 4678999999999999999999999999998766556678899999999999999999999988877899999
Q ss_pred ccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~ 577 (660)
||+||++.+....... .....+++|+|+++++++|+|+++++++.|+. |||++ + .+|++ +++.++.
T Consensus 319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gei~v~~~~~~~~y~~------~~~~~~~ 390 (523)
T PRK08316 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV--GEIVHRSPQLMLGYWD------DPEKTAE 390 (523)
T ss_pred ecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCc--ceEEEECCchhhhhcC------CHHHHHH
Confidence 9999998754433222 22345789999999999999999999999996 99999 3 34443 6666766
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|. .+||+|||+|++++||+++++||.||+||++|.+|+|.|||+.|.++|+|.+++|+...+.. +.++.++
T Consensus 391 ~~~-------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~ 463 (523)
T PRK08316 391 AFR-------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAV 463 (523)
T ss_pred Hhh-------CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEE
Confidence 663 23999999999999999999999999999999999999999999999999999887655443 3455555
Q ss_pred c
Q 006121 657 F 657 (660)
Q Consensus 657 ~ 657 (660)
+
T Consensus 464 v 464 (523)
T PRK08316 464 V 464 (523)
T ss_pred E
Confidence 4
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=511.80 Aligned_cols=423 Identities=16% Similarity=0.108 Sum_probs=323.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. .+.++++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 49 a~~~p~~~a~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~ 125 (614)
T PRK08180 49 AQEAPDRVFLAERGA---DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVS 125 (614)
T ss_pred HHHCCCCceeeeccC---CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeec
Confidence 478999999987532 12345899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC-----HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccC
Q 006121 265 DSFA-----AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (660)
Q Consensus 265 p~~p-----~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (660)
|.++ .+++.+++++++++++|+++.... ...+.... ......++.... . ......+|+++....
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~-~~~~~~i~~~~~-~-----~~~~~~~~~~~~~~~ 194 (614)
T PRK08180 126 PAYSLVSQDFGKLRHVLELLTPGLVFADDGAAF----ARALAAVV-PADVEVVAVRGA-V-----PGRAATPFAALLATP 194 (614)
T ss_pred cccccccCCHHHHHHHHhcCCCcEEEEcCHHHH----HHHHhhhc-cCCceEEEecCC-C-----CCcccccHHHHhccc
Confidence 9998 799999999999999999753100 00000000 011112222110 0 001124566655432
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCC--CCCEEEEecCccccchh-hHHH
Q 006121 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK--VGDVYCWPTNLGWVMGP-VILF 416 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~-~~~~ 416 (660)
.. ...........++++++|+|||||||+||||+++|+++...+......+++. .++++++++|++|..+. +.++
T Consensus 195 ~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~ 272 (614)
T PRK08180 195 PT--AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLG 272 (614)
T ss_pred cc--cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHH
Confidence 11 0001111234678999999999999999999999999988877766666653 56899999999999887 5678
Q ss_pred HhhhcCcEEEEecCCCCh---hhHHHHHHHcCCeEEeecHHHHHHHHhcCC----CCCCCccCccEEEeecCCCChhhHH
Q 006121 417 SSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDDDL 489 (660)
Q Consensus 417 ~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~lr~v~~gGe~l~~~~~~ 489 (660)
.+|++|+++++.++.+++ ..+++.|+++++|+++++|+++..|++... .....+++||.+++||+++++++.+
T Consensus 273 ~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~ 352 (614)
T PRK08180 273 IVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWD 352 (614)
T ss_pred HHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHH
Confidence 899999999997644443 467888999999999999999999876421 1234578999999999999999988
Q ss_pred HHHhh----CC-CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----
Q 006121 490 WLSSK----AW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F---- 559 (660)
Q Consensus 490 ~~~~~----~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~---- 559 (660)
++.+. ++ ++++++.||+||++..++.... .....+++|+|++|++++|+|++ . .|||+| +
T Consensus 353 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~-------~--~GEi~vrg~~v~ 422 (614)
T PRK08180 353 RLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVG-------G--KLEVRVKGPNVT 422 (614)
T ss_pred HHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccCccCCcEEEEecCC-------C--CcEEEEecCccc
Confidence 88764 22 3679999999999864443222 23456799999999999999853 2 299999 3
Q ss_pred ccccCCcccccCcccccccccccccCCCceeEeeCceEEE----ecCceEEEEeccCCcccc-Cceeec--chHHHHhhc
Q 006121 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR----TVGGYIIVQGRADDTMNL-GGIKAL--LLPLTFLSS 632 (660)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~----~~dG~l~~~GR~dd~iki-~G~rv~--~~eIE~~L~ 632 (660)
.||++ +++.|++.|..+ +||+|||+|++ |+||+|+|+||+||+||+ +|++|+ +.|||.++.
T Consensus 423 ~GY~~------~p~~t~~~~~~d------gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~ 490 (614)
T PRK08180 423 PGYWR------APELTAEAFDEE------GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSA 490 (614)
T ss_pred hhhcC------ChhHhHhhcccC------CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhh
Confidence 35555 677888888543 39999999999 578999999999999985 698776 789999999
Q ss_pred CCCCceeeEEEEEe
Q 006121 633 PRSSFKCLHIYAWL 646 (660)
Q Consensus 633 ~~~~V~~a~vv~~~ 646 (660)
+||.|++|+|+...
T Consensus 491 ~~p~V~~a~V~g~~ 504 (614)
T PRK08180 491 GAPLVQDVVITGHD 504 (614)
T ss_pred cCchhheEEEEcCC
Confidence 99999999888654
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=497.30 Aligned_cols=430 Identities=16% Similarity=0.169 Sum_probs=344.1
Q ss_pred CCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCC
Q 006121 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (660)
Q Consensus 190 pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p 268 (660)
|+++|+++.+. .+||+||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++++++..+
T Consensus 37 p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~ 108 (536)
T PRK10946 37 SDAIAVICGER--------QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108 (536)
T ss_pred CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCcccc
Confidence 99999999877 899999999999999999999 999999999999999999999999999998888778888
Q ss_pred HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCC
Q 006121 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (660)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (660)
..++..++++++++++++++.... ...-.....+....+.. .+++... .+...+.++...... .
T Consensus 109 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 173 (536)
T PRK10946 109 RSELNAYASQIEPALLIADRQHAL-FSDDDFLNTLVAEHSSLRVVLLLND---------DGEHSLDDAINHPAE-----D 173 (536)
T ss_pred HHHHHHHHhhcCCCEEEEeccccc-cchHHHHHHHHhhCCCceEEEEecC---------CCCccHHHHhhCccc-----c
Confidence 889999999999999999864210 00001112222222222 2222111 112234444433221 1
Q ss_pred CCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhhcCcEE
Q 006121 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATL 425 (660)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~~G~~l 425 (660)
.......++++++++|||||||.||||+++|+++...+......+++++++++++..|++|.+++. .++.++..|+++
T Consensus 174 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~ 253 (536)
T PRK10946 174 FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTV 253 (536)
T ss_pred cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEE
Confidence 112344678999999999999999999999999999888888888999999999999999987763 578899999999
Q ss_pred EEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhc--CCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++.+ ..++..++++++++++|++.++|+++..|++. .......++++|.+++||+++++.+.+++.+.+ ++++++.
T Consensus 254 ~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~ 331 (536)
T PRK10946 254 VLAP-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQV 331 (536)
T ss_pred EECC-CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEe
Confidence 9875 56788899999999999999999999999865 222334578999999999999999999888766 5899999
Q ss_pred ccccccccccccCCcCCCCcccccCcCC-CCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~ 577 (660)
||+||+++.+............++|+|+ +++.++|+|+++++++.|+. |||++ + .||++ +++.|++
T Consensus 332 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~GY~~------~~~~t~~ 403 (536)
T PRK10946 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 403 (536)
T ss_pred ecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCc--cEEEEecCccchhhcC------Ccccchh
Confidence 9999976543322222223456899999 79999999999999999997 99999 3 45555 6778888
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
+|..++ ||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+++|+...+.. +..+++|
T Consensus 404 ~~~~d~------~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~ 477 (536)
T PRK10946 404 AFDANG------FYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAF 477 (536)
T ss_pred hcccCC------ceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEE
Confidence 886543 999999999999999999999999999999999999999999999999999888776543 4556666
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 478 vv 479 (536)
T PRK10946 478 LV 479 (536)
T ss_pred EE
Confidence 53
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=498.96 Aligned_cols=440 Identities=18% Similarity=0.159 Sum_probs=338.3
Q ss_pred hhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHH
Q 006121 176 AECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAII 254 (660)
Q Consensus 176 ~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~l 254 (660)
...++... ++++|+++|+++.+. .+.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+
T Consensus 18 l~~~l~~~--a~~~p~~~ai~~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 89 (534)
T PRK05852 18 IADLVEVA--ATRLPEAPALVVTAD------RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAAS 89 (534)
T ss_pred HHHHHHHH--HHhCCCCcEEEecCC------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 33444443 378999999987543 13799999999999999999999 9999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCc--ch
Q 006121 255 LAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDL--SW 332 (660)
Q Consensus 255 kaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~ 332 (660)
++|++++|++|.++.+++.+++++++++++|++........ ....... ...+.+..... . ..+.. .+
T Consensus 90 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~-~----~~~~~~~~~ 158 (534)
T PRK05852 90 RADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA-----EPTTRWW-PLTVNVGGDSG-P----SGGTLSVHL 158 (534)
T ss_pred HcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc-----ccccccc-ceeeeeccccc-c----ccccccccc
Confidence 99999999999999999999999999999999864221000 0000000 01111111000 0 00000 01
Q ss_pred hhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh
Q 006121 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (660)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 412 (660)
..... . ..........++++++++|||||||.||||+++|+++.+.+......+++.++|++++..|+.|..++
T Consensus 159 ~~~~~---~---~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 232 (534)
T PRK05852 159 DAATE---P---TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGL 232 (534)
T ss_pred ccccC---C---CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHH
Confidence 10000 0 00001111224678999999999999999999999999888888788889999999999999999888
Q ss_pred h-HHHHhhhcCcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCC--CCCccCccEEEeecCCCChhhH
Q 006121 413 V-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDD 488 (660)
Q Consensus 413 ~-~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~gGe~l~~~~~ 488 (660)
. .++.+++.|+++++.+. .+++..+++.|+++++|+++++|+++..|.+..... ..+++++|.++++|+++++++.
T Consensus 233 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~ 312 (534)
T PRK05852 233 IAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETA 312 (534)
T ss_pred HHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHH
Confidence 4 57888999999888653 457889999999999999999999999998754321 2356899999999999999999
Q ss_pred HHHHhhCCCCceeccccccccccccccCCcC----CC---CcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e-
Q 006121 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QP---QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F- 559 (660)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~---~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~- 559 (660)
+++.+.++ +++++.||+||++..++..... .. ...+..|+ .+|++++|+|++|+++|+|+. |||+| +
T Consensus 313 ~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~~--Gel~v~g~ 388 (534)
T PRK05852 313 QALQTEFA-APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGLPLPAGAV--GEVWLRGT 388 (534)
T ss_pred HHHHHHhC-CChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCCCCCCCCc--eEEEEecC
Confidence 99888774 7899999999998654432211 11 12233444 799999999999999999996 99999 3
Q ss_pred ---ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCC
Q 006121 560 ---PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSS 636 (660)
Q Consensus 560 ---~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~ 636 (660)
.||++ +++.|++.|. + .||+|||+|++|+||++++.||.||+||++|.+|+|.|||++|.++|+
T Consensus 389 ~v~~gY~~------~~~~t~~~~~-~------g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~ 455 (534)
T PRK05852 389 TVVRGYLG------DPTITAANFT-D------GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPN 455 (534)
T ss_pred cccchhcC------Ccccchhhhc-C------CCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCC
Confidence 45555 6777777774 2 299999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEEeecC-cceeeeec
Q 006121 637 FKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 637 V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
|++|+|+...+.. +..+++++
T Consensus 456 V~~~~v~g~~~~~~g~~~~~~v 477 (534)
T PRK05852 456 VMEAAVFGVPDQLYGEAVAAVI 477 (534)
T ss_pred eeeEEEEecCCcCcCceEEEEE
Confidence 9999888766544 34455554
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=491.68 Aligned_cols=413 Identities=18% Similarity=0.198 Sum_probs=332.6
Q ss_pred cCCCCCCcEEEEE--ecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 006121 185 HRRKEDNTVAIVW--REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (660)
Q Consensus 185 ~a~~~pd~~Av~~--~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (660)
+++.+||++|+.+ .+. .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++
T Consensus 4 ~a~~~p~~~a~~~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 75 (488)
T PRK09088 4 HARLQPQRLAAVDLALGR--------RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYV 75 (488)
T ss_pred hhhhCCCceEEEecCCCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 3478899999986 344 899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
|+++..+.+++.+++++++++++++++....... ....++++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~ 123 (488)
T PRK09088 76 PLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT--------------------------------DVEDLAAFIASADA 123 (488)
T ss_pred eeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc--------------------------------cccchhhhhhhccc
Confidence 9999999999999999999999999864321000 00112222111110
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~ 420 (660)
. .........++++++++|||||||+||+|+++|+++.+.+........+..++++++..|+.|..++. .++.++.
T Consensus 124 --~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~ 200 (488)
T PRK09088 124 --L-EPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLA 200 (488)
T ss_pred --c-ccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHh
Confidence 0 00111233568899999999999999999999999988777776667788999999999999998875 4667888
Q ss_pred cCcEEEEecCCCChhhHHHHHH--HcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCC
Q 006121 421 NGATLALYQGSPLERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~--~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (660)
.|+++++.+ ..++..++..+. ++++|+++.+|++++.|.+........++++|.+++||++++....+.+.+. ++
T Consensus 201 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~ 277 (488)
T PRK09088 201 VGGSILVSN-GFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GI 277 (488)
T ss_pred cCCEEEEcC-CCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CC
Confidence 999998876 467778888876 4899999999999999987654445567899999999999998887777654 57
Q ss_pred ceeccccccccccccccCCc--CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccC
Q 006121 499 AIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLN 571 (660)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~ 571 (660)
++++.||+||++..+..... ......+++|+|+++++++|+|++++++|.|++ |||+| + .||++ +
T Consensus 278 ~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gY~~------~ 349 (488)
T PRK09088 278 PMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYWR------R 349 (488)
T ss_pred ceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCc--eEEEEECCccchhhcC------C
Confidence 89999999999864332211 112345789999999999999999999999997 99999 3 34554 5
Q ss_pred cccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-c
Q 006121 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-K 650 (660)
Q Consensus 572 ~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~ 650 (660)
++.+++.|..+ +||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.++|+|.+++|+...+.. +
T Consensus 350 ~~~~~~~~~~~------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g 423 (488)
T PRK09088 350 PQATARAFTGD------GWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWG 423 (488)
T ss_pred hhhhhhhhcCC------CCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCC
Confidence 66677666533 4999999999999999999999999999999999999999999999999999888765432 3
Q ss_pred ceeeeec
Q 006121 651 LELIFYF 657 (660)
Q Consensus 651 ~~l~a~~ 657 (660)
...++++
T Consensus 424 ~~~~~~v 430 (488)
T PRK09088 424 EVGYLAI 430 (488)
T ss_pred ceeEEEE
Confidence 3344443
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=500.14 Aligned_cols=430 Identities=20% Similarity=0.179 Sum_probs=347.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+.+.+. .+||.||.++++++|++|.+. +++|++|+|+++|++++++++|||+++|++++|++
T Consensus 27 a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~ 98 (542)
T PRK07786 27 ALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVN 98 (542)
T ss_pred HHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcC
Confidence 367899999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+..+.+++.++++++++++++++.... +.........+. ..+++.. . ...+..++++++.....
T Consensus 99 ~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~- 164 (542)
T PRK07786 99 FRLTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGG-S------SDDSVLGYEDLLAEAGP- 164 (542)
T ss_pred ccCCHHHHHHHHHhCCCcEEEEccchH------HHHHHhhhccCccceEEEecC-C------CcccccCHHHHhhccCC-
Confidence 999999999999999999999987532 111111111111 1222211 0 01123456665543222
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCC-CCCCEEEEecCccccchhhHHHHhhhc
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL-KVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
.........+++++++|||||||.||||+++|+++.+.+......+++ ..++++++..|+.|..++..++.++..
T Consensus 165 ----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~ 240 (542)
T PRK07786 165 ----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLL 240 (542)
T ss_pred ----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHc
Confidence 111223456789999999999999999999999998888777777776 678899999999999888889999999
Q ss_pred CcEEEEec-CCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 422 GATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 422 G~~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
|+++++.+ ...++..+++.|+++++|.++++|+++..|.......... .++|.+++||+++++++.+++.+.+++.++
T Consensus 241 G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l 319 (542)
T PRK07786 241 GAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQI 319 (542)
T ss_pred cCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeE
Confidence 99999975 3458899999999999999999999999998765433322 379999999999999999999998888899
Q ss_pred eccccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 501 IESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
++.||+||++...+..... ......++|+|++++.++|+|++++++|.|+. |||++ + .||++ +++.
T Consensus 320 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~~~ 391 (542)
T PRK07786 320 LAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEV--GEIVYRAPTLMSGYWN------NPEA 391 (542)
T ss_pred EeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCc--eEEEEEChhhhhhhcC------CHHH
Confidence 9999999998643322221 12345689999999999999999999999986 99999 3 45554 6667
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
++..|.. .||+|||++++++||+++++||.||+||++|.+|++.|||++|.+||+|.+++|+...... +..+
T Consensus 392 ~~~~f~~-------~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~ 464 (542)
T PRK07786 392 TAEAFAG-------GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVP 464 (542)
T ss_pred HHHHhhC-------CcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceE
Confidence 7776641 3999999999999999999999999999999999999999999999999999888654433 3344
Q ss_pred eeec
Q 006121 654 IFYF 657 (660)
Q Consensus 654 ~a~~ 657 (660)
++++
T Consensus 465 ~~~v 468 (542)
T PRK07786 465 VAVA 468 (542)
T ss_pred EEEE
Confidence 4443
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=495.03 Aligned_cols=442 Identities=16% Similarity=0.149 Sum_probs=343.1
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. .++++.+||.||.++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~---~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~ 93 (517)
T PRK08008 17 ADVYGHKTALIFESS---GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPIN 93 (517)
T ss_pred HHHCCCceEEEcccC---CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcC
Confidence 478999999998653 13345899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccC---CCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
|.++.+++.+++++++++++++++... +.+.++.... ....++.... . .......+++++......
T Consensus 94 ~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~ 162 (517)
T PRK08008 94 ARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVA-L----PADDGVSSFTQLKAQQPA 162 (517)
T ss_pred cccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccccCcEEEEecCC-C----cccccccCHHHHhccCCc
Confidence 999999999999999999999987532 2222222211 1122222111 1 011123344444332211
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~ 420 (660)
.........++++++++|||||||.||||+++|+++............+.+++++++..|+.|..+. ..++.++.
T Consensus 163 ----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 238 (517)
T PRK08008 163 ----TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFS 238 (517)
T ss_pred ----cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHh
Confidence 0111223456899999999999999999999999997654333333457889999999999887554 56788999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.+ ..++..+++.|+++++|++.++|++++.++..........++++.+++++ .++.+...++.+.+ ++++
T Consensus 239 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~ 315 (517)
T PRK08008 239 AGATFVLLE-KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRL 315 (517)
T ss_pred cCcEEEEcc-ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHh-CCeE
Confidence 999999987 56889999999999999999999999998876543333456788887764 67888887777765 4899
Q ss_pred eccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe----ccccCCcccccCccccc
Q 006121 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF----PLYLGASDRLLNADHEE 576 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~----~~y~~~~~~~~~~~~t~ 576 (660)
+|.||+||++..++...........++|+|+++++++|+|+++++++.|+. |||++. ++...+ |+.+++.|+
T Consensus 316 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~~~g--y~~~~~~~~ 391 (517)
T PRK08008 316 LTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI--GEICIKGVPGKTIFKE--YYLDPKATA 391 (517)
T ss_pred EeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc--ceEEEeCCCCcchhhh--HhCChHHHh
Confidence 999999999865544433344455789999999999999999999999996 999993 222211 222677788
Q ss_pred ccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeee
Q 006121 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIF 655 (660)
Q Consensus 577 ~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a 655 (660)
+.|..++ ||+|||+|++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+++|+...+.. +..+.+
T Consensus 392 ~~~~~~g------~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~ 465 (517)
T PRK08008 392 KVLEADG------WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKA 465 (517)
T ss_pred hcccCCC------CeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEE
Confidence 8886543 999999999999999999999999999999999999999999999999999988765543 334555
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
++.
T Consensus 466 ~v~ 468 (517)
T PRK08008 466 FVV 468 (517)
T ss_pred EEE
Confidence 543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=496.49 Aligned_cols=437 Identities=17% Similarity=0.174 Sum_probs=337.2
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
.++|+++++.+... +..+.+||.||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 21 ~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 96 (539)
T PRK07008 21 RHAGDTEIVSRRVE----GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINP 96 (539)
T ss_pred hhCCCceEEEeecc----CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccc
Confidence 67788888875321 1235899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc--EEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
.++.+++.++++++++++++++..+. +....+....+.. .+.+..... .... .....+++++......
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~-- 166 (539)
T PRK07008 97 RLFPEQIAYIVNHAEDRYVLFDLTFL------PLVDALAPQCPNVKGWVAMTDAAH-LPAG-STPLLCYETLVGAQDG-- 166 (539)
T ss_pred ccCHHHHHHHHhccCCcEEEEcchhH------HHHHHHHhhCCCceEEEEEccCCc-cccC-CcccccHHHHhcccCC--
Confidence 99999999999999999999987542 1222222222221 122221111 0000 1224556665543221
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHH--HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT--AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
........++++++++|||||||.||||+++|++++... .+....++++++|++++..|++|..+...++.++..
T Consensus 167 ---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~ 243 (539)
T PRK07008 167 ---DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLT 243 (539)
T ss_pred ---CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhc
Confidence 111223467889999999999999999999999986432 233346778899999999999887776556788999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+...++..+++.+++++||++..+|+++..|++.......++++||.+++||+++++++.+++.+.+ +++++
T Consensus 244 G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~ 322 (539)
T PRK07008 244 GAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVI 322 (539)
T ss_pred CceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCcee
Confidence 99999987667889999999999999999999999999887655556789999999999999999999998776 48899
Q ss_pred ccccccccccccccCCcC------CC----CcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe-----ccccCCc
Q 006121 502 ESCGGTELSSAYIQGSLL------QP----QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGAS 566 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~------~~----~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~-----~~y~~~~ 566 (660)
+.||+||++...+..... .. ....++|+|+++++++|+|++++++|.+...+|||++. .||++
T Consensus 323 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~-- 400 (539)
T PRK07008 323 HAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFR-- 400 (539)
T ss_pred cccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcC--
Confidence 999999998643322111 00 11357999999999999999999998643114999993 34444
Q ss_pred ccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEe
Q 006121 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWL 646 (660)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~ 646 (660)
+++ .|+.. +||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||.|.+++|+...
T Consensus 401 ----~~~--------~~~~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~ 466 (539)
T PRK07008 401 ----GDA--------SPLVD--GWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACA 466 (539)
T ss_pred ----Chh--------hhhcC--CCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecC
Confidence 221 12222 3999999999999999999999999999999999999999999999999999988765
Q ss_pred ecC-cceeeeec
Q 006121 647 YFH-KLELIFYF 657 (660)
Q Consensus 647 ~~~-~~~l~a~~ 657 (660)
+.. +..+++++
T Consensus 467 ~~~~~~~~~~~v 478 (539)
T PRK07008 467 HPKWDERPLLVV 478 (539)
T ss_pred CchhccceEEEE
Confidence 433 33444443
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=492.89 Aligned_cols=428 Identities=17% Similarity=0.127 Sum_probs=329.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++|+++|+++.+.. .++||+||.++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 6 ~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 6 HAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 35789999999875321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
++.++++++.+++++++++++++++.... ......... ...+.+. .. ......+++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~-~~~~~~~--~~------~~~~~~~~~~~~~~~~-- 142 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALDG------LAAKVGADL-PLRLSFG--GE------IDGFGSFEAALAGAGP-- 142 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhhh------HHHHhhhcc-ceEEEec--Cc------ccccccHHHHhcccCC--
Confidence 99999999999999999999999764310 011110000 0111111 00 0011223332221100
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEe--cchhhHHH----HHHhhHhcCCCCCCEEEEecCccccchhhHHHH
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW--TQLSSIRC----TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~--sh~~l~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 417 (660)
......++++|+|||||||.||||++ +|+++... .......+.+..+++++..+|++|+.++...+.
T Consensus 143 -------~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~ 215 (501)
T PRK13390 143 -------RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM 215 (501)
T ss_pred -------CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHH
Confidence 01122357999999999999999995 56665432 112234567889999999999999988755556
Q ss_pred hhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhC
Q 006121 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (660)
Q Consensus 418 ~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 495 (660)
.+..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+... ....+++++|.+++||+++++++.+.+.+.+
T Consensus 216 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~ 294 (501)
T PRK13390 216 VHALGGTVVLAK-RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL 294 (501)
T ss_pred HHhcCceEEEcC-CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc
Confidence 678899998876 4678999999999999999999999999886432 2345678999999999999999988888765
Q ss_pred CCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCccccc
Q 006121 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLL 570 (660)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~ 570 (660)
+ .++++.||+||++.++...........+++|+|+++ .++|+|++++++|.|++ |||+| + .||++
T Consensus 295 ~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------ 364 (501)
T PRK13390 295 G-PIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRI--GTVYFERDRLPFRYLN------ 364 (501)
T ss_pred C-CceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCCccccccC------
Confidence 4 789999999999864433222222345789999999 79999999999999997 99999 3 34444
Q ss_pred CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 571 ~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
+++.|++.|.+. +..||+|||+|++|+||+++|.||.|++||++|+||+|.|||++|.+||+|++++|+...+..
T Consensus 365 ~~~~t~~~~~~~----~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~ 440 (501)
T PRK13390 365 DPEKTAAAQHPA----HPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEM 440 (501)
T ss_pred ChhhhHHhhccC----CCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCccc
Confidence 677777776531 224999999999999999999999999999999999999999999999999999988876544
Q ss_pred cceeeeec
Q 006121 650 KLELIFYF 657 (660)
Q Consensus 650 ~~~l~a~~ 657 (660)
++.+++++
T Consensus 441 ~e~~~~~v 448 (501)
T PRK13390 441 GEQVKAVI 448 (501)
T ss_pred CceeEEEE
Confidence 34555554
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=497.44 Aligned_cols=436 Identities=20% Similarity=0.208 Sum_probs=344.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.++ +.+||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 33 ~~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 105 (547)
T PRK06087 33 ARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLL 105 (547)
T ss_pred HHHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccc
Confidence 368999999997652 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
|.++.+++.+++++++++++++++..... ...+....+....+. ..+.+..... .....++.++......
T Consensus 106 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~- 177 (547)
T PRK06087 106 PSWREAELVWVLNKCQAKMFFAPTLFKQT-RPVDLILPLQNQLPQLQQIVGVDKLAP------ATSSLSLSQIIADYEP- 177 (547)
T ss_pred hhcCHHHHHHHHHhcCCeEEEEecccccc-cHHHHHHHHHhhCCCCcEEEEeCCcCC------CcCccCHHHHhccCCc-
Confidence 99999999999999999999998643211 111112222222222 2222221110 0112345554433221
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhc
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLN 421 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~ 421 (660)
........++++++|+|||||||.||||+++|+++..........+++++++++++..|+.|..++ ..++.+++.
T Consensus 178 ----~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 253 (547)
T PRK06087 178 ----LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLI 253 (547)
T ss_pred ----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhc
Confidence 011223467899999999999999999999999998877777777889999999999999999887 467889999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+ ..++..+++.|+++++|+++.+|+.+..+++.......+++++|.+++||+++++++.+.+... +++++
T Consensus 254 g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~ 330 (547)
T PRK06087 254 GARSVLLD-IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLL 330 (547)
T ss_pred CCEEEecC-CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEE
Confidence 99999986 5688999999999999999988777777766544455678899999999999999998877654 68999
Q ss_pred ccccccccccccccCCcCC-CCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCcccc
Q 006121 502 ESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t 575 (660)
+.||+||++.......... .....++|+|++++.++|+|++++++|.|+. |||++ ..||++ +++.+
T Consensus 331 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~~~~ 402 (547)
T PRK06087 331 SVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCE--GEEASRGPNVFMGYLD------EPELT 402 (547)
T ss_pred EEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCc--ceEEEecccccccccC------CHHHH
Confidence 9999999986543322111 1234578999999999999999999999996 99999 334554 56667
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~ 654 (660)
...|..+ .||+|||+|++++||+++++||.||+||++|.+|+|.+||++|.++|+|++++|+...+.. +..+.
T Consensus 403 ~~~~~~~------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 476 (547)
T PRK06087 403 ARALDEE------GWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSC 476 (547)
T ss_pred HHHhCCC------CCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEE
Confidence 6666532 3999999999999999999999999999999999999999999999999999888765433 34555
Q ss_pred eec
Q 006121 655 FYF 657 (660)
Q Consensus 655 a~~ 657 (660)
+++
T Consensus 477 ~~v 479 (547)
T PRK06087 477 AYV 479 (547)
T ss_pred EEE
Confidence 554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=545.76 Aligned_cols=447 Identities=17% Similarity=0.180 Sum_probs=348.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+++++|+++|+++..+ +++||+||+++++++|++|.+.+++||+|+++++|++++++++|||+++|++++|++
T Consensus 624 ~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 696 (1146)
T PRK08633 624 TAKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKRELKDEENVGILLPPSVAGALANLALLLAGKVPVNLN 696 (1146)
T ss_pred HHHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeC
Confidence 3578999999987432 289999999999999999975599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.++.+++.+++++++++++++++...+........... ......+.+...... . .....+.+....... +.
T Consensus 697 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~-~~ 768 (1146)
T PRK08633 697 YTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLEL--PENVKVIYLEDLKAK----I-SKVDKLTALLAARLL-PA 768 (1146)
T ss_pred CCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhc--ccCceEEEeehhccc----c-chhHHHHHHHHhccC-CH
Confidence 999999999999999999999987543211100000000 001112222110000 0 000112221111100 00
Q ss_pred C--CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhhc
Q 006121 345 P--NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLN 421 (660)
Q Consensus 345 ~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~ 421 (660)
. .........++++++++|||||||+||||+++|+++.+.+.+....++++++|++++..|+.|..++. .++.+++.
T Consensus 769 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~ 848 (1146)
T PRK08633 769 RLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLE 848 (1146)
T ss_pred HHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHC
Confidence 0 00001234679999999999999999999999999999888888888899999999999999999885 47899999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+...++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++|||++++++.+++++.+ +++++
T Consensus 849 g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~ 927 (1146)
T PRK08633 849 GIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRIL 927 (1146)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCee
Confidence 99999987667889999999999999999999999999886555566789999999999999999999998877 48899
Q ss_pred ccccccccccccccCCcC---------CCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCc
Q 006121 502 ESCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGAS 566 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~ 566 (660)
|.||+||++...+..... .....+++|+|++|++++|+| ++++++|+|++ |||++ + .||++
T Consensus 928 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~gY~~-- 1003 (1146)
T PRK08633 928 EGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGED--GLILIGGPQVMKGYLG-- 1003 (1146)
T ss_pred cccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCc--eEEEEcCCCccccccC--
Confidence 999999998654432211 112457899999999999999 57899999997 99999 3 45555
Q ss_pred ccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCC--ceeeEEEE
Q 006121 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSS--FKCLHIYA 644 (660)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~--V~~a~vv~ 644 (660)
+++.|++.|... ++++||+|||+|++|+||+++++||.||+||++|+||+|.|||++|.+||+ +.+++|+.
T Consensus 1004 ----~~~~t~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~ 1076 (1146)
T PRK08633 1004 ----DPEKTAEVIKDI---DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTA 1076 (1146)
T ss_pred ----CccchHHHhhcC---CCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEe
Confidence 677788877643 356799999999999999999999999999999999999999999999994 55677766
Q ss_pred EeecC-cceeeeecc
Q 006121 645 WLYFH-KLELIFYFS 658 (660)
Q Consensus 645 ~~~~~-~~~l~a~~~ 658 (660)
..+.. ++.+++++.
T Consensus 1077 ~~~~~~g~~~~~~v~ 1091 (1146)
T PRK08633 1077 VPDEKKGEKLVVLHT 1091 (1146)
T ss_pred ccCCCCCcEEEEEEe
Confidence 55443 445666553
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=499.41 Aligned_cols=437 Identities=17% Similarity=0.168 Sum_probs=328.8
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. ++||+||+++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++||+
T Consensus 24 ~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~ 95 (579)
T PLN03102 24 SECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPIN 95 (579)
T ss_pred HHhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecc
Confidence 367999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccC-------CCcEEEEcCCCCCCCCCCCCCCcchhhhhc
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (660)
|.++.+++.++++.+++++||+++... +....+.... ....+.+....... .......+|.++..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 167 (579)
T PLN03102 96 TRLDATSIAAILRHAKPKILFVDRSFE------PLAREVLHLLSSEDSNLNLPVIFIHEIDFPK--RPSSEELDYECLIQ 167 (579)
T ss_pred ccCCHHHHHHHHhccCCeEEEEChhhH------HHHHHHHhhccccccccCceEEEeccccccc--CCcccccCHHHHHh
Confidence 999999999999999999999987542 1112221111 11233332111100 00012345555554
Q ss_pred cCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHH
Q 006121 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (660)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 417 (660)
.................++++++|+|||||||.||||+++|+++..........+.+...+++++..|+.|..++...+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 247 (579)
T PLN03102 168 RGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWG 247 (579)
T ss_pred ccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHH
Confidence 32220000000011235689999999999999999999999997544433334455677789999999999988877788
Q ss_pred hhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCC
Q 006121 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (660)
Q Consensus 418 ~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~ 497 (660)
++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++.. + +
T Consensus 248 ~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g 324 (579)
T PLN03102 248 TAARGGTSVCMR-HVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-G 324 (579)
T ss_pred HHHhcCcEEeec-cCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-C
Confidence 899999999886 457788999999999999999999999998764433334567889999999999998888764 4 5
Q ss_pred CceeccccccccccccccCCcC------C-------CCcccccCcCCCCceEEEEc-CCCCcCCCC--CCceeEEEE---
Q 006121 498 NAIIESCGGTELSSAYIQGSLL------Q-------PQAFGAFSTATMTAGLVILD-ECGVPYPDD--QPCVGEVGL--- 558 (660)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~------~-------~~~~~~iG~p~~~~~~~vld-~~~~~vp~G--~~giGel~v--- 558 (660)
+++++.||+||+++.++..... . ....+..+.|++ .+.|.| +.++++|.+ + .|||+|
T Consensus 325 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~--~GEl~v~g~ 400 (579)
T PLN03102 325 FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKT--MGEIVIKGS 400 (579)
T ss_pred CeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCC--ceEEEEECc
Confidence 7899999999998543321110 0 011222334444 455667 457788753 4 499999
Q ss_pred --eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCC
Q 006121 559 --FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSS 636 (660)
Q Consensus 559 --~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~ 636 (660)
..||++ +++.|++.|.. | ||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||.
T Consensus 401 ~~~~GY~~------~~~~t~~~f~~-----g--w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~ 467 (579)
T PLN03102 401 SIMKGYLK------NPKATSEAFKH-----G--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPK 467 (579)
T ss_pred chhhhhcC------ChhhhHhhhcc-----C--ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCC
Confidence 345555 66777777742 2 99999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEEeecC-cceeeeecc
Q 006121 637 FKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 637 V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
|.+++|+...+.. +..+++++.
T Consensus 468 V~~a~vv~~~~~~~~~~~~a~v~ 490 (579)
T PLN03102 468 VLETAVVAMPHPTWGETPCAFVV 490 (579)
T ss_pred cceeEEEeccCccccceeEEEEE
Confidence 9999998876543 456666653
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-56 Score=499.49 Aligned_cols=445 Identities=15% Similarity=0.144 Sum_probs=345.0
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
..+|+++|+++.+. .++.+||+||.++++++|++|++ . +++||+|+++++|++++++++|||+++|++++|++
T Consensus 21 ~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~ 95 (576)
T PRK05620 21 TVHGDTTVTTWGGA-----EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLN 95 (576)
T ss_pred HhCCCceEEEEcCC-----ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecc
Confidence 78999999987542 24589999999999999999997 7 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-c-EEEEcCCCCC---CCCCCCCCCcchhhhhccC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-K-AIVLPAIGND---VGIPLREQDLSWKDFLSSV 339 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~ 339 (660)
|.++.+++.+++++++++++|+++... ..+.......+. . ++++...... ..........+|+++....
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (576)
T PRK05620 96 KQLMNDQIVHIINHAEDEVIVADPRLA------EQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR 169 (576)
T ss_pred cccCHHHHHHHHhccCCcEEEEChhhH------HHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcC
Confidence 999999999999999999999987532 112222222222 1 2222211100 0000111234577776532
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh--hHhcCCCCCCEEEEecCccccchhhHHHH
Q 006121 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 417 (660)
.. ........++++++++|||||||+||||+++|+++....... ...+++..++++++.+|++|+.++..++.
T Consensus 170 ~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 244 (576)
T PRK05620 170 ST-----VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLA 244 (576)
T ss_pred CC-----cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHH
Confidence 21 112234567899999999999999999999999986544322 23567889999999999999999888889
Q ss_pred hhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCC
Q 006121 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (660)
Q Consensus 418 ~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~ 497 (660)
++..|+++++.+...++..+++.|+++++|++..+|+++..|+........+..+||.+++||+++++.+.+++.+.+ +
T Consensus 245 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~ 323 (576)
T PRK05620 245 AFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-G 323 (576)
T ss_pred HHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh-C
Confidence 999999999987667889999999999999999999999988765333333456899999999999999998888776 4
Q ss_pred CceeccccccccccccccCCcCC---C----CcccccCcCCCCceEEEEcCCCCcCC--CCCCceeEEEE-----ecccc
Q 006121 498 NAIIESCGGTELSSAYIQGSLLQ---P----QAFGAFSTATMTAGLVILDECGVPYP--DDQPCVGEVGL-----FPLYL 563 (660)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~---~----~~~~~iG~p~~~~~~~vld~~~~~vp--~G~~giGel~v-----~~~y~ 563 (660)
+++++.||+||++...+...... . ....++|++.++++++|+|+ +++++ .|.. |||++ ..||+
T Consensus 324 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~~--Gel~v~g~~~~~gY~ 400 (576)
T PRK05620 324 VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNE--GEIQVRGNWVTASYY 400 (576)
T ss_pred CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCCc--eEEEEEcCccccccc
Confidence 78999999999986544332211 0 12347899999999999998 77775 3554 99999 34555
Q ss_pred CCcccccCcccc----cccccccccC------CCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 564 GASDRLLNADHE----EVYFRGMPMY------KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 564 ~~~~~~~~~~~t----~~~f~~~p~~------~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
+ +++.+ +.+|..+++. ..++||+|||+|++++||+++|+||.||+||++|++|++.|||++|.+
T Consensus 401 ~------~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~ 474 (576)
T PRK05620 401 H------SPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMA 474 (576)
T ss_pred C------CccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhc
Confidence 5 55555 6677655531 134599999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecC-cceeeeec
Q 006121 634 RSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
||+|.+++|+...+.. +..+++++
T Consensus 475 ~p~v~~~~vv~~~~~~~g~~~~a~v 499 (576)
T PRK05620 475 APEVVECAVIGYPDDKWGERPLAVT 499 (576)
T ss_pred CCCceEEEEEeccCCCcCceeEEEE
Confidence 9999999988766544 34555544
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-56 Score=496.56 Aligned_cols=439 Identities=19% Similarity=0.183 Sum_probs=340.2
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.++ .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~ 104 (557)
T PRK07059 33 FRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104 (557)
T ss_pred HHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccC
Confidence 478999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcC-CCCCC-----------------CCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPA-IGNDV-----------------GIPLR 326 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-----------------~~~~~ 326 (660)
|.++.+++.+++++++++++++++.+. +....+........+.+.. ..... .....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (557)
T PRK07059 105 PLYTPRELEHQLKDSGAEAIVVLENFA------TTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSL 178 (557)
T ss_pred cccCHHHHHHHHHccCceEEEEchhhH------HHHHHhhcccCCceeEEecccccccccccccccccccccccccccCC
Confidence 999999999999999999999987532 1112211111111111111 00000 00001
Q ss_pred CCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh----cCCC---CCCE
Q 006121 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLK---VGDV 399 (660)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~----~~~~---~~~~ 399 (660)
++...+++.+..... .........++++|+|+|||||||.||||+++|++++.++...... +... ....
T Consensus 179 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 179 PGHVRFNDALAEGAR----QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred CCcccHHHHhhccCC----CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 123344444432221 1112234567899999999999999999999999987655432221 1111 2346
Q ss_pred EEEecCccccchh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEe
Q 006121 400 YCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (660)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 478 (660)
+++..|+.|..+. ...+.++..|++.++.+...++..+++.|+++++|.+..+|+++..|.........+++++|.++.
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 334 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG 334 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence 7788899888775 456788889999888875557889999999999999999999999998876555567889999999
Q ss_pred ecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE
Q 006121 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (660)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v 558 (660)
||+++++.+.+++.+.+ ++++++.||+||++.+++...........++|+|++|++++|+|++++++|.|+. |||++
T Consensus 335 gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~--Gel~v 411 (557)
T PRK07059 335 GGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEP--GEICI 411 (557)
T ss_pred ccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999988888765 4889999999999875443332222345789999999999999999999999996 99999
Q ss_pred -e----ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 559 -F----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 559 -~----~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
+ .||++ +++.+.+.|..+ .||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+
T Consensus 412 ~g~~~~~gY~~------~~~~~~~~~~~~------g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~ 479 (557)
T PRK07059 412 RGPQVMAGYWN------RPDETAKVMTAD------GFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVAS 479 (557)
T ss_pred eCCccchhhhc------CHHHHhhhcccC------CceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHh
Confidence 3 34554 666777666533 299999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecC-cceeeeec
Q 006121 634 RSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
+|+|.+++|+...+.. +..+++++
T Consensus 480 ~~~V~~~~v~~~~~~~~ge~~~~~v 504 (557)
T PRK07059 480 HPGVLEVAAVGVPDEHSGEAVKLFV 504 (557)
T ss_pred CCceeEEEEEecccCCCCeeEEEEE
Confidence 9999999888755433 44555554
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-56 Score=486.62 Aligned_cols=403 Identities=18% Similarity=0.139 Sum_probs=331.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
.++.++++|+++.++ ++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|++|
T Consensus 10 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 10 AAAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred hcccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 367789999999887 9999999999999999986 5799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (660)
..+.+++.++++++++++++++.... . ...+...+.. ....|.
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~--~----------~~~~~~~~~~-------------~~~~~~------------ 120 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDD--P----------AGLPHVPVRL-------------HARSWH------------ 120 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCcc--c----------ccccceeeec-------------cccccc------------
Confidence 99999999999999999999976310 0 0000000000 000010
Q ss_pred CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcE
Q 006121 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (660)
Q Consensus 346 ~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (660)
......+++++|++|||||||.||||+++|+++...+......+++.+++++++..|+.|..++ ..++.++..|++
T Consensus 121 ---~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 197 (471)
T PRK07787 121 ---RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNR 197 (471)
T ss_pred ---cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCE
Confidence 0112356899999999999999999999999999888877778889999999999999998887 468899999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+++.+ ..++..+++.|+ +++|++..+|+++..|.+.... ...++++|.+++||+++++.+.+++.+.+ +.+++|.|
T Consensus 198 ~~~~~-~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 273 (471)
T PRK07787 198 FVHTG-RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERY 273 (471)
T ss_pred EEecC-CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeeccc
Confidence 99876 568899999999 9999999999999999875322 23578999999999999999999888766 47899999
Q ss_pred cccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCC-CCCCceeEEEE-e----ccccCCcccccCccccccc
Q 006121 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGL-F----PLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp-~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~ 578 (660)
|+||++...+.. ......+.++|+|+++++++|+|+++++++ .|+. +|||++ + .||++ +++.|++.
T Consensus 274 G~tE~~~~~~~~-~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~-~Gei~v~g~~~~~gy~~------~~~~t~~~ 345 (471)
T PRK07787 274 GMTETLITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGET-VGELQVRGPTLFDGYLN------RPDATAAA 345 (471)
T ss_pred CccccCcceecC-CCCcccCCcccccCCCcEEEEECCCCCCCCCCCCC-ceEEEEECcccchhhcC------Chhhchhc
Confidence 999998643322 222334568999999999999999999998 4542 499999 3 34444 67778888
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEecc-CCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~-dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
|..++ ||+|||+|++++||+++++||+ |++||++|+||+|.|||++|.++|.|++++|+...+.. +..+++|
T Consensus 346 ~~~~~------~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~ 419 (471)
T PRK07787 346 FTADG------WFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAY 419 (471)
T ss_pred ccCCC------ceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEE
Confidence 86443 9999999999999999999996 89999999999999999999999999999888765443 4567777
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 420 v~ 421 (471)
T PRK07787 420 VV 421 (471)
T ss_pred EE
Confidence 54
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=493.57 Aligned_cols=442 Identities=17% Similarity=0.143 Sum_probs=339.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|++..+. ++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~ 91 (540)
T PRK06164 20 ARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVN 91 (540)
T ss_pred HHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecC
Confidence 478999999997666 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc-CC--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-AP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+..+.+++.++++++++++++++++.... .....+...... .+ ...+++......... .....+.+.......
T Consensus 92 ~~~~~~~l~~~i~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 167 (540)
T PRK06164 92 TRYRSHEVAHILGRGRARWLVVWPGFKGI-DFAAILAAVPPDALPPLRAIAVVDDAADATPA---PAPGARVQLFALPDP 167 (540)
T ss_pred CCCCcHHHHHHHHhcCccEEEEccccccc-cHHHHhhcccccccCCcceEEEeccCcccCCC---CCccccccccccccc
Confidence 99999999999999999999998764210 000001111110 01 112222211100000 000111111111000
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
............++++++++|||||||+||||+++|+++.+.+.+....+++++++++++..|++|.+++..++.++..
T Consensus 168 -~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 246 (540)
T PRK06164 168 -APPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAG 246 (540)
T ss_pred -CCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhc
Confidence 0000001123356889999999999999999999999999988888888899999999999999999999889999999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeec-CCCChhhHHHHHhhCCCCce
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG-ETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG-e~l~~~~~~~~~~~~~~~~l 500 (660)
|+++++.+ .+++..+++.|+++++|+++++|+++..|.+.. ....+++++|.+.++| .....++.+++... ++++
T Consensus 247 G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~ 322 (540)
T PRK06164 247 GAPLVCEP-VFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR--GVPL 322 (540)
T ss_pred CceEEecC-CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--CCce
Confidence 99999876 568889999999999999999999999998762 3345688999887776 44445556666544 5889
Q ss_pred eccccccccccccccCCcCC--CCcccccCcCC-CCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCcccccC
Q 006121 501 IESCGGTELSSAYIQGSLLQ--PQAFGAFSTAT-MTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLN 571 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~-~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~ 571 (660)
++.||+||++..++...... .....+.|.|+ +++.++|+| +++++++.|+. |||+| + .||++ +
T Consensus 323 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~gY~~------~ 394 (540)
T PRK06164 323 TGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES--GEIEIRAPSLMRGYLD------N 394 (540)
T ss_pred ecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe--eEEEEecccccccccC------C
Confidence 99999999987544433221 12234678886 899999999 57899999996 99999 3 34544 7
Q ss_pred cccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcc
Q 006121 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKL 651 (660)
Q Consensus 572 ~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~ 651 (660)
++.|++.|..+. ||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|+........
T Consensus 395 ~~~t~~~~~~~~------~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~ 468 (540)
T PRK06164 395 PDATARALTDDG------YFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468 (540)
T ss_pred chhhhhcccCCC------ceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCCCce
Confidence 778888886433 99999999999999999999999999999999999999999999999999988876544445
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
.+++++.
T Consensus 469 ~~~~~vv 475 (540)
T PRK06164 469 VPVAFVI 475 (540)
T ss_pred eEEEEEE
Confidence 6666653
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=496.22 Aligned_cols=438 Identities=17% Similarity=0.159 Sum_probs=340.2
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHH-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++++|+++|+++.++ ++||+||.++++++|+.|. +. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 35 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 106 (560)
T PRK08751 35 VAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNV 106 (560)
T ss_pred HHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEecc
Confidence 378999999998776 9999999999999999997 57 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCC-------------------CCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND-------------------VGIP 324 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~~ 324 (660)
+|.++.+++.+++++++++++++++.... .+.......+...+++...... ....
T Consensus 107 ~p~~~~~~~~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08751 107 NPLYTPRELKHQLIDSGASVLVVIDNFGT------TVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY 180 (560)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEcchhHH------HHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccccc
Confidence 99999999999999999999999875321 1111111122111111100000 0000
Q ss_pred CCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC----CCCC-CE
Q 006121 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID----LKVG-DV 399 (660)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~----~~~~-~~ 399 (660)
..++...+.+....... .........++++++++|||||||+||||+++|+++...+.+....+. +.++ ++
T Consensus 181 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08751 181 RINGAIRFREALALGRK----HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEV 256 (560)
T ss_pred CCCccccHHHHHhccCC----CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCce
Confidence 00122334433322111 111223346789999999999999999999999999887776555543 3343 56
Q ss_pred EEEecCccccchhh-HHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEe
Q 006121 400 YCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (660)
Q Consensus 400 ~l~~~~~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 478 (660)
++...++.|..++. ..+.++..|++.++.....++..+++.|+++++|++..+|+++..+.+.......++++||.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~ 336 (560)
T PRK08751 257 VITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLG 336 (560)
T ss_pred EEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeee
Confidence 67778888887763 45677888999888775668889999999999999999999999998876555567889999999
Q ss_pred ecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE
Q 006121 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (660)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v 558 (660)
||++++..+.+.+++.+ ++++++.||+||++..++..........+++|+|+++++++|+|++++++|.|+. |||+|
T Consensus 337 gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v 413 (560)
T PRK08751 337 GGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI--GELCI 413 (560)
T ss_pred CCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999988888765 4789999999999875443322223445789999999999999999999999986 99999
Q ss_pred -e----ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 559 -F----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 559 -~----~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
+ .||++ +++.++++|..+ .||+|||+|++++||+++++||.||+||++|++|+|.|||++|..
T Consensus 414 ~~~~~~~gy~~------~~~~~~~~~~~~------g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~ 481 (560)
T PRK08751 414 KGPQVMKGYWK------RPEETAKVMDAD------GWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAM 481 (560)
T ss_pred ecCccchhhcC------ChhhhhhccccC------CCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHh
Confidence 3 35554 677777777532 399999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecCc-ceeeee
Q 006121 634 RSSFKCLHIYAWLYFHK-LELIFY 656 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~~-~~l~a~ 656 (660)
||+|.+++|+...+... ..+.++
T Consensus 482 ~~~v~~~~v~~~~~~~~ge~~~~~ 505 (560)
T PRK08751 482 MPGVLEVAAVGVPDEKSGEIVKVV 505 (560)
T ss_pred CcCeeeeEEEecCCCCCCceEEEE
Confidence 99999998887655443 334444
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=505.62 Aligned_cols=426 Identities=17% Similarity=0.135 Sum_probs=321.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++||++|+++.+. ..+.++.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 59 a~~~pd~~a~~~~~~--~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~ 136 (624)
T PRK12582 59 AAEAPDRPWLAQREP--GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVS 136 (624)
T ss_pred HHHCCCchheecccC--CCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeecc
Confidence 478999999987542 113456999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCH-----HHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccC
Q 006121 265 DSFAA-----REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (660)
Q Consensus 265 p~~p~-----~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (660)
|.++. +++.+++++++++++|+++.... ......+. ......+++..... ......++++....
T Consensus 137 p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~-~~~~~~i~~~~~~~------~~~~~~~~~~~~~~ 205 (624)
T PRK12582 137 PAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPF----ARALAALD-LLDVTVVHVTGPGE------GIASIAFADLAATP 205 (624)
T ss_pred CccccccCCHHHHHHHHHhcCCcEEEecCHHHH----HHHHHhhh-hcCceEEEEcCCCc------ccccccHHHHhhcC
Confidence 99985 89999999999999999863100 00011111 11112222221110 01123455554322
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCC---CCEEEEecCccccchh-hHH
Q 006121 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV---GDVYCWPTNLGWVMGP-VIL 415 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~-~~~ 415 (660)
.. ...........++++++|+|||||||.||||+++|+++.+.+......+.... .++++.+.|++|.++. ..+
T Consensus 206 ~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~ 283 (624)
T PRK12582 206 PT--AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANF 283 (624)
T ss_pred Cc--chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHH
Confidence 11 00001112345789999999999999999999999999887766554444444 5899999999999887 456
Q ss_pred HHhhhcCcEEEEecCCCCh---hhHHHHHHHcCCeEEeecHHHHHHHHhcCCC----CCCCccCccEEEeecCCCChhhH
Q 006121 416 FSSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDDD 488 (660)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~----~~~~l~~lr~v~~gGe~l~~~~~ 488 (660)
+.++..|+++++.++.+++ ..+++.++++++|+++++|++++.|++.... ....+++||.+++||+++++++.
T Consensus 284 ~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~ 363 (624)
T PRK12582 284 NGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLY 363 (624)
T ss_pred HHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHH
Confidence 7889999999997644443 3467778899999999999999988754211 12346899999999999999999
Q ss_pred HHHHhhC----C-CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e---
Q 006121 489 LWLSSKA----W-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--- 559 (660)
Q Consensus 489 ~~~~~~~----~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~--- 559 (660)
+++.+.. + +++++|.||+||++.++.... ......+++|+|++|++++|+ |.|++ |||+| +
T Consensus 364 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~-~~~~~~~svG~p~pg~~v~i~-------~~G~~--GEl~vrg~~v 433 (624)
T PRK12582 364 ERMQALAVRTTGHRIPFYTGYGATETAPTTTGTH-WDTERVGLIGLPLPGVELKLA-------PVGDK--YEVRVKGPNV 433 (624)
T ss_pred HHHHHHHHhhcCCCceEEeccccccccceeeccc-CCCCCCCCCCcCCCCcEEEEc-------cCCCc--eEEEEECCcc
Confidence 8888753 2 357999999999986543222 223456789999999999985 56775 99999 3
Q ss_pred -ccccCCcccccCcccccccccccccCCCceeEeeCceEEE-e---cCceEEEEeccCCcccc-CceeecchHH--HHhh
Q 006121 560 -PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR-T---VGGYIIVQGRADDTMNL-GGIKALLLPL--TFLS 631 (660)
Q Consensus 560 -~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~-~---~dG~l~~~GR~dd~iki-~G~rv~~~eI--E~~L 631 (660)
.||++ +++.|++.|..+ +||+|||+|++ | +||+|+|+||+||+||+ +|++|+|.|| |.++
T Consensus 434 ~~GY~~------~p~~t~~~f~~d------gw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l 501 (624)
T PRK12582 434 TPGYHK------DPELTAAAFDEE------GFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVA 501 (624)
T ss_pred cccccC------CccchhhhcCcc------CCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHH
Confidence 34554 778888888543 39999999998 4 56999999999999995 6999999888 5788
Q ss_pred cCCCCceeeEEEEEeec
Q 006121 632 SPRSSFKCLHIYAWLYF 648 (660)
Q Consensus 632 ~~~~~V~~a~vv~~~~~ 648 (660)
.+||.|.+|+|+...+.
T Consensus 502 ~~~p~V~~a~VvG~~~~ 518 (624)
T PRK12582 502 ACSPVIHDAVVAGQDRA 518 (624)
T ss_pred hcCcchheEEEEcCCCC
Confidence 99999999998875433
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=490.71 Aligned_cols=437 Identities=20% Similarity=0.167 Sum_probs=338.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+.+.+. .+||.||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 31 ~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 102 (541)
T TIGR03205 31 AADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLS 102 (541)
T ss_pred HHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 378999999998777 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc-CCCcEEEEcCCCCCC------CCCCCCCCcchhhhhc
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-APLKAIVLPAIGNDV------GIPLREQDLSWKDFLS 337 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~ 337 (660)
|.++.+++.+++++++++++++++.. ...+...+.... .....+++....... .........++++++.
T Consensus 103 ~~~~~~~l~~~i~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 103 PLDGERALSHKLSDSGARLLITSDLA----ALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred CCCCHHHHHHHHhhcCceEEEEeCch----hhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 99999999999999999999998631 001111111111 111222222111000 0011122345565554
Q ss_pred cCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhc------CCCCCCEEEEecCccccch
Q 006121 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI------DLKVGDVYCWPTNLGWVMG 411 (660)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~ 411 (660)
.... ........++++++++|||||||+||||+++|+++.+..... ..+ .....+++++..|+.|..+
T Consensus 179 ~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 252 (541)
T TIGR03205 179 GAAA-----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYA 252 (541)
T ss_pred cCCC-----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHH
Confidence 3221 111223467899999999999999999999999987654422 111 2234578999999999877
Q ss_pred h-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHH
Q 006121 412 P-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490 (660)
Q Consensus 412 ~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~ 490 (660)
. ..++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......+++++|.+++||+++++++.++
T Consensus 253 ~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~ 331 (541)
T TIGR03205 253 LTVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANF 331 (541)
T ss_pred HHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHH
Confidence 6 45778899999988875 568899999999999999999999999998754444456789999999999999999888
Q ss_pred HHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEE--cCCCCcCCCCCCceeEEEE-ec----ccc
Q 006121 491 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECGVPYPDDQPCVGEVGL-FP----LYL 563 (660)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vl--d~~~~~vp~G~~giGel~v-~~----~y~ 563 (660)
+.+.+ +.++++.||+||++...+..........+++|+|++++.++|+ |+++++++.|+. |||++ ++ ||+
T Consensus 332 ~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~--Gel~v~~~~~~~gy~ 408 (541)
T TIGR03205 332 FERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV--GELRIRGPNVTRGYW 408 (541)
T ss_pred HHHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCe--eEEEEecCCcccccc
Confidence 87765 4889999999999875544333333445789999999998875 578899999986 99999 33 454
Q ss_pred CCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEE
Q 006121 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIY 643 (660)
Q Consensus 564 ~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv 643 (660)
+ +++.+++.|.. + ||+|||++++++||+++++||.||+||++|+||+|.|||++|.+|++|.+++|+
T Consensus 409 ~------~~~~~~~~~~~-----~--~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~ 475 (541)
T TIGR03205 409 N------RPEESAEAFVG-----D--RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVI 475 (541)
T ss_pred C------ChhhhHhhhcc-----C--CcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEE
Confidence 4 66677777752 2 899999999999999999999999999999999999999999999999999888
Q ss_pred EEeecC-cceeeeec
Q 006121 644 AWLYFH-KLELIFYF 657 (660)
Q Consensus 644 ~~~~~~-~~~l~a~~ 657 (660)
...+.. +..+++++
T Consensus 476 ~~~~~~~~~~~~~~v 490 (541)
T TIGR03205 476 GIPDQYRGEAAKAFV 490 (541)
T ss_pred ecCCcccCceEEEEE
Confidence 765443 44566654
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=486.73 Aligned_cols=442 Identities=20% Similarity=0.228 Sum_probs=350.1
Q ss_pred cchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHH
Q 006121 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (660)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~l 251 (660)
+|.+.+++..+. ++.+||++|++..+. .+||.||.++++++|++|.+. +++|++|+++++|+++++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNV-VEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHH-hcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 456666666542 467999999998776 999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcc
Q 006121 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLS 331 (660)
Q Consensus 252 A~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 331 (660)
||+++|++++|+++.++.+++.++++.++++++++++... +.+.......+....++..... ......
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 141 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVGRP------EAGEVQ 141 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH------HHHHHHHhcCCCccEEEEeCCC------Cccccc
Confidence 9999999999999999999999999999999999987532 1112222222221111111110 011223
Q ss_pred hhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHH-hhHhcCCCCCCEEEEecCccccc
Q 006121 332 WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVM 410 (660)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 410 (660)
+.++...... ........++++++++|||||||.||||+++|+++...+.. ....++++++|+++...|++|+.
T Consensus 142 ~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 216 (508)
T TIGR02262 142 LAELLATESE-----QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAY 216 (508)
T ss_pred HHHHhhcCCC-----ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHH
Confidence 4443332211 11122345789999999999999999999999999876654 44567889999999999999998
Q ss_pred hh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHH
Q 006121 411 GP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDL 489 (660)
Q Consensus 411 ~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~ 489 (660)
++ ..++.++..|+++++.++..++..+++.|+++++|.+.++|+++..++...........++|.+++||+++++++.+
T Consensus 217 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~ 296 (508)
T TIGR02262 217 GLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQ 296 (508)
T ss_pred HHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHH
Confidence 88 45778899999999988767889999999999999999999999988765433334567899999999999999998
Q ss_pred HHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccC
Q 006121 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLG 564 (660)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~ 564 (660)
.|.+.+ ++++++.||+||++.+.... .......+++|+|++|++++|+|++++++|.|+. |||++ + .+|++
T Consensus 297 ~~~~~~-~~~v~~~YG~tE~~~~~~~~-~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~--Gel~i~~~~~~~gY~~ 372 (508)
T TIGR02262 297 RWQARF-GVDIVDGIGSTEMLHIFLSN-LPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEP--GELLISGPSSATMYWN 372 (508)
T ss_pred HHHHHh-CCchhhCccccccCceeecC-CccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCe--eEEEEecCccccccCC
Confidence 888877 47899999999998644332 2223345689999999999999999999999996 99999 3 34443
Q ss_pred CcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEE
Q 006121 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYA 644 (660)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~ 644 (660)
+++.++..|. .+||+|||++++++||.+++.||.||+||++|.+|+|.|||++|.++|+|.+++++.
T Consensus 373 ------~~~~~~~~~~-------~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~ 439 (508)
T TIGR02262 373 ------NRAKTRDTFQ-------GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVG 439 (508)
T ss_pred ------CHHHhHhhhh-------cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence 6666666553 239999999999999999999999999999999999999999999999999998887
Q ss_pred EeecC-cceeeeec
Q 006121 645 WLYFH-KLELIFYF 657 (660)
Q Consensus 645 ~~~~~-~~~l~a~~ 657 (660)
..+.. ...+++|+
T Consensus 440 ~~~~~~~~~~~~~v 453 (508)
T TIGR02262 440 VEDEDGLIKPKAFI 453 (508)
T ss_pred ccccCCCceeEEEE
Confidence 54433 33445554
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=489.44 Aligned_cols=419 Identities=17% Similarity=0.163 Sum_probs=324.6
Q ss_pred CCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-c-CCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 188 ~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v-~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
..|+++|+++.+. .+||+||.++++++|+.|.+. + ++||+|+++++|++++++++|||+++|++++|++|
T Consensus 13 ~~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p 84 (540)
T PRK13388 13 AGDDTIAVRYGDR--------TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNT 84 (540)
T ss_pred ccCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecc
Confidence 3699999998776 999999999999999999999 9 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (660)
.++.+++..++++++++++|+++.... .+..+. ......+++. ...+.+++.....
T Consensus 85 ~~~~~~l~~~l~~~~~~~~i~~~~~~~------~~~~~~-~~~~~~i~~~-------------~~~~~~~~~~~~~---- 140 (540)
T PRK13388 85 TRRGAALAADIRRADCQLLVTDAEHRP------LLDGLD-LPGVRVLDVD-------------TPAYAELVAAAGA---- 140 (540)
T ss_pred cCChHHHHHHHHhcCCCEEEEChhhhH------HHHhhc-ccCceEEEcc-------------chhhhhhhccccC----
Confidence 999999999999999999999875321 111110 0011222221 0123333321111
Q ss_pred CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhH-HHHhhhcCcE
Q 006121 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGAT 424 (660)
Q Consensus 346 ~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~ 424 (660)
..+.....++++++++|||||||+||||+++|+++.+........++++++|+++..+|+.|..++.. ++.+|..|++
T Consensus 141 -~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~ 219 (540)
T PRK13388 141 -LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAA 219 (540)
T ss_pred -cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcE
Confidence 01112346799999999999999999999999999988887788899999999999999999988855 4468999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+++.+ ..++..+++.|+++++|++..+|+.+..++..........++++. ++ |+.++++...++.+.+ +++++|.|
T Consensus 220 ~v~~~-~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~-~~-G~~~~~~~~~~~~~~~-~~~l~~~Y 295 (540)
T PRK13388 220 VALPA-KFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRV-AF-GNEASPRDIAEFSRRF-GCQVEDGY 295 (540)
T ss_pred EEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEE-EE-CCCCCHHHHHHHHHHh-CCceeccc
Confidence 98875 467889999999999999999999999988754332222345664 33 5566777777777766 47899999
Q ss_pred cccccccccccCCcCCCCcccccCcCCCCceEE-----------EEcCCCCcCC-CCCCceeEEEEe--ccccCCccccc
Q 006121 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPYP-DDQPCVGEVGLF--PLYLGASDRLL 570 (660)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-----------vld~~~~~vp-~G~~giGel~v~--~~y~~~~~~~~ 570 (660)
|+||++.+++.. . ....+++|+|++|++++ ++|++|++++ .|. +|||++. ++...+ |+.
T Consensus 296 G~tE~~~~~~~~-~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~--~GEl~v~~g~~~~~g--Y~~ 368 (540)
T PRK13388 296 GSSEGAVIVVRE-P--GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA--IGELVNTAGAGFFEG--YYN 368 (540)
T ss_pred ccccccceeecC-C--CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCc--ceEEEEecCCccccc--ccC
Confidence 999998654332 1 23456899999998764 5666777664 344 4999994 222211 222
Q ss_pred CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 571 ~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
+++.+++.|.. | ||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|+...+..
T Consensus 369 ~~~~t~~~~~~-----g--~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~ 441 (540)
T PRK13388 369 NPEATAERMRH-----G--MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERV 441 (540)
T ss_pred ChHHHHHHhhc-----C--ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCC
Confidence 66777777631 2 999999999999999999999999999999999999999999999999999988876543
Q ss_pred cceeeeec
Q 006121 650 KLELIFYF 657 (660)
Q Consensus 650 ~~~l~a~~ 657 (660)
+..+++++
T Consensus 442 g~~~~~~v 449 (540)
T PRK13388 442 GDQVMAAL 449 (540)
T ss_pred CceeEEEE
Confidence 34555544
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=488.63 Aligned_cols=443 Identities=16% Similarity=0.173 Sum_probs=338.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|++.... +..+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~~~~~~~~~~~~----~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 95 (542)
T PRK06018 20 ARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVN 95 (542)
T ss_pred HHhCCCceEEEeecc----CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccc
Confidence 478999999985322 1245899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
|.++.+++..+++++++++++++..+. +.+.......+. ..+++..... .......+...|.+++.....
T Consensus 96 ~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 167 (542)
T PRK06018 96 PRLFPEQIAWIINHAEDRVVITDLTFV------PILEKIADKLPSVERYVVLTDAAH-MPQTTLKNAVAYEEWIAEADG- 167 (542)
T ss_pred cccCHHHHHHHHhccCCCEEEEccccH------HHHHHHHhhCCCccEEEEeccccc-ccccCccccccHHHHhccCCc-
Confidence 999999999999999999999987542 222222222222 1222221111 010111123345555443221
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhH-H-HHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhh
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-R-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 420 (660)
........++++++++|||||||.||||+++|++.+ + ........++++.+|+++...|++|+.++...+.++.
T Consensus 168 ----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~ 243 (542)
T PRK06018 168 ----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243 (542)
T ss_pred ----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhh
Confidence 112234466889999999999999999999999743 2 2233345677889999999999999888766778899
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.....++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+++++ + ++++
T Consensus 244 ~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~ 321 (542)
T PRK06018 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-GVEV 321 (542)
T ss_pred cCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-CCCe
Confidence 9999998765668889999999999999999999999998765545557889999999999999999999987 4 6899
Q ss_pred eccccccccccccccCCcCC----------CCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccc
Q 006121 501 IESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRL 569 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~ 569 (660)
++.||+||++.+.+...... .....++|+|.++++++|+|++++++|.+...+|||++ ++.... +|
T Consensus 322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~---gy 398 (542)
T PRK06018 322 RHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAA---AY 398 (542)
T ss_pred EeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcch---hh
Confidence 99999999986544321111 01235789999999999999999999874212599999 333222 22
Q ss_pred cCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC
Q 006121 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH 649 (660)
Q Consensus 570 ~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~ 649 (660)
++. +...+. ..+||+|||++++++||+++++||.||+||++|++|++.|||++|.+||+|.+++|+...+..
T Consensus 399 ~~~--~~~~~~------~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~ 470 (542)
T PRK06018 399 YRV--DGEILD------DDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPK 470 (542)
T ss_pred hcC--cccEec------CCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCC
Confidence 231 111221 334999999999999999999999999999999999999999999999999999998766543
Q ss_pred -cceeeeec
Q 006121 650 -KLELIFYF 657 (660)
Q Consensus 650 -~~~l~a~~ 657 (660)
+.++..++
T Consensus 471 ~~~~~~~~v 479 (542)
T PRK06018 471 WDERPLLIV 479 (542)
T ss_pred cCceeEEEE
Confidence 33444443
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=486.60 Aligned_cols=416 Identities=15% Similarity=0.114 Sum_probs=327.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++.+|+++|+++.+. .+||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 44 ~a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl 115 (516)
T PRK13383 44 TAARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPI 115 (516)
T ss_pred HHHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEc
Confidence 3478999999998766 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
++.++.+++.+++++++++++++++.+.+ .+.. .......+... .....+ . .
T Consensus 116 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~-~~~~~~~~~~~-----------~~~~~~----~-~-- 167 (516)
T PRK13383 116 STEFRSDALAAALRAHHISTVVADNEFAE---------RIAG-ADDAVAVIDPA-----------TAGAEE----S-G-- 167 (516)
T ss_pred CccCCHHHHHHHHhcCCCCEEEEchhHHH---------HHHh-hhcceEEeccc-----------hhhhhc----C-C--
Confidence 99999999999999999999999875421 1111 11112222100 000000 0 0
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHH--HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC--TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
..+..+++.++++|||||||+||||+++|+..... .......+++.++++++...|++|..++..++.++..
T Consensus 168 ------~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~ 241 (516)
T PRK13383 168 ------GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIAL 241 (516)
T ss_pred ------CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhc
Confidence 00112356789999999999999999999843221 1222345678899999999999999999888889999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
|+++++.. ..++..+++.++++++|.+.++|+++..|...... ....++++|.+++||+++++++.+++.+.++ ..
T Consensus 242 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~ 319 (516)
T PRK13383 242 GGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG-DI 319 (516)
T ss_pred CCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcC-ch
Confidence 99998865 57889999999999999999999999999865321 2235789999999999999999999988775 78
Q ss_pred eeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCccccccc
Q 006121 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~ 578 (660)
++|.||+||++..+...........+++|+|+++++++|+|+++++++.|+. |||++ ++.... +|++.+. ..
T Consensus 320 v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~---~Y~~~~~--~~ 392 (516)
T PRK13383 320 LYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVT--GRIFVGGELAGT---RYTDGGG--KA 392 (516)
T ss_pred hhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCc--eEEEEecCcccc---cccCCch--hh
Confidence 9999999999864433222223345689999999999999999999999996 99999 332222 1222211 11
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
+ . +.||+|||+|++|+||+++++||.||+||++|++|+|.|||.+|.+||.|.+++|+...+.. +..+.+|+
T Consensus 393 ~-----~--~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v 465 (516)
T PRK13383 393 V-----V--DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFV 465 (516)
T ss_pred e-----e--cCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEE
Confidence 1 1 23999999999999999999999999999999999999999999999999999888765433 45566665
Q ss_pred c
Q 006121 658 S 658 (660)
Q Consensus 658 ~ 658 (660)
.
T Consensus 466 ~ 466 (516)
T PRK13383 466 V 466 (516)
T ss_pred E
Confidence 4
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-55 Score=486.58 Aligned_cols=427 Identities=15% Similarity=0.140 Sum_probs=341.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 22 ~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 93 (524)
T PRK06188 22 LKRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH 93 (524)
T ss_pred HHHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecc
Confidence 368999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc--EEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
|..+.+++..++++++++.+++++... ...........+.. .+.+..... .....+......
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-- 157 (524)
T PRK06188 94 PLGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPSLKHVLTLGPVPD---------GVDLLAAAAKFG-- 157 (524)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCCceEEEEeCCccc---------hhhHHHhhhccC--
Confidence 999999999999999999999987521 01111111111111 111111000 000111111000
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcC
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 422 (660)
+ ........++++++++|||||||.||||+++|+++.+.+.+....+++..++++++..|++|..++. ++.+++.|
T Consensus 158 --~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G 233 (524)
T PRK06188 158 --P-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRG 233 (524)
T ss_pred --c-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcC
Confidence 0 0111122456799999999999999999999999999888888888999999999999999987764 67889999
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
+++++.+ ..++..+++.|+++++|++..+|+++..|++.......+++++|.+++||++++++....+.+.++ +.+++
T Consensus 234 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~ 311 (524)
T PRK06188 234 GTVIVLA-KFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQ 311 (524)
T ss_pred CEEEEcC-CCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhC-chhhh
Confidence 9999987 467899999999999999999999999999876655667899999999999999998887777664 67999
Q ss_pred cccccccccccccCCcC-----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCc
Q 006121 503 SCGGTELSSAYIQGSLL-----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNA 572 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~ 572 (660)
.||+||++..+...... ......++|+|+++++++|+|+++++++.|+. |||++ + .||++ ++
T Consensus 312 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~ 383 (524)
T PRK06188 312 YYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEV--GEICVRGPLVMDGYWN------RP 383 (524)
T ss_pred eeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCe--eEEEEECcchhhhhcC------Ch
Confidence 99999997544433221 22345689999999999999999999999996 99999 2 34544 55
Q ss_pred ccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cc
Q 006121 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KL 651 (660)
Q Consensus 573 ~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~ 651 (660)
+.+...|. ..||+|||+|++++||+++|+||.|++||++|.+|+|.|||++|.+||+|.+++|+...+.. +.
T Consensus 384 ~~~~~~~~-------~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 456 (524)
T PRK06188 384 EETAEAFR-------DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGE 456 (524)
T ss_pred HHhhhhhc-------CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCc
Confidence 55555553 23999999999999999999999999999999999999999999999999999888765443 34
Q ss_pred eeeeec
Q 006121 652 ELIFYF 657 (660)
Q Consensus 652 ~l~a~~ 657 (660)
.+.+++
T Consensus 457 ~~~~~v 462 (524)
T PRK06188 457 AVTAVV 462 (524)
T ss_pred eEEEEE
Confidence 555554
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=484.35 Aligned_cols=420 Identities=19% Similarity=0.186 Sum_probs=345.3
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
+.+|+++|+.+.+. .+||+||.++++++|.+|.+. +++|++|+++++|+.++++++|||+++|++++|+++
T Consensus 13 ~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~ 84 (503)
T PRK04813 13 QTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDV 84 (503)
T ss_pred HhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCC
Confidence 67899999998777 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (660)
.++.+++.++++.++++++++++...... .... .+.++++...... ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~----------------~~~~~~~~~~~~~--~~ 132 (503)
T PRK04813 85 SSPAERIEMIIEVAKPSLIIATEELPLEI--------------LGIP----------------VITLDELKDIFAT--GN 132 (503)
T ss_pred CChHHHHHHHHHhcCCCEEEecccccccc--------------cCCc----------------EEehHHhhhhhhc--cc
Confidence 99999999999999999999987531000 0000 0111111111000 00
Q ss_pred CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEE
Q 006121 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (660)
Q Consensus 346 ~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~l 425 (660)
.........++++++++|||||||.||||.++|+++.....+....+.+..+++++...|++|+.+++.++.+|..|+++
T Consensus 133 ~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~ 212 (503)
T PRK04813 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTL 212 (503)
T ss_pred cccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEE
Confidence 00112234678899999999999999999999999998888888888899999999999999999988889999999999
Q ss_pred EEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 426 ALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 426 v~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++.+.. .++..+++.++++++|++..+|++++.+.........+++++|.++++|+++++.+.+++.+.++++.+++.
T Consensus 213 v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~ 292 (503)
T PRK04813 213 VALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNT 292 (503)
T ss_pred EEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeC
Confidence 998753 378899999999999999999999988765544445568899999999999999999999999888899999
Q ss_pred ccccccccccccCCc----CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 504 CGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 504 YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
||+||++..++.... .......++|+|.++++++|+|+++.++|.|+. |||++ + .||++ +++.
T Consensus 293 yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~ 364 (503)
T PRK04813 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQ--GEIVISGPSVSKGYLN------NPEK 364 (503)
T ss_pred cccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCc--eEEEEeccccccccCC------ChhH
Confidence 999999754332211 112334579999999999999999999999986 99999 3 45555 6667
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Cccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l 653 (660)
|.+.|..+ .|.+||+|||+|++ +||++++.||.||+||++|++|+|.|||++|.++|+|++++|+..... ....+
T Consensus 365 ~~~~~~~~---~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 440 (503)
T PRK04813 365 TAEAFFTF---DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYL 440 (503)
T ss_pred hHHhhccC---CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEE
Confidence 77666542 35579999999999 999999999999999999999999999999999999999988864332 24556
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++++.
T Consensus 441 ~~~v~ 445 (503)
T PRK04813 441 IAYVV 445 (503)
T ss_pred EEEEE
Confidence 66653
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=485.00 Aligned_cols=442 Identities=18% Similarity=0.135 Sum_probs=339.0
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+.+.++ .+||.||.++++++|+.|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 12 ~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l 83 (533)
T PRK07798 12 VADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNV 83 (533)
T ss_pred HHHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEec
Confidence 3478999999999777 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc--EEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
++.++.+++.+++++++++++++++... .....+....+.. .+.+..... .....+.+++++++.....
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 154 (533)
T PRK07798 84 NYRYVEDELRYLLDDSDAVALVYEREFA------PRVAEVLPRLPKLRTLVVVEDGSG---NDLLPGAVDYEDALAAGSP 154 (533)
T ss_pred CcCCCHHHHHHHHhhcCCCEEEEchhhH------HHHHHHhccCCCccEEEEecCCcc---cccCCccccHHHHHhccCC
Confidence 9999999999999999999999987432 1122222222222 222221111 1111234567766554322
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh---------cCC------CCCCEEEEecCc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---------IDL------KVGDVYCWPTNL 406 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---------~~~------~~~~~~l~~~~~ 406 (660)
...... ...+.++++|||||||.||||+++|+++...+...... ..+ ..+++++..+|+
T Consensus 155 -----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 228 (533)
T PRK07798 155 -----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPL 228 (533)
T ss_pred -----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecch
Confidence 011111 22345799999999999999999999987654432211 111 567899999999
Q ss_pred cccchhhHHHHhhhcCcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHH-HHhcCC-CCCCCccCccEEEeecCCC
Q 006121 407 GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKA-WRNTNC-LEGLDWTKIRSFASTGETS 483 (660)
Q Consensus 407 ~~~~~~~~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~-l~~~~~-~~~~~l~~lr~v~~gGe~l 483 (660)
.|+.+++.++.+|+.|+++++.+. ..++..+++.|+++++|.+.++|..+.. +..... ....+++++|.+++||+++
T Consensus 229 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~ 308 (533)
T PRK07798 229 MHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALF 308 (533)
T ss_pred hhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCC
Confidence 999999999999999999999873 4578999999999999999999876533 333221 2345678999999999999
Q ss_pred ChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccC--cCCCCceEEEEcCCCCcCCCCCCceeEEEEecc
Q 006121 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS--TATMTAGLVILDECGVPYPDDQPCVGEVGLFPL 561 (660)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG--~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~ 561 (660)
++++.+++.+.+++..+++.||+||++.+....... ...+.| ++.++..++|+|+++++++.|+.+.|+++.++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~---~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~ 385 (533)
T PRK07798 309 SPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK---GAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGH 385 (533)
T ss_pred CHHHHHHHHHHcCCCeEEeeecccccccccccCCCC---CCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEeecC
Confidence 999999999888778899999999997543332211 112344 888999999999999999999875577776442
Q ss_pred ccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeE
Q 006121 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLH 641 (660)
Q Consensus 562 y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~ 641 (660)
... .|+.+++.|++.|... ++.+||+|||+|++++||+|+++||.|++||++|++|+|.|||++|.++|+|.+++
T Consensus 386 ~~~--gy~~~~~~t~~~f~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~ 460 (533)
T PRK07798 386 IPL--GYYKDPEKTAETFPTI---DGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADAL 460 (533)
T ss_pred ccc--cccCChhhhHHhhccC---CCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEE
Confidence 211 1223667788777652 36679999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeecC-cceeeeec
Q 006121 642 IYAWLYFH-KLELIFYF 657 (660)
Q Consensus 642 vv~~~~~~-~~~l~a~~ 657 (660)
|+...+.. +..+.+++
T Consensus 461 v~~~~~~~~~~~~~~~v 477 (533)
T PRK07798 461 VVGVPDERWGQEVVAVV 477 (533)
T ss_pred EEeccCcccCceEEEEE
Confidence 87654332 34455544
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=485.20 Aligned_cols=438 Identities=17% Similarity=0.179 Sum_probs=335.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++++|+++|+++.+. .+||.||.++++++|++|.+ . +++|++|+++++|++++++++|||+++|++++|+
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 104 (560)
T PRK08974 33 VARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNV 104 (560)
T ss_pred HHhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEecc
Confidence 378999999998766 99999999999999999985 7 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCC-------------------
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP------------------- 324 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------- 324 (660)
+|.++.+++.+++++++++++++++... ..+..+........+++..........
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (560)
T PRK08974 105 NPLYTPRELEHQLNDSGAKAIVIVSNFA------HTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKY 178 (560)
T ss_pred CccCCHHHHHHHHHhcCceEEEEecccc------HHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccc
Confidence 9999999999999999999999986532 112222211111111111100000000
Q ss_pred CCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcC---CCCCCEEE
Q 006121 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---LKVGDVYC 401 (660)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~~~~l 401 (660)
..+...++.+....... .........++++++++|||||||+||||+++|+++...+......+. ...+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
T PRK08974 179 HLPDAISFRSALHKGRR----MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254 (560)
T ss_pred cCCCcccHHHHhhccCC----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEE
Confidence 00001111222111111 011122346789999999999999999999999999876654433322 33466778
Q ss_pred EecCccccchh-hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeec
Q 006121 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (660)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG 480 (660)
..+|+.|.++. ...+.++..|+++++.....++..+++.++++++|++..+|++++.|.+.......+++++|.+++||
T Consensus 255 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg 334 (560)
T PRK08974 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGG 334 (560)
T ss_pred EeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecC
Confidence 88888887775 45667788999988876556788899999999999999999999999876554556678999999999
Q ss_pred CCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e
Q 006121 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F 559 (660)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~ 559 (660)
++++..+.++|.+.+ +++++|.||+||++..++..........+++|+|+++++++|+|++++++|.|+. |||+| +
T Consensus 335 ~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g 411 (560)
T PRK08974 335 MAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP--GELWVKG 411 (560)
T ss_pred ccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCc--eEEEEec
Confidence 999999988888765 5889999999999875544333333445789999999999999999999999996 99999 3
Q ss_pred ----ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCC
Q 006121 560 ----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRS 635 (660)
Q Consensus 560 ----~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~ 635 (660)
.+|++ +++.+++.|. + .||+|||+|+++++|+++++||.||+||++|++|+|.|||++|.+||
T Consensus 412 ~~~~~gy~~------~~~~~~~~~~-~------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~ 478 (560)
T PRK08974 412 PQVMLGYWQ------RPEATDEVIK-D------GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHP 478 (560)
T ss_pred CCcchhhcC------Chhhhhhhhh-c------CCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCC
Confidence 34444 5666766662 2 29999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEEeecC-cceeeeec
Q 006121 636 SFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 636 ~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
+|.+++|+...+.. +..+++++
T Consensus 479 ~v~~~~v~~~~~~~~g~~~~~~v 501 (560)
T PRK08974 479 KVLEVAAVGVPSEVSGEAVKIFV 501 (560)
T ss_pred CeeEEEEEeeecCCcceEEEEEE
Confidence 99999888765544 33444444
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-55 Score=488.68 Aligned_cols=441 Identities=19% Similarity=0.220 Sum_probs=334.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 34 a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~ 105 (563)
T PRK06710 34 ASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105 (563)
T ss_pred HHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccC
Confidence 368999999999877 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCC------------------CC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP------------------LR 326 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------~~ 326 (660)
|.++.+++.++++.++++++++++....... ..........+++.......... ..
T Consensus 106 p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T PRK06710 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVT------NVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179 (563)
T ss_pred cccCHHHHHHHHhccCCeEEEEeccchhhhh------ccchhhccceeEEeccccccccccccccchhhccccccccccc
Confidence 9999999999999999999999875321111 11111111111111000000000 00
Q ss_pred --CCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH-hcCCC-CCCEEEE
Q 006121 327 --EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLK-VGDVYCW 402 (660)
Q Consensus 327 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~-~~~~~l~ 402 (660)
.....|..+..... .........+++++|++|||||||.||||+++|+++......... .+... .++++++
T Consensus 180 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 180 ESETIHLWNSVEKEVN-----TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred ccchhhhhhhhhhccc-----cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 00001111111000 000111123578999999999999999999999998754433222 23443 3467889
Q ss_pred ecCccccchhh-HHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecC
Q 006121 403 PTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481 (660)
Q Consensus 403 ~~~~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe 481 (660)
..|+.|..+.. .++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|+........+++++|.+++||+
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~ 333 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIP-KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSA 333 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCC
Confidence 99999988774 4567889999999976 568889999999999999999999999998765545556789999999999
Q ss_pred CCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e
Q 006121 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F 559 (660)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~ 559 (660)
+++.++.+++.+.+ +++++|.||+||++..+...........+++|+|++++.++|+| ++++++|.|+. |||++ +
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~--Gel~v~g 410 (563)
T PRK06710 334 PLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEI--GEIVVKG 410 (563)
T ss_pred cCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCc--eEEEEec
Confidence 99999998887765 47899999999998644332222333456899999999999999 68899999996 99999 3
Q ss_pred ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCcee
Q 006121 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKC 639 (660)
Q Consensus 560 ~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~ 639 (660)
+....+ |+.+++.+...|. ..||+|||+|++++||+++++||.||+||++|.||+|.|||++|.+||+|.+
T Consensus 411 ~~~~~g--Y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~ 481 (563)
T PRK06710 411 PQIMKG--YWNKPEETAAVLQ-------DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQE 481 (563)
T ss_pred Cccchh--hhCChHHHhhhcc-------cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceee
Confidence 322221 2226667776663 2399999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeecC-cceeeeecc
Q 006121 640 LHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 640 a~vv~~~~~~-~~~l~a~~~ 658 (660)
++|+...+.. +..+++|+.
T Consensus 482 ~~v~~~~~~~~g~~~~~~v~ 501 (563)
T PRK06710 482 VVTIGVPDPYRGETVKAFVV 501 (563)
T ss_pred EEEEccccCCcCceeEEEEE
Confidence 9988766543 456666653
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-54 Score=476.01 Aligned_cols=429 Identities=17% Similarity=0.149 Sum_probs=331.6
Q ss_pred EEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHH
Q 006121 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAARE 271 (660)
Q Consensus 193 ~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~ 271 (660)
.|++..++ .+||.||+++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++|.++.++
T Consensus 3 ~~~~~~~~--------~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 74 (509)
T PRK12406 3 ATIISGDR--------RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE 74 (509)
T ss_pred eEEEECCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH
Confidence 46666666 999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEE--EcCCCC--------CCCCCCCCCCcchhhhhccCCC
Q 006121 272 IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV--LPAIGN--------DVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 272 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+.++++++++++++++..... .+.+..+..+.+ +..... ............|+++......
T Consensus 75 ~~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (509)
T PRK12406 75 IAYILEDSGARVLIAHADLLH---------GLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP 145 (509)
T ss_pred HHHHHhccCCcEEEEccchhh---------hhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCc
Confidence 999999999999999875321 111111111111 110000 0000011233445554432111
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 418 (660)
.....++++++++|||||||.||||+++|.+..+. .......+++.++++++...|+.|..+....+.+
T Consensus 146 --------~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (509)
T PRK12406 146 --------YDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRA 217 (509)
T ss_pred --------cCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHH
Confidence 11234689999999999999999999987664333 3334456788999999999999998887666778
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhCC
Q 006121 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (660)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~ 496 (660)
+..|+++++.+ ..++..+++.|+++++|++..+|+++..|++... ....+++++|.+++||+++++++.+++.+.++
T Consensus 218 ~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~ 296 (509)
T PRK12406 218 GRLGGVLVLQP-RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG 296 (509)
T ss_pred HhhheEEEEcc-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC
Confidence 89999999876 4688999999999999999999999999986532 23456789999999999999999999887664
Q ss_pred CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCcccc
Q 006121 497 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHE 575 (660)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t 575 (660)
+.+++.||+||++.+...........++++|+|+++++++|+|+++++++.|++ |||++ ++++.. ..++.+++.+
T Consensus 297 -~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~-~~y~~~~~~~ 372 (509)
T PRK12406 297 -PVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEI--GEIYSRIAGNPD-FTYHNKPEKR 372 (509)
T ss_pred -CcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCc--eEEEEECCcccc-ccccCCchhc
Confidence 789999999999875443322223455789999999999999999999999997 99999 433221 0111244445
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~ 654 (660)
+..+. .+||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|++++|+...+.. +..++
T Consensus 373 ~~~~~-------~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 445 (509)
T PRK12406 373 AEIDR-------GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALM 445 (509)
T ss_pred ccccC-------CCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeE
Confidence 44331 23999999999999999999999999999999999999999999999999999888766543 45566
Q ss_pred eecc
Q 006121 655 FYFS 658 (660)
Q Consensus 655 a~~~ 658 (660)
++++
T Consensus 446 ~~v~ 449 (509)
T PRK12406 446 AVVE 449 (509)
T ss_pred EEEE
Confidence 6664
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=479.51 Aligned_cols=411 Identities=18% Similarity=0.145 Sum_probs=326.8
Q ss_pred CCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCC
Q 006121 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (660)
Q Consensus 190 pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~ 267 (660)
++++|+++.+. ++||.||.++++++|++|+++ ++++++|+++++|++++++++|||+++|++++|++|.+
T Consensus 17 ~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 88 (529)
T PRK07867 17 DDDRGLYFEDS--------FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTR 88 (529)
T ss_pred cCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCC
Confidence 78999998776 999999999999999999996 88999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCC
Q 006121 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (660)
Q Consensus 268 p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (660)
+.+++.+++++++++++++++.... ....+. ....++... ...|.+++..... ..
T Consensus 89 ~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~----~~~~~~~~~-----------~~~~~~~l~~~~~----~~ 143 (529)
T PRK07867 89 RGAALARDIAHADCQLVLTESAHAE------LLDGLD----PGVRVINVD-----------SPAWADELAAHRD----AE 143 (529)
T ss_pred ChHHHHHHHHhCCCeEEEECHhHHH------HHHhhc----cCceEEEec-----------cccHHHHhcccCC----CC
Confidence 9999999999999999999975431 111111 111111110 1124443332111 01
Q ss_pred CCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhhcCcEEE
Q 006121 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLA 426 (660)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~lv 426 (660)
.......++++++++|||||||.||||+++|+++..........++++++|++++..|++|..++. .++.++..|++++
T Consensus 144 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 223 (529)
T PRK07867 144 PPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA 223 (529)
T ss_pred CCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence 112234678999999999999999999999999988888888888999999999999999998874 4667899999999
Q ss_pred EecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccc
Q 006121 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 506 (660)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (660)
+.+ .+++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.+ +++++|.||+
T Consensus 224 ~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~ 299 (529)
T PRK07867 224 LRR-KFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGS 299 (529)
T ss_pred ecC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecc
Confidence 876 568899999999999999999999999988764433233457884 56888887664 5566665 4789999999
Q ss_pred cccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCC------------CceeEEEE--e----ccccCCcc
Q 006121 507 TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQ------------PCVGEVGL--F----PLYLGASD 567 (660)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~------------~giGel~v--~----~~y~~~~~ 567 (660)
||+++.... .. ....+++|+|+++ ++|+| +++++++.|+ . |||++ + .||++
T Consensus 300 TE~~~~~~~-~~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~--Gel~i~~g~~~~~gy~~--- 369 (529)
T PRK07867 300 TEGGVAITR-TP--DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAI--GELVNTAGPGGFEGYYN--- 369 (529)
T ss_pred ccccccccc-CC--CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcc--eEEEEecCCcccccccC---
Confidence 999864332 11 2244679999999 77888 5788999987 6 99998 2 34444
Q ss_pred cccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEee
Q 006121 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLY 647 (660)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~ 647 (660)
+++.+.+.|. + .||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|++++|+...+
T Consensus 370 ---~~~~~~~~~~-~------g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~ 439 (529)
T PRK07867 370 ---DPEADAERMR-G------GVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPD 439 (529)
T ss_pred ---ChHhhhhhhc-C------CeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccC
Confidence 6666766663 1 29999999999999999999999999999999999999999999999999999998765
Q ss_pred cC-cceeeeec
Q 006121 648 FH-KLELIFYF 657 (660)
Q Consensus 648 ~~-~~~l~a~~ 657 (660)
.. +..+++++
T Consensus 440 ~~~g~~~~a~v 450 (529)
T PRK07867 440 PVVGDQVMAAL 450 (529)
T ss_pred CCCCeeEEEEE
Confidence 43 34555554
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-54 Score=482.70 Aligned_cols=441 Identities=19% Similarity=0.197 Sum_probs=337.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+.+.+. .+||+||+++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 43 a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 114 (567)
T PRK06178 43 ARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVS 114 (567)
T ss_pred HHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecC
Confidence 367899999998877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCC----CCCCC-------CCcchh
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG----IPLRE-------QDLSWK 333 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-------~~~~~~ 333 (660)
|.++.+++.+++++++++++++++... +.+..+.+......+++........ ..... ....+.
T Consensus 115 p~~~~~~~~~~l~~~~~~~ii~~~~~~------~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (567)
T PRK06178 115 PLFREHELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAI 188 (567)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHhhccCCcceEEEeccccccccccccccccccccccccccccc
Confidence 999999999999999999999987542 1222222222222222211110000 00000 001122
Q ss_pred hhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH-hcCCCCCCEEEEecCccccchh
Q 006121 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGP 412 (660)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 412 (660)
++...... .+.........++++|+++|||||||.||||+++|+++...+..... ...+.++++++.++|++|..+.
T Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~ 266 (567)
T PRK06178 189 DLLPALRA--CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGE 266 (567)
T ss_pred cHHHHhhc--cccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHH
Confidence 22221111 01111123346789999999999999999999999998876554433 3567889999999999998887
Q ss_pred -hHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEe--ecCCCChhhHH
Q 006121 413 -VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS--TGETSNVDDDL 489 (660)
Q Consensus 413 -~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~--gGe~l~~~~~~ 489 (660)
..++.++.+|+++++.+ .+++..+++.|+++++|.+..+|..+..|.+.......++++++.+.. +|+.++++..+
T Consensus 267 ~~~~~~~l~~G~~~~l~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (567)
T PRK06178 267 NFGLLFPLFSGATLVLLA-RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQ 345 (567)
T ss_pred HHHHHHHHHcCceEEEeC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHH
Confidence 46788999999999987 568899999999999999999999999988765444556778887654 45899999998
Q ss_pred HHHhhCCCCceeccccccccccccccCCcC--C----CCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e--
Q 006121 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLL--Q----PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F-- 559 (660)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~----~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~-- 559 (660)
.++..++...+.+.||+||++......... . ...++++|+|++|++++|+| ++++++|.|+. |||+| +
T Consensus 346 ~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~--Gel~v~g~~ 423 (567)
T PRK06178 346 RWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAE--GEIVVRTPS 423 (567)
T ss_pred HHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCc--eEEEEECCc
Confidence 888877644445689999987543332211 1 12346799999999999999 67999999996 99999 3
Q ss_pred --ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCc
Q 006121 560 --PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSF 637 (660)
Q Consensus 560 --~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V 637 (660)
.||++ +++.++..|. +| ||+|||+|++++||+++|+||+||+||++|++|+|.|||++|.++|+|
T Consensus 424 v~~gY~~------~~~~~~~~~~-----dg--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v 490 (567)
T PRK06178 424 LLKGYWN------KPEATAEALR-----DG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAV 490 (567)
T ss_pred ccccccC------Chhhhhhccc-----CC--ceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCe
Confidence 34444 6666766664 23 999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEeecC-cceeeeecc
Q 006121 638 KCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 638 ~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.+++|+...+.. +..+++++.
T Consensus 491 ~~~~v~~~~~~~~g~~~~~~v~ 512 (567)
T PRK06178 491 LGSAVVGRPDPDKGQVPVAFVQ 512 (567)
T ss_pred eEEEEEcCcCcccCcceEEEEE
Confidence 999888765443 345666553
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=482.29 Aligned_cols=437 Identities=17% Similarity=0.163 Sum_probs=330.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+++.+. ++||+||+++++++|.+|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 30 ~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 101 (567)
T PLN02479 30 AVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVN 101 (567)
T ss_pred HhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEec
Confidence 368999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc--------CC-CcEEEEcCCCCC---CCCCCCCCCcch
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--------AP-LKAIVLPAIGND---VGIPLREQDLSW 332 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~v~~~~~~---~~~~~~~~~~~~ 332 (660)
|.++.+++.+++++++++++++++.+... ...+... .. ...+++...... .......+...|
T Consensus 102 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
T PLN02479 102 IRLNAPTIAFLLEHSKSEVVMVDQEFFTL------AEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEY 175 (567)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhhhH------HHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccH
Confidence 99999999999999999999998754211 1111110 11 122232211100 000111234456
Q ss_pred hhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh
Q 006121 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (660)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 412 (660)
.+++..... +. ........+++++++|||||||.||||+++|+++..........+++++++++++.+|++|..++
T Consensus 176 ~~~~~~~~~---~~-~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~ 251 (567)
T PLN02479 176 EKFLETGDP---EF-AWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
T ss_pred HHHHhcccc---cc-ccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhH
Confidence 666543221 00 01112234577889999999999999999999987666555566788899999999999998886
Q ss_pred hHHH-HhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCC-CCccCccEEEeecCCCChhhHHH
Q 006121 413 VILF-SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-LDWTKIRSFASTGETSNVDDDLW 490 (660)
Q Consensus 413 ~~~~-~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~-~~l~~lr~v~~gGe~l~~~~~~~ 490 (660)
...+ .++..|.++++ . .+++..+++.++++++|++..+|++++.|.+...... .+++++|.++++|+++++.+.++
T Consensus 252 ~~~~~~~~~~g~~~~~-~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~ 329 (567)
T PLN02479 252 CFTWTLAALCGTNICL-R-QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFA 329 (567)
T ss_pred HHHHHHHhhcCceEec-c-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHH
Confidence 4443 34555555544 3 4688999999999999999999999999987543222 25789999999999999999888
Q ss_pred HHhhCCCCceeccccccccccccccCCcC----------CCCcccccCcCCCCce-EEEEc-CCCCcCCCCCCceeEEEE
Q 006121 491 LSSKAWYNAIIESCGGTELSSAYIQGSLL----------QPQAFGAFSTATMTAG-LVILD-ECGVPYPDDQPCVGEVGL 558 (660)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----------~~~~~~~iG~p~~~~~-~~vld-~~~~~vp~G~~giGel~v 558 (660)
+.+. +.++++.||+||+++.++..... ........|.|.++.. ++|+| ++++++|.+...+|||++
T Consensus 330 ~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v 407 (567)
T PLN02479 330 MSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVM 407 (567)
T ss_pred HHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEE
Confidence 8764 57899999999986433221100 0011135788888876 89999 578888864111499999
Q ss_pred -----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 559 -----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
.+||++ +++.|++.|.. .||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+
T Consensus 408 ~g~~~~~GY~~------~~~~t~~~~~~-------g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 408 RGNMVMKGYLK------NPKANEEAFAN-------GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred eccchhhhhhc------CcccccchhcC-------CceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 345655 77788888742 299999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecC-cceeeeec
Q 006121 634 RSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
||.|.+++|+...+.. +..+++|+
T Consensus 475 ~~~v~~~~v~~~~~~~~~~~~~~~v 499 (567)
T PLN02479 475 HPAVLEASVVARPDERWGESPCAFV 499 (567)
T ss_pred CcccceeeEEeccchhcCceeEEEE
Confidence 9999999988765443 34555554
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=458.56 Aligned_cols=444 Identities=16% Similarity=0.121 Sum_probs=348.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+.+++-+.......+++..+||.|..+++..+|..|+.. +++++.|||+.-|++||+++.+||...|++.|||.
T Consensus 85 ~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplY 164 (691)
T KOG1256|consen 85 VEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLY 164 (691)
T ss_pred hhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecc
Confidence 48899999998765322347889999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhc-----cCCCcEEEEcCCCCCCCC-----CCCCCCcchhh
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG-----AAPLKAIVLPAIGNDVGI-----PLREQDLSWKD 334 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~ 334 (660)
...+++.+.+|++++.+.+++++++. .+..+.+ ..+....++...+..... .......+|++
T Consensus 165 dTlg~ea~~~Ii~~~e~~iv~vd~~~--------k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e 236 (691)
T KOG1256|consen 165 DTLGAEAVHYIINHAEISIVFVDNAK--------KAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDE 236 (691)
T ss_pred cCCCHHHHHHHHHhcceeEEEEeCHH--------HHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHH
Confidence 99999999999999999999999641 2223322 233344444333322111 11123689999
Q ss_pred hhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh---hHh---cCCCCCCEEEEecCccc
Q 006121 335 FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAH---IDLKVGDVYCWPTNLGW 408 (660)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~---~~~~~~~~~l~~~~~~~ 408 (660)
+...+... ..... .+..|+|+|.|+|||||||.|||||+||+|++..+... ... .....+|++++++|++|
T Consensus 237 ~~~lG~~~--~~~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAH 313 (691)
T KOG1256|consen 237 FEELGKKN--QRKPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAH 313 (691)
T ss_pred HHhhcccc--cCCCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHH
Confidence 99887641 11122 46689999999999999999999999999998865431 111 11234699999999999
Q ss_pred cchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhc-----------------------C--
Q 006121 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT-----------------------N-- 463 (660)
Q Consensus 409 ~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~-----------------------~-- 463 (660)
.+....-...+..|+++.+..+ |+..+.+.|++.++|.+.++|.+|+.+.+. .
T Consensus 314 i~er~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~ 391 (691)
T KOG1256|consen 314 IFERVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEH 391 (691)
T ss_pred HHHHHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9998655566799999999874 667888889999999999999999887542 0
Q ss_pred -CCCCCCc-------------------cCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCc
Q 006121 464 -CLEGLDW-------------------TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523 (660)
Q Consensus 464 -~~~~~~l-------------------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 523 (660)
....... ..+|.+++|+.++++++...++..+ +++++++||+|||++..+...+.+. .
T Consensus 392 ~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-~ 469 (691)
T KOG1256|consen 392 RLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-V 469 (691)
T ss_pred HhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCC-C
Confidence 0000000 2688899999999999999998876 4899999999999955555444444 7
Q ss_pred ccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEec
Q 006121 524 FGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601 (660)
Q Consensus 524 ~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~ 601 (660)
.+++|.|+|+++++++| ++.+.-+.|.. ||||| ++..+.+ ||.+|++|++.|..+. |++|||+|+|++
T Consensus 470 lgsvG~p~p~~~vKL~dvpe~ny~a~~~~--GEIcirG~~Vf~G--YyK~p~~T~e~ideDG------WLhTGDiG~~~p 539 (691)
T KOG1256|consen 470 LGSVGPPVPGNEVKLVDVPEMNYDADGSK--GEICVRGPNVFMG--YYKDPEKTAEAIDEDG------WLHTGDIGEWDP 539 (691)
T ss_pred CCCcCCcccCceEEEechHHhCcCcCCCc--ceEEEecchhcee--ccCChHHHhhhhcccc------ccccccceeECC
Confidence 88999999999999999 55555566654 99999 5544443 3448999999998665 999999999999
Q ss_pred CceEEEEeccCCcccc-CceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeee
Q 006121 602 GGYIIVQGRADDTMNL-GGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFY 656 (660)
Q Consensus 602 dG~l~~~GR~dd~iki-~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~ 656 (660)
+|.|.++||+++.+|. .|+.|.|..||++..+.+.|.+.+|. .+....-|++-
T Consensus 540 ~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~--g~s~~~~Lvai 593 (691)
T KOG1256|consen 540 NGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVL--GDSLRSFLVAI 593 (691)
T ss_pred CccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEE--CCcchhcEEEE
Confidence 9999999999999995 79999999999999999999986553 33334445543
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-54 Score=475.10 Aligned_cols=434 Identities=18% Similarity=0.139 Sum_probs=335.7
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+.. +.+||.||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 7 a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~ 80 (511)
T PRK13391 7 AQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVN 80 (511)
T ss_pred HhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccc
Confidence 4789999999874221 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+.++.+++.++++++++++++++.... ..........+. ..+++...... .....+++.......
T Consensus 81 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~- 147 (511)
T PRK13391 81 SHLTPAEAAYIVDDSGARALITSAAKL------DVARALLKQCPGVRHRLVLDGDGEL------EGFVGYAEAVAGLPA- 147 (511)
T ss_pred cccCHHHHHHHHhccCCcEEEEchhhH------HHHHHHHhcCCCceEEEEecCCCCC------cccccHHHHhcCCCC-
Confidence 999999999999999999999987532 111122222222 11222111110 112223333221111
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEec--chhhH---HHHHHhhHhcCCCCCCEEEEecCccccchhhHHHH
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~s--h~~l~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 417 (660)
....+.++.++++|||||||.||||+++ |.++. +........+++.+++++++..|++|+.++...+.
T Consensus 148 -------~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 220 (511)
T PRK13391 148 -------TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVML 220 (511)
T ss_pred -------CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHH
Confidence 1112334679999999999999999964 66653 22333445677889999999999999988877788
Q ss_pred hhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhC
Q 006121 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (660)
Q Consensus 418 ~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 495 (660)
++..|+++++.+ ..++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.+++.+.+
T Consensus 221 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~ 299 (511)
T PRK13391 221 VIRLGGTVIVME-HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW 299 (511)
T ss_pred HHHcCceEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc
Confidence 999999999986 5688999999999999999999999998876432 2234678999999999999999999888766
Q ss_pred CCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCcccc
Q 006121 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 575 (660)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t 575 (660)
+ ..+++.||+||++.+............+++|+|+++ .++|+|+++++++.|+. |||++.....- .|+.+++.+
T Consensus 300 g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~--Gel~~~g~~~~--gy~~~~~~~ 373 (511)
T PRK13391 300 G-PIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEP--GTIWFEGGRPF--EYLNDPAKT 373 (511)
T ss_pred C-CceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCcce--EEcCChhHh
Confidence 4 789999999999875443322233455789999999 69999999999999997 99999322211 233367777
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~ 654 (660)
.+.|..+ .+||+|||+|++++||.++|+||.||++|++|++|++.|||++|.+||.|.+++|+...+.. +..++
T Consensus 374 ~~~~~~~-----~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~ 448 (511)
T PRK13391 374 AEARHPD-----GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVK 448 (511)
T ss_pred HHhhccC-----CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeE
Confidence 7766543 24999999999999999999999999999999999999999999999999999888665433 34455
Q ss_pred eec
Q 006121 655 FYF 657 (660)
Q Consensus 655 a~~ 657 (660)
+++
T Consensus 449 ~~~ 451 (511)
T PRK13391 449 AVV 451 (511)
T ss_pred EEE
Confidence 554
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=475.24 Aligned_cols=391 Identities=25% Similarity=0.267 Sum_probs=303.2
Q ss_pred cCCCCCCcEEEEE-ecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVW-REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~-~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+|+++||++|+++ ... ++||+||+++++++|..|++. +++|++|+|+++|++++++++|||+++|++++|
T Consensus 4 ~a~~~pd~~a~~~~~~~--------~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~ 75 (417)
T PF00501_consen 4 QAQRYPDRIALIDDEGR--------SLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVP 75 (417)
T ss_dssp HHHHSTTSEEEEETTTE--------EEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEE
T ss_pred HHhhCCCceEEEECCCE--------EEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccc
Confidence 4689999999999 555 999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCcccc--chhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhcc
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP--LYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 338 (660)
++|.++.+++.++++.+++++|++ .+ ..+... .+......... ....+...... ..+.+...
T Consensus 76 l~~~~~~~~~~~~l~~~~~~~ii~-~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 141 (417)
T PF00501_consen 76 LDPSLSEDELRHILRQSGPKVIIT-SE---AVDSEPLKKLKSIFKQEDPSSSIIILDRDDLP----------KKEALKSA 141 (417)
T ss_dssp EETTSSHHHHHHHHHHHTESEEEE-CH---HHSCHHHHHHHHHHTTSTTTEEEEEESHSSCT----------TCHHHHHH
T ss_pred cccccccccccccccccceeEEEE-ec---cccccccccchhhhcccccccccccccccccc----------cccccccc
Confidence 999999999999999999999997 10 000011 11122221111 22333211110 00011100
Q ss_pred CCCCCCCCCCCCcc-CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh--HhcCCCCCCEEEEecCccccchh-hH
Q 006121 339 VDYHPRPNYYSPVY-NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCWPTNLGWVMGP-VI 414 (660)
Q Consensus 339 ~~~~~~~~~~~~~~-~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~ 414 (660)
... . .. ... ..++++++++|||||||.||+|.++|+++.+.+.... ..++++ |++++.+|++|..++ ..
T Consensus 142 ~~~--~--~~-~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~ 214 (417)
T PF00501_consen 142 SLS--D--EP-QSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISA 214 (417)
T ss_dssp HHC--H--CS-HSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHH
T ss_pred ccc--c--cc-ccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccc
Confidence 000 0 00 000 0568999999999999999999999999988877653 223333 699999999999999 88
Q ss_pred HHHhhhcCcEEEEecCCC--ChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC----CCCCccCccEEEeecCCCChhhH
Q 006121 415 LFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDDD 488 (660)
Q Consensus 415 ~~~~l~~G~~lv~~~~~~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~----~~~~l~~lr~v~~gGe~l~~~~~ 488 (660)
++.++..|+++++++... ++..+++.|+++++|++.++|+++..|++.... ...++++||.+++||+++++++.
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~ 294 (417)
T PF00501_consen 215 LLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLL 294 (417)
T ss_dssp HHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHH
T ss_pred ccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhc
Confidence 999999999999998533 256789999999999999999999999874322 13478899999999999999999
Q ss_pred HHHHhhCCCCceeccccccccccccccCC-cCCCCcccccCcCCCCceEEEEcCC-CCcCCCCCCceeEEEE-e----cc
Q 006121 489 LWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-F----PL 561 (660)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~vld~~-~~~vp~G~~giGel~v-~----~~ 561 (660)
+++++.++..++++.||+||++..++... .......+++|+|+++++++|+|++ ++++|.|+. |||+| + .|
T Consensus 295 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~--Gei~i~~~~~~~g 372 (417)
T PF00501_consen 295 RRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEP--GEIVIRGPNVFSG 372 (417)
T ss_dssp HHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSE--EEEEEESTTSBSE
T ss_pred cccccccccccceecccccccceeeeccccccccccccccccccccccccccccccccccccccc--ccccccCCcccee
Confidence 99999887558999999999998665332 1222356789999999999999987 999999996 99999 3 34
Q ss_pred ccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccC
Q 006121 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618 (660)
Q Consensus 562 y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~ 618 (660)
|++ +++.|++.|.. ++||+|||+|++|+||+|+++||.||+||+|
T Consensus 373 y~~------~~~~~~~~~~~------~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 373 YYN------DPELTAEAFID------DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp ETT------BHHHHHHHEET------TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eec------ccccccccccc------ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 444 56788888874 2399999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=465.76 Aligned_cols=371 Identities=12% Similarity=0.048 Sum_probs=295.4
Q ss_pred eecHHHHHHHHHHHHHHHHhc-c-CCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEe
Q 006121 209 LMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286 (660)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v-~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~ 286 (660)
-+.|+||.++++++|++|++. + ++|++|+++++|+++++++++||+++|++++|++|.++.+++++++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 478999999999999999999 6 67999999999999999999999999999999999999999999999999999998
Q ss_pred ecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCC
Q 006121 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366 (660)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 366 (660)
++..... . . ... . . ......++++++++||||
T Consensus 99 ~~~~~~~---------~----------~------------------~~~-----~--~----~~~~~~~~~~~~i~~TSG 130 (452)
T PRK07445 99 LDQLKLS---------H----------P------------------PPL-----P--S----QGILPNLETGWIMIPTGG 130 (452)
T ss_pred cCccccc---------c----------C------------------CCC-----C--c----cccCCCCCCcEEEEeCCC
Confidence 7642100 0 0 000 0 0 001134689999999999
Q ss_pred CCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCC
Q 006121 367 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446 (660)
Q Consensus 367 STG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~v 446 (660)
|||.||||+++|+++...+.+....+++.+ ++.++..|++|.+++..++.+|+.|+++++.+.. ..........++++
T Consensus 131 TTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~ 208 (452)
T PRK07445 131 SSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSD 208 (452)
T ss_pred CCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCc
Confidence 999999999999999888877776677755 4678889999999998888999999999998631 12222344457899
Q ss_pred eEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCC-CCccc
Q 006121 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFG 525 (660)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~ 525 (660)
|+++++|++++.|++.. ...+++||.+++||+++++++.+.+... +++++|.||+||++..+....+.. .....
T Consensus 209 t~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 283 (452)
T PRK07445 209 FFLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNN 283 (452)
T ss_pred eEEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCC
Confidence 99999999999998632 2347899999999999999988877643 578999999999976443322211 12346
Q ss_pred ccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCce
Q 006121 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604 (660)
Q Consensus 526 ~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~ 604 (660)
++|+|+++++++|+ .|+. |||+| ++....+ |++. ++ ...+||+|||+|++|+||+
T Consensus 284 ~~G~~~p~~~v~i~--------~g~~--Gel~v~g~~~~~g---Y~~~----------~~-~~~g~~~TGDl~~~d~dG~ 339 (452)
T PRK07445 284 SSGQVLPHAQITIP--------ANQT--GNITIQAQSLALG---YYPQ----------IL-DSQGIFETDDLGYLDAQGY 339 (452)
T ss_pred cCCccCCCCeEEEc--------CCCc--ceEEEeCCccchh---hcCC----------cc-CCCCEEECCCEEEEcCCCC
Confidence 79999999999998 4554 99999 4433321 1121 11 1235999999999999999
Q ss_pred EEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 605 IIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 605 l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|+...+.. +..+++++.
T Consensus 340 l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv 394 (452)
T PRK07445 340 LHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYV 394 (452)
T ss_pred EEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEE
Confidence 999999999999999999999999999999999999988766543 456777653
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=473.60 Aligned_cols=437 Identities=17% Similarity=0.156 Sum_probs=328.7
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++.+|+++|+.+.+. .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 99 (545)
T PRK08162 28 AEVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLN 99 (545)
T ss_pred HHHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccc
Confidence 368999999998776 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
|.++.+++.++++++++++++++.... ..........+.. .+++.............+..+++.+......
T Consensus 100 ~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 171 (545)
T PRK08162 100 TRLDAASIAFMLRHGEAKVLIVDTEFA------EVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP-- 171 (545)
T ss_pred cccChHHHHHHHHhCCCeEEEEccchh------hHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCc--
Confidence 999999999999999999999987542 1122211122221 3333222111000011123345555443211
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
..........+++++|+|||||||.||||+++|+++..........+.+..++++++..|+.|..+....+...+.|+
T Consensus 172 --~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g 249 (545)
T PRK08162 172 --DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAG 249 (545)
T ss_pred --cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHcc
Confidence 011111223467999999999999999999999998766655556677888999999999999888754444445566
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
+.++.. ..++..+++.|+++++|++.++|++++.|++........+.+.+.++++|+.++.++.+++.+. ++++++.
T Consensus 250 ~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 326 (545)
T PRK08162 250 TNVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHV 326 (545)
T ss_pred EEEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeec
Confidence 666554 4789999999999999999999999999997654333345567778899999999988887754 5889999
Q ss_pred ccccccccccccCCcC------C----CCcccccCcCCC-CceEEEEc-CCCCcCCCC-CCceeEEEE-e----ccccCC
Q 006121 504 CGGTELSSAYIQGSLL------Q----PQAFGAFSTATM-TAGLVILD-ECGVPYPDD-QPCVGEVGL-F----PLYLGA 565 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~------~----~~~~~~iG~p~~-~~~~~vld-~~~~~vp~G-~~giGel~v-~----~~y~~~ 565 (660)
||+||+++.+...... . .....+.|.+.+ +..++|+| ++++++|.+ +. +|||+| + .||++
T Consensus 327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~-~Gel~v~g~~~~~gY~~- 404 (545)
T PRK08162 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGET-IGEIMFRGNIVMKGYLK- 404 (545)
T ss_pred ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCc-eeEEEEecCcchhhhcC-
Confidence 9999986433322110 0 111245677665 34688999 478888863 32 599999 3 35554
Q ss_pred cccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEE
Q 006121 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAW 645 (660)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~ 645 (660)
+++.+..+|.. +||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|+..
T Consensus 405 -----~~~~~~~~~~~-------g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~ 472 (545)
T PRK08162 405 -----NPKATEEAFAG-------GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAK 472 (545)
T ss_pred -----ChhhhHHHhhC-------CCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEee
Confidence 67777777742 299999999999999999999999999999999999999999999999999988876
Q ss_pred eecC-cceeeeec
Q 006121 646 LYFH-KLELIFYF 657 (660)
Q Consensus 646 ~~~~-~~~l~a~~ 657 (660)
.+.. +..+.+|+
T Consensus 473 ~~~~~~~~~~~~v 485 (545)
T PRK08162 473 PDPKWGEVPCAFV 485 (545)
T ss_pred eccccCceEEEEE
Confidence 6443 34556654
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=459.31 Aligned_cols=393 Identities=20% Similarity=0.192 Sum_probs=326.9
Q ss_pred cHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeec
Q 006121 211 TYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (660)
Q Consensus 211 TY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~ 288 (660)
||.||.++++++|++|.+ . +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999999 7 99999999999999999999999999999999999999999999999999999999987
Q ss_pred ceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCC
Q 006121 289 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368 (660)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGST 368 (660)
........ .......+.. .+......... .........++++++++||||||
T Consensus 81 ~~~~~~~~----------~~~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTt 132 (408)
T TIGR01733 81 ALASRLAG----------LVLPIILVDP--------------LELAALDDAPA----PPPPDAPSGPDDLAYVIYTSGST 132 (408)
T ss_pred chhhhccc----------cCCceEEech--------------hhhhhcccccc----cccccCCCCCCCcEEEEEcCCCC
Confidence 64321111 1111111110 00000000000 00011113568999999999999
Q ss_pred CCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCC--hhhHHHHHHHcCC
Q 006121 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGV 446 (660)
Q Consensus 369 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~--~~~l~~~i~~~~v 446 (660)
|.||+|.++|+++.+........+.+.++++++...|+.|..+++.++.++..|+++++.++... +..+.+.++++++
T Consensus 133 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
T TIGR01733 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPV 212 (408)
T ss_pred CCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCc
Confidence 99999999999999988888888899999999999999999999999999999999999875443 6789999999999
Q ss_pred eEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCc--CCCC--
Q 006121 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQPQ-- 522 (660)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~~~-- 522 (660)
|.+.++|++++.|.+... ..+++||.+++||+++++++.+++.+.++++.+++.||+||++.++..... ....
T Consensus 213 t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~ 289 (408)
T TIGR01733 213 TVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRE 289 (408)
T ss_pred eEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCc
Confidence 999999999999998653 457899999999999999999999998877889999999999875532211 1111
Q ss_pred cccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccccccccccccCC--CceeEeeCc
Q 006121 523 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGD 595 (660)
Q Consensus 523 ~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f~~~p~~~--~~r~y~TGD 595 (660)
...++|+|+++++++|+|+++++++.|+. |||+| + .||++ +++.|.+.|..+++.. +.+||+|||
T Consensus 290 ~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~~~~~~~~~~~~~~~~~~~~TGD 361 (408)
T TIGR01733 290 SPVPIGRPLANTRLYVLDDDLRPVPVGVV--GELYIGGPGVARGYLN------RPELTAERFVPDPFAGGDGARLYRTGD 361 (408)
T ss_pred cccccCcccCCceEEEECCCCCCCCCCCc--eEEEecCccccccccC------ChhhhhcceeeCCCCCCCCceEEECCc
Confidence 26789999999999999999999999986 99999 3 45554 6778888888877643 445999999
Q ss_pred eEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEE
Q 006121 596 IIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHI 642 (660)
Q Consensus 596 l~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~v 642 (660)
+|++|+||++++.||.||+||++|++|+|.|||++|..||.|++|+|
T Consensus 362 l~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 362 LVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred eEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 99999999999999999999999999999999999999999999864
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=478.20 Aligned_cols=427 Identities=16% Similarity=0.149 Sum_probs=322.7
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
+.+|+.+ ++..+. +..+.+||.||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+|+
T Consensus 32 ~~~~~~~-~~~~~~----~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~ 106 (579)
T PRK09192 32 LGEAGMN-FYDRRG----QLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPL 106 (579)
T ss_pred ccCCceE-EEecCC----CEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccC
Confidence 4566544 443222 2345899999999999999999999 999999999999999999999999999999999987
Q ss_pred CCC-------HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhcc
Q 006121 266 SFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (660)
Q Consensus 266 ~~p-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 338 (660)
..+ .+++.+++++++++++++++... +.+........ ... ..++.++...
T Consensus 107 ~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~------~~~~~~~~~~~-~~~----------------~~~~~~~~~~ 163 (579)
T PRK09192 107 PMGFGGRESYIAQLRGMLASAQPAAIITPDELL------PWVNEATHGNP-LLH----------------VLSHAWFKAL 163 (579)
T ss_pred CcccccchHHHHHHHHHHHhcCCCEEEeChHHH------HHHHHhhcccc-ccc----------------eeehhhhccc
Confidence 543 68999999999999999987532 11111111110 000 1122332221
Q ss_pred CCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH-hcCCCCCCEEEEecCccccchhhH-HH
Q 006121 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LF 416 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~-~~ 416 (660)
... ........+++++||+|||||||.||||+++|+++...+..... .+++.++|+++++.|+.|+.++.. ++
T Consensus 164 ~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 238 (579)
T PRK09192 164 PEA-----DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLL 238 (579)
T ss_pred CCC-----ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHH
Confidence 111 11112345789999999999999999999999999888777766 788999999999999999999864 66
Q ss_pred HhhhcCcEEEEecC-C--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC---CCCCCccCccEEEeecCCCChhhHHH
Q 006121 417 SSFLNGATLALYQG-S--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDDLW 490 (660)
Q Consensus 417 ~~l~~G~~lv~~~~-~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~lr~v~~gGe~l~~~~~~~ 490 (660)
.++..|+++++.+. . .++..+++.+.++++|++..+|.++..+..... ....+++++|.+++||+++++.+.+.
T Consensus 239 ~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~ 318 (579)
T PRK09192 239 TPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQ 318 (579)
T ss_pred HHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHH
Confidence 78899999987752 1 257889999999999988776666655543221 22356889999999999999999888
Q ss_pred HHhhCCC-----CceeccccccccccccccCCcCCC---------------------------CcccccCcCCCCceEEE
Q 006121 491 LSSKAWY-----NAIIESCGGTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGLVI 538 (660)
Q Consensus 491 ~~~~~~~-----~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~~v 538 (660)
+.+.++. ..+++.||+||++..++....... ....++|+|++|++++|
T Consensus 319 ~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i 398 (579)
T PRK09192 319 FAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEI 398 (579)
T ss_pred HHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEE
Confidence 8776531 358999999999864433221100 11247999999999999
Q ss_pred EcCCCCcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCcccc
Q 006121 539 LDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 617 (660)
Q Consensus 539 ld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki 617 (660)
+|+++++++.|+. |||++ +++... +|++.+.+.+.|..+ .||+|||+|++ +||+++|+||.||+||+
T Consensus 399 ~d~~~~~~~~g~~--Gel~i~g~~~~~---gY~~~~~~~~~~~~d------gw~~TGDlg~~-~~G~l~~~GR~dd~i~~ 466 (579)
T PRK09192 399 RNEAGMPLPERVV--GHICVRGPSLMS---GYFRDEESQDVLAAD------GWLDTGDLGYL-LDGYLYITGRAKDLIII 466 (579)
T ss_pred ECCCCCCCCCCCE--EEEEecCCchhh---hhcCCccccccccCC------ceeeccceeeE-ECCEEEEEeccccEEEE
Confidence 9999999999985 99999 432222 222335566555532 39999999999 99999999999999999
Q ss_pred CceeecchHHHHhhcCCCCce--eeEEEEEeecCcceeeeecc
Q 006121 618 GGIKALLLPLTFLSSPRSSFK--CLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 618 ~G~rv~~~eIE~~L~~~~~V~--~a~vv~~~~~~~~~l~a~~~ 658 (660)
+|+||+|.|||++|.+||+|. +++|+...+..+..++++++
T Consensus 467 ~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~ 509 (579)
T PRK09192 467 NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQ 509 (579)
T ss_pred CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEE
Confidence 999999999999999999998 77777766655556666654
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=469.17 Aligned_cols=416 Identities=18% Similarity=0.106 Sum_probs=326.6
Q ss_pred eecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEee
Q 006121 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287 (660)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~ 287 (660)
.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cceeecCccccchhhHhccCC--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecC
Q 006121 288 DFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365 (660)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 365 (660)
+.... .........+ ...+.+.... ......|++....... ......++.++++|||
T Consensus 91 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TS 149 (502)
T PRK08276 91 AALAD------TAAELAAELPAGVPLLLVVAGP-------VPGFRSYEEALAAQPD--------TPIADETAGADMLYSS 149 (502)
T ss_pred cchhh------HHHHHhhhccccccEEEEeCCC-------CCccccHHHHHhcCCC--------CCCCCCCcceEEEECC
Confidence 75431 1112222111 1222221110 0122334444332111 1122446789999999
Q ss_pred CCCCCcceEEecchhhHHHH------HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHH
Q 006121 366 GTTGEPKAIPWTQLSSIRCT------AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439 (660)
Q Consensus 366 GSTG~PKgV~~sh~~l~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~ 439 (660)
||||.||||+++|+++.... ......+....++++++..|+.|..++...+.++..|+++++.+ ..++..+++
T Consensus 150 GtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 228 (502)
T PRK08276 150 GTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME-KFDAEEALA 228 (502)
T ss_pred CCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC-CCCHHHHHH
Confidence 99999999999988764322 22222233357889999999999988877778999999999876 478899999
Q ss_pred HHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCC
Q 006121 440 FVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS 517 (660)
Q Consensus 440 ~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 517 (660)
.++++++|++.++|+++..|++.... ...+++++|.+++||++++.++.+++.+.++ ..+++.||+||++.++....
T Consensus 229 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~~~~ 307 (502)
T PRK08276 229 LIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTVITS 307 (502)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeEecC
Confidence 99999999999999999999876432 3456889999999999999999999888764 67999999999987444333
Q ss_pred cCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe-ccccCCcccccCcccccccccccccCCCceeEeeCce
Q 006121 518 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 596 (660)
Q Consensus 518 ~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~-~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl 596 (660)
.......+++|+|+ ++.++|+|+++++++.|+. |||++. +.... .++.+++.+.+.|.++ +||+|||+
T Consensus 308 ~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~--gy~~~~~~~~~~~~~~------~~~~TGD~ 376 (502)
T PRK08276 308 EDWLAHPGSVGKAV-LGEVRILDEDGNELPPGEI--GTVYFEMDGYPF--EYHNDPEKTAAARNPH------GWVTVGDV 376 (502)
T ss_pred ccccccCCCcceec-ccEEEEECCCCCCCcCCCc--eEEEEECCCccc--hhcCCHHHHHHHhcCC------Cceeecce
Confidence 22234457899999 8899999999999999986 999994 33221 1223666777777643 39999999
Q ss_pred EEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 597 IKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 597 ~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
|++++||.+++.||.|++||++|++|++.|||.+|.++|+|.+++|+...+.. ++.+.+|++
T Consensus 377 ~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 439 (502)
T PRK08276 377 GYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQ 439 (502)
T ss_pred EEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEE
Confidence 99999999999999999999999999999999999999999999888766544 456777654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=514.47 Aligned_cols=432 Identities=17% Similarity=0.168 Sum_probs=328.6
Q ss_pred CCC-CCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKE-DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~-pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
+++ |+++|+.+.+. +++||+||+++++++|++|++.+++||+|+++++|++++++++|||+++|++++|+||
T Consensus 642 ~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 714 (1140)
T PRK06814 642 KIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINF 714 (1140)
T ss_pred HHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCC
Confidence 455 46788876332 2899999999999999999633999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
.++.+++.+++++++++++++++......+. ....+..+ ..++.++...... .....+.+.......
T Consensus 715 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~-- 783 (1140)
T PRK06814 715 SAGIANILSACKAAQVKTVLTSRAFIEKARL----GPLIEALEFGIRIIYLEDVRAQI-----GLADKIKGLLAGRFP-- 783 (1140)
T ss_pred CCCHHHHHHHHHHcCCCEEEecHHHHhhhcc----hhHHHHhccCceEEEehHhhccC-----ChHHHHHHHhhccCC--
Confidence 9999999999999999999998754321111 11111111 1222222110000 000011111111110
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcC
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G 422 (660)
........++|++|++|||||||+||||+++|+++.+.+......++++++|++++..|+.|..++ +.++.++..|
T Consensus 784 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 860 (1140)
T PRK06814 784 ---LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSG 860 (1140)
T ss_pred ---ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcC
Confidence 001113467999999999999999999999999999888888888899999999999999999888 6788999999
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
+++++.+...+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||++++++.+++.+.+ +++++|
T Consensus 861 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~ 937 (1140)
T PRK06814 861 VKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILE 937 (1140)
T ss_pred CEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEe
Confidence 99999875556678899999999999999999999988653 345678999999999999999999888776 478999
Q ss_pred cccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-eccccCCcccccCcccccccccc
Q 006121 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG 581 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~ 581 (660)
.||+||++..+..... .....+++|+|++++++++.+..+ .|+. |||++ +++... +|++++. ...+..
T Consensus 938 ~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~~----~~~~--Gel~v~g~~~~~---gY~~~~~-~~~~~~ 1006 (1140)
T PRK06814 938 GYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVPG----IDEG--GRLFVRGPNVML---GYLRAEN-PGVLEP 1006 (1140)
T ss_pred ccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecCC----CCCc--eEEEEeCCCcch---hhcCCCC-CCcccc
Confidence 9999999875443322 234567899999999999987543 3565 99999 333222 2223221 111211
Q ss_pred cccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 582 ~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
.+++||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+|++|.+++|+...+.. ++.++++.
T Consensus 1007 ----~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~ 1079 (1140)
T PRK06814 1007 ----PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLT 1079 (1140)
T ss_pred ----CCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEE
Confidence 1345999999999999999999999999999999999999999999999999999888765543 34555554
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=455.63 Aligned_cols=358 Identities=11% Similarity=0.080 Sum_probs=303.1
Q ss_pred EEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHH
Q 006121 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (660)
Q Consensus 194 Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l 272 (660)
++++.++ ++||+||.++++++|+.|. . +++|++|+|+++|++++++++||++++|++++||++..+.+++
T Consensus 1 ~~~~~~~--------~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~ 71 (414)
T PRK08308 1 MLIVNDE--------EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAA 71 (414)
T ss_pred CeEecCc--------eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHH
Confidence 3566666 9999999999999999985 6 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCcc
Q 006121 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (660)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
..++++++++++++++... .... ...
T Consensus 72 ~~~~~~~~~~~~i~~~~~~---------------------------------------~~~~---------------~~~ 97 (414)
T PRK08308 72 IRMAKRAGCHGLLYGESDF---------------------------------------TKLE---------------AVN 97 (414)
T ss_pred HHHHHhCCCCEEEecCccc---------------------------------------cccc---------------CCC
Confidence 9999999999999875210 0000 001
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEecCC
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGS 431 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~ 431 (660)
..+++++|++|||||||+||||+++|+++.+.+.+....+.+..+++++...|+.|++++ ..++.+|..|+++++.+ .
T Consensus 98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~ 176 (414)
T PRK08308 98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-N 176 (414)
T ss_pred CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-C
Confidence 245789999999999999999999999999888888788888999999999999999887 56889999999999986 4
Q ss_pred CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccccccccc
Q 006121 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511 (660)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 511 (660)
.++..+++.++++++|++.++|+++..|.+.... ..+++.+++||+++++++.+++++. ..+++|.||+||++.
T Consensus 177 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~ 250 (414)
T PRK08308 177 KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGC 250 (414)
T ss_pred CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCC
Confidence 6788999999999999999999999999875421 1368899999999999998888876 368999999999985
Q ss_pred ccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeE
Q 006121 512 AYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR 591 (660)
Q Consensus 512 ~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y 591 (660)
+... . .....+++|+|++++++++.++ .|.+ ||+++.. +.+||
T Consensus 251 ~~~~-~--~~~~~~~~G~p~~~~~~~~~~~------~~~~--gel~v~~--------------------------~~~~~ 293 (414)
T PRK08308 251 VSIC-P--DMKSHLDLGNPLPHVSVSAGSD------ENAP--EEIVVKM--------------------------GDKEI 293 (414)
T ss_pred eeec-C--CCCCCCccCccCCCeEEEEecC------CCCC--ceEEEEc--------------------------CCceE
Confidence 4321 1 1234568999999999999864 3555 9999832 12399
Q ss_pred eeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 592 ~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
+|||+|++++||+++|+||.||+||++|+||+|.|||++|.++|+|.+|+|+...+.. +..+++++.
T Consensus 294 ~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~ 361 (414)
T PRK08308 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVI 361 (414)
T ss_pred ECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999999999888765543 345666543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=461.55 Aligned_cols=382 Identities=14% Similarity=0.134 Sum_probs=311.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. .+||+||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 13 a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~ 84 (458)
T PRK09029 13 AQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLN 84 (458)
T ss_pred HHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecC
Confidence 368999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
+..+.+++..++++++++++++++.... ...+ . ...+.. ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~----~--------------------~~~~~~-----~~--- 125 (458)
T PRK09029 85 PQLPQPLLEELLPSLTLDFALVLEGENT-------FSAL----T--------------------SLHLQL-----VE--- 125 (458)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCcccc-------hhhc----c--------------------cccccc-----cc---
Confidence 9999999999999999999999875310 0000 0 000000 00
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcE
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (660)
........++++++++|||||||+||||+++|++++..+......+++.++++++...|+.|.+++..++.+|+.|++
T Consensus 126 --~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~ 203 (458)
T PRK09029 126 --GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGAT 203 (458)
T ss_pred --ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCce
Confidence 011123457899999999999999999999999999988877778889999999999999999998777788999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+++.+. ..+++.+ .++|.+..+|+++..|+..... ..++|.+++||++++..+.+++... +.++++.|
T Consensus 204 v~~~~~----~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~Y 271 (458)
T PRK09029 204 LVVRDK----QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGY 271 (458)
T ss_pred EEeCCh----HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccc
Confidence 998763 4566776 3899999999999998876432 3579999999999999998888754 58899999
Q ss_pred cccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccccc
Q 006121 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (660)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f 579 (660)
|+||++....... .....++|+|+++++++|+| |||+| ..||++ +++.+..
T Consensus 272 G~tE~~~~~~~~~---~~~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~gY~~------~~~~~~~-- 327 (458)
T PRK09029 272 GLTEMASTVCAKR---ADGLAGVGSPLPGREVKLVD-------------GEIWLRGASLALGYWR------QGQLVPL-- 327 (458)
T ss_pred cccccCcceeccC---CCCCCCCCCCCCCCEEEEeC-------------CEEEEecCceeeeeec------Ccccccc--
Confidence 9999986433221 12234699999999999986 78888 345554 4443321
Q ss_pred cccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 580 ~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
..+.+||+|||+|+++ ||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+++++.
T Consensus 328 -----~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~ 401 (458)
T PRK09029 328 -----VNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVE 401 (458)
T ss_pred -----ccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEE
Confidence 1234599999999999 999999999999999999999999999999999999999998876554 455666653
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=476.41 Aligned_cols=432 Identities=15% Similarity=0.135 Sum_probs=316.9
Q ss_pred CCCCCCcEEEEEecCCCC-CCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCD-ESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~-~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+..+|+++|+++.+..++ .+..+++||+||.++++++|++|.+.-++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~ 90 (578)
T PRK05850 11 ASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLS 90 (578)
T ss_pred HhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccHHHHHHHHHHcCceEEecC
Confidence 368999999997542100 1123589999999999999999998833799999999999999999999999999999999
Q ss_pred C---CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccC---CC-cEEEEcCCCCCCCCCCCCCCcchhhhhc
Q 006121 265 D---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL-KAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (660)
Q Consensus 265 p---~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (660)
+ ..+.+++.++++++++++|++++.... .+....... .. .++.+.. ..+ ..
T Consensus 91 ~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~ 148 (578)
T PRK05850 91 VPQGGAHDERVSAVLRDTSPSVVLTTSAVVD------DVTEYVAPQPGQSAPPVIEVDL-------------LDL---DS 148 (578)
T ss_pred CCCccchHHHHHHHHHhcCCCEEEEcHHHHH------HHHHHHhhcccccccceEeecc-------------ccc---cc
Confidence 7 457899999999999999999875321 111111100 00 0111100 000 00
Q ss_pred cCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh-cC-----CCCCCEEEEecCccccch
Q 006121 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-ID-----LKVGDVYCWPTNLGWVMG 411 (660)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~ 411 (660)
.. ........+++++||+|||||||+||||+++|+++.+.+.+.... +. ...++++++..|+.|+.+
T Consensus 149 --~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 221 (578)
T PRK05850 149 --PR-----GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221 (578)
T ss_pred --CC-----ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCch
Confidence 00 001123456899999999999999999999999998776554332 22 356889999999999999
Q ss_pred h-hHHHHhhhcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHH-HHHHhcC---CCCCCCccCccEEEeecCCC
Q 006121 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLV-KAWRNTN---CLEGLDWTKIRSFASTGETS 483 (660)
Q Consensus 412 ~-~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l-~~l~~~~---~~~~~~l~~lr~v~~gGe~l 483 (660)
+ ..++.+++.|+++++.+.. .++..++++++++++++. .+|+.+ ..+.... .....+++++|.+++||+++
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~ 300 (578)
T PRK05850 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERV 300 (578)
T ss_pred hHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCC
Confidence 7 4588999999999998642 268899999999999865 555544 4343211 11234678999999999999
Q ss_pred ChhhHHHHHhhCC-----CCceeccccccccccccccCCcCCC------------------------CcccccCcCCCCc
Q 006121 484 NVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP------------------------QAFGAFSTATMTA 534 (660)
Q Consensus 484 ~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~------------------------~~~~~iG~p~~~~ 534 (660)
++++.+++.+.++ +..+++.||+||++..+.......+ ....++|+|. +.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~ 379 (578)
T PRK05850 301 HPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SP 379 (578)
T ss_pred CHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CC
Confidence 9999888877653 3468999999998753332211100 0112456664 67
Q ss_pred eEEEEc-CCCCcCCCCCCceeEEEE-ec----cccCCcccccCcccccccccc---cccC--CCceeEeeCceEEEecCc
Q 006121 535 GLVILD-ECGVPYPDDQPCVGEVGL-FP----LYLGASDRLLNADHEEVYFRG---MPMY--KGMCLRRHGDIIKRTVGG 603 (660)
Q Consensus 535 ~~~vld-~~~~~vp~G~~giGel~v-~~----~y~~~~~~~~~~~~t~~~f~~---~p~~--~~~r~y~TGDl~~~~~dG 603 (660)
+++|+| ++++++|.|+. |||+| ++ ||++ +++.|++.|.. +|.. ...+||+|||+|+++ ||
T Consensus 380 ~~~ivd~~~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G 450 (578)
T PRK05850 380 TVRIVDPDTCIECPAGTV--GEIWVHGDNVAAGYWQ------KPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EG 450 (578)
T ss_pred EEEEEcCCCCcCCCCCCE--EEEEEecCcccccccC------ChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CC
Confidence 899999 45889999996 99999 43 5554 78889888853 2221 124599999999998 99
Q ss_pred eEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeecc
Q 006121 604 YIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 604 ~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~~ 658 (660)
+|+|+||+||+||++|+||+|.|||++|.+||.+. ++|+...+..+..+++|+.
T Consensus 451 ~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~~~~~~~a~v~ 504 (578)
T PRK05850 451 ELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDDGTEKLVAIIE 504 (578)
T ss_pred EEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCCCceEEEEEEE
Confidence 99999999999999999999999999999999976 4455544545567888764
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=446.69 Aligned_cols=381 Identities=18% Similarity=0.188 Sum_probs=305.9
Q ss_pred cHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecc
Q 006121 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 211 TY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
||+||.++++++|+.|.+. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 8999999999999999999 999999999999999999999999999999999999999999999999999999999875
Q ss_pred eeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCC
Q 006121 290 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369 (660)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG 369 (660)
.... .+ . ...+..+...... ..........+++++++|||||||
T Consensus 81 ~~~~--~~--------------~----------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG 124 (436)
T TIGR01923 81 LEEK--DF--------------Q----------------ADSLDRIEAAGRY----ETSLSASFNMDQIATLMFTSGTTG 124 (436)
T ss_pred cccc--ce--------------e----------------ecchHhhhhcccc----cccccccCCcCceEEEEeCCCCCC
Confidence 3100 00 0 0011111110000 001112345688999999999999
Q ss_pred CcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEE
Q 006121 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 449 (660)
Q Consensus 370 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l 449 (660)
.||+|+++|+++...+.+....++++++|++++..|+.|..++..++.++..|+++++.+.. ..+++.|+++++|++
T Consensus 125 ~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~ 201 (436)
T TIGR01923 125 KPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHI 201 (436)
T ss_pred CCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEE
Confidence 99999999999998888888889999999999999999998888889999999999998632 389999999999999
Q ss_pred eecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCc
Q 006121 450 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529 (660)
Q Consensus 450 ~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~ 529 (660)
.++|+++..|++.... .+++|.+++||+++++++.+++... ++.++|.||+||++..++...........++|+
T Consensus 202 ~~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 275 (436)
T TIGR01923 202 SLVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARPDVGR 275 (436)
T ss_pred EeHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccccCCCc
Confidence 9999999999876432 2689999999999999998887653 688999999999987544433322222235899
Q ss_pred CCCCceEEE-EcCCCCcCCCCCCceeEEEE-ec----cccCCcccccCcccccccccccccCCCceeEeeCceEEEecCc
Q 006121 530 ATMTAGLVI-LDECGVPYPDDQPCVGEVGL-FP----LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 603 (660)
Q Consensus 530 p~~~~~~~v-ld~~~~~vp~G~~giGel~v-~~----~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG 603 (660)
|+++++++| .|+.+ + .|||++ ++ ||++ +++.+...| +.+||+|||+|++++||
T Consensus 276 ~~~~~~~~i~~~~~~------~--~Gel~v~~~~~~~gy~~------~~~~~~~~~-------~~~~~~TGD~~~~~~dg 334 (436)
T TIGR01923 276 PLAGREIKIKVDNKE------G--HGEIMVKGANLMKGYLY------QGELTPAFE-------QQGWFNTGDIGELDGEG 334 (436)
T ss_pred cCCCcEEEEEeCCCC------C--ceEEEEECCccchhhCC------Chhhhhhhh-------cCCCeeccceEEEcCCC
Confidence 999999999 44332 4 399999 33 3433 333333332 23499999999999999
Q ss_pred eEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 604 YIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 604 ~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
+++++||.||+||++|++|++.|||.+|.++|.|++++|+...+.. +..+++++
T Consensus 335 ~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 389 (436)
T TIGR01923 335 FLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYI 389 (436)
T ss_pred CEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEE
Confidence 9999999999999999999999999999999999999888765443 34455554
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=459.40 Aligned_cols=412 Identities=17% Similarity=0.099 Sum_probs=317.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+...|+.+|+...+. ...+||.||+++++++|++|.+. +++||+|+|+++|+++++++++||+++|++++|++
T Consensus 12 ~~~~~~~~~~~~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~ 85 (545)
T PRK07768 12 ARTSPRGMVTGEPDA------PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLH 85 (545)
T ss_pred hhCCCcceEEecCCC------ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccC
Confidence 357789998865443 24899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhc
Q 006121 265 DSFAAREI-------ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (660)
Q Consensus 265 p~~p~~~l-------~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (660)
+..+.+++ .++++.++++.+++++......+ .+ .... ...+.++++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~-~~~~------------------~~~~~~~~l~~ 140 (545)
T PRK07768 86 QPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAP------VL-EEKG------------------IRVLTVADLLA 140 (545)
T ss_pred CCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhh------hh-cccC------------------Cceeehhhhcc
Confidence 99887655 45677789999999875321110 00 0000 11233444443
Q ss_pred cCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCC-CEEEEecCccccchhhH-H
Q 006121 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG-DVYCWPTNLGWVMGPVI-L 415 (660)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~-~ 415 (660)
.... ......++++++++|||||||+||||+++|+++.+.+......+++.++ |++++..|++|+.++.. +
T Consensus 141 ~~~~-------~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 213 (545)
T PRK07768 141 ADPI-------DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFL 213 (545)
T ss_pred cCCC-------CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHH
Confidence 2111 1223467999999999999999999999999999888877777888876 89999999999999854 6
Q ss_pred HHhhhcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcC----CCCCCCccCccEEEeecCCCChhhH
Q 006121 416 FSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CLEGLDWTKIRSFASTGETSNVDDD 488 (660)
Q Consensus 416 ~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----~~~~~~l~~lr~v~~gGe~l~~~~~ 488 (660)
+.++..|+++++.+.. .++..+.++++++++|++..+|.++..|.+.. .....+++++|.+++||+++++...
T Consensus 214 ~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~ 293 (545)
T PRK07768 214 TVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADV 293 (545)
T ss_pred HHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHH
Confidence 6789999999988642 26778899999999999988888877665421 1123567899999999999999998
Q ss_pred HHHHhh---CC--CCceeccccccccccccccCCcCC-------------------------CCcccccCcCCCCceEEE
Q 006121 489 LWLSSK---AW--YNAIIESCGGTELSSAYIQGSLLQ-------------------------PQAFGAFSTATMTAGLVI 538 (660)
Q Consensus 489 ~~~~~~---~~--~~~l~n~YG~TE~~~~~~~~~~~~-------------------------~~~~~~iG~p~~~~~~~v 538 (660)
+++.+. ++ ...+++.||+||++..++...... ....+++|+|+++++++|
T Consensus 294 ~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i 373 (545)
T PRK07768 294 EDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRV 373 (545)
T ss_pred HHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEE
Confidence 887763 22 235999999999986443221110 113457999999999999
Q ss_pred EcCCCCcCCCCCCceeEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCcccc
Q 006121 539 LDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 617 (660)
Q Consensus 539 ld~~~~~vp~G~~giGel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki 617 (660)
+|+++++++.|+. |||++ ++.... +|++++.+.. ... +..||+|||+|++++||+++|+||.||+||+
T Consensus 374 ~~~~~~~~~~g~~--Gel~v~~~~~~~---gy~~~~~~~~----~~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~ 442 (545)
T PRK07768 374 VDEDGQVLPPRGV--GVIELRGESVTP---GYLTMDGFIP----AQD--ADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM 442 (545)
T ss_pred ECCCCCCCCCCCE--EEEEEccCcccc---cccCCCCCcc----ccc--CCCeeeccceEEEecCCEEEEEccccceEEE
Confidence 9999999999996 99999 322211 1223222221 111 2349999999999999999999999999999
Q ss_pred CceeecchHHHHhhcCCCCceeeEEEEEe
Q 006121 618 GGIKALLLPLTFLSSPRSSFKCLHIYAWL 646 (660)
Q Consensus 618 ~G~rv~~~eIE~~L~~~~~V~~a~vv~~~ 646 (660)
+|++|+|.|||.+|.+||+|.+++|+...
T Consensus 443 ~G~~v~~~eiE~~l~~~~~v~~~~vv~~~ 471 (545)
T PRK07768 443 AGRNIYPTDIERAAARVEGVRPGNAVAVR 471 (545)
T ss_pred CCEecCHHHHHHHHHhCcccccceEEEEE
Confidence 99999999999999999999997776543
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=405.86 Aligned_cols=419 Identities=17% Similarity=0.163 Sum_probs=324.6
Q ss_pred CCceeecHHHHHHHHHHHHHHHHhc-cCCCCE-EEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCee
Q 006121 205 SAVNLMTYKELREQVMLVANALDTM-FSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAK 282 (660)
Q Consensus 205 ~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~-V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~ 282 (660)
++...+||.|+.+++.++|+.|.+. ++++++ |+|+++.+.+|+++.+||++.+...|.+...+..+-|.+-|.+++++
T Consensus 85 g~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~ 164 (678)
T KOG1180|consen 85 GDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETEST 164 (678)
T ss_pred cceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccce
Confidence 3556899999999999999999999 997776 99999999999999999999999999999999999999999999999
Q ss_pred EEEeecceeecCccccchhhHhccCCCcEEEEcCCCC-----CCCCC----CCCCCcchhhhhccCCCCCCCCCCCCccC
Q 006121 283 GIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN-----DVGIP----LREQDLSWKDFLSSVDYHPRPNYYSPVYN 353 (660)
Q Consensus 283 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
.|+|+...+ +.+.......+....++..+.. ..+.. .....+++++++.-+.... .++.+.
T Consensus 165 ~i~T~~~LL------~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~----~~~~~P 234 (678)
T KOG1180|consen 165 AIFTDSELL------PKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE----IPPHPP 234 (678)
T ss_pred EEEeCHHHH------HHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC----CCCCCC
Confidence 999998643 3333333444444444433321 11111 1234578888888776521 233344
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhc-CCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP 432 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~ 432 (660)
.|+|+|+|||||||||.|||||++|+|++..+....... .+.+.|+++.++|++|..-+..=+.++..|+++-..+...
T Consensus 235 ~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~T 314 (678)
T KOG1180|consen 235 KPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLT 314 (678)
T ss_pred CCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcce
Confidence 789999999999999999999999999999887776655 6789999999999999998855568899999887654321
Q ss_pred --Ch-hh----HHHHHHHcCCeEEeecHHHHHHHHhcC-------------------------CC-CCC-----------
Q 006121 433 --LE-RS----FGKFVQDAGVTVLGTVPSLVKAWRNTN-------------------------CL-EGL----------- 468 (660)
Q Consensus 433 --~~-~~----l~~~i~~~~vt~l~~~P~~l~~l~~~~-------------------------~~-~~~----------- 468 (660)
|. .. ---.+...++|++.++|++|.++.+.- .. ...
T Consensus 315 Ltdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFk 394 (678)
T KOG1180|consen 315 LTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFK 394 (678)
T ss_pred ecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHH
Confidence 11 11 122356779999999999988765430 00 000
Q ss_pred -----CccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CC
Q 006121 469 -----DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-EC 542 (660)
Q Consensus 469 -----~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~ 542 (660)
---.||.+++||.+|+++..+.+--.+ .+++..+||.||+++..+...+. .-..+.+|.|++-++++++| ++
T Consensus 395 KIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~-d~~~g~vG~pl~c~eiKLvdw~E 472 (678)
T KOG1180|consen 395 KIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPE-DFSTGRVGAPLPCCEIKLVDWEE 472 (678)
T ss_pred HHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChh-hcccccccCCccceEEEEEEhhh
Confidence 012799999999999999877666554 37999999999998755444332 34456899999999999999 44
Q ss_pred CCcCCCCCCceeEEEE-----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccc-
Q 006121 543 GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN- 616 (660)
Q Consensus 543 ~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~ik- 616 (660)
|--.+.+.|.-|||+| .+||++ |++.|++.|.. .+|.|||+|||+|+|.+||.|.+++|++|.||
T Consensus 473 gGY~~~~~PPrGEI~i~G~~vt~gY~k------n~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKl 543 (678)
T KOG1180|consen 473 GGYFAKNKPPRGEILIGGPNVTMGYYK------NEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKL 543 (678)
T ss_pred cCccCCCCCCCceEEecCCccChhhhC------Chhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhh
Confidence 4433333322389998 456666 99999999986 46899999999999999999999999999999
Q ss_pred cCceeecchHHHHhhcCCCCceeeEEEE
Q 006121 617 LGGIKALLLPLTFLSSPRSSFKCLHIYA 644 (660)
Q Consensus 617 i~G~rv~~~eIE~~L~~~~~V~~a~vv~ 644 (660)
-+|+-|.++-||++++..|-|+...|.+
T Consensus 544 q~GEYIsL~KvEa~l~s~p~V~NICvyA 571 (678)
T KOG1180|consen 544 QNGEYISLGKVEAALRSSPYVDNICVYA 571 (678)
T ss_pred cccceeehHHHHHHHhcCcchhheEEec
Confidence 5899999999999999999999866544
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=387.56 Aligned_cols=439 Identities=20% Similarity=0.170 Sum_probs=337.8
Q ss_pred CcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 184 ~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
.||+++|+++|+++.+.. +++||+|++++++++|+.|... ++.||.|||+|+|+++++...||..|+|++..-
T Consensus 85 ~~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~ 158 (649)
T KOG1179|consen 85 SQVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAF 158 (649)
T ss_pred HHHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeee
Confidence 366899999999998742 2899999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
|+++...+-|.+-+.-++++++|++.+.... +.++.+.+.. .+.+...... ...++..++...++....
T Consensus 159 iNtNlR~~~LlHsi~~s~aralv~~~el~~~------~~e~~~~l~~~~i~~~~~~~~----~~~~g~~~L~~~l~~~~~ 228 (649)
T KOG1179|consen 159 INTNLRGEPLLHSITVSGARALVVGPELLNA------LEEILPLLIKNGIHVFSLGPT----SVPDGIESLLAKLSAAPK 228 (649)
T ss_pred eccccccchhhhhhhhcCceEEEECHHHHHH------HHhcchhhhhccceEEecCCC----CCCchHHHHHHhhccccc
Confidence 9999999999999999999999999864321 1111111111 1222222111 111223333333333332
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~ 420 (660)
.+.+ ........-.+++..||||||||.||..+++|.-+..........++++++|+++..+|+.|.++. ..+-.++.
T Consensus 229 ~~vp-~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~ 307 (649)
T KOG1179|consen 229 HPVP-VSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLL 307 (649)
T ss_pred CCCC-cccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHh
Confidence 1111 022234455789999999999999999999999988777767778999999999999999998776 67889999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+|+|+-. .++...+|+...+|+||+..-.--+++.|+..+......-..+|..+-.| +.++.++.|.++++..+|
T Consensus 308 ~GaT~Vlrk-KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~I 384 (649)
T KOG1179|consen 308 HGATVVLRK-KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKI 384 (649)
T ss_pred cCceEEEec-ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCCeE
Confidence 999999976 68899999999999999999999999999998876665667888877444 779999999999988889
Q ss_pred eccccccccccccccCCcCCCCcccccCc------CCCCceEE---------EEcCCCC--cCCCCCCceeEEEE---ec
Q 006121 501 IESCGGTELSSAYIQGSLLQPQAFGAFST------ATMTAGLV---------ILDECGV--PYPDDQPCVGEVGL---FP 560 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~------p~~~~~~~---------vld~~~~--~vp~G~~giGel~v---~~ 560 (660)
...||+||..+..... ....+.+|+ -+--.++- |-|++|- +|++|+| |.++- ..
T Consensus 385 gE~YgaTEgn~~~~N~----d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEp--GlLv~~i~~k 458 (649)
T KOG1179|consen 385 GEFYGATEGNSNLVNY----DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEP--GLLVGKIVQK 458 (649)
T ss_pred EEEeccccCcceeeee----cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCC--ceEEEEeccC
Confidence 9999999988643322 122233332 11112222 2334443 6889998 74432 11
Q ss_pred cccCCcccccC-cccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCcee
Q 006121 561 LYLGASDRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKC 639 (660)
Q Consensus 561 ~y~~~~~~~~~-~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~ 639 (660)
.-.....+|.+ .+.|+.+...|-|..|+.||.|||+-.+|+.|++||.+|..|...-.|++|+..|||++|.....++|
T Consensus 459 ~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~d 538 (649)
T KOG1179|consen 459 NPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQD 538 (649)
T ss_pred CchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccc
Confidence 11111122334 77888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeec
Q 006121 640 LHIYAWLYF 648 (660)
Q Consensus 640 a~vv~~~~~ 648 (660)
+.|+....+
T Consensus 539 v~VYGV~VP 547 (649)
T KOG1179|consen 539 VNVYGVTVP 547 (649)
T ss_pred eeEEEEecC
Confidence 988876543
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=395.31 Aligned_cols=401 Identities=12% Similarity=0.039 Sum_probs=289.2
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+.+... .++++.+||+|+.++++++|++|++. +++||+|+|+++|+++|+++.+||+++|++.||++
T Consensus 437 a~~~pd~~al~~~~~---~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly 513 (1452)
T PTZ00297 437 VTRHSTFRCLGQTSE---SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLV 513 (1452)
T ss_pred HHHCCCCeEEEEecc---CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCC
Confidence 478999999964311 12345899999999999999999999 99999999999999999999999999999999997
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCC--CC--CCCCCcchhhhhccCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG--IP--LREQDLSWKDFLSSVD 340 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 340 (660)
+ +.+++.+++++++++++|++.... +.+..+....-..++++........ .. .....++|++++..+.
T Consensus 514 ~--t~~eL~yIL~~S~akvVfv~~~~l------~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~ 585 (1452)
T PTZ00297 514 G--KGSTMRTLIDEHKIKVVFADRNSV------AAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR 585 (1452)
T ss_pred C--CHHHHHHHHHhcCCcEEEEchhHH------HHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCc
Confidence 5 467899999999999999986432 1122221111123333321100000 00 0112467888887653
Q ss_pred CCCCCCCCCCccCCCCCeEEEEe---cCCCCCCcceEEecchhhHHHHHHhhHhc---CCCCCCEEEEecCccccchhhH
Q 006121 341 YHPRPNYYSPVYNPVDAVVNILF---SSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVI 414 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~i~~---TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~ 414 (660)
.. .. .......++|++.|+| ||||||.||||++||+|++..+....... ...++|+++.++|++|.++...
T Consensus 586 ~~--~~-~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~ 662 (1452)
T PTZ00297 586 LC--PV-PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF 662 (1452)
T ss_pred cc--Cc-cccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHH
Confidence 21 11 1123346889999996 99999999999999999988887654432 3567899999999999988766
Q ss_pred HHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcC----CC----------------------CCC
Q 006121 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CL----------------------EGL 468 (660)
Q Consensus 415 ~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----~~----------------------~~~ 468 (660)
.+.++..|+++.. .++..+++.|+++++|++.++|.++..+.+.. .. ...
T Consensus 663 ~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~ 738 (1452)
T PTZ00297 663 VLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRR 738 (1452)
T ss_pred HHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6788999999864 35789999999999999999999998775421 00 000
Q ss_pred Cc----------------cCccEEEeecC--CCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcC
Q 006121 469 DW----------------TKIRSFASTGE--TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 530 (660)
Q Consensus 469 ~l----------------~~lr~v~~gGe--~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p 530 (660)
.. ..+|.+++||. +++..+ .. +++++.+||.||... ..... .....|+|
T Consensus 739 ~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l-----~~--~i~i~~g~glTE~~~---~~~~~---~~~~~G~P 805 (1452)
T PTZ00297 739 DSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSL-----LE--HISVCYVPCLREVFF---LPSEG---VFCVDGTP 805 (1452)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHH-----hC--CceEEEecceEEeee---ecCCC---CcccCCee
Confidence 00 36888988873 443222 12 467888999999532 22221 11234999
Q ss_pred CCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEec
Q 006121 531 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610 (660)
Q Consensus 531 ~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR 610 (660)
+|+++++|.|....--..+ .|||+++ |.+ +++.|++.+ +.|++||+|.|+||
T Consensus 806 lpgvEvKI~~~~E~~~~~~---~GEIlvr--~~k------dpe~T~e~~-----------------~gW~~dG~L~IidR 857 (1452)
T PTZ00297 806 APSLQVDLEPFDEPSDGAG---IGQLVLA--KKG------EPRRTLPIA-----------------AQWKRDRTLRLLGP 857 (1452)
T ss_pred cCceEEEEcccccccCCCC---CCeEEEE--ECC------ChHHHHHhh-----------------CcCccCCeEEEEec
Confidence 9999999987321101112 3999993 333 666666521 23558999999999
Q ss_pred cCCccc-cCceeecchHHHHhhcCCCCceeeEEEEE
Q 006121 611 ADDTMN-LGGIKALLLPLTFLSSPRSSFKCLHIYAW 645 (660)
Q Consensus 611 ~dd~ik-i~G~rv~~~eIE~~L~~~~~V~~a~vv~~ 645 (660)
++|.|| .+|++|.|..||+.+.++|.|.+++|+..
T Consensus 858 kKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd 893 (1452)
T PTZ00297 858 PLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYAD 893 (1452)
T ss_pred cccceECCCCcEEcHHHHHHHHhcCCCccEEEEEec
Confidence 999999 58999999999999999999999988764
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=327.37 Aligned_cols=260 Identities=15% Similarity=0.112 Sum_probs=210.3
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEe--cCC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY--QGS 431 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~--~~~ 431 (660)
.+++++|++|||||||.||||+++|+++.+........+ ...++++...|+.|..++..++.+++.|+++++. ...
T Consensus 33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~ 110 (358)
T PRK07824 33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAG 110 (358)
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCCC
Confidence 468999999999999999999999999988777655443 3557888999999999988888999999999984 345
Q ss_pred CChhhHHHHHHHcC--CeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccccccc
Q 006121 432 PLERSFGKFVQDAG--VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 509 (660)
Q Consensus 432 ~~~~~l~~~i~~~~--vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 509 (660)
+++..+++.+++++ +++...+|+.+..++.... ...+++++|.+++||+++++++.+++.+. +++++|.||+||+
T Consensus 111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~ 187 (358)
T PRK07824 111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSET 187 (358)
T ss_pred cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCcc
Confidence 68889999999998 5677788998887776533 23457899999999999999998888753 5889999999998
Q ss_pred ccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCccccccccccccc
Q 006121 510 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM 584 (660)
Q Consensus 510 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~ 584 (660)
+..+ ...|+|+++++++|.| |||++ .+||.+ +++. ..|.
T Consensus 188 ~~~~-----------~~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY~~------~~~~--~~~~---- 231 (358)
T PRK07824 188 SGGC-----------VYDGVPLDGVRVRVED-------------GRIALGGPTLAKGYRN------PVDP--DPFA---- 231 (358)
T ss_pred CCCc-----------CcCceeCCCCEEEecC-------------CEEEEecCccccccCC------Cccc--cccc----
Confidence 7532 1358999999999843 77777 345554 2221 1222
Q ss_pred CCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 585 ~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
...||+|||+|++ .||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|+...+.. +..+++++
T Consensus 232 --~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v 302 (358)
T PRK07824 232 --EPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAV 302 (358)
T ss_pred --CCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEE
Confidence 1229999999999 8999999999999999999999999999999999999999988765443 45566665
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=307.08 Aligned_cols=242 Identities=11% Similarity=0.038 Sum_probs=188.7
Q ss_pred CCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCC--CCEEEEecCccccchh-hHHHHhhhcCcEEEEecCCC
Q 006121 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSP 432 (660)
Q Consensus 356 ~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~ 432 (660)
++.++++|||||||.||||+++|+++.+.+.+....++++. .+++++..|++|..+. +.++.+++.|+++++.+ .+
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CC
Confidence 55899999999999999999999999988877777777644 4689999999998776 66888999999999876 46
Q ss_pred ChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccc
Q 006121 433 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512 (660)
Q Consensus 433 ~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 512 (660)
++..+++.++. .|++.++|++++.|.+.. .+++++|. ++||+++++++.+.+.+. +..+++|.||+||++++
T Consensus 174 ~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARP--GDLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhcc--CCEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 67777777764 389999999999998652 34678886 678999999999988775 32469999999999864
Q ss_pred cccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEe
Q 006121 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR 592 (660)
Q Consensus 513 ~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~ 592 (660)
..... +...|+|+|+.++.+ | ++ . + .| | ..||+
T Consensus 246 ~~~~~------~~~~~~~~p~~~~~~-~-~~------~----~----~g---------------------~----~~~~~ 278 (386)
T TIGR02372 246 GLREA------PDDPFRLLPDLACFA-D-TL------S----S----AG---------------------L----ARRLD 278 (386)
T ss_pred ccccC------CCCCcccCCCccccC-C-Cc------c----C----CC---------------------c----cceee
Confidence 33211 123467777665432 1 11 0 0 00 0 12689
Q ss_pred eCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcceeeeec
Q 006121 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKLELIFYF 657 (660)
Q Consensus 593 TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~~l~a~~ 657 (660)
|||+++||+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|+. .+..+.+|+
T Consensus 279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~----~g~~~~a~v 339 (386)
T TIGR02372 279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL----DGRRLKAFI 339 (386)
T ss_pred cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc----CCceEEEEE
Confidence 9999999999999999999999999999999999999999999999987752 234555554
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=299.62 Aligned_cols=263 Identities=18% Similarity=0.153 Sum_probs=199.5
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHHH---hhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEec
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~ 429 (660)
+++++++++|||||||+||+|.++|+++...... ....++++++|+++...++++..+. ...+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 4568899999999999999999999998654332 2344688999999887666554333 33566788999998776
Q ss_pred CCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCC--CCccCccEEEeecCCCChhhHHHHHhhCCCCceecccccc
Q 006121 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (660)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (660)
. .+++.+++.|+++++|++.++|+++..|++...... ....++|.+++|||+++++..+.+.+.++ ++++|.||+|
T Consensus 153 ~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~t 230 (422)
T TIGR02155 153 G-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGLS 230 (422)
T ss_pred C-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccch
Confidence 3 356889999999999999999999998876432222 12358999999999999999888887774 8899999999
Q ss_pred ccccccccCCcCCCCcccccCcCCC--CceEEEEc-CCCCcCCCCCCceeEEEEeccccCCcccccCccccccccccccc
Q 006121 508 ELSSAYIQGSLLQPQAFGAFSTATM--TAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 584 (660)
Q Consensus 508 E~~~~~~~~~~~~~~~~~~iG~p~~--~~~~~vld-~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~ 584 (660)
|+++......... ...|.++. +..+.|+| ++++++|+|++ |||++..- +...| |.
T Consensus 231 E~~~~~~~~~~~~----~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~--Gelvvt~~-------------~~~~~---p~ 288 (422)
T TIGR02155 231 EVIGPGVAMECVE----TQDGLHIWEDHFYPEIIDPHTGEVLPDGEE--GELVFTTL-------------TKEAL---PV 288 (422)
T ss_pred hhcCCceeecccc----cCCCceEecCeeEEEEECCCCCCCCCCCCe--eEEEEecC-------------Ccccc---ce
Confidence 9853111111100 11244443 46677999 58999999997 99999531 11223 21
Q ss_pred CCCceeEeeCceEEEecC-c-----eEEEEeccCCccccCceeecchHHHHhhcCCCCce-eeEEEE
Q 006121 585 YKGMCLRRHGDIIKRTVG-G-----YIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFK-CLHIYA 644 (660)
Q Consensus 585 ~~~~r~y~TGDl~~~~~d-G-----~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~-~a~vv~ 644 (660)
.||+|||+++++++ | .++|.||.||+||++|.+|+|.|||.+|.+||+|. +.+++.
T Consensus 289 ----~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~ 351 (422)
T TIGR02155 289 ----IRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLEL 351 (422)
T ss_pred ----eeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEE
Confidence 28999999999886 4 47899999999999999999999999999999998 444433
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=294.24 Aligned_cols=441 Identities=15% Similarity=0.067 Sum_probs=289.7
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p 265 (660)
...|+.++..+-......+...++||++....+|.+++.|... .-+|+.|++++.++.++++.+++++++|..++|+||
T Consensus 47 ~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp 126 (1032)
T KOG1178|consen 47 AEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDP 126 (1032)
T ss_pred hhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecC
Confidence 4455555555433322334456899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCC----HHHHHHHH---HhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhcc
Q 006121 266 SFA----AREIATRL---RVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (660)
Q Consensus 266 ~~p----~~~l~~~l---~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 338 (660)
++| ++++..+. ......++. .++...........+..+ ....-.+..+...
T Consensus 127 ~~~~~e~~~~~~~ia~~~~s~~~~i~~----------~l~i~~~~~~~~~~~~sv------------~~~~~~f~~~~~~ 184 (1032)
T KOG1178|consen 127 SWPNSELAGYLMRIAHFLTSVELEIVR----------RLNIIDILLNSLFPKLSV------------ETIADSFQMVLHN 184 (1032)
T ss_pred CCcccccchHHHhhhhhheeccceehh----------hhhhHHHHhhccccccch------------hhccchhhhhhcc
Confidence 999 44222221 111111110 001111111100000000 0000011111111
Q ss_pred CCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHh
Q 006121 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 418 (660)
. ........-+++.+++.|||||||.||||.-+|..+.+...|....+..+..+++-....+.++-.+...+.+
T Consensus 185 ~------~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~ 258 (1032)
T KOG1178|consen 185 E------DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGA 258 (1032)
T ss_pred C------CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhh
Confidence 1 1112234456789999999999999999999999999999999999999999988666777788787776666
Q ss_pred hhcCcEEEEecCCC---ChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC-------------CCCCccCccEEEeecCC
Q 006121 419 FLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------------EGLDWTKIRSFASTGET 482 (660)
Q Consensus 419 l~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~-------------~~~~l~~lr~v~~gGe~ 482 (660)
++.++..++++... .+.++.+.+++++++..+.+|++.+.++..... .....+.|+....+||+
T Consensus 259 ~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep 338 (1032)
T KOG1178|consen 259 LLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEP 338 (1032)
T ss_pred HhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCc
Confidence 66666655555332 368899999999999999999998887654221 11223479999999999
Q ss_pred CChhhHHHHHhhCCCCceeccccccccccccccCCcCC------CCcc--cccCcCCCC--ceEEEEcCCCCcCCCCCCc
Q 006121 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAF--GAFSTATMT--AGLVILDECGVPYPDDQPC 552 (660)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~~~--~~iG~p~~~--~~~~vld~~~~~vp~G~~g 552 (660)
....+...+...+...-..+-|++|+.+.-.+...... .... .+.+.-+-| +-+.++...+.+.+.++
T Consensus 339 ~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v-- 416 (1032)
T KOG1178|consen 339 LLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGV-- 416 (1032)
T ss_pred cchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcc--
Confidence 99888775554444333455599888775433211110 0000 011111111 33455556666666665
Q ss_pred eeEEEEeccccCCcccccCccccccccccccc---CCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHH
Q 006121 553 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPM---YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTF 629 (660)
Q Consensus 553 iGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~---~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~ 629 (660)
|..|++.++....-. -..-.+.+.|.++.. ....|+|||||+||..++|.+.|.||.|+|||+||+||+++||++
T Consensus 417 -~~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t 494 (1032)
T KOG1178|consen 417 -GKGCLGAEQNLSSWV-VDGYSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNT 494 (1032)
T ss_pred -cceeeccccccccee-eccccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhch
Confidence 444443322211000 001123334443322 234679999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeeEEEEEeecC-cceeeeeccc
Q 006121 630 LSSPRSSFKCLHIYAWLYFH-KLELIFYFSQ 659 (660)
Q Consensus 630 ~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~~ 659 (660)
++..||.|+++.+.+..+.. +..|++|+..
T Consensus 495 ~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~ 525 (1032)
T KOG1178|consen 495 VVEVHPDVKEAITLARENSTVGQTLLAFVVE 525 (1032)
T ss_pred hhccCcchhhhheeeeeccccCceEEEEEec
Confidence 99999999999888877554 5668888643
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=255.18 Aligned_cols=256 Identities=16% Similarity=0.073 Sum_probs=187.7
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH---hcCCCCCCEEEEecCccccchhhH-HHHhhhcCcEEEEe
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALY 428 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~lv~~ 428 (660)
.+.++++.+.|||||||+||+|.++|+++.+....... ..+++++|+++...+.+++.+.+. .++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 35578999999999999999999999998766544333 348899999999999888777644 35567788876543
Q ss_pred cCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCC--CCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccc
Q 006121 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 506 (660)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (660)
. . ....+++|+++++|.+..+|+.+..|++...... ...+++|.+++|||+++++..+++.+.+ +++++|.||+
T Consensus 163 ~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~ 238 (445)
T TIGR03335 163 G-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGS 238 (445)
T ss_pred C-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCCh
Confidence 3 2 2456889999999999999998877765322111 1246899999999999999888887766 4899999999
Q ss_pred cccccccccCCcCCCCcccccCcCC--CCceEEEEcCC-CCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 507 TELSSAYIQGSLLQPQAFGAFSTAT--MTAGLVILDEC-GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~--~~~~~~vld~~-~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
||++.. ..+ .. ..|..+ +...+.|+|++ ++++|+|+. |||+++.-+-.. ..+ ..|
T Consensus 239 TE~~~~-~~c-~~------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~--GELvvT~L~~~~-------~r~-----~~P 296 (445)
T TIGR03335 239 TEGTMC-GEC-QA------VAGLHVPEDLVHLDVYDPRHQRFLPDGEC--GRIVLTTLLKPG-------ERC-----GSL 296 (445)
T ss_pred hhhhhe-EEe-cC------CCCccccCCceEEEEEcCCCCCCCcCCCc--eEEEEEecCCCC-------ccC-----Cce
Confidence 998632 111 11 123444 45778999976 567999997 999995432100 000 012
Q ss_pred cCCCceeEeeCceEEEec-C----c----eEEEEeccCCccccCceeecchHHHHhhcCC---CCce
Q 006121 584 MYKGMCLRRHGDIIKRTV-G----G----YIIVQGRADDTMNLGGIKALLLPLTFLSSPR---SSFK 638 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~-d----G----~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~---~~V~ 638 (660)
.. =|+|||++++.. + | .+..+||.||+++++|.+|.|.+||++|.++ +++.
T Consensus 297 li----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 297 LI----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred EE----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCC
Confidence 10 289999999742 2 2 2556799999999999999999999999995 5554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=214.71 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=159.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHh-c-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
++++|+++|+++.+.. .++..++||+||.++++++|+.|++ . +++||+|+|+++|+++++++++||+++|++++|+
T Consensus 6 ~~~~p~~~al~~~~~~--~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~ 83 (227)
T TIGR03089 6 LAADPASPRLTFYDDA--TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLA 83 (227)
T ss_pred hhhCCCCcEEEEEcCC--CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeC
Confidence 4678999999864320 0123479999999999999999998 8 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCC--CCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI--GNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+ +++++++|++++...... .+..++.+... ..........+..+|.+.+.....
T Consensus 84 n-------------~s~a~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (227)
T TIGR03089 84 G-------------DPDADVVVTGPDRLAAAA-----------GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGD 139 (227)
T ss_pred C-------------CCCCCEEEeCcchhhhcc-----------cCCceEEEeccccccCCCCCCCCcccchhhhhhccCC
Confidence 4 789999999986542211 11223333110 000000011233456555543221
Q ss_pred CCCCCCCCCc-cCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhh
Q 006121 342 HPRPNYYSPV-YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (660)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l 419 (660)
...+. ...++|+|.|+||||+ +|+++.... ...+++++|+++ .+|++|..++ ..++.+|
T Consensus 140 -----~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l 200 (227)
T TIGR03089 140 -----QFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPL 200 (227)
T ss_pred -----CCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHh
Confidence 11111 3466899999999986 666655443 456789999999 9999999998 5688999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHcCCe
Q 006121 420 LNGATLALYQGSPLERSFGKFVQDAGVT 447 (660)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt 447 (660)
..|+++++++ .+++..+++.|+++|||
T Consensus 201 ~~G~t~v~~~-rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 201 AAGGSLVLVT-HPDPARLDQIAETERVT 227 (227)
T ss_pred ccCceEEEec-CCCHHHHHHHHHhhcCC
Confidence 9999999996 78999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=225.72 Aligned_cols=437 Identities=14% Similarity=0.112 Sum_probs=290.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+++++||.+|+..-+. ++.+..++||++|..|+.++|.+|... +++||.|+++.++|.|++++++||+.+|.+++|
T Consensus 779 R~a~tp~~~a~~~~n~--~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIp 856 (1363)
T KOG3628|consen 779 RAAKTPDHIAFTTLNA--RGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIP 856 (1363)
T ss_pred HhhcCCCceEEEEecc--CCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeec
Confidence 3589999999998765 456778999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCCH------HHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhh
Q 006121 263 IADSFAA------REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (660)
Q Consensus 263 l~p~~p~------~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 336 (660)
+.|.... ..+..|++.++++.|+++.......+.......+....-..+.+.+.... +|..-.
T Consensus 857 v~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-----------t~~k~~ 925 (1363)
T KOG3628|consen 857 VPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-----------TIRKRK 925 (1363)
T ss_pred cCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-----------hhhhhh
Confidence 9886654 35788999999999999975432222222111111111111111111000 011111
Q ss_pred ccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHH
Q 006121 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (660)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 415 (660)
..... .....++....++.+||+-+.--++|.--||.++|.++++.++.......+.+..-++...+++-..++ ...
T Consensus 926 ~~~~k--~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wc 1003 (1363)
T KOG3628|consen 926 KNIKK--LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWC 1003 (1363)
T ss_pred hhhhc--cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHH
Confidence 11000 111222334466889999999899999999999999999999988888888777777777766666665 335
Q ss_pred HHhhhcCcEEEEecC---CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCc------cEEEeecCCCChh
Q 006121 416 FSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI------RSFASTGETSNVD 486 (660)
Q Consensus 416 ~~~l~~G~~lv~~~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~l------r~v~~gGe~l~~~ 486 (660)
+...++|.+.++.++ ..++..|+..|++++|.-++.+=..++...+....+..+++.. -.++..-|+....
T Consensus 1004 LlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~a 1083 (1363)
T KOG3628|consen 1004 LLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIA 1083 (1363)
T ss_pred HHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHH
Confidence 667779998777753 2378899999999999999999888888776543333333322 2223333343333
Q ss_pred hHHHHHhhCCC-----Ccee-------------ccccccccccccccCCcCCCCcc-------------cccCcCCCCce
Q 006121 487 DDLWLSSKAWY-----NAII-------------ESCGGTELSSAYIQGSLLQPQAF-------------GAFSTATMTAG 535 (660)
Q Consensus 487 ~~~~~~~~~~~-----~~l~-------------n~YG~TE~~~~~~~~~~~~~~~~-------------~~iG~p~~~~~ 535 (660)
+...+.+.+.. ..+- ++|-..|-+..+.-......... .-.|.-.++++
T Consensus 1084 li~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~ 1163 (1363)
T KOG3628|consen 1084 LIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTD 1163 (1363)
T ss_pred HHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccce
Confidence 34434333210 0122 22322222221111000011110 12377778999
Q ss_pred EEEEcC-CCCcCCCCCCceeEEEE-----eccccCCcccccCcccccccccc---cccCCCceeEeeCceEEEec-----
Q 006121 536 LVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRG---MPMYKGMCLRRHGDIIKRTV----- 601 (660)
Q Consensus 536 ~~vld~-~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~---~p~~~~~r~y~TGDl~~~~~----- 601 (660)
+.|+++ ...||..|+- ||||+ +.+|++.. ++.....|.. .....+..|-||||+|....
T Consensus 1164 i~IvnPEtk~pc~dge~--GEIW~~S~hnA~~~~~~~-----d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~ 1236 (1363)
T KOG3628|consen 1164 IAIVNPETKGPCRDGEL--GEIWVNSAHNASCSFTIG-----DELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTD 1236 (1363)
T ss_pred eEEeCCccccccccCCc--ceEEeccccccccccccC-----chhhhhhhhhhccccccccccceeeeeeeeeeeeeccc
Confidence 999995 5668999985 99999 34455432 2222223332 22334677999999998742
Q ss_pred -C----ceEEEEeccCCccccCceeecchHHHHhh-cCCCCceeeEEE
Q 006121 602 -G----GYIIVQGRADDTMNLGGIKALLLPLTFLS-SPRSSFKCLHIY 643 (660)
Q Consensus 602 -d----G~l~~~GR~dd~iki~G~rv~~~eIE~~L-~~~~~V~~a~vv 643 (660)
+ .-||++|-+++.+.++|.|..|.+||..+ +.||.|..++|.
T Consensus 1237 ~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF 1284 (1363)
T KOG3628|consen 1237 ANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVF 1284 (1363)
T ss_pred ccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeE
Confidence 2 25899999999999999999999999988 679999887653
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-21 Score=195.00 Aligned_cols=272 Identities=20% Similarity=0.148 Sum_probs=196.3
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh---HhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEe
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~ 428 (660)
.+-++...|--||||||+|+-+.+++..+........ ...+...+|++......+...+- ...+++--.|++++=.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 3446677799999999999999999988755444333 34578899999887776544333 4444555556555433
Q ss_pred cCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCC--CCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccc
Q 006121 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 506 (660)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (660)
. .-+-+.-+++|+.+++|++.++|+.+..|++..... ...-.+||.+++|+|+++++..+.+..+++ +..++.||.
T Consensus 167 ~-~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYGl 244 (438)
T COG1541 167 S-GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYGL 244 (438)
T ss_pred C-CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceeecccc
Confidence 2 235678899999999999999999999998764433 223358999999999999999999998875 889999999
Q ss_pred cccccccccCCcCCCCcccccCcC--CCCceEEEEc-CCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 507 TELSSAYIQGSLLQPQAFGAFSTA--TMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p--~~~~~~~vld-~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
||..+.-...+... . |-. -++.-+.|+| +.|+++|.|+. |||+++.-.-. ..|
T Consensus 245 tE~~g~g~~eC~~~----~--glhi~eD~~~~Ei~dP~t~e~l~dge~--GelV~T~L~~~----------------~~P 300 (438)
T COG1541 245 TEGFGPGAGECTER----N--GLHIWEDHFIFEIVDPETGEQLPDGER--GELVITTLTKE----------------GMP 300 (438)
T ss_pred ccccCCcccccccc----c--CCCcchhhceeeeecCCcCccCCCCCe--eEEEEEecccc----------------Ccc
Confidence 99976421111111 0 222 2456678899 57999999997 99998432111 022
Q ss_pred cCCCceeEeeCceEEEecC----ce-----EEEEeccCCccccCceeecchHHHHhhcCCCCce-eeEEEEEeecCccee
Q 006121 584 MYKGMCLRRHGDIIKRTVG----GY-----IIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFK-CLHIYAWLYFHKLEL 653 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~d----G~-----l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~-~a~vv~~~~~~~~~l 653 (660)
.. =|+|||+++..++ |+ -.+.||.||+++++|.+|.|..||.+|.+.+.+. +-.++...+.....|
T Consensus 301 lI----RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L 376 (438)
T COG1541 301 LI----RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDEL 376 (438)
T ss_pred eE----EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceE
Confidence 11 2999999999774 32 4589999999999999999999999999999998 433444333333344
Q ss_pred e
Q 006121 654 I 654 (660)
Q Consensus 654 ~ 654 (660)
.
T Consensus 377 ~ 377 (438)
T COG1541 377 T 377 (438)
T ss_pred E
Confidence 3
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=153.24 Aligned_cols=245 Identities=16% Similarity=0.063 Sum_probs=152.1
Q ss_pred eEEEEecCCCCCCcceEEecchhhHHHHHHhhH---hcCCCCCCEEEEecCccccchhhHHHHhhhcCcE-EEEecCCCC
Q 006121 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPL 433 (660)
Q Consensus 358 ~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~-lv~~~~~~~ 433 (660)
-..+..||||||+|-.+.++............. ..++..++++..+. +..+ .++.++.+... +-..+-..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh--hHHHHHHhccceeeecCCCcC
Confidence 356778999999999999999876432221111 12455666665542 1000 22222222221 233332335
Q ss_pred hhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccccccccccc
Q 006121 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY 513 (660)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 513 (660)
.+..++.|++++++++.+.|+.+..|++.......+ .+++.++++||.+++...+.+.+.++ +++++.||+|| +.+.
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tE-g~la 252 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATE-GFLA 252 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCch-hheE
Confidence 678999999999999999999999998754333323 47899999999999988888887775 89999999999 4332
Q ss_pred ccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEee
Q 006121 514 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH 593 (660)
Q Consensus 514 ~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~T 593 (660)
..+. .... .+--..--++..++|+++++ ..+|+.- .+. ..|.. =|+|
T Consensus 253 ~eC~--~g~l--Hl~ed~~~vE~~ivD~~~~~---------~~ViT~L-~n~---------------~~PlI----RYrt 299 (430)
T TIGR02304 253 STCR--CGTL--HLNEDLVHIEKQYLDEHKRF---------VPIITDF-TRT---------------TQPIV----RYRL 299 (430)
T ss_pred EecC--CCCE--EEccccEEEEeeEECCCCce---------EEEEecC-CCc---------------cceEE----eeeC
Confidence 2221 1000 00000001223367876543 3333221 110 12211 2999
Q ss_pred CceEEEecC----c----eE-EEEeccCCcccc---Cc--eeecchHHHHhh-cCCCCceeeEEE
Q 006121 594 GDIIKRTVG----G----YI-IVQGRADDTMNL---GG--IKALLLPLTFLS-SPRSSFKCLHIY 643 (660)
Q Consensus 594 GDl~~~~~d----G----~l-~~~GR~dd~iki---~G--~rv~~~eIE~~L-~~~~~V~~a~vv 643 (660)
||++++.++ | .| .+.||.||++++ +| ..|.|..|+.++ ...++|.+..++
T Consensus 300 GD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~ 364 (430)
T TIGR02304 300 NDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVL 364 (430)
T ss_pred CCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEE
Confidence 999998554 3 24 388999999985 34 556899998884 467888887665
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=136.03 Aligned_cols=416 Identities=12% Similarity=0.063 Sum_probs=252.3
Q ss_pred CCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHH-HHHhc-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEe
Q 006121 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN-ALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 187 ~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~-~L~~~-v~~gd~V~i~~~~s--~~~vva~lA~lkaGa~~vp 262 (660)
.+++..+|.++-+.. +....+||..+..||.++|+ .|-+. ..++|+|.++...+ .++++++++|.-+|.+.+|
T Consensus 105 nhs~~~ta~i~id~k---gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp 181 (1363)
T KOG3628|consen 105 NHSATSTAHICIDKK---GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVP 181 (1363)
T ss_pred cCCCCCceEEEEcCC---CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeecc
Confidence 567788899888763 23789999999999999999 55555 99999999998764 8999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+.+.++.+++..+++....+++++.....+.+... . .. ..+ +..+.|....+.....
T Consensus 182 ~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~---------~-~~------------~s~-~k~v~~w~t~~~k~~~ 238 (1363)
T KOG3628|consen 182 LSELSSSEELKDIVNPTPERVALTTEAGERAFIND---------N-SP------------VSL-AKAVAWWKTNDFKGNY 238 (1363)
T ss_pred chhhhhhhhhhcccCCCccceEeehhhhHHHhhhc---------c-Cc------------ccH-HHHHHhhhccccccee
Confidence 99999999999999999999999887543211100 0 00 000 0000011000000000
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHH---------------Hh-----hHhcCCCCCCEEEE
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---------------EG-----WAHIDLKVGDVYCW 402 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---------------~~-----~~~~~~~~~~~~l~ 402 (660)
.. .....+...-. ..||-||++++|+--||+.+|+ +.+..+ +. ...+++...++++.
T Consensus 239 ~~-~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 239 TK-DKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred eh-hhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 00 00111111222 8999999999999999999998 433221 11 11123444555555
Q ss_pred ecCccccchh-hHHHHhhhcCcEEEEecCCC--ChhhHHHHHHHcCCeEEeecHHHHHHHHhc----C-------CCCCC
Q 006121 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNT----N-------CLEGL 468 (660)
Q Consensus 403 ~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~-------~~~~~ 468 (660)
....+-..|+ ..++.+|.+|.|.+..|... .|..+..++.+++.+++..=-..+++.... + .....
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~ 395 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTP 395 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCC
Confidence 4444433443 34789999999999998644 466888999999999887654444443221 0 01124
Q ss_pred CccCccEEEeecCCCChhhHH----HHHhhCCCCceeccccc-----------------cccccccccCCcCC-------
Q 006121 469 DWTKIRSFASTGETSNVDDDL----WLSSKAWYNAIIESCGG-----------------TELSSAYIQGSLLQ------- 520 (660)
Q Consensus 469 ~l~~lr~v~~gGe~l~~~~~~----~~~~~~~~~~l~n~YG~-----------------TE~~~~~~~~~~~~------- 520 (660)
+++++|..++.-+++..+..+ +|.+-.+.....-.|-| +|.+..........
T Consensus 396 d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e 475 (1363)
T KOG3628|consen 396 DLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGE 475 (1363)
T ss_pred CccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccc
Confidence 688999999998888776422 22221111111111222 33332111100000
Q ss_pred -----------------C-----CcccccCcCCC-CceEEEEcC-CCCcCCCCCCceeEEEE-----eccccCCcccccC
Q 006121 521 -----------------P-----QAFGAFSTATM-TAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (660)
Q Consensus 521 -----------------~-----~~~~~iG~p~~-~~~~~vld~-~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~ 571 (660)
. ...-..|.-.+ .+.+.|+++ ..++|..++. ||||| +.+|+. -
T Consensus 476 ~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eV--GEIwVsS~~~~~~~~a------l 547 (1363)
T KOG3628|consen 476 GLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEV--GEIWVSSNSLGKLFYA------L 547 (1363)
T ss_pred eeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcc--eeEEEecCCcccceee------c
Confidence 0 00011233333 345666664 5778889984 99999 233433 2
Q ss_pred ccccccccccccc------CCCceeEeeCceEEEecCceEEEEeccCCccc-cCceeecchHH----------HHhhcCC
Q 006121 572 ADHEEVYFRGMPM------YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKALLLPL----------TFLSSPR 634 (660)
Q Consensus 572 ~~~t~~~f~~~p~------~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~ik-i~G~rv~~~eI----------E~~L~~~ 634 (660)
+..|..-|...|. .....+.|||=+|.+. .|.++|+|-++|++- .+|-+....+| +.+.+..
T Consensus 548 ~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v 626 (1363)
T KOG3628|consen 548 DKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGV 626 (1363)
T ss_pred cccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhcc
Confidence 3344444444332 2234588999999996 455777776666655 78877776554 4555566
Q ss_pred CCceee
Q 006121 635 SSFKCL 640 (660)
Q Consensus 635 ~~V~~a 640 (660)
+.|-++
T Consensus 627 ~~VF~~ 632 (1363)
T KOG3628|consen 627 IAVFDV 632 (1363)
T ss_pred ceEEEE
Confidence 666554
|
|
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-14 Score=117.87 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC------CcccCCChhhhcccchHHHHHHhCCcccccc-
Q 006121 41 DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP------PLYWFPSLDQSKLTNLGNALEIHGPKLLGRA- 113 (660)
Q Consensus 41 ~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~------~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~- 113 (660)
+||+|||++ |+++|++.|+. ++.|||||||+||+..... .....+.....++|||++.+.+.++++.+.+
T Consensus 1 ~hq~~Pf~~-lv~~l~~~r~~--~~~plfqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~ 77 (91)
T PF13745_consen 1 EHQDYPFER-LVEALGPPRDP--SRNPLFQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLE 77 (91)
T ss_dssp -T--S-HHH-HHHHT-----T--TS-SS-SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEE
T ss_pred CCccCCHHH-HHHHhCcccCC--ccccccCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEE
Confidence 599999999 99999999884 4556699999999976532 1223445578899999999999999999999
Q ss_pred cCCCCccHHHHHHHHhhCH
Q 006121 114 YKDPITSFRLFQKFTVEHP 132 (660)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~ 132 (660)
|++ ++|++++|++|
T Consensus 78 Y~~-----~lf~~~ti~~~ 91 (91)
T PF13745_consen 78 YNT-----DLFSEETIERM 91 (91)
T ss_dssp EET-----TT--HHHHHHH
T ss_pred EEh-----HhCCHHHHhcC
Confidence 999 99999999875
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-10 Score=119.74 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=57.0
Q ss_pred ceeEeeCceEEE-ecCceEEEEeccCCccccCc---eeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 588 MCLRRHGDIIKR-TVGGYIIVQGRADDTMNLGG---IKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 588 ~r~y~TGDl~~~-~~dG~l~~~GR~dd~iki~G---~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.+||+|||+|++ |+||+|+|.||.| +| ++|+|. ||++|.+||+|.+|+|+...+.. +..++||+.
T Consensus 208 dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv 277 (365)
T PRK09188 208 RIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVE 277 (365)
T ss_pred CcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEE
Confidence 349999999998 6999999999998 88 799999 99999999999999999887655 456777764
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-08 Score=103.96 Aligned_cols=236 Identities=17% Similarity=0.083 Sum_probs=128.9
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh---hHhcCCCCCC--EEEEecCcccc-----chhhHHHHhhhcCc
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGD--VYCWPTNLGWV-----MGPVILFSSFLNGA 423 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~--~~l~~~~~~~~-----~~~~~~~~~l~~G~ 423 (660)
+++++..++-||||||.|--+.+.+..+....... ...+...... .++...|-... +........+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 44667788999999999855555555554433222 2222222222 22333332211 11122333344555
Q ss_pred EEEEecCCCChhhHHHHH----HHcCCeEEeecHHHHHHHHhcCCCC--CCCcc-CccEEEeec------CCCChh-hHH
Q 006121 424 TLALYQGSPLERSFGKFV----QDAGVTVLGTVPSLVKAWRNTNCLE--GLDWT-KIRSFASTG------ETSNVD-DDL 489 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i----~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~-~lr~v~~gG------e~l~~~-~~~ 489 (660)
.-.+-....+.+.+.+.+ .+.+...+++.|.++-.++...... ...|+ ..+.+-.|| |.++.+ ..+
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 533322345666555544 3456778888888665554332111 22333 344555554 456544 455
Q ss_pred HHHhhCCC---CceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEEeccccCC
Q 006121 490 WLSSKAWY---NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGA 565 (660)
Q Consensus 490 ~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v~~~y~~~ 565 (660)
.+.+.++. ..+++.||+||............ .++|-. +.|.|+ +.+++|.|++ |-|.+-..+...
T Consensus 247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~--------~~~p~w-V~iRDp~tl~~~~~Ge~--Gli~vidl~~~s 315 (365)
T PF04443_consen 247 RLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH--------FHVPPW-VIIRDPETLEPLPPGET--GLIQVIDLANTS 315 (365)
T ss_pred HHHHHHCCCCHHHeeeeeeccccchhheeCCCCc--------ccCCCe-EEEECCCCCcCCCCCCe--eEEEEEcccccC
Confidence 56665643 36999999999875433221111 122222 777784 6899999997 888872221110
Q ss_pred cccccCcccccccccccccCCCceeEeeCceEEEecC--------ceEEEEeccCCccccCceee
Q 006121 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--------GYIIVQGRADDTMNLGGIKA 622 (660)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~d--------G~l~~~GR~dd~iki~G~rv 622 (660)
. ++ ..-|.|+|.+..+ .+++++||.+.- .+||-..
T Consensus 316 ----------------~---p~--~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~a-e~RGCs~ 358 (365)
T PF04443_consen 316 ----------------Y---PG--FILTEDLGVLHGDDDCGCRKGKYFEVLGRADGA-EIRGCSL 358 (365)
T ss_pred ----------------C---Cc--EEEEcceeeecCCCCCCCccCCEEEEEeCCCCC-ccCCcHH
Confidence 1 12 3569999988665 279999998743 3566443
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.1e-05 Score=85.54 Aligned_cols=131 Identities=16% Similarity=0.064 Sum_probs=72.7
Q ss_pred ccCccEEEeecCCCChhhHHHHHhhCCCCc-eeccccccccccccccCCcCCCCcccccCcCCCCce---EEEEcCC---
Q 006121 470 WTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG---LVILDEC--- 542 (660)
Q Consensus 470 l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~-l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~---~~vld~~--- 542 (660)
+|+|+.|.+-+..-...-...++..+++.. +...|+.||+-+.+ ... +.. +.+...++.. .-=+|+.
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i-~~~---~~~--~~~~l~~~~~ffEFip~~~~~~~ 339 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGI-PLD---PED--PGYVLAPDSGFFEFIPVDEDEQN 339 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEE-ES----CCC----EEE-TTSSEEEEEE-STT---
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEE-ecC---CCC--CceEeecCCeEEEEEeccCCccc
Confidence 578886655444433445667777777655 45799999975422 111 111 1223333332 2222322
Q ss_pred ----CCc-----CCCCCCceeEEEEe--ccccCCcccccCcccccccccccccCCCceeEeeCceEEEec--Cc--eEEE
Q 006121 543 ----GVP-----YPDDQPCVGEVGLF--PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV--GG--YIIV 607 (660)
Q Consensus 543 ----~~~-----vp~G~~giGel~v~--~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~--dG--~l~~ 607 (660)
.+. |..|+. -||.|+ .|.+ =|+.||+++... ++ .|+|
T Consensus 340 ~~~~~~~l~~~ele~G~~--YelviTt~~GLy--------------------------RY~iGDvVrv~gf~~~~P~i~F 391 (528)
T PF03321_consen 340 PSEQPKTLLLHELEVGEE--YELVITTNSGLY--------------------------RYRIGDVVRVTGFYNQTPRIEF 391 (528)
T ss_dssp ----SSSEEGGG--TT-E--EEEEEESTTS-S--------------------------SEEECEEEEEEEEETTEEEEEE
T ss_pred ccCCCceecHHHhcCCCe--EEEEEeccccee--------------------------eeecCCEEEEeeccCCCcEEEE
Confidence 222 335554 666662 2221 189999999854 44 7999
Q ss_pred EeccCCccccCceeecchHHHHhhcCC
Q 006121 608 QGRADDTMNLGGIKALLLPLTFLSSPR 634 (660)
Q Consensus 608 ~GR~dd~iki~G~rv~~~eIE~~L~~~ 634 (660)
+||.+.++.+.|+++.-.+|+.+|.+.
T Consensus 392 ~~R~~~~l~l~gEkl~e~~v~~av~~~ 418 (528)
T PF03321_consen 392 VGRRGQVLSLFGEKLSEEQVQEAVARA 418 (528)
T ss_dssp EEETTEEE-SSS--EEHHHHHHHHHHH
T ss_pred eccCCceeecceeecCHHHHHHHHHHH
Confidence 999999999999999999999999765
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00073 Score=75.00 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=38.7
Q ss_pred EeeCceEEEec----CceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 591 y~TGDl~~~~~----dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
|+.||.++... --.|.|+||.+.++.+.|+++.-.+++.+|.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 89999999854 24799999999999999999999999999876
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.006 Score=67.32 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=37.8
Q ss_pred EeeCceEEEe----cCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 591 RRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 591 y~TGDl~~~~----~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
||.||+++.. .--.|.|++|.+.+..+.|.+..-.++..++.+
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ 463 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence 8999999873 446799999999999999999999999888865
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0028 Score=69.75 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=37.8
Q ss_pred EeeCceEEEe----cCceEEEEeccCCccccCceeecchHHHHhhcCC
Q 006121 591 RRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPR 634 (660)
Q Consensus 591 y~TGDl~~~~----~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~ 634 (660)
||.||+++.. ..-.|.|++|.+.+..+.|.+..-.++..++.+.
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 8999999874 3457999999999999999999999998887643
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.042 Score=42.98 Aligned_cols=33 Identities=3% Similarity=-0.082 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 626 PLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 626 eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
|||++|.+||+|.+|+|+...+.. +..+++|+.
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv 34 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVV 34 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEE
Confidence 899999999999999999987654 567888874
|
... |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.43 Score=50.60 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=69.8
Q ss_pred ceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCH--HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeE
Q 006121 207 VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV--RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283 (660)
Q Consensus 207 ~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~--~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~ 283 (660)
.--+|..++...+..+|+.|... ..+||+|.++..-+. .-+...+|+.++|+.++|+.+ -.-++...++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcE
Confidence 34589999999999999999999 999999999877211 116678999999999999988 34567788999999999
Q ss_pred EEeecce
Q 006121 284 IFTQDFI 290 (660)
Q Consensus 284 il~~~~~ 290 (660)
|.+..++
T Consensus 186 I~~tps~ 192 (438)
T COG1541 186 IAATPSY 192 (438)
T ss_pred EEEChHH
Confidence 9999864
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=81.51 E-value=3 Score=34.47 Aligned_cols=35 Identities=11% Similarity=-0.082 Sum_probs=24.6
Q ss_pred ceeecchHHHHhhcCCCCce-eeEEEEEeecCccee
Q 006121 619 GIKALLLPLTFLSSPRSSFK-CLHIYAWLYFHKLEL 653 (660)
Q Consensus 619 G~rv~~~eIE~~L~~~~~V~-~a~vv~~~~~~~~~l 653 (660)
|.+|+|..||++|.++|++. +..++........+|
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l 36 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDEL 36 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEE
Confidence 78999999999999999998 444444434333333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 660 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 4e-31 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 4e-31 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 4e-31 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 4e-31 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 4e-31 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 3e-30 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 5e-30 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 9e-17 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 1e-07 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-07 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 5e-06 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 3e-04 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 5e-04 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 5e-39
Identities = 92/468 (19%), Positives = 156/468 (33%), Gaps = 59/468 (12%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
P ++ N A L + + T A + TY EL E+ A+AL
Sbjct: 17 EAPPALFNFAA--YLFRLNETRAGKT-AYIDDTGS--------TTYGELEERARRFASAL 65
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
T+ + I + M TV + +L + AG V V + L S A+ +
Sbjct: 66 RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
++ ++ L +A L P +++ + +
Sbjct: 126 ASGALV------QNVTQALESAEHDGCQLIVSQPRESEP--RLAPLFEELIDA-----AA 172
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWP 403
D + L+SSG+TG+PK T +++ TAE +A + + DV
Sbjct: 173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSA 231
Query: 404 TNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462
L + G L GAT L P + + + TV VP+L +
Sbjct: 232 AKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS 291
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGSL 518
L IR S GE ++ + + I++ G TE+ ++ +
Sbjct: 292 PNLPARADVAIRICTSAGEALPR--EIG---ERFTAHFGCEILDGIGSTEMLHIFL-SNR 345
Query: 519 LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNAD 573
+G + + DE G PD + VG++ +Y N +
Sbjct: 346 AGAVEYGTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVMYWN------NRE 397
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
F G R GD R G + GR+DD + + G
Sbjct: 398 KSRATFLG-----EWI--RSGDKYCRLPNGCYVYAGRSDDMLKVSGQY 438
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 6e-36
Identities = 90/470 (19%), Positives = 155/470 (32%), Gaps = 78/470 (16%)
Query: 173 LNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM 229
N A L K + A+ W + E ++EL E AN L
Sbjct: 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELM---WNFRELSENSQQAANVLSGA 93
Query: 230 F--SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
+GD +A+ +P ++ L I AG + + + +I RL++SKAK I
Sbjct: 94 CGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAG 153
Query: 288 DFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343
D + +V A L+ +L V + L++K L+
Sbjct: 154 D---------EVIQEVDTVASECPSLRIKLL------VSEKSCDGWLNFKKLLNEA---- 194
Query: 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403
+ V I F+SGT+G PK + S L+ D+
Sbjct: 195 -STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI 253
Query: 404 TNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPS----LVK 457
++ GW++ + L + GA ++ + K + + + P L++
Sbjct: 254 SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313
Query: 458 AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAY 513
L + +++ + GE+ + + W I ES G TE +
Sbjct: 314 QD-----LSSYKFPHLQNCVTVGESLL--PETL---ENWRAQTGLDIRESYGQTE-TGLT 362
Query: 514 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYL 563
S G TA + I+D+ G P G+ +G+F Y+
Sbjct: 363 CMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSGYV 420
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
D+ + + GD + GY GRADD
Sbjct: 421 DNPDKTAANIRGDFWLL-------------GDRGIKDEDGYFQFMGRADD 457
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-34
Identities = 94/523 (17%), Positives = 169/523 (32%), Gaps = 80/523 (15%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDRTDKSKHGGTWLPGSVLNIAEC 178
H + + K ++ + F + + + L N A
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMTSLLSQFVSKTD--FESYEDFQENFKILVPENFNFAYD 60
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
+ + R +A++W +D +E T+K+L+ AN KGD +
Sbjct: 61 VV--DVYARDSPEKLAMIWCDDYGNEKIF---TFKDLKYYSDKAANFFVKHGIGKGDYVM 115
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
+ + L + G + V R+I R+ + K I
Sbjct: 116 LTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA----EDDVP 171
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL-SSVDYHPRPNYYSPVYNPVD 356
+ +P VG + E + ++ L S RP D
Sbjct: 172 EQVDEAHAECG----DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVST-KNED 226
Query: 357 AVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-PTNLGWVMGP 412
+ + FSSGT G PK + L I TA+ W +++ ++ + + GW
Sbjct: 227 ICL-VYFSSGTAGFPKMVEHDNTYPLGHIL-TAKYW--QNVEDDGLH-YTVADSGWGKCV 281
Query: 413 V-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLE 466
L+ ++ G + +Y E ++ + GVT P L+K L
Sbjct: 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----LS 336
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTE--LSSAYIQGSLLQ 520
+++ ++ GE N +++ + ++E G TE ++ A +
Sbjct: 337 HYNFSTLKYAVVAGEPLN--PEVF---NRFLEFTGIKLMEGFGQTETVVTIATFPWMEPK 391
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYLGASDRLL 570
P G+ T + ++D G + GE VGLF Y +R
Sbjct: 392 P---GSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613
H+ Y GD+ GY+ GRADD
Sbjct: 447 ETWHDGYYHT-------------GDMAWMDEDGYLWFVGRADD 476
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 138/579 (23%), Positives = 217/579 (37%), Gaps = 131/579 (22%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGG 165
+ R +P +++ ++ P+ +W K + + + + + +
Sbjct: 11 ANIADRCLINPEQYETKYKQ-SINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSI 67
Query: 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANA 225
W LN+A CL H ++ + AI+W D +S ++Y+EL V AN
Sbjct: 68 KWYEDGTLNLAANCL--DRHLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANT 123
Query: 226 LDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATR 275
L + KGD +AI MPM A + LA +I G F+ +A
Sbjct: 124 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG---------FSPEAVAGC 174
Query: 276 LRVSKAKGIFTQDFILRGGRKFPLYSKV-----LGAAPL--KAIVLPAIGNDVG-IPLRE 327
+ S ++ + T D +R GR PL V IVL G+D+ R
Sbjct: 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR- 233
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W+D + + P ++A + IL++SG+TG+PK + T T
Sbjct: 234 -DLWWRDLIEKA-----SPEHQPE--AMNAEDPLFILYTSGSTGKPKGVLHT-------T 278
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLE 434
G +A D GD+Y W T ++GWV G +L+ GAT +++G P
Sbjct: 279 G-GYLVYAATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 435 RSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNV 485
+ + V V +L T P+ ++A EG + +R S GE N
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMA----EGDKAIEGTDRSSLRILGSVGEPIN- 391
Query: 486 DDDLWLSSKAWYNAIIESCGGTELSSAYI-----Q----GSLLQPQAFGAFSTATMTAGL 536
+ W WY I G + Q G ++ P GA +A
Sbjct: 392 -PEAWE----WYWKKI---GK---EKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATR 439
Query: 537 -------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFR 580
++D G P G L +D R L DHE + YF
Sbjct: 440 PFFGVQPALVDNEGHPQEG-----ATEG----NLVITDSWPGQARTLFGDHERFEQTYF- 489
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+K M GD +R GY + GR DD +N+ G
Sbjct: 490 --STFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 82/418 (19%)
Query: 126 KFTVEHPEAYW-EIALKEIS--VVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
K ++E P ++ A + ++ F + S W LN C+
Sbjct: 31 KESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV-- 88
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAIDM 240
H K N AI++ D + +TYKEL E+V VA L KGD +A+ M
Sbjct: 89 DRHALKTPNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYM 146
Query: 241 PMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
PM A+I LA ++ AG F++ + R+ +K + T D
Sbjct: 147 PMVPEAIITLLAISRIGAIHSVVFAG---------FSSNSLRDRINDGDSKVVITTDESN 197
Query: 292 RGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRP 345
RGG+ V L P +V N + +DL W
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLDWATEKKKY-----K 251
Query: 346 NYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DL 394
YY PVD+ + +L++SG+TG PK + + TA G A + D
Sbjct: 252 TYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHS-------TA-GYLLGALLTMRYTFDT 301
Query: 395 KVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVL 449
DV+ + ++GW+ G +++ L G +++G+P ++ ++ + + VT
Sbjct: 302 HQEDVF-FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQF 360
Query: 450 GTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII 501
P+ ++ + G + + +R S GE ++W WY+ I
Sbjct: 361 YVAPTALRLLKR----AGDSYIENHSLKSLRCLGSVGEPIA--AEVWE----WYSEKI 408
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 9e-26
Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 25/279 (8%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y E E+ + AL IA+ I +A + G V + +
Sbjct: 53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYT 112
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ L +SK +F+ KV+ + + D
Sbjct: 113 LRELVHSLGISKPTIVFSSK---------KGLDKVITVQKTVTTIKTIVILD-SKVDYRG 162
Query: 329 DLSWKDFLS--SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIR 383
F+ + ++ + + + V I+ SSG+TG PK + T ++
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS 222
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGK 439
+ + G G + G + + L + +F K
Sbjct: 223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM-----LTKFDEETFLK 277
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+QD T + VP+L + L D + + AS
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 35/284 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY E E + +A A+ + I + +++ + L + G V D +
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGI 323
RE+ + +S+ +F K+L K I++ + + G
Sbjct: 111 ERELLNSMNISQPTVVFVSK---------KGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161
Query: 324 PLREQDLSWKDFLSSVD--YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--- 378
S F++S ++ ++ + I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215
Query: 379 LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER--- 435
+ + G + G + L + R
Sbjct: 216 CVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL-----MYRFEE 270
Query: 436 -SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
F + +QD + VP+L + + ++ D + + AS
Sbjct: 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-24
Identities = 49/299 (16%), Positives = 103/299 (34%), Gaps = 40/299 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
AI+ E + M + E+ E +A+ + KG+ + + +P ++ V+
Sbjct: 34 EKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ V I + + E+ L S+A + + + VL +
Sbjct: 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGV 147
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
+ + + + S + + S ++ + NP + V I ++ GTTG
Sbjct: 148 ERVFVVG----------GEVNSLSEVMDS----GSEDFENVKVNPEEDVALIPYTGGTTG 193
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATLALY 428
PK + T + + L D ++G + +F S L +
Sbjct: 194 MPKGVMLTHFNLAANALQLAVATGLSHMDT---------IVGCMPMFHSAEFGLVNLMVT 244
Query: 429 QGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAS 478
G+ + + ++ T VP + NT + DW+ ++ FA+
Sbjct: 245 VGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFAT 303
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 55/277 (19%), Positives = 90/277 (32%), Gaps = 42/277 (15%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI +Y+EL + +A + + D + + +P +
Sbjct: 42 IAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK 310
A+ G + V S + EI ++A D G L +V P LK
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD-AYSGFDYRSLARQVQSKLPTLK 152
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
I++ G E+ L +D + P V + S G+TG
Sbjct: 153 NIIV------AGEA--EEFLPLEDLHTEPVKLPEVKS--------SDVAFLQLSGGSTGL 196
Query: 371 PKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGA 423
K IP T + S++ + E L VY N V+ G
Sbjct: 197 SKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGG 251
Query: 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
+ L SP + +F ++ VT+ VP L W
Sbjct: 252 RVVLSPSPSP-DDAF-PLIEREKVTITALVPPLAMVW 286
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 46/269 (17%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ +A + ++ D + + +P V+ +LA G + F
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S K I T+ K+ +V+ I ++ +P+ E
Sbjct: 149 PAEIAKQAKASNTKLIITEA---------RYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-------S 381
L + + S V D VV + +SSGTTG PK + L+
Sbjct: 200 CLRFTELTQSTT--EASEVIDSVEISPDDVVALPYSSGTTGLPKGV---MLTHKGLVTSV 254
Query: 382 IRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFLNGATLALYQGSPL--- 433
+ ++ DV L + +S + L G+ +
Sbjct: 255 AQQVDGENPNLYFHSDDVI-----LCVLPMFHIYA----LNSIMLC---GLRVGAAILIM 302
Query: 434 ----ERSFGKFVQDAGVTVLGTVPSLVKA 458
+ +Q VTV VP +V A
Sbjct: 303 PKFEINLLLELIQRCKVTVAPMVPPIVLA 331
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 58/289 (20%), Positives = 95/289 (32%), Gaps = 41/289 (14%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI+ E + ++Y EL +A L KGD + +P I++
Sbjct: 47 LAIICGERQ--------LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
A++ AG VV++ S E+ ++ + K + + ++S L
Sbjct: 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR-------QHEVFSNNQFIDSLHD 151
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
V + + + + D D++ + P + P D V S G+TG P
Sbjct: 152 -VNLSPEIILMLNHQATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTP 206
Query: 372 KAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGAT 424
K IP T S+R +AE L N G
Sbjct: 207 KLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGC 261
Query: 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472
+ + P F +Q V + VPS V W LE K
Sbjct: 262 VVMAPNPEP-LNCF-SIIQRHQVNMASLVPSAVIMW-----LEKAAQYK 303
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-22
Identities = 53/284 (18%), Positives = 89/284 (31%), Gaps = 38/284 (13%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
R +++A++ E + ++Y+EL + +A +L G+ + +
Sbjct: 34 TRHAASDSIAVIDGERQ--------LSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
I + A++ G V S E+ + + + L+S
Sbjct: 86 AELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR-------QHALFSGD 138
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
+I + D + ++++ +P P D V
Sbjct: 139 DFLNTFVT-EHSSIRVVQLLN----DSGEHNLQDAINHPAEDFTATPS--PADEVAYFQL 191
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILF 416
S GTTG PK IP T S+R + E Y N P L
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSS-PGSL- 246
Query: 417 SSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
FL G T+ L S F ++ V V VP V W
Sbjct: 247 GVFLAGGTVVLAADPSA-TLCF-PLIEKHQVNVTALVPPAVSLW 288
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-21
Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 60/337 (17%)
Query: 160 KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQV 219
+SK ++P + L + L + + ++ + + ++ TY ++
Sbjct: 10 RSKLPDIYIPKN-LPLHSYVL---ENLSNHSSKPCLI------NGANGDVYTYADVELTA 59
Query: 220 MLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA+ L+ + +GD I + +P + V+ +L G ++ + E+A +
Sbjct: 60 RRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKA 119
Query: 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDF 335
S+AK + TQ Y KV A +K + + + + L + +
Sbjct: 120 SRAKLLITQA---------CYYEKVKDFARESDVKVMCVDSAPDGC--------LHFSEL 162
Query: 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWA-H 391
+ + +P D V + +SSGTTG PK + T ++S+ +G +
Sbjct: 163 TQADENEAPQ----VDISPDDVVA-LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPN 217
Query: 392 IDLKVGDVYCWPTNLGW-----VMG-PVILFSSFLNGATLALYQGSPLER----SFGKFV 441
+ DV L + I+ GA + + + + S +
Sbjct: 218 LYFHSEDVI-----LCVLPMFHIYALNSIMLCGLRVGAPILI-----MPKFEIGSLLGLI 267
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+ V++ VP ++ + + L+ D + +R S
Sbjct: 268 EKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS 304
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 3e-18
Identities = 53/305 (17%), Positives = 93/305 (30%), Gaps = 51/305 (16%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ + + +AI ++Y EL + VAN L GD +A +
Sbjct: 11 DKLDDPHKLAIETAAGDK-------ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
V A+++YLA + AG V + + ++ E+ + ++ K + K + +
Sbjct: 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP------SKRDGIAAI 117
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
L G S D + D + IL+
Sbjct: 118 AAKVGATVETLGPDG----------RGSLTDAAAGASEAFATIDRGA-----DDLAAILY 162
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGPVILF 416
+SGTTG K + S+ + W DV + G +
Sbjct: 163 TSGTTGRSKGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLFVA---SN 216
Query: 417 SSFLNGATLALYQGSPLERSF--GKFVQD-AGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473
+ ++ F K + A TVL VP+ + L +
Sbjct: 217 VTLFARGSMI------FLPKFDPDKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHM 270
Query: 474 RSFAS 478
R F S
Sbjct: 271 RLFIS 275
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 4e-18
Identities = 64/315 (20%), Positives = 102/315 (32%), Gaps = 48/315 (15%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI + A V D MTY ++ A+ L + +
Sbjct: 16 KNIGW---MLRQRATVSPRLQAYVEPST--DVR----MTYAQMNALANRCADVLTALGIA 66
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGD +A+ MP +V ++ G V V I AA E++ L S +K +
Sbjct: 67 KGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
P+ + A V IG D S + L S
Sbjct: 127 ------PVIDAIRAQADPPGTVTDWIGAD----------SLAERLRSAAADEPAVECGG- 169
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
D + I+++SGTTG PK + T S + + ID++ D +
Sbjct: 170 ----DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLL-------LPL 218
Query: 412 PVILFSSF-LNGATLALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTN 463
P +F L + +G F + + V + G VP+++ R
Sbjct: 219 P--MFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP 276
Query: 464 CLEGLDWTKIRSFAS 478
LD R F +
Sbjct: 277 EFAELDAPDFRYFIT 291
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 1e-17
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 23/263 (8%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLA 252
+AI ++ TY+ L + L+A L + + + + +++++I+ A
Sbjct: 18 IAITDGQES--------YTYQNLYCEASLLAKRL--KAYQQSRVGLYIDNSIQSIILIHA 67
Query: 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI 312
LA + I E+ ++R + IF PL + L I
Sbjct: 68 CWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL---------PLELRGFQIVSLDDI 118
Query: 313 VLPAIGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
G+ + + +V P+ +D + +I+F+SGTTG
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQ 178
Query: 372 KAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430
KA+P T + +A G + + + + G +L + + G T+ +
Sbjct: 179 KAVPQTF-RNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237
Query: 431 SPLERSFGKFVQDAGVTVLGTVP 453
E+ +++ +T + VP
Sbjct: 238 FNAEQIL-TMIKNERITHISLVP 259
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 5e-17
Identities = 37/287 (12%), Positives = 81/287 (28%), Gaps = 42/287 (14%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
+A+ + + + A + R +T+++ + +A+ L
Sbjct: 6 FTLAD---VYRRNAALFPDRTAFMVDGVR--------LTHRDYLARAERLASGLLRDGVH 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
GD +AI + + A+ L G +++ + A EIA L +
Sbjct: 55 TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ + VL + + + + F P
Sbjct: 115 ------DIVAGVLPSLGGVKKA---------YAIGDGSGPFAPFKDLASDTPFS----AP 155
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
I+ ++ G P+ +Q + + + L DV L V G
Sbjct: 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG 215
Query: 412 PVILFSSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVP 453
++ + G + F + ++ VTV+
Sbjct: 216 LGLMLTLQQAGGASV------IAAKFDPAQAARDIEAHKVTVMAEFA 256
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 42/255 (16%), Positives = 74/255 (29%), Gaps = 63/255 (24%)
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
L + A+ + E +TY EL A + +A+
Sbjct: 28 LSPAPTGAPADRPALRFGERS--------LTYAELAAAAGATAGRI----GGAGRVAVWA 75
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPL 299
+ + +A +LAG V + +E+A L S + D L
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPA----- 130
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
LGA + + A G + D +
Sbjct: 131 ----LGALERVDVDVRARGAVPEDGADDGDPAL--------------------------- 159
Query: 360 NILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGP 412
++++SGTTG PK + +++ A+ W DV L G V+G
Sbjct: 160 -VVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLG- 214
Query: 413 VILFSSFLNGATLAL 427
+ G ++
Sbjct: 215 --ILGPLRRGGSVRH 227
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 7e-14
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 37/252 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + + + + I+ + +
Sbjct: 90 SAELAELIKRGEMTAAVIAV-------GRQVADAIFQSGSGARIIFLG-----DLVRDGE 137
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S+ + P I ++SGTTG PKA Q ++
Sbjct: 138 PYSYGPPIEDPQREP------------AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 389 WAHIDLKVG--DVYCWPTNL----GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFV 441
+ L+ G +V L G+ L ++ T + + P++ + V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRPVD--ALQLV 240
Query: 442 QDAGVTVLGTVP 453
Q VT L P
Sbjct: 241 QQEQVTSLFATP 252
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-11
Identities = 72/471 (15%), Positives = 138/471 (29%), Gaps = 155/471 (32%)
Query: 10 VEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIW------RELVARKVLKPWHPHGL 63
V+D+ K L EE D I+ + S L R W E+V + V +
Sbjct: 38 VQDMPKSILS---KEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQKFV------EEV 86
Query: 64 HQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRL 123
++ Y + + + P S+ + R Y D ++
Sbjct: 87 LRINYKFLMSPIKTEQRQP------SMMTRMYIEQRD-----------RLYNDN----QV 125
Query: 124 FQKFTVEHPEAYWEI--ALKEISVVFREAPKCILDRTDKSKHG--G---TWLPGSV---- 172
F K+ V + Y ++ AL E+ R A ++ G G TW+ V
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL----RPAKNVLI-------DGVLGSGKTWVALDVCLSY 174
Query: 173 ------------LNIAECC--------------LLPSNHRRKEDNTVAIVWREDRCDESA 206
LN+ C + N + D++ I R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 207 VNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP----MTVRAVIIYLAIILAGYVVVS 262
L+ K +LV L + + A ++ +T R
Sbjct: 235 RRLLKSKPYEN-CLLV---LLNVQNAKAWNAFNLSCKILLTTRF--------------KQ 276
Query: 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA----PLKAI-VLPAI 317
+ D +A T + + T D + L K L P + + P
Sbjct: 277 VTDFLSA-ATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQDLPREVLTTNPRR 329
Query: 318 GNDVGIPLREQDLSWKDFL------------SSVDYHPRPNYYSPVYN-----PVDA--- 357
+ + +R+ +W ++ SS++ P Y +++ P A
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIP 388
Query: 358 --VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----------HIDLKV 396
++++++ + + E +++LKV
Sbjct: 389 TILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKV 437
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 50/261 (19%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY E+ ++ + L + GD +A R + Y A+ G V+ + +
Sbjct: 48 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 107
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLR 326
+EIA L ++ K + + + PL + G ++ V +
Sbjct: 108 PKEIAYILNHAEDKVLLFDPNLL-------PLVEAIRGELKTVQHFV------VMDEKAP 154
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSI 382
E L++++ L R P A + +++GTTG PK + ++ L S+
Sbjct: 155 EGYLAYEEALGEEADPVRV--------PERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
Query: 383 R-CTAEGWAHIDLKVGDVYCWPT-----NLGWVMGPVILFSSFLNGATLAL----YQGSP 432
+G A L DV N W + P +++ L GA L +
Sbjct: 207 AASLVDGTA---LSEKDVVLPVVPMFHVN-AWCL-P---YAATLVGAKQVLPGPRLDPAS 258
Query: 433 LERSFGKFVQDAGVTVLGTVP 453
L GVT VP
Sbjct: 259 LVE----LFDGEGVTFTAGVP 275
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 32/208 (15%)
Query: 191 NTVAIVWREDRCD-ESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVII 249
+ A + + D + +T+ +L + + VA L S GD + I P + V+
Sbjct: 39 HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYVVA 98
Query: 250 YLAIILAGYVVVSIA--DSFAARE-IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 306
+L + AG + V ++ E + L S I T + + ++ G
Sbjct: 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH--VARRPGE 156
Query: 307 APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+P I + + D + + ++SG
Sbjct: 157 SPPSIIEVDLLDLDAP-------------NGYTFKEDEY----------PSTAYLQYTSG 193
Query: 367 TTGEPKAIPWTQ---LSSIRCTAEGWAH 391
+T P + + + G+
Sbjct: 194 STRTPAGVVMSHQNVRVNFEQLMSGYFA 221
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 30/209 (14%), Positives = 71/209 (33%), Gaps = 37/209 (17%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N + + +E+ MTY++L + +A L GD + + + +
Sbjct: 26 NKKSCTFLNKELEET----MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81
Query: 250 YLAIILAGYVVVSIA----DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
+L + AG + V I + + + SK + ++ + L
Sbjct: 82 FLGCLYAGCIAVPIYPPAQEKLLDK-AQRIVTNSKPVIVLMIADHIKK-----FTADELN 135
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
P K + +PAI + S++ + ++ + + + ++S
Sbjct: 136 TNP-KFLKIPAIALE-----------------SIELNRSSSWQPTSIKS-NDIAFLQYTS 176
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAH 391
G+T PK + + L ++ +
Sbjct: 177 GSTMHPKGVMVSHHNLLDNLNKIFTSFHM 205
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 660 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 100.0 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.77 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.73 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.69 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.63 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 98.49 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 98.41 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 98.3 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 98.22 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 97.03 | |
| 1q9j_A | 422 | PAPA5, polyketide synthase associated protein 5; c | 92.79 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 88.27 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 87.29 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 86.28 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 81.83 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 81.82 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 81.16 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-87 Score=815.92 Aligned_cols=577 Identities=16% Similarity=0.129 Sum_probs=466.0
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC---------Ccc
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP---------PLY 85 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~---------~~~ 85 (660)
+.++++++.+|.++|+++++...++ +||++||++ |++.++ +.|+||+||+++|.+... ...
T Consensus 304 lr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~--------~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~ 374 (1304)
T 2vsq_A 304 RRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD--------QPKLIDHIIVFENYPLQDAKNEESSENGFD 374 (1304)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS--------CSSSCCCEEEECSSCHHHHSCCCHHHHSEE
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC--------CCcccceeEEEeecccccccccccccCCce
Confidence 3455567778999999999988877 999999999 999874 235699999998754211 010
Q ss_pred cCCC-hhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCC
Q 006121 86 WFPS-LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (660)
Q Consensus 86 ~~~~-~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (660)
..+. ....++|||++.+.. ++++.+.+ |++ ++|++.+++++.++|.++|+++..+++.+..++ ++..+..
T Consensus 375 ~~~~~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~ 448 (1304)
T 2vsq_A 375 MVDVHVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDRERE 448 (1304)
T ss_dssp EEEEEECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHH
T ss_pred eEeeecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHHHHH
Confidence 0000 023578898887643 56788888 999 999999999999999999999987777666553 3333322
Q ss_pred CCCCCcCCCCccchhhhccc--ccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEE
Q 006121 162 KHGGTWLPGSVLNIAECCLL--PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (660)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~--~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i 238 (660)
..+..|+.+...... .+++ +..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+|
T Consensus 449 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i 519 (1304)
T 2vsq_A 449 FLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVAL 519 (1304)
T ss_dssp HHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HHHHhcCCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEE
Confidence 234557655433221 2232 2346689999999999887 999999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCC
Q 006121 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (660)
Q Consensus 239 ~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 318 (660)
+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++ .....+++..
T Consensus 520 ~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~~~~-- 589 (1304)
T 2vsq_A 520 YTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLFIDD-- 589 (1304)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEESSC--
T ss_pred EeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEEecc--
Confidence 999999999999999999999999999999999999999999999999875432111110 0011111110
Q ss_pred CCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCC
Q 006121 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (660)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 398 (660)
...... . ...+.....|+++|||+|||||||+||||+++|+++.+. .+....+++++++
T Consensus 590 -------------~~~~~~-~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d 648 (1304)
T 2vsq_A 590 -------------QTRFEE-Q------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQD 648 (1304)
T ss_dssp -------------GGGGGS-C------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTC
T ss_pred -------------cccccc-c------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCC
Confidence 000000 0 011223456899999999999999999999999999877 5566778899999
Q ss_pred EEEEecCccccchhhHHHHhhhcCcEEEEecC--CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEE
Q 006121 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476 (660)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v 476 (660)
+++++++++||.+.+++|.+|++|+++++.+. ..++..+.+.|++++||+++++|++++.|.+.. ...+++||.+
T Consensus 649 ~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~ 725 (1304)
T 2vsq_A 649 TFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCI 725 (1304)
T ss_dssp EEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEE
T ss_pred EEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEE
Confidence 99999999999999999999999999999874 358899999999999999999999999998653 2236799999
Q ss_pred EeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcC---CCCcccccCcCCCCceEEEEcCCCCcCCCCCCce
Q 006121 477 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (660)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~gi 553 (660)
++|||++++++.+++.+.+++++++|.||+||++++++..... ......+||+|++|++++|+|++++++|.|++
T Consensus 726 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~-- 803 (1304)
T 2vsq_A 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV-- 803 (1304)
T ss_dssp EEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--
T ss_pred EEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--
Confidence 9999999999999988887778999999999999765543221 22345689999999999999999999999997
Q ss_pred eEEEE-----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHH
Q 006121 554 GEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLT 628 (660)
Q Consensus 554 Gel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE 628 (660)
||||| +.||++ ++++|+++|+.+|+.+|+|||||||+|||++||+|+|+||+|||||+||+||+|+|||
T Consensus 804 GEl~i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE 877 (1304)
T 2vsq_A 804 GELCISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIE 877 (1304)
T ss_dssp EEEEEEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHH
T ss_pred eEEEEeccccCccccC------CcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHH
Confidence 99999 456666 8889999999999988999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 629 FLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 629 ~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
++|.+||+|++|+|++..+.. +..|++|+.
T Consensus 878 ~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv 908 (1304)
T 2vsq_A 878 KQLQEYPGVKDAVVVADRHESGDASINAYLV 908 (1304)
T ss_dssp HHHHHSSSCCEEEEEEECCSSSCCEEEEEEE
T ss_pred HHHHhCCCCceEEEEEEecCCCCEEEEEEEe
Confidence 999999999999999876544 567999875
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-76 Score=668.87 Aligned_cols=526 Identities=21% Similarity=0.297 Sum_probs=419.9
Q ss_pred cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCC---C-CCCCCCCcCCCCccchhhhcccccCcCCCC
Q 006121 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (660)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~ 189 (660)
+...+.+|..+.+++++++..||..+.+.. +.|.+++.++++.. . ...+..+|+.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 444456678888999999999999998862 47899999988764 2 2233368999999999999988765 679
Q ss_pred CCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHH-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCC
Q 006121 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (660)
Q Consensus 190 pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~ 267 (660)
|+++|+++.+. +.+..+++||+||+++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234468999999999999999999 88 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc---CCC--cEEEEcCCCC-CCCCCCCCCCcchhhhhccCCC
Q 006121 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APL--KAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 268 p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+.+++.++++++++++||+++...+.++.++....+.+. .+. .++++..... ... .......+|+++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcCC
Confidence 999999999999999999998877666655544333322 222 3444433221 100 011234567776654321
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHH-HhhHhcCCCCCCEEEEecCccccchh-hHHHHhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l 419 (660)
..+.....+++++||+|||||||+||||+++|++++.... .....++++++|++++.++++|+.+. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876654 34456889999999999999999998 7789999
Q ss_pred hcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhh
Q 006121 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (660)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~ 494 (660)
++|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999987654 345678999999999999999999999987
Q ss_pred CC--CCceeccccccccccccccCCc--CCCCcccccCcCCCCceEEEEcC-CCCcCCC-CCCceeEEEE-e--ccccCC
Q 006121 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGL-F--PLYLGA 565 (660)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~-G~~giGel~v-~--~~y~~~ 565 (660)
++ .++++|.||+||++++++.... ..+.+.+++|+|++|++++|+|+ +|+++|. |+. |||+| + |++..+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc
Confidence 75 3789999999999875554432 23456789999999999999998 9999998 885 99999 3 233321
Q ss_pred cccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEE
Q 006121 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAW 645 (660)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~ 645 (660)
|+.+++.+.+.|... ..+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+..
T Consensus 486 --y~~~~~~~~~~~~~~----~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~ 559 (663)
T 1ry2_A 486 --IWKNHDRYLDTYLNP----YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 559 (663)
T ss_dssp --ETTCHHHHHHHHTSS----STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECC
T ss_pred --cccChHHHHHhhhcC----CCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEE
Confidence 222555565554321 12399999999999999999999999999999999999999999999999999999987
Q ss_pred eec-Ccceeeeecc
Q 006121 646 LYF-HKLELIFYFS 658 (660)
Q Consensus 646 ~~~-~~~~l~a~~~ 658 (660)
.+. .+..+++|+.
T Consensus 560 ~~~~~g~~~~a~Vv 573 (663)
T 1ry2_A 560 NDDLTGQAVAAFVV 573 (663)
T ss_dssp CCCTTSCCCEEEEE
T ss_pred ecCCCCeEEEEEEE
Confidence 654 3556888874
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-76 Score=669.38 Aligned_cols=518 Identities=23% Similarity=0.336 Sum_probs=416.1
Q ss_pred cHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCC-CCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEEe
Q 006121 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (660)
Q Consensus 120 ~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~ 198 (660)
+|..+.+.+++++..+|..+++. ..|.+++.+++..... ..+..+|+.++..|...+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 35677889999999999999885 5678888887754321 123558999999999988887765 678999999985
Q ss_pred cCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Q 006121 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (660)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~ 277 (660)
+. +.+..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|++|.++++++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123446899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeeEEEeecceeecCccccchhhHhc---cCC----CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCC
Q 006121 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (660)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (660)
++++++||+++...+.++.++....+.. ..+ ..++++...+..... ......+|++++..... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 9999999999987766665554433322 211 234444332211110 11234567777654322 1222
Q ss_pred ccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHH-HhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEe
Q 006121 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (660)
Q Consensus 351 ~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~ 428 (660)
....+++++||+|||||||+||||+++|++++.... .....++++++|++++.+|++|+.+. +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 345679999999999999999999999999876654 44556889999999999999999998 7789999999999999
Q ss_pred cCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhCC--CCcee
Q 006121 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (660)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (660)
++. +++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++.+++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 753 478999999999999999999999999987643 34467899999999999999999999988765 37899
Q ss_pred ccccccccccccccCCc-CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e--ccccCCccccc-Cccccc
Q 006121 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLL-NADHEE 576 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~--~~y~~~~~~~~-~~~~t~ 576 (660)
|.||+||++++++.... ..+...+++|+|++|++++|+|++|+++|.|+. |||+| + |+... +|+ +++.+.
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~---gY~~~~e~~~ 485 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQAR---TLFGDHERFE 485 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCC---EETTCHHHHH
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhh---hhcCCHHHHH
Confidence 99999999975554332 234566899999999999999999999999986 99999 3 23322 233 455554
Q ss_pred ccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccceeee
Q 006121 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLELIF 655 (660)
Q Consensus 577 ~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l~a 655 (660)
+.|.. ...+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+. .+..+++
T Consensus 486 ~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a 561 (652)
T 1pg4_A 486 QTYFS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561 (652)
T ss_dssp HHHHS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhh----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEE
Confidence 44422 123399999999999999999999999999999999999999999999999999999987765 4567888
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
|+.
T Consensus 562 ~Vv 564 (652)
T 1pg4_A 562 YVT 564 (652)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-75 Score=654.73 Aligned_cols=417 Identities=18% Similarity=0.155 Sum_probs=355.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++||+++++++|||+|+|++||||
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 5689999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
||.+|.+|+.++++++++++|++++......... ... .+.....
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~------------------~~~~~~~------ 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCV------------------PVRHLPA------ 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEE------------------EGGGCCC------
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCC------------cee------------------eeccCCc------
Confidence 9999999999999999999999765421100000 000 0111000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
.+.........++++|||+|||||||+||||+++|+++.+.+.+ ...+++++++++++.+|++|+.+++++|.+|+.|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 01111223346899999999999999999999999999887765 56678999999999999999999999999999999
Q ss_pred EEEEec-CCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 424 TLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 424 ~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
++++.+ ...++..++++|+++++|+++++|++++.|++.. ...+++||.+++|||+++++..+++.+.+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 999985 3568999999999999999999999999998753 345789999999999999999888888888899999
Q ss_pred cccccccccccccCCc---CCCCcccccCcCCCCceEEEEcCCCCc-CCCCCCceeEEEE-----eccccCCcccccCcc
Q 006121 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~-vp~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (660)
.||+||++++++.... .......++|+|++|++++|+|+++++ +|+|++ |||+| +.||++ +++
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~------~p~ 379 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRN------DAA 379 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETT------CHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCC------Chh
Confidence 9999999975443222 122345689999999999999999988 789997 99999 456665 788
Q ss_pred cccccccccccCCCc--eeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcc
Q 006121 574 HEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKL 651 (660)
Q Consensus 574 ~t~~~f~~~p~~~~~--r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~ 651 (660)
.|+++|..+|+ ++. |||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|++|+|+...+....
T Consensus 380 ~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~ 458 (620)
T 4dg8_A 380 RTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVK 458 (620)
T ss_dssp HHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEE
T ss_pred hhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCce
Confidence 99999999885 344 899999999999999999999999999999999999999999999999999999988877777
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
++++|+.
T Consensus 459 ~lv~~~~ 465 (620)
T 4dg8_A 459 QLLCAWT 465 (620)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7777754
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=622.29 Aligned_cols=442 Identities=15% Similarity=0.108 Sum_probs=352.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++|||
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 347899999999987422233445999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
||.+|.+++.+++++++++++|+++... +.+...........+++... ...+++++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVGG----------EVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEETC----------SSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeCC----------CCcCHHHHHhcCcc--
Confidence 9999999999999999999999997542 22223333333222222211 22345665554332
Q ss_pred CCCCCCCccCC-CCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcC
Q 006121 344 RPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (660)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 422 (660)
........ ++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122233 38999999999999999999999999999998888889999999999999999999987788999999
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCC--CCCccCccEEEeecCCCChhhHHHHHhh----CC
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW 496 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~gGe~l~~~~~~~~~~~----~~ 496 (660)
+++++.+ .+++..+++.|+++++|+++++|+++..|++..... ..++++||.+++|||++++++.+++.+. ++
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 678999999999999999999999999998754322 2568999999999999999999888876 33
Q ss_pred --CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCccc
Q 006121 497 --YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (660)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~ 568 (660)
.++++|.||+||++++++..........+++|+|+++++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~---- 399 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWK---- 399 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCC----
Confidence 37899999999999866655544445677999999999999999 89999999997 99999 346665
Q ss_pred ccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec
Q 006121 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF 648 (660)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~ 648 (660)
+++.|++.|..++ +|.|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.
T Consensus 400 --~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 400 --REKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDE 475 (549)
T ss_dssp --CTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC-
T ss_pred --ChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEcc
Confidence 7889999996544 477899999999999999999999999999999999999999999999999999999876554
Q ss_pred C-cceeeeecc
Q 006121 649 H-KLELIFYFS 658 (660)
Q Consensus 649 ~-~~~l~a~~~ 658 (660)
. +..+++|+.
T Consensus 476 ~~g~~~~a~vv 486 (549)
T 3g7s_A 476 EAGEVPKAFIV 486 (549)
T ss_dssp -----CEEEEE
T ss_pred ccCceEEEEEE
Confidence 3 445666653
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-71 Score=615.44 Aligned_cols=434 Identities=18% Similarity=0.195 Sum_probs=361.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 45789999999986321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|++.... +.+...........+.+... ..+...++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987542 12222222222233333211 1233455555543322
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH----hcCCCCCCEEEEecCccccchh-hHHHHh
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 418 (660)
..+.....++++|||+|||||||+||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233457899999999999999999999999999887765543 4568899999999999999998 457889
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCC
Q 006121 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (660)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (660)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++++.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 57889999999999999999999999999988766677899999999999999999999999998889
Q ss_pred ceeccccccccccccccCC----cCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCccc
Q 006121 499 AIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (660)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~ 568 (660)
+++|.||+||++++++... .......+++|+|++|++++|+| ++|+++|.|++ |||+| +.||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcC----
Confidence 9999999999986544321 12234567899999999999999 67999999997 99999 345655
Q ss_pred ccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec
Q 006121 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF 648 (660)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~ 648 (660)
+++.|++.|..+ +||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.
T Consensus 399 --~p~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 470 (536)
T 3ni2_A 399 --DPEATSRTIDKE------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE 470 (536)
T ss_dssp --CHHHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred --ChhHHHhhccCC------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecC
Confidence 788888888643 399999999999999999999999999999999999999999999999999999987765
Q ss_pred C-cceeeeecc
Q 006121 649 H-KLELIFYFS 658 (660)
Q Consensus 649 ~-~~~l~a~~~ 658 (660)
. +..+++|+.
T Consensus 471 ~~g~~~~a~vv 481 (536)
T 3ni2_A 471 DAGEVPVAFVV 481 (536)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCceeEEEEE
Confidence 4 455677764
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-70 Score=616.87 Aligned_cols=462 Identities=16% Similarity=0.124 Sum_probs=371.4
Q ss_pred CcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCH
Q 006121 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (660)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (660)
.|......|....+++.++ +++|+++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|+++|++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~~---g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~ 122 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDDY---GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY 122 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEESS---SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT
T ss_pred CCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcCC---CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 4666666777777776654 789999999985431 3346899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC---CcEEEEcCCCCCC
Q 006121 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDV 321 (660)
Q Consensus 245 ~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 321 (660)
++++++|||+|+|++++|++|.++.+++.++++++++++||++.... ..+.........+ ...+.+...
T Consensus 123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999999987521 0011222222222 233333211
Q ss_pred CCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEE
Q 006121 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (660)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l 401 (660)
...+..++.+.+...... ...........++++|||+|||||||+||||+++|++++..+......+++.++++++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHY 270 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEE
T ss_pred ---cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEE
Confidence 112345566655443320 0001111245789999999999999999999999999888777666667889999999
Q ss_pred EecCccccchhhH-HHHhhhcCcEEEEec-CCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEee
Q 006121 402 WPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (660)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~l~~G~~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (660)
+.++++|+.+.+. ++.+++.|+++++.+ ..+++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~g 349 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVA 349 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEEC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEc
Confidence 9999999998875 788999999999985 4678999999999999999999999999998763 345678999999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~ 559 (660)
||++++++.+++.+.+ +++++|.||+||+++.++.. .......+++|+|++|++++|+|++|+++|+|+. |||+|.
T Consensus 350 Ge~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~ 425 (580)
T 3etc_A 350 GEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATF-PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVIN 425 (580)
T ss_dssp SSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECC-TTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEE
T ss_pred cCCCCHHHHHHHHHHh-CCeEecccccccccceeecC-CCCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEe
Confidence 9999999999998776 48899999999998754433 3334567899999999999999999999999997 999994
Q ss_pred ------ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 560 ------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 560 ------~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
++.+.+ |+.+++.|++.|.. +||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+
T Consensus 426 ~~~g~~~~~~~g--Y~~~p~~t~~~f~~-------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 426 TMEGKPVGLFVH--YGKDPERTEETWHD-------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp CTTCCCTTCCCE--ETTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred cCCCCCCeeecc--ccCCHhHHHhhcCC-------CEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 222221 22377889888852 399999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecC-cceeeeecc
Q 006121 634 RSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
||+|.+|+|+...+.. +..+++|+.
T Consensus 497 ~p~V~~a~Vvg~~~~~~g~~~~a~vv 522 (580)
T 3etc_A 497 HPAVLECAITGVPDPVRGQVIKATIV 522 (580)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CCCeeeEEEEeeeccCCCcEEEEEEE
Confidence 9999999999877664 445666653
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-70 Score=620.50 Aligned_cols=430 Identities=17% Similarity=0.175 Sum_probs=353.4
Q ss_pred CCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCC
Q 006121 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (660)
Q Consensus 190 pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p 268 (660)
||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++||+++++++|||+|+|++|||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999887 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCC
Q 006121 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (660)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (660)
.+++.++++++++++++++....... .......+....+. ..+.+.... ....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLNDS---------GEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETCC---------STTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeecccc---------cccchhhhhccccc-----c
Confidence 99999999999999999997532100 00111222222222 222221110 11223333332221 1
Q ss_pred CCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh--hHHHHhhhcCcEE
Q 006121 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (660)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~l~~G~~l 425 (660)
.......++++|||+|||||||+||||+++|+++.+.+.+....+++++++++++.+|++|.+++ +++|.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22234567999999999999999999999999999999998889999999999999998776655 5799999999999
Q ss_pred EEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++.+ ..++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++.+.+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9987 46788999999999999999999999998764322 233689999999999999999999998876 4899999
Q ss_pred ccccccccccccCCcCCCCcccccCcCC-CCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (660)
||+||+++.++...........++|+|+ ++++++|+|++++++|.|++ |||+| +.||++ +++.|++
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~------~p~~t~~ 405 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 405 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTT------CHHHHHH
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcC------Chhhhhh
Confidence 9999998754433222222345899998 78899999999999999997 99999 456665 7889999
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
+|..++ ||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|++|+|+...+.. +..+++|
T Consensus 406 ~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~ 479 (617)
T 3rg2_A 406 AFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479 (617)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred ccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEE
Confidence 997654 999999999999999999999999999999999999999999999999999999877654 5677887
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 480 vv 481 (617)
T 3rg2_A 480 LV 481 (617)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-71 Score=621.00 Aligned_cols=420 Identities=18% Similarity=0.181 Sum_probs=312.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 4478999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|++...... ......+..... ....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~----- 201 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVEDE----------------AASD----- 201 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeecc----------------cccc-----
Confidence 999999999999999999999998753211 111111110000 0000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
.+.........++++|||+|||||||+||||+++|+++.+.+.+ ...+++++++++++.+|++|+.+.+.++.+++.|+
T Consensus 202 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 202 APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 00111223457899999999999999999999999999877655 45668899999999999999999889999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
++++.+. ..++..+++.|+++++|++.++|++++.|++... .++++||.+++|||+++.++.+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999874 4688999999999999999999999999987642 35789999999999999999999998888899999
Q ss_pred cccccccccccccCCc---CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
.||+||++++.+.... .......++|+|++|++++|+|++++++|.|+. |||+| + .||++ +++.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~GY~~------~~~~ 429 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHGYVS------RPAL 429 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHH
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchhcCC------Cchh
Confidence 9999999875443222 122345679999999999999999999999996 99999 4 45555 7889
Q ss_pred ccccccccccC--CCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cc
Q 006121 575 EEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KL 651 (660)
Q Consensus 575 t~~~f~~~p~~--~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~ 651 (660)
|+++|..+|+. ++.+||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. +.
T Consensus 430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 509 (570)
T 4gr5_A 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDK 509 (570)
T ss_dssp HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred hhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCe
Confidence 99999988773 5678999999999999999999999999999999999999999999999999999998765443 44
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
.+++|+.
T Consensus 510 ~~~a~vv 516 (570)
T 4gr5_A 510 QLVAYVV 516 (570)
T ss_dssp -------
T ss_pred EEEEEEE
Confidence 5666653
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-70 Score=614.12 Aligned_cols=417 Identities=18% Similarity=0.176 Sum_probs=347.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 3478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+|.++.+++.+++++++++++|++..... ...... .....+.. . .+. . ...
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~--~-----------~~~---~-~~~ 172 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEE--D-----------TIK---I-REG 172 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCC--S-----------TTT---T-SCC
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecc--h-----------hhc---c-ccC
Confidence 99999999999999999999999875321 111111 11111110 0 000 0 000
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.
T Consensus 173 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 247 (563)
T 1amu_A 173 -----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLT 247 (563)
T ss_dssp -----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred -----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHC
Confidence 011123467899999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 422 G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
|+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++||+++++++.+++.+. ++
T Consensus 248 G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~ 318 (563)
T 1amu_A 248 GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VT 318 (563)
T ss_dssp TCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SE
T ss_pred CCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---Ce
Confidence 9999998642 4788999999999999999999999877532 36899999999999999999888764 68
Q ss_pred eeccccccccccccccCCcC--CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCc
Q 006121 500 IIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNA 572 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~ 572 (660)
++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|+. |||+| + .||++ ++
T Consensus 319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p 390 (563)
T 1amu_A 319 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RP 390 (563)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CH
T ss_pred EEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChhhCC------Cc
Confidence 99999999998754433221 22345689999999999999999999999996 99999 4 45555 78
Q ss_pred ccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cc
Q 006121 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KL 651 (660)
Q Consensus 573 ~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~ 651 (660)
+.|++.|..+|+.+|++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. +.
T Consensus 391 e~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 470 (563)
T 1amu_A 391 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQP 470 (563)
T ss_dssp HHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCE
T ss_pred hhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCe
Confidence 89999999888888889999999999999999999999999999999999999999999999999999998877654 45
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
.+++|+.
T Consensus 471 ~~~a~vv 477 (563)
T 1amu_A 471 YLCAYFV 477 (563)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6788764
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-71 Score=614.44 Aligned_cols=433 Identities=17% Similarity=0.149 Sum_probs=354.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 ~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecC
Confidence 3478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+|.++.+++.+++++++++++|+++.... .........+....+. ..+++.... ..+.++......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~- 172 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE- 172 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc-
Confidence 99999999999999999999999875310 0000112222222222 112221110 012222221111
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhh
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~ 420 (660)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|++++. .++.+|+
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence 1112345679999999999999999999999999999988888888999999999999999998875 6899999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.+ .+++..+++.|+++++|+++++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 249 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~ 326 (539)
T 1mdb_A 249 AGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTL 326 (539)
T ss_dssp TTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEE
T ss_pred hCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 47899999999999999999999999999876444456789999999999999999999988877 4899
Q ss_pred eccccccccccccccCCcCCCCcccccCcCCCCc-eEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
+|.||+||+++.+...........+++|+|+++. +++|+|++++++|.|+. |||+| + .||++ +++.
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 398 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEH 398 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHH
T ss_pred EEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcC------Chhh
Confidence 9999999976543321111122346899999764 89999999999999997 99999 3 45555 7888
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
|++.|..++ ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. ++.+
T Consensus 399 t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 472 (539)
T 1mdb_A 399 NAASFTEDG------FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472 (539)
T ss_dssp HHHHBCTTS------CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred hhhhccCCC------CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceE
Confidence 999997543 999999999999999999999999999999999999999999999999999999877654 4567
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++|+.
T Consensus 473 ~a~vv 477 (539)
T 1mdb_A 473 CVFII 477 (539)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 78764
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-70 Score=602.27 Aligned_cols=428 Identities=18% Similarity=0.156 Sum_probs=351.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|+|
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 3678888887753210 02899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.+|.+++.+++++++++++|++..... ....+..........+.... ...+.+.......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKRD------GIAAIAAKVGATVETLGPDG----------RGSLTDAAAGASE--- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGTT------TTHHHHHHHTCEEEECCTTS----------CSHHHHHHHTSCS---
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhhH------HHHHHHhhcCceEEEecCCc----------ccccchhhhcCCC---
Confidence 9999999999999999999999975431 22222222222222221110 1112222211111
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhhcCc
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 423 (660)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++ .++.+++.|+
T Consensus 146 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 146 --AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp --CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred --CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1222345689999999999999999999999999999999888899999999999999999999874 4778999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++++.+ .+++..+++.++ ++|+++++|+++..|++........++++|.+++|||++++++.+++.+.++ ++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccce
Confidence 999987 578999999998 8999999999999999887666677899999999999999999999988764 789999
Q ss_pred ccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (660)
||+||++..++ .........+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++ +++.|++
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~ 370 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWR------MPEKTKS 370 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTT------CHHHHHH
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcC------ChhhhHh
Confidence 99999987533 2233344567899999999999999 88999999997 99999 345555 7889999
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++++|+...+.. +..+++|
T Consensus 371 ~f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~ 444 (503)
T 4fuq_A 371 EFRDDG------FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAV 444 (503)
T ss_dssp TBCTTS------CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred hhCCCC------CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEE
Confidence 997543 999999999999999999999999999999999999999999999999999999877655 4556676
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 445 v~ 446 (503)
T 4fuq_A 445 VV 446 (503)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-70 Score=647.49 Aligned_cols=501 Identities=16% Similarity=0.154 Sum_probs=328.9
Q ss_pred cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcE
Q 006121 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (660)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (660)
|++ ++.+..|+++|..++.++++.+...+..+.....-... ..........+. ...+. .+++++||++
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl-~~~l~--~~a~~~pd~~ 78 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSL-HDYIF--QNISEFATKP 78 (979)
T ss_dssp ---------------------------------------CCCBCCS----SCCCCCCTTSCH-HHHHT--TTGGGTTTSE
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCH-HHHHH--HHHHhCCCCe
Confidence 666 99999999999999999998775443333222211110 000000011111 12222 3458899999
Q ss_pred EEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHH
Q 006121 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (660)
Q Consensus 194 Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l 272 (660)
|+++...+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++||++|.+|++++
T Consensus 79 Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l 152 (979)
T 3tsy_A 79 CLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152 (979)
T ss_dssp EEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHH
T ss_pred EEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHH
Confidence 99986321 2899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCcc
Q 006121 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (660)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
.++++++++++||++.... +.+..+.......++.+.... ......+...+.++...... .....+...
T Consensus 153 ~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 221 (979)
T 3tsy_A 153 AKQAKASNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDNE---SVPIPEGCLRFTELTQSTTE--ASEVIDSVE 221 (979)
T ss_dssp HHHHHHHTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCCT---TSCCCTTEEEGGGTSSCCSG--GGGGSCCSC
T ss_pred HHHHHHcCCeEEEEChHHH------HHHHHHhhcCCceEEEeCCcc---cccCCcccccHHHHhhcccc--ccccCCcCC
Confidence 9999999999999997643 222333322222333332111 11122334455555443221 011122345
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH----hcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEE
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL 427 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~ 427 (660)
..++++|||+|||||||+||||+++|+++++.+.+... .+.+.+++++++.+|++|+.++ ..++.+|..|+++++
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 67899999999999999999999999999887765543 4568899999999999999998 457889999999999
Q ss_pred ecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccccc
Q 006121 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (660)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (660)
.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+++++++|.||+|
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~T 380 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMT 380 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECG
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechh
Confidence 87 56889999999999999999999999999988766677899999999999999999999999998889999999999
Q ss_pred ccccccccCC----cCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccc
Q 006121 508 ELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (660)
Q Consensus 508 E~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (660)
|++.+++... .......+++|+|++|++++|+| ++++++|.|++ |||+| +.||++ +++.|++
T Consensus 381 E~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~ 452 (979)
T 3tsy_A 381 EAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAE 452 (979)
T ss_dssp GGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHH
T ss_pred hhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccC------Chhhhhh
Confidence 9986544321 12234567899999999999999 56999999997 99999 345665 7888999
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++++|+...+.. +..+++|
T Consensus 453 ~f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~ 526 (979)
T 3tsy_A 453 TIDKDG------WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAF 526 (979)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEESCC--------------------------------------------
T ss_pred hccCCC------cEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEE
Confidence 886443 999999999999999999999999999999999999999999999999999998766543 4456666
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 527 vv 528 (979)
T 3tsy_A 527 VV 528 (979)
T ss_dssp --
T ss_pred EE
Confidence 53
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=607.35 Aligned_cols=425 Identities=20% Similarity=0.153 Sum_probs=350.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+. ..++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++|||
T Consensus 25 ~a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 3478999999998654 23899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+|.+|.+++.+++++++++++|++.... +....+...... ..+.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 122222211111 000000 01123333332221
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
..+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122344578999999999999999999999999999999888888999999999999999999999876677779
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+. +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999987 5789999999999999999999999999987654445678899999999999999999998876 68999
Q ss_pred ccccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccc
Q 006121 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHE 575 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t 575 (660)
|.||+||+++..+..... .....+++|+|+++++++|+|++++++|.| . |||+| + .||++ +++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~------~p~~t 383 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWN------RPEAT 383 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETT------CHHHH
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCC------Chhhh
Confidence 999999998754443332 244567899999999999999999999998 4 99999 3 45555 78889
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcc-eee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKL-ELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~-~l~ 654 (660)
++.|. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.... .++
T Consensus 384 ~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~ 456 (517)
T 3r44_A 384 RDAFD-------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAA 456 (517)
T ss_dssp HHTEE-------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred Hhhhc-------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEE
Confidence 98884 2399999999999999999999999999999999999999999999999999999988766544 455
Q ss_pred eec
Q 006121 655 FYF 657 (660)
Q Consensus 655 a~~ 657 (660)
+|+
T Consensus 457 a~v 459 (517)
T 3r44_A 457 AIV 459 (517)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-70 Score=610.81 Aligned_cols=437 Identities=17% Similarity=0.159 Sum_probs=316.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 4578999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+|.++.+++.+++++++++++|++...... ........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998753210 001112222222222 222221111 011233333332221
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhh
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~ 420 (660)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++. .++.+|+
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11112345689999999999999999999999999999999888899999999999999998877763 6899999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 46889999999999999999999999999887555556688999999999999999999998876 5899
Q ss_pred eccccccccccccccCCcCCCCcccccCcCC-CCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
+|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+| + .||++ +++.
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 407 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQ------SPEH 407 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTT------CHHH
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcC------Chhh
Confidence 9999999998654333222223446899997 89999999999999999996 99999 3 45555 7888
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
|++.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. +..+
T Consensus 408 t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 481 (544)
T 3o83_A 408 NSQVFDEDN------YYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKS 481 (544)
T ss_dssp HHHHBCTTC------CEEEEEEEEECTTSCEEEEEEEC------------------------------------------
T ss_pred hhhhCCCCC------CeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceE
Confidence 999996543 999999999999999999999999999999999999999999999999999998876544 4556
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++|+.
T Consensus 482 ~a~vv 486 (544)
T 3o83_A 482 CAFIV 486 (544)
T ss_dssp -----
T ss_pred EEEEE
Confidence 66653
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-69 Score=599.97 Aligned_cols=422 Identities=20% Similarity=0.195 Sum_probs=358.8
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+|+++|+++|+++.++ ++||+||+++++++|++|++. +++|++|+|+++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 3578999999999877 999999999999999999885 889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
++|.+|.+++.+++++++++++|+++..... ... .......++++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------------~~~----------------~~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSID------------AVG----------------QQIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCTT------------CCC----------------CSSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccch------------hcc----------------cccceecHhhhhccccC-
Confidence 9999999999999999999999997642100 000 00112334444433221
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcC
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 422 (660)
.........+++++||+|||||||+||||+++|+++.+.+.+....+++++++++++.+|++|+.+++.++.+|+.|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122345678999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred cEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
+++++.+.. .++..+++.|+++++|++.++|+++..|+.........++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999998642 478899999999999999999999999998776666778999999999999999999999999988999
Q ss_pred eccccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccC
Q 006121 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLN 571 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~ 571 (660)
+|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| + .||++ +
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 361 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLG------E 361 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTT------C
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCC------C
Confidence 9999999998754432221 22345689999999999999999999999997 99999 3 45555 7
Q ss_pred cccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-c
Q 006121 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-K 650 (660)
Q Consensus 572 ~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~ 650 (660)
++.|++.|..+ ++.+||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+||+|++|+|+...+.. +
T Consensus 362 ~~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 362 PELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp HHHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSC
T ss_pred cccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCc
Confidence 88899998753 36779999999999 5999999999999999999999999999999999999999998766443 4
Q ss_pred ceeeeecc
Q 006121 651 LELIFYFS 658 (660)
Q Consensus 651 ~~l~a~~~ 658 (660)
..+++++.
T Consensus 438 ~~~~a~vv 445 (511)
T 3e7w_A 438 EYLIAAIV 445 (511)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEEE
Confidence 56777754
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-69 Score=604.87 Aligned_cols=433 Identities=20% Similarity=0.171 Sum_probs=342.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 28 AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecC
Confidence 478999999996321 1234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
|.++.+++.++++++++++||+++... +....+....+.. .+++..... ..+...++++......
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-- 169 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA------PEGYLAYEEALGEEAD-- 169 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC------CTTCEEHHHHCCSCCC--
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC------CcccccHHHHhhccCC--
Confidence 999999999999999999999987532 2222333333322 122211110 0123456655443221
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh--hHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
.....+++++||+|||||||+||||+++|+++++...+. ...++++++|++++.+|++|+.++..++.+++.
T Consensus 170 ------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~ 243 (541)
T 1v25_A 170 ------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 243 (541)
T ss_dssp ------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHH
T ss_pred ------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhc
Confidence 123467899999999999999999999999998776552 345678899999999999999998778899999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+..+++..+++.|+++++|+++++|+++..|++.......++++||.+++|||++++++.+++ +.+ +++++
T Consensus 244 G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~ 321 (541)
T 1v25_A 244 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVR 321 (541)
T ss_dssp TCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEE
T ss_pred CceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCcee
Confidence 9999998755789999999999999999999999999987543334568899999999999999999988 454 58999
Q ss_pred ccccccccccccccCCcCC----------CCcccccCcCCCCceEEEEcCCCCcCCC-C-CCceeEEEE-e----ccccC
Q 006121 502 ESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPD-D-QPCVGEVGL-F----PLYLG 564 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~vp~-G-~~giGel~v-~----~~y~~ 564 (660)
|.||+||++.+++...... ....+++|+|+++++++|+|++++++|. | +. |||+| + .||++
T Consensus 322 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~--GEl~v~g~~v~~GY~~ 399 (541)
T 1v25_A 322 QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL--GEVQLKGPWITGGYYG 399 (541)
T ss_dssp EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC--EEEEEESTTSBSSCBT
T ss_pred ecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcc--eEEEEeCcchhccccC
Confidence 9999999987554432210 0234689999999999999999999995 3 44 99999 3 45555
Q ss_pred CcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEE
Q 006121 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYA 644 (660)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~ 644 (660)
+++.|++.|..++ ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+.
T Consensus 400 ------~p~~t~~~f~~~g------~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 467 (541)
T 1v25_A 400 ------NEEATRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA 467 (541)
T ss_dssp ------CHHHHHTTBCTTS------CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEE
T ss_pred ------ChhhhhhhccCCC------CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEE
Confidence 7888999997533 9999999999999999999999999999999999999999999999999999998
Q ss_pred EeecC-cceeeeecc
Q 006121 645 WLYFH-KLELIFYFS 658 (660)
Q Consensus 645 ~~~~~-~~~l~a~~~ 658 (660)
..+.. ++.+++|+.
T Consensus 468 ~~~~~~~~~~~a~vv 482 (541)
T 1v25_A 468 IPHPKWQERPLAVVV 482 (541)
T ss_dssp EECSSSSEEEEECC-
T ss_pred ecCCCcCceEEEEEE
Confidence 77654 456777764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-70 Score=601.99 Aligned_cols=423 Identities=19% Similarity=0.208 Sum_probs=353.7
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~ 82 (512)
T 3fce_A 11 AAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVD 82 (512)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeC
Confidence 478999999999887 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.++.+++.+++++++++++|++...... ..+.. ++. ...+.++......
T Consensus 83 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~------------~~~~~--~~~-------------~~~~~~~~~~~~~--- 132 (512)
T 3fce_A 83 LSIPADRVQRIAENSGAKLLLSATAVTVT------------DLPVR--IVS-------------EDNLKDIFFTHKG--- 132 (512)
T ss_dssp TTSCHHHHHHHHHHSCCCEEEESSCCCSS------------CCSSE--EEE-------------THHHHHHHHHTTT---
T ss_pred CCCcHHHHHHHHHhcCCCEEEecCccccc------------ccccc--eec-------------hhhhhhhcccccc---
Confidence 99999999999999999999998642110 00000 000 0012222111111
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcE
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (660)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 11122334568999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
+++.+.. .++..+++.|+++++|++.++|+++..|+........++++||.+++|||++++++.+++.+.+++++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 9998742 47889999999999999999999999998877666778899999999999999999999999998899999
Q ss_pred cccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcc
Q 006121 503 SCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNAD 573 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~ 573 (660)
.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| + .||++ +++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 364 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLG------SPE 364 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTT------CHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcC------Cch
Confidence 99999998754432221 12245689999999999999999999999997 99999 3 45555 788
Q ss_pred cccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCc-ce
Q 006121 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHK-LE 652 (660)
Q Consensus 574 ~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~-~~ 652 (660)
.|++.|.. .++++||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+||+|++|+|+...+... ..
T Consensus 365 ~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~ 440 (512)
T 3fce_A 365 LTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDY 440 (512)
T ss_dssp HHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEE
T ss_pred hhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceE
Confidence 89988864 236779999999999 89999999999999999999999999999999999999999987765543 45
Q ss_pred eeeecc
Q 006121 653 LIFYFS 658 (660)
Q Consensus 653 l~a~~~ 658 (660)
+++++.
T Consensus 441 ~~a~vv 446 (512)
T 3fce_A 441 LLAVVV 446 (512)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666653
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-68 Score=591.51 Aligned_cols=419 Identities=16% Similarity=0.112 Sum_probs=343.3
Q ss_pred cCCCCCCcEEEEEe--cCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 006121 185 HRRKEDNTVAIVWR--EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (660)
Q Consensus 185 ~a~~~pd~~Av~~~--~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (660)
+++++||++|+++. +. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++
T Consensus 11 ~a~~~p~~~a~~~~~~~~--------~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 82 (504)
T 1t5h_X 11 AATRAPDHCALAVPARGL--------RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPA 82 (504)
T ss_dssp HHHHCTTSEEEEETTTTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEE
T ss_pred HHHhCCCceEEEEcCCCc--------eeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEE
Confidence 34789999999986 44 899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEe--ecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccC
Q 006121 262 SIADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (660)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (660)
|+||.++.+++.+++++++++++++ +... ...+....+... ++ .++++....
T Consensus 83 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~~~~~~ 136 (504)
T 1t5h_X 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGDLVRDG 136 (504)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGGTEETT
T ss_pred ecCCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------EecchhhcC
Confidence 9999999999999999999999999 5432 111101111111 11 223332221
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCC--CCCCEEEEecCccccchh-hHHH
Q 006121 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILF 416 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~-~~~~ 416 (660)
...............++++|||+|||||||+||||+++|+++.+.+.+....+++ .+++++++.+|++|+.++ ..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~ 216 (504)
T 1t5h_X 137 EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLV 216 (504)
T ss_dssp EECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHH
T ss_pred cccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHH
Confidence 0000000111134567999999999999999999999999999988888777888 889999999999999998 5688
Q ss_pred HhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcC-C-CCCCCccCccEEEeecCCCChhhHHHHHhh
Q 006121 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-C-LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (660)
Q Consensus 417 ~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~-~-~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~ 494 (660)
.+|+.|+++++.+ .+++..+++.|+++++|+++++|++++.|++.. . ....++++||.+++|||++++++.+++.+.
T Consensus 217 ~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 217 AALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred HHHHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 9999999999987 478999999999999999999999999998754 2 234568999999999999999999999988
Q ss_pred CCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCC---CcCCCCCCceeEEEEe------ccccCC
Q 006121 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF------PLYLGA 565 (660)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~---~~vp~G~~giGel~v~------~~y~~~ 565 (660)
++ ++++|.||+||+++.+.. . ....+++|+|+++++++|+|+++ +++|.|+. |||+|. .||++
T Consensus 296 ~~-~~~~~~YG~TE~~~~~~~--~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~- 367 (504)
T 1t5h_X 296 LP-GEKVNIYGTTEAMNSLYM--R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN- 367 (504)
T ss_dssp CC-SEEEEEEEETTTEEEEEE--E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT-
T ss_pred cC-cceeeeeccccccccccc--c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecC-
Confidence 75 789999999999432221 1 24457899999999999999887 99999996 999995 35554
Q ss_pred cccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEE
Q 006121 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAW 645 (660)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~ 645 (660)
+++.|++.|. + | ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+..
T Consensus 368 -----~~~~t~~~f~-~----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~ 435 (504)
T 1t5h_X 368 -----QPQATAEKLQ-D----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435 (504)
T ss_dssp -----CHHHHHHHEE-T----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEE
T ss_pred -----Cchhhhhhhc-C----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 7788888883 2 2 99999999999999999999999999999999999999999999999999999987
Q ss_pred eecC-cceeeeecc
Q 006121 646 LYFH-KLELIFYFS 658 (660)
Q Consensus 646 ~~~~-~~~l~a~~~ 658 (660)
.+.. +..+++|+.
T Consensus 436 ~~~~~g~~~~a~vv 449 (504)
T 1t5h_X 436 ADQRWGQSVTACVV 449 (504)
T ss_dssp ECSSSSEEEEEEEE
T ss_pred ecCCCCcEEEEEEE
Confidence 7654 456888875
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-69 Score=598.34 Aligned_cols=433 Identities=17% Similarity=0.092 Sum_probs=354.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++ +++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 99999984210 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
|.++.+++.++++++++++||+++... +.+..+....+ ..++++..... ..+...|+++......
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~- 175 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKVD------YRGYQCLDTFIKRNTP- 175 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSSC------BTTBCBHHHHHHHTSC-
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCccc------ccccccHHHHHhcCcc-
Confidence 999999999999999999999997532 12222222222 12222211100 0122346666543321
Q ss_pred CCCCCCCCccC------CCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh---cCCCCCCEEEEecCccccchhh
Q 006121 343 PRPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPV 413 (660)
Q Consensus 343 ~~~~~~~~~~~------~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 413 (660)
.. .+.... .++++|||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++
T Consensus 176 -~~--~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 176 -PG--FQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp -TT--CCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred -cc--CCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 00 111111 23899999999999999999999999999888777665 6788999999999999999987
Q ss_pred H-HHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHH
Q 006121 414 I-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (660)
Q Consensus 414 ~-~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~ 492 (660)
. ++.++ .|+++++.+ .+++..+++.|+++++|+++++|++++.|.+.......++++||.+++|||++++++.+++.
T Consensus 253 ~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVA 330 (548)
T ss_dssp HHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHH
Confidence 6 55666 999999987 57899999999999999999999999999987655556789999999999999999999999
Q ss_pred hhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCc
Q 006121 493 SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGAS 566 (660)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~ 566 (660)
+.+++++++|.||+||++..++.. .......+++|+|+++++++|+| ++++++|+|+. |||+| + .||++
T Consensus 331 ~~~~~~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~-- 405 (548)
T 2d1s_A 331 RRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVN-- 405 (548)
T ss_dssp HHTTCSCCEEEEECGGGSSEEEEC-CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT--
T ss_pred HHcCCCceeeccccccccceeeec-CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcC--
Confidence 988778899999999998755442 22334567999999999999999 78999999997 99999 3 45555
Q ss_pred ccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEe
Q 006121 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWL 646 (660)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~ 646 (660)
+++.|++.|..+ +||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...
T Consensus 406 ----~~~~t~~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~ 475 (548)
T 2d1s_A 406 ----NPEATKELIDEE------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVP 475 (548)
T ss_dssp ----CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred ----ChHHhhhcccCC------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEE
Confidence 778888888543 3999999999999999999999999999999999999999999999999999999877
Q ss_pred ecC-cceeeeecc
Q 006121 647 YFH-KLELIFYFS 658 (660)
Q Consensus 647 ~~~-~~~l~a~~~ 658 (660)
+.. +..+++|+.
T Consensus 476 ~~~~g~~~~a~vv 488 (548)
T 2d1s_A 476 DPVAGELPGAVVV 488 (548)
T ss_dssp ETTTEEEEEEEEE
T ss_pred cCCCCeeeEEEEE
Confidence 654 445677763
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-68 Score=596.74 Aligned_cols=454 Identities=19% Similarity=0.203 Sum_probs=363.2
Q ss_pred CCcCCCCccchhhhcccccC---cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEE
Q 006121 165 GTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAID 239 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~---~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~ 239 (660)
..|......+....++..++ +|+++|+++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|+
T Consensus 29 ~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~ 105 (570)
T 3c5e_A 29 GHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVV 105 (570)
T ss_dssp CBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEE
T ss_pred ccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEE
Confidence 34655555555555555432 23449999999985320 1234899999999999999999986 9999999999
Q ss_pred cCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCC
Q 006121 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAI 317 (660)
Q Consensus 240 ~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 317 (660)
++|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... +.+..+....+. .++++...
T Consensus 106 ~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 179 (570)
T 3c5e_A 106 LPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSEK 179 (570)
T ss_dssp CCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESSS
T ss_pred cCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEeccc
Confidence 9999999999999999999999999999999999999999999999987532 222222233332 22333211
Q ss_pred CCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHH-HHHHhhHhcCCCC
Q 006121 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKV 396 (660)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~ 396 (660)
. ..+...+++++..... ........++++|||+|||||||+||||+++|+.+.+ ...+. ..+++++
T Consensus 180 ~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~ 246 (570)
T 3c5e_A 180 S-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQA 246 (570)
T ss_dssp C-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCT
T ss_pred C-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCC
Confidence 0 1123456665543322 1122345679999999999999999999999994432 44444 6678899
Q ss_pred CCEEEEecCccccchhh-HHHHhhhcCcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCcc
Q 006121 397 GDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474 (660)
Q Consensus 397 ~~~~l~~~~~~~~~~~~-~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr 474 (660)
+|++++.+|++|+.+++ .++.++..|+++++.+. .+++..+++.|+++++|+++++|++++.|++.. ....++++||
T Consensus 247 ~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr 325 (570)
T 3c5e_A 247 SDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQ 325 (570)
T ss_dssp TCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCC
T ss_pred CceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccce
Confidence 99999999999999986 68899999999999874 568999999999999999999999999998763 3345689999
Q ss_pred EEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCcee
Q 006121 475 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (660)
Q Consensus 475 ~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giG 554 (660)
.+++|||++++++.+++.+.+ +++++|.||+||+++.++.. .......+++|+|+++++++|+|++|+++|.|+. |
T Consensus 326 ~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~--G 401 (570)
T 3c5e_A 326 NCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE--G 401 (570)
T ss_dssp EEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC--E
T ss_pred EEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecC-cccccCCCcccccCCCceEEEECCCCCCCCCCCC--C
Confidence 999999999999999998876 58899999999998654432 2233456799999999999999999999999997 9
Q ss_pred EEEEe------c----cccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecc
Q 006121 555 EVGLF------P----LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALL 624 (660)
Q Consensus 555 el~v~------~----~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~ 624 (660)
||+|. + ||++ +++.|+++|. .+||+|||+|++|+||+|+|+||+|||||++|+||+|
T Consensus 402 El~v~~~~~~g~~v~~GY~~------~~~~t~~~f~-------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p 468 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVD------NPDKTAANIR-------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468 (570)
T ss_dssp EEEEECSSBCCTTCCCEETT------CHHHHHHTEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECH
T ss_pred eeEEeccCCCCchhhccccC------ChhHhhhhhc-------CCccccceeEEEcCCceEEEEecCCCEEEECCEEECH
Confidence 99994 2 3443 6788888885 2399999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 625 LPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 625 ~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.|||++|.+||+|++|+|+...+.. +..+++|+.
T Consensus 469 ~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 503 (570)
T 3c5e_A 469 SEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503 (570)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEE
Confidence 9999999999999999999877654 455677764
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-70 Score=607.75 Aligned_cols=439 Identities=15% Similarity=0.130 Sum_probs=309.5
Q ss_pred CCCCCCcEEEE---EecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 006121 186 RRKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (660)
Q Consensus 186 a~~~pd~~Av~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (660)
++++|+++|++ +... .+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++
T Consensus 30 a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 103 (550)
T 3rix_A 30 MKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103 (550)
T ss_dssp HHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEE
T ss_pred HHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEe
Confidence 36788888865 3211 13899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCCCCCCCCCCcchhhhhccCC
Q 006121 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (660)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (660)
|++|.++.+++.+++++++++++|+++... +.........+.. .+++...... ..+..++.++.....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD-----YQGFQSMYTFVTSHL 172 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC-----BTTBCBHHHHHHHHC
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCcc-----ccCcccHHHHhhccc
Confidence 999999999999999999999999997532 2223333333322 2222211110 123344555544322
Q ss_pred CCCC-C-CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh---cCCCCCCEEEEecCccccchhhHH
Q 006121 341 YHPR-P-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVIL 415 (660)
Q Consensus 341 ~~~~-~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~ 415 (660)
.... . ...+.....++++|||+|||||||+||||+++|+++.+.+.+.... +++.+++++++.+|++|+.+++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 1000 0 0111122345789999999999999999999999998887766554 568899999999999999999989
Q ss_pred HHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhC
Q 006121 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (660)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 495 (660)
+.+++.|+++++.+ .+++..+++.|+++++|+++++|+++..|++.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 57899999999999999999999999999988766677899999999999999999999999888
Q ss_pred CCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCcccc
Q 006121 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (660)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~~ 569 (660)
+...++|.||+||+++.++... ......+++|+|+++++++|+| ++++++|.|+. |||+| +.||++
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~----- 403 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN----- 403 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECC-TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT-----
T ss_pred CCCccccccCcCccccceecCC-CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcC-----
Confidence 7556999999999997654433 3345668999999999999999 67999999997 99999 345655
Q ss_pred cCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC
Q 006121 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH 649 (660)
Q Consensus 570 ~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~ 649 (660)
+++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+..
T Consensus 404 -~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 476 (550)
T 3rix_A 404 -NPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDD 476 (550)
T ss_dssp -CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC-----------------------------------------
T ss_pred -ChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCC
Confidence 778888888543 3999999999999999999999999999999999999999999999999999988765543
Q ss_pred c-ceeeeec
Q 006121 650 K-LELIFYF 657 (660)
Q Consensus 650 ~-~~l~a~~ 657 (660)
. ..+++|+
T Consensus 477 ~g~~~~a~v 485 (550)
T 3rix_A 477 AGELPAAVV 485 (550)
T ss_dssp ---------
T ss_pred CCceEEEEE
Confidence 3 3344443
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-69 Score=598.55 Aligned_cols=423 Identities=16% Similarity=0.115 Sum_probs=345.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+.+.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 13 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl 84 (521)
T 3l8c_A 13 FAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPV 84 (521)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|+++......... ....+.++......
T Consensus 85 ~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~-- 132 (521)
T 3l8c_A 85 DVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIESAKLA-- 132 (521)
T ss_dssp ETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHHHHHHH--
T ss_pred CccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhhhcccc--
Confidence 9999999999999999999999987542111100 00112221111000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh--cCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
...........+++++||+|||||||+||||+++|+++.+.+.+.... +++.+++++++..|++|+.+++.++.+++.
T Consensus 133 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 212 (521)
T 3l8c_A 133 EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLAL 212 (521)
T ss_dssp TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHT
T ss_pred cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhc
Confidence 001112234578999999999999999999999999999887776655 678899999999999999999889999999
Q ss_pred CcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 422 G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
|+++++.+.. .++..+++.|+++++|++.++|+++..+.........++++||.+++||+++++++.+++.+.+++++
T Consensus 213 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 292 (521)
T 3l8c_A 213 GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAK 292 (521)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCE
T ss_pred CCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCce
Confidence 9999998743 37889999999999999999999999998876666677899999999999999999999999988899
Q ss_pred eeccccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCccccc
Q 006121 500 IIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLL 570 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~ 570 (660)
++|.||+||+++.++..... .....+++|+|+++++++|+|++|+++|.|+. |||+| + .||++
T Consensus 293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------ 364 (521)
T 3l8c_A 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLN------ 364 (521)
T ss_dssp EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTT------
T ss_pred EEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcC------
Confidence 99999999998754432221 12244689999999999999999999999997 99999 3 45555
Q ss_pred CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 571 ~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
+++.|++.|... ++.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|+...+..
T Consensus 365 ~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 441 (521)
T 3l8c_A 365 NPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEH 441 (521)
T ss_dssp CHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSC
T ss_pred CchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCC
Confidence 788899988643 3567999999999999999999999999999999999999999999999999999888654332
Q ss_pred -cceeeeecc
Q 006121 650 -KLELIFYFS 658 (660)
Q Consensus 650 -~~~l~a~~~ 658 (660)
+..+++|+.
T Consensus 442 ~~~~~~a~vv 451 (521)
T 3l8c_A 442 KVQNLLAYIV 451 (521)
T ss_dssp C---CEEEEE
T ss_pred CceEEEEEEE
Confidence 356777764
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-68 Score=591.50 Aligned_cols=441 Identities=19% Similarity=0.186 Sum_probs=345.8
Q ss_pred chhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHH
Q 006121 174 NIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA 252 (660)
Q Consensus 174 ~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA 252 (660)
+....++..++ + +|+++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++||
T Consensus 24 ~~~~~~l~~~~--~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 92 (529)
T 2v7b_A 24 NFAAYLFRLNE--T-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92 (529)
T ss_dssp CHHHHHHHHTG--G-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred eHHHHHHHhhh--c-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 33344444433 6 999999998766 999999999999999999999 99999999999999999999999
Q ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC---CcEEEEcCCCCCCCCCCCCCC
Q 006121 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQD 329 (660)
Q Consensus 253 ~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 329 (660)
|+++|++++|++|.++.+++.+++++++++++|++.... +.........+ ..++++..... .....
T Consensus 93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 161 (529)
T 2v7b_A 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRLA 161 (529)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------CC
T ss_pred HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----ccccc
Confidence 999999999999999999999999999999999987532 11222221111 12222221100 00011
Q ss_pred cchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhh-HHHHHHhhHhcCCCCCCEEEEecCccc
Q 006121 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGW 408 (660)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (660)
..++++...... ........+++++||+|||||||+||||+++|+++ .+...+....++++++|++++.+|++|
T Consensus 162 ~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 162 PLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFF 236 (529)
T ss_dssp CBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTS
T ss_pred cchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHH
Confidence 245555542221 11223456799999999999999999999999999 666666556678899999999999999
Q ss_pred cchhh-HHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhh
Q 006121 409 VMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487 (660)
Q Consensus 409 ~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~ 487 (660)
+.++. .++.+|..|+++++.+..+++..+++.|+++++|+++++|+++..|++..........+||.+++|||++++++
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHH
Confidence 99985 46789999999999865678999999999999999999999999998765433321248999999999999999
Q ss_pred HHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccc
Q 006121 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLY 562 (660)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y 562 (660)
.+++.+.+ +++++|.||+||++.+++.... .....+++|+|++|++++|+|++|+++|.|+. |||+| + .||
T Consensus 317 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 317 GERFTAHF-GCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVMY 392 (529)
T ss_dssp HHHHHHHH-SCCEEEEEECTTTSSEEEECCT-TCCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCCB
T ss_pred HHHHHHHh-CCceeeeEchhhcCceeecccc-CCCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCccccc
Confidence 99998876 5889999999999754443322 22456789999999999999999999999996 99999 3 345
Q ss_pred cCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEE
Q 006121 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHI 642 (660)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~v 642 (660)
++ +++.|++.|. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++++|
T Consensus 393 ~~------~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~v 459 (529)
T 2v7b_A 393 WN------NREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV 459 (529)
T ss_dssp TT------CHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEE
T ss_pred CC------ChHHHHHhhh-------cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 54 7788888886 2399999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcceeeeecc
Q 006121 643 YAWLYFHKLELIFYFS 658 (660)
Q Consensus 643 v~~~~~~~~~l~a~~~ 658 (660)
+......+..+++|+.
T Consensus 460 v~~~~~~~~~~~a~vv 475 (529)
T 2v7b_A 460 VGVDHGGLVKTRAFVV 475 (529)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 8874444556777764
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=592.75 Aligned_cols=424 Identities=14% Similarity=0.088 Sum_probs=308.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.+|.+++.+++++++++++|++.... +.........+....++.... ....+.++......
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 149 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD-- 149 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC--
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC--
Confidence 9999999999999999999999987532 111122222222211221111 11122232221111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
.........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.|+
T Consensus 150 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 150 --TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp --SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred --CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 112234567899999999999999999999999999999998888999999999999999999999988888777777
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
+.++.. .+++..+++.|+++++|++.++|+++..|++.. ...++++||.++.||++ +..+++.+.+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777776 678999999999999999999999999998875 34568899999999987 777888888888999999
Q ss_pred ccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCccccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~ 578 (660)
||+||++++++..... ....++|+|++|++++|+|++++++|+|+. |||+| +.||++ +++.|++.
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~t~~~ 371 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWN------NAAATQHA 371 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETT------CHHHHHHH
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------CHHHhHHH
Confidence 9999999755443222 223459999999999999999999999997 99999 345555 78889888
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEecc--CCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeee
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIF 655 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~--dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a 655 (660)
|. .+||+|||+|++++||+|+|+||. ||+||++|+||+|.|||++|.+||+|++|+|+...+.. +..+++
T Consensus 372 f~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 444 (509)
T 3ivr_A 372 FR-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKA 444 (509)
T ss_dssp TG-------GGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------------
T ss_pred hh-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEE
Confidence 85 239999999999999999999999 99999999999999999999999999999998766544 444555
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
|+.
T Consensus 445 ~v~ 447 (509)
T 3ivr_A 445 VCV 447 (509)
T ss_dssp ---
T ss_pred EEE
Confidence 543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-67 Score=581.24 Aligned_cols=408 Identities=18% Similarity=0.165 Sum_probs=333.4
Q ss_pred cCCCCCC-cEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd-~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+|+|++++||
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3467776 999999887 9999999999999998775 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
||.+|.+++.+++++++++++|++.... .. .... ....+.+...
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~--~~~~~~~~~~-------------------------- 142 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALG--ALERVDVDVR-------------------------- 142 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGT--TSEEEECCTT--------------------------
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhc--cccccccccc--------------------------
Confidence 9999999999999999999999986421 00 0000 0001111000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcC
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G 422 (660)
.....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++..|++|..+. +.++.+|+.|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 143 ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 000111234567899999999999999999999999999999988888999999999999999998876 5789999999
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC---CCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
+++++.+ .+++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++|||++++++.+++.+.+ +++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCe
Confidence 9999986 57888899999 88999999999999999874221 123467899999999999999999988775 589
Q ss_pred eeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCC---CCCceeEEEE-----eccccCCcccccC
Q 006121 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD---DQPCVGEVGL-----FPLYLGASDRLLN 571 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~---G~~giGel~v-----~~~y~~~~~~~~~ 571 (660)
++|.||+||+++.++. ........+++|+|++|++++|+|++|++++. |++ |||+| +.||++ +
T Consensus 300 ~~~~YG~TE~~~~~~~-~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~ 370 (505)
T 3nyq_A 300 VIERYGMTETLMNTSV-RADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN------R 370 (505)
T ss_dssp CEEEEEETTTEEEEEC-CTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCEETT------C
T ss_pred eecccchhhccccccc-CCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhhhCC------C
Confidence 9999999999875443 33334556789999999999999999999987 775 99999 345665 7
Q ss_pred cccccccccccccCCCceeEeeCceEEEecCceEEEEecc-CCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 572 ~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~-dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
++.|++.|..++ ||+|||+|++++||+|+|+||+ |+|||++|+||+|.|||++|.+||+|++|+|+...+..
T Consensus 371 ~~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~ 444 (505)
T 3nyq_A 371 PDATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444 (505)
T ss_dssp HHHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred hhHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCC
Confidence 889999997654 9999999999999999999997 69999999999999999999999999999999877655
Q ss_pred cceeeeecc
Q 006121 650 KLELIFYFS 658 (660)
Q Consensus 650 ~~~l~a~~~ 658 (660)
+..+++|+.
T Consensus 445 g~~l~a~vv 453 (505)
T 3nyq_A 445 GERIVAWIV 453 (505)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 567888864
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-66 Score=572.09 Aligned_cols=429 Identities=16% Similarity=0.157 Sum_probs=336.0
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+++++|+++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 4578999999999877 999999999999999999986 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.++.+++.+++++++++++|++...............+ .........................+...... .
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI----EFAGRDITTNGLLDNTMGIQYDTSNETVVPKE----S 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC------------------------------------C----C
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc----eeeeeecccccccccccccccccchhhccccC----C
Confidence 999999999999999999999997653222111000000 00000000000000000000000000110000 0
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcE
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (660)
+.........++++|||+|||||||+||||+++|+++.+.+.+....+++++++++++.+|++|+.++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00111234568999999999999999999999999999999888888999999999999999999999889999999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+++.+ .+++..+++.|+++++|++.++|++++.|++...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 5789999999999999999999999999998754332 389999999999999999888763 68899999
Q ss_pred cccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccccccc
Q 006121 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~ 578 (660)
|+||+++.++..... .....+++|+|+++++++|+|++ .|+. |||+| + .||++ +++.|+.
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~--GEl~v~g~~~~~gY~~------~~~~t~~- 371 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGH--GELMIKGANVMNGYLY------PTDLTGT- 371 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCC--EEEEEESTTSCSCCSB------STTCCCS-
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCc--cEEEEeccchhhhhCc------Chhhcch-
Confidence 999998654443322 22345789999999999999976 4554 99999 3 45554 6666665
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
|. .+||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|.+||+|++|+|+...+.. +..+++|+
T Consensus 372 ~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v 444 (501)
T 3ipl_A 372 FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYF 444 (501)
T ss_dssp EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEE
Confidence 42 23999999999999999999999999999999999999999999999999999999887665 44566665
Q ss_pred c
Q 006121 658 S 658 (660)
Q Consensus 658 ~ 658 (660)
.
T Consensus 445 ~ 445 (501)
T 3ipl_A 445 V 445 (501)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-66 Score=586.52 Aligned_cols=433 Identities=14% Similarity=0.110 Sum_probs=349.2
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 ~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 20 RALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp HHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEe
Confidence 3478999999998642 1234999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC---HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhcc
Q 006121 264 ADSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (660)
Q Consensus 264 ~p~~p---~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 338 (660)
+|.++ .+++.++++++++++++++.......... .....+. ....+ ..+.+...
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~ 154 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-----ELNTNPKFLKIPAI----------------ALESIELN 154 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC----------CCEETTEEEE----------------EGGGCCGG
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh-----hhhhccccccccee----------------echhcccc
Confidence 99984 57899999999999999987532110000 0000000 00111 11111111
Q ss_pred CCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhH-HHH
Q 006121 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFS 417 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~ 417 (660)
.. .........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++++.. ++.
T Consensus 155 ~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 229 (590)
T 3kxw_A 155 RS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT 229 (590)
T ss_dssp GG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred cc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence 00 011223457899999999999999999999999999999999888999999999999999999999876 889
Q ss_pred hhhcCcEEEEecCCC---ChhhHHHHHHHcCCeEEeecHHHHHHHHhc---CCCCCCCccCccEEEeecCCCChhhHHHH
Q 006121 418 SFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWL 491 (660)
Q Consensus 418 ~l~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~---~~~~~~~l~~lr~v~~gGe~l~~~~~~~~ 491 (660)
+++.|+++++.+... ++..+++.|+++++|++.++|+++..|++. ......++++||.+++|||++++++.+++
T Consensus 230 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 309 (590)
T 3kxw_A 230 PIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHF 309 (590)
T ss_dssp HHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHH
Confidence 999999999986421 788999999999999999999999998765 22345678999999999999999999998
Q ss_pred HhhCC-----CCceeccccccccccccccCCcC--------------------------CCCcccccCcCCCCceEEEEc
Q 006121 492 SSKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVILD 540 (660)
Q Consensus 492 ~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~vld 540 (660)
.+.++ +.+++|.||+||+++.++..... .....+++|+|+++ ++|+|
T Consensus 310 ~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d 387 (590)
T 3kxw_A 310 YQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID 387 (590)
T ss_dssp HHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC
T ss_pred HHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc
Confidence 88763 35799999999999765543211 11234689999998 88999
Q ss_pred CC-CCcCCCCCCceeEEEE-----eccccCCcccccCcccccccccccccCC--CceeEeeCceEEEecCceEEEEeccC
Q 006121 541 EC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGDIIKRTVGGYIIVQGRAD 612 (660)
Q Consensus 541 ~~-~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~--~~r~y~TGDl~~~~~dG~l~~~GR~d 612 (660)
++ ++++|.|++ |||+| +.||++ +++.|++.|..++... |.+||+|||+|+++ ||+|+|+||+|
T Consensus 388 ~~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~d 458 (590)
T 3kxw_A 388 PDTLIPCDFDQV--GEIWVQSNSVAKGYWN------QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458 (590)
T ss_dssp TTTCCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESS
T ss_pred CCCCcCCCCCCE--EEEEEeCCcccccccC------ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCcc
Confidence 76 999999996 99999 345655 8889999998765543 55699999999999 99999999999
Q ss_pred CccccCceeecchHHHHhh-cCCCCce--eeEEEEEeecCcceeeeecc
Q 006121 613 DTMNLGGIKALLLPLTFLS-SPRSSFK--CLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 613 d~iki~G~rv~~~eIE~~L-~~~~~V~--~a~vv~~~~~~~~~l~a~~~ 658 (660)
||||++|+||+|.|||++| ..+|+|. +++|+...+..+.+++++++
T Consensus 459 d~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~ 507 (590)
T 3kxw_A 459 DLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCE 507 (590)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEE
Confidence 9999999999999999999 8899998 77777777777777877764
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-66 Score=578.60 Aligned_cols=415 Identities=19% Similarity=0.186 Sum_probs=298.4
Q ss_pred cCCCCCCcEEEEEecCC--CCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 006121 185 HRRKEDNTVAIVWREDR--CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~--~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (660)
+|+++||++|+++.+.. ......+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+|+|++++
T Consensus 29 ~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 29 WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 34789999999986520 0112235899999999999999999999 8 799999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
||+|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~ 165 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT 165 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc
Confidence 9999999999999999999999999865321110 0111111110 11122222222111
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh--------cCCCCCCEEEEecCccccchhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--------IDLKVGDVYCWPTNLGWVMGPV 413 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 413 (660)
........++++|||+|||||||+||||+++|+++.+.+.+.... +.+...+++++..+++|+.++.
T Consensus 166 -----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (562)
T 3ite_A 166 -----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG 240 (562)
T ss_dssp -----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred -----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence 111233457889999999999999999999999998877654432 4578899999999999999999
Q ss_pred HHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHh
Q 006121 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (660)
Q Consensus 414 ~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~ 493 (660)
.++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+... ..++++||.+++||+++++++.+++.+
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~ 316 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSS 316 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhh
Confidence 9999999999999876433456789999999999999999999887543 346789999999999999999998876
Q ss_pred hCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEE-----eccccCCcc
Q 006121 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (660)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v-----~~~y~~~~~ 567 (660)
.+ +++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|+|+. |||+| ..||++
T Consensus 317 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~--- 390 (562)
T 3ite_A 317 SD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLN--- 390 (562)
T ss_dssp CS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESS---
T ss_pred CC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCC---
Confidence 54 589999999999987655444444455678999999999999995 6889999997 99999 346665
Q ss_pred cccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCC-CCceeeEEEEE
Q 006121 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPR-SSFKCLHIYAW 645 (660)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~-~~V~~a~vv~~ 645 (660)
+++.|+..|. +|.+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+| |.|.+++|+..
T Consensus 391 ---~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 391 ---RPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLL 461 (562)
T ss_dssp ---CTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred ---CccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEe
Confidence 6666654433 4678999999999999999999999999999999999999999999998 66666665543
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-60 Score=520.77 Aligned_cols=386 Identities=16% Similarity=0.137 Sum_probs=300.0
Q ss_pred cCCCCCCcEEEEEecCC-CCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+++++||++|+++.+.. ...+..+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+++|+++||
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 34789999999987621 1122345999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC---cEEEEcCCCCCCCCCCCCCCcchhhhh
Q 006121 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFL 336 (660)
Q Consensus 263 l~p---~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~ 336 (660)
|++ .++.+++.++++++++++||++..... .........+. ..++ .++.+.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 168 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVD------DVVQHVARRPGESPPSII-----------------EVDLLD 168 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHH------HHHHTCC------CCEEE-----------------EGGGSC
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHH------HHHHHHhcccccccccee-----------------Eecccc
Confidence 999 889999999999999999999975321 11111111100 0111 111110
Q ss_pred ccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCC------CCEEEEecCccccc
Q 006121 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVM 410 (660)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ 410 (660)
.. ...........++++|||+|||||||+||||+++|+++.+.+.+....+.+.+ ++++++.+|++|++
T Consensus 169 ~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 243 (480)
T 3t5a_A 169 LD-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM 243 (480)
T ss_dssp TT-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTT
T ss_pred cc-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCcc
Confidence 00 01112233456789999999999999999999999999999888888888877 99999999999999
Q ss_pred hh-hHHHHhhhcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhc----CCCCCCCccCccEEEeecCC
Q 006121 411 GP-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGET 482 (660)
Q Consensus 411 ~~-~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~lr~v~~gGe~ 482 (660)
++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..|+.. ......++++||.+++|||+
T Consensus 244 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~ 322 (480)
T 3t5a_A 244 GLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSER 322 (480)
T ss_dssp HHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTT
T ss_pred HHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCc
Confidence 96 5789999999999998643 3789999999999999 88899988887753 22345678999999999999
Q ss_pred CChhhHHHHHhhCC-----CCceeccccccccccccccCCcCC------------------------CCcccccCcCCCC
Q 006121 483 SNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATMT 533 (660)
Q Consensus 483 l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~~ 533 (660)
+++++.+++.+.++ +++++|.||+||+++.++...... .....++|+|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~- 401 (480)
T 3t5a_A 323 VQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS- 401 (480)
T ss_dssp CCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-
T ss_pred CCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-
Confidence 99999999998873 457999999999997655443321 123458999999
Q ss_pred ceEEEEcCC-CCcCCCCCCceeEEEE-----eccccCCcccccCccccccccccccc-----CCCceeEeeCceEEEecC
Q 006121 534 AGLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----YKGMCLRRHGDIIKRTVG 602 (660)
Q Consensus 534 ~~~~vld~~-~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-----~~~~r~y~TGDl~~~~~d 602 (660)
++++|+|++ |+++|.|++ |||+| +.||++ +++.|++.|..++. .++++||||||+|+++ |
T Consensus 402 ~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-d 472 (480)
T 3t5a_A 402 PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQ------KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-D 472 (480)
T ss_dssp SEEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTT------BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-T
T ss_pred CEEEEEcCCCCcCCCCCCE--EEEEEeCCcccccccc------CcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-C
Confidence 999999976 899999997 99999 345555 78899999974432 2356799999999997 9
Q ss_pred ceEEEEec
Q 006121 603 GYIIVQGR 610 (660)
Q Consensus 603 G~l~~~GR 610 (660)
|+|+|+||
T Consensus 473 G~l~~~GR 480 (480)
T 3t5a_A 473 GKMFIIGR 480 (480)
T ss_dssp TEEEECC-
T ss_pred CEEEEeCC
Confidence 99999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=387.47 Aligned_cols=261 Identities=16% Similarity=0.116 Sum_probs=218.6
Q ss_pred CCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCCh
Q 006121 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (660)
Q Consensus 355 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~ 434 (660)
.+++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999999899999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccc
Q 006121 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (660)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (660)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||+++.++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988754 34568999999999999999999988764 588999999999987544
Q ss_pred cCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEeeC
Q 006121 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594 (660)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TG 594 (660)
. ........+.+|.|.||+++.+.+ . |||++...+. ..+||+||
T Consensus 190 ~-~~~~~~~~g~~~~~~pgv~~~~~~----------~--Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 L-KALNGPEASELYVFLPGIQYGVDE----------R--GCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp E-EECSSTTCCSCEEECTTCEEEECT----------T--SEEEEESGGG-----------------------TTCCEEEE
T ss_pred c-ccccccccceeeccCCCeEEEecC----------c--CceEEecccc-----------------------cCcceecC
Confidence 3 233344567899999999887643 2 8998832211 12399999
Q ss_pred ceEEEecCceEEEEeccCCccccCceeecchHHHHhh---cCCCCceeeEEEEEe-ecC-cceeeeecc
Q 006121 595 DIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLS---SPRSSFKCLHIYAWL-YFH-KLELIFYFS 658 (660)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L---~~~~~V~~a~vv~~~-~~~-~~~l~a~~~ 658 (660)
|+|++|+|| ++|+||+|||||++|+||+|.|||++| .+||+|.+|+|+... +.. ++.+++|++
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~ 301 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIE 301 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEE
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEE
Confidence 999999998 778899999999999999999999877 468999999887543 333 456677664
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=387.80 Aligned_cols=280 Identities=19% Similarity=0.182 Sum_probs=229.2
Q ss_pred cCCC-CCeEEEEecCCCCCCcceEEecchhhHHHHHHh---hHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEE
Q 006121 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (660)
Q Consensus 352 ~~~~-~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (660)
..++ ++++||+|||||||+||||+++|+++.+...+. ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 334589999999999998765544 56788999999999
Q ss_pred EecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCC--CccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+.+ ..++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 45889999999999999999999999999876332222 378999999999999999999998877 58999999
Q ss_pred cccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
|+||+++.++.... .....+|.|.+++.++|+| ++|+++|.|+. |||+|... +.+.| |
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~-------------~~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTL-------------DREMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEES-------------SCCSS---C
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEecc-------------CcCCc---e
Confidence 99999653222211 1112367788899999999 78999999997 99999431 11123 1
Q ss_pred cCCCceeEeeCceEEEecCc------e---EEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 584 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~dG------~---l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
..||+|||+|++++|| + ++|+||.||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 2399999999999998 5 699999999999999999999999999999999998888776544 5678
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++|++
T Consensus 374 ~a~v~ 378 (436)
T 3qov_A 374 IVEVE 378 (436)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=379.25 Aligned_cols=280 Identities=15% Similarity=0.094 Sum_probs=226.2
Q ss_pred cCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh---HhcCCCCCCEEEEecCcc-ccchhhHHHHhhhcCcEEEE
Q 006121 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (660)
Q Consensus 352 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~G~~lv~ 427 (660)
...+++++||+|||||||+||||+++|+++.+...+.. ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877654433 357889999999999985 56666678899999999988
Q ss_pred ecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCC--CccCccEEEeecCCCChhhHHHHHhhCCCCceecccc
Q 006121 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (660)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (660)
.+ ..++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MS-GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 76 35889999999999999999999999999865322222 247999999999999999999998877 589999999
Q ss_pred ccccccc-cccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
+||+++. +....... ....+.|.+++.++|+| ++|+++|.|+. |||+|... |++.| |
T Consensus 246 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVET---KDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTTT---CCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCCC---CCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9998542 22211111 11145577899999999 46999999996 99999531 12233 1
Q ss_pred cCCCceeEeeCceEEEecC-ceE-----EEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccceeeee
Q 006121 584 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLELIFY 656 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~d-G~l-----~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l~a~ 656 (660)
..||+|||+|++++| |++ +|+||.||+||++|+||+|.|||++|.+||+|++++|+...+. .+.+++++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 139999999999999 997 8999999999999999999999999999999998887765544 45677777
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
++
T Consensus 381 v~ 382 (443)
T 2y4o_A 381 VE 382 (443)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=376.61 Aligned_cols=280 Identities=16% Similarity=0.101 Sum_probs=226.0
Q ss_pred cCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh---HhcCCCCCCEEEEecCc-cccchhhHHHHhhhcCcEEEE
Q 006121 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (660)
Q Consensus 352 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~ 427 (660)
...++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999877654333 35788999999999998 466666678899999999998
Q ss_pred ecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCC--ccCccEEEeecCCCChhhHHHHHhhCCCCceecccc
Q 006121 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (660)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (660)
.+ ..++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FG-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 76 358899999999999999999999999998753222222 47999999999999999999998776 589999999
Q ss_pred ccccccc-cccCCcCCCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
+||+++. +....... ....+.|.+++.++|+|+ +|+++|.|+. |||+|.. .|++.| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~-------------~t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTS-------------LTKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEE-------------SSCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEec-------------CCcCCc---h
Confidence 9998532 22222111 112556778999999994 6999999997 9999943 112233 1
Q ss_pred cCCCceeEeeCceEEEec-CceE-----EEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccceeeee
Q 006121 584 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLELIFY 656 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~-dG~l-----~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l~a~ 656 (660)
..||+|||+|++++ ||++ +|+||.||+||++|++|+|.|||++|.+||+|++++|+...+. .+..++++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~ 378 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLN 378 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEE
Confidence 13999999999999 6996 9999999999999999999999999999999988877765543 45678887
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
++
T Consensus 379 v~ 380 (437)
T 2y27_A 379 VE 380 (437)
T ss_dssp EC
T ss_pred EE
Confidence 65
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=300.08 Aligned_cols=236 Identities=14% Similarity=0.044 Sum_probs=180.7
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh---hHhcCCCCCCEEEEecCc-cccchhhHHHHhhhcCcEEEEe
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~~ 428 (660)
.+++++++|+|||||||+||||+++|+++.+...+. ...++++++|++++..|+ .|+.++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999999887754 355678899999999999 88888888888899999 5554
Q ss_pred cCCCChh-----------------------hHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCCh
Q 006121 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (660)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~ 485 (660)
. .+++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 45665 77789999999999999999999987633223456899999999999999
Q ss_pred hhHHHHH-hhCCCCceeccccccccccccccCCcCCCCccc-ccCcC------CCCceEEEEcC-CCCcCCCCCCceeEE
Q 006121 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG-AFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEV 556 (660)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~-~iG~p------~~~~~~~vld~-~~~~vp~G~~giGel 556 (660)
++.+++. +.+++++++|.||+||+++++... .. ++|+| +++++++|+|+ +|+++|.|++ |||
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~-------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl 316 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL-------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNV 316 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC-------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecc-------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEE
Confidence 9999999 888789999999999998654221 12 58999 99999999997 9999999996 999
Q ss_pred EEeccccCCcccccCcccccccccccccCCCceeEeeCceEEEecC---------ceEEEEeccCCccccCce
Q 006121 557 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG---------GYIIVQGRADDTMNLGGI 620 (660)
Q Consensus 557 ~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~d---------G~l~~~GR~dd~iki~G~ 620 (660)
+|..-. ...|.. .|+|||++++.+. ..+..++|.|+++||+|.
T Consensus 317 ~vt~l~-------------~~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLS-------------PWAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEE-------------TTEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcC-------------cccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 994321 112311 5999999988543 257789999999999985
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=109.66 Aligned_cols=134 Identities=13% Similarity=0.009 Sum_probs=81.5
Q ss_pred ccC---ccEEEeecCCCChhhHHHHHhhCCCCcee-ccccccccccccccCCcCCCCcccccCc-CCCCceE-EEEc--C
Q 006121 470 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMTAGL-VILD--E 541 (660)
Q Consensus 470 l~~---lr~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~~~-~vld--~ 541 (660)
+|+ +..++.||- ..-...++...++.+++ ..|+.||+... +...+..+ +...|- .+++.-. ..++ +
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i~~~p~~~--~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG-INLDPLCK--PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE-ECSCTTSC--GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee-eccCCCCC--cccCceeecCCcEEEEEEeccc
Confidence 456 555566662 22234455555567776 99999996432 21111111 111122 2333311 2332 2
Q ss_pred C--C-----CcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEeeCceEEEec----CceEEEEec
Q 006121 542 C--G-----VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR 610 (660)
Q Consensus 542 ~--~-----~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~----dG~l~~~GR 610 (660)
. . ..|..|+. +||+|+.. ++ .+ =|++||+++... ..+|.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~--~G------------L~----------RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNF--AG------------LY----------RMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECS--SS------------CC----------SEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeec--cc------------ee----------eEEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 1 23457775 99988321 00 11 199999999986 468999999
Q ss_pred cCCccccCceeecchHHHHhhcCCC
Q 006121 611 ADDTMNLGGIKALLLPLTFLSSPRS 635 (660)
Q Consensus 611 ~dd~iki~G~rv~~~eIE~~L~~~~ 635 (660)
.|++++++|.+|...+||++|.+..
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred cCCEEEeeeeECCHHHHHHHHHHHH
Confidence 9999999999999999999998543
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-08 Score=107.10 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=40.0
Q ss_pred EeeCceEEEec----CceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 591 y~TGDl~~~~~----dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
||+||+++... ...|.|+||.+++++++|.+|...+||.+|.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 99999999974 57899999999999999999999999999973
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-10 Score=125.91 Aligned_cols=128 Identities=12% Similarity=0.002 Sum_probs=100.7
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC----Ccc--cCC
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLY--WFP 88 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~----~~~--~~~ 88 (660)
+.+++++..+|.++|++++....++ +||+|||++ |++.+++.|+. +..|+||++|++++..... ... ..+
T Consensus 377 lr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~--~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
T 2jgp_A 377 MRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDL--SRNPLFDTVFTFQNSTEEVMTLPECTLAPFM 453 (520)
T ss_dssp EEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCT--TSCSSCSEEEEEECCCCSCCCCSSEEEEECS
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCC--CCCCcEEEEEEEecCCCccccCCCceeEEee
Confidence 3456667778999999999888777 899999999 99999988874 4456699999999865322 111 111
Q ss_pred Chhh--hcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccc
Q 006121 89 SLDQ--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAP 151 (660)
Q Consensus 89 ~~~~--~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~ 151 (660)
.... ..+|||.+.+.+.++++...+ |++ ++|++++++++.++|.++|+++..+++.+.
T Consensus 454 ~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l 514 (520)
T 2jgp_A 454 TDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRL 514 (520)
T ss_dssp SCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBG
T ss_pred cCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCch
Confidence 1223 678999998888888999999 999 999999999999999999999865555443
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=101.89 Aligned_cols=133 Identities=15% Similarity=-0.015 Sum_probs=79.9
Q ss_pred ccCccE--EEeecCCCChhhHHHHHhhCCCCcee-ccccccccccccccCCcCCCCccccc-CcCCCCceE-EEE--cCC
Q 006121 470 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGL-VIL--DEC 542 (660)
Q Consensus 470 l~~lr~--v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~i-G~p~~~~~~-~vl--d~~ 542 (660)
+|+++. ++++|.. ..-...++...++.+++ ..|+.||+-.. +...+.. .++.. ...+++.-. ..+ |+.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIA-ANVTPRL--SPEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEE-ECCCTTS--CTTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeee-eecCCCC--CccccceeecCCcEEEEEEecccc
Confidence 567753 3455532 22234455445567776 99999997432 2211111 11111 123333311 122 322
Q ss_pred ---------CCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEeeCceEEEecC----ceEEEEe
Q 006121 543 ---------GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQG 609 (660)
Q Consensus 543 ---------~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~d----G~l~~~G 609 (660)
...|..|+. +||.|+..- + .+ =|++||+++...- ..+.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~~--YelviTt~~-G-------------L~----------RYr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEE--YEVVITNYA-G-------------LY----------RYRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTCE--EEEEEESTT-S-------------CS----------SEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCCe--EEEEEeecc-c-------------ee----------eEEcCCEEEEecccCCCcEEEEEe
Confidence 135677886 999983220 1 01 1999999998753 5799999
Q ss_pred ccCCccccCceeecchHHHHhhcC
Q 006121 610 RADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 610 R~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
|.|++++++|.++...+||.+|.+
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred ecCCeEEeeeeECCHHHHHHHHHH
Confidence 999999999999999999999974
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-07 Score=80.72 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=42.0
Q ss_pred eccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 609 GRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 609 GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.|.|||||++|+||+|.|||++|.+||+|.+++|++..+.. +..+.++++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~ 51 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVE 51 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEE
Confidence 49999999999999999999999999999998888876554 445665543
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-08 Score=111.94 Aligned_cols=128 Identities=7% Similarity=-0.114 Sum_probs=87.0
Q ss_pred CCCchh--HHHHHHHHHHHhhhccCC-ChHHHHHHHHHhH---hcCCCCCCCcchhHHHHHHhhccccCCCCC-------
Q 006121 17 GLKLEE--AEEFDKILKQVISCSKGL-DAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGPP------- 83 (660)
Q Consensus 17 ~~~~~~--~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~---~l~~~r~~~~~~~plfqv~~~~~~~~~~~~------- 83 (660)
.+.+++ ..+|.++|++++....++ +| ++||++ |++ .|+..|.. ...|+||++|+|++......
T Consensus 303 r~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~--~~~~lf~~~~~~~~~~~~~~~~~~~~~ 378 (493)
T 4hvm_A 303 GVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPP--RVAARWDVAVHLCRNAPSSSLTRGERT 378 (493)
T ss_dssp EEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTT--BTTGGGCEEECC---------------
T ss_pred EEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCC--CCCcceeEEEEEEecCCcccccccccc
Confidence 344555 678999999999887777 89 999999 999 89888774 45566999999997553321
Q ss_pred -----cccCCCh----------------hhhcccc---hHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHH
Q 006121 84 -----LYWFPSL----------------DQSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEI 138 (660)
Q Consensus 84 -----~~~~~~~----------------~~~~~~d---l~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~ 138 (660)
....+.. ...++|| +.+.+...++++...+ |+. ++| +++++++.++|.+
T Consensus 379 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~~~ 452 (493)
T 4hvm_A 379 LAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGLDA 452 (493)
T ss_dssp -----CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHHHH
T ss_pred ccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHHHH
Confidence 1111000 1124677 8888888888999999 999 999 9999999999999
Q ss_pred HHhhcccceeccceec
Q 006121 139 ALKEISVVFREAPKCI 154 (660)
Q Consensus 139 ~l~~~~~~~~~~~~~~ 154 (660)
+|+++..+++.++.++
T Consensus 453 ~L~~~~~~p~~~l~~l 468 (493)
T 4hvm_A 453 AMAQAVADPSAPLPHS 468 (493)
T ss_dssp HHHHHHHCTTSBCCC-
T ss_pred HHHHHHhCCCCccccC
Confidence 9999987777666553
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-08 Score=109.27 Aligned_cols=132 Identities=7% Similarity=-0.123 Sum_probs=98.9
Q ss_pred HcCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC--Cccc--CCC
Q 006121 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PLYW--FPS 89 (660)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~--~~~~--~~~ 89 (660)
++.++.++..+|.+++++++....++ +||++||++ |++.++..+. . .|+|+++|++++..... .... ...
T Consensus 280 plr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~~--~--~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 354 (436)
T 1l5a_A 280 PLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--Q--SYFMSPFINILPFESPHFADCQTELKVL 354 (436)
T ss_dssp EEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--C--CBCCCSEEEEECCCCCCCTTCEEEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhccccc--C--CCccceEEEeeccCccccCCCeeEEEec
Confidence 34566777788999999999888777 899999999 9999976553 3 35699999999755321 1100 011
Q ss_pred hhhhcccchHHHHH-HhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccc---eeccceecccC
Q 006121 90 LDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDR 157 (660)
Q Consensus 90 ~~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~ 157 (660)
.....+ ||.+.+. ..++++...+ |+. ++|++++++++.++|.++|+++..+ ++.++.++|.+
T Consensus 355 ~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 355 ASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp EECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred CCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 122233 7777776 4567888999 999 9999999999999999999999877 77776666444
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=97.03 E-value=1.5e-05 Score=85.99 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=83.7
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCCChHHHHHHHHHhHhcCCC---CCCCcchhHHHHHHhhccccCCCC----CcccC-
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW---HPHGLHQLVYYSVYNDWDASIKGP----PLYWF- 87 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~Pf~~~lv~~l~~~---r~~~~~~~plfqv~~~~~~~~~~~----~~~~~- 87 (660)
+.+.+++..+|.++|++++....++.||++||+. + +.+... +....... ++++|++++..... .....
T Consensus 312 lr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~--p~~~f~~~~~~~~~~~~~~~~~~~ 387 (466)
T 2xhg_A 312 VLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQ--PEVTFNYLGQFDADMRTELFTRSP 387 (466)
T ss_dssp EEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCC--CSEEEEEEEECCTTCSSSSCEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCC--CeEEEeecCcccccccCCceeccc
Confidence 3445556678999999988886656899999986 5 566543 22223344 35889987532211 11100
Q ss_pred -CC-------------hhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccce
Q 006121 88 -PS-------------LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (660)
Q Consensus 88 -~~-------------~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~ 147 (660)
+. +....+++|.+.+...++++...+ |++ ++|++.+|+++.++|.++|+++..++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~~ 457 (466)
T 2xhg_A 388 YSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAHC 457 (466)
T ss_dssp TCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 012237788887766778899999 999 99999999999999999999875443
|
| >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=92.79 E-value=0.0066 Score=63.93 Aligned_cols=107 Identities=10% Similarity=-0.101 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhhccCC-ChHHHH-----HHHHHhHhcCCCCCCCcchhHHHHHHh-hccccCCCC---CcccC--CCh
Q 006121 23 AEEFDKILKQVISCSKGL-DAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYN-DWDASIKGP---PLYWF--PSL 90 (660)
Q Consensus 23 ~~~f~~~l~~~~~~~~~~-~hq~~P-----f~~~lv~~l~~~r~~~~~~~plfqv~~-~~~~~~~~~---~~~~~--~~~ 90 (660)
..+|.+++++++....++ +||++| |++ +++.+++. .|+ +++| ++....... ..... ...
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~-------~pl-~~~~~n~~~~~~~~~~~~~~~~~~~~~ 367 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG-------LPP-LVFCTDATSFPTMRTPPGLEIEDIKGQ 367 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS-------SCC-CEEEECCCCCCSCCCCTTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC-------CCc-eEEEecCCcCCCCCCCCCceeEeeecc
Confidence 346888888888887776 899995 889 88888642 233 4455 443222111 11110 001
Q ss_pred hh-hcccchHHH-HHHhCCcccccccCCCCccHHHHHHHHhhCHHHHHHHHHhhcccce
Q 006121 91 DQ-SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (660)
Q Consensus 91 ~~-~~~~dl~~~-~~~~~~~~~~~~y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~ 147 (660)
.. ..++|+.+. +...++++...+|++ + .+++++.++|.++|+++..++
T Consensus 368 ~~~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~~ 417 (422)
T 1q9j_A 368 FYCSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSEY 417 (422)
T ss_dssp ECCBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTSC
T ss_pred cccCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcCc
Confidence 11 346677766 555667776666877 4 889999999999999986443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=3.2 Score=43.36 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=75.4
Q ss_pred CCCcEEEEEecCCCCCC--CceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCcEEEec
Q 006121 189 EDNTVAIVWREDRCDES--AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 189 ~pd~~Av~~~~~~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--s~~~vva~lA~lkaGa~~vpl 263 (660)
.++.+|.+....+ .++ ....+|.+.+...+..+++.+... +.++|++...++- ....+..+++.+..|+..+++
T Consensus 88 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 88 PQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp CGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred ChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4566665544332 233 334689999998888888877778 9999999999986 344455678899999999987
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecc
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
+. ..++++...+++.++.+++....
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 55 47889999999999999988764
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=87.29 E-value=3.8 Score=42.86 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCCcEEEEEecCCCCCCC--ceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEec
Q 006121 189 EDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 189 ~pd~~Av~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s--~~~vva~lA~lkaGa~~vpl 263 (660)
.++.+|.+....+ .++. ...+|.+.+...+..+++.+... +.++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4566665443322 2333 34679999998888888878778 99999999998863 44455678889999999987
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecc
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
++. ..+++...+++.++.++.....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 654 7888999999999999988764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=4.4 Score=42.25 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=76.3
Q ss_pred CcEEEEEecCCCCCC-CceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCcEEEecCCC
Q 006121 191 NTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADS 266 (660)
Q Consensus 191 d~~Av~~~~~~~~~~-~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--s~~~vva~lA~lkaGa~~vpl~p~ 266 (660)
+.+|.+....++.+. ....+|.+.+...+..+++.+... +.++|++...++- ....+..+++.+..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 777766544332222 344689999999999898888888 9999999999874 445566778899999999887654
Q ss_pred CCHHHHHHHHHhcCeeEEEeecc
Q 006121 267 FAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 267 ~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
.++++...+++.++.+++....
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHH
Confidence 6788899999999999988764
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=81.83 E-value=7.8 Score=41.29 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=72.9
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHH---HhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. .+..+|++.+...+. ......++.++|++...++-+... +..+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 567788764 135689888755443 344456899999999888777553 3457789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (660)
....+++...+++.++..+...+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7788899999999999999988776555
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=81.82 E-value=11 Score=40.44 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=73.7
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++....+ .+..+|.+.+...+ .......++.++|++...++-+...- ..+|+++..|+..+.++.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 4577777643211 34568888775443 34445568999999998888775533 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (660)
....+++...++..++.++.+.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77788999999999999999988765544
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=81.16 E-value=4.2 Score=44.03 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=73.7
Q ss_pred CCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCC
Q 006121 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (660)
Q Consensus 355 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~ 431 (660)
|+.+|.+.+..+.++ ..+|.+.+...+ +......++.++|++...++-+... +..+|+++..|+..+.++..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 455555544444433 468888875443 3344456899999999888876553 34567999999999999877
Q ss_pred CChhhHHHHHHHcCCeEEeecHHHHHHHH
Q 006121 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (660)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (660)
...+++...++..++.+++..+..+..+.
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 137 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKIL 137 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHHH
Confidence 78889999999999999998877665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 660 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 9e-62 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-53 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 6e-32 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-28 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-27 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-22 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 5e-17 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 215 bits (548), Expect = 9e-62
Identities = 121/517 (23%), Positives = 206/517 (39%), Gaps = 40/517 (7%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGGTWLPGSVLNIAECCLLPSN 184
K ++ P+ +W K + + + + + + W LN+A CL
Sbjct: 25 KQSINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCL--DR 80
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
H ++ + AI+W D +S ++Y+EL V AN L + KGD +AI MPM
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMV 138
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
A + LA G V I F+ +A + S ++ + T D +R GR PL V
Sbjct: 139 PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNV 198
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSW---KDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
A LK + ++ + + + D+ W +D + P + +
Sbjct: 199 DDA--LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSS 418
IL++SG+TG+PK + T + A + ++ D GD+Y ++GWV G +L+
Sbjct: 257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316
Query: 419 FLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKI 473
GAT +++G P + + V V +L T P+ ++A +EG D + +
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376
Query: 474 RSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT 531
R S GE N + W K ++++ TE + ++ L A S
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSATR 435
Query: 532 MTAG--LVILDECGVPYPDDQP---CVGE--VGLFPLYLGASDRLLNADHEEVYFRGMPM 584
G ++D G P + + G G +R E+ YF
Sbjct: 436 PFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERF-----EQTYFSTFKN 490
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
GD +R GY + GR DD +N+ G +
Sbjct: 491 M-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHR 522
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 191 bits (485), Expect = 3e-53
Identities = 104/513 (20%), Positives = 192/513 (37%), Gaps = 25/513 (4%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH----GGTWLPGSVLNIAECCLL 181
K ++E P ++ + + + + + K+ W LN C+
Sbjct: 8 KESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV- 65
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAID 239
H K N AI++ D + +TYKEL E+V VA L KGD +A+
Sbjct: 66 -DRHALKTPNKKAIIFEGDEPGQGYS--ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A+I LAI G + + F++ + R+ +K + T D RGG+
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
V A V + + +D + + YY + +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFS 417
+L++SG+TG PK + + + + D DV+ ++GW+ G +++
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 418 SFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTK 472
L G +++G+P ++ ++ + + VT P+ ++ + +E
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 473 IRSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQ--GSLLQPQAFGAFS 528
+R S GE + W S K I+++ TE S + + P G+ S
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 422
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 588
V+LD + G + + + + + +H+ + Y G
Sbjct: 423 FPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK-NHDRYLDTYLNPYPGY 481
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
GD + GYI + GR DD +N+ G +
Sbjct: 482 Y--FTGDGAAKDKDGYIWILGRVDDVVNVSGHR 512
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 128 bits (321), Expect = 6e-32
Identities = 84/455 (18%), Positives = 138/455 (30%), Gaps = 55/455 (12%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ TY E+ ++ + L + GD +A
Sbjct: 20 AAALFGRKEVVSRLHTGEVHR----TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
R + Y A+ G V+ + + +EIA L ++ K + +L
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------------ 123
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
++AI + + E+ PV P A + +
Sbjct: 124 ---PLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD----PVRVPERAACGMAY 176
Query: 364 SSGTTGEPKA--IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
++GTTG PK L A L DV + V + +++ L
Sbjct: 177 TTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 236
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GA L S + GVT VP++ A + G +R G
Sbjct: 237 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGS 296
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---GSLLQPQAFGAFSTATMTAG--- 535
+ + + + G TE S +Q S L+ + T G
Sbjct: 297 AAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354
Query: 536 ----LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYK 586
L + DE G P P D +GEV + Y G + +A + +F
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF------- 407
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
R GDI GY+ ++ R D + GG
Sbjct: 408 -----RTGDIAVWDEEGYVEIKDRLKDLIKSGGEW 437
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 118 bits (296), Expect = 1e-28
Identities = 68/462 (14%), Positives = 140/462 (30%), Gaps = 36/462 (7%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
P E L +R I + + + + +TY E E + +A A+
Sbjct: 12 YPLEDGTAGE--QLHKAMKRYALVPGTIAFTDAHIEVN----ITYAEYFEMSVRLAEAMK 65
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ I + +++ + L + G V D + RE+ + +S+ +F
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346
L+ ++ K I++ + + G ++ +Y P
Sbjct: 126 SKKGLQKILNVQKKLPIIQ----KIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP- 180
Query: 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWP 403
++ + I+ SSG+TG PK + + +
Sbjct: 181 ---ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 237
Query: 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 463
G + G + L E F + +QD + VP+L + +
Sbjct: 238 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQDYKIQSALLVPTLFSFFAKST 296
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523
++ D + + AS G + + ++ + I + G TE +SA + +
Sbjct: 297 LIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-ITPEGDDK 355
Query: 524 FGAFSTATMTAGLVILD-ECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYF 579
GA ++D + G +Q CV + Y+ N +
Sbjct: 356 PGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN------NPEATNALI 409
Query: 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
GDI + + R + G +
Sbjct: 410 DKDGWL------HSGDIAYWDEDEHFFIVDRLKSLIKYKGYQ 445
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 113 bits (284), Expect = 3e-27
Identities = 73/437 (16%), Positives = 138/437 (31%), Gaps = 57/437 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N VAIV ++ +TY EL + +A K + I M ++ I
Sbjct: 38 NNVAIVCENEQ--------LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LA++ AG V I + I L S+A+ + TQ ++
Sbjct: 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH----------------- 132
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
++ I + + + E+D R V + + ++++SGTTG
Sbjct: 133 ---LIHNIQFNGQVEIFEED----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTG 179
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK +++ D ++ + +F + L GA+L +
Sbjct: 180 NPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL 239
Query: 430 GSPLE--RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ F +++ +TV+ L+ I++ + G ++
Sbjct: 240 KDTINDFVKFEQYINQKEITVITLP------PTYVVHLDPERILSIQTLITAGSATSPSL 293
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
K Y T ++ ++ + I+DE
Sbjct: 294 VNKWKEKVTYINAYGPTETTICATTWVATK-ETIGHSVPIGAPIQNTQIYIVDENLQLKS 352
Query: 548 DDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
+ C+G GL Y + F P G L + GD + G
Sbjct: 353 VGEAGELCIGGEGLARGYWK------RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 406
Query: 605 IIVQGRADDTMNLGGIK 621
I GR D+ + + G +
Sbjct: 407 IEYLGRIDNQVKIRGHR 423
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 98.1 bits (243), Expect = 4e-22
Identities = 74/434 (17%), Positives = 127/434 (29%), Gaps = 37/434 (8%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ +AI +Y+EL + +A + + D + + +P +
Sbjct: 40 DRIAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ G + V S + EI ++A D A
Sbjct: 92 IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG--------FDYRSLARQ 143
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
LP + N + E+ L +D + P + + S G+TG
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAF--------LQLSGGSTG 195
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALY 428
K IP T I L VY + L +
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488
SP ++ VT+ VP L W + D + ++ G + +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAGLVILDECGVPYP 547
+ + + + + G E Y + + + + D+
Sbjct: 316 RRVKAV-FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374
Query: 548 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 607
GE G L + E + G R GDI++ T GYI+V
Sbjct: 375 P-----GETGH--LLTRGPYTIRGYYKAEEHNAASFTEDGFY--RTGDIVRLTRDGYIVV 425
Query: 608 QGRADDTMNLGGIK 621
+GRA D +N GG K
Sbjct: 426 EGRAKDQINRGGEK 439
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 82.4 bits (202), Expect = 5e-17
Identities = 66/415 (15%), Positives = 111/415 (26%), Gaps = 40/415 (9%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + A + G+ I
Sbjct: 90 SAELAELIKRGEMTAAVIAV------------------GRQVADAIFQSGSGARIIFLGD 131
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI--PWTQLSSIRCTA 386
+ + S P I ++SGTTG PKA P S
Sbjct: 132 LVRDGEPYSYGPPIEDPQR------EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446
+ +V L V+G + + L + + VQ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 447 TVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
T L P+ + A G L +R G T + D + + +
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT--MPDAVLETVHQHLPGEKVNI 303
Query: 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 564
GT + + + A + + I + + V
Sbjct: 304 YGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
A E + + G + + GR DD + GG
Sbjct: 364 GYLNQPQATAE--KLQDGWYRTSDVAVWTPE-------GTVRILGRVDDMIISGG 409
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 660 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 98.2 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 89.92 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 89.07 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 82.42 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 82.13 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 81.32 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.3e-76 Score=669.59 Aligned_cols=524 Identities=23% Similarity=0.333 Sum_probs=422.3
Q ss_pred CCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCC-CCCCCCcCCCCccchhhhcccccCcCCCCCCcEEE
Q 006121 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (660)
Q Consensus 117 ~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av 195 (660)
.+.+|+.+.+++++++..||..+.+. ..|.+++.++++.... .....+||.++.+|.++++++++. +.+||++|+
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh~--~~~~d~~Al 91 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAI 91 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEE
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHhh--eeEECCCcccccCccCCCCCCCeeCCCChhhHHHHHHHHHH--HhCCCCEEE
Confidence 34577899999999999999999986 5688888888765432 233457999999999999999876 678999999
Q ss_pred EEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 006121 196 VWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274 (660)
Q Consensus 196 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~ 274 (660)
++.+. +++..+++||+||.++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|++|.++++++.+
T Consensus 92 i~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~ 169 (643)
T d1pg4a_ 92 IWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG 169 (643)
T ss_dssp EEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHH
T ss_pred EEEec--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHH
Confidence 98765 445677999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeeEEEeecceeecCccccchhhHhccC-----C--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCC
Q 006121 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----P--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (660)
Q Consensus 275 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (660)
+++++++++||+++...+..+..+....+.... . ..++++...+..... .......+.+....... .
T Consensus 170 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~ 243 (643)
T d1pg4a_ 170 CIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----E 243 (643)
T ss_dssp HHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----C
T ss_pred HHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc-ccccchhhhhhhcccCc-----c
Confidence 999999999999998887777766655544322 1 233444333322111 11122333333332222 2
Q ss_pred CCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHH-HHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEE
Q 006121 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATL 425 (660)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~l 425 (660)
..+...+++|++||+|||||||+||||+++|++++.. .......++++++|++++.+|++|+.++ +.++++|++|+++
T Consensus 244 ~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~ 323 (643)
T d1pg4a_ 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATT 323 (643)
T ss_dssp CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEE
T ss_pred cCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence 3334567899999999999999999999999997544 4444556789999999999999999987 4578899999999
Q ss_pred EEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhCC--CC
Q 006121 426 ALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YN 498 (660)
Q Consensus 426 v~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~ 498 (660)
+++++. +++..++++|++++||+++++|++++.|++... ....++++||.+++|||++++++.+++.+.++ ++
T Consensus 324 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~ 403 (643)
T d1pg4a_ 324 LMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403 (643)
T ss_dssp EEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCS
T ss_pred EEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCc
Confidence 998753 478899999999999999999999999987643 34567899999999999999999999998875 57
Q ss_pred ceeccccccccccccccCCc-CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCccccc-Cccccc
Q 006121 499 AIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL-NADHEE 576 (660)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~-~~~~t~ 576 (660)
+++|.||+||+++.++...+ ..+.+.+++|+|++|++++|+|++|++++.|+. |||+|...+.+...+|+ +++.+.
T Consensus 404 ~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~--Gel~v~~~~p~~~~~~~~~~~~~~ 481 (643)
T d1pg4a_ 404 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFE 481 (643)
T ss_dssp CEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHH
T ss_pred eEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCce--EEEEEecCCCcccccccCChhhch
Confidence 79999999999875554333 234567899999999999999999999999996 99999322222222222 344443
Q ss_pred ccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeee
Q 006121 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIF 655 (660)
Q Consensus 577 ~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a 655 (660)
+.|. ....+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|++|+|+...+.. ++.+++
T Consensus 482 ~~~~----~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a 557 (643)
T d1pg4a_ 482 QTYF----STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 557 (643)
T ss_dssp HHHH----SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hhhc----ccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEE
Confidence 3332 22344999999999999999999999999999999999999999999999999999999887654 567888
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
|+.
T Consensus 558 ~Vv 560 (643)
T d1pg4a_ 558 YVT 560 (643)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-72 Score=640.20 Aligned_cols=523 Identities=21% Similarity=0.287 Sum_probs=412.2
Q ss_pred cHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCC----CCCCCCcCCCCccchhhhcccccCcCCCCCCcEEE
Q 006121 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK----SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (660)
Q Consensus 120 ~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av 195 (660)
+|+.+++++++++..||.++++.. ..|.+++++++..... ..+...||.++.+|.+++++++++ +++||++|+
T Consensus 2 ~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a--~~~pd~~Al 78 (640)
T d1ry2a_ 2 DYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKTPNKKAI 78 (640)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTCTTSEEE
T ss_pred CHHHHHHHHHhCHHHHHHHHHHhh-eeEecCCeEeeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHH--hhCCCCEEE
Confidence 578999999999999999998886 6899999888755332 234558999999999999999876 789999999
Q ss_pred EEecCCCCCCCceeecHHHHHHHHHHHHHHHH-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHH
Q 006121 196 VWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIA 273 (660)
Q Consensus 196 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~ 273 (660)
++.+. +.+..+++||+||.++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.++++++.
T Consensus 79 i~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~ 156 (640)
T d1ry2a_ 79 IFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 156 (640)
T ss_dssp EEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHH
T ss_pred EEEec--CCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHH
Confidence 98754 3456679999999999999999997 67 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeeEEEeecceeecCccccchhhHhccC---CC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCC
Q 006121 274 TRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 348 (660)
Q Consensus 274 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (660)
++++++++++++++....+..+.......+.... .. ....+.................+........ ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 231 (640)
T d1ry2a_ 157 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK-----TYY 231 (640)
T ss_dssp HHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC-----SCC
T ss_pred HHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccccc-----ccc
Confidence 9999999999999988776666655444433322 11 1222222221111111111112222222111 122
Q ss_pred CCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHH-HhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEE
Q 006121 349 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (660)
Q Consensus 349 ~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (660)
......+++++||+|||||||+||||+++|++++.... .....++++++|++++.+|++|+.+. +.++++|+.|++++
T Consensus 232 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 311 (640)
T d1ry2a_ 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATL 311 (640)
T ss_dssp CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEE
T ss_pred ccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEE
Confidence 33455678999999999999999999999999766544 44446789999999999999999986 56889999999999
Q ss_pred EecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhCC--CCc
Q 006121 427 LYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNA 499 (660)
Q Consensus 427 ~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~ 499 (660)
++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ ...
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~ 391 (640)
T d1ry2a_ 312 VFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391 (640)
T ss_dssp EECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSC
T ss_pred EecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcce
Confidence 98753 377899999999999999999999999987643 24567999999999999999999999998886 346
Q ss_pred eeccccccccccccccCCc--CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e--ccccCCcccccCccc
Q 006121 500 IIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADH 574 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~--~~y~~~~~~~~~~~~ 574 (660)
+++.||+||++........ ..+.+.+++|+|++|++++|+|+++...+.+..+.|||++ + |++..+ ++.+++.
T Consensus 392 i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~g--y~~~~e~ 469 (640)
T d1ry2a_ 392 IVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART--IWKNHDR 469 (640)
T ss_dssp EEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCE--ETTCHHH
T ss_pred EEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccc--cccCHHH
Confidence 9999999999865443322 3445678999999999999999766544322222499999 2 444432 3336676
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Cccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l 653 (660)
|.+.|..+ ..+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|++|+|+...+. .++.+
T Consensus 470 t~~~~~~~----~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~ 545 (640)
T d1ry2a_ 470 YLDTYLNP----YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 545 (640)
T ss_dssp HHHHHTSS----STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCC
T ss_pred HHhhhccC----CCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEE
Confidence 76666432 33499999999999999999999999999999999999999999999999999999887654 35567
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++|+.
T Consensus 546 ~a~Vv 550 (640)
T d1ry2a_ 546 AAFVV 550 (640)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88763
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.6e-64 Score=554.41 Aligned_cols=456 Identities=19% Similarity=0.154 Sum_probs=350.1
Q ss_pred cCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHH
Q 006121 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245 (660)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~ 245 (660)
|.-+...+.. +++++++ +++||++|+++... ++++++||+||+++++++|++|.+. +++||+|+|+++|+++
T Consensus 5 ~~~~~~~~l~-~~l~~~a--~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e 77 (534)
T d1v25a_ 5 TMMDEELNLW-DFLERAA--ALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR 77 (534)
T ss_dssp CBCCCCCCTH-HHHHHHH--HHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred ccCCCCCCHH-HHHHHHH--HHcCCCeEEEEecC----CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHH
Confidence 3333444443 3444443 89999999998765 4566899999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCC
Q 006121 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325 (660)
Q Consensus 246 ~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 325 (660)
+++++|||+++|++++|++|.++.+++.++++++++++++++.... +....+....+.....+.......
T Consensus 78 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (534)
T d1v25a_ 78 HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKAP---- 147 (534)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCCC----
T ss_pred HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh------hhHHHHhhcccccceeEEeecccc----
Confidence 9999999999999999999999999999999999999999987543 233333333333222222111110
Q ss_pred CCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh--hHhcCCCCCCEEEEe
Q 006121 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWP 403 (660)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~~l~~ 403 (660)
......... . ..........++++++++|||||||.||||+++|+++++..... ...+.....+++++.
T Consensus 148 -~~~~~~~~~-~-------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 218 (534)
T d1v25a_ 148 -EGYLAYEEA-L-------GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPV 218 (534)
T ss_dssp -TTCEEHHHH-C-------CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEEC
T ss_pred -ccccccccc-c-------cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccc
Confidence 001111111 0 01122334567899999999999999999999999998655433 334566789999999
Q ss_pred cCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCC
Q 006121 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETS 483 (660)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l 483 (660)
+|+.|..+....+.+++.|+++++.....++..+..++.++++|++.++|+++..+++.......++++||.+++||+++
T Consensus 219 ~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~ 298 (534)
T d1v25a_ 219 VPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 298 (534)
T ss_dssp SCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCC
T ss_pred cchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCC
Confidence 99999999888888999999999988778999999999999999999999999999876555567789999999999999
Q ss_pred ChhhHHHHHhhCCCCceeccccccccccccccCCcCCC----------CcccccCcCCCCceEEEEcCCCCcCCCCCCce
Q 006121 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (660)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~----------~~~~~iG~p~~~~~~~vld~~~~~vp~G~~gi 553 (660)
+.+..+++++. +.++++.||+||++.+++....... ...+++|+|++|++++|+|++++++|.+..++
T Consensus 299 ~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~ 376 (534)
T d1v25a_ 299 PRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL 376 (534)
T ss_dssp CHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC
T ss_pred CHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCee
Confidence 99999888754 4789999999999986554332111 12468999999999999999999999854335
Q ss_pred eEEEE-eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhc
Q 006121 554 GEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSS 632 (660)
Q Consensus 554 Gel~v-~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~ 632 (660)
|||+| +++...+ |+.+++.|++.|..++ ||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 377 Gel~v~g~~v~~g--Y~~~~~~t~~~~~~dg------~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~ 448 (534)
T d1v25a_ 377 GEVQLKGPWITGG--YYGNEEATRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 448 (534)
T ss_dssp EEEEEESTTSBSS--CBTCHHHHHTTBCTTS------CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC--
T ss_pred EEEEEcCCcccce--ecCChhhhhhhcccCC------CCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHH
Confidence 99999 3332221 1226777888886544 9999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEEeecC-cceeeeecc
Q 006121 633 PRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 633 ~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
+||+|++|+|+...+.. +..+++|+.
T Consensus 449 ~~~~V~~a~v~~~~~~~~~~~l~a~vv 475 (534)
T d1v25a_ 449 GHPKVKEAAVVAIPHPKWQERPLAVVV 475 (534)
T ss_dssp --------CEEEEECSSSSEEEEECC-
T ss_pred hCCCcceEEEEEEECCCCCeEEEEEEE
Confidence 99999999999877654 446777764
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=4.3e-62 Score=541.64 Aligned_cols=439 Identities=15% Similarity=0.117 Sum_probs=342.0
Q ss_pred CCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCC
Q 006121 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (660)
Q Consensus 188 ~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~ 266 (660)
..|+++|+++.+. .+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|+++.
T Consensus 32 ~~P~~~a~~d~~~------~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~ 105 (541)
T d1lcia_ 32 LVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105 (541)
T ss_dssp TSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTT
T ss_pred CCCCeEEEEeCCC------CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCC
Confidence 4599999987543 13899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC--CCC
Q 006121 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY--HPR 344 (660)
Q Consensus 267 ~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 344 (660)
++.+++.++|++++++++|+++... +....+....+....++....... .....++......... ...
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T d1lcia_ 106 YNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNE 175 (541)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCT
T ss_pred CCHHHHHHHHHhccceEEeeecccc------ccchhccccccccceeeeecCCcc----ccccchhhhhhhhhccccccc
Confidence 9999999999999999999998542 334444445554333332221111 0112222222221111 001
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh---cCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
....+.....++++|||+|||||||.||||+++|++++....+.... ..+.+++++++.+|+.|..+....+..+..
T Consensus 176 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 255 (541)
T d1lcia_ 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255 (541)
T ss_dssp TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred cccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 11223344567899999999999999999999999998766655433 357789999999999999999888888999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+..+... ..+......++..+++|.+.++|+++..++........++++||.+++||+++++...+++.+.++...++
T Consensus 256 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~ 334 (541)
T d1lcia_ 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIR 334 (541)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCB
T ss_pred cccccccc-ccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceee
Confidence 99888765 56778899999999999999999999999988777777889999999999999999999999888767799
Q ss_pred ccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccc
Q 006121 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHE 575 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t 575 (660)
+.||+||+++.++.. .......+++|+|++|++++|+| +++++++.|++ |||+| + .||++ +++.+
T Consensus 335 ~~YG~TE~~~~~~~~-~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~~~ 405 (541)
T d1lcia_ 335 QGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN------NPEAT 405 (541)
T ss_dssp CEECCGGGSSCSEEC-CCC---CCCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT------BHHHH
T ss_pred ecCCccccCceEEec-CcccCCCCccccccCCCEEEEEECCCCcCCCCCCe--EEEEEccCccCCeeCC------Chhhh
Confidence 999999998765443 34455678999999999999999 57999999997 99999 3 34554 44555
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~ 654 (660)
...|. +++||+|||+|++++||+++++||.||+||++|+||+|.|||++|.+||+|.+|+|++..+.. +..++
T Consensus 406 ~~~~~------~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~ 479 (541)
T d1lcia_ 406 NALID------KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 479 (541)
T ss_dssp HHHBC------TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred hhccc------CCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEE
Confidence 55444 344999999999999999999999999999999999999999999999999999998877654 45677
Q ss_pred eecc
Q 006121 655 FYFS 658 (660)
Q Consensus 655 a~~~ 658 (660)
+|++
T Consensus 480 a~v~ 483 (541)
T d1lcia_ 480 AVVV 483 (541)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=9.2e-61 Score=527.67 Aligned_cols=419 Identities=18% Similarity=0.161 Sum_probs=345.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 32 ~a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l 103 (514)
T d1amua_ 32 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 103 (514)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEe
Confidence 4589999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|++.... ..+............... ....
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~-----------------~~~~---- 153 (514)
T d1amua_ 104 DIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEED-----------------TIKI---- 153 (514)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCS-----------------TTTT----
T ss_pred CCCCCHHHHHHHHhccCCcEEEEehhhh---------hhhhhhcccccccccccc-----------------cccc----
Confidence 9999999999999999999999987532 122222211111111100 0000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
........+..++++|+|+|||||||.||+|+++|+++..........+....++++++..|+.|..+++.++.+++.|+
T Consensus 154 ~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~ 233 (514)
T d1amua_ 154 REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGA 233 (514)
T ss_dssp SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred cccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 01111223446789999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEEecC--CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 424 TLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 424 ~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
++++... ..+....++.+..+.++.+..+|...... ...+++++|.+++||+++++++..++.+ +..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~ 304 (514)
T d1amua_ 234 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE---KVTYI 304 (514)
T ss_dssp EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEE
T ss_pred cccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc---ceeEE
Confidence 9999753 23567788999999999999999875532 3456889999999999999999877765 46799
Q ss_pred ccccccccccccccCCc--CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 502 ESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
+.||+||++.+.+.... ......++.|+++++..+.+.|++++++|.|+. |||+| + +||++ +++.
T Consensus 305 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~--GEl~v~~~~~~~gY~~------~~~~ 376 (514)
T d1amua_ 305 NAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RPEL 376 (514)
T ss_dssp EEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHH
T ss_pred EeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCe--eEEEEccCcccccccc------cccc
Confidence 99999999976543322 233445688999999999999999999999996 99999 3 34444 7778
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
+.+.|..+++.++++||+|||+|++|+||+|+|+||+||+||++|++|+|.+||++|.+||+|++|+|+...+.. +..+
T Consensus 377 ~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~ 456 (514)
T d1amua_ 377 TSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 456 (514)
T ss_dssp HHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEE
T ss_pred cceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEE
Confidence 888999999999999999999999999999999999999999999999999999999999999999999877654 4467
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++++.
T Consensus 457 ~a~v~ 461 (514)
T d1amua_ 457 CAYFV 461 (514)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.1e-59 Score=519.21 Aligned_cols=434 Identities=17% Similarity=0.158 Sum_probs=344.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 ~a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl 105 (536)
T d1mdba_ 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (536)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCeEEEECCE--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEec
Confidence 3479999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++++++........ ..........+.....+.... ......++++..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------ 171 (536)
T d1mdba_ 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPTLKNIIVAGE-------AEEFLPLEDLHT------ 171 (536)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTTCCCEEEESC-------CTTSEEGGGCCC------
T ss_pred CCCCCHHHHHHHHHhhccceEeccchhhhhhhh-hhhhhhhhccccccceeeeec-------cccccchhhccc------
Confidence 999999999999999999999998754211110 111111111111111110000 011122222211
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~~ 421 (660)
.........++|+++|+|||||||.||||+++|+++...+.+....+++.+++++++..++.|..++. .++..+..
T Consensus 172 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~ 249 (536)
T d1mdba_ 172 --EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (536)
T ss_dssp --CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred --CCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccc
Confidence 11223456789999999999999999999999999999999888899999999999999999998874 23344444
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|.+++..+ .+++..++..+++++++.+..+|..+..+..........+++++.+++||+++++....++.+.++ ..++
T Consensus 250 g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~-~~~~ 327 (536)
T d1mdba_ 250 GGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQ 327 (536)
T ss_dssp TCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-SEEE
T ss_pred cccccccC-CCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccC-ceee
Confidence 56555544 678999999999999999999999999988766556667899999999999999999998888775 6788
Q ss_pred ccccccccccccccCCcCCCCcccccCcCCC-CceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccc
Q 006121 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHE 575 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t 575 (660)
..||.+|.+..+...........+++|+|++ +..+.|.+++|++++.|+. |||++ + +||++ +++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~--Gel~v~g~~~~~gY~~------~~~~~ 399 (536)
T d1mdba_ 328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEHN 399 (536)
T ss_dssp EEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHHH
T ss_pred eccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeeccccc--ceeecCCCcccccccc------ccccc
Confidence 8888888876555544444455678999986 6677777899999999996 99999 3 34444 45555
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~ 654 (660)
...|.. .+||+|||++++++||+|+|+||+||+||++|+||+|.|||++|.+||+|++|+|+...+.. +..++
T Consensus 400 ~~~~~~------~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~ 473 (536)
T d1mdba_ 400 AASFTE------DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSC 473 (536)
T ss_dssp HHHBCT------TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred cccccc------cCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEE
Confidence 555543 34999999999999999999999999999999999999999999999999999999877654 45678
Q ss_pred eecc
Q 006121 655 FYFS 658 (660)
Q Consensus 655 a~~~ 658 (660)
+|+.
T Consensus 474 a~v~ 477 (536)
T d1mdba_ 474 VFII 477 (536)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.9e-55 Score=482.21 Aligned_cols=432 Identities=16% Similarity=0.080 Sum_probs=336.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|+++.+.+ +++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++||
T Consensus 11 ~a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi 84 (503)
T d3cw9a1 11 AATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (503)
T ss_dssp HHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHhCCCCeEEEECCCC------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEe
Confidence 34899999999986542 4899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++++++++++++++++++|++... .....+........++. +.++........
T Consensus 85 ~~~~~~~~i~~~l~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~i~-----------------~~~~~~~~~~~~ 140 (503)
T d3cw9a1 85 NPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARIIF-----------------LGDLVRDGEPYS 140 (503)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEESSCH-------HHHHHHHHTTCCCEEEE-----------------HHHHEETTEECC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEeecch-------HHHHHHhhhcccccccc-----------------chhhhhhhcccc
Confidence 999999999999999999999988642 11112222222222221 222222211111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCC--CCCCEEEEecCccccchhh-HHHHhhh
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~-~~~~~l~ 420 (660)
...........++++++++|||||||.||+|+++|+++...+......+.. ...++++..+|+.|..+.. ..+.+..
T Consensus 141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (503)
T d3cw9a1 141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220 (503)
T ss_dssp CSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHH
T ss_pred cCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccc
Confidence 112233345678999999999999999999999999999888777665543 4568899999988877764 4566667
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcC--CCCCCCccCccEEEeecCCCChhhHHHHHhhCCCC
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~--~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (660)
.++++++.+ ..++..+...+..++++++..+|+.+..+.... ......+++||.+++||++++++...++...++ .
T Consensus 221 ~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~-~ 298 (503)
T d3cw9a1 221 LDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-G 298 (503)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCC-S
T ss_pred ccccccccc-ccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccc-c
Confidence 777777765 578899999999999999999999988776532 233456789999999999999999988887765 6
Q ss_pred ceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCccccccc
Q 006121 499 AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~ 578 (660)
.+.+.||.||++..+..... ......+.+.+.+.....+.+..++.++.|+. |++.+..+......++.+++.|++.
T Consensus 299 ~~~~~yg~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--g~~~~~~~~~~~~~~~~~~~~t~~~ 375 (503)
T d3cw9a1 299 EKVNIYGTTEAMNSLYMRQP-KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLNQPQATAEK 375 (503)
T ss_dssp EEEEEEEETTTEEEEEEESC-SSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred cccccccccccceeeeeccc-cccccccccccccceeeeeecccCcccCCCcc--ccccccccccccccccCChhhhHHH
Confidence 79999999999875443332 22333445566666666777788999999997 8887732222222233466677777
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
|.+ | ||+|||+|++++||+|+++||+||+||++|+||+|.|||++|.+||+|++|+|+...+.. +..+++|+
T Consensus 376 ~~~-----g--~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v 448 (503)
T d3cw9a1 376 LQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448 (503)
T ss_dssp EET-----T--EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred hcC-----C--ceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEE
Confidence 742 2 999999999999999999999999999999999999999999999999999999877665 45788887
Q ss_pred c
Q 006121 658 S 658 (660)
Q Consensus 658 ~ 658 (660)
+
T Consensus 449 ~ 449 (503)
T d3cw9a1 449 V 449 (503)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=98.20 E-value=7.7e-09 Score=99.68 Aligned_cols=128 Identities=7% Similarity=-0.083 Sum_probs=93.0
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC--Cc--ccCCCh
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PL--YWFPSL 90 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~--~~--~~~~~~ 90 (660)
+.+.++++.+|.++++++++...++ .||++||+. |++.++..+. .. ++|+++|++++..... .. .+.. .
T Consensus 107 ~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~-i~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (250)
T d1l5aa2 107 LLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--QS--YFMSPFINILPFESPHFADCQTELKV-L 180 (250)
T ss_dssp EECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--CC--BCCCSEEEEECCCCCCCTTCEEEEEE-E
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhhhhcCCCHHH-HHHHhcCCCC--CC--CccceEEEeeccCccCCCCCceEEEe-e
Confidence 3466677789999999999887777 899999999 9998865443 33 4499999987643221 11 1111 0
Q ss_pred hhhcccchHHHHHHh-CCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec
Q 006121 91 DQSKLTNLGNALEIH-GPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI 154 (660)
Q Consensus 91 ~~~~~~dl~~~~~~~-~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (660)
......|+.+.+... ++.+...+ |+. ++|++++|+++.++|.++|+++..+++.+..++
T Consensus 181 ~~~~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l 241 (250)
T d1l5aa2 181 ASGSAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDV 241 (250)
T ss_dssp EECCCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred eccceeeEEEEEEEcCCceEEEEEEEeh-----hhCCHHHHHHHHHHHHHHHHHHHhCcCcccchh
Confidence 122344666666544 44578888 999 999999999999999999999988887777664
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=89.92 E-value=1.7 Score=44.19 Aligned_cols=103 Identities=16% Similarity=-0.011 Sum_probs=78.3
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHH---HHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEec
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (660)
..|+.+|++...+|- .-.+|.+.+.. .++......+++++|++....+-+... +..+|+++..|+..+..+
T Consensus 23 ~~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~ 96 (534)
T d1v25a_ 23 LFGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTAN 96 (534)
T ss_dssp HSTTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred HcCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecC
Confidence 357888877665542 23478777744 444455567899999998888877663 355789999999999998
Q ss_pred CCCChhhHHHHHHHcCCeEEeecHHHHHHHHh
Q 006121 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (660)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~ 461 (660)
.....+++...|+..++..++........+..
T Consensus 97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 97 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 77788999999999999999988877766554
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=89.07 E-value=0.45 Score=48.74 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=80.8
Q ss_pred EEecCCCCCCcceEEecchhhHHHHH---HhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhH
Q 006121 361 ILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF 437 (660)
Q Consensus 361 i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l 437 (660)
+.++.+.++ +.+|++.+...+. ......++.++|++..+++-+.+. +..+++++..|+..+.++.....+++
T Consensus 37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l 111 (541)
T d1lcia_ 37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNEREL 111 (541)
T ss_dssp EEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHH
T ss_pred EEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHH
Confidence 334555544 4578887754443 444556899999998887766543 34567899999999999877788999
Q ss_pred HHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCC
Q 006121 438 GKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (660)
Q Consensus 438 ~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~ 482 (660)
...++..+++.+++....+..+.+.. ..++.++.+++.+..
T Consensus 112 ~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 152 (541)
T d1lcia_ 112 LNSMNISQPTVVFVSKKGLQKILNVQ----KKLPIIQKIIIMDSK 152 (541)
T ss_dssp HHHHHHHCCSEEEECGGGHHHHHHHH----HHCTTCCEEEETTCS
T ss_pred HHHHHhccceEEeeeccccccchhcc----ccccccceeeeecCC
Confidence 99999999999999998877665432 124566666655443
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=82.42 E-value=2.2 Score=44.58 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=71.7
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHH---HHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.+|.+|.|.. +-.+|.. -.+|.+.+.. .++......++.++|++..+++-+...- ..+++++..|+..+.++.
T Consensus 85 ~~d~~Ali~~-~~~~~~~--~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~i-v~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 85 NGDRTAIIWE-GDDTSQS--KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 160 (643)
T ss_dssp HTTSEEEEEE-CSSTTCE--EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEE-ecCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHH-HHHHHHHHhCeEEEecCC
Confidence 4678888654 3334433 3578887754 4444445678999999999998876643 447789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeec
Q 006121 431 SPLERSFGKFVQDAGVTVLGTV 452 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (660)
...++.+...+.+.++.++++.
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~ 182 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITA 182 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEc
Confidence 8888999999999999988864
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=82.13 E-value=2.3 Score=42.28 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=69.3
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHH---HHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++.-.+| ..+|.+.+.. .+.......+++++|++....+-+.+.- ..+|+++..|+..+.++.
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpi~~ 86 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHH-HHHHHHHHhCcEEEEeCC
Confidence 5677887654443 3478877643 4444455678999999988877665533 447799999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPS 454 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~ 454 (660)
...++++..++++.++..+.....
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 87 RLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCHHHHHHHHHhcCCcEEEeecc
Confidence 778889999999999998876543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=81.32 E-value=3.2 Score=41.52 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=76.5
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHH---HhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEec
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (660)
..||.+|++.- +-.+|.+.+...+. ......+++++|++....+-+.+. +..+|+++..|+..+.++
T Consensus 35 ~~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l~ 104 (514)
T d1amua_ 35 KRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPID 104 (514)
T ss_dssp HCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred hCCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEeC
Confidence 36788888741 13588887754443 344557899999999888877664 344678999999999998
Q ss_pred CCCChhhHHHHHHHcCCeEEeecHHHHHHHHh
Q 006121 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (660)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~ 461 (660)
....++.+...++..++..++..+.....+..
T Consensus 105 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 136 (514)
T d1amua_ 105 IEYPKERIQYILDDSQARMLLTQKHLVHLIHN 136 (514)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred CCCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence 77788899999999999999998887777654
|